BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035699
(633 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54MH3|DHX16_DICDI Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Dictyostelium discoideum GN=dhx16 PE=3 SV=1
Length = 1106
Score = 508 bits (1309), Expect = e-143, Method: Compositional matrix adjust.
Identities = 282/561 (50%), Positives = 361/561 (64%), Gaps = 81/561 (14%)
Query: 150 RDQRGKEELERRIRERDVAATRKLTGPKLTWKEEYDAIQRSRKDDGIENLREVSRQKYLP 209
R+QR +EL RI++RD +T+K KE + R +++ +E R SR+KYL
Sbjct: 232 REQREVKELSDRIKKRDEKSTKKKIVDDSETKESIERKNRLEQNEQLETERTKSRRKYLV 291
Query: 210 KRAQKKLEEIKDRTKDKENLFEGQKLTGAELCELDYEKKILDLVGQ-------------- 255
QK+L +K +++ LF+ QKLT E+ + + +KK+ +L Q
Sbjct: 292 GEEQKRLILLKREIEEEYELFKDQKLTEQEIKDFEKKKKLYELASQRINESQQSDDYYQL 351
Query: 256 -------EGLQRCSHESDKQQRKKADLK----YGSKNKKQQYD----------------- 287
+ L + S+ +D + +K D Y + K+ + +
Sbjct: 352 PSEIKDKDSLLKSSYINDNKNKKGNDSSSSSSYNPEQKEWEQNRMKSAISENRGLSTANI 411
Query: 288 -----DYQYVFEIEDKIVDFFRESVEL------------PDKSAVKSALEMLQEERKTLP 330
+Y+YVFE + ++F +E V P A +QE RK+LP
Sbjct: 412 GGGNEEYEYVFEDQ---IEFIKEEVLKQGQKGDGVMILKPGDDGSAQAKMTIQEVRKSLP 468
Query: 331 IYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSV 390
+YP+RE+L+ AV EY VL+IVGETGSGKTTQIPQYL+EAG++K GKIGCTQ RRVAAMSV
Sbjct: 469 VYPYREQLIDAVREYQVLIIVGETGSGKTTQIPQYLHEAGFSKTGKIGCTQPRRVAAMSV 528
Query: 391 AARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREIVLEPSLESYSVLI--- 447
AARV++E+G KLG+EVGYSIRFEDCTS KTVL+YMTDGML+RE + P L SYSVLI
Sbjct: 529 AARVAEEVGCKLGNEVGYSIRFEDCTSQKTVLQYMTDGMLVREFLTAPDLASYSVLIIDE 588
Query: 448 ----------------DLINYRPDLKLLISSATLDAENFSDYFGSAPIFKIPRRRYHVEL 491
D+ +RPDLKLLISSAT+DAE FSDYF AP F IP R+Y V
Sbjct: 589 AHERTLHTDILFGLLKDITRFRPDLKLLISSATMDAERFSDYFDGAPTFNIPGRKYEVTT 648
Query: 492 FYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAE 551
YT+APEADY++AA+VT LQIH+ EP+GDILVFLTGQ++ + A E+L+ RTRGLGTKI E
Sbjct: 649 HYTQAPEADYLDAAVVTVLQIHITEPLGDILVFLTGQEEVDQAAEMLQTRTRGLGTKIKE 708
Query: 552 LIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVKSYN 611
LII IY LPT+LQAKIFEPTP ARKVVLATNIAETSLTIDGI YVIDPGF K K +N
Sbjct: 709 LIITRIYSTLPTDLQAKIFEPTPPNARKVVLATNIAETSLTIDGIIYVIDPGFCKQKMFN 768
Query: 612 PKTGMESLLVNPISKASANQR 632
P+TGMESL++ P+S+ASANQR
Sbjct: 769 PRTGMESLVITPVSRASANQR 789
Score = 55.8 bits (133), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 43/70 (61%)
Query: 3 SEDNLKTWVSDKLISLLGYSQPAVVQYVIGLSKQALSSADLETKLQEFEFSSTTETRAFA 62
+ +++K WVSDK+ +LGY + +V Y+I LSK+A + L E +F + T++FA
Sbjct: 4 NNESIKNWVSDKIFDILGYRESTMVDYIIALSKKAKDVNSFISTLTEQDFPINSNTKSFA 63
Query: 63 QEIFARVPRK 72
QE+ + +K
Sbjct: 64 QELLNKSQQK 73
>sp|O45244|DHX16_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4
OS=Caenorhabditis elegans GN=mog-4 PE=1 SV=2
Length = 1008
Score = 504 bits (1299), Expect = e-142, Method: Compositional matrix adjust.
Identities = 305/710 (42%), Positives = 440/710 (61%), Gaps = 104/710 (14%)
Query: 6 NLKTWVSDKLISLLGYSQPAVVQYVIGLSKQALSSADLETKLQEF-EFSSTTETRAFAQE 64
+++ +++D+L S++G S ++ QYV L+K+A S+ DL KL++ +F + ++FA +
Sbjct: 2 SVEQFINDQLHSIVGISDRSICQYVHALAKKAKSAPDLVEKLRDAGDFPISPAIQSFADQ 61
Query: 65 IFARVPRKESESKTNTILDAAHYDADDDVIRIT-----------ASTNKKRFRKRIGSED 113
+ +R+PR+ + ++ A A+ ++ R+ +ST K RKR S
Sbjct: 62 LMSRMPRQATSARQRGPTTAEL--AEQELNRLNRAVGVLEDYSASSTKTKNVRKRKESSS 119
Query: 114 DDDEGIASVEEERRVVRRRIPREEEDDGSDSEEERLRDQRGKEELERRIRERDVAATRKL 173
+DDE + + V+ P + +D SD E + L+ I ERD A R
Sbjct: 120 EDDEAPIKASKPGKSVK---PSKSDDSESDIEAMEAK-------LDADIAERDALAAR-- 167
Query: 174 TGPKLTWKEE---YDAIQRSRKDD------GIENLREVSRQKYLPKRAQKKLEEIKDRTK 224
+ KE+ + +++ R D+ ++ LRE SR++YL KR KLEE++
Sbjct: 168 ----INKKEKDKTRNVMEKKRDDNKDKEGSSMDKLREESRRQYLKKRKVDKLEELEAIVH 223
Query: 225 DKENLFEGQKLTGAELCELDYEKKILDLVGQEG-------LQR--CSHESDKQ------- 268
D + LF +KLT E +++Y KK+L+ G ++R S KQ
Sbjct: 224 DDQTLFAREKLTKREKADMEYRKKVLEYTKAHGKAGDVMKMKRYHLPDASTKQIPSQYVE 283
Query: 269 ------------------QRKKADLKYGSKNKKQQYDDYQYVFEIEDKIVDFFRESVELP 310
Q + L G+K+ K++ +++ + D+ VDF +++++P
Sbjct: 284 DDEEDFRPGGDGAKWEEEQLMASMLHLGAKDAKRKEQEFELLL---DEKVDFI-QALQMP 339
Query: 311 --DKSAVKSALE----MLQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQ 364
++ V++ E ++E RK+LP+Y FR+ ++AV E+ VL+I GETGSGKTTQ+PQ
Sbjct: 340 GTNEEVVETEAEKKKMSIEETRKSLPVYAFRDAFIEAVKEHQVLIIEGETGSGKTTQLPQ 399
Query: 365 YLYEAGYTKQGK-IGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLK 423
YLYEAG+ + GK IGCTQ RRVAAMSVAARV+ E+G KLG +VGYSIRFEDCTS+KTVLK
Sbjct: 400 YLYEAGFCEGGKRIGCTQPRRVAAMSVAARVADEVGCKLGTQVGYSIRFEDCTSEKTVLK 459
Query: 424 YMTDGMLLREIVLEPSLESYSVLI-------------------DLINYRPDLKLLISSAT 464
YMTDGMLLRE + EP L SYSV++ D+ +R DLKLLISSAT
Sbjct: 460 YMTDGMLLREFLNEPDLASYSVMMIDEAHERTLHTDILFGLVKDIARFRKDLKLLISSAT 519
Query: 465 LDAENFSDYFGSAPIFKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPI-GDILV 523
LDAE FS +F APIF+IP RR+ V+++YT+APEADY++AAIVT +QIH+ +P+ GDILV
Sbjct: 520 LDAEKFSSFFDDAPIFRIPGRRFPVDIYYTQAPEADYVDAAIVTIMQIHLTQPLPGDILV 579
Query: 524 FLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLA 583
FLTGQ++ ET +E L +R++ LG+KI ELI P+Y NLP++LQAKIFEPTP+ ARKVVLA
Sbjct: 580 FLTGQEEIETVQEALMERSKALGSKIKELIPLPVYANLPSDLQAKIFEPTPKDARKVVLA 639
Query: 584 TNIAETSLTIDGIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQRT 633
TNIAETS+TIDGI YVIDPGF+K S++ ++G+E L V ISKA+ANQR
Sbjct: 640 TNIAETSVTIDGINYVIDPGFSKQNSFDARSGVEHLHVVTISKAAANQRA 689
>sp|Q7YR39|DHX16_PANTR Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Pan troglodytes GN=DHX16 PE=3 SV=1
Length = 1044
Score = 501 bits (1289), Expect = e-141, Method: Compositional matrix adjust.
Identities = 275/566 (48%), Positives = 370/566 (65%), Gaps = 69/566 (12%)
Query: 136 EEEDDGSDSEEERLRDQRGKEELERRIRERDVAATRKLT--GPKLTWKEEYDAIQRSRKD 193
E ED+ +E ERL+D ++ R+R+RD TR + K ++E ++ + +D
Sbjct: 162 ESEDEWERTERERLQDLEERDAFAERVRQRDKDRTRNVLERSDKKAYEEAQKRLKMAEED 221
Query: 194 DG--IENLREVSRQKYLPKRAQKKLEEIKDRTKDKENLFEGQKLTGAELCELDYEKKILD 251
+ LR+ SR++YL KR ++KLE+++ D+E LF +L+ E EL Y++++ D
Sbjct: 222 RKAMVPELRKKSRREYLAKREREKLEDLEAELADEEFLFGDVELSRHERQELKYKRRVRD 281
Query: 252 LVG-------QEGLQRC-----------------------SHESDKQQRK-------KAD 274
L QE L+ S ++QR+ A
Sbjct: 282 LAREYRAAGEQEKLEATNRYHMPKETRGQPARAVDLVEEESGAPGEEQRRWEEARLGAAS 341
Query: 275 LKYGSKNKKQQYDDYQYVFEIEDKIVDFFR-------ESVELPDKSAVKSALEMLQEERK 327
LK+G+++ Q YQ V E E++ ++F R E P S E +Q R+
Sbjct: 342 LKFGARDAASQEPKYQLVLE-EEETIEFVRATQLQGNEEPSAPPTSTQAQQKESIQAVRR 400
Query: 328 TLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQG-KIGCTQLRRVA 386
+LP++PFREELL A++ + VL+I GETGSGKTTQIPQYL+E GYT +G KI CTQ RRVA
Sbjct: 401 SLPVFPFREELLAAIANHQVLIIEGETGSGKTTQIPQYLFEEGYTNKGMKIACTQPRRVA 460
Query: 387 AMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREIVLEPSLESYSVL 446
AMSVAARV++EMGVKLG+EVGYSIRFEDCTS++TVL+YMTDGMLLRE + EP L SYSV+
Sbjct: 461 AMSVAARVAREMGVKLGNEVGYSIRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYSVV 520
Query: 447 I-------------------DLINYRPDLKLLISSATLDAENFSDYFGSAPIFKIPRRRY 487
+ D+ +RP+LK+L++SAT+D FS +F AP+F+IP RR+
Sbjct: 521 MVDEAHERTLHTDILFGLIKDVARFRPELKVLVASATMDTARFSTFFDDAPVFRIPGRRF 580
Query: 488 HVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGT 547
V++FYTKAPEADY+EA +V+ LQIHV +P GDILVFLTGQ++ E A E+L+ R R LG+
Sbjct: 581 PVDIFYTKAPEADYLEACVVSVLQIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLGS 640
Query: 548 KIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKV 607
KI EL++ PIY NLP+++QA+IF+PTP GARKVV+ATNIAETSLTI+GI YV+DPGF K
Sbjct: 641 KIRELLVLPIYANLPSDMQARIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCKQ 700
Query: 608 KSYNPKTGMESLLVNPISKASANQRT 633
KSYNP+TGMESL V P SKASANQR
Sbjct: 701 KSYNPRTGMESLTVTPCSKASANQRA 726
>sp|O60231|DHX16_HUMAN Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Homo sapiens GN=DHX16 PE=1 SV=2
Length = 1041
Score = 501 bits (1289), Expect = e-141, Method: Compositional matrix adjust.
Identities = 275/566 (48%), Positives = 370/566 (65%), Gaps = 69/566 (12%)
Query: 136 EEEDDGSDSEEERLRDQRGKEELERRIRERDVAATRKLT--GPKLTWKEEYDAIQRSRKD 193
E ED+ +E ERL+D ++ R+R+RD TR + K ++E ++ + +D
Sbjct: 159 ESEDEWERTERERLQDLEERDAFAERVRQRDKDRTRNVLERSDKKAYEEAQKRLKMAEED 218
Query: 194 DG--IENLREVSRQKYLPKRAQKKLEEIKDRTKDKENLFEGQKLTGAELCELDYEKKILD 251
+ LR+ SR++YL KR ++KLE+++ D+E LF +L+ E EL Y++++ D
Sbjct: 219 RKAMVPELRKKSRREYLAKREREKLEDLEAELADEEFLFGDVELSRHERQELKYKRRVRD 278
Query: 252 LVG-------QEGLQRC-----------------------SHESDKQQRK-------KAD 274
L QE L+ S ++QR+ A
Sbjct: 279 LAREYRAAGEQEKLEATNRYHMPKETRGQPARAVDLVEEESGAPGEEQRRWEEARLGAAS 338
Query: 275 LKYGSKNKKQQYDDYQYVFEIEDKIVDFFR-------ESVELPDKSAVKSALEMLQEERK 327
LK+G+++ Q YQ V E E++ ++F R E P S E +Q R+
Sbjct: 339 LKFGARDAASQEPKYQLVLE-EEETIEFVRATQLQGDEEPSAPPTSTQAQQKESIQAVRR 397
Query: 328 TLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQG-KIGCTQLRRVA 386
+LP++PFREELL A++ + VL+I GETGSGKTTQIPQYL+E GYT +G KI CTQ RRVA
Sbjct: 398 SLPVFPFREELLAAIANHQVLIIEGETGSGKTTQIPQYLFEEGYTNKGMKIACTQPRRVA 457
Query: 387 AMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREIVLEPSLESYSVL 446
AMSVAARV++EMGVKLG+EVGYSIRFEDCTS++TVL+YMTDGMLLRE + EP L SYSV+
Sbjct: 458 AMSVAARVAREMGVKLGNEVGYSIRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYSVV 517
Query: 447 I-------------------DLINYRPDLKLLISSATLDAENFSDYFGSAPIFKIPRRRY 487
+ D+ +RP+LK+L++SAT+D FS +F AP+F+IP RR+
Sbjct: 518 MVDEAHERTLHTDILFGLIKDVARFRPELKVLVASATMDTARFSTFFDDAPVFRIPGRRF 577
Query: 488 HVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGT 547
V++FYTKAPEADY+EA +V+ LQIHV +P GDILVFLTGQ++ E A E+L+ R R LG+
Sbjct: 578 PVDIFYTKAPEADYLEACVVSVLQIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLGS 637
Query: 548 KIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKV 607
KI EL++ PIY NLP+++QA+IF+PTP GARKVV+ATNIAETSLTI+GI YV+DPGF K
Sbjct: 638 KIRELLVLPIYANLPSDMQARIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCKQ 697
Query: 608 KSYNPKTGMESLLVNPISKASANQRT 633
KSYNP+TGMESL V P SKASANQR
Sbjct: 698 KSYNPRTGMESLTVTPCSKASANQRA 723
>sp|Q10752|CDC28_SCHPO Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein
cdc28 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=cdc28 PE=3 SV=2
Length = 1055
Score = 498 bits (1282), Expect = e-140, Method: Compositional matrix adjust.
Identities = 322/744 (43%), Positives = 438/744 (58%), Gaps = 121/744 (16%)
Query: 6 NLKTWVSDKLISLLGYSQPAVVQYVIGLSKQALSSADLETKLQEFEFSST-TETRAFAQE 64
+L+ +VSDK ISLLG S+P+VV+Y+I +K + SS +L KL F + FA
Sbjct: 2 SLEQYVSDKAISLLGMSEPSVVEYLIAEAKGSSSSNNLYQKLVSFGMDGDDPAVKEFAHT 61
Query: 65 IFARVPRKESESKTN---------TILDAAHYDADDDVI---------------RITAST 100
++AR+PR+ S K N IL ++ D++ + + T
Sbjct: 62 LYARIPREGSRPKENYNARKKKEQGILQMERLNSSYDLLIEPQSHETPGKPLKKKSRSKT 121
Query: 101 NKKRFRKRIGSEDD--DDE------GIASVEEERRVVRRRIPREEEDDGSDSEEERLRDQ 152
K+ +R ED+ DE G AS E V + + SD E ERL D
Sbjct: 122 PKREIARRQRDEDEWESDEYEEVVDGSASHPIEEDSVSTDFQNHDYEKSSDPETERLNDL 181
Query: 153 RGKEELERRIRERDVAA---------TRKLTGPKLTWKEEYDAIQRSRKDDGIENLREVS 203
R +EE E R+R +D+ A + K + +L ++ D + RK LR+ S
Sbjct: 182 REREEFEERLRRKDLEAATNEFVEDYSSKFSSEELALRKLADDPESWRK--LASELRKKS 239
Query: 204 RQKYLPKRAQKKLEEIKDRTKDKENLFEGQKLTGAELCELDYEKKIL------------- 250
RQ+YL RAQ++LE ++ +D+E LF G+KLT AE+ EL+ +K++L
Sbjct: 240 RQQYLKPRAQQQLEILRREIRDEEQLFAGEKLTQAEIRELEKKKELLRIAEERQRLEKQA 299
Query: 251 -------DLVGQEG-LQRCSHESDKQQRKKADLKYGSKNK-------KQQYD-------- 287
D ++G L R E QR K D G +N+ +Q+++
Sbjct: 300 TEYQMPEDYFTEQGKLDRKRKEEVLYQRYK-DSNEGEQNEVTMGAAEQQRWEAQQINKAL 358
Query: 288 -------------DYQYVFEIEDKIVDFFRE---SVELP---DKSAVKSALEMLQEERKT 328
+ +VF+ E + +DF + S E P DK + L+ RK+
Sbjct: 359 LFDQNEWLPPGEKQFDFVFD-ESQQIDFLLDTKLSAENPVDTDKMTDVKVEKSLESSRKS 417
Query: 329 LPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTK-QGKIGCTQLRRVAA 387
LP+Y ++++LL+A++EY VL+IV ETGSGKTTQ+PQ+L+EAGYTK KI CTQ RRVAA
Sbjct: 418 LPVYQYKDDLLKAINEYQVLLIVAETGSGKTTQLPQFLHEAGYTKGNKKICCTQPRRVAA 477
Query: 388 MSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREIVLEPSLESYSVLI 447
MSVAARV++EM V+LG EVGYSIRFE+ TS+KTV+KY+TDGMLLRE + EP L SYSV+I
Sbjct: 478 MSVAARVAKEMDVRLGQEVGYSIRFENATSEKTVIKYLTDGMLLREFLTEPDLASYSVII 537
Query: 448 -------------------DLINYRPDLKLLISSATLDAENFSDYFGSAPIFKIPRRRYH 488
D+ +RPDLK+LISSAT+DAE FS YF AP+F +P RRY
Sbjct: 538 IDEAHERTLHTDILFGLVKDIARFRPDLKVLISSATIDAEKFSAYFDEAPVFYVPGRRYP 597
Query: 489 VELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTK 548
V+++YT PEA+YI+AAI T LQIH +P GDILVFLTGQD+ E E +++ R LG +
Sbjct: 598 VDIYYTPQPEANYIQAAITTILQIHTTQPAGDILVFLTGQDEIELMSENMQELCRILGKR 657
Query: 549 IAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVK 608
I E+I+CPIY NLP+ELQAKIF+PTP GARKVVLATNIAETS+TIDG+ +VID GF K
Sbjct: 658 IPEIILCPIYANLPSELQAKIFDPTPPGARKVVLATNIAETSITIDGVNFVIDSGFVKQN 717
Query: 609 SYNPKTGMESLLVNPISKASANQR 632
YNP+TGMESL+ P S+ASA+QR
Sbjct: 718 MYNPRTGMESLVSVPCSRASADQR 741
>sp|Q767K6|DHX16_PIG Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Sus scrofa GN=DHX16 PE=3 SV=1
Length = 1045
Score = 497 bits (1279), Expect = e-139, Method: Compositional matrix adjust.
Identities = 274/566 (48%), Positives = 371/566 (65%), Gaps = 69/566 (12%)
Query: 136 EEEDDGSDSEEERLRDQRGKEELERRIRERDVAATRKLT--GPKLTWKEEYDAIQRSRKD 193
E ED+ +E ERL+D ++ R+R+RD TR + K ++E ++ + +D
Sbjct: 163 ESEDEWERTERERLQDLEERDAFAERVRQRDKDRTRNVLERSDKKAYEEAQKRLKMAEED 222
Query: 194 DG--IENLREVSRQKYLPKRAQKKLEEIKDRTKDKENLFEGQKLTGAELCELDYEKKILD 251
+ LR+ SR++YL KR ++KLE+++ D+E LF +L+ E EL Y++++ D
Sbjct: 223 RKAMVPELRKKSRREYLAKREREKLEDLEAELADEEFLFGDVELSRHERRELKYKRRVRD 282
Query: 252 LVG-------QEGLQRC-----------------------SHESDKQQRK-------KAD 274
L QE L+ S ++QR+ A
Sbjct: 283 LAREYRAAGEQEKLEATNRYHMPEETRGQPTRAVDLVEEESGAPGEEQRRWEEARLGAAS 342
Query: 275 LKYGSKNKKQQYDDYQYVFEIEDKIVDFFRESVELPDKSAVKSAL-------EMLQEERK 327
LK+G+++ Q YQ V E E++ ++F R + D+ E +Q R+
Sbjct: 343 LKFGARDAASQEPKYQLVLE-EEETIEFVRATQLQGDEEPAAPPAPTQAQQKESIQAVRR 401
Query: 328 TLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQG-KIGCTQLRRVA 386
+LP++PFREELL AV+ + +L+I GETGSGKTTQIPQYL+E GYT++G KI CTQ RRVA
Sbjct: 402 SLPVFPFREELLAAVANHQILIIEGETGSGKTTQIPQYLFEEGYTQKGMKIACTQPRRVA 461
Query: 387 AMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREIVLEPSLESYSVL 446
AMSVAARV++EMGVKLG+EVGYSIRFEDCTS++TVL+YMTDGMLLRE + EP L SYSV+
Sbjct: 462 AMSVAARVAREMGVKLGNEVGYSIRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYSVV 521
Query: 447 I-------------------DLINYRPDLKLLISSATLDAENFSDYFGSAPIFKIPRRRY 487
+ D+ +RP+LK+L++SATLD FS +F AP+F+IP RR+
Sbjct: 522 MVDEAHERTLHTDILFGLIKDVARFRPELKVLVASATLDTARFSTFFDDAPVFRIPGRRF 581
Query: 488 HVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGT 547
V++FYTKAPEADY+EA +V+ LQIHV +P GDILVFLTGQ++ E A E+L+ R R LG+
Sbjct: 582 PVDIFYTKAPEADYLEACVVSVLQIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLGS 641
Query: 548 KIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKV 607
KI EL++ PIY NLP+++QA+IF+PTP GARKVV+ATNIAETSLTI+GI YV+DPGF K
Sbjct: 642 KIRELLVLPIYANLPSDMQARIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCKQ 701
Query: 608 KSYNPKTGMESLLVNPISKASANQRT 633
KSYNP+TGMESL V P SKASANQR
Sbjct: 702 KSYNPRTGMESLTVTPCSKASANQRA 727
>sp|Q54F05|DHX8_DICDI ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum GN=dhx8
PE=3 SV=1
Length = 1160
Score = 413 bits (1062), Expect = e-114, Method: Compositional matrix adjust.
Identities = 194/337 (57%), Positives = 262/337 (77%), Gaps = 19/337 (5%)
Query: 316 KSALEMLQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQG 375
K+ ++E+R++LPI+P RE LQAVSE+ +LV++GETGSGKTTQ+ QYL EAGY +G
Sbjct: 495 KATSRSIKEQRESLPIFPLREAFLQAVSEHQLLVVIGETGSGKTTQMAQYLAEAGYGTRG 554
Query: 376 KIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREIV 435
KIGCTQ RRVAAMSV+ RV++E G +LG EVGY+IRFEDCTS +T++K+MTDG+LLRE +
Sbjct: 555 KIGCTQPRRVAAMSVSKRVAEEFGCQLGQEVGYAIRFEDCTSPETIIKFMTDGILLRECL 614
Query: 436 LEPSLESYSVLI-------------------DLINYRPDLKLLISSATLDAENFSDYFGS 476
L+P+L +YSV+I + RP+LK+LI+SATL+AE FS YF +
Sbjct: 615 LDPNLSAYSVIILDEAHERTISTDVLFGLLKQALQRRPELKVLITSATLEAEKFSKYFMN 674
Query: 477 APIFKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEE 536
A +F IP R + V++ YTK PEADY++A+++T +QIH++EP GDIL+FLTGQ++ + A +
Sbjct: 675 AQLFIIPGRTFPVDIRYTKDPEADYLDASLITVMQIHLSEPPGDILLFLTGQEEIDAACQ 734
Query: 537 ILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGI 596
IL +R + LG+ + +LII P+Y LP+E+Q KIFEP P G+RKVV+ATNIAETSLTIDGI
Sbjct: 735 ILYERMKSLGSNVPDLIILPVYSALPSEMQTKIFEPAPPGSRKVVIATNIAETSLTIDGI 794
Query: 597 KYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQRT 633
YVIDPGF+K K +NPK GM+SL+V PIS+A+A QR+
Sbjct: 795 YYVIDPGFSKQKCFNPKNGMDSLVVAPISQAAARQRS 831
>sp|Q14562|DHX8_HUMAN ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1
Length = 1220
Score = 407 bits (1047), Expect = e-112, Method: Compositional matrix adjust.
Identities = 195/336 (58%), Positives = 252/336 (75%), Gaps = 20/336 (5%)
Query: 316 KSALEMLQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQG 375
K+ + +L E+R++LPIY +E+L+QAV + +L+++GETGSGKTTQI QYL EAGYT +G
Sbjct: 553 KTQMSIL-EQRESLPIYKLKEQLVQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTSRG 611
Query: 376 KIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREIV 435
KIGCTQ RRVAAMSVA RVS+E G LG EVGY+IRFEDCTS +TV+KYMTDGMLLRE +
Sbjct: 612 KIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECL 671
Query: 436 LEPSLESYSVLI-------------------DLINYRPDLKLLISSATLDAENFSDYFGS 476
++P L Y++++ + R D+KL+++SATLDA FS YF
Sbjct: 672 IDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYFYE 731
Query: 477 APIFKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEE 536
APIF IP R Y VE+ YTK PE DY++A+++T +QIH+ EP GDILVFLTGQ++ +TA E
Sbjct: 732 APIFTIPGRTYPVEILYTKEPETDYLDASLITVMQIHLTEPPGDILVFLTGQEEIDTACE 791
Query: 537 ILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGI 596
IL +R + LG + ELII P+Y LP+E+Q +IF+P P G+RKVV+ATNIAETSLTIDGI
Sbjct: 792 ILYERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGI 851
Query: 597 KYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQR 632
YV+DPGF K K YN KTG++ L+V PIS+A A QR
Sbjct: 852 YYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQR 887
>sp|Q38953|DHX8_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2
Length = 1168
Score = 407 bits (1046), Expect = e-112, Method: Compositional matrix adjust.
Identities = 195/330 (59%), Positives = 251/330 (76%), Gaps = 19/330 (5%)
Query: 322 LQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQ 381
+QE+R++LPIY ++EL+QAV + VLV++GETGSGKTTQ+ QYL EAGYT +GKIGCTQ
Sbjct: 508 IQEQRESLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTKGKIGCTQ 567
Query: 382 LRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREIVLEPSLE 441
RRVAAMSVA RV++E G +LG EVGY+IRFEDCT TV+KYMTDGMLLREI+++ +L
Sbjct: 568 PRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLS 627
Query: 442 SYSVLI-------------------DLINYRPDLKLLISSATLDAENFSDYFGSAPIFKI 482
YSV++ L+ R DL+L+++SATLDAE FS YF + IF I
Sbjct: 628 QYSVIMLDEAHERTIHTDVLFGLLKKLMKRRLDLRLIVTSATLDAEKFSGYFFNCNIFTI 687
Query: 483 PRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRT 542
P R + VE+ YTK PE DY++AA++T LQIH+ EP GDILVFLTGQ++ ++A + L +R
Sbjct: 688 PGRTFPVEILYTKQPETDYLDAALITVLQIHLTEPEGDILVFLTGQEEIDSACQSLYERM 747
Query: 543 RGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDP 602
+GLG + ELII P+Y LP+E+Q++IF+P P G RKVV+ATNIAE SLTIDGI YV+DP
Sbjct: 748 KGLGKNVPELIILPVYSALPSEMQSRIFDPPPPGKRKVVVATNIAEASLTIDGIYYVVDP 807
Query: 603 GFAKVKSYNPKTGMESLLVNPISKASANQR 632
GFAK YNPK G+ESL++ PIS+ASA QR
Sbjct: 808 GFAKQNVYNPKQGLESLVITPISQASAKQR 837
>sp|A2A4P0|DHX8_MOUSE ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8 PE=2 SV=1
Length = 1244
Score = 407 bits (1045), Expect = e-112, Method: Compositional matrix adjust.
Identities = 195/336 (58%), Positives = 252/336 (75%), Gaps = 20/336 (5%)
Query: 316 KSALEMLQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQG 375
K+ + +L E+R++LPIY +E+L+QAV + +L+++GETGSGKTTQI QYL EAGYT +G
Sbjct: 577 KTQMSIL-EQRESLPIYKLKEQLVQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTSRG 635
Query: 376 KIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREIV 435
KIGCTQ RRVAAMSVA RVS+E G LG EVGY+IRFEDCTS +TV+KYMTDGMLLRE +
Sbjct: 636 KIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECL 695
Query: 436 LEPSLESYSVLI-------------------DLINYRPDLKLLISSATLDAENFSDYFGS 476
++P L Y++++ + R D+KL+++SATLDA FS YF
Sbjct: 696 IDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYFYE 755
Query: 477 APIFKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEE 536
APIF IP R Y VE+ YTK PE DY++A+++T +QIH+ EP GDILVFLTGQ++ +TA E
Sbjct: 756 APIFTIPGRTYPVEILYTKEPETDYLDASLITVMQIHLTEPPGDILVFLTGQEEIDTACE 815
Query: 537 ILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGI 596
IL +R + LG + ELII P+Y LP+E+Q +IF+P P G+RKVV+ATNIAETSLTIDGI
Sbjct: 816 ILYERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGI 875
Query: 597 KYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQR 632
YV+DPGF K K YN KTG++ L+V PIS+A A QR
Sbjct: 876 YYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQR 911
>sp|Q09530|MOG5_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5
OS=Caenorhabditis elegans GN=mog-5 PE=1 SV=1
Length = 1200
Score = 400 bits (1027), Expect = e-110, Method: Compositional matrix adjust.
Identities = 191/337 (56%), Positives = 255/337 (75%), Gaps = 20/337 (5%)
Query: 316 KSALEMLQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQG 375
++ L M+ E+R++LPI+ ++ L++A+ + +LV+VGETGSGKTTQ+ QY EAG ++G
Sbjct: 528 RTNLSMV-EQRESLPIFALKKNLMEAMIDNQILVVVGETGSGKTTQMTQYAIEAGLGRRG 586
Query: 376 KIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREIV 435
KIGCTQ RRVAAMSVA RV++E G KLG +VGY+IRFEDCTS T++KYMTDGMLLRE +
Sbjct: 587 KIGCTQPRRVAAMSVAKRVAEEYGCKLGTDVGYTIRFEDCTSQDTIIKYMTDGMLLRECL 646
Query: 436 LEPSLESYS---------------VLIDLINY----RPDLKLLISSATLDAENFSDYFGS 476
++P L YS VL L+ RP+LKL+I+SATLD+ FS+YF
Sbjct: 647 IDPDLSGYSLIMLDEAHERTIHTDVLFGLLKAAARKRPELKLIITSATLDSVKFSEYFLE 706
Query: 477 APIFKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEE 536
APIF IP R + VE+ YT+ PE+DY+EAA +T +QIH+ EP GD+LVFLTGQ++ +T+ E
Sbjct: 707 APIFTIPGRTFPVEILYTREPESDYLEAAHITVMQIHLTEPPGDVLVFLTGQEEIDTSCE 766
Query: 537 ILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGI 596
+L +R + +G + ELII P+YG LP+E+Q +IF+P P G RKVV+ATNIAETSLTIDGI
Sbjct: 767 VLYERMKSMGPDVPELIILPVYGALPSEMQTRIFDPAPAGKRKVVIATNIAETSLTIDGI 826
Query: 597 KYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQRT 633
YV+DPGF K K YNPK+GM+SL+V PIS+A+A QR+
Sbjct: 827 FYVVDPGFVKQKIYNPKSGMDSLVVTPISQAAAKQRS 863
>sp|O42643|PRP22_SCHPO Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prp22 PE=1 SV=1
Length = 1168
Score = 389 bits (998), Expect = e-107, Method: Compositional matrix adjust.
Identities = 199/394 (50%), Positives = 269/394 (68%), Gaps = 27/394 (6%)
Query: 267 KQQRKKADLKYGSKNKKQQYDDYQYVFEIEDKIV-------DFFRESVELPDKSAVKSAL 319
+Q+ +K DL ++ D ++ ++ D +R++ + S K
Sbjct: 441 EQEMEKQDLSLSWQDTMSNPQDRKFAQDVRDSAARQLTSETPSWRQATRNANISYGKRTT 500
Query: 320 EMLQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGK-IG 378
++E+R+ LP++ R++ L+AVS+ +LV++GETGSGKTTQI QYL E GYT K IG
Sbjct: 501 LSMKEQREGLPVFKLRKQFLEAVSKNQILVLLGETGSGKTTQITQYLAEEGYTSDSKMIG 560
Query: 379 CTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREIVLEP 438
CTQ RRVAAMSVA RV++E+G ++G EVGY+IRFED TS T +KYMTDGML RE +++P
Sbjct: 561 CTQPRRVAAMSVAKRVAEEVGCRVGEEVGYTIRFEDKTSRMTQIKYMTDGMLQRECLVDP 620
Query: 439 SLESYSVLI-------------------DLINYRPDLKLLISSATLDAENFSDYFGSAPI 479
L YSV+I + RPDLKL+++SATLDAE FS YF PI
Sbjct: 621 LLSKYSVIILDEAHERTVATDVLFGLLKGTVLKRPDLKLIVTSATLDAERFSSYFYKCPI 680
Query: 480 FKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILK 539
F IP R Y VE+ YTK PEADY++AA++T +QIH++E GDILVFLTGQ++ +T+ EIL
Sbjct: 681 FTIPGRSYPVEIMYTKQPEADYLDAALMTVMQIHLSEGPGDILVFLTGQEEIDTSCEILY 740
Query: 540 QRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYV 599
+R++ LG I EL+I P+Y LP+E+Q++IFEP P G RKVV+ATNIAETSLTIDGI YV
Sbjct: 741 ERSKMLGDSIPELVILPVYSALPSEIQSRIFEPAPPGGRKVVIATNIAETSLTIDGIYYV 800
Query: 600 IDPGFAKVKSYNPKTGMESLLVNPISKASANQRT 633
+DPGF K ++PK GM+SL+V PIS+A A QR+
Sbjct: 801 VDPGFVKQSCFDPKLGMDSLIVTPISQAQARQRS 834
>sp|P24384|PRP22_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PRP22 PE=1 SV=1
Length = 1145
Score = 380 bits (975), Expect = e-104, Method: Compositional matrix adjust.
Identities = 193/398 (48%), Positives = 272/398 (68%), Gaps = 33/398 (8%)
Query: 260 RCSHESDKQQRKKADLKYGSKNKKQQYDDYQYVFEIEDKIV------DFFRESVELPDKS 313
R E ++Q RK+ +KNKK ++ Q ++++++ + ES+ ++
Sbjct: 416 RKKREIEQQIRKQQSFDDPTKNKKDSRNEIQM---LKNQLIVTEWEKNRMNESISYGKRT 472
Query: 314 AVKSALEMLQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTK 373
++ + +R+TLP+Y R EL+QAV + LVIVGETGSGKTTQI QYL E G++
Sbjct: 473 SLP-----ISAQRQTLPVYAMRSELIQAVRDNQFLVIVGETGSGKTTQITQYLDEEGFSN 527
Query: 374 QGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLRE 433
G IGCTQ RRVAA+SVA RV++E+G K+GH+VGY+IRFED T T +KYMTDGML RE
Sbjct: 528 YGMIGCTQPRRVAAVSVAKRVAEEVGCKVGHDVGYTIRFEDVTGPDTRIKYMTDGMLQRE 587
Query: 434 IVLEPSLESYSVLI-----------DLINY--------RPDLKLLISSATLDAENFSDYF 474
+L+P + YSV++ D++ RP+LK++++SATL++ FS+YF
Sbjct: 588 ALLDPEMSKYSVIMLDEAHERTVATDVLFALLKKAAIKRPELKVIVTSATLNSAKFSEYF 647
Query: 475 GSAPIFKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETA 534
+ PI IP + + VE+ Y++ P+ DYIEAA+ + IH+NE GDILVFLTGQ++ ++
Sbjct: 648 LNCPIINIPGKTFPVEVLYSQTPQMDYIEAALDCVIDIHINEGPGDILVFLTGQEEIDSC 707
Query: 535 EEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTID 594
EIL R + LG I EL+I P+Y LP+E+Q+KIFEPTP+G+RKVV ATNIAETS+TID
Sbjct: 708 CEILYDRVKTLGDSIGELLILPVYSALPSEIQSKIFEPTPKGSRKVVFATNIAETSITID 767
Query: 595 GIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQR 632
GI YV+DPGFAK+ YN + G+E L+V+PIS+A ANQR
Sbjct: 768 GIYYVVDPGFAKINIYNARAGIEQLIVSPISQAQANQR 805
>sp|P20095|PRP2_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein
PRP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PRP2 PE=1 SV=1
Length = 876
Score = 375 bits (962), Expect = e-103, Method: Compositional matrix adjust.
Identities = 203/382 (53%), Positives = 257/382 (67%), Gaps = 37/382 (9%)
Query: 287 DDYQYVFEIEDKIVDFFRESVEL-PDK-----SAVKSALEM-------LQEERKTLPIYP 333
D Y YVF+ D ++D+ E +L P++ + + ALE +QE RK LP++
Sbjct: 169 DKYDYVFDT-DAMIDYTNEEDDLLPEEKLQYEARLAQALETEEKRILTIQEARKLLPVHQ 227
Query: 334 FREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGK--IGCTQLRRVAAMSVA 391
+++ELLQ + + VL+I+GETGSGKTTQ+PQYL E G+T QGK I TQ RRVAA SVA
Sbjct: 228 YKDELLQEIKKNQVLIIMGETGSGKTTQLPQYLVEDGFTDQGKLQIAITQPRRVAATSVA 287
Query: 392 ARVSQEMGVKLGHEVGYSIRFED-CTSDKTVLKYMTDGMLLREIVLEPSLESYSVLI--- 447
ARV+ EM V LG EVGY IRFED T +KTVLKYMTDGMLLRE + + L YS ++
Sbjct: 288 ARVADEMNVVLGKEVGYQIRFEDKTTPNKTVLKYMTDGMLLREFLTDSKLSKYSCIMIDE 347
Query: 448 ----------------DLINYRPDLKLLISSATLDAENFSDYFGSAPIFKIPRRRYHVEL 491
D++ RP LKLLISSAT++A+ FS++F + PIF +P RRY V++
Sbjct: 348 AHERTLATDILIGLLKDILPQRPTLKLLISSATMNAKKFSEFFDNCPIFNVPGRRYPVDI 407
Query: 492 FYTKAPEADYIEAAIVTALQIHVNEPI-GDILVFLTGQDQFETAEEILKQRTRGLGTKIA 550
YT PEA+YI AAI T QIH + + GDILVFLTGQ++ E + L++ LG++
Sbjct: 408 HYTLQPEANYIHAAITTIFQIHTTQSLPGDILVFLTGQEEIERTKTKLEEIMSKLGSRTK 467
Query: 551 ELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVKSY 610
++II PIY NLP E Q KIF+PTPE RKVVLATNIAETSLTIDGI+YVIDPGF K SY
Sbjct: 468 QMIITPIYANLPQEQQLKIFQPTPENCRKVVLATNIAETSLTIDGIRYVIDPGFVKENSY 527
Query: 611 NPKTGMESLLVNPISKASANQR 632
P TGM LL P S+AS +QR
Sbjct: 528 VPSTGMTQLLTVPCSRASVDQR 549
>sp|Q9P774|PRP16_SCHPO Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prp16 PE=3 SV=2
Length = 1173
Score = 359 bits (922), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 176/329 (53%), Positives = 233/329 (70%), Gaps = 20/329 (6%)
Query: 323 QEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQL 382
+E+R+ LP + RE+LL + + VL++VGETGSGKTTQ+ Q+LYE GY + G IGCTQ
Sbjct: 486 REQREFLPAFAVREQLLSVIRDNQVLIVVGETGSGKTTQLAQFLYEDGYHRNGMIGCTQP 545
Query: 383 RRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREIVLEPSLES 442
RRVAAMSVA RVS+EMGV+LG VGYSIRFED T TV+KYMTDG+LLRE +++ +LE
Sbjct: 546 RRVAAMSVAKRVSEEMGVRLGSTVGYSIRFEDVTGPDTVIKYMTDGVLLRESLMQNNLEK 605
Query: 443 YSVLI-------------------DLINYRPDLKLLISSATLDAENFSDYFGSAPIFKIP 483
YSV+I +++ R D+KLL++SAT++++ FSD+FG AP F IP
Sbjct: 606 YSVIIMDEAHERSLNTDILMGLLKKVLSRRRDIKLLVTSATMNSQKFSDFFGGAPQFTIP 665
Query: 484 RRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTR 543
R Y V++ + KAP +DY+EAA+ LQIH+++P GDILVF+TGQ+ E EI+ R
Sbjct: 666 GRTYPVDIMFAKAPCSDYVEAAVRQVLQIHLSQPAGDILVFMTGQEDIEATCEIIADRLN 725
Query: 544 GLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPG 603
L L I PIY +P +LQAKIF+ G RKVV+ATNIAETSLT+ GI YV+D G
Sbjct: 726 QL-HDAPRLSILPIYSQMPADLQAKIFDSAEPGVRKVVVATNIAETSLTVHGISYVVDTG 784
Query: 604 FAKVKSYNPKTGMESLLVNPISKASANQR 632
+ K+K YN K G+++L V PIS+A+ANQR
Sbjct: 785 YCKLKMYNSKLGIDTLQVTPISQANANQR 813
>sp|Q17R09|PRP16_BOVIN Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Bos
taurus GN=DHX38 PE=2 SV=1
Length = 1227
Score = 359 bits (921), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 185/419 (44%), Positives = 274/419 (65%), Gaps = 39/419 (9%)
Query: 250 LDLVGQEGLQRCSHESDKQQRKKADLKY----GSK-------NKKQQYD-----DYQYVF 293
L ++ ++G Q ++++RKKA K+ G+K K+++ D D + +
Sbjct: 440 LAIIARKGSQTVRKHREQKERKKAQHKHWELAGTKLGDIMGVKKEEEPDKSLTEDGKVDY 499
Query: 294 EIEDKIVDFFRESVELPDKSAVKSALEMLQEERKTLPIYPFREELLQAVSEYPVLVIVGE 353
E K D ++ E + A K ++ E+R+ LPI+ ++ELL + + ++++VGE
Sbjct: 500 RTEQKFADHMKKKSEASSEFAKKKSI---LEQRQYLPIFAVQQELLTIIRDNSIVIVVGE 556
Query: 354 TGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFE 413
TGSGKTTQ+ QYL+E GYT G IGCTQ RRVAAMSVA RVS+EMG LG EVGY+IRFE
Sbjct: 557 TGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVSEEMGGNLGEEVGYAIRFE 616
Query: 414 DCTSDKTVLKYMTDGMLLREIVLEPSLESYSVLI-------------------DLINYRP 454
DCTS+ T++KYMTDG+LLRE + E L+ YS +I +++ R
Sbjct: 617 DCTSESTLIKYMTDGILLRESLREADLDHYSAIIMDEAHERSLNTDVLFGLLREVVARRS 676
Query: 455 DLKLLISSATLDAENFSDYFGSAPIFKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHV 514
DLKL+++SAT+DAE F+ +FG+ PIF IP R + V++ ++K P+ DY+EAA+ +LQ+H+
Sbjct: 677 DLKLIVTSATMDAEKFASFFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQSLQVHL 736
Query: 515 NEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTP 574
+ GDIL+F+ GQ+ E + + + L A L + PIY LP++LQAKIF+ P
Sbjct: 737 SGAPGDILIFMPGQEDIEVTSDQIVEHLEELENAPA-LAVLPIYSQLPSDLQAKIFQKAP 795
Query: 575 EGARKVVLATNIAETSLTIDGIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQRT 633
+G RK ++ATNIAETSLT+DGI +VID G+ K+K +NP+ GM++L + PIS+A+ANQR+
Sbjct: 796 DGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDALQIYPISQANANQRS 854
>sp|Q92620|PRP16_HUMAN Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Homo
sapiens GN=DHX38 PE=1 SV=2
Length = 1227
Score = 357 bits (916), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 185/419 (44%), Positives = 273/419 (65%), Gaps = 39/419 (9%)
Query: 250 LDLVGQEGLQRCSHESDKQQRKKADLKY----GSK-------NKKQQYD-----DYQYVF 293
L ++ ++G Q ++++RKKA K+ G+K K+++ D D + +
Sbjct: 440 LAIIARKGSQTVRKHREQKERKKAQHKHWELAGTKLGDIMGVKKEEEPDKAVTEDGKVDY 499
Query: 294 EIEDKIVDFFRESVELPDKSAVKSALEMLQEERKTLPIYPFREELLQAVSEYPVLVIVGE 353
E K D + E + A K ++ E+R+ LPI+ ++ELL + + ++++VGE
Sbjct: 500 RTEQKFADHMKRKSEASSEFAKKKSI---LEQRQYLPIFAVQQELLTIIRDNSIVIVVGE 556
Query: 354 TGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFE 413
TGSGKTTQ+ QYL+E GYT G IGCTQ RRVAAMSVA RVS+EMG LG EVGY+IRFE
Sbjct: 557 TGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVSEEMGGNLGEEVGYAIRFE 616
Query: 414 DCTSDKTVLKYMTDGMLLREIVLEPSLESYSVLI-------------------DLINYRP 454
DCTS+ T++KYMTDG+LLRE + E L+ YS +I +++ R
Sbjct: 617 DCTSENTLIKYMTDGILLRESLREADLDHYSAIIMDEAHERSLNTDVLFGLLREVVARRS 676
Query: 455 DLKLLISSATLDAENFSDYFGSAPIFKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHV 514
DLKL+++SAT+DAE F+ +FG+ PIF IP R + V++ ++K P+ DY+EAA+ +LQ+H+
Sbjct: 677 DLKLIVTSATMDAEKFAAFFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQSLQVHL 736
Query: 515 NEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTP 574
+ GDIL+F+ GQ+ E + + + L A L + PIY LP++LQAKIF+ P
Sbjct: 737 SGAPGDILIFMPGQEDIEVTSDQIVEHLEELENAPA-LAVLPIYSQLPSDLQAKIFQKAP 795
Query: 575 EGARKVVLATNIAETSLTIDGIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQRT 633
+G RK ++ATNIAETSLT+DGI +VID G+ K+K +NP+ GM++L + PIS+A+ANQR+
Sbjct: 796 DGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDALQIYPISQANANQRS 854
>sp|P34498|MOG1_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1
OS=Caenorhabditis elegans GN=mog-1 PE=1 SV=2
Length = 1131
Score = 354 bits (908), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 169/332 (50%), Positives = 237/332 (71%), Gaps = 21/332 (6%)
Query: 322 LQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQ 381
++++R+ LP++ R++++ + E V++IVGETGSGKTTQ+ QYL E G+ G IGCTQ
Sbjct: 434 IKQQREYLPVFACRQKMMNVIRENNVVIIVGETGSGKTTQLAQYLLEDGFGDSGLIGCTQ 493
Query: 382 LRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREIVLEPSLE 441
RRVAAMSVA RV+ EMGV LG +VGY+IRFEDCTS+KT++KYMTDG+LLRE + + SL+
Sbjct: 494 PRRVAAMSVARRVADEMGVDLGQDVGYAIRFEDCTSEKTIIKYMTDGILLRECLGDGSLD 553
Query: 442 SYSVLI-------------------DLINYRPDLKLLISSATLDAENFSDYF-GSAPIFK 481
YS +I ++I R DLKL+++SAT+DA+ F+D+F G+ P F
Sbjct: 554 QYSAIIMDEAHERSLNTDVLFGLLREVIAKRADLKLIVTSATMDADKFADFFGGNCPTFT 613
Query: 482 IPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQR 541
IP R + VELF+ + P DY++AA+ A+ IH+ GDIL+F+ GQ+ E E++K++
Sbjct: 614 IPGRTFPVELFHARTPVEDYVDAAVKQAVTIHLGGMDGDILIFMPGQEDIECTCEMIKEK 673
Query: 542 TRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVID 601
G + L + PIY LP++LQAKIF+ P G RK ++ATNIAETSLT+DGI +VID
Sbjct: 674 L-GELDEAPPLAVLPIYSQLPSDLQAKIFQRAPGGMRKAIVATNIAETSLTVDGILFVID 732
Query: 602 PGFAKVKSYNPKTGMESLLVNPISKASANQRT 633
PGF K+K YNP+ GM++L + P+S+ASANQRT
Sbjct: 733 PGFCKMKVYNPRIGMDALSIFPVSQASANQRT 764
>sp|O22899|DHX15_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
OS=Arabidopsis thaliana GN=At2g47250 PE=2 SV=1
Length = 729
Score = 349 bits (895), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 177/342 (51%), Positives = 238/342 (69%), Gaps = 32/342 (9%)
Query: 324 EERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYT------KQGKI 377
E+R+ LP++ +++ L ++ L++VGETGSGKTTQIPQ++ +A ++ +
Sbjct: 60 EKRRDLPVWLQKDDFLNTLNSNQTLILVGETGSGKTTQIPQFVLDAVVADNSDKGRKWLV 119
Query: 378 GCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREIVLE 437
GCTQ RRVAAMSV+ RV+ EM V +G EVGYSIRFEDCTS +T+LKY+TDGMLLRE + +
Sbjct: 120 GCTQPRRVAAMSVSRRVADEMDVSIGEEVGYSIRFEDCTSSRTMLKYLTDGMLLREAMAD 179
Query: 438 PSLESYSVLI-------------------DLINYRPDLKLLISSATLDAENFSDYFGSAP 478
P LE Y V+I +++ RPDLKL++ SATL+AE F +YF AP
Sbjct: 180 PLLERYKVIILDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQEYFSGAP 239
Query: 479 IFKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEIL 538
+ K+P R + VE+FYT+ PE DY+EAAI T +QIH+ EP GDILVFLTG+++ E A +
Sbjct: 240 LMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKI 299
Query: 539 KQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTP----EG---ARKVVLATNIAETSL 591
+ LG ++ + + P+Y LP +Q KIF+P P EG RK+V++TNIAETSL
Sbjct: 300 NKEVSNLGDQVGPVKVVPLYSTLPPAMQQKIFDPAPVPLTEGGPAGRKIVVSTNIAETSL 359
Query: 592 TIDGIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQRT 633
TIDGI YVIDPGFAK K YNP+ +ESLLV+PISKASA+QR+
Sbjct: 360 TIDGIVYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRS 401
>sp|O42945|DHX15_SCHPO Probable pre-mRNA-splicing factor ATP-dependent RNA helicase prp43
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prp43 PE=3 SV=1
Length = 735
Score = 331 bits (849), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 184/356 (51%), Positives = 234/356 (65%), Gaps = 41/356 (11%)
Query: 311 DKSAVKSALEMLQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQY-LY-E 368
DK ++ ++L E R+ LP+Y REE L+ E ++V VGETGSGKTTQIPQ+ LY E
Sbjct: 58 DKPFSQNYFKIL-ETRRELPVYQQREEFLKIYHENQIIVFVGETGSGKTTQIPQFVLYDE 116
Query: 369 AGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDG 428
+ +I CTQ RRVAAMSVA RV+ EM V LG EVGY+IRFEDC+ T+LKYMTDG
Sbjct: 117 LPHLTNTQIACTQPRRVAAMSVAKRVADEMDVDLGEEVGYNIRFEDCSGPNTLLKYMTDG 176
Query: 429 MLLREIVLEPSLESYSVLI-------------------DLINYRPDLKLLISSATLDAEN 469
MLLRE + + L YS +I L RPDLK+++ SATLDA+
Sbjct: 177 MLLREAMTDHMLSRYSCIILDEAHERTLATDILMGLMKRLATRRPDLKIIVMSATLDAKK 236
Query: 470 FSDYFGSAPIFKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQD 529
F YF AP+ +P R Y VE++YT+ PE DY+EAA+ T LQIHV E GDILVFLTG++
Sbjct: 237 FQKYFFDAPLLAVPGRTYPVEIYYTQEPERDYLEAALRTVLQIHVEEGPGDILVFLTGEE 296
Query: 530 QFET--------AEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEG----- 576
+ E A++++++ G L + P+YG+LP Q +IFEPTPE
Sbjct: 297 EIEDACRKITLEADDLVREGAAG------PLKVYPLYGSLPPNQQQRIFEPTPEDTKSGY 350
Query: 577 ARKVVLATNIAETSLTIDGIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQR 632
RKVV++TNIAETSLTIDGI YV+DPGF+K K YNP+ +ESLLV+PISKASA QR
Sbjct: 351 GRKVVISTNIAETSLTIDGIVYVVDPGFSKQKIYNPRIRVESLLVSPISKASAQQR 406
>sp|P53131|PRP43_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PRP43 PE=1 SV=1
Length = 767
Score = 325 bits (833), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 176/340 (51%), Positives = 223/340 (65%), Gaps = 36/340 (10%)
Query: 326 RKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLY--EAGYTKQGKIGCTQLR 383
R+ LP++ R+E L+ ++V VGETGSGKTTQIPQ++ E + + ++ CTQ R
Sbjct: 90 RRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPR 149
Query: 384 RVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREIVLEPSLESY 443
RVAAMSVA RV++EM VKLG EVGYSIRFE+ TS+KT+LKYMTDGMLLRE + + L Y
Sbjct: 150 RVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRY 209
Query: 444 SVLI-------------------DLINYRPDLKLLISSATLDAENFSDYFGSAPIFKIPR 484
S +I ++ RPDLK++I SATLDAE F YF AP+ +P
Sbjct: 210 SCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPG 269
Query: 485 RRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQ---- 540
R Y VEL+YT + DY+++AI T LQIH E GDIL+FLTG+D+ E A +
Sbjct: 270 RTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQ 329
Query: 541 --RTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEG-----ARKVVLATNIAETSLTI 593
R G G L + P+YG+LP Q +IFEP PE RKVV++TNIAETSLTI
Sbjct: 330 LVREEGCGP----LSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTI 385
Query: 594 DGIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQRT 633
DGI YV+DPGF+K K YNP+ +ESLLV+PISKASA QR
Sbjct: 386 DGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRA 425
>sp|Q03319|PRH1_SCHPO Probable ATP-dependent RNA helicase prh1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=prh1 PE=3 SV=2
Length = 719
Score = 320 bits (821), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 159/329 (48%), Positives = 221/329 (67%), Gaps = 19/329 (5%)
Query: 324 EERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLR 383
E+RK LPI+ + L Q + + V+V+VGETGSGK+TQIPQ+L E Y ++G + TQ R
Sbjct: 91 EQRKNLPIWEAHDTLCQQIQDNRVIVVVGETGSGKSTQIPQFLNECPYAQEGCVAITQPR 150
Query: 384 RVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREIVLEPSLESY 443
RVAA+++A RV+ E G +LG +VGYSIRF+D TS KT +KY+TDGMLLRE++ +P L Y
Sbjct: 151 RVAAVNLAKRVAAEQGCRLGEQVGYSIRFDDTTSKKTRIKYLTDGMLLRELINDPILSQY 210
Query: 444 SVLI-------------------DLINYRPDLKLLISSATLDAENFSDYFGSAPIFKIPR 484
LI +I RP L+++I SATL+AE FS++F A I I
Sbjct: 211 HTLILDEAHERTLMTDMLLGFVKKIIKKRPALRVIIMSATLNAERFSEFFDGAEICYISG 270
Query: 485 RRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRG 544
R+Y V++ YT PE DY++A + T Q+H P GDILVFLTGQD+ E E ++K ++
Sbjct: 271 RQYPVQIHYTYTPEPDYLDACLRTIFQLHTKLPPGDILVFLTGQDEIEALEALIKSYSKQ 330
Query: 545 LGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGF 604
L + + ++ CP++ +LP E Q ++F P RKVVL+TNIAETS+TI GI+YVID G
Sbjct: 331 LPSNLPQIQACPLFASLPQEQQLQVFLPALANHRKVVLSTNIAETSVTISGIRYVIDTGL 390
Query: 605 AKVKSYNPKTGMESLLVNPISKASANQRT 633
AK+K +N K G+ESL V PIS+++A QR+
Sbjct: 391 AKIKQFNSKLGLESLTVQPISQSAAMQRS 419
>sp|Q54NJ4|DHX15_DICDI Putative pre-mRNA-splicing factor ATP-dependent RNA helicase dhx15
OS=Dictyostelium discoideum GN=dhx15 PE=3 SV=1
Length = 727
Score = 320 bits (819), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 167/344 (48%), Positives = 234/344 (68%), Gaps = 24/344 (6%)
Query: 309 LPDKSAVKSALEMLQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYE 368
+P K + E+RK LP++ +E+ ++ + E V+++VGETGSGKTTQIPQ++ +
Sbjct: 57 IPKKETFSKRYYEILEKRKELPVWKQKEDFIKVIKENQVVILVGETGSGKTTQIPQFVVD 116
Query: 369 AGYTKQGK-IGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTD 427
AG + GK +G TQ RRVAA+SVA RVS+EM +LG EVGYSIRFE+ +S +T +KY+TD
Sbjct: 117 AGLIRPGKMVGVTQPRRVAAISVAKRVSEEMDFELGEEVGYSIRFEELSSARTFMKYLTD 176
Query: 428 GMLLREIVLEPSLESYSVLI-------------------DLINYRPDLKLLISSATLDAE 468
GMLLRE + +P+L Y V+I D++ R DLKL++ SATL+A
Sbjct: 177 GMLLRESMSDPTLNKYDVIILDEAHERTLSTDILFGLIKDILKRRKDLKLIVMSATLEAG 236
Query: 469 NFSDYFGSAPIFKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQ 528
F YF +AP+ K+P R + VE+FYT+ DY+E+A+ T + IH NE GDILVFLTG+
Sbjct: 237 KFQKYFENAPLIKVPGRLHPVEIFYTEEAAKDYLESAVRTVIDIHTNEGTGDILVFLTGE 296
Query: 529 DQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAE 588
++ E +++ TR G + + P+Y +LP Q+KIF+ E RK +++TNIAE
Sbjct: 297 EEIEDTCAKIQRETRERG--LPPMKTLPLYSSLPIYQQSKIFDTCKE--RKCIVSTNIAE 352
Query: 589 TSLTIDGIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQR 632
TSLTIDGI +V+DPGF+K K+YNP++ +ESLLV PISKASANQR
Sbjct: 353 TSLTIDGIVFVVDPGFSKQKTYNPRSRVESLLVAPISKASANQR 396
>sp|O43143|DHX15_HUMAN Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
OS=Homo sapiens GN=DHX15 PE=1 SV=2
Length = 795
Score = 319 bits (818), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 172/338 (50%), Positives = 225/338 (66%), Gaps = 29/338 (8%)
Query: 324 EERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGK---IGCT 380
++R LP++ +++ + + V+VGETGSGKTTQIPQ+ E + G + CT
Sbjct: 132 KKRLQLPVWEYKDRFTDILVRHQSFVLVGETGSGKTTQIPQWCVEYMRSLPGPKRGVACT 191
Query: 381 QLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREIVLEPSL 440
Q RRVAAMSVA RV+ EM V LG EVGYSIRFEDC+S KT+LKYMTDGMLLRE + +P L
Sbjct: 192 QPRRVAAMSVAQRVADEMDVMLGQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLL 251
Query: 441 ESYSVLI-------------------DLINYRPDLKLLISSATLDAENFSDYFGSAPIFK 481
E Y V+I +++ R DLK+++ SATLDA F YF + P+
Sbjct: 252 ERYGVIILDEAHERTLATDILMGVLKEVVRQRSDLKVIVMSATLDAGKFQIYFDNCPLLT 311
Query: 482 IPRRRYHVELFYTKAPEADYIEAAIVTALQIHV-NEPIGDILVFLTGQDQFETAEEILKQ 540
IP R + VE+FYT PE DY+EAAI T +QIH+ E GD+L+FLTGQ++ + A + +K+
Sbjct: 312 IPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHMCEEEEGDLLLFLTGQEEIDEACKRIKR 371
Query: 541 RTRGLGTKIAELIICPIYGNLPTELQAKIFEPTP----EGA--RKVVLATNIAETSLTID 594
LG ++ ++ I P+Y LP + Q +IFEP P GA RKVV++TNIAETSLTID
Sbjct: 372 EVDDLGPEVGDIKIIPLYSTLPPQQQQRIFEPPPPKKQNGAIGRKVVVSTNIAETSLTID 431
Query: 595 GIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQR 632
G+ +VIDPGFAK K YNP+ +ESLLV ISKASA QR
Sbjct: 432 GVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQR 469
>sp|Q5RAZ4|DHX15_PONAB Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
OS=Pongo abelii GN=DHX15 PE=2 SV=2
Length = 795
Score = 319 bits (817), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 172/338 (50%), Positives = 225/338 (66%), Gaps = 29/338 (8%)
Query: 324 EERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGK---IGCT 380
++R LP++ +++ + + V+VGETGSGKTTQIPQ+ E + G + CT
Sbjct: 132 KKRLQLPVWEYKDRFTDILVRHQSFVLVGETGSGKTTQIPQWCVEYMRSLPGPKRGVACT 191
Query: 381 QLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREIVLEPSL 440
Q RRVAAMSVA RV+ EM V LG EVGYSIRFEDC+S KT+LKYMTDGMLLRE + +P L
Sbjct: 192 QPRRVAAMSVAQRVADEMDVMLGQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLL 251
Query: 441 ESYSVLI-------------------DLINYRPDLKLLISSATLDAENFSDYFGSAPIFK 481
E Y V+I +++ R DLK+++ SATLDA F YF + P+
Sbjct: 252 ERYGVIILDEAHERTLATDILMGVLKEVVRQRSDLKVIVMSATLDAGKFQIYFDNCPLLT 311
Query: 482 IPRRRYHVELFYTKAPEADYIEAAIVTALQIHV-NEPIGDILVFLTGQDQFETAEEILKQ 540
IP R + VE+FYT PE DY+EAAI T +QIH+ E GD+L+FLTGQ++ + A + +K+
Sbjct: 312 IPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHMCEEEEGDLLLFLTGQEEIDEACKRIKR 371
Query: 541 RTRGLGTKIAELIICPIYGNLPTELQAKIFEPTP----EGA--RKVVLATNIAETSLTID 594
LG ++ ++ I P+Y LP + Q +IFEP P GA RKVV++TNIAETSLTID
Sbjct: 372 EVDDLGPEVGDIKIIPLYSTLPPQQQQRIFEPPPPKKQNGAIGRKVVVSTNIAETSLTID 431
Query: 595 GIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQR 632
G+ +VIDPGFAK K YNP+ +ESLLV ISKASA QR
Sbjct: 432 GVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQR 469
>sp|O35286|DHX15_MOUSE Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
OS=Mus musculus GN=Dhx15 PE=2 SV=2
Length = 795
Score = 319 bits (817), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 172/338 (50%), Positives = 225/338 (66%), Gaps = 29/338 (8%)
Query: 324 EERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGK---IGCT 380
++R LP++ +++ + + V+VGETGSGKTTQIPQ+ E + G + CT
Sbjct: 132 KKRLQLPVWEYKDRFTDILVRHQSFVLVGETGSGKTTQIPQWCVEYMRSLPGPKRGVACT 191
Query: 381 QLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREIVLEPSL 440
Q RRVAAMSVA RV+ EM V LG EVGYSIRFEDC+S KT+LKYMTDGMLLRE + +P L
Sbjct: 192 QPRRVAAMSVAQRVADEMDVMLGQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLL 251
Query: 441 ESYSVLI-------------------DLINYRPDLKLLISSATLDAENFSDYFGSAPIFK 481
E Y V+I +++ R DLK+++ SATLDA F YF + P+
Sbjct: 252 ERYGVIILDEAHERTLATDILMGVLKEVVRQRSDLKVIVMSATLDAGKFQIYFDNCPLLT 311
Query: 482 IPRRRYHVELFYTKAPEADYIEAAIVTALQIHV-NEPIGDILVFLTGQDQFETAEEILKQ 540
IP R + VE+FYT PE DY+EAAI T +QIH+ E GD+L+FLTGQ++ + A + +K+
Sbjct: 312 IPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHMCEEEEGDLLLFLTGQEEIDEACKRIKR 371
Query: 541 RTRGLGTKIAELIICPIYGNLPTELQAKIFEPTP----EGA--RKVVLATNIAETSLTID 594
LG ++ ++ I P+Y LP + Q +IFEP P GA RKVV++TNIAETSLTID
Sbjct: 372 EVDDLGPEVGDIKIIPLYSTLPPQQQQRIFEPPPPKKQNGAIGRKVVVSTNIAETSLTID 431
Query: 595 GIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQR 632
G+ +VIDPGFAK K YNP+ +ESLLV ISKASA QR
Sbjct: 432 GVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQR 469
>sp|Q20875|DHX15_CAEEL Putative pre-mRNA-splicing factor ATP-dependent RNA helicase
F56D2.6 OS=Caenorhabditis elegans GN=F56D2.6 PE=2 SV=1
Length = 739
Score = 312 bits (799), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 168/347 (48%), Positives = 222/347 (63%), Gaps = 38/347 (10%)
Query: 322 LQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGK----- 376
+ E+R LP++ ++E+ ++ + + +VGETGSGKTTQIPQ+ E + KQ +
Sbjct: 69 IWEKRSQLPVWEYKEKFMELLRNNQCITLVGETGSGKTTQIPQWAVE--FMKQQQQGQPP 126
Query: 377 -----IGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLL 431
+ CTQ RRVAAMSVA RV++EM V LG EVGYSIRFEDC S++TVLKY TDGMLL
Sbjct: 127 GQARLVACTQPRRVAAMSVATRVAEEMDVVLGQEVGYSIRFEDCISERTVLKYCTDGMLL 186
Query: 432 REIVLEPSLESYSVLI-------------------DLINYRPDLKLLISSATLDAENFSD 472
RE + P L+ Y VLI +++ R D+K++I SATLDA F
Sbjct: 187 REAMNSPLLDKYKVLILDEAHERTLATDILMGLIKEIVRNRADIKVVIMSATLDAGKFQR 246
Query: 473 YFGSAPIFKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPI-GDILVFLTGQDQF 531
YF P+ +P R + VE+F+T E DY+EAAI T +QIH+ E + GDIL+FLTGQ++
Sbjct: 247 YFEDCPLLSVPGRTFPVEIFFTPNAEKDYLEAAIRTVIQIHMVEEVEGDILLFLTGQEEI 306
Query: 532 ETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEG------ARKVVLATN 585
E A + + + + LG L P+Y LP Q +IFEP P +RK V++TN
Sbjct: 307 EEACKRIDREIQALGADAGALSCIPLYSTLPPAAQQRIFEPAPPNRPNGAISRKCVISTN 366
Query: 586 IAETSLTIDGIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQR 632
IAETSLTIDG+ +VIDPGF+K K YNP+ +ESLLV PISKASA QR
Sbjct: 367 IAETSLTIDGVVFVIDPGFSKQKVYNPRIRVESLLVCPISKASAMQR 413
>sp|P15938|PRP16_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PRP16 PE=1 SV=2
Length = 1071
Score = 306 bits (785), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 171/345 (49%), Positives = 235/345 (68%), Gaps = 33/345 (9%)
Query: 322 LQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTK-QGK-IGC 379
++ ++ LP++ R +LL + E V+VI+GETGSGKTTQ+ QYLYE GY +GK I
Sbjct: 343 IKHTKEQLPVFRCRSQLLSLIRENQVVVIIGETGSGKTTQLAQYLYEEGYANDRGKSIVV 402
Query: 380 TQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCT-SDKTVLKYMTDGMLLREIVLEP 438
TQ RRVAA+SVA RV+ EM V LG EVGYSIRFED T S+ T LK++TDG+LLRE +L+
Sbjct: 403 TQPRRVAAISVAKRVAMEMQVPLGKEVGYSIRFEDVTDSECTKLKFVTDGILLRETLLDD 462
Query: 439 SLESYS-VLID------------------LINYRPDLKLLISSATLDAENFSDYFGSAPI 479
+L+ YS V+ID L+ R DLKL+I+SAT++A+ FS +FG+AP
Sbjct: 463 TLDKYSCVIIDEAHERSLNTDILLGFFKILLARRRDLKLIITSATMNAKKFSAFFGNAPQ 522
Query: 480 FKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPI--GDILVFLTGQDQFETA--- 534
F IP R + V+ YT P DY+EAA+ A++IH+ GDIL+F+TGQ+ ET
Sbjct: 523 FTIPGRTFPVQTIYTSNPVQDYVEAAVSQAVKIHLANDCSSGDILIFMTGQEDIETTFDT 582
Query: 535 --EEILKQRTRGLGT----KIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAE 588
E+ L+ ++ GT +I ++ I PIY LP +LQ KIF+ RK+++ATNIAE
Sbjct: 583 LQEKFLQVYSKKFGTANFEEINDIEILPIYSALPADLQFKIFQDLHGTKRKIIIATNIAE 642
Query: 589 TSLTIDGIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQRT 633
TSLTI GI+YVID G++K+K YNPK G++SL++ PISKA+A+QR+
Sbjct: 643 TSLTIKGIRYVIDCGYSKLKVYNPKIGLDSLVITPISKANADQRS 687
>sp|Q9H5Z1|DHX35_HUMAN Probable ATP-dependent RNA helicase DHX35 OS=Homo sapiens GN=DHX35
PE=1 SV=2
Length = 703
Score = 298 bits (763), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 156/345 (45%), Positives = 226/345 (65%), Gaps = 35/345 (10%)
Query: 322 LQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKI-GCT 380
++++R+ LP++ R +L + Y +VIVGETG GK+TQIPQYL EAG+T +G++ G T
Sbjct: 47 IEQQRQKLPVFKLRNHILYLIENYQTVVIVGETGCGKSTQIPQYLAEAGWTAEGRVVGVT 106
Query: 381 QLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSD-KTVLKYMTDGMLLREIVLEPS 439
Q RRVAA++VA RV++E G LGHEVGY IRF+DCT T +K++TDGML+RE++++P
Sbjct: 107 QPRRVAAVTVAGRVAEERGAVLGHEVGYCIRFDDCTDQLATRIKFLTDGMLVREMMVDPL 166
Query: 440 LESYSVL---------------IDLINY----RPDLKLLISSATLDAENFSDYFG----- 475
L YSV+ I L+ R DL+L+++SATLDA+ F D+F
Sbjct: 167 LTKYSVIMLDEAHERTLYTDIAIGLLKKIQKKRGDLRLIVASATLDADKFRDFFNQNETS 226
Query: 476 -----SAPIFKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQ 530
+ I + R + V++FY ++P DYI++ + T ++IH E GD+L FLTGQ++
Sbjct: 227 DPARDTCVILTVEGRTFPVDIFYLQSPVPDYIKSTVETVVKIHQTEGDGDVLAFLTGQEE 286
Query: 531 FETAEEILKQRTRGL---GTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIA 587
ET +L ++ R L G K L + P+Y LP+ Q K+FE RKV++ATN+A
Sbjct: 287 VETVVSMLIEQARALARTGMK-RHLRVLPMYAGLPSFEQMKVFERVSRSVRKVIVATNVA 345
Query: 588 ETSLTIDGIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQR 632
ETS+TI GI YVID GF K+++YNP+T +E L+V P+S+ASANQR
Sbjct: 346 ETSITISGIVYVIDCGFVKLRAYNPRTAIECLVVVPVSQASANQR 390
>sp|Q5RBD4|DHX35_PONAB Probable ATP-dependent RNA helicase DHX35 OS=Pongo abelii GN=DHX35
PE=2 SV=1
Length = 720
Score = 298 bits (763), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 157/345 (45%), Positives = 226/345 (65%), Gaps = 35/345 (10%)
Query: 322 LQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKI-GCT 380
++++R+ LP++ R +L + Y +VIVGETG GK+TQIPQYL EAG+T +G++ G T
Sbjct: 47 IEQQRQKLPVFKLRNHILYLIENYQTVVIVGETGCGKSTQIPQYLAEAGWTAEGRVVGVT 106
Query: 381 QLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSD-KTVLKYMTDGMLLREIVLEPS 439
Q RRVAA++VA RV++E G LGHEVGY IRF+DCT T +K++TDGML+RE++++P
Sbjct: 107 QPRRVAAVTVAGRVAEERGAVLGHEVGYCIRFDDCTDQLATRIKFLTDGMLVREMMVDPL 166
Query: 440 LESYSVL---------------IDLINY----RPDLKLLISSATLDAENFSDYFG----- 475
L YSV+ I L+ R DL+L+++SATLDA+ F D+F
Sbjct: 167 LTKYSVIMLDEAHERTLYTDIAIGLLKKIQKKRGDLRLIVASATLDADKFRDFFNQNETS 226
Query: 476 -----SAPIFKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQ 530
+ I + R + V++FY ++P DYI++ + T ++IH E GDIL FLTGQ++
Sbjct: 227 DPARDTCVILTVGGRTFPVDIFYLQSPVPDYIKSTVETVVKIHQTEGDGDILAFLTGQEE 286
Query: 531 FETAEEILKQRTRGL---GTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIA 587
ET +L ++ R L G K L + P+Y LP+ Q K+FE RKV++ATN+A
Sbjct: 287 VETVVSMLIEQARALARTGMK-RHLRVLPMYAGLPSFEQMKVFERVSRSVRKVIVATNVA 345
Query: 588 ETSLTIDGIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQR 632
ETS+TI GI YVID GF K+++YNP+T +E L+V P+S+ASANQR
Sbjct: 346 ETSITISGIVYVIDCGFVKLRAYNPRTAIECLVVVPVSQASANQR 390
>sp|Q80VY9|DHX33_MOUSE Putative ATP-dependent RNA helicase DHX33 OS=Mus musculus GN=Dhx33
PE=1 SV=1
Length = 698
Score = 291 bits (745), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 155/349 (44%), Positives = 218/349 (62%), Gaps = 28/349 (8%)
Query: 310 PDKSAVKSALEMLQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEA 369
P S + ALE+ +R++LPI+ R +LL + V++GETGSGKTTQIPQYLYE
Sbjct: 49 PSASPYREALEL---QRRSLPIFRARGQLLAQLRNLDNAVLIGETGSGKTTQIPQYLYEG 105
Query: 370 GYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGM 429
G ++QG I TQ RRVAA+S+A RVS E +LG VGY++RFED TS+ T +K++TDGM
Sbjct: 106 GISRQGIIAVTQPRRVAAISLATRVSDEKRTELGKLVGYTVRFEDVTSEDTRIKFLTDGM 165
Query: 430 LLREIVLEPSLESYS-VLIDLINYRP-----------------------DLKLLISSATL 465
LLRE + + L YS V++D + R LK+++ SAT+
Sbjct: 166 LLREAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKTAQKRRKELGKLPLKVIVMSATM 225
Query: 466 DAENFSDYFGSAPIFKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIG-DILVF 524
D + FS YF AP+ + R++ +++FYTK P+ DY+ AA+V+ QIH P DILVF
Sbjct: 226 DVDLFSQYFNRAPVLYLEGRQHPIQIFYTKQPQQDYLHAALVSVFQIHQEAPASQDILVF 285
Query: 525 LTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLAT 584
LTGQ++ E + + R L +++ P+Y +LP Q ++F+ P+G RKV+++T
Sbjct: 286 LTGQEEIEAMSKTCRDIARHLPDGCPSMLVLPLYASLPYSQQLRVFQGAPKGYRKVIIST 345
Query: 585 NIAETSLTIDGIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQRT 633
NIAETS+TI GIKYV+D G K K YNP +G+E L V +SK A QRT
Sbjct: 346 NIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQRT 394
>sp|Q9H6R0|DHX33_HUMAN Putative ATP-dependent RNA helicase DHX33 OS=Homo sapiens GN=DHX33
PE=1 SV=2
Length = 707
Score = 285 bits (728), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 152/349 (43%), Positives = 217/349 (62%), Gaps = 28/349 (8%)
Query: 310 PDKSAVKSALEMLQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEA 369
P S A+E+ +R++LPI+ R +LL + V++GETGSGKTTQIPQYLYE
Sbjct: 58 PSASPYPEAVEL---QRRSLPIFQARGQLLAQLRNLDNAVLIGETGSGKTTQIPQYLYEG 114
Query: 370 GYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGM 429
G ++QG I TQ RRVAA+S+A RVS E +LG VGY++RF+D TS+ T +K++TDGM
Sbjct: 115 GISRQGIIAVTQPRRVAAISLATRVSDEKRTELGKLVGYTVRFDDVTSEDTRIKFLTDGM 174
Query: 430 LLREIVLEPSLESYS-VLIDLINYRP-----------------------DLKLLISSATL 465
LLRE + + L YS V++D + R LK+++ SAT+
Sbjct: 175 LLREAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKAAQKRRKELGKLPLKVIVMSATM 234
Query: 466 DAENFSDYFGSAPIFKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIG-DILVF 524
D + FS YF AP+ + R++ +++FYTK P+ DY+ AA+V+ QIH P DILVF
Sbjct: 235 DVDLFSQYFNGAPVLYLEGRQHPIQVFYTKQPQNDYLHAALVSVFQIHQEAPSSQDILVF 294
Query: 525 LTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLAT 584
LTGQ++ E + + + L +++ P+Y +LP Q ++F+ P+G RKV+++T
Sbjct: 295 LTGQEEIEAMSKTCRDIAKHLPDGCPAMLVLPLYASLPYAQQLRVFQGAPKGYRKVIIST 354
Query: 585 NIAETSLTIDGIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQRT 633
NIAETS+TI GIKYV+D G K K YNP +G+E L V +SK A QRT
Sbjct: 355 NIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQRT 403
>sp|Q5XI69|DHX40_RAT Probable ATP-dependent RNA helicase DHX40 OS=Rattus norvegicus
GN=Dhx40 PE=2 SV=1
Length = 779
Score = 284 bits (727), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 153/343 (44%), Positives = 216/343 (62%), Gaps = 37/343 (10%)
Query: 328 TLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAA 387
T PI R++L+QAV + L++ G TGSGKTTQ+P+YLYEAG+++ G IG TQ R+VAA
Sbjct: 52 TFPIQKQRKKLIQAVRDNSFLIVTGNTGSGKTTQLPKYLYEAGFSQHGMIGVTQPRKVAA 111
Query: 388 MSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREIVLEPSLESYSVLI 447
+SVA RV++EM LG +VGY +RF+DC+S +T +KYMTDG LL+ I+ +P+L +SV+I
Sbjct: 112 ISVAQRVAEEMKCTLGSKVGYQVRFDDCSSKETAIKYMTDGCLLKHILGDPNLNKFSVII 171
Query: 448 -----------DLI-------------NYRPDLKLLISSATLDAENFSDYFGSAPIFKIP 483
D++ N + LK+++ SAT++ S +FG+ PIF IP
Sbjct: 172 LDEAHERTLTTDILFGLLKKLFQDKSPNRKEHLKVVVMSATMELAKLSAFFGNCPIFDIP 231
Query: 484 RRRYHV-ELFYTKAPEAD-----YIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEI 537
R Y V E F D YI+A + + IH+NE GDILVFLTGQ + E + E+
Sbjct: 232 GRLYPVREKFCNLIGPRDRENTAYIQAIVKVTMDIHLNEMAGDILVFLTGQFEIEKSCEL 291
Query: 538 LKQRTRGL-------GTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETS 590
L Q + T + L+I P YG++ T+ Q +IF P P G RK V++TNI+ TS
Sbjct: 292 LFQMAESVDYDYDVQDTTLDGLLILPCYGSMTTDQQRRIFLPPPPGIRKCVISTNISATS 351
Query: 591 LTIDGIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQRT 633
LTIDGI+YV+D GF K ++NP+ G++ L V PISK+ A QR+
Sbjct: 352 LTIDGIRYVVDGGFVKQLNHNPRLGLDILEVVPISKSEALQRS 394
>sp|Q6PE54|DHX40_MOUSE Probable ATP-dependent RNA helicase DHX40 OS=Mus musculus GN=Dhx40
PE=2 SV=1
Length = 779
Score = 284 bits (727), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 153/343 (44%), Positives = 216/343 (62%), Gaps = 37/343 (10%)
Query: 328 TLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAA 387
T PI R++L+QAV + L++ G TGSGKTTQ+P+YLYEAG+++ G IG TQ R+VAA
Sbjct: 52 TFPIQKQRKKLIQAVRDNSFLIVTGNTGSGKTTQLPKYLYEAGFSQHGMIGVTQPRKVAA 111
Query: 388 MSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREIVLEPSLESYSVLI 447
+SVA RV++EM LG +VGY +RF+DC+S +T +KYMTDG LL+ I+ +P+L +SV+I
Sbjct: 112 ISVAQRVAEEMKCTLGSKVGYQVRFDDCSSKETAIKYMTDGCLLKHILGDPNLSKFSVII 171
Query: 448 -----------DLI-------------NYRPDLKLLISSATLDAENFSDYFGSAPIFKIP 483
D++ N + LK+++ SAT++ S +FG+ PIF IP
Sbjct: 172 LDEAHERTLTTDILFGLLKKLFQDKSPNRKEHLKVVVMSATMELAKLSAFFGNCPIFDIP 231
Query: 484 RRRYHV-ELFYTKAPEAD-----YIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEI 537
R Y V E F D YI+A + + IH+NE GDILVFLTGQ + E + E+
Sbjct: 232 GRLYPVREKFCNLIGPRDRENTAYIQAIVKVTMDIHLNEMAGDILVFLTGQFEIEKSCEL 291
Query: 538 LKQRTRGL-------GTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETS 590
L Q + T + L+I P YG++ T+ Q +IF P P G RK V++TNI+ TS
Sbjct: 292 LFQMAESVDYDYDVQDTTLDGLLILPCYGSMTTDQQRRIFLPPPPGIRKCVISTNISATS 351
Query: 591 LTIDGIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQRT 633
LTIDGI+YV+D GF K ++NP+ G++ L V PISK+ A QR+
Sbjct: 352 LTIDGIRYVVDGGFVKQLNHNPRLGLDILEVVPISKSEALQRS 394
>sp|Q8IX18|DHX40_HUMAN Probable ATP-dependent RNA helicase DHX40 OS=Homo sapiens GN=DHX40
PE=1 SV=2
Length = 779
Score = 283 bits (725), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 152/343 (44%), Positives = 216/343 (62%), Gaps = 37/343 (10%)
Query: 328 TLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAA 387
T PI R++++QAV + L++ G TGSGKTTQ+P+YLYEAG+++ G IG TQ R+VAA
Sbjct: 52 TFPIQKQRKKIIQAVRDNSFLIVTGNTGSGKTTQLPKYLYEAGFSQHGMIGVTQPRKVAA 111
Query: 388 MSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREIVLEPSLESYSVLI 447
+SVA RV++EM LG +VGY +RF+DC+S +T +KYMTDG LL+ I+ +P+L +SV+I
Sbjct: 112 ISVAQRVAEEMKCTLGSKVGYQVRFDDCSSKETAIKYMTDGCLLKHILGDPNLTKFSVII 171
Query: 448 -----------DLI-------------NYRPDLKLLISSATLDAENFSDYFGSAPIFKIP 483
D++ N + LK+++ SAT++ S +FG+ PIF IP
Sbjct: 172 LDEAHERTLTTDILFGLLKKLFQEKSPNRKEHLKVVVMSATMELAKLSAFFGNCPIFDIP 231
Query: 484 RRRYHV-ELFYTKAPEAD-----YIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEI 537
R Y V E F D YI+A + + IH+NE GDILVFLTGQ + E + E+
Sbjct: 232 GRLYPVREKFCNLIGPRDRENTAYIQAIVKVTMDIHLNEMAGDILVFLTGQFEIEKSCEL 291
Query: 538 LKQRTRGL-------GTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETS 590
L Q + T + L+I P YG++ T+ Q +IF P P G RK V++TNI+ TS
Sbjct: 292 LFQMAESVDYDYDVQDTTLDGLLILPCYGSMTTDQQRRIFLPPPPGIRKCVISTNISATS 351
Query: 591 LTIDGIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQRT 633
LTIDGI+YV+D GF K ++NP+ G++ L V PISK+ A QR+
Sbjct: 352 LTIDGIRYVVDGGFVKQLNHNPRLGLDILEVVPISKSEALQRS 394
>sp|Q5R864|DHX40_PONAB Probable ATP-dependent RNA helicase DHX40 OS=Pongo abelii GN=DHX40
PE=2 SV=1
Length = 779
Score = 283 bits (724), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 152/343 (44%), Positives = 216/343 (62%), Gaps = 37/343 (10%)
Query: 328 TLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAA 387
T PI R++++QAV + L++ G TGSGKTTQ+P+YLYEAG+++ G IG TQ R+VAA
Sbjct: 52 TFPIQKQRKKIIQAVRDNSFLIVTGNTGSGKTTQLPKYLYEAGFSQHGMIGVTQPRKVAA 111
Query: 388 MSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREIVLEPSLESYSVLI 447
+SVA RV++EM LG +VGY +RF+DC+S +T +KYMTDG LL+ I+ +P+L +SV+I
Sbjct: 112 ISVAQRVAEEMKCTLGSKVGYQVRFDDCSSKETAIKYMTDGCLLKHILGDPNLTKFSVII 171
Query: 448 -----------DLI-------------NYRPDLKLLISSATLDAENFSDYFGSAPIFKIP 483
D++ N + LK+++ SAT++ S +FG+ PIF IP
Sbjct: 172 LDEAHERTLTTDILFGLLKKLFQEKSPNRKEHLKVVVMSATMELAKLSAFFGNCPIFDIP 231
Query: 484 RRRYHV-ELFYTKAPEAD-----YIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEI 537
R Y V E F D YI+A + + IH+NE GDILVFLTGQ + E + E+
Sbjct: 232 GRLYPVREKFCNLIGPRDRENTAYIQAIVKVTMDIHLNEMAGDILVFLTGQFEIEKSCEL 291
Query: 538 LKQRTRGL-------GTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETS 590
L Q + T + L+I P YG++ T+ Q +IF P P G RK V++TNI+ TS
Sbjct: 292 LFQMAESVDYDYDVQDTTLDGLLILPCYGSMTTDQQRRIFLPPPPGIRKCVISTNISATS 351
Query: 591 LTIDGIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQRT 633
LTIDGI+YV+D GF K ++NP+ G++ L V PISK+ A QR+
Sbjct: 352 LTIDGIRYVVDGGFVKQLNHNPRLGLDILEVVPISKSEALQRS 394
>sp|P36009|DHR2_YEAST Probable ATP-dependent RNA helicase DHR2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DHR2 PE=1
SV=1
Length = 735
Score = 281 bits (720), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 148/344 (43%), Positives = 220/344 (63%), Gaps = 24/344 (6%)
Query: 314 AVKSALEMLQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGY-- 371
++KS L + R+TLP+Y + E++ + PV V++GETGSGK+TQIPQ++ E Y
Sbjct: 66 SLKSRASDLLKMRETLPVYQHKREIMSYIESNPVTVLIGETGSGKSTQIPQFVLEKLYDT 125
Query: 372 TKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLL 431
K G I TQ RRVAA+++A RV+QE G KLG +VGYS+RF++ T+ +T LKY+TDGMLL
Sbjct: 126 KKHGSIAVTQPRRVAAINLATRVAQEHGCKLGEQVGYSVRFDNTTTTRTRLKYLTDGMLL 185
Query: 432 REIVLEPSLESYSVLI-----------DLI---------NYRPDLKLLISSATLDAENFS 471
RE+++ L YSV++ DLI RPDL++++ SATL AE FS
Sbjct: 186 RELMMNSDLREYSVIVIDEAHERTVLTDLILGFLKSLIQGPRPDLRIIVMSATLQAEKFS 245
Query: 472 DYFGSAPIFKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQF 531
++F +API + R++ V+ +Y KAP D ++A I +QI+ E +GDIL FL GQ++
Sbjct: 246 EFFNNAPILFVEGRKFDVKQYYLKAPTDDIVDAVIRCCIQINQGEELGDILCFLPGQEEI 305
Query: 532 ETAEEILKQRTRGLG--TKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAET 589
+ A I+++ + + + ++ P+Y LP Q+ +F P RKVV +TNIAET
Sbjct: 306 DKAVTIMEKIAKYVSDEAPVPLIVPYPLYAALPAVQQSLVFAPIKGFKRKVVFSTNIAET 365
Query: 590 SLTIDGIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQRT 633
S+TI G+K+V+D G KVK + + G+ +LL PIS+ASA QR+
Sbjct: 366 SVTISGVKFVVDSGLRKVKVWRHQLGLATLLTVPISQASAMQRS 409
>sp|Q9BKQ8|DHX35_CAEEL Probable ATP-dependent RNA helicase DHX35 homolog OS=Caenorhabditis
elegans GN=Y67D2.6 PE=3 SV=1
Length = 732
Score = 267 bits (682), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 146/341 (42%), Positives = 208/341 (60%), Gaps = 31/341 (9%)
Query: 322 LQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGK-IGCT 380
+Q++R LPI+ R +L Y ++IVGETG GK+TQ+PQ+L EAG+ G+ I T
Sbjct: 70 IQQQRIRLPIFKNRGHILYMCERYRTIIIVGETGCGKSTQVPQFLLEAGWAADGRQIVIT 129
Query: 381 QLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREIVLEPSL 440
Q RRVA +++A RV++E LGH+VGY++RF+D + T +K+MTDG+LLREI+ +P L
Sbjct: 130 QPRRVAVVTLATRVAEEKDCILGHDVGYTVRFDDVSDKDTKVKFMTDGLLLREILADPLL 189
Query: 441 ESYSVLI-------------------DLINYRPDLKLLISSATLDAENFSDYF------- 474
YS+++ +I R DL++++SSATLDAE F D+F
Sbjct: 190 SKYSIIMIDEAHERSCNTDILLGLLRKIIQIRNDLRIIVSSATLDAELFKDFFEMNETGN 249
Query: 475 ---GSAPIFKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQF 531
+A I + R + V + +TK DY ++A+ T + IH +E GDILVFLTGQD+
Sbjct: 250 SDKDTAGIISVEGRTHPVAVHHTKTSVPDYCQSAVDTVINIHKHENPGDILVFLTGQDEV 309
Query: 532 ETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSL 591
E E L++ L L + P YG LP Q K F+ TP G RKVV+ATNIAE S+
Sbjct: 310 EDVCEKLRELAGNL-KNCDRLWVVPCYGALPAREQMKAFDSTPHGTRKVVVATNIAEASI 368
Query: 592 TIDGIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQR 632
TI GI YVID G+ K+++ + G+E+L+ +SKASA QR
Sbjct: 369 TIPGICYVIDTGYVKLRAQHAANGVETLMRVTVSKASAEQR 409
>sp|Q9HE06|YK99_SCHPO Putative pre-mRNA-splicing factor ATP-dependent RNA helicase
C20H4.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=SPAC20H4.09 PE=3 SV=1
Length = 647
Score = 244 bits (623), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 136/334 (40%), Positives = 197/334 (58%), Gaps = 22/334 (6%)
Query: 322 LQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQ-GKIGCT 380
L ++K LPI +R +LL AV + + +++G TG GKTTQIPQ+LYEAG+ Q G IGCT
Sbjct: 18 LNIQKKLLPITKYRNQLLYAVEQNQITIVLGHTGCGKTTQIPQFLYEAGWASQNGIIGCT 77
Query: 381 QLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREIVLEPSL 440
Q RR+ A SV+ RVS E+ G GYSI+F+ S+KT +KYMTDG+LL EI +P L
Sbjct: 78 QPRRLVAKSVSERVSLELNSPPGSLCGYSIQFDHNVSEKTKIKYMTDGILLNEIFFDPLL 137
Query: 441 ESYSVLI-------------------DLINYRPDLKLLISSATLDAENFSDYFGSAPI-- 479
E YS++I ++ R D +L++SSA++DA S +FG +
Sbjct: 138 ERYSIVILDEVHERTLSTDLLLGVLKRILEKRNDFRLVLSSASVDANKLSQFFGQDKVCT 197
Query: 480 FKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILK 539
I + + VE + + P +Y+++AI T + I+ P GDILVFL+G+ + E + ++
Sbjct: 198 MSIEGKLFPVETLFLQKPTENYVDSAIETVININSTYPPGDILVFLSGRKEIEYCIKKIE 257
Query: 540 QRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYV 599
L+ P++ L + Q ++F RKV+ +TNIAETS+TIDGI YV
Sbjct: 258 DSLIHASEDCQTLVPLPLHAGLTVDEQMRVFNIYDGDFRKVIFSTNIAETSITIDGIVYV 317
Query: 600 IDPGFAKVKSYNPKTGMESLLVNPISKASANQRT 633
+D GF K + YNP T L+ PISK+SA QR+
Sbjct: 318 VDSGFNKQRIYNPYTRTSKLINVPISKSSAIQRS 351
>sp|P45018|HRPA_HAEIN ATP-dependent RNA helicase HrpA homolog OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=hrpA PE=3
SV=2
Length = 1304
Score = 236 bits (601), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 145/344 (42%), Positives = 205/344 (59%), Gaps = 36/344 (10%)
Query: 312 KSAVKSALEMLQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGY 371
KSAV++ + ++LP+ + E+ + +SE+ V+V+ GETGSGKTTQ+P+ E G+
Sbjct: 70 KSAVQNPIVF----PESLPVSQRKVEIQKLISEHQVIVVAGETGSGKTTQLPKMCLELGF 125
Query: 372 TKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLL 431
G IG TQ RR+AA SVAAR+++E+ +LG VGY +RF D SD T +K MTDG+LL
Sbjct: 126 GNLGMIGHTQPRRIAARSVAARIAEELETELGGLVGYKVRFNDQISDNTQIKLMTDGILL 185
Query: 432 REIVLEPSLESYSVLI-----------DLI---------NYRPDLKLLISSATLDAENFS 471
EI + L YS LI D I R DLKL+I+SAT+D E FS
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRRDLKLIITSATIDVERFS 245
Query: 472 DYFGSAPIFKIPRRRYHVELFYTKAPEADYIE--AAIVTALQIHVNEPIGDILVFLTGQD 529
+F +API ++ R Y VE+ Y E D + I+ A+ E GDIL+F+ G+
Sbjct: 246 KHFNNAPIIEVSGRTYPVEVRYRPVVEEDDQDQLQGILNAVDELQAEGRGDILIFMNGER 305
Query: 530 QF-ETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAE 588
+ +TAE + KQ + I P++ L + Q KIF P+ G ++VLATN+AE
Sbjct: 306 EIRDTAEALQKQNLKHTE-------ILPLFARLSAQEQNKIFHPS--GLNRIVLATNVAE 356
Query: 589 TSLTIDGIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQR 632
TSLT+ IKYVIDPG A++ Y+ +T ++ L + PIS+ASANQR
Sbjct: 357 TSLTVPSIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQR 400
>sp|P43329|HRPA_ECOLI ATP-dependent RNA helicase HrpA OS=Escherichia coli (strain K12)
GN=hrpA PE=3 SV=3
Length = 1300
Score = 227 bits (578), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 132/329 (40%), Positives = 197/329 (59%), Gaps = 32/329 (9%)
Query: 328 TLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAA 387
LP+ ++++L+A+ ++ V+++ GETGSGKTTQ+P+ E G +G IG TQ RR+AA
Sbjct: 76 NLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLAA 135
Query: 388 MSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREIVLEPSLESYSVLI 447
+VA R+++E+ + G +GY +RF D SD T++K MTDG+LL EI + L Y +I
Sbjct: 136 RTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLAEIQQDRLLMQYDTII 195
Query: 448 -------------------DLINYRPDLKLLISSATLDAENFSDYFGSAPIFKIPRRRYH 488
+L+ RPDLK++I+SAT+D E FS +F +API ++ R Y
Sbjct: 196 IDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSRHFNNAPIIEVSGRTYP 255
Query: 489 VELFYTK-APEADYIE----AAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTR 543
VE+ Y EAD E AI A+ E GDIL+F++G+ + + L +
Sbjct: 256 VEVRYRPIVEEADDTERDQLQAIFDAVDELSQESHGDILIFMSGEREIRDTADALNK--- 312
Query: 544 GLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPG 603
L + E I P+Y L Q ++F+ R++VLATN+AETSLT+ GIKYVIDPG
Sbjct: 313 -LNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLATNVAETSLTVPGIKYVIDPG 367
Query: 604 FAKVKSYNPKTGMESLLVNPISKASANQR 632
A++ Y+ +T ++ L + PIS+ASANQR
Sbjct: 368 TARISRYSYRTKVQRLPIEPISQASANQR 396
>sp|O17438|DHX15_STRPU Putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
(Fragment) OS=Strongylocentrotus purpuratus GN=PRP1 PE=2
SV=1
Length = 455
Score = 219 bits (558), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 120/238 (50%), Positives = 158/238 (66%), Gaps = 26/238 (10%)
Query: 422 LKYMTDGMLLREIVLEPSLESYSVLI-----------DLI--------NYRPDLKLLISS 462
+KYMTDGMLLRE + +P LE Y V++ D++ R DLKL++ S
Sbjct: 1 IKYMTDGMLLREGMTDPLLERYGVILLDEAHERTVATDILMGLLKEVEKQRSDLKLVVMS 60
Query: 463 ATLDAENFSDYFGSAPIFKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPI-GDI 521
ATLDA F YF +AP+ +P R + VE+FYT PE DY+EAAI T +QIH+ E + GD+
Sbjct: 61 ATLDAGKFQHYFDNAPLMTVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEVEGDV 120
Query: 522 LVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTP----EGA 577
L+FLTGQ++ E A + +K+ LG ++ +L P+Y LP +Q +IFE P GA
Sbjct: 121 LLFLTGQEEIEEACKRIKREVDNLGPEVGDLKTIPLYSTLPPAMQQRIFEHAPPNKANGA 180
Query: 578 --RKVVLATNIAETSLTIDGIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQRT 633
RKVV++TNIAETSLTIDG+ +VIDPGFAK K YNP+ +ESLLV+PISKASA QR
Sbjct: 181 IGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRV 238
>sp|Q9DBV3|DHX34_MOUSE Probable ATP-dependent RNA helicase DHX34 OS=Mus musculus GN=Dhx34
PE=2 SV=2
Length = 1145
Score = 218 bits (554), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 130/345 (37%), Positives = 191/345 (55%), Gaps = 39/345 (11%)
Query: 319 LEMLQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIG 378
L LQ ER LPI + +LQ + E+ V+V+ G+TG GK+TQ+PQYL AG++ +
Sbjct: 154 LAKLQRERAALPIAQYGNRILQTLKEHQVVVVAGDTGCGKSTQVPQYLLAAGFSH---VA 210
Query: 379 CTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREIVLEP 438
CTQ RR+A +S+A RV E + G +VGY IRFE S T + ++T G+LLR+I EP
Sbjct: 211 CTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFESTRSAATKIVFLTVGLLLRQIQREP 270
Query: 439 SLESYSVLI-------------------DLINYRPDLKLLISSATLDAENFSDYFGSAPI 479
SL Y VLI L+ RPDLK+++ SAT++ FS YF AP+
Sbjct: 271 SLPQYQVLIVDEVHERHLHNDFLLGVLQRLLPQRPDLKVILMSATINISLFSSYFSHAPV 330
Query: 480 FKIPRRRYHVELFYTKAPEADYIEA--------AIVTALQIHVN----EPIGDILVFLTG 527
++P R + + + Y + EAD + + L+ N E GD+LVFL+G
Sbjct: 331 VQVPGRLFPITVVY-QPQEADQTASKSEKLDPRPFLRVLEAIDNKYPPEERGDLLVFLSG 389
Query: 528 QDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIA 587
+ T + + + ++ P++ L Q K+F+ P G RK +L+TNIA
Sbjct: 390 MAEITTVLDA----AQAYASLTQRWVVLPLHSALSVSDQDKVFDVAPAGVRKCILSTNIA 445
Query: 588 ETSLTIDGIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQR 632
ETS+TIDGI++V+D G K SY+P+ ++ L IS+ASA QR
Sbjct: 446 ETSVTIDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQR 490
>sp|Q14147|DHX34_HUMAN Probable ATP-dependent RNA helicase DHX34 OS=Homo sapiens GN=DHX34
PE=1 SV=2
Length = 1143
Score = 216 bits (549), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 129/344 (37%), Positives = 189/344 (54%), Gaps = 37/344 (10%)
Query: 319 LEMLQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIG 378
L LQ ER LPI + +LQ + E+ V+V+ G+TG GK+TQ+PQYL AG++ +
Sbjct: 152 LAKLQRERAALPIAQYGNRILQTLKEHQVVVVAGDTGCGKSTQVPQYLLAAGFSH---VA 208
Query: 379 CTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREIVLEP 438
CTQ RR+A +S+A RV E + G +VGY IRFE S T + ++T G+LLR+I EP
Sbjct: 209 CTQPRRIACISLAKRVGFESLSQYGSQVGYQIRFESTRSAATKIVFLTVGLLLRQIQREP 268
Query: 439 SLESYSVLI-------------------DLINYRPDLKLLISSATLDAENFSDYFGSAPI 479
SL Y VLI L+ RPDLK+++ SAT++ FS YF +AP+
Sbjct: 269 SLPQYEVLIVDEVHERHLHNDFLLGVLQRLLPTRPDLKVILMSATINISLFSSYFSNAPV 328
Query: 480 FKIPRRRYHVELFY---------TKAPEADYIEAAIVTALQIHVNEP--IGDILVFLTGQ 528
++P R + + + Y +K+ + D V H P GD+LVFL+G
Sbjct: 329 VQVPGRLFPITVVYQPQEAEPTTSKSEKLDPRPFLRVLESIDHKYPPEERGDLLVFLSGM 388
Query: 529 DQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAE 588
+ E + + ++ P++ L Q K+F+ P G RK +L+TNIAE
Sbjct: 389 AEISAVLEA----AQTYASHTQRWVVLPLHSALSVADQDKVFDVAPPGVRKCILSTNIAE 444
Query: 589 TSLTIDGIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQR 632
TS+TIDGI++V+D G K SY+P+ ++ L IS+ASA QR
Sbjct: 445 TSVTIDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQR 488
>sp|Q9HDY4|YK16_SCHPO Putative ATP-dependent RNA helicase PB1A10.06c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAPB1A10.06c PE=3 SV=1
Length = 1183
Score = 207 bits (526), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 136/393 (34%), Positives = 201/393 (51%), Gaps = 83/393 (21%)
Query: 322 LQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYT-----KQGK 376
+QE R LPI + +++ + V++I G TGSGKTTQ+PQ+L+EAG++ G
Sbjct: 391 IQESRLALPIVAEEQRIMEQIFANDVVIICGATGSGKTTQLPQFLFEAGFSSPESENPGM 450
Query: 377 IGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREIVL 436
I TQ RRVAA+S+A RVS+E+ +V Y IRF+ + T +K+MTDG+LLRE+
Sbjct: 451 IAITQPRRVAAVSIAKRVSEEL-TGFSSKVSYQIRFDSTINPDTAIKFMTDGILLRELSS 509
Query: 437 EPSLESYS-VLIDLINYRP----------------------------DLKLLISSATLDA 467
+ L +YS V++D + R LKL+I SATL
Sbjct: 510 DFLLTAYSAVIVDEAHERSVNTDILLGLLSRIVRLRREMSKSDQKVKPLKLIIMSATLRV 569
Query: 468 ENFSD----YFGSAPIFKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILV 523
+FS+ + PI KI R+Y V + + + + DY++ A IH P G ILV
Sbjct: 570 TDFSENKLLFSVPPPIIKIDARQYPVSIHFNRTTKPDYLQDAFDKVCLIHKRLPAGSILV 629
Query: 524 FLTGQDQFETAEEILKQR----TRGLGTKIAELI-------------------------- 553
FLTGQ + E ++L++R R L ++ ++
Sbjct: 630 FLTGQQEVEQLCQMLRKRFVRSFRPLKSRARIVVSRKTMSVENEDLQSETEDIDQVPTSS 689
Query: 554 --------------ICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYV 599
+ P+Y L TE Q K+F+ +PEG R ++ATN+AETS+TI I+YV
Sbjct: 690 SSSVTYDDESEPMYVLPLYSLLTTEDQMKVFDSSPEGHRMCIVATNVAETSITIPNIRYV 749
Query: 600 IDPGFAKVKSYNPKTGMESLLVNPISKASANQR 632
+D G AK + YN KT ++ V ISKA+A+QR
Sbjct: 750 VDCGKAKERVYNEKTSVQKFEVRWISKANADQR 782
>sp|Q7L2E3|DHX30_HUMAN Putative ATP-dependent RNA helicase DHX30 OS=Homo sapiens GN=DHX30
PE=1 SV=1
Length = 1194
Score = 196 bits (497), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 132/358 (36%), Positives = 196/358 (54%), Gaps = 52/358 (14%)
Query: 322 LQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGK----- 376
+ +E LP+ P R+ +L A+ ++PV+VI G+TG GKTT+IPQ L E Y +G+
Sbjct: 427 VWQEAPQLPVDPHRDTILNAIEQHPVVVISGDTGCGKTTRIPQLLLER-YVTEGRGARCN 485
Query: 377 IGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFED-CTSDKTVLKYMTDGMLLREIV 435
+ TQ RR++A+SVA RVS E+G L VG+ +R E S L + T G+LLR++
Sbjct: 486 VIITQPRRISAVSVAQRVSHELGPSLRRNVGFQVRLESKPPSRGGALLFCTVGILLRKLQ 545
Query: 436 LEPSLESYS-VLIDLINYR------------------PDLKLLISSATLDAENFSDYFGS 476
PSLE S V++D ++ R P L+L++ SAT D E FS YFG
Sbjct: 546 SNPSLEGVSHVIVDEVHERDVNTDFLLILLKGLQRLNPALRLVLMSATGDNERFSRYFGG 605
Query: 477 APIFKIPRRRYHVELFY-----TKAPEADYI----------EAAI----VTALQIHVN-- 515
P+ K+P Y V+ Y K + Y+ E A+ VT L +H++
Sbjct: 606 CPVIKVPGFMYPVKEHYLEDILAKLGKHQYLHRHRHHESEDECALDLDLVTDLVLHIDAR 665
Query: 516 -EPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTP 574
EP G IL FL G + + ++ L++ LG ++ +I P++ N+P Q IF+ P
Sbjct: 666 GEP-GGILCFLPGWQEIKGVQQRLQE---ALGMHESKYLILPVHSNIPMMDQKAIFQQPP 721
Query: 575 EGARKVVLATNIAETSLTIDGIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQR 632
G RK+VLATNIAETS+TI+ I +V+D G K + Y+ KT + L +S+A+ QR
Sbjct: 722 VGVRKIVLATNIAETSITINDIVHVVDSGLHKEERYDLKTKVSCLETVWVSRANVIQR 779
>sp|Q5R607|DHX30_PONAB Putative ATP-dependent RNA helicase DHX30 OS=Pongo abelii GN=DHX30
PE=2 SV=1
Length = 1194
Score = 193 bits (491), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 131/358 (36%), Positives = 195/358 (54%), Gaps = 52/358 (14%)
Query: 322 LQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGK----- 376
+ +E LP+ P R+ +L A+ ++PV+VI G+TG GKTT+IPQ L E Y +G+
Sbjct: 427 VWQEAPQLPVDPHRDTILNAIEQHPVVVISGDTGCGKTTRIPQLLLER-YVTEGRGARCN 485
Query: 377 IGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKT-VLKYMTDGMLLREIV 435
+ TQ RR++A+SVA RVS E+G L VG+ +R E + L + T G+LLR++
Sbjct: 486 VIITQPRRISAVSVAQRVSHELGPSLRRNVGFQVRLESKPPARGGALLFCTVGILLRKLQ 545
Query: 436 LEPSLESYS-VLIDLINYR------------------PDLKLLISSATLDAENFSDYFGS 476
PSLE S V++D ++ R P L+L++ SAT D E FS YFG
Sbjct: 546 SNPSLEGVSHVIVDEVHERDVNTDFLLILLKGLQRLNPALRLVLMSATGDNERFSRYFGG 605
Query: 477 APIFKIPRRRYHVELFY-----TKAPEADYI----------EAAI----VTALQIHVN-- 515
P+ K+P Y V+ Y K + Y+ E A+ VT L +H++
Sbjct: 606 CPVIKVPGFMYPVKEHYLEDILAKLGKHQYLHRHRHHESEDECALDLDLVTDLVLHIDAR 665
Query: 516 -EPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTP 574
EP G IL FL G + + ++ L++ LG ++ +I P++ N+P Q IF+ P
Sbjct: 666 GEP-GGILCFLPGWQEIKGVQQRLQE---ALGMHESKYLILPVHSNIPMMDQKAIFQQPP 721
Query: 575 EGARKVVLATNIAETSLTIDGIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQR 632
G RK+VLATNIAETS TI+ I +V+D G K + Y+ KT + L +S+A+ QR
Sbjct: 722 VGVRKIVLATNIAETSTTINDIVHVVDSGLHKEERYDLKTKVSCLETVWVSRANVIQR 779
>sp|Q99PU8|DHX30_MOUSE Putative ATP-dependent RNA helicase DHX30 OS=Mus musculus GN=Dhx30
PE=2 SV=1
Length = 1217
Score = 193 bits (490), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 128/358 (35%), Positives = 195/358 (54%), Gaps = 52/358 (14%)
Query: 322 LQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGK----- 376
+ +E LP+ P R+ +L A+ ++PV+VI G+TG GKTT+IPQ L E Y +G+
Sbjct: 450 IWQEAPQLPVDPHRDTILSAIEQHPVVVISGDTGCGKTTRIPQLLLER-YVTEGRGARCN 508
Query: 377 IGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKT-VLKYMTDGMLLREIV 435
+ TQ RR++A+SVA RVS E+G L VG+ +R E + L + T G+LLR++
Sbjct: 509 VIITQPRRISAVSVAQRVSHELGPSLRRNVGFQVRLESKPPARGGALLFCTVGILLRKLQ 568
Query: 436 LEPSLESYS-VLIDLINYR------------------PDLKLLISSATLDAENFSDYFGS 476
PSLE S V++D ++ R P L+L++ SAT D E FS YFG
Sbjct: 569 SNPSLEGVSHVIVDEVHERDVNTDFLLILLKGLQRLNPALRLVLMSATGDNERFSRYFGG 628
Query: 477 APIFKIPRRRYHVELFY-----TKAPEADY--------------IEAAIVTALQIHVN-- 515
P+ K+P Y V+ Y K + Y ++ +VT L +H++
Sbjct: 629 CPVIKVPGFMYPVKEHYLEDILAKLGKHQYPHRHRHHESEDECALDLDLVTDLVLHIDAR 688
Query: 516 -EPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTP 574
EP G IL FL G + + ++ L++ LG ++ +I P++ N+P Q IF+ P
Sbjct: 689 GEP-GGILCFLPGWQEIKGVQQRLQE---ALGMHESKYLILPVHSNIPMMDQKAIFQQPP 744
Query: 575 EGARKVVLATNIAETSLTIDGIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQR 632
G RK+VLATNIAETS+T++ I +V+D G K + Y+ KT + L +S+A+ QR
Sbjct: 745 LGVRKIVLATNIAETSITVNDIVHVVDSGLHKEERYDLKTKVSCLETVWVSRANVIQR 802
>sp|Q5BJS0|DHX30_RAT Putative ATP-dependent RNA helicase DHX30 OS=Rattus norvegicus
GN=Dhx30 PE=1 SV=1
Length = 1194
Score = 193 bits (490), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 128/358 (35%), Positives = 195/358 (54%), Gaps = 52/358 (14%)
Query: 322 LQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGK----- 376
+ +E LP+ P R+ +L A+ ++PV+VI G+TG GKTT+IPQ L E Y +G+
Sbjct: 427 IWQEAPQLPVDPHRDTILSAIEQHPVVVISGDTGCGKTTRIPQLLLER-YVTEGRGARCN 485
Query: 377 IGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKT-VLKYMTDGMLLREIV 435
+ TQ RR++A+SVA RVS E+G L VG+ +R E + L + T G+LLR++
Sbjct: 486 VIITQPRRISAVSVAQRVSHELGPSLRRNVGFQVRLESKPPARGGALLFCTVGILLRKLQ 545
Query: 436 LEPSLESYS-VLIDLINYR------------------PDLKLLISSATLDAENFSDYFGS 476
PSLE S V++D ++ R P L+L++ SAT D E FS YFG
Sbjct: 546 SNPSLEGVSHVIVDEVHERDVNTDFLLILLKGLQRLNPALRLVLMSATGDNERFSRYFGG 605
Query: 477 APIFKIPRRRYHVELFY-----TKAPEADY--------------IEAAIVTALQIHVN-- 515
P+ K+P Y V+ Y K + Y ++ +VT L +H++
Sbjct: 606 CPVIKVPGFMYPVKEHYLEDILAKLGKHQYPHRHRHHESEDECALDLDLVTDLVLHIDAR 665
Query: 516 -EPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTP 574
EP G IL FL G + + ++ L++ LG ++ +I P++ N+P Q IF+ P
Sbjct: 666 GEP-GGILCFLPGWQEIKGVQQRLQE---ALGMHESKYLILPVHSNIPMMDQKAIFQQPP 721
Query: 575 EGARKVVLATNIAETSLTIDGIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQR 632
G RK+VLATNIAETS+T++ I +V+D G K + Y+ KT + L +S+A+ QR
Sbjct: 722 LGVRKIVLATNIAETSITVNDIVHVVDSGLHKEERYDLKTKVSCLETVWVSRANVIQR 779
>sp|Q2NKY8|DHX30_BOVIN Putative ATP-dependent RNA helicase DHX30 OS=Bos taurus GN=DHX30
PE=2 SV=1
Length = 1220
Score = 192 bits (488), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 129/358 (36%), Positives = 193/358 (53%), Gaps = 52/358 (14%)
Query: 322 LQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGK----- 376
+ +E LP+ P R+ +L A+ ++PV+VI G+TG GKTT+IPQ L E Y +G+
Sbjct: 453 VWQEAPQLPVDPHRDTILNAIEQHPVVVIAGDTGCGKTTRIPQLLLER-YVTEGRGARCN 511
Query: 377 IGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKT-VLKYMTDGMLLREIV 435
+ TQ RR++A+SVA RVS E+G L VG+ +R E + L + T G+LLR++
Sbjct: 512 VIITQPRRISAVSVAQRVSHELGPTLRRNVGFQVRLESKPPARGGALLFCTVGILLRKLQ 571
Query: 436 LEPSLESYS-VLID------------------LINYRPDLKLLISSATLDAENFSDYFGS 476
PSLE S V++D L P L+L++ SAT D E FS YFG
Sbjct: 572 SNPSLEGVSHVVVDEEHERDVNTDFLLILLKGLQRLNPALRLVLMSATGDNERFSRYFGG 631
Query: 477 APIFKIPRRRYHVELFY-----TKAPEADY--------------IEAAIVTALQIHVN-- 515
P+ K+P Y V+ Y K + Y ++ +VT L +H++
Sbjct: 632 CPVIKVPGFMYPVKEHYLEDILAKLGKHQYPHRHRHHESEDECALDLDLVTDLVLHIDAR 691
Query: 516 -EPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTP 574
EP G IL FL G + + ++ L++ LG ++ +I P++ N+P Q IF+ P
Sbjct: 692 GEP-GGILCFLPGWQEIKGVQQRLQE---ALGMHESKYLILPVHSNIPMMDQKAIFQQPP 747
Query: 575 EGARKVVLATNIAETSLTIDGIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQR 632
G RK+VLATNIAETS+TI+ I +V+D G K + Y+ KT + L +S+A+ QR
Sbjct: 748 IGVRKIVLATNIAETSITINDIVHVVDSGLHKEERYDLKTKVSCLETVWVSRANVIQR 805
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.133 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 227,594,827
Number of Sequences: 539616
Number of extensions: 10012827
Number of successful extensions: 51418
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 1129
Number of HSP's that attempted gapping in prelim test: 44482
Number of HSP's gapped (non-prelim): 4375
length of query: 633
length of database: 191,569,459
effective HSP length: 124
effective length of query: 509
effective length of database: 124,657,075
effective search space: 63450451175
effective search space used: 63450451175
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)