Query 035699
Match_columns 633
No_of_seqs 355 out of 1481
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 05:29:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035699.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035699hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0923 mRNA splicing factor A 100.0 1E-125 2E-130 1022.3 37.6 484 145-633 39-588 (902)
2 KOG0922 DEAH-box RNA helicase 100.0 3E-79 6.5E-84 669.2 30.3 315 318-633 39-372 (674)
3 KOG0924 mRNA splicing factor A 100.0 2.8E-74 6.1E-79 623.1 24.9 315 319-633 345-679 (1042)
4 COG1643 HrpA HrpA-like helicas 100.0 6.4E-69 1.4E-73 617.3 31.6 311 318-633 38-369 (845)
5 KOG0925 mRNA splicing factor A 100.0 8.4E-68 1.8E-72 557.2 23.1 312 317-633 34-369 (699)
6 KOG0926 DEAH-box RNA helicase 100.0 1.2E-60 2.7E-65 524.2 27.2 315 318-633 244-686 (1172)
7 KOG0920 ATP-dependent RNA heli 100.0 4.8E-60 1E-64 541.9 24.7 315 317-633 160-526 (924)
8 PRK11131 ATP-dependent RNA hel 100.0 1.1E-57 2.3E-62 540.7 30.5 300 325-633 69-393 (1294)
9 TIGR01970 DEAH_box_HrpB ATP-de 100.0 2.4E-57 5.2E-62 527.8 32.0 298 329-633 1-318 (819)
10 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.3E-57 2.9E-62 541.5 30.3 301 324-633 61-386 (1283)
11 PRK11664 ATP-dependent RNA hel 100.0 1.1E-56 2.3E-61 523.2 32.5 299 328-633 3-321 (812)
12 PHA02653 RNA helicase NPH-II; 100.0 1.8E-41 3.9E-46 387.2 27.4 279 334-633 168-496 (675)
13 KOG0330 ATP-dependent RNA heli 100.0 9E-41 2E-45 346.0 17.6 285 318-617 72-391 (476)
14 KOG0345 ATP-dependent RNA heli 100.0 1.3E-38 2.8E-43 336.3 17.4 276 330-617 28-348 (567)
15 COG0513 SrmB Superfamily II DN 100.0 1E-36 2.3E-41 341.7 24.7 286 318-617 40-364 (513)
16 KOG0343 RNA Helicase [RNA proc 100.0 1.7E-37 3.6E-42 332.3 15.3 287 318-616 80-405 (758)
17 KOG0331 ATP-dependent RNA heli 100.0 3.3E-36 7.2E-41 329.1 21.0 278 328-617 112-432 (519)
18 KOG0342 ATP-dependent RNA heli 100.0 4.1E-36 9E-41 319.3 15.7 276 329-617 103-421 (543)
19 KOG0338 ATP-dependent RNA heli 100.0 4E-36 8.7E-41 319.4 14.9 288 318-617 192-517 (691)
20 KOG0340 ATP-dependent RNA heli 100.0 7.4E-35 1.6E-39 299.2 18.4 273 332-617 31-345 (442)
21 PRK11776 ATP-dependent RNA hel 100.0 9.8E-34 2.1E-38 314.4 25.3 274 330-616 26-332 (460)
22 PRK04837 ATP-dependent RNA hel 100.0 2.4E-33 5.2E-38 308.1 24.2 273 330-616 30-345 (423)
23 KOG0333 U5 snRNP-like RNA heli 100.0 5.2E-34 1.1E-38 304.4 16.7 286 317-617 255-608 (673)
24 KOG0328 Predicted ATP-dependen 100.0 9E-34 1.9E-38 283.6 17.2 287 317-617 37-357 (400)
25 PRK11634 ATP-dependent RNA hel 100.0 4.7E-33 1E-37 318.4 25.3 276 328-616 26-335 (629)
26 PLN00206 DEAD-box ATP-dependen 100.0 2.7E-32 5.9E-37 307.0 24.7 274 330-616 143-458 (518)
27 PRK04537 ATP-dependent RNA hel 100.0 2E-32 4.4E-37 310.8 23.2 273 330-616 31-347 (572)
28 PTZ00110 helicase; Provisional 100.0 2.9E-32 6.2E-37 308.3 24.2 275 330-616 152-467 (545)
29 PRK11192 ATP-dependent RNA hel 100.0 8E-32 1.7E-36 296.9 25.0 277 329-617 22-336 (434)
30 PRK10590 ATP-dependent RNA hel 100.0 7.9E-32 1.7E-36 298.9 24.0 274 330-616 23-335 (456)
31 KOG0326 ATP-dependent RNA heli 100.0 2.3E-33 4.9E-38 284.5 8.8 276 327-617 105-413 (459)
32 KOG0347 RNA helicase [RNA proc 100.0 6.2E-33 1.4E-37 297.3 9.5 289 318-617 192-554 (731)
33 KOG0348 ATP-dependent RNA heli 100.0 1.3E-31 2.9E-36 286.4 19.4 291 327-617 156-538 (708)
34 PRK01297 ATP-dependent RNA hel 100.0 7.6E-31 1.7E-35 292.5 25.8 275 328-616 107-425 (475)
35 KOG0921 Dosage compensation co 100.0 3.7E-32 8E-37 302.7 13.7 312 318-633 366-756 (1282)
36 PTZ00424 helicase 45; Provisio 100.0 3E-30 6.6E-35 280.7 25.2 274 330-616 50-357 (401)
37 KOG0332 ATP-dependent RNA heli 100.0 6.4E-31 1.4E-35 271.6 17.3 271 333-616 115-426 (477)
38 TIGR03817 DECH_helic helicase/ 100.0 4.8E-30 1E-34 298.7 24.8 285 327-616 33-369 (742)
39 KOG0335 ATP-dependent RNA heli 100.0 4.7E-31 1E-35 284.6 14.5 286 322-617 89-428 (482)
40 PRK01172 ski2-like helicase; P 100.0 2.5E-29 5.5E-34 291.4 22.1 289 328-633 20-357 (674)
41 PRK02362 ski2-like helicase; P 100.0 1.7E-28 3.8E-33 286.9 23.6 290 329-633 22-376 (737)
42 PRK13767 ATP-dependent helicas 100.0 6E-28 1.3E-32 286.1 21.5 282 331-617 33-381 (876)
43 KOG0336 ATP-dependent RNA heli 100.0 1.2E-28 2.6E-33 256.7 13.4 272 333-616 245-555 (629)
44 KOG0339 ATP-dependent RNA heli 100.0 7.1E-29 1.5E-33 263.9 11.6 272 332-616 247-558 (731)
45 KOG0350 DEAD-box ATP-dependent 100.0 4.8E-28 1E-32 257.8 15.9 287 325-617 154-524 (620)
46 TIGR00614 recQ_fam ATP-depende 100.0 4.8E-27 1.1E-31 261.7 23.7 267 331-616 12-316 (470)
47 KOG0346 RNA helicase [RNA proc 99.9 4.4E-27 9.6E-32 247.3 15.7 278 327-617 39-394 (569)
48 PRK09401 reverse gyrase; Revie 99.9 4.1E-26 8.9E-31 274.9 25.0 255 328-606 78-410 (1176)
49 PRK00254 ski2-like helicase; P 99.9 4.7E-26 1E-30 265.8 24.1 268 329-601 22-345 (720)
50 PRK11057 ATP-dependent DNA hel 99.9 2.7E-26 5.8E-31 262.9 20.8 268 330-616 25-326 (607)
51 PLN03137 ATP-dependent DNA hel 99.9 6.9E-26 1.5E-30 265.2 21.8 269 330-616 460-770 (1195)
52 PRK10689 transcription-repair 99.9 7.1E-26 1.5E-30 272.3 20.9 257 331-606 601-895 (1147)
53 KOG0341 DEAD-box protein abstr 99.9 1.2E-27 2.6E-32 247.8 4.7 285 331-628 193-529 (610)
54 TIGR00580 mfd transcription-re 99.9 1.8E-25 3.9E-30 263.8 23.4 257 331-606 452-741 (926)
55 KOG0334 RNA helicase [RNA proc 99.9 4E-26 8.7E-31 261.4 16.5 277 330-618 387-705 (997)
56 PRK09751 putative ATP-dependen 99.9 1E-25 2.2E-30 272.9 20.1 265 350-617 1-368 (1490)
57 KOG0327 Translation initiation 99.9 9E-26 1.9E-30 235.3 16.2 284 317-617 36-354 (397)
58 TIGR02621 cas3_GSU0051 CRISPR- 99.9 3.6E-25 7.8E-30 255.6 22.7 274 328-616 13-373 (844)
59 PRK10917 ATP-dependent DNA hel 99.9 6.5E-25 1.4E-29 254.3 24.4 260 330-607 261-561 (681)
60 TIGR00643 recG ATP-dependent D 99.9 7.3E-25 1.6E-29 252.1 22.7 259 331-607 236-538 (630)
61 TIGR01587 cas3_core CRISPR-ass 99.9 2.3E-25 5E-30 239.2 16.9 257 347-616 1-315 (358)
62 TIGR01054 rgy reverse gyrase. 99.9 1.4E-24 3.1E-29 261.9 25.5 259 326-608 74-411 (1171)
63 COG1201 Lhr Lhr-like helicases 99.9 1.4E-24 3E-29 249.6 22.9 287 331-627 23-355 (814)
64 TIGR01389 recQ ATP-dependent D 99.9 7.6E-25 1.7E-29 250.5 19.3 266 331-616 14-314 (591)
65 KOG4284 DEAD box protein [Tran 99.9 1.4E-25 3.1E-30 244.0 12.4 279 328-616 46-362 (980)
66 TIGR03158 cas3_cyano CRISPR-as 99.9 2.4E-23 5.3E-28 224.2 24.8 263 334-616 1-355 (357)
67 PRK14701 reverse gyrase; Provi 99.9 1.7E-23 3.7E-28 257.4 22.4 257 328-607 77-413 (1638)
68 KOG0344 ATP-dependent RNA heli 99.9 2.6E-24 5.7E-29 234.1 12.1 277 329-617 158-479 (593)
69 KOG0337 ATP-dependent RNA heli 99.9 8.6E-24 1.9E-28 221.7 14.4 285 318-617 32-352 (529)
70 COG1204 Superfamily II helicas 99.9 5.3E-22 1.1E-26 230.4 20.4 276 332-616 34-375 (766)
71 TIGR03714 secA2 accessory Sec 99.9 6.9E-21 1.5E-25 218.4 23.5 269 326-616 64-520 (762)
72 PHA02558 uvsW UvsW helicase; P 99.9 1E-20 2.2E-25 212.6 23.8 273 328-615 112-434 (501)
73 PRK09200 preprotein translocas 99.9 4.8E-21 1E-25 221.3 18.4 273 326-617 72-525 (790)
74 COG1205 Distinct helicase fami 99.9 7.4E-21 1.6E-25 223.5 19.4 278 326-607 66-394 (851)
75 PRK12898 secA preprotein trans 99.9 1E-20 2.3E-25 214.5 19.6 147 457-617 410-570 (656)
76 TIGR00963 secA preprotein tran 99.8 6.3E-20 1.4E-24 209.4 19.4 273 326-617 50-501 (745)
77 PRK13766 Hef nuclease; Provisi 99.8 3E-19 6.4E-24 210.6 23.0 270 328-608 13-454 (773)
78 PRK05580 primosome assembly pr 99.8 9.5E-19 2.1E-23 202.7 20.9 262 328-605 142-510 (679)
79 COG4098 comFA Superfamily II D 99.8 1.4E-18 3E-23 179.2 19.7 243 336-600 107-378 (441)
80 COG1202 Superfamily II helicas 99.8 1.1E-18 2.3E-23 189.2 18.5 272 318-599 204-512 (830)
81 COG1111 MPH1 ERCC4-like helica 99.8 3.5E-18 7.5E-23 184.3 20.9 265 333-603 18-451 (542)
82 PRK09694 helicase Cas3; Provis 99.8 7.9E-18 1.7E-22 197.7 22.8 268 330-606 286-649 (878)
83 PRK13104 secA preprotein trans 99.8 4.1E-18 9E-23 197.1 19.1 250 326-594 76-509 (896)
84 COG4581 Superfamily II RNA hel 99.8 3.9E-18 8.4E-23 199.3 17.4 277 326-606 115-498 (1041)
85 TIGR00595 priA primosomal prot 99.7 1.6E-17 3.4E-22 186.5 16.3 240 349-604 1-341 (505)
86 TIGR00603 rad25 DNA repair hel 99.7 1.3E-16 2.9E-21 183.1 24.0 258 328-605 253-570 (732)
87 KOG0354 DEAD-box like helicase 99.7 2.2E-16 4.7E-21 178.8 19.4 274 326-605 58-502 (746)
88 COG1200 RecG RecG-like helicas 99.7 1.4E-16 3E-21 178.2 17.4 235 349-600 287-556 (677)
89 KOG0952 DNA/RNA helicase MER3/ 99.7 2.2E-16 4.7E-21 180.8 19.3 273 336-616 117-457 (1230)
90 KOG0329 ATP-dependent RNA heli 99.7 9.3E-18 2E-22 166.9 7.0 247 319-614 54-336 (387)
91 COG0514 RecQ Superfamily II DN 99.7 1.8E-16 3.9E-21 177.4 16.1 264 335-615 22-319 (590)
92 PRK12904 preprotein translocas 99.7 3E-16 6.5E-21 181.5 16.7 250 326-594 75-495 (830)
93 KOG0349 Putative DEAD-box RNA 99.7 7E-17 1.5E-21 170.1 10.3 235 376-616 288-598 (725)
94 COG1197 Mfd Transcription-repa 99.7 6.8E-16 1.5E-20 180.9 19.3 232 349-600 619-878 (1139)
95 KOG0947 Cytoplasmic exosomal R 99.6 5.6E-15 1.2E-19 167.7 20.3 268 328-602 295-681 (1248)
96 KOG0948 Nuclear exosomal RNA h 99.6 2.4E-15 5.3E-20 167.1 16.8 287 327-631 126-516 (1041)
97 PRK13107 preprotein translocas 99.6 2.8E-15 6.1E-20 173.4 17.0 83 499-594 432-514 (908)
98 COG1061 SSL2 DNA or RNA helica 99.6 2.1E-14 4.5E-19 159.1 20.7 260 326-603 32-358 (442)
99 PRK11448 hsdR type I restricti 99.6 5.7E-14 1.2E-18 169.6 25.2 274 330-608 413-787 (1123)
100 PRK12906 secA preprotein trans 99.6 3.9E-14 8.4E-19 163.6 15.2 105 499-616 423-536 (796)
101 PF00270 DEAD: DEAD/DEAH box h 99.5 7.1E-14 1.5E-18 133.1 13.4 137 332-470 1-166 (169)
102 PRK04914 ATP-dependent helicas 99.5 2E-13 4.2E-18 162.0 19.7 116 506-629 481-607 (956)
103 KOG0951 RNA helicase BRR2, DEA 99.5 1.8E-13 3.9E-18 159.0 18.3 281 331-617 310-669 (1674)
104 PRK12899 secA preprotein trans 99.5 5.6E-13 1.2E-17 154.8 21.1 113 327-441 87-207 (970)
105 COG1203 CRISPR-associated heli 99.5 1.1E-12 2.4E-17 153.7 17.8 259 332-600 197-516 (733)
106 cd00268 DEADc DEAD-box helicas 99.5 5.8E-13 1.3E-17 131.4 12.6 136 330-466 21-185 (203)
107 KOG0351 ATP-dependent DNA heli 99.4 7.5E-13 1.6E-17 156.0 12.7 266 333-615 267-574 (941)
108 COG1110 Reverse gyrase [DNA re 99.4 2.1E-11 4.5E-16 140.7 20.9 254 329-608 81-419 (1187)
109 smart00311 PWI PWI, domain in 99.3 5.2E-12 1.1E-16 105.8 6.3 61 6-69 8-68 (74)
110 KOG0352 ATP-dependent DNA heli 99.3 3.2E-11 6.9E-16 127.9 11.8 254 335-607 26-335 (641)
111 KOG0950 DNA polymerase theta/e 99.2 2E-10 4.4E-15 132.0 15.7 278 326-605 219-576 (1008)
112 TIGR01407 dinG_rel DnaQ family 99.2 1.5E-09 3.3E-14 129.6 21.9 101 499-608 656-758 (850)
113 smart00487 DEXDc DEAD-like hel 99.1 1.1E-09 2.4E-14 104.9 15.1 147 328-475 6-182 (201)
114 KOG0353 ATP-dependent DNA heli 99.1 9.5E-10 2.1E-14 115.1 15.1 257 332-608 96-398 (695)
115 cd00046 DEXDc DEAD-like helica 99.1 9.9E-10 2.2E-14 99.1 12.0 117 347-465 2-144 (144)
116 TIGR00348 hsdR type I site-spe 99.1 8.6E-09 1.9E-13 120.0 22.4 248 345-600 263-614 (667)
117 COG1198 PriA Primosomal protei 99.0 2.6E-09 5.6E-14 123.4 15.1 256 329-600 197-557 (730)
118 cd00079 HELICc Helicase superf 98.9 5.7E-09 1.2E-13 94.6 10.7 82 517-607 27-108 (131)
119 PRK12326 preprotein translocas 98.9 1.9E-08 4.1E-13 115.1 16.5 137 457-608 364-521 (764)
120 KOG0921 Dosage compensation co 98.9 2.7E-10 5.9E-15 129.4 -0.5 303 326-632 402-763 (1282)
121 KOG0953 Mitochondrial RNA heli 98.9 3.6E-08 7.7E-13 108.2 15.4 231 346-606 192-437 (700)
122 TIGR00631 uvrb excinuclease AB 98.9 6.2E-09 1.3E-13 120.5 10.2 90 518-616 442-537 (655)
123 PRK07246 bifunctional ATP-depe 98.9 1.7E-07 3.6E-12 111.5 21.8 99 499-612 630-731 (820)
124 PF07652 Flavi_DEAD: Flaviviru 98.8 1.2E-08 2.7E-13 95.5 8.6 114 344-465 3-136 (148)
125 CHL00122 secA preprotein trans 98.8 6.9E-08 1.5E-12 112.4 16.5 121 457-594 361-491 (870)
126 PLN03142 Probable chromatin-re 98.8 2.4E-07 5.1E-12 111.3 19.7 79 518-605 487-568 (1033)
127 PRK05298 excinuclease ABC subu 98.8 1.8E-08 3.8E-13 117.1 9.3 90 518-616 446-541 (652)
128 PRK13103 secA preprotein trans 98.8 8.5E-08 1.8E-12 112.2 14.6 83 499-594 432-514 (913)
129 COG0556 UvrB Helicase subunit 98.8 7.4E-07 1.6E-11 97.8 20.8 92 498-600 428-519 (663)
130 PRK12902 secA preprotein trans 98.7 4.3E-07 9.4E-12 105.9 18.1 83 499-594 422-506 (939)
131 PF00271 Helicase_C: Helicase 98.7 1.5E-08 3.3E-13 84.7 4.5 57 550-606 6-62 (78)
132 KOG4150 Predicted ATP-dependen 98.7 4.6E-08 1E-12 107.1 9.1 267 329-608 285-614 (1034)
133 PRK12900 secA preprotein trans 98.7 5.9E-08 1.3E-12 113.9 10.0 143 457-616 535-694 (1025)
134 KOG0949 Predicted helicase, DE 98.6 8.4E-07 1.8E-11 102.6 17.0 146 329-475 510-682 (1330)
135 smart00490 HELICc helicase sup 98.6 7.5E-08 1.6E-12 79.9 5.4 56 551-606 11-66 (82)
136 COG4096 HsdR Type I site-speci 98.6 1.6E-06 3.4E-11 99.7 17.5 256 338-606 177-510 (875)
137 PRK12903 secA preprotein trans 98.6 1.5E-06 3.3E-11 101.1 17.3 137 457-608 363-513 (925)
138 TIGR03117 cas_csf4 CRISPR-asso 98.6 1.4E-05 2.9E-10 92.2 25.0 95 501-607 454-562 (636)
139 TIGR02562 cas3_yersinia CRISPR 98.6 5.1E-06 1.1E-10 98.5 21.4 75 522-600 760-860 (1110)
140 PF04851 ResIII: Type III rest 98.5 3.9E-07 8.5E-12 87.3 9.3 133 329-466 2-183 (184)
141 PRK08074 bifunctional ATP-depe 98.3 4.6E-05 1E-09 92.2 23.4 101 499-607 734-836 (928)
142 PF01480 PWI: PWI domain; Int 98.3 6.5E-07 1.4E-11 75.7 5.2 63 6-71 3-70 (77)
143 KOG1123 RNA polymerase II tran 98.2 1.4E-05 2.9E-10 87.3 13.4 250 330-602 302-614 (776)
144 PF02399 Herpes_ori_bp: Origin 98.2 0.00012 2.6E-09 85.2 19.8 234 343-598 47-347 (824)
145 PF13245 AAA_19: Part of AAA d 98.0 1.5E-05 3.3E-10 67.1 6.2 57 338-394 3-62 (76)
146 PRK14873 primosome assembly pr 97.9 6.7E-05 1.5E-09 87.3 12.6 115 351-472 166-310 (665)
147 KOG0951 RNA helicase BRR2, DEA 97.9 0.00019 4.2E-09 85.5 15.7 234 343-586 1157-1440(1674)
148 COG1419 FlhF Flagellar GTP-bin 97.8 0.00021 4.5E-09 77.6 13.0 166 345-528 203-375 (407)
149 PF06862 DUF1253: Protein of u 97.7 0.0025 5.3E-08 70.6 18.5 185 419-612 131-387 (442)
150 PF13086 AAA_11: AAA domain; P 97.5 0.00021 4.7E-09 70.9 7.3 65 332-396 3-75 (236)
151 PRK12723 flagellar biosynthesi 97.3 0.00018 4E-09 78.6 4.4 153 344-509 173-335 (388)
152 PF00580 UvrD-helicase: UvrD/R 97.3 0.0004 8.6E-09 72.4 6.5 66 332-399 2-70 (315)
153 smart00489 DEXDc3 DEAD-like he 97.2 0.00064 1.4E-08 71.7 7.3 61 332-392 10-79 (289)
154 smart00488 DEXDc2 DEAD-like he 97.2 0.00064 1.4E-08 71.7 7.3 61 332-392 10-79 (289)
155 PF00448 SRP54: SRP54-type pro 97.1 0.00039 8.5E-09 69.2 4.1 151 346-510 2-164 (196)
156 PRK12724 flagellar biosynthesi 97.1 0.00034 7.4E-09 76.9 3.2 127 345-476 223-358 (432)
157 PRK12726 flagellar biosynthesi 97.1 0.0025 5.5E-08 69.3 9.6 165 326-509 192-365 (407)
158 PRK11889 flhF flagellar biosyn 97.0 0.0026 5.7E-08 69.4 9.5 123 345-475 241-375 (436)
159 PRK05703 flhF flagellar biosyn 97.0 0.02 4.4E-07 63.6 16.7 124 342-471 218-348 (424)
160 KOG0387 Transcription-coupled 97.0 0.012 2.6E-07 68.1 14.3 88 519-618 547-636 (923)
161 KOG1803 DNA helicase [Replicat 96.9 0.0014 3E-08 73.8 6.3 62 333-395 188-250 (649)
162 PRK14721 flhF flagellar biosyn 96.9 0.0014 3E-08 72.4 6.3 152 342-510 188-350 (420)
163 KOG1000 Chromatin remodeling p 96.9 0.036 7.8E-07 61.3 16.8 82 516-606 490-573 (689)
164 PRK14722 flhF flagellar biosyn 96.9 0.0035 7.6E-08 68.3 9.1 161 341-511 133-306 (374)
165 PRK11747 dinG ATP-dependent DN 96.9 0.012 2.5E-07 69.5 13.8 138 456-608 457-618 (697)
166 TIGR00376 DNA helicase, putati 96.9 0.0021 4.6E-08 74.9 7.5 65 331-396 158-223 (637)
167 PRK06995 flhF flagellar biosyn 96.7 0.0022 4.9E-08 71.9 6.1 154 343-510 254-415 (484)
168 TIGR00604 rad3 DNA repair heli 96.7 0.017 3.6E-07 68.4 13.5 169 421-612 424-621 (705)
169 COG0653 SecA Preprotein transl 96.6 0.013 2.9E-07 68.9 11.2 81 501-594 414-494 (822)
170 PRK14974 cell division protein 96.5 0.0024 5.2E-08 68.7 4.4 116 345-466 140-265 (336)
171 PRK12727 flagellar biosynthesi 96.5 0.0097 2.1E-07 67.3 9.0 71 326-401 336-409 (559)
172 PRK14723 flhF flagellar biosyn 96.4 0.01 2.2E-07 69.9 9.0 120 344-470 184-310 (767)
173 PF13604 AAA_30: AAA domain; P 96.4 0.0074 1.6E-07 60.0 6.6 60 333-393 4-65 (196)
174 TIGR02768 TraA_Ti Ti-type conj 96.3 0.27 5.9E-06 58.6 20.5 63 328-391 350-413 (744)
175 PRK13889 conjugal transfer rel 96.3 0.12 2.5E-06 63.1 17.1 64 327-391 343-407 (988)
176 COG1199 DinG Rad3-related DNA 96.2 0.036 7.8E-07 64.9 12.4 141 456-608 404-561 (654)
177 PF02562 PhoH: PhoH-like prote 96.2 0.0058 1.2E-07 61.3 4.8 56 329-384 3-59 (205)
178 KOG0952 DNA/RNA helicase MER3/ 96.2 0.0087 1.9E-07 71.0 6.7 191 347-538 945-1173(1230)
179 PRK10536 hypothetical protein; 96.1 0.0085 1.8E-07 62.0 5.7 57 328-384 57-114 (262)
180 KOG0390 DNA repair protein, SN 96.1 0.27 5.8E-06 58.0 18.2 62 550-615 618-682 (776)
181 PRK12901 secA preprotein trans 96.1 0.034 7.4E-07 66.8 10.9 136 457-609 565-716 (1112)
182 PRK10416 signal recognition pa 96.1 0.003 6.5E-08 67.5 2.1 123 344-467 113-246 (318)
183 KOG1802 RNA helicase nonsense 96.0 0.0098 2.1E-07 67.6 5.9 69 333-402 413-481 (935)
184 KOG0385 Chromatin remodeling c 96.0 0.19 4.1E-06 58.5 16.0 84 519-615 488-574 (971)
185 PRK11747 dinG ATP-dependent DN 96.0 0.012 2.7E-07 69.3 6.9 66 337-402 36-110 (697)
186 PF00176 SNF2_N: SNF2 family N 95.9 0.062 1.3E-06 55.6 11.3 117 343-465 23-172 (299)
187 KOG2146 Splicing coactivator S 95.8 0.0067 1.4E-07 62.2 3.2 66 6-71 44-109 (354)
188 TIGR00064 ftsY signal recognit 95.8 0.0051 1.1E-07 64.4 2.4 56 345-401 72-129 (272)
189 COG4889 Predicted helicase [Ge 95.7 0.05 1.1E-06 63.8 9.6 89 521-617 463-560 (1518)
190 PF05729 NACHT: NACHT domain 95.6 0.018 3.8E-07 54.1 5.0 32 453-484 118-149 (166)
191 PRK11054 helD DNA helicase IV; 95.5 0.027 5.8E-07 66.3 7.2 70 328-399 194-266 (684)
192 TIGR03499 FlhF flagellar biosy 95.5 0.024 5.3E-07 59.5 6.0 60 343-402 192-254 (282)
193 PF13307 Helicase_C_2: Helicas 95.5 0.012 2.5E-07 57.0 3.4 88 516-612 7-98 (167)
194 TIGR02782 TrbB_P P-type conjug 95.4 0.027 5.9E-07 59.7 6.2 53 334-386 121-174 (299)
195 KOG0384 Chromodomain-helicase 95.4 0.28 6.2E-06 59.6 15.1 86 518-616 699-787 (1373)
196 COG1199 DinG Rad3-related DNA 95.4 0.022 4.7E-07 66.7 6.0 52 339-390 28-79 (654)
197 PRK10875 recD exonuclease V su 95.3 0.037 8.1E-07 64.2 7.5 64 333-396 155-221 (615)
198 PRK13833 conjugal transfer pro 95.3 0.024 5.2E-07 60.7 5.5 51 336-386 135-186 (323)
199 PF00437 T2SE: Type II/IV secr 95.3 0.016 3.5E-07 60.1 4.0 48 338-386 120-167 (270)
200 PRK10919 ATP-dependent DNA hel 95.2 0.03 6.5E-07 65.9 6.4 67 331-400 3-73 (672)
201 TIGR01447 recD exodeoxyribonuc 95.2 0.042 9.1E-07 63.6 7.3 64 333-396 148-215 (586)
202 PF13401 AAA_22: AAA domain; P 95.1 0.02 4.3E-07 52.0 3.5 59 344-402 3-66 (131)
203 KOG2340 Uncharacterized conser 95.1 0.12 2.7E-06 57.7 10.1 81 519-610 553-637 (698)
204 TIGR01074 rep ATP-dependent DN 95.1 0.065 1.4E-06 62.9 8.7 67 332-400 3-72 (664)
205 PRK13894 conjugal transfer ATP 95.0 0.04 8.6E-07 59.0 6.0 53 334-386 137-190 (319)
206 COG3973 Superfamily I DNA and 95.0 0.038 8.2E-07 62.7 5.9 66 332-399 214-284 (747)
207 TIGR00604 rad3 DNA repair heli 94.9 0.04 8.7E-07 65.2 6.4 55 336-390 20-76 (705)
208 PRK06731 flhF flagellar biosyn 94.8 0.12 2.6E-06 54.1 8.9 116 344-467 74-198 (270)
209 TIGR00959 ffh signal recogniti 94.8 0.03 6.5E-07 62.2 4.7 57 346-402 100-158 (428)
210 PRK11773 uvrD DNA-dependent he 94.5 0.06 1.3E-06 63.9 6.4 68 331-400 10-80 (721)
211 TIGR01425 SRP54_euk signal rec 94.5 0.049 1.1E-06 60.5 5.2 114 346-465 101-224 (429)
212 PRK13851 type IV secretion sys 94.4 0.045 9.9E-07 59.2 4.8 49 336-386 153-201 (344)
213 COG0552 FtsY Signal recognitio 94.4 0.024 5.2E-07 60.3 2.5 116 346-465 140-269 (340)
214 PF05970 PIF1: PIF1-like helic 94.4 0.074 1.6E-06 57.9 6.4 69 334-403 5-81 (364)
215 cd01131 PilT Pilus retraction 94.4 0.038 8.2E-07 54.9 3.8 22 347-368 3-24 (198)
216 TIGR01448 recD_rel helicase, p 94.4 0.096 2.1E-06 62.1 7.7 65 326-391 319-385 (720)
217 COG4962 CpaF Flp pilus assembl 94.4 0.042 9.2E-07 58.8 4.2 53 332-386 159-212 (355)
218 TIGR01075 uvrD DNA helicase II 94.3 0.063 1.4E-06 63.6 6.2 68 331-400 5-75 (715)
219 PRK00771 signal recognition pa 94.3 0.058 1.3E-06 60.2 5.4 57 345-402 95-153 (437)
220 PF12340 DUF3638: Protein of u 94.3 0.43 9.4E-06 48.6 11.1 111 322-435 15-146 (229)
221 PRK13900 type IV secretion sys 94.2 0.054 1.2E-06 58.4 4.8 47 338-386 153-199 (332)
222 PRK13826 Dtr system oriT relax 94.2 1.8 4E-05 53.5 18.2 63 327-390 378-441 (1102)
223 cd00009 AAA The AAA+ (ATPases 94.1 0.14 3E-06 46.0 6.7 48 336-384 8-57 (151)
224 TIGR01073 pcrA ATP-dependent D 93.9 0.13 2.9E-06 61.0 7.6 68 331-400 5-75 (726)
225 COG2804 PulE Type II secretory 93.7 0.098 2.1E-06 58.6 5.6 43 327-369 238-282 (500)
226 TIGR01420 pilT_fam pilus retra 93.6 0.073 1.6E-06 57.5 4.5 37 344-380 121-157 (343)
227 PRK10867 signal recognition pa 93.6 0.1 2.2E-06 58.2 5.6 57 346-402 101-159 (433)
228 smart00382 AAA ATPases associa 93.6 0.056 1.2E-06 48.0 2.9 25 345-369 2-26 (148)
229 COG0513 SrmB Superfamily II DN 93.5 0.49 1.1E-05 54.0 11.2 72 521-600 102-179 (513)
230 cd01130 VirB11-like_ATPase Typ 93.5 0.094 2E-06 51.4 4.6 27 338-364 18-44 (186)
231 TIGR02760 TraI_TIGR conjugativ 93.5 5.9 0.00013 52.3 21.8 231 328-577 427-686 (1960)
232 TIGR02524 dot_icm_DotB Dot/Icm 93.3 0.11 2.4E-06 56.6 5.2 29 338-366 126-155 (358)
233 COG2805 PilT Tfp pilus assembl 93.3 0.068 1.5E-06 56.2 3.4 25 345-369 125-149 (353)
234 COG1110 Reverse gyrase [DNA re 93.1 0.2 4.4E-06 60.0 7.2 78 507-587 114-191 (1187)
235 PF12846 AAA_10: AAA-like doma 93.1 0.073 1.6E-06 55.0 3.3 43 345-388 1-43 (304)
236 PF09848 DUF2075: Uncharacteri 93.1 0.17 3.6E-06 54.9 6.1 53 346-398 2-55 (352)
237 PRK10917 ATP-dependent DNA hel 92.9 0.47 1E-05 56.1 10.1 78 518-600 310-388 (681)
238 cd01129 PulE-GspE PulE/GspE Th 92.5 0.16 3.5E-06 52.9 4.9 31 337-367 71-102 (264)
239 PRK05580 primosome assembly pr 92.4 0.25 5.4E-06 58.4 6.8 74 518-600 190-263 (679)
240 TIGR02788 VirB11 P-type DNA tr 92.4 0.15 3.2E-06 54.3 4.5 42 340-383 139-180 (308)
241 PF13555 AAA_29: P-loop contai 92.3 0.093 2E-06 42.6 2.2 18 345-362 23-40 (62)
242 PRK04296 thymidine kinase; Pro 92.0 0.14 3.1E-06 50.5 3.6 37 345-382 2-38 (190)
243 KOG0347 RNA helicase [RNA proc 91.9 0.28 6.2E-06 55.2 6.1 56 521-585 266-321 (731)
244 PRK10436 hypothetical protein; 91.9 0.2 4.3E-06 56.4 5.0 38 331-368 202-241 (462)
245 KOG2253 U1 snRNP complex, subu 91.7 0.25 5.5E-06 56.4 5.5 61 6-69 596-656 (668)
246 TIGR02525 plasmid_TraJ plasmid 91.7 0.19 4E-06 55.1 4.3 23 343-365 147-169 (372)
247 PRK06526 transposase; Provisio 91.6 0.16 3.4E-06 52.7 3.5 43 339-382 92-134 (254)
248 TIGR02785 addA_Gpos recombinat 91.5 0.32 7E-06 61.2 6.7 63 334-398 5-69 (1232)
249 PRK15483 type III restriction- 91.5 0.28 6.1E-06 59.3 5.8 47 343-390 57-105 (986)
250 TIGR03877 thermo_KaiC_1 KaiC d 91.3 0.19 4.2E-06 51.2 3.8 51 342-394 18-68 (237)
251 TIGR03015 pepcterm_ATPase puta 91.3 0.46 1E-05 48.8 6.7 24 345-368 43-66 (269)
252 PF13207 AAA_17: AAA domain; P 91.2 0.17 3.7E-06 45.3 2.9 19 347-365 1-19 (121)
253 cd00984 DnaB_C DnaB helicase C 91.2 0.23 5E-06 50.3 4.2 43 339-381 7-49 (242)
254 cd01124 KaiC KaiC is a circadi 91.0 0.21 4.5E-06 48.2 3.5 45 347-393 1-45 (187)
255 COG1074 RecB ATP-dependent exo 91.0 0.28 6E-06 61.3 5.4 58 341-398 12-73 (1139)
256 TIGR00595 priA primosomal prot 91.0 0.4 8.8E-06 54.6 6.3 74 518-600 25-98 (505)
257 TIGR00580 mfd transcription-re 90.9 0.88 1.9E-05 55.5 9.4 78 518-600 500-578 (926)
258 TIGR02538 type_IV_pilB type IV 90.9 0.27 5.9E-06 56.8 4.9 39 329-367 298-338 (564)
259 cd01127 TrwB Bacterial conjuga 90.9 0.13 2.9E-06 56.9 2.2 44 344-388 41-84 (410)
260 cd01120 RecA-like_NTPases RecA 90.9 0.21 4.7E-06 46.2 3.3 33 347-380 1-33 (165)
261 TIGR02640 gas_vesic_GvpN gas v 90.8 0.27 5.8E-06 51.1 4.3 31 334-364 10-40 (262)
262 KOG1805 DNA replication helica 90.6 0.45 9.8E-06 56.8 6.3 62 333-395 673-734 (1100)
263 cd03115 SRP The signal recogni 90.4 0.35 7.6E-06 46.4 4.5 52 347-399 2-55 (173)
264 COG0630 VirB11 Type IV secreto 90.4 0.25 5.5E-06 52.8 3.8 30 338-367 136-165 (312)
265 PF01695 IstB_IS21: IstB-like 90.3 0.27 6E-06 48.1 3.7 43 339-382 41-83 (178)
266 PF13671 AAA_33: AAA domain; P 90.3 0.22 4.7E-06 45.9 2.8 22 347-368 1-22 (143)
267 COG0541 Ffh Signal recognition 90.2 0.53 1.2E-05 52.0 6.0 56 346-403 101-159 (451)
268 PF02367 UPF0079: Uncharacteri 90.1 0.35 7.5E-06 44.7 3.9 46 335-384 5-50 (123)
269 TIGR00150 HI0065_YjeE ATPase, 90.1 0.34 7.4E-06 45.3 3.9 45 336-384 13-57 (133)
270 PF05127 Helicase_RecD: Helica 90.0 0.051 1.1E-06 53.3 -1.8 106 349-465 1-123 (177)
271 PRK05973 replicative DNA helic 89.9 0.24 5.2E-06 50.9 3.0 45 335-380 54-98 (237)
272 PRK13764 ATPase; Provisional 89.9 0.31 6.8E-06 56.4 4.2 27 338-364 249-276 (602)
273 KOG0349 Putative DEAD-box RNA 89.9 0.07 1.5E-06 58.2 -1.0 40 327-367 22-61 (725)
274 KOG0331 ATP-dependent RNA heli 89.9 1.3 2.8E-05 50.3 8.9 73 519-600 165-244 (519)
275 COG1126 GlnQ ABC-type polar am 89.9 0.16 3.5E-06 51.2 1.7 23 341-363 24-46 (240)
276 COG5008 PilU Tfp pilus assembl 89.8 0.26 5.5E-06 51.2 3.0 35 341-375 123-157 (375)
277 COG1136 SalX ABC-type antimicr 89.6 0.18 3.9E-06 51.4 1.7 25 341-365 27-51 (226)
278 PF07517 SecA_DEAD: SecA DEAD- 89.5 0.41 9E-06 50.0 4.4 96 330-432 77-179 (266)
279 TIGR02533 type_II_gspE general 89.4 0.55 1.2E-05 53.3 5.7 39 329-367 224-264 (486)
280 PF06745 KaiC: KaiC; InterPro 89.4 0.31 6.6E-06 49.1 3.3 37 344-380 18-54 (226)
281 PF13173 AAA_14: AAA domain 89.3 0.33 7.1E-06 44.5 3.1 26 344-369 1-26 (128)
282 cd01126 TraG_VirD4 The TraG/Tr 89.2 0.23 5E-06 54.4 2.3 50 348-401 2-51 (384)
283 KOG2373 Predicted mitochondria 89.1 0.22 4.7E-06 53.3 2.0 35 335-369 263-297 (514)
284 PF02534 T4SS-DNA_transf: Type 89.1 0.26 5.7E-06 55.2 2.8 51 346-400 45-95 (469)
285 TIGR03878 thermo_KaiC_2 KaiC d 89.0 0.32 7E-06 50.5 3.2 37 343-380 34-70 (259)
286 PRK08181 transposase; Validate 89.0 0.58 1.3E-05 49.0 5.1 40 341-381 102-141 (269)
287 PF13238 AAA_18: AAA domain; P 88.9 0.21 4.6E-06 44.7 1.6 14 348-361 1-14 (129)
288 TIGR03263 guanyl_kin guanylate 88.9 0.3 6.5E-06 47.1 2.7 21 345-365 1-21 (180)
289 PF12775 AAA_7: P-loop contain 88.9 0.47 1E-05 49.7 4.4 28 340-367 28-55 (272)
290 PRK11634 ATP-dependent RNA hel 88.9 1.5 3.3E-05 51.3 9.0 75 518-600 74-154 (629)
291 PF01580 FtsK_SpoIIIE: FtsK/Sp 88.9 0.36 7.8E-06 47.8 3.3 39 345-383 38-79 (205)
292 PRK09183 transposase/IS protei 88.8 0.5 1.1E-05 49.1 4.4 40 341-381 98-137 (259)
293 cd01122 GP4d_helicase GP4d_hel 88.7 0.36 7.7E-06 49.9 3.3 43 338-380 23-65 (271)
294 PF01935 DUF87: Domain of unkn 88.6 0.42 9.2E-06 48.1 3.7 38 347-384 25-62 (229)
295 cd01394 radB RadB. The archaea 88.5 0.4 8.8E-06 47.9 3.4 37 343-380 17-53 (218)
296 COG3839 MalK ABC-type sugar tr 88.3 0.23 5.1E-06 53.5 1.7 24 342-365 26-49 (338)
297 TIGR02784 addA_alphas double-s 88.2 0.59 1.3E-05 58.5 5.3 59 341-399 6-66 (1141)
298 PRK11776 ATP-dependent RNA hel 88.2 2 4.2E-05 48.2 9.0 74 519-600 73-152 (460)
299 PRK00300 gmk guanylate kinase; 88.2 0.37 8E-06 47.5 2.9 22 344-365 4-25 (205)
300 PF00005 ABC_tran: ABC transpo 88.2 0.21 4.5E-06 45.8 1.0 21 343-363 9-29 (137)
301 COG1120 FepC ABC-type cobalami 88.0 0.24 5.3E-06 51.4 1.5 48 342-390 25-78 (258)
302 PRK11192 ATP-dependent RNA hel 87.9 2.8 6E-05 46.5 9.9 59 518-585 73-131 (434)
303 TIGR00631 uvrb excinuclease AB 87.8 1.3 2.8E-05 52.1 7.5 60 338-401 21-81 (655)
304 TIGR02880 cbbX_cfxQ probable R 87.7 0.61 1.3E-05 49.1 4.3 37 345-381 58-97 (284)
305 COG0610 Type I site-specific r 87.7 13 0.00029 45.8 16.3 115 347-465 275-413 (962)
306 PHA02244 ATPase-like protein 87.6 0.59 1.3E-05 51.0 4.2 30 337-366 111-140 (383)
307 PF13191 AAA_16: AAA ATPase do 87.6 0.48 1E-05 45.3 3.2 22 344-365 23-44 (185)
308 TIGR00643 recG ATP-dependent D 87.6 2.7 5.8E-05 49.3 9.9 78 518-600 284-362 (630)
309 PRK10078 ribose 1,5-bisphospho 87.5 0.33 7.3E-06 47.4 2.1 21 345-365 2-22 (186)
310 TIGR02237 recomb_radB DNA repa 87.5 0.48 1E-05 47.0 3.2 26 344-369 11-36 (209)
311 PRK08533 flagellar accessory p 87.5 0.46 9.9E-06 48.4 3.1 38 342-380 21-58 (230)
312 PF00004 AAA: ATPase family as 87.4 0.48 1E-05 42.5 2.9 21 348-368 1-21 (132)
313 PRK14530 adenylate kinase; Pro 87.4 0.48 1E-05 47.5 3.1 25 345-369 3-27 (215)
314 COG1102 Cmk Cytidylate kinase 87.3 0.59 1.3E-05 45.2 3.5 71 347-435 2-72 (179)
315 PRK13897 type IV secretion sys 87.2 0.52 1.1E-05 54.8 3.7 55 344-402 157-211 (606)
316 KOG1970 Checkpoint RAD17-RFC c 87.2 0.43 9.3E-06 54.0 2.9 29 343-371 108-136 (634)
317 TIGR02322 phosphon_PhnN phosph 87.0 0.37 8E-06 46.5 2.0 19 346-364 2-20 (179)
318 cd00268 DEADc DEAD-box helicas 87.0 6.9 0.00015 38.1 11.1 75 517-600 68-148 (203)
319 PHA03311 helicase-primase subu 86.9 0.82 1.8E-05 53.5 5.0 42 345-392 71-112 (828)
320 PRK13850 type IV secretion sys 86.9 0.6 1.3E-05 54.9 4.1 53 344-400 138-190 (670)
321 TIGR02881 spore_V_K stage V sp 86.9 1.1 2.5E-05 46.2 5.7 37 346-382 43-82 (261)
322 TIGR01650 PD_CobS cobaltochela 86.8 0.74 1.6E-05 49.5 4.4 34 337-370 56-89 (327)
323 TIGR02759 TraD_Ftype type IV c 86.8 0.54 1.2E-05 54.3 3.6 39 344-383 175-213 (566)
324 PF00931 NB-ARC: NB-ARC domain 86.7 0.72 1.6E-05 47.7 4.2 66 336-401 6-77 (287)
325 PF00158 Sigma54_activat: Sigm 86.7 1 2.2E-05 43.7 4.9 38 337-375 14-51 (168)
326 cd00820 PEPCK_HprK Phosphoenol 86.6 0.38 8.3E-06 43.3 1.7 24 343-366 13-36 (107)
327 PF07728 AAA_5: AAA domain (dy 86.6 0.52 1.1E-05 43.4 2.7 19 347-365 1-19 (139)
328 PRK06067 flagellar accessory p 86.6 0.63 1.4E-05 47.2 3.5 37 343-380 23-59 (234)
329 COG0467 RAD55 RecA-superfamily 86.5 0.72 1.6E-05 47.6 4.0 49 342-392 20-68 (260)
330 TIGR03819 heli_sec_ATPase heli 86.5 0.82 1.8E-05 49.5 4.6 51 334-386 166-217 (340)
331 PRK08233 hypothetical protein; 86.5 0.48 1E-05 45.4 2.6 21 346-366 4-24 (182)
332 cd03238 ABC_UvrA The excision 86.5 0.46 9.9E-06 46.5 2.4 24 342-365 18-41 (176)
333 PF13481 AAA_25: AAA domain; P 86.4 0.64 1.4E-05 45.2 3.4 27 343-369 30-56 (193)
334 PF10412 TrwB_AAD_bind: Type I 86.4 0.57 1.2E-05 51.5 3.4 44 344-388 14-57 (386)
335 TIGR01360 aden_kin_iso1 adenyl 86.4 0.62 1.3E-05 45.0 3.2 24 345-368 3-26 (188)
336 COG1219 ClpX ATP-dependent pro 86.3 0.35 7.7E-06 51.4 1.6 17 344-360 96-112 (408)
337 PRK14873 primosome assembly pr 86.3 1 2.3E-05 52.9 5.6 63 518-587 188-250 (665)
338 cd00071 GMPK Guanosine monopho 86.3 0.49 1.1E-05 44.2 2.4 18 348-365 2-19 (137)
339 PF04665 Pox_A32: Poxvirus A32 86.3 0.73 1.6E-05 47.5 3.8 35 347-382 15-49 (241)
340 TIGR01359 UMP_CMP_kin_fam UMP- 86.3 0.53 1.2E-05 45.4 2.7 22 347-368 1-22 (183)
341 PRK14701 reverse gyrase; Provi 86.3 1.7 3.6E-05 56.1 7.7 66 518-586 122-187 (1638)
342 PRK13880 conjugal transfer cou 86.2 0.48 1E-05 55.5 2.8 54 345-401 175-228 (636)
343 PRK10689 transcription-repair 86.1 1.2 2.6E-05 55.6 6.2 78 518-600 649-727 (1147)
344 CHL00181 cbbX CbbX; Provisiona 86.1 0.91 2E-05 47.9 4.5 38 345-382 59-99 (287)
345 PRK13822 conjugal transfer cou 85.8 0.73 1.6E-05 54.0 3.9 53 345-401 224-276 (641)
346 PF14532 Sigma54_activ_2: Sigm 85.8 0.52 1.1E-05 43.7 2.3 37 334-371 10-46 (138)
347 PRK12402 replication factor C 85.8 1 2.3E-05 47.7 4.9 32 336-367 25-58 (337)
348 PF09439 SRPRB: Signal recogni 85.7 0.6 1.3E-05 46.0 2.7 24 345-368 3-26 (181)
349 TIGR03238 dnd_assoc_3 dnd syst 85.6 0.77 1.7E-05 51.7 3.8 22 342-363 29-50 (504)
350 TIGR01166 cbiO cobalt transpor 85.5 0.43 9.4E-06 46.6 1.7 22 342-363 15-36 (190)
351 COG4525 TauB ABC-type taurine 85.4 0.46 1E-05 47.4 1.8 24 341-364 27-50 (259)
352 PF03215 Rad17: Rad17 cell cyc 85.3 0.96 2.1E-05 51.7 4.5 26 345-370 45-70 (519)
353 cd00544 CobU Adenosylcobinamid 85.0 0.87 1.9E-05 44.3 3.5 45 348-396 2-46 (169)
354 PRK14729 miaA tRNA delta(2)-is 85.0 0.65 1.4E-05 49.4 2.8 21 344-364 3-23 (300)
355 KOG0780 Signal recognition par 85.0 1.2 2.7E-05 48.4 4.8 123 344-474 100-236 (483)
356 TIGR03881 KaiC_arch_4 KaiC dom 84.9 0.77 1.7E-05 46.2 3.2 38 342-380 17-54 (229)
357 TIGR01054 rgy reverse gyrase. 84.9 2.1 4.5E-05 53.7 7.5 67 518-586 121-187 (1171)
358 PLN02165 adenylate isopentenyl 84.9 0.67 1.5E-05 49.9 2.9 23 343-365 41-63 (334)
359 cd01123 Rad51_DMC1_radA Rad51_ 84.8 0.8 1.7E-05 46.1 3.3 27 342-368 16-42 (235)
360 cd03292 ABC_FtsE_transporter F 84.8 0.48 1E-05 47.1 1.6 23 342-364 24-46 (214)
361 PRK09361 radB DNA repair and r 84.8 0.79 1.7E-05 46.0 3.2 36 343-379 21-56 (225)
362 cd03255 ABC_MJ0796_Lo1CDE_FtsE 84.8 0.47 1E-05 47.3 1.6 23 342-364 27-49 (218)
363 PF02492 cobW: CobW/HypB/UreG, 84.8 0.82 1.8E-05 44.5 3.2 21 347-367 2-22 (178)
364 COG1702 PhoH Phosphate starvat 84.7 1 2.2E-05 48.3 4.1 54 328-382 126-181 (348)
365 cd03258 ABC_MetN_methionine_tr 84.7 0.49 1.1E-05 47.8 1.7 22 342-363 28-49 (233)
366 cd03226 ABC_cobalt_CbiO_domain 84.6 0.49 1.1E-05 46.8 1.6 23 342-364 23-45 (205)
367 TIGR02673 FtsE cell division A 84.6 0.51 1.1E-05 47.0 1.7 23 342-364 25-47 (214)
368 PF01078 Mg_chelatase: Magnesi 84.6 0.92 2E-05 45.6 3.5 26 336-361 13-38 (206)
369 PRK14531 adenylate kinase; Pro 84.5 0.83 1.8E-05 44.5 3.2 23 347-369 4-26 (183)
370 PRK04328 hypothetical protein; 84.5 0.87 1.9E-05 46.9 3.5 36 344-380 22-57 (249)
371 TIGR03880 KaiC_arch_3 KaiC dom 84.5 0.86 1.9E-05 45.8 3.3 48 344-393 15-62 (224)
372 COG1125 OpuBA ABC-type proline 84.5 0.5 1.1E-05 48.9 1.6 24 342-365 24-47 (309)
373 PRK11331 5-methylcytosine-spec 84.4 1.4 3E-05 49.4 5.1 32 334-365 183-214 (459)
374 TIGR03743 SXT_TraD conjugative 84.4 1.2 2.7E-05 52.1 5.0 54 345-400 176-231 (634)
375 TIGR02012 tigrfam_recA protein 84.4 1.1 2.5E-05 48.0 4.3 40 341-381 51-90 (321)
376 PRK15177 Vi polysaccharide exp 84.4 0.51 1.1E-05 47.3 1.6 23 342-364 10-32 (213)
377 PRK07261 topology modulation p 84.3 0.76 1.7E-05 44.5 2.8 18 348-365 3-20 (171)
378 PRK06921 hypothetical protein; 84.3 1.4 3E-05 46.0 4.9 38 344-382 116-154 (266)
379 cd03259 ABC_Carb_Solutes_like 84.3 0.52 1.1E-05 46.9 1.6 23 342-364 23-45 (213)
380 PRK14527 adenylate kinase; Pro 84.3 0.88 1.9E-05 44.6 3.2 25 344-368 5-29 (191)
381 cd02020 CMPK Cytidine monophos 84.3 0.8 1.7E-05 42.1 2.8 21 347-367 1-21 (147)
382 TIGR03608 L_ocin_972_ABC putat 84.2 0.51 1.1E-05 46.6 1.5 23 342-364 21-43 (206)
383 cd03269 ABC_putative_ATPase Th 84.2 0.53 1.2E-05 46.7 1.7 24 342-365 23-46 (210)
384 cd03225 ABC_cobalt_CbiO_domain 84.1 0.51 1.1E-05 46.8 1.5 22 342-363 24-45 (211)
385 TIGR02655 circ_KaiC circadian 84.1 0.85 1.8E-05 51.7 3.4 56 342-400 260-315 (484)
386 COG1122 CbiO ABC-type cobalt t 84.1 0.52 1.1E-05 48.4 1.6 23 342-364 27-49 (235)
387 PRK11823 DNA repair protein Ra 84.1 1.2 2.6E-05 50.0 4.6 56 342-400 77-132 (446)
388 cd03235 ABC_Metallic_Cations A 84.1 0.54 1.2E-05 46.8 1.7 23 342-364 22-44 (213)
389 TIGR02315 ABC_phnC phosphonate 84.0 0.54 1.2E-05 47.7 1.7 22 342-363 25-46 (243)
390 TIGR02655 circ_KaiC circadian 84.0 0.89 1.9E-05 51.6 3.5 26 344-369 20-45 (484)
391 PRK06835 DNA replication prote 84.0 1.3 2.7E-05 47.9 4.5 38 344-382 182-219 (329)
392 TIGR00235 udk uridine kinase. 84.0 0.67 1.5E-05 46.1 2.3 18 345-362 6-23 (207)
393 PLN02840 tRNA dimethylallyltra 83.8 0.46 1E-05 52.7 1.1 23 345-367 21-43 (421)
394 PRK13541 cytochrome c biogenes 83.8 0.56 1.2E-05 46.1 1.6 23 342-364 23-45 (195)
395 PRK05541 adenylylsulfate kinas 83.8 0.84 1.8E-05 44.0 2.8 23 343-365 5-27 (176)
396 TIGR03420 DnaA_homol_Hda DnaA 83.8 1.2 2.5E-05 44.5 3.9 26 343-368 36-61 (226)
397 cd03224 ABC_TM1139_LivF_branch 83.7 0.54 1.2E-05 47.0 1.5 22 342-363 23-44 (222)
398 PRK01184 hypothetical protein; 83.7 0.86 1.9E-05 44.2 2.8 21 347-368 3-23 (184)
399 PF06414 Zeta_toxin: Zeta toxi 83.6 1.1 2.3E-05 44.5 3.5 27 343-369 13-39 (199)
400 COG1116 TauB ABC-type nitrate/ 83.5 0.59 1.3E-05 48.1 1.6 24 341-364 25-48 (248)
401 cd03293 ABC_NrtD_SsuB_transpor 83.4 0.54 1.2E-05 47.1 1.3 23 342-364 27-49 (220)
402 cd03229 ABC_Class3 This class 83.3 0.6 1.3E-05 45.2 1.6 23 342-364 23-45 (178)
403 TIGR00960 3a0501s02 Type II (G 83.3 0.6 1.3E-05 46.5 1.6 23 342-364 26-48 (216)
404 cd00227 CPT Chloramphenicol (C 83.2 0.74 1.6E-05 44.5 2.2 21 345-365 2-22 (175)
405 cd03261 ABC_Org_Solvent_Resist 83.2 0.6 1.3E-05 47.2 1.6 24 342-365 23-46 (235)
406 TIGR02858 spore_III_AA stage I 83.1 1.9 4.1E-05 45.2 5.3 21 346-366 112-132 (270)
407 cd03222 ABC_RNaseL_inhibitor T 83.1 0.6 1.3E-05 45.7 1.5 24 341-364 21-44 (177)
408 cd03219 ABC_Mj1267_LivG_branch 83.1 0.63 1.4E-05 47.0 1.7 23 342-364 23-45 (236)
409 cd03301 ABC_MalK_N The N-termi 83.0 0.62 1.3E-05 46.3 1.6 22 342-363 23-44 (213)
410 cd03247 ABCC_cytochrome_bd The 83.0 0.63 1.4E-05 45.0 1.6 23 342-364 25-47 (178)
411 COG0563 Adk Adenylate kinase a 83.0 0.94 2E-05 44.4 2.8 22 347-368 2-23 (178)
412 cd03256 ABC_PhnC_transporter A 83.0 0.63 1.4E-05 47.1 1.7 24 342-365 24-47 (241)
413 PRK10247 putative ABC transpor 83.0 0.64 1.4E-05 46.8 1.7 23 342-364 30-52 (225)
414 COG1484 DnaC DNA replication p 83.0 2.2 4.8E-05 44.2 5.7 51 339-391 99-149 (254)
415 cd03265 ABC_DrrA DrrA is the A 82.9 0.64 1.4E-05 46.5 1.6 23 342-364 23-45 (220)
416 cd03268 ABC_BcrA_bacitracin_re 82.9 0.63 1.4E-05 46.1 1.5 23 342-364 23-45 (208)
417 cd03221 ABCF_EF-3 ABCF_EF-3 E 82.9 0.65 1.4E-05 43.6 1.6 22 342-363 23-44 (144)
418 TIGR02236 recomb_radA DNA repa 82.9 1.1 2.4E-05 47.5 3.5 27 343-369 93-119 (310)
419 COG0210 UvrD Superfamily I DNA 82.9 1.9 4.1E-05 50.6 5.8 66 333-400 5-73 (655)
420 PRK10590 ATP-dependent RNA hel 82.8 10 0.00022 42.5 11.4 72 520-600 77-154 (456)
421 PRK10646 ADP-binding protein; 82.8 1.4 3.1E-05 42.2 3.9 46 337-386 20-65 (153)
422 TIGR03864 PQQ_ABC_ATP ABC tran 82.8 0.64 1.4E-05 47.1 1.6 23 342-364 24-46 (236)
423 cd03246 ABCC_Protease_Secretio 82.8 0.65 1.4E-05 44.8 1.6 23 342-364 25-47 (173)
424 cd02019 NK Nucleoside/nucleoti 82.7 1.1 2.4E-05 36.6 2.7 19 347-365 1-19 (69)
425 cd03257 ABC_NikE_OppD_transpor 82.7 0.67 1.4E-05 46.5 1.7 22 342-363 28-49 (228)
426 PRK10584 putative ABC transpor 82.7 0.65 1.4E-05 46.7 1.6 23 342-364 33-55 (228)
427 TIGR02211 LolD_lipo_ex lipopro 82.7 0.64 1.4E-05 46.4 1.6 23 342-364 28-50 (221)
428 PRK08084 DNA replication initi 82.7 1.3 2.9E-05 45.1 3.9 37 345-382 45-81 (235)
429 PRK14242 phosphate transporter 82.6 0.64 1.4E-05 47.6 1.6 24 342-365 29-52 (253)
430 PRK08118 topology modulation p 82.6 1 2.2E-05 43.6 2.8 18 347-364 3-20 (167)
431 TIGR02767 TraG-Ti Ti-type conj 82.6 1.3 2.9E-05 51.7 4.3 51 345-399 211-261 (623)
432 cd03230 ABC_DR_subfamily_A Thi 82.6 0.69 1.5E-05 44.6 1.7 22 342-363 23-44 (173)
433 PF00625 Guanylate_kin: Guanyl 82.6 4.3 9.4E-05 39.4 7.3 23 345-367 2-24 (183)
434 PF03796 DnaB_C: DnaB-like hel 82.6 1.6 3.5E-05 44.9 4.5 42 339-380 13-54 (259)
435 cd03279 ABC_sbcCD SbcCD and ot 82.6 0.79 1.7E-05 45.9 2.1 20 344-363 27-46 (213)
436 PRK04837 ATP-dependent RNA hel 82.5 12 0.00026 41.4 11.6 73 519-600 84-162 (423)
437 PRK13539 cytochrome c biogenes 82.5 0.67 1.4E-05 46.1 1.6 23 342-364 25-47 (207)
438 cd03262 ABC_HisP_GlnQ_permease 82.5 0.68 1.5E-05 45.9 1.6 22 342-363 23-44 (213)
439 PRK10908 cell division protein 82.5 0.68 1.5E-05 46.4 1.7 24 342-365 25-48 (222)
440 PRK09354 recA recombinase A; P 82.5 1.9 4.2E-05 46.8 5.1 38 342-380 57-94 (349)
441 TIGR01978 sufC FeS assembly AT 82.4 0.68 1.5E-05 46.9 1.7 23 342-364 23-45 (243)
442 cd02023 UMPK Uridine monophosp 82.4 0.7 1.5E-05 45.4 1.7 16 347-362 1-16 (198)
443 cd03298 ABC_ThiQ_thiamine_tran 82.4 0.68 1.5E-05 46.0 1.6 23 342-364 21-43 (211)
444 PRK08903 DnaA regulatory inact 82.3 1.5 3.3E-05 44.0 4.1 38 344-382 41-78 (227)
445 PRK14247 phosphate ABC transpo 82.3 0.68 1.5E-05 47.3 1.6 23 342-364 26-48 (250)
446 cd03218 ABC_YhbG The ABC trans 82.3 0.71 1.5E-05 46.5 1.7 23 342-364 23-45 (232)
447 cd01393 recA_like RecA is a b 82.2 1.3 2.7E-05 44.4 3.5 28 342-369 16-43 (226)
448 cd03260 ABC_PstB_phosphate_tra 82.2 0.7 1.5E-05 46.5 1.6 23 342-364 23-45 (227)
449 PRK14532 adenylate kinase; Pro 82.1 1.1 2.4E-05 43.6 2.9 23 347-369 2-24 (188)
450 cd03228 ABCC_MRP_Like The MRP 82.1 0.72 1.6E-05 44.4 1.6 23 342-364 25-47 (171)
451 PRK05480 uridine/cytidine kina 82.0 0.79 1.7E-05 45.5 1.9 19 345-363 6-24 (209)
452 cd03296 ABC_CysA_sulfate_impor 82.0 0.72 1.6E-05 46.8 1.6 23 342-364 25-47 (239)
453 cd03237 ABC_RNaseL_inhibitor_d 82.0 0.75 1.6E-05 47.3 1.8 23 342-364 22-44 (246)
454 PRK06762 hypothetical protein; 82.0 0.81 1.7E-05 43.6 1.9 20 346-365 3-22 (166)
455 PRK08356 hypothetical protein; 82.0 0.79 1.7E-05 45.2 1.9 19 347-365 7-25 (195)
456 PHA03333 putative ATPase subun 82.0 19 0.0004 42.6 13.0 62 336-398 179-240 (752)
457 cd03266 ABC_NatA_sodium_export 81.9 0.74 1.6E-05 45.9 1.7 23 342-364 28-50 (218)
458 TIGR02324 CP_lyasePhnL phospho 81.9 0.72 1.6E-05 46.3 1.6 23 342-364 31-53 (224)
459 cd03245 ABCC_bacteriocin_expor 81.9 0.72 1.6E-05 46.0 1.6 23 342-364 27-49 (220)
460 PHA02533 17 large terminase pr 81.9 4 8.7E-05 46.9 7.8 70 327-396 56-126 (534)
461 TIGR01313 therm_gnt_kin carboh 81.9 0.66 1.4E-05 44.0 1.2 17 348-364 1-17 (163)
462 PRK13543 cytochrome c biogenes 81.8 0.72 1.6E-05 46.1 1.5 23 342-364 34-56 (214)
463 cd00267 ABC_ATPase ABC (ATP-bi 81.8 0.76 1.6E-05 43.4 1.6 22 342-363 22-43 (157)
464 cd03223 ABCD_peroxisomal_ALDP 81.8 0.77 1.7E-05 44.1 1.6 23 342-364 24-46 (166)
465 cd03214 ABC_Iron-Siderophores_ 81.8 0.74 1.6E-05 44.7 1.6 23 342-364 22-44 (180)
466 PRK11629 lolD lipoprotein tran 81.7 0.74 1.6E-05 46.5 1.6 23 342-364 32-54 (233)
467 cd03263 ABC_subfamily_A The AB 81.7 0.76 1.6E-05 45.9 1.6 22 342-363 25-46 (220)
468 smart00072 GuKc Guanylate kina 81.7 1.2 2.6E-05 43.5 3.0 24 345-368 2-25 (184)
469 PRK13540 cytochrome c biogenes 81.6 0.75 1.6E-05 45.4 1.6 23 342-364 24-46 (200)
470 cd00983 recA RecA is a bacter 81.6 1.7 3.7E-05 46.8 4.3 40 342-382 52-91 (325)
471 TIGR01189 ccmA heme ABC export 81.5 0.75 1.6E-05 45.3 1.5 23 342-364 23-45 (198)
472 cd01363 Motor_domain Myosin an 81.5 1.2 2.6E-05 43.7 3.0 33 330-362 7-41 (186)
473 KOG0392 SNF2 family DNA-depend 81.5 4 8.7E-05 50.3 7.6 77 519-601 1341-1419(1549)
474 PRK12900 secA preprotein trans 81.5 1.6 3.4E-05 53.1 4.3 89 338-430 144-238 (1025)
475 PRK13700 conjugal transfer pro 81.5 1.2 2.6E-05 52.4 3.4 42 344-386 184-225 (732)
476 PRK11124 artP arginine transpo 81.5 0.78 1.7E-05 46.6 1.7 23 342-364 25-47 (242)
477 PRK14262 phosphate ABC transpo 81.4 0.82 1.8E-05 46.7 1.8 23 342-364 26-48 (250)
478 PRK04537 ATP-dependent RNA hel 81.4 8.8 0.00019 44.5 10.4 58 519-585 85-142 (572)
479 PRK11248 tauB taurine transpor 81.4 0.76 1.7E-05 47.4 1.6 24 342-365 24-47 (255)
480 PRK13538 cytochrome c biogenes 81.4 0.77 1.7E-05 45.5 1.5 23 342-364 24-46 (204)
481 PRK00091 miaA tRNA delta(2)-is 81.3 1.1 2.4E-05 47.8 2.8 21 346-366 5-25 (307)
482 TIGR03410 urea_trans_UrtE urea 81.3 0.79 1.7E-05 46.1 1.6 22 342-363 23-44 (230)
483 TIGR02323 CP_lyasePhnK phospho 81.3 0.78 1.7E-05 47.0 1.6 22 342-363 26-47 (253)
484 TIGR01184 ntrCD nitrate transp 81.2 0.82 1.8E-05 46.3 1.7 23 342-364 8-30 (230)
485 KOG0338 ATP-dependent RNA heli 81.2 5.1 0.00011 45.2 7.8 59 518-585 252-310 (691)
486 COG0466 Lon ATP-dependent Lon 81.2 22 0.00047 42.1 13.1 32 328-359 325-364 (782)
487 PRK08727 hypothetical protein; 81.1 1.8 3.9E-05 44.1 4.2 36 346-382 42-77 (233)
488 PRK10744 pstB phosphate transp 81.1 0.82 1.8E-05 47.1 1.7 24 342-365 36-59 (260)
489 TIGR02770 nickel_nikD nickel i 81.1 0.82 1.8E-05 46.2 1.7 23 342-364 9-31 (230)
490 COG0802 Predicted ATPase or ki 81.1 1.8 4E-05 41.2 3.9 48 335-386 15-62 (149)
491 COG1875 NYN ribonuclease and A 81.1 2.2 4.7E-05 46.4 4.8 61 323-383 221-285 (436)
492 cd03232 ABC_PDR_domain2 The pl 81.0 0.76 1.6E-05 45.2 1.3 23 342-364 30-52 (192)
493 TIGR00972 3a0107s01c2 phosphat 80.9 0.83 1.8E-05 46.6 1.6 23 342-364 24-46 (247)
494 cd03216 ABC_Carb_Monos_I This 80.9 0.84 1.8E-05 43.7 1.6 24 342-365 23-46 (163)
495 PF13476 AAA_23: AAA domain; P 80.9 1.1 2.3E-05 43.3 2.4 19 344-362 18-36 (202)
496 TIGR03600 phage_DnaB phage rep 80.8 2 4.3E-05 47.7 4.7 58 336-394 185-242 (421)
497 TIGR00416 sms DNA repair prote 80.8 1.3 2.8E-05 49.8 3.3 40 341-381 90-129 (454)
498 cd01428 ADK Adenylate kinase ( 80.7 1.2 2.7E-05 43.1 2.7 20 348-367 2-21 (194)
499 cd03215 ABC_Carb_Monos_II This 80.7 0.86 1.9E-05 44.3 1.6 22 342-363 23-44 (182)
500 PRK14528 adenylate kinase; Pro 80.7 1.4 3.1E-05 43.2 3.1 20 347-366 3-22 (186)
No 1
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-125 Score=1022.28 Aligned_cols=484 Identities=63% Similarity=0.965 Sum_probs=458.4
Q ss_pred HHHHhhchHhHHHHHHHHHHhhHHhhcccCCCCCCchhHHHHHHhhcccc--ChhHHHHHHHhhhhhHHHHHHHHHHHhh
Q 035699 145 EEERLRDQRGKEELERRIRERDVAATRKLTGPKLTWKEEYDAIQRSRKDD--GIENLREVSRQKYLPKRAQKKLEEIKDR 222 (633)
Q Consensus 145 e~~r~~d~~er~~~~~rl~~~d~~~t~~~~~~~~~~~~~~~~~~r~~~~~--~~~~lr~~sr~~yl~kr~~~kl~~l~~~ 222 (633)
|.+|..|++||++|++||++||+++|||++|+ |+.++++.+|+ +++ ++..||+.|||+||+||+++|+++|+++
T Consensus 39 e~~~~~d~~eR~e~e~~l~~kdk~rtr~~~e~---k~~~ee~~~r~-~~~~ed~~~lR~~Sr~eyl~~r~~~k~e~L~~~ 114 (902)
T KOG0923|consen 39 EEERQNDLKERDELEERLEKKDKDRTRNVVER---KKSYEEAAKRK-ALEPEDRTKLRKKSRREYLKKREQKKLEELEAE 114 (902)
T ss_pred HHHHhhhHHHHHHHHHHHHHhhHHhhhhcccc---hhhHHHHHHhh-ccCcchhhHHhhhhhhhhhhhHHHHHHHHHHhh
Confidence 67888899999999999999999999999996 56788888886 444 6889999999999999999999999999
Q ss_pred HhHHhhhhcCCcCcHHHHhhHHHHHHHHHHHhhhh-----------------------hccC---------CC-----cc
Q 035699 223 TKDKENLFEGQKLTGAELCELDYEKKILDLVGQEG-----------------------LQRC---------SH-----ES 265 (633)
Q Consensus 223 i~~~e~~~~~~~lt~~e~~~~~~~~~~~~~~~~~~-----------------------~~~~---------~~-----~~ 265 (633)
|.|+++||++++||++|++|++|||++|.+...+. .+|| +| .|
T Consensus 115 i~D~~~lf~~eklt~~e~~ele~kkell~~~~~~~~~~~~~~e~~~~y~~~~~~d~~~~~ry~d~~~~e~~~p~~eq~~W 194 (902)
T KOG0923|consen 115 IEDEEYLFGDEKLTKREIRELEYKKELLDRGTKETESASEVEEYRSRYDQPGELDKVEPQRYVDLDEEEKVNPGAEQRAW 194 (902)
T ss_pred hcchhhhcccchhhhhhHhhhhhHHhhhhhhhhhhhcccchHHHHhhhcccccchhhhhHHHhcccchhccChHHHHHHH
Confidence 99999999999999999999999999999765432 2344 11 25
Q ss_pred HHHHHHhhhhccCCcccccccccccchhcccccccceeecccCCCCh-------hHHHHHHHHHHHHHccCCChHHHHHH
Q 035699 266 DKQQRKKADLKYGSKNKKQQYDDYQYVFEIEDKIVDFFRESVELPDK-------SAVKSALEMLQEERKTLPIYPFREEL 338 (633)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-------~~~~~~~~~l~~~r~~LPi~~~q~~i 338 (633)
|++|+++|.++||+++..+.+++|+||||+. ++|+|+.++.+.++. .....+..+|++.|++||+|+|++++
T Consensus 195 Ed~ql~~a~~~~ga~~~~~~~~~ye~vfdd~-~~idF~~e~~~~~~~e~~~~~~~~~~~~~~~iee~RksLPVy~ykdel 273 (902)
T KOG0923|consen 195 EDHQLGNAMLKFGAKDAKEGSDGYEFVFDDQ-IVIDFIQESKLAGSNEEDAKDAPTAYERRESIEEVRKSLPVYPYKDEL 273 (902)
T ss_pred HHHHhhhhHhhcCCCcCcccccCceeeccch-hhhhHHHhhhccccCccccchhhHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 9999999999999999988899999999996 679999998887764 22223688999999999999999999
Q ss_pred HHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCC-eeeecchhHHHHHHHHHHHHHHhCCcccceEeeeeecccccC
Q 035699 339 LQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQG-KIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTS 417 (633)
Q Consensus 339 l~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~g-kilitqPrR~aA~qva~rva~e~g~~vg~~VGy~ir~e~~~s 417 (633)
+.++..||++||+|+||||||||+||||+++||+++| +|+||||||++||+||.|||++||+++|++|||+|+|++|++
T Consensus 274 l~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGYsIRFEdcTS 353 (902)
T KOG0923|consen 274 LKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVGYSIRFEDCTS 353 (902)
T ss_pred HHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccccccceEEEeccccC
Confidence 9999999999999999999999999999999999999 599999999999999999999999999999999999999999
Q ss_pred CCCcEEEeCchHHHHHHhcCCCCCCceeee-------------------eecccCCCccEEEeecccCHHhHhhhhCCCC
Q 035699 418 DKTVLKYMTDGMLLREIVLEPSLESYSVLI-------------------DLINYRPDLKLLISSATLDAENFSDYFGSAP 478 (633)
Q Consensus 418 ~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-------------------di~~~rpdlklil~SAT~~~~~~s~~f~~~p 478 (633)
++|.|.|||+||||++|+++|+|++||+|| ||+++||++|+|++|||+|+++|+.||+++|
T Consensus 354 ekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKllIsSAT~DAekFS~fFDdap 433 (902)
T KOG0923|consen 354 EKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLLISSATMDAEKFSAFFDDAP 433 (902)
T ss_pred cceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEEeeccccCHHHHHHhccCCc
Confidence 999999999999999999999999999999 7889999999999999999999999999999
Q ss_pred EEEeCCeeeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEecc
Q 035699 479 IFKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIY 558 (633)
Q Consensus 479 ii~i~gr~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lH 558 (633)
||.+|||+|||+++|++.|++||+++++.++++||.+++.|+||||++|+++|+.+.+.|+++++.||+++.++.|||||
T Consensus 434 IF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiY 513 (902)
T KOG0923|consen 434 IFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIY 513 (902)
T ss_pred EEeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccccccCCCCceeeeeeeccHHHHhhcC
Q 035699 559 GNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQRT 633 (633)
Q Consensus 559 g~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~~yd~~~g~~~l~~~~iSka~a~QR~ 633 (633)
+|||++.|++||+++|+|.||||+||||||+|||||||.||||+||+|+++|||+|||++|.++|||||+|+|||
T Consensus 514 aNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRa 588 (902)
T KOG0923|consen 514 ANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRA 588 (902)
T ss_pred ccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999996
No 2
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-79 Score=669.23 Aligned_cols=315 Identities=61% Similarity=1.018 Sum_probs=305.1
Q ss_pred HHHHHHHHHccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHH
Q 035699 318 ALEMLQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQE 397 (633)
Q Consensus 318 ~~~~l~~~r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e 397 (633)
....++++|..|||+.++.+|+.++.+|+++||+|+||||||||+||||+++|+...|+|+||||||+||+++|+|||++
T Consensus 39 ~~~~i~~qR~~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE 118 (674)
T KOG0922|consen 39 TNLSIQEQRESLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEE 118 (674)
T ss_pred cccCHHHhhccCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHH
Confidence 55678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCcccceEeeeeecccccCCCCcEEEeCchHHHHHHhcCCCCCCceeee-------------------eecccCCCccE
Q 035699 398 MGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREIVLEPSLESYSVLI-------------------DLINYRPDLKL 458 (633)
Q Consensus 398 ~g~~vg~~VGy~ir~e~~~s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-------------------di~~~rpdlkl 458 (633)
+|+.+|..|||+|||+++++..|.|+|||+|+|||+++.+|.|+.|++|| .++..|+++|+
T Consensus 119 ~~~~lG~~VGY~IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~Lkl 198 (674)
T KOG0922|consen 119 MGCQLGEEVGYTIRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKL 198 (674)
T ss_pred hCCCcCceeeeEEEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceE
Confidence 99999999999999999999999999999999999999999999999999 34567799999
Q ss_pred EEeecccCHHhHhhhhCCCCEEEeCCeeeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHH
Q 035699 459 LISSATLDAENFSDYFGSAPIFKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEIL 538 (633)
Q Consensus 459 il~SAT~~~~~~s~~f~~~pii~i~gr~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L 538 (633)
|+||||+|+++|+.||.+||++.||||.|||+++|++.|..+|+++++.++++||.+.++|+|||||+|+++|+++++.|
T Consensus 199 IimSATlda~kfS~yF~~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l 278 (674)
T KOG0922|consen 199 IIMSATLDAEKFSEYFNNAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELL 278 (674)
T ss_pred EEEeeeecHHHHHHHhcCCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccccccCCCCcee
Q 035699 539 KQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVKSYNPKTGMES 618 (633)
Q Consensus 539 ~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~~yd~~~g~~~ 618 (633)
.+....++...+. .++|+||.||.++|.++|.+.|+|.|||||||||||+|||||||.||||+|++|+..|||++||++
T Consensus 279 ~e~~~~~~~~~~~-~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~ 357 (674)
T KOG0922|consen 279 RERAKSLPEDCPE-LILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDS 357 (674)
T ss_pred HHHhhhccccCcc-eeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccc
Confidence 9987777766666 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeccHHHHhhcC
Q 035699 619 LLVNPISKASANQRT 633 (633)
Q Consensus 619 l~~~~iSka~a~QR~ 633 (633)
|.++|||||+|+||+
T Consensus 358 L~v~~ISkasA~QRa 372 (674)
T KOG0922|consen 358 LIVVPISKASANQRA 372 (674)
T ss_pred eeEEechHHHHhhhc
Confidence 999999999999996
No 3
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-74 Score=623.12 Aligned_cols=315 Identities=56% Similarity=0.945 Sum_probs=301.9
Q ss_pred HHHHHHHHccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHh
Q 035699 319 LEMLQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEM 398 (633)
Q Consensus 319 ~~~l~~~r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~ 398 (633)
.+.+.++|+.||++.+|++++..|..|++|||+|+||||||||+||||++.||..+|-|+||||||+||++||.||+.+|
T Consensus 345 ~k~i~eqrq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM 424 (1042)
T KOG0924|consen 345 KKSIREQRQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEM 424 (1042)
T ss_pred cchHHHHHhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHh
Confidence 35589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccceEeeeeecccccCCCCcEEEeCchHHHHHHhcCCCCCCceeee-e------------------ecccCCCccEE
Q 035699 399 GVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREIVLEPSLESYSVLI-D------------------LINYRPDLKLL 459 (633)
Q Consensus 399 g~~vg~~VGy~ir~e~~~s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-d------------------i~~~rpdlkli 459 (633)
|+.+|..|||+|||++++++.|.|.|||+|.||++.+.+.+|..|++|| | ++..|.|+|+|
T Consensus 425 ~~~lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKli 504 (1042)
T KOG0924|consen 425 GVTLGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLI 504 (1042)
T ss_pred CCccccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEE
Confidence 9999999999999999999999999999999999999999999999999 2 23456789999
Q ss_pred EeecccCHHhHhhhhCCCCEEEeCCeeeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHH
Q 035699 460 ISSATLDAENFSDYFGSAPIFKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILK 539 (633)
Q Consensus 460 l~SAT~~~~~~s~~f~~~pii~i~gr~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~ 539 (633)
++|||||+++|+.||++||.|+||||+|||++.|+..|-.+|+++++...++||.+.++|+||||++|+++|+..+..+.
T Consensus 505 VtSATm~a~kf~nfFgn~p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~ 584 (1042)
T KOG0924|consen 505 VTSATMDAQKFSNFFGNCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIK 584 (1042)
T ss_pred EeeccccHHHHHHHhCCCceeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccCC-CCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccccccCCCCcee
Q 035699 540 QRTRGLGT-KIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVKSYNPKTGMES 618 (633)
Q Consensus 540 ~~~~~l~~-~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~~yd~~~g~~~ 618 (633)
..+..+.. +..++.|+|||+.||++.|++||++.+.|.|||||||||||+|||||||.||||||++|.++|||++||++
T Consensus 585 ~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~ 664 (1042)
T KOG0924|consen 585 EKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDA 664 (1042)
T ss_pred HHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccce
Confidence 87766543 23589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeccHHHHhhcC
Q 035699 619 LLVNPISKASANQRT 633 (633)
Q Consensus 619 l~~~~iSka~a~QR~ 633 (633)
|+++|||||+|+||+
T Consensus 665 L~~~pIS~AnA~QRa 679 (1042)
T KOG0924|consen 665 LQIVPISQANADQRA 679 (1042)
T ss_pred eEEEechhccchhhc
Confidence 999999999999996
No 4
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=6.4e-69 Score=617.25 Aligned_cols=311 Identities=57% Similarity=0.877 Sum_probs=295.7
Q ss_pred HHHHHHHHHccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHH
Q 035699 318 ALEMLQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQE 397 (633)
Q Consensus 318 ~~~~l~~~r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e 397 (633)
....+.+.+..||++.++.+|+.++..|++|||+|+||||||||+|++|++.++..+|+|+||||||++|+++|+|||++
T Consensus 38 ~~~~~~~~~~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAee 117 (845)
T COG1643 38 NVPDILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEE 117 (845)
T ss_pred ccchhhhccccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHH
Confidence 44567788999999999999999999999999999999999999999999999977779999999999999999999999
Q ss_pred hCCcccceEeeeeecccccCCCCcEEEeCchHHHHHHhcCCCCCCceeee-------------------eecccC-CCcc
Q 035699 398 MGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREIVLEPSLESYSVLI-------------------DLINYR-PDLK 457 (633)
Q Consensus 398 ~g~~vg~~VGy~ir~e~~~s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-------------------di~~~r-pdlk 457 (633)
||+++|..|||.|||+++++.+|.|+|||+|+|+++++.+|.|+.|++|| +++..+ +|+|
T Consensus 118 l~~~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLK 197 (845)
T COG1643 118 LGEKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLK 197 (845)
T ss_pred hCCCcCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCce
Confidence 99999999999999999999999999999999999999999999999999 333444 4899
Q ss_pred EEEeecccCHHhHhhhhCCCCEEEeCCeeeeEEEEEEcCCchhH-HHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHH
Q 035699 458 LLISSATLDAENFSDYFGSAPIFKIPRRRYHVELFYTKAPEADY-IEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEE 536 (633)
Q Consensus 458 lil~SAT~~~~~~s~~f~~~pii~i~gr~~pv~~~y~~~~~~~y-l~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~ 536 (633)
+|+||||+|.++|+.||+++|++.++|+.|||+++|.+.+..+| +.+++...++++.....|+||||+||+.+|+.+++
T Consensus 198 iIimSATld~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~ 277 (845)
T COG1643 198 LIIMSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAE 277 (845)
T ss_pred EEEEecccCHHHHHHHcCCCCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccccccCCCCc
Q 035699 537 ILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVKSYNPKTGM 616 (633)
Q Consensus 537 ~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~~yd~~~g~ 616 (633)
.|.+ ..++ +.+.|+||||.||..+|.++|++.+.|+||||+||||||||||||||.||||+|+.|.+.||+++|+
T Consensus 278 ~L~~--~~l~---~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~ 352 (845)
T COG1643 278 WLEK--AELG---DDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGL 352 (845)
T ss_pred HHHh--cccc---CCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCc
Confidence 9998 1222 4789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeeccHHHHhhcC
Q 035699 617 ESLLVNPISKASANQRT 633 (633)
Q Consensus 617 ~~l~~~~iSka~a~QR~ 633 (633)
+.|.++|||||+|+||+
T Consensus 353 ~~L~~~~ISqAsA~QRa 369 (845)
T COG1643 353 TRLETEPISKASADQRA 369 (845)
T ss_pred eeeeEEEechhhhhhhc
Confidence 99999999999999996
No 5
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.4e-68 Score=557.17 Aligned_cols=312 Identities=56% Similarity=0.896 Sum_probs=298.1
Q ss_pred HHHHHHHHHHccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHH
Q 035699 317 SALEMLQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQ 396 (633)
Q Consensus 317 ~~~~~l~~~r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~ 396 (633)
.++..|++.|..||+|.++++++..+.+||.++++|+||||||||+|||+.+......+.|.||||||++||++|.|||+
T Consensus 34 ~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrvaamsva~RVad 113 (699)
T KOG0925|consen 34 QRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVAAMSVAQRVAD 113 (699)
T ss_pred HHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHHHHHHHHHHHHH
Confidence 57888999999999999999999999999999999999999999999999987766667899999999999999999999
Q ss_pred HhCCcccceEeeeeecccccCCCCcEEEeCchHHHHHHhcCCCCCCceeee-------------------eecccCCCcc
Q 035699 397 EMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREIVLEPSLESYSVLI-------------------DLINYRPDLK 457 (633)
Q Consensus 397 e~g~~vg~~VGy~ir~e~~~s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-------------------di~~~rpdlk 457 (633)
+|.+.+|.+|||+|+|++|++++|-+.|||+|||+++.+++|.|..|++|| ++...|||+|
T Consensus 114 EMDv~lG~EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~rpdLk 193 (699)
T KOG0925|consen 114 EMDVTLGEEVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNRPDLK 193 (699)
T ss_pred HhccccchhccccccccccCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHHHHHHHHHHHHhhCCCce
Confidence 999999999999999999999999999999999999999999999999999 4456789999
Q ss_pred EEEeecccCHHhHhhhhCCCCEEEeCCeeeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHH
Q 035699 458 LLISSATLDAENFSDYFGSAPIFKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEI 537 (633)
Q Consensus 458 lil~SAT~~~~~~s~~f~~~pii~i~gr~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~ 537 (633)
+|+||||+++.+|..||+|+|++.||| +|||+++|++.++.+|+++++.++++||....+|+||||++|.++|+.+++.
T Consensus 194 ~vvmSatl~a~Kfq~yf~n~Pll~vpg-~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~ 272 (699)
T KOG0925|consen 194 LVVMSATLDAEKFQRYFGNAPLLAVPG-THPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRK 272 (699)
T ss_pred EEEeecccchHHHHHHhCCCCeeecCC-CCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHH
Confidence 999999999999999999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCC-----CeeEEEeCCccccCCCCCCccEEEeCCCCccccccC
Q 035699 538 LKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEG-----ARKVVLATNIAETSLTIDGIKYVIDPGFAKVKSYNP 612 (633)
Q Consensus 538 L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g-----~rkVLvATdIAerGLdIp~V~~VID~G~~k~~~yd~ 612 (633)
+......|++....+.|+|+| +.++..||++.|.. .|||||+|||||++|+||+|.||||+||.++++|||
T Consensus 273 i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNP 348 (699)
T KOG0925|consen 273 ISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNP 348 (699)
T ss_pred HHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCc
Confidence 998788899988999999999 56677899988743 599999999999999999999999999999999999
Q ss_pred CCCceeeeeeeccHHHHhhcC
Q 035699 613 KTGMESLLVNPISKASANQRT 633 (633)
Q Consensus 613 ~~g~~~l~~~~iSka~a~QR~ 633 (633)
+...++|.+.|||||+|.||+
T Consensus 349 RIRvesllv~PISkasA~qR~ 369 (699)
T KOG0925|consen 349 RIRVESLLVSPISKASAQQRA 369 (699)
T ss_pred ceeeeeeeeccchHhHHHHHh
Confidence 999999999999999999996
No 6
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-60 Score=524.17 Aligned_cols=315 Identities=47% Similarity=0.716 Sum_probs=289.4
Q ss_pred HHHHHHHHHccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccC-----CeeeecchhHHHHHHHHH
Q 035699 318 ALEMLQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQ-----GKIGCTQLRRVAAMSVAA 392 (633)
Q Consensus 318 ~~~~l~~~r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~-----gkilitqPrR~aA~qva~ 392 (633)
+-.++|+.|..|||..--+.|..+|..|.+|||||+||||||||+||+|+++||... |-|+||||||+||..+|+
T Consensus 244 R~~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAk 323 (1172)
T KOG0926|consen 244 RPAEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAK 323 (1172)
T ss_pred CcHHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHH
Confidence 456899999999999999999999999999999999999999999999999999754 489999999999999999
Q ss_pred HHHHHhCCcccceEeeeeecccccCCCCcEEEeCchHHHHHHhcCCCCCCceeee-eecccC------------------
Q 035699 393 RVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREIVLEPSLESYSVLI-DLINYR------------------ 453 (633)
Q Consensus 393 rva~e~g~~vg~~VGy~ir~e~~~s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-di~~~r------------------ 453 (633)
||+.++|. +|..|||+|||+...++.|.|++||+|.||+++.++..|..||+|| |.+|.|
T Consensus 324 RVa~EL~~-~~~eVsYqIRfd~ti~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR 402 (1172)
T KOG0926|consen 324 RVAFELGV-LGSEVSYQIRFDGTIGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLR 402 (1172)
T ss_pred HHHHHhcc-CccceeEEEEeccccCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999999999999999999999999 333322
Q ss_pred ----------CCccEEEeecccCHHhHh---hhhC-CCCEEEeCCeeeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCC
Q 035699 454 ----------PDLKLLISSATLDAENFS---DYFG-SAPIFKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIG 519 (633)
Q Consensus 454 ----------pdlklil~SAT~~~~~~s---~~f~-~~pii~i~gr~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g 519 (633)
..+|+|+||||+-+..|+ ..|+ .+|++.|+.|.|||.+||......+|+..++.-.+.||...|+|
T Consensus 403 ~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G 482 (1172)
T KOG0926|consen 403 QKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPG 482 (1172)
T ss_pred HHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEEEeccCCCchHHHHHHHHHHHHhhcCCCC
Confidence 247999999999888887 3565 56799999999999999999998999999999999999999999
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhcc---------------------------------------------------c---
Q 035699 520 DILVFLTGQDQFETAEEILKQRTRG---------------------------------------------------L--- 545 (633)
Q Consensus 520 ~iLVFl~t~~eie~l~~~L~~~~~~---------------------------------------------------l--- 545 (633)
.||||++|+.+|+.+++.|+++++. .
T Consensus 483 ~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~ 562 (1172)
T KOG0926|consen 483 GILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFA 562 (1172)
T ss_pred cEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccch
Confidence 9999999999999999999987320 0
Q ss_pred ---------------CC---------------------CCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCcccc
Q 035699 546 ---------------GT---------------------KIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAET 589 (633)
Q Consensus 546 ---------------~~---------------------~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAer 589 (633)
++ ....+.|.|||+-|+...|.++|...|.|.|-+||||||||+
T Consensus 563 ~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAET 642 (1172)
T KOG0926|consen 563 SLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAET 642 (1172)
T ss_pred hhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhc
Confidence 00 012688999999999999999999999999999999999999
Q ss_pred CCCCCCccEEEeCCCCccccccCCCCceeeeeeeccHHHHhhcC
Q 035699 590 SLTIDGIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQRT 633 (633)
Q Consensus 590 GLdIp~V~~VID~G~~k~~~yd~~~g~~~l~~~~iSka~a~QR~ 633 (633)
|||||||.||||||+.|...||..||++++.+.|||||||+|||
T Consensus 643 SLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRA 686 (1172)
T KOG0926|consen 643 SLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRA 686 (1172)
T ss_pred ccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhc
Confidence 99999999999999999999999999999999999999999997
No 7
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=100.00 E-value=4.8e-60 Score=541.93 Aligned_cols=315 Identities=42% Similarity=0.671 Sum_probs=283.3
Q ss_pred HHHHHHHHHHccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCC--eeeecchhHHHHHHHHHHH
Q 035699 317 SALEMLQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQG--KIGCTQLRRVAAMSVAARV 394 (633)
Q Consensus 317 ~~~~~l~~~r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~g--kilitqPrR~aA~qva~rv 394 (633)
..++.+++.|++||+|.++++|+++|.++++++|+|+||||||||+||++++..+..++ +|+||||||.+|++||+||
T Consensus 160 ~~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRV 239 (924)
T KOG0920|consen 160 ESYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERV 239 (924)
T ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHH
Confidence 47788999999999999999999999999999999999999999999999987655444 8999999999999999999
Q ss_pred HHHhCCcccceEeeeeecccccCCCCcEEEeCchHHHHHHhcCCCCCCceeee-------------------eecccCCC
Q 035699 395 SQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREIVLEPSLESYSVLI-------------------DLINYRPD 455 (633)
Q Consensus 395 a~e~g~~vg~~VGy~ir~e~~~s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-------------------di~~~rpd 455 (633)
+.+.|...|..|||++|.+...+..|.|+|||.|.||+.+..++.|.+++++| +++..+|+
T Consensus 240 a~ER~~~~g~~VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~ 319 (924)
T KOG0920|consen 240 AKERGESLGEEVGYQVRLESKRSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPD 319 (924)
T ss_pred HHHhccccCCeeeEEEeeecccCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCC
Confidence 99999999999999999999988889999999999999999999999999999 45677899
Q ss_pred ccEEEeecccCHHhHhhhhCCCCEEEeCCeeeeEEEEEEcC-----------------Cchh--------------HHHH
Q 035699 456 LKLLISSATLDAENFSDYFGSAPIFKIPRRRYHVELFYTKA-----------------PEAD--------------YIEA 504 (633)
Q Consensus 456 lklil~SAT~~~~~~s~~f~~~pii~i~gr~~pv~~~y~~~-----------------~~~~--------------yl~~ 504 (633)
+|+||||||+|++.|+.||++||+++|||++|||..+|... ++.+ ..+.
T Consensus 320 LkvILMSAT~dae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~L 399 (924)
T KOG0920|consen 320 LKVILMSATLDAELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDL 399 (924)
T ss_pred ceEEEeeeecchHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHH
Confidence 99999999999999999999999999999999998887421 1111 0122
Q ss_pred HHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeC
Q 035699 505 AIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLAT 584 (633)
Q Consensus 505 ~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvAT 584 (633)
....+..|+.....|.||||+||+.+|..+++.|....... . ...+.+.|+||.|+..+|..+|...|.|.||||+||
T Consensus 400 i~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~-~-~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaT 477 (924)
T KOG0920|consen 400 IEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFA-D-SLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILAT 477 (924)
T ss_pred HHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccc-c-ccceEEEeccccCChHHHHHhcCCCCCCcchhhhhh
Confidence 23445566666668999999999999999999998653221 1 146999999999999999999999999999999999
Q ss_pred CccccCCCCCCccEEEeCCCCccccccCCCCceeeeeeeccHHHHhhcC
Q 035699 585 NIAETSLTIDGIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQRT 633 (633)
Q Consensus 585 dIAerGLdIp~V~~VID~G~~k~~~yd~~~g~~~l~~~~iSka~a~QR~ 633 (633)
||||+|||||+|.||||+|+.|+++|||.++++++..+|+|||+|.||+
T Consensus 478 NIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~ 526 (924)
T KOG0920|consen 478 NIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRR 526 (924)
T ss_pred hhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhc
Confidence 9999999999999999999999999999999999999999999999996
No 8
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1.1e-57 Score=540.70 Aligned_cols=300 Identities=43% Similarity=0.696 Sum_probs=272.3
Q ss_pred HHccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccc
Q 035699 325 ERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGH 404 (633)
Q Consensus 325 ~r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~ 404 (633)
.+..||++.++++|+.+|.+|+++||+|+|||||||++|+++++.+....+.|+||||||++|+++|.||+++++..+|.
T Consensus 69 ~~~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~ 148 (1294)
T PRK11131 69 YPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGG 148 (1294)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcc
Confidence 36789999999999999999999999999999999999999998876666689999999999999999999999999999
Q ss_pred eEeeeeecccccCCCCcEEEeCchHHHHHHhcCCCCCCceeee-ee------------------cccCCCccEEEeeccc
Q 035699 405 EVGYSIRFEDCTSDKTVLKYMTDGMLLREIVLEPSLESYSVLI-DL------------------INYRPDLKLLISSATL 465 (633)
Q Consensus 405 ~VGy~ir~e~~~s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-di------------------~~~rpdlklil~SAT~ 465 (633)
.|||.++++++.+.+|+|+|||||+|++++..++.|++|++|| |. +..+|++|+|+||||+
T Consensus 149 ~VGY~vrf~~~~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKvILmSATi 228 (1294)
T PRK11131 149 CVGYKVRFNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATI 228 (1294)
T ss_pred eeceeecCccccCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCCCceEEEeeCCC
Confidence 9999999999999999999999999999999999999999999 32 2345789999999999
Q ss_pred CHHhHhhhhCCCCEEEeCCeeeeEEEEEEcCCc------hhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHH
Q 035699 466 DAENFSDYFGSAPIFKIPRRRYHVELFYTKAPE------ADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILK 539 (633)
Q Consensus 466 ~~~~~s~~f~~~pii~i~gr~~pv~~~y~~~~~------~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~ 539 (633)
+.+.|++||.++|++.++|+.|||+++|.+.+. .+++...+..+..++ ..++|+|||||||+.+|+.+++.|.
T Consensus 229 d~e~fs~~F~~apvI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~-~~~~GdILVFLpg~~EIe~lae~L~ 307 (1294)
T PRK11131 229 DPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELG-REGPGDILIFMSGEREIRDTADALN 307 (1294)
T ss_pred CHHHHHHHcCCCCEEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHh-cCCCCCEEEEcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999987643 346665555555554 3457999999999999999999998
Q ss_pred HhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccccccCCCCceee
Q 035699 540 QRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVKSYNPKTGMESL 619 (633)
Q Consensus 540 ~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~~yd~~~g~~~l 619 (633)
.. +.+.+.|+++||+|++.+|.++|++ .|.++|||||||||||||||||+||||+|+++.+.|||++|++.|
T Consensus 308 ~~------~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~L 379 (1294)
T PRK11131 308 KL------NLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRL 379 (1294)
T ss_pred hc------CCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccC
Confidence 74 2245679999999999999999997 478999999999999999999999999999999999999999999
Q ss_pred eeeeccHHHHhhcC
Q 035699 620 LVNPISKASANQRT 633 (633)
Q Consensus 620 ~~~~iSka~a~QR~ 633 (633)
.+.|||++++.||+
T Consensus 380 p~~~iSkasa~QRa 393 (1294)
T PRK11131 380 PIEPISQASANQRK 393 (1294)
T ss_pred CeeecCHhhHhhhc
Confidence 99999999999996
No 9
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.4e-57 Score=527.79 Aligned_cols=298 Identities=41% Similarity=0.627 Sum_probs=270.7
Q ss_pred CCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccceEee
Q 035699 329 LPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGY 408 (633)
Q Consensus 329 LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~VGy 408 (633)
|||+.+..+|+.+|.+|+++||+|+|||||||++|+++++... .+++|+|++|||++|++++.++++++|..+|..|||
T Consensus 1 LPi~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy 79 (819)
T TIGR01970 1 LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGY 79 (819)
T ss_pred CCchHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEE
Confidence 7999999999999999999999999999999999999998753 345999999999999999999999999999999999
Q ss_pred eeecccccCCCCcEEEeCchHHHHHHhcCCCCCCceeee-eecc-------------------cCCCccEEEeecccCHH
Q 035699 409 SIRFEDCTSDKTVLKYMTDGMLLREIVLEPSLESYSVLI-DLIN-------------------YRPDLKLLISSATLDAE 468 (633)
Q Consensus 409 ~ir~e~~~s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-di~~-------------------~rpdlklil~SAT~~~~ 468 (633)
.++++++.+.+++|+|||||+|++++..++.|++|++|| |.+| .++++|+|+||||++.+
T Consensus 80 ~vr~~~~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~ 159 (819)
T TIGR01970 80 RVRGENKVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGE 159 (819)
T ss_pred EEccccccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHH
Confidence 999999888899999999999999999999999999999 3322 35688999999999999
Q ss_pred hHhhhhCCCCEEEeCCeeeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCC
Q 035699 469 NFSDYFGSAPIFKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTK 548 (633)
Q Consensus 469 ~~s~~f~~~pii~i~gr~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~ 548 (633)
.|+.||+++|++.++|+.|||+++|.+.+..+++...+...+..+.....|+|||||||+.+|+.+++.|.+...
T Consensus 160 ~l~~~l~~~~vI~~~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~~~~----- 234 (819)
T TIGR01970 160 RLSSLLPDAPVVESEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLAERLD----- 234 (819)
T ss_pred HHHHHcCCCcEEEecCcceeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHhhcC-----
Confidence 999999999999999999999999998876666655444333323333469999999999999999999987431
Q ss_pred CCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccccccCCCCceeeeeeeccHHH
Q 035699 549 IAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVKSYNPKTGMESLLVNPISKAS 628 (633)
Q Consensus 549 ~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~~yd~~~g~~~l~~~~iSka~ 628 (633)
+++.++++||+|++.+|..+|++|++|.++|||||||||||||||+|+||||+|+++...|||.+||+.|.++|||||+
T Consensus 235 -~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkas 313 (819)
T TIGR01970 235 -SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQAS 313 (819)
T ss_pred -CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHH
Confidence 3789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcC
Q 035699 629 ANQRT 633 (633)
Q Consensus 629 a~QR~ 633 (633)
|.||+
T Consensus 314 a~QR~ 318 (819)
T TIGR01970 314 ATQRA 318 (819)
T ss_pred HHhhh
Confidence 99996
No 10
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.3e-57 Score=541.51 Aligned_cols=301 Identities=45% Similarity=0.720 Sum_probs=272.7
Q ss_pred HHHccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCccc
Q 035699 324 EERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLG 403 (633)
Q Consensus 324 ~~r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg 403 (633)
..+..||++.++++|+.+|.+|+++||+|+|||||||++|+++++.+....++|+||||||++|+++|.||++++|..+|
T Consensus 61 ~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG 140 (1283)
T TIGR01967 61 RYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLG 140 (1283)
T ss_pred cCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcc
Confidence 34678999999999999999999999999999999999999999987766679999999999999999999999999999
Q ss_pred ceEeeeeecccccCCCCcEEEeCchHHHHHHhcCCCCCCceeee-ee------------------cccCCCccEEEeecc
Q 035699 404 HEVGYSIRFEDCTSDKTVLKYMTDGMLLREIVLEPSLESYSVLI-DL------------------INYRPDLKLLISSAT 464 (633)
Q Consensus 404 ~~VGy~ir~e~~~s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-di------------------~~~rpdlklil~SAT 464 (633)
..|||.++++++.+.+|.|+|||||+|++++..+|.|.+|++|| |. +..+|++|+|+||||
T Consensus 141 ~~VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIlmSAT 220 (1283)
T TIGR01967 141 EKVGYKVRFHDQVSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITSAT 220 (1283)
T ss_pred eEEeeEEcCCcccCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEEEeCC
Confidence 99999999999999999999999999999999999999999999 22 345789999999999
Q ss_pred cCHHhHhhhhCCCCEEEeCCeeeeEEEEEEcCCc------hhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHH
Q 035699 465 LDAENFSDYFGSAPIFKIPRRRYHVELFYTKAPE------ADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEIL 538 (633)
Q Consensus 465 ~~~~~~s~~f~~~pii~i~gr~~pv~~~y~~~~~------~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L 538 (633)
++.+.|++||+++|++.++|+.|||+++|.+.+. .+++...+..+..++.. .+|+|||||||+.+|+.+++.|
T Consensus 221 ld~~~fa~~F~~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~-~~GdILVFLpg~~EI~~l~~~L 299 (1283)
T TIGR01967 221 IDPERFSRHFNNAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAE-GPGDILIFLPGEREIRDAAEIL 299 (1283)
T ss_pred cCHHHHHHHhcCCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHhh-CCCCEEEeCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999987542 24555555555555543 5699999999999999999999
Q ss_pred HHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccccccCCCCcee
Q 035699 539 KQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVKSYNPKTGMES 618 (633)
Q Consensus 539 ~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~~yd~~~g~~~ 618 (633)
.... .+++.|+++||+|++.+|.++|.++ +.++|||||||||||||||||+||||+|+++.+.|||++||+.
T Consensus 300 ~~~~------~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~ 371 (1283)
T TIGR01967 300 RKRN------LRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQR 371 (1283)
T ss_pred HhcC------CCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccc
Confidence 8742 2367899999999999999999876 3589999999999999999999999999999999999999999
Q ss_pred eeeeeccHHHHhhcC
Q 035699 619 LLVNPISKASANQRT 633 (633)
Q Consensus 619 l~~~~iSka~a~QR~ 633 (633)
|.+.|||+|++.||+
T Consensus 372 L~~~~ISkasa~QRa 386 (1283)
T TIGR01967 372 LPIEPISQASANQRK 386 (1283)
T ss_pred cCCccCCHHHHHHHh
Confidence 999999999999995
No 11
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1.1e-56 Score=523.22 Aligned_cols=299 Identities=39% Similarity=0.625 Sum_probs=273.4
Q ss_pred cCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccceEe
Q 035699 328 TLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVG 407 (633)
Q Consensus 328 ~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~VG 407 (633)
.||+|.+..+|+.++.+++++||+|+|||||||++|+++++.+.. +++|+|++|||++|++++.+++.++|..+|..||
T Consensus 3 ~LPi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~-~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VG 81 (812)
T PRK11664 3 SLPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI-NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVG 81 (812)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc-CCeEEEECChHHHHHHHHHHHHHHhCcccCceEE
Confidence 599999999999999999999999999999999999999987543 3599999999999999999999999999999999
Q ss_pred eeeecccccCCCCcEEEeCchHHHHHHhcCCCCCCceeee-eecc-------------------cCCCccEEEeecccCH
Q 035699 408 YSIRFEDCTSDKTVLKYMTDGMLLREIVLEPSLESYSVLI-DLIN-------------------YRPDLKLLISSATLDA 467 (633)
Q Consensus 408 y~ir~e~~~s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-di~~-------------------~rpdlklil~SAT~~~ 467 (633)
|.++++++.+.++.|+|||||+|++++..++.|++|++|| |.+| .++++|+|+||||++.
T Consensus 82 y~vr~~~~~~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~ 161 (812)
T PRK11664 82 YRMRAESKVGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDN 161 (812)
T ss_pred EEecCccccCCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCH
Confidence 9999999888889999999999999999999999999999 3332 3568899999999999
Q ss_pred HhHhhhhCCCCEEEeCCeeeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCC
Q 035699 468 ENFSDYFGSAPIFKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGT 547 (633)
Q Consensus 468 ~~~s~~f~~~pii~i~gr~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~ 547 (633)
+.|+.||++++++.++|+.|||+++|.+.+..+++...+..++..+.....|+|||||||+.+|+.+++.|.... +
T Consensus 162 ~~l~~~~~~~~~I~~~gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~---~- 237 (812)
T PRK11664 162 DRLQQLLPDAPVIVSEGRSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRV---A- 237 (812)
T ss_pred HHHHHhcCCCCEEEecCccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhc---c-
Confidence 999999999999999999999999999888777777665544444444457999999999999999999998632 1
Q ss_pred CCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccccccCCCCceeeeeeeccHH
Q 035699 548 KIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVKSYNPKTGMESLLVNPISKA 627 (633)
Q Consensus 548 ~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~~yd~~~g~~~l~~~~iSka 627 (633)
.++.++++||+|++.+|.++|.+|++|.++|||||||||||||||+|+||||+|+++...|||.+||+.|.++|||||
T Consensus 238 --~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSka 315 (812)
T PRK11664 238 --SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQA 315 (812)
T ss_pred --CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechh
Confidence 268899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcC
Q 035699 628 SANQRT 633 (633)
Q Consensus 628 ~a~QR~ 633 (633)
++.||+
T Consensus 316 sa~QR~ 321 (812)
T PRK11664 316 SMTQRA 321 (812)
T ss_pred hhhhhc
Confidence 999996
No 12
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.8e-41 Score=387.15 Aligned_cols=279 Identities=22% Similarity=0.285 Sum_probs=216.2
Q ss_pred HHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhc-----cc---------cCCeeeecchhHHHHHHHHHHHHHHhC
Q 035699 334 FREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAG-----YT---------KQGKIGCTQLRRVAAMSVAARVSQEMG 399 (633)
Q Consensus 334 ~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~-----~~---------~~gkilitqPrR~aA~qva~rva~e~g 399 (633)
+|+++++.+.+++++|++|+||||||+|+||+|++.. +. ..++|+|++|||+||.+++.++.+..|
T Consensus 168 iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~vg 247 (675)
T PHA02653 168 VQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSLG 247 (675)
T ss_pred HHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHhC
Confidence 5789999999999999999999999999999998742 11 123899999999999999999988777
Q ss_pred CcccceEeeeeecccccC-------CCCcEEEeCchHHHHHHhcCCCCCCceeee-eecccC---------------CC-
Q 035699 400 VKLGHEVGYSIRFEDCTS-------DKTVLKYMTDGMLLREIVLEPSLESYSVLI-DLINYR---------------PD- 455 (633)
Q Consensus 400 ~~vg~~VGy~ir~e~~~s-------~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-di~~~r---------------pd- 455 (633)
......+.+.++++++.+ ...+|+++|+|.. .+.|.++++|| |.+|.+ +.
T Consensus 248 ~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~------l~~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~~ 321 (675)
T PHA02653 248 FDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLT------LNKLFDYGTVIIDEVHEHDQIGDIIIAVARKHIDKI 321 (675)
T ss_pred ccccCCceEEEEECCcchHHhhcccCCCCEEEEeCccc------ccccccCCEEEccccccCccchhHHHHHHHHhhhhc
Confidence 532212333455544432 2457999998842 25689999999 555443 22
Q ss_pred ccEEEeeccc--CHHhHhhhhCCCCEEEeCCee-eeEEEEEEcCCc-----hhHHHHHHHHHHHHHhc---CCCCCEEEE
Q 035699 456 LKLLISSATL--DAENFSDYFGSAPIFKIPRRR-YHVELFYTKAPE-----ADYIEAAIVTALQIHVN---EPIGDILVF 524 (633)
Q Consensus 456 lklil~SAT~--~~~~~s~~f~~~pii~i~gr~-~pv~~~y~~~~~-----~~yl~~~v~~l~~i~~~---~~~g~iLVF 524 (633)
.|+++||||+ +.+.|..||++++++.++|+. +||+++|...+. .+|+......++.++.. ...|++|||
T Consensus 322 rq~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVF 401 (675)
T PHA02653 322 RSLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVF 401 (675)
T ss_pred CEEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEE
Confidence 3899999999 467899999999999999985 999999976432 23444333334443332 235799999
Q ss_pred cCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCC-CCCCeeEEEeCCccccCCCCCCccEEEeCC
Q 035699 525 LTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPT-PEGARKVVLATNIAETSLTIDGIKYVIDPG 603 (633)
Q Consensus 525 l~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f-~~g~rkVLvATdIAerGLdIp~V~~VID~G 603 (633)
|||+.+|+.+++.|.... +++.+.+|||+|++.+ .+++.| ++|.++|||||||||||||||||++|||+|
T Consensus 402 lpg~~ei~~l~~~L~~~~-------~~~~v~~LHG~Lsq~e--q~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G 472 (675)
T PHA02653 402 VASVSQCEEYKKYLEKRL-------PIYDFYIIHGKVPNID--EILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTG 472 (675)
T ss_pred ECcHHHHHHHHHHHHhhc-------CCceEEeccCCcCHHH--HHHHHHhccCceeEEeccChhhccccccCeeEEEECC
Confidence 999999999999998742 3689999999999864 344444 689999999999999999999999999999
Q ss_pred CCccccccCCCCceeeeeeeccHHHHhhcC
Q 035699 604 FAKVKSYNPKTGMESLLVNPISKASANQRT 633 (633)
Q Consensus 604 ~~k~~~yd~~~g~~~l~~~~iSka~a~QR~ 633 (633)
+++.+. |.+|++ .|||+|++.||+
T Consensus 473 ~~k~p~--~~~g~~----~~iSkasa~QRa 496 (675)
T PHA02653 473 RVYVPE--PFGGKE----MFISKSMRTQRK 496 (675)
T ss_pred CccCCC--cccCcc----cccCHHHHHHhc
Confidence 988774 666764 589999999996
No 13
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9e-41 Score=346.03 Aligned_cols=285 Identities=19% Similarity=0.188 Sum_probs=225.1
Q ss_pred HHHHHHHHHccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCC--eeeecchhHHHHHHHHHHHH
Q 035699 318 ALEMLQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQG--KIGCTQLRRVAAMSVAARVS 395 (633)
Q Consensus 318 ~~~~l~~~r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~g--kilitqPrR~aA~qva~rva 395 (633)
..+.+++.--..|...+++.|+ .+.++.+||+.|+||||||.+|.+|++...+..+. .++|+.|||+||.||+. +.
T Consensus 72 L~~ac~~l~~~~PT~IQ~~aiP-~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e-~f 149 (476)
T KOG0330|consen 72 LLEACQELGWKKPTKIQSEAIP-VALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAE-QF 149 (476)
T ss_pred HHHHHHHhCcCCCchhhhhhcc-hhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHH-HH
Confidence 4455666566778877766665 55566669999999999999999999998777655 89999999999999998 44
Q ss_pred HHhCCcccceEeeeeecccc------cCCCCcEEEeCchHHHHHHhcCC--CCCCceeee-----------------eec
Q 035699 396 QEMGVKLGHEVGYSIRFEDC------TSDKTVLKYMTDGMLLREIVLEP--SLESYSVLI-----------------DLI 450 (633)
Q Consensus 396 ~e~g~~vg~~VGy~ir~e~~------~s~~t~Iiv~TpGrLL~~l~~~~--~L~~~s~vI-----------------di~ 450 (633)
+-+|..+|..|..-+++.+. .+.+++|+|+|||+|.+++.+.. .|..++++| -|+
T Consensus 150 e~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~IL 229 (476)
T KOG0330|consen 150 EALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYIL 229 (476)
T ss_pred HHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHH
Confidence 66766666665555555443 25789999999999999998544 789999998 123
Q ss_pred cc-CCCccEEEeeccc--CHHhHhhhhCCCC-EEEeCCeee---eEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEE
Q 035699 451 NY-RPDLKLLISSATL--DAENFSDYFGSAP-IFKIPRRRY---HVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILV 523 (633)
Q Consensus 451 ~~-rpdlklil~SAT~--~~~~~s~~f~~~p-ii~i~gr~~---pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLV 523 (633)
.. +++.|++|||||| ++.++..--.+.| -+.++.... .+.++|...|.... ...+++++.....+.+||
T Consensus 230 k~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K----~~yLV~ll~e~~g~s~iV 305 (476)
T KOG0330|consen 230 KVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDK----DTYLVYLLNELAGNSVIV 305 (476)
T ss_pred HhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEecccccc----chhHHHHHHhhcCCcEEE
Confidence 33 3578999999999 5566765444444 455554322 35677887775543 234555555556689999
Q ss_pred EcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCC
Q 035699 524 FLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPG 603 (633)
Q Consensus 524 Fl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G 603 (633)
||+|+....+++-+|... +|.+++|||.|++..|..+|+.|+.|.+.||+|||||+||||||.|++||||+
T Consensus 306 F~~t~~tt~~la~~L~~l---------g~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyD 376 (476)
T KOG0330|consen 306 FCNTCNTTRFLALLLRNL---------GFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYD 376 (476)
T ss_pred EEeccchHHHHHHHHHhc---------CcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecC
Confidence 999999999999999885 89999999999999999999999999999999999999999999999999999
Q ss_pred CCcc-ccccCCCCce
Q 035699 604 FAKV-KSYNPKTGME 617 (633)
Q Consensus 604 ~~k~-~~yd~~~g~~ 617 (633)
+|.. ..|.||.|..
T Consensus 377 iP~~skDYIHRvGRt 391 (476)
T KOG0330|consen 377 IPTHSKDYIHRVGRT 391 (476)
T ss_pred CCCcHHHHHHHcccc
Confidence 9987 4599988763
No 14
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-38 Score=336.30 Aligned_cols=276 Identities=20% Similarity=0.221 Sum_probs=217.7
Q ss_pred CChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhcccc-----CC--eeeecchhHHHHHHHHHHHHHHhCC--
Q 035699 330 PIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTK-----QG--KIGCTQLRRVAAMSVAARVSQEMGV-- 400 (633)
Q Consensus 330 Pi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~-----~g--kilitqPrR~aA~qva~rva~e~g~-- 400 (633)
-+.|+|...++.+.++++|++.|+||||||++|..|+++..+.. ++ ..+|+.|||+||.||.. |+..+-.
T Consensus 28 ~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~-V~~~F~~~l 106 (567)
T KOG0345|consen 28 KMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIRE-VAQPFLEHL 106 (567)
T ss_pred ccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHH-HHHHHHHhh
Confidence 46789999999999999999999999999999999998865432 22 57899999999999877 4443322
Q ss_pred ---cccceEeeeeeccccc---CCCCcEEEeCchHHHHHHhcCC-CCC--Cceeee-----------------eecccCC
Q 035699 401 ---KLGHEVGYSIRFEDCT---SDKTVLKYMTDGMLLREIVLEP-SLE--SYSVLI-----------------DLINYRP 454 (633)
Q Consensus 401 ---~vg~~VGy~ir~e~~~---s~~t~Iiv~TpGrLL~~l~~~~-~L~--~~s~vI-----------------di~~~rp 454 (633)
.....||...-.+|.. .++++|+|||||||++++.... .++ +++++| .|+.+.|
T Consensus 107 ~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~LP 186 (567)
T KOG0345|consen 107 PNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLP 186 (567)
T ss_pred hccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccHHHHHHHHHHhcc
Confidence 2223344322222221 4678999999999999998754 444 899998 4566667
Q ss_pred -CccEEEeecccC--HHhHhh-hhCCCCEEEeCCee---ee--EEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEc
Q 035699 455 -DLKLLISSATLD--AENFSD-YFGSAPIFKIPRRR---YH--VELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFL 525 (633)
Q Consensus 455 -dlklil~SAT~~--~~~~s~-~f~~~pii~i~gr~---~p--v~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl 525 (633)
+.++-|||||++ ++.+.. .+.|+.-+.+.... -| +..+|..++-. .++..+++++.+...+++|||+
T Consensus 187 KQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~----eK~~~lv~~L~~~~~kK~iVFF 262 (567)
T KOG0345|consen 187 KQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEAD----EKLSQLVHLLNNNKDKKCIVFF 262 (567)
T ss_pred cccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHH----HHHHHHHHHHhccccccEEEEe
Confidence 677889999994 345554 45666656664433 34 67777766533 3456677778777789999999
Q ss_pred CcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCC
Q 035699 526 TGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFA 605 (633)
Q Consensus 526 ~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~ 605 (633)
|||.+|++.+..|.... +...++++||.|.+.+|.++++.|......|++|||||+||||||||+|||.++.|
T Consensus 263 ~TCasVeYf~~~~~~~l-------~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP 335 (567)
T KOG0345|consen 263 PTCASVEYFGKLFSRLL-------KKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPP 335 (567)
T ss_pred cCcchHHHHHHHHHHHh-------CCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCC
Confidence 99999999999998763 47899999999999999999999999889999999999999999999999999999
Q ss_pred cccc-ccCCCCce
Q 035699 606 KVKS-YNPKTGME 617 (633)
Q Consensus 606 k~~~-yd~~~g~~ 617 (633)
+.++ |.|++|.+
T Consensus 336 ~~~~~FvHR~GRT 348 (567)
T KOG0345|consen 336 KDPSSFVHRCGRT 348 (567)
T ss_pred CChhHHHhhcchh
Confidence 9864 99998875
No 15
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-36 Score=341.73 Aligned_cols=286 Identities=20% Similarity=0.282 Sum_probs=215.9
Q ss_pred HHHHHHHHHccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhcc--ccCC-e-eeecchhHHHHHHHHHH
Q 035699 318 ALEMLQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGY--TKQG-K-IGCTQLRRVAAMSVAAR 393 (633)
Q Consensus 318 ~~~~l~~~r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~--~~~g-k-ilitqPrR~aA~qva~r 393 (633)
..+.|.+.--.-| .++|...++.+..++++++.|+||||||.+|.+|+++... .... . ++|+.|||+||+||+..
T Consensus 40 ll~~l~~~gf~~p-t~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~ 118 (513)
T COG0513 40 LLQALKDLGFEEP-TPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEE 118 (513)
T ss_pred HHHHHHHcCCCCC-CHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHH
Confidence 3444544233344 4556666677777788999999999999999999998743 1222 2 89999999999999885
Q ss_pred HHHHhCCcc-cceEeeeeecccc------cCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-----------------e
Q 035699 394 VSQEMGVKL-GHEVGYSIRFEDC------TSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-----------------D 448 (633)
Q Consensus 394 va~e~g~~v-g~~VGy~ir~e~~------~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-----------------d 448 (633)
+.. ++... +..+...+++.+. ...+++|+|+|||||++++.... +|+++.++| .
T Consensus 119 ~~~-~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~ 197 (513)
T COG0513 119 LRK-LGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEK 197 (513)
T ss_pred HHH-HHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHHHHH
Confidence 543 32222 2223322322221 13469999999999999998775 899999999 2
Q ss_pred ecccCC-CccEEEeecccCH--HhHh-hhhCCCCEEEeCC-----eeeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCC
Q 035699 449 LINYRP-DLKLLISSATLDA--ENFS-DYFGSAPIFKIPR-----RRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIG 519 (633)
Q Consensus 449 i~~~rp-dlklil~SAT~~~--~~~s-~~f~~~pii~i~g-----r~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g 519 (633)
|+...| +.|+++||||++. ..++ .|+.++..+.+.. ..-.+.++|...+... .++..+..++.....+
T Consensus 198 I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~---~k~~~L~~ll~~~~~~ 274 (513)
T COG0513 198 ILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEE---EKLELLLKLLKDEDEG 274 (513)
T ss_pred HHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHH---HHHHHHHHHHhcCCCC
Confidence 333334 7899999999965 3444 3555555555541 1234677777766544 3455677777767777
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEE
Q 035699 520 DILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYV 599 (633)
Q Consensus 520 ~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~V 599 (633)
++||||+|+..|+.++..|... ++.+..|||+|+|.+|..+++.|..|..+||||||||+||||||+|++|
T Consensus 275 ~~IVF~~tk~~~~~l~~~l~~~---------g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~V 345 (513)
T COG0513 275 RVIVFVRTKRLVEELAESLRKR---------GFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHV 345 (513)
T ss_pred eEEEEeCcHHHHHHHHHHHHHC---------CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCcccccee
Confidence 8999999999999999999885 7999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCccc-cccCCCCce
Q 035699 600 IDPGFAKVK-SYNPKTGME 617 (633)
Q Consensus 600 ID~G~~k~~-~yd~~~g~~ 617 (633)
||+++|... .|.|+.|.+
T Consensus 346 inyD~p~~~e~yvHRiGRT 364 (513)
T COG0513 346 INYDLPLDPEDYVHRIGRT 364 (513)
T ss_pred EEccCCCCHHHheeccCcc
Confidence 999999875 499988763
No 16
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-37 Score=332.27 Aligned_cols=287 Identities=17% Similarity=0.208 Sum_probs=219.6
Q ss_pred HHHHHHHHHccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhcccc-----CC-eeeecchhHHHHHHHH
Q 035699 318 ALEMLQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTK-----QG-KIGCTQLRRVAAMSVA 391 (633)
Q Consensus 318 ~~~~l~~~r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~-----~g-kilitqPrR~aA~qva 391 (633)
....|.+..-..|...+++.|..++.+ .+|+..|.||||||++|..|+++..|.. .| .++|+.|||+||.|++
T Consensus 80 t~kgLke~~fv~~teiQ~~~Ip~aL~G-~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtF 158 (758)
T KOG0343|consen 80 TLKGLKEAKFVKMTEIQRDTIPMALQG-HDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTF 158 (758)
T ss_pred HHHhHhhcCCccHHHHHHhhcchhccC-cccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHH
Confidence 344555544555555566666555555 5589999999999999999988876532 23 7899999999999987
Q ss_pred HHH---HHHhCCcccceEe-eeeecccccCCCCcEEEeCchHHHHHHhcCCCC--CCceeee-----------------e
Q 035699 392 ARV---SQEMGVKLGHEVG-YSIRFEDCTSDKTVLKYMTDGMLLREIVLEPSL--ESYSVLI-----------------D 448 (633)
Q Consensus 392 ~rv---a~e~g~~vg~~VG-y~ir~e~~~s~~t~Iiv~TpGrLL~~l~~~~~L--~~~s~vI-----------------d 448 (633)
..+ +...+...|..+| ..+.++...-.+.+|+||||||||+||..+|.+ +++.++| +
T Consensus 159 evL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~ 238 (758)
T KOG0343|consen 159 EVLNKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNA 238 (758)
T ss_pred HHHHHHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHH
Confidence 643 3344444444443 222233333467899999999999999999955 5566666 3
Q ss_pred ecccC-CCccEEEeeccc--CHHhHhhhh-CCCCEEEeC-----CeeeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCC
Q 035699 449 LINYR-PDLKLLISSATL--DAENFSDYF-GSAPIFKIP-----RRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIG 519 (633)
Q Consensus 449 i~~~r-pdlklil~SAT~--~~~~~s~~f-~~~pii~i~-----gr~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g 519 (633)
|+... +..|++|||||. ++..++... .++.++.+- +..-.+.++|...|..+ .+..++.++.++...
T Consensus 239 Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~----Ki~~L~sFI~shlk~ 314 (758)
T KOG0343|consen 239 IIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLED----KIDMLWSFIKSHLKK 314 (758)
T ss_pred HHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhh----HHHHHHHHHHhcccc
Confidence 44444 477899999999 567777764 455555442 11223567777777554 566888889999899
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEE
Q 035699 520 DILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYV 599 (633)
Q Consensus 520 ~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~V 599 (633)
++|||+.||..|..+|+.++..- |++++..|||.|.|..|..++..|-....-||+||||++||||+|.|+||
T Consensus 315 K~iVF~SscKqvkf~~e~F~rlr-------pg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwV 387 (758)
T KOG0343|consen 315 KSIVFLSSCKQVKFLYEAFCRLR-------PGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWV 387 (758)
T ss_pred ceEEEEehhhHHHHHHHHHHhcC-------CCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceE
Confidence 99999999999999999998863 68999999999999999999999998889999999999999999999999
Q ss_pred EeCCCCcc-ccccCCCCc
Q 035699 600 IDPGFAKV-KSYNPKTGM 616 (633)
Q Consensus 600 ID~G~~k~-~~yd~~~g~ 616 (633)
|.++.|.. .+|.|+.|.
T Consensus 388 iQ~DCPedv~tYIHRvGR 405 (758)
T KOG0343|consen 388 IQVDCPEDVDTYIHRVGR 405 (758)
T ss_pred EEecCchhHHHHHHHhhh
Confidence 99999976 569888776
No 17
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-36 Score=329.11 Aligned_cols=278 Identities=18% Similarity=0.215 Sum_probs=203.5
Q ss_pred cCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccc------c--CCeeeecchhHHHHHHHHHHHHHHhC
Q 035699 328 TLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYT------K--QGKIGCTQLRRVAAMSVAARVSQEMG 399 (633)
Q Consensus 328 ~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~------~--~gkilitqPrR~aA~qva~rva~e~g 399 (633)
.-|+ ++|...++.+.++.++|..|.||||||++|.+|+...... . +..++|+.|||+||.||.+ .+.+++
T Consensus 112 ~~Pt-pIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~-~~~~~~ 189 (519)
T KOG0331|consen 112 EKPT-PIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQA-EAREFG 189 (519)
T ss_pred CCCc-hhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHH-HHHHHc
Confidence 3344 5566667788888999999999999999987775543222 1 1279999999999999987 555665
Q ss_pred Ccccce----Ee-eeeecc-cccCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-----------------eeccc--C
Q 035699 400 VKLGHE----VG-YSIRFE-DCTSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-----------------DLINY--R 453 (633)
Q Consensus 400 ~~vg~~----VG-y~ir~e-~~~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-----------------di~~~--r 453 (633)
..++.. .| ...+.. .+...+..|+|+|||||++++.... +|+.++++| .|+.. +
T Consensus 190 ~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~ 269 (519)
T KOG0331|consen 190 KSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPR 269 (519)
T ss_pred CCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHHHHhcCC
Confidence 554421 12 111111 1224568999999999999998776 899999999 23332 4
Q ss_pred CCccEEEeecccC--HHhHhh-hhCCCCEEEeCCe-----eeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEc
Q 035699 454 PDLKLLISSATLD--AENFSD-YFGSAPIFKIPRR-----RYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFL 525 (633)
Q Consensus 454 pdlklil~SAT~~--~~~~s~-~f~~~pii~i~gr-----~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl 525 (633)
|+.|+|++|||++ +..|+. |+.+...+.+-+. .+.+.+.....+..... ..+..++..+...+.|++||||
T Consensus 270 ~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~-~~l~~lL~~~~~~~~~KvIIFc 348 (519)
T KOG0331|consen 270 PDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKL-RKLGKLLEDISSDSEGKVIIFC 348 (519)
T ss_pred CcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHH-HHHHHHHHHHhccCCCcEEEEe
Confidence 5568999999994 566665 5553333444322 12233333333322222 2233344444455679999999
Q ss_pred CcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCC
Q 035699 526 TGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFA 605 (633)
Q Consensus 526 ~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~ 605 (633)
.|+..|+.|...|... ++.+.+|||+++|.+|..+++.|+.|...||||||||+||||||+|++|||+.||
T Consensus 349 ~tkr~~~~l~~~l~~~---------~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP 419 (519)
T KOG0331|consen 349 ETKRTCDELARNLRRK---------GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFP 419 (519)
T ss_pred cchhhHHHHHHHHHhc---------CcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCC
Confidence 9999999999999873 5899999999999999999999999999999999999999999999999999999
Q ss_pred cccc-ccCCCCce
Q 035699 606 KVKS-YNPKTGME 617 (633)
Q Consensus 606 k~~~-yd~~~g~~ 617 (633)
.... |-||+|.+
T Consensus 420 ~~vEdYVHRiGRT 432 (519)
T KOG0331|consen 420 NNVEDYVHRIGRT 432 (519)
T ss_pred CCHHHHHhhcCcc
Confidence 9865 99998854
No 18
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=4.1e-36 Score=319.34 Aligned_cols=276 Identities=17% Similarity=0.195 Sum_probs=214.5
Q ss_pred CCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccc-----cCC-eeeecchhHHHHHHHHHHHHHHhCCcc
Q 035699 329 LPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYT-----KQG-KIGCTQLRRVAAMSVAARVSQEMGVKL 402 (633)
Q Consensus 329 LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~-----~~g-kilitqPrR~aA~qva~rva~e~g~~v 402 (633)
.-+.++|+..++.+..++++++.|.||||||.+|++|..+..+. +++ .++|++|||+||+|++.-..+.+....
T Consensus 103 ~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~ 182 (543)
T KOG0342|consen 103 ETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYHE 182 (543)
T ss_pred cchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCC
Confidence 35678899999999999999999999999999999887775442 223 799999999999999986655555444
Q ss_pred cceEeeeeeccccc------CCCCcEEEeCchHHHHHHhcCC--CCCCceeee-e----------------ecccCC-Cc
Q 035699 403 GHEVGYSIRFEDCT------SDKTVLKYMTDGMLLREIVLEP--SLESYSVLI-D----------------LINYRP-DL 456 (633)
Q Consensus 403 g~~VGy~ir~e~~~------s~~t~Iiv~TpGrLL~~l~~~~--~L~~~s~vI-d----------------i~~~rp-dl 456 (633)
+..||+.|++.+.. ..+++|+|+|||||++|+.+.+ ...++.++| | |+...| +.
T Consensus 183 ~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk~r 262 (543)
T KOG0342|consen 183 SITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILPKQR 262 (543)
T ss_pred CcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHHhccccc
Confidence 66778777776543 2479999999999999999877 355566777 1 223334 57
Q ss_pred cEEEeecccCH--HhHhhh-hC-CCCEEEeCCee-----eeEEEEEEcCCchhHHHHHHHHHHHHHhcCCC-CCEEEEcC
Q 035699 457 KLLISSATLDA--ENFSDY-FG-SAPIFKIPRRR-----YHVELFYTKAPEADYIEAAIVTALQIHVNEPI-GDILVFLT 526 (633)
Q Consensus 457 klil~SAT~~~--~~~s~~-f~-~~pii~i~gr~-----~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~-g~iLVFl~ 526 (633)
|.++||||++. +.++.. +. ++..+.+.+.. .-+.+-|..+|....+.. ++.++..+.. .+|||||+
T Consensus 263 qt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~l----l~~~LKk~~~~~KiiVF~s 338 (543)
T KOG0342|consen 263 QTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSL----LYTFLKKNIKRYKIIVFFS 338 (543)
T ss_pred eeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHH----HHHHHHHhcCCceEEEEec
Confidence 89999999954 555543 22 33344442211 235676777776554333 3333333333 78999999
Q ss_pred cHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCc
Q 035699 527 GQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAK 606 (633)
Q Consensus 527 t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k 606 (633)
|+..+..++++|... .++|..|||+++|..|..++..|++....|||||||++||+|||+|++||.+|.|.
T Consensus 339 T~~~vk~~~~lL~~~---------dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~ 409 (543)
T KOG0342|consen 339 TCMSVKFHAELLNYI---------DLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPS 409 (543)
T ss_pred hhhHHHHHHHHHhhc---------CCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCC
Confidence 999999999999864 89999999999999999999999999999999999999999999999999999999
Q ss_pred ccc-ccCCCCce
Q 035699 607 VKS-YNPKTGME 617 (633)
Q Consensus 607 ~~~-yd~~~g~~ 617 (633)
.+. |.||.|.+
T Consensus 410 d~~~YIHRvGRT 421 (543)
T KOG0342|consen 410 DPEQYIHRVGRT 421 (543)
T ss_pred CHHHHHHHhccc
Confidence 865 99998864
No 19
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4e-36 Score=319.36 Aligned_cols=288 Identities=19% Similarity=0.263 Sum_probs=207.7
Q ss_pred HHHHHHHHHccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCC-----eeeecchhHHHHHHHHH
Q 035699 318 ALEMLQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQG-----KIGCTQLRRVAAMSVAA 392 (633)
Q Consensus 318 ~~~~l~~~r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~g-----kilitqPrR~aA~qva~ 392 (633)
.++.+.-.-..-|...++..|+-++.+ ++++.+|.||||||.+|.+|+++..+.++. +|+|++|||+||+||+.
T Consensus 192 lLka~~~lGy~~PTpIQ~a~IPvallg-kDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~s 270 (691)
T KOG0338|consen 192 LLKACSTLGYKKPTPIQVATIPVALLG-KDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHS 270 (691)
T ss_pred HHHHHHhcCCCCCCchhhhcccHHhhc-chhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHH
Confidence 344444445567877776666666665 458889999999999999999998765543 89999999999998754
Q ss_pred ---HHHHHhCCcccceEe-eeeeccc-ccCCCCcEEEeCchHHHHHHhcCC--CCCCceeee-----------------e
Q 035699 393 ---RVSQEMGVKLGHEVG-YSIRFED-CTSDKTVLKYMTDGMLLREIVLEP--SLESYSVLI-----------------D 448 (633)
Q Consensus 393 ---rva~e~g~~vg~~VG-y~ir~e~-~~s~~t~Iiv~TpGrLL~~l~~~~--~L~~~s~vI-----------------d 448 (633)
.+|+.....+|..|| ..++... .....++|+|+|||||++||.+.| +|+++.++| +
T Consensus 271 V~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnE 350 (691)
T KOG0338|consen 271 VTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNE 350 (691)
T ss_pred HHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHH
Confidence 455555555444444 2222211 124679999999999999999988 799999999 4
Q ss_pred ecccCC-CccEEEeecccC--HHhHhhhhCCCCE-EEe-CCeeee--EEEEEE-cCCchhHHHHHHHHHHHHHhcCCCCC
Q 035699 449 LINYRP-DLKLLISSATLD--AENFSDYFGSAPI-FKI-PRRRYH--VELFYT-KAPEADYIEAAIVTALQIHVNEPIGD 520 (633)
Q Consensus 449 i~~~rp-dlklil~SAT~~--~~~~s~~f~~~pi-i~i-~gr~~p--v~~~y~-~~~~~~yl~~~v~~l~~i~~~~~~g~ 520 (633)
|++..| +.|.+||||||+ ++.|.....+.|+ +.+ |....+ +.+.|. ..|.......++ +..++...-...
T Consensus 351 ii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~--l~~l~~rtf~~~ 428 (691)
T KOG0338|consen 351 IIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAM--LASLITRTFQDR 428 (691)
T ss_pred HHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHH--HHHHHHHhcccc
Confidence 555555 678999999994 4666666555554 333 222211 122222 112222111111 111111122467
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEE
Q 035699 521 ILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVI 600 (633)
Q Consensus 521 iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VI 600 (633)
++||+.|...+..+.-+|-- -++.+..|||+|+|.+|..+++.|+.+...||||||+|+|||||+||..||
T Consensus 429 ~ivFv~tKk~AHRl~IllGL---------lgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVI 499 (691)
T KOG0338|consen 429 TIVFVRTKKQAHRLRILLGL---------LGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVI 499 (691)
T ss_pred eEEEEehHHHHHHHHHHHHH---------hhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEE
Confidence 99999999999998776643 388999999999999999999999999999999999999999999999999
Q ss_pred eCCCCcc-ccccCCCCce
Q 035699 601 DPGFAKV-KSYNPKTGME 617 (633)
Q Consensus 601 D~G~~k~-~~yd~~~g~~ 617 (633)
|+.+|+. .+|-|+.|.+
T Consensus 500 Ny~mP~t~e~Y~HRVGRT 517 (691)
T KOG0338|consen 500 NYAMPKTIEHYLHRVGRT 517 (691)
T ss_pred eccCchhHHHHHHHhhhh
Confidence 9999997 4699988864
No 20
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.4e-35 Score=299.17 Aligned_cols=273 Identities=19% Similarity=0.243 Sum_probs=205.2
Q ss_pred hHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccc-cCC-eeeecchhHHHHHHHHHHHHHHhCCcccceEeee
Q 035699 332 YPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYT-KQG-KIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYS 409 (633)
Q Consensus 332 ~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~-~~g-kilitqPrR~aA~qva~rva~e~g~~vg~~VGy~ 409 (633)
.|+|...+++|+.++++|.+|.||||||++|.+|+++.... ..| ..+|+.|||++|.|+++++.. +|..++..+...
T Consensus 31 TpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~a-lGk~l~lK~~vi 109 (442)
T KOG0340|consen 31 TPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIA-LGKLLNLKVSVI 109 (442)
T ss_pred CchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHH-hcccccceEEEE
Confidence 46788889999999999999999999999999999987432 223 789999999999999998853 444444444433
Q ss_pred eecccc------cCCCCcEEEeCchHHHHHHhcCC-----CCCCceeee-------------ee----cccCC-CccEEE
Q 035699 410 IRFEDC------TSDKTVLKYMTDGMLLREIVLEP-----SLESYSVLI-------------DL----INYRP-DLKLLI 460 (633)
Q Consensus 410 ir~e~~------~s~~t~Iiv~TpGrLL~~l~~~~-----~L~~~s~vI-------------di----~~~rp-dlklil 460 (633)
++|.+. .+.++++++||||+|-+++.+++ .+..+.++| |+ ....| ..+.+|
T Consensus 110 vGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~lP~~RQtLl 189 (442)
T KOG0340|consen 110 VGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECLPKPRQTLL 189 (442)
T ss_pred EccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccchhhHHhhhhccCCCccceEE
Confidence 444443 36789999999999999998874 477888888 11 22334 358999
Q ss_pred eecccCHHhHhhhhCCCCEE-----E---eCCeee--eEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHH
Q 035699 461 SSATLDAENFSDYFGSAPIF-----K---IPRRRY--HVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQ 530 (633)
Q Consensus 461 ~SAT~~~~~~s~~f~~~pii-----~---i~gr~~--pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~e 530 (633)
||||++-. ++..| ++|+- . ++|... .+.+.|.-.+... .++.+..++....+.+.+.++||++++.+
T Consensus 190 fSATitd~-i~ql~-~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~v-kdaYLv~~Lr~~~~~~~~simIFvnttr~ 266 (442)
T KOG0340|consen 190 FSATITDT-IKQLF-GCPITKSIAFELEVIDGVSTVETLYQGYILVSIDV-KDAYLVHLLRDFENKENGSIMIFVNTTRE 266 (442)
T ss_pred EEeehhhH-HHHhh-cCCcccccceEEeccCCCCchhhhhhheeecchhh-hHHHHHHHHhhhhhccCceEEEEeehhHH
Confidence 99999421 12222 22221 1 122211 1234455444321 12223344444555567999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCcccc-
Q 035699 531 FETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVKS- 609 (633)
Q Consensus 531 ie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~~- 609 (633)
|+.++..|+.. ++.+.++||.|||.+|...+..|+.+..+||||||||+||||||.|.+|||+++|..+.
T Consensus 267 cQ~l~~~l~~l---------e~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~ 337 (442)
T KOG0340|consen 267 CQLLSMTLKNL---------EVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKD 337 (442)
T ss_pred HHHHHHHHhhh---------ceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHH
Confidence 99999999885 89999999999999999999999999999999999999999999999999999999864
Q ss_pred ccCCCCce
Q 035699 610 YNPKTGME 617 (633)
Q Consensus 610 yd~~~g~~ 617 (633)
|.|+.|.+
T Consensus 338 yiHRvGRt 345 (442)
T KOG0340|consen 338 YIHRVGRT 345 (442)
T ss_pred HHHhhcch
Confidence 99988764
No 21
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=9.8e-34 Score=314.41 Aligned_cols=274 Identities=18% Similarity=0.194 Sum_probs=206.1
Q ss_pred CChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccC--CeeeecchhHHHHHHHHHHHHHHh----CCccc
Q 035699 330 PIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQ--GKIGCTQLRRVAAMSVAARVSQEM----GVKLG 403 (633)
Q Consensus 330 Pi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~--gkilitqPrR~aA~qva~rva~e~----g~~vg 403 (633)
..+++|.++++.+.++++++++||||||||+++.++++....... .+++|+.|||+||.|++..+.... +..+.
T Consensus 26 ~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~ 105 (460)
T PRK11776 26 EMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVL 105 (460)
T ss_pred CCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 456889999999999999999999999999999988887643322 278999999999999988665432 22222
Q ss_pred ceEee-eeecc-cccCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eecc----------------c-CCCccEEEee
Q 035699 404 HEVGY-SIRFE-DCTSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLIN----------------Y-RPDLKLLISS 462 (633)
Q Consensus 404 ~~VGy-~ir~e-~~~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~~----------------~-rpdlklil~S 462 (633)
..+|. .+... .....+++|+|||||+|++++.... .+.++++|| |.++ . .++.++++||
T Consensus 106 ~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~~~q~ll~S 185 (460)
T PRK11776 106 TLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPARRQTLLFS 185 (460)
T ss_pred EEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCcccEEEEEE
Confidence 22221 11100 1123578999999999999987655 789999998 4433 2 2356899999
Q ss_pred cccCH--HhHhhhhCCCC-EEEeCCe--eeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHH
Q 035699 463 ATLDA--ENFSDYFGSAP-IFKIPRR--RYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEI 537 (633)
Q Consensus 463 AT~~~--~~~s~~f~~~p-ii~i~gr--~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~ 537 (633)
||+.. ..+...|...| .+.+... ...+..+|...+.... +..+..++....++++||||+|+..++.+++.
T Consensus 186 AT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k----~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~ 261 (460)
T PRK11776 186 ATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPDER----LPALQRLLLHHQPESCVVFCNTKKECQEVADA 261 (460)
T ss_pred ecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcHHH----HHHHHHHHHhcCCCceEEEECCHHHHHHHHHH
Confidence 99943 55665554444 4444322 2235556655554433 33445555555678899999999999999999
Q ss_pred HHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccc-cccCCCCc
Q 035699 538 LKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVK-SYNPKTGM 616 (633)
Q Consensus 538 L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~-~yd~~~g~ 616 (633)
|... ++.+.++||+|++.+|..+++.|+.|..+||||||++++|||||+|++|||+|+|... .|-++.|.
T Consensus 262 L~~~---------~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GR 332 (460)
T PRK11776 262 LNAQ---------GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGR 332 (460)
T ss_pred HHhC---------CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhccc
Confidence 9874 7889999999999999999999999999999999999999999999999999999864 58888654
No 22
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.4e-33 Score=308.12 Aligned_cols=273 Identities=15% Similarity=0.151 Sum_probs=200.5
Q ss_pred CChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccc---------cCCeeeecchhHHHHHHHHHHHHHHhCC
Q 035699 330 PIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYT---------KQGKIGCTQLRRVAAMSVAARVSQEMGV 400 (633)
Q Consensus 330 Pi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~---------~~gkilitqPrR~aA~qva~rva~e~g~ 400 (633)
..+++|.+.++.+.++++++++||||||||+++..+++..... .+.+++|+.|||+||.|++..+ ..++.
T Consensus 30 ~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~-~~l~~ 108 (423)
T PRK04837 30 NCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADA-EPLAQ 108 (423)
T ss_pred CCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHH-HHHhc
Confidence 3457888888999999999999999999999988887654321 1237999999999999997744 33333
Q ss_pred cccceEeeeeeccc------ccCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eecc----------------cCC--
Q 035699 401 KLGHEVGYSIRFED------CTSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLIN----------------YRP-- 454 (633)
Q Consensus 401 ~vg~~VGy~ir~e~------~~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~~----------------~rp-- 454 (633)
..|..++....+.. ....+++|+|||||+|++++.... .++++.++| |.++ ..|
T Consensus 109 ~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~~ 188 (423)
T PRK04837 109 ATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPA 188 (423)
T ss_pred cCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcccHHHHHHHHHhCCCc
Confidence 33444443333322 123568999999999999987655 789999999 4332 222
Q ss_pred -CccEEEeecccCH--HhHh-hhhCCCCEEEeCCee---eeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCc
Q 035699 455 -DLKLLISSATLDA--ENFS-DYFGSAPIFKIPRRR---YHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTG 527 (633)
Q Consensus 455 -dlklil~SAT~~~--~~~s-~~f~~~pii~i~gr~---~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t 527 (633)
..+.++||||++. ..+. .++.++..+.+.... ..+...+...... ..+..+..++.....+++||||++
T Consensus 189 ~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~----~k~~~l~~ll~~~~~~~~lVF~~t 264 (423)
T PRK04837 189 NQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNE----EKMRLLQTLIEEEWPDRAIIFANT 264 (423)
T ss_pred cceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHH----HHHHHHHHHHHhcCCCeEEEEECC
Confidence 3457899999964 3333 455554444443211 1222222222222 233445555555556899999999
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCcc
Q 035699 528 QDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKV 607 (633)
Q Consensus 528 ~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~ 607 (633)
+..|+.+++.|... ++.+..+||+|++.+|..+++.|..|..+||||||+++||||||+|++|||+++|..
T Consensus 265 ~~~~~~l~~~L~~~---------g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s 335 (423)
T PRK04837 265 KHRCEEIWGHLAAD---------GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDD 335 (423)
T ss_pred HHHHHHHHHHHHhC---------CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCc
Confidence 99999999999774 788999999999999999999999999999999999999999999999999999987
Q ss_pred c-cccCCCCc
Q 035699 608 K-SYNPKTGM 616 (633)
Q Consensus 608 ~-~yd~~~g~ 616 (633)
. .|-++.|.
T Consensus 336 ~~~yiqR~GR 345 (423)
T PRK04837 336 CEDYVHRIGR 345 (423)
T ss_pred hhheEecccc
Confidence 5 48888875
No 23
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=5.2e-34 Score=304.38 Aligned_cols=286 Identities=18% Similarity=0.222 Sum_probs=215.7
Q ss_pred HHHHHHHHHHccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccc-----------cCCeeeecchhHH
Q 035699 317 SALEMLQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYT-----------KQGKIGCTQLRRV 385 (633)
Q Consensus 317 ~~~~~l~~~r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~-----------~~gkilitqPrR~ 385 (633)
..+..|+......|...++..|. ....+.++|.+|+||||||++|+.+|+..... .+...+++.|||+
T Consensus 255 e~l~~I~~~~y~eptpIqR~aip-l~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptRe 333 (673)
T KOG0333|consen 255 ELLSVIKKPGYKEPTPIQRQAIP-LGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRE 333 (673)
T ss_pred HHHHHHHhcCCCCCchHHHhhcc-chhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHH
Confidence 35567788888999887777665 66777779999999999999988887753211 1237899999999
Q ss_pred HHHHHHH---HHHHHhCCcccceEeeeeecccc---cCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-----------
Q 035699 386 AAMSVAA---RVSQEMGVKLGHEVGYSIRFEDC---TSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI----------- 447 (633)
Q Consensus 386 aA~qva~---rva~e~g~~vg~~VGy~ir~e~~---~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI----------- 447 (633)
||.||.. .+++.+|+++-..|| ...++.. .+.++.|+|+|||+|++.|.+.- -|.++.+||
T Consensus 334 LaqqIeeEt~kf~~~lg~r~vsvig-g~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmg 412 (673)
T KOG0333|consen 334 LAQQIEEETNKFGKPLGIRTVSVIG-GLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMG 412 (673)
T ss_pred HHHHHHHHHHHhcccccceEEEEec-ccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhccc
Confidence 9999854 233333444333444 3344443 36789999999999999986543 578888888
Q ss_pred ------eecccC------C------------------C--ccEEEeecccC--HHhHh-hhhCCCCEEEeC--Ceeee-E
Q 035699 448 ------DLINYR------P------------------D--LKLLISSATLD--AENFS-DYFGSAPIFKIP--RRRYH-V 489 (633)
Q Consensus 448 ------di~~~r------p------------------d--lklil~SAT~~--~~~~s-~~f~~~pii~i~--gr~~p-v 489 (633)
+|+... | . .+.++|||||. ++.++ .||.++.+++|. |+..| +
T Consensus 413 fE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rv 492 (673)
T KOG0333|consen 413 FEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRV 492 (673)
T ss_pred ccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccch
Confidence 111111 1 1 47899999994 46665 588777777764 34333 3
Q ss_pred EEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHH
Q 035699 490 ELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKI 569 (633)
Q Consensus 490 ~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i 569 (633)
++.....++... +..|..++.+....+||||+|+.+.|+++++.|.+. ++.++.|||+-+|++|..+
T Consensus 493 eQ~v~m~~ed~k----~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~---------g~~~~tlHg~k~qeQRe~a 559 (673)
T KOG0333|consen 493 EQKVEMVSEDEK----RKKLIEILESNFDPPIIIFVNTKKGADALAKILEKA---------GYKVTTLHGGKSQEQRENA 559 (673)
T ss_pred heEEEEecchHH----HHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhc---------cceEEEeeCCccHHHHHHH
Confidence 444444444433 445556665555678999999999999999999985 7999999999999999999
Q ss_pred hCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCcccc-ccCCCCce
Q 035699 570 FEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVKS-YNPKTGME 617 (633)
Q Consensus 570 ~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~~-yd~~~g~~ 617 (633)
++.|+.|...|+||||||+||||||+|.+|||+++.|... |-|+.|.+
T Consensus 560 L~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRT 608 (673)
T KOG0333|consen 560 LADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRT 608 (673)
T ss_pred HHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccc
Confidence 9999999999999999999999999999999999999865 98887763
No 24
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9e-34 Score=283.57 Aligned_cols=287 Identities=15% Similarity=0.216 Sum_probs=216.7
Q ss_pred HHHHHHHHHHccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccC--CeeeecchhHHHHHHHHHHH
Q 035699 317 SALEMLQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQ--GKIGCTQLRRVAAMSVAARV 394 (633)
Q Consensus 317 ~~~~~l~~~r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~--gkilitqPrR~aA~qva~rv 394 (633)
..+..+..+--.-|...+|.+|++ |..+++||++|..|+|||..|..-++...-... .+++|+.|||+||.|+-+ +
T Consensus 37 dlLrgiY~yGfekPS~IQqrAi~~-IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~-v 114 (400)
T KOG0328|consen 37 DLLRGIYAYGFEKPSAIQQRAIPQ-ILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQK-V 114 (400)
T ss_pred HHHHHHHHhccCCchHHHhhhhhh-hhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHH-H
Confidence 345556565666788777777665 555666999999999999887666554432222 289999999999999876 3
Q ss_pred HHHhCCcccceEeeeeecc----c--ccCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-----------------eec
Q 035699 395 SQEMGVKLGHEVGYSIRFE----D--CTSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-----------------DLI 450 (633)
Q Consensus 395 a~e~g~~vg~~VGy~ir~e----~--~~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-----------------di~ 450 (633)
..-+|...+..+--++++. + ....+.+++.+|||++++++.... .-..+.++| ||.
T Consensus 115 i~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiy 194 (400)
T KOG0328|consen 115 ILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIY 194 (400)
T ss_pred HHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHH
Confidence 3444444433332223222 2 123568999999999999997655 567788888 555
Q ss_pred ccCC-CccEEEeecccCHHhH--hh-hhCCCCEEEeCCeeee---EEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEE
Q 035699 451 NYRP-DLKLLISSATLDAENF--SD-YFGSAPIFKIPRRRYH---VELFYTKAPEADYIEAAIVTALQIHVNEPIGDILV 523 (633)
Q Consensus 451 ~~rp-dlklil~SAT~~~~~~--s~-~f~~~pii~i~gr~~p---v~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLV 523 (633)
+..| +.|++++|||++.+.+ .. |..++.-+.+..-..| ++++|......+| +..+++.++.+....+++|
T Consensus 195 r~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~Eew---KfdtLcdLYd~LtItQavI 271 (400)
T KOG0328|consen 195 RYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEW---KFDTLCDLYDTLTITQAVI 271 (400)
T ss_pred HhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhh---hHhHHHHHhhhhehheEEE
Confidence 5544 8999999999965433 34 4444444444322222 5677776555554 4678888888777789999
Q ss_pred EcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCC
Q 035699 524 FLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPG 603 (633)
Q Consensus 524 Fl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G 603 (633)
||||+..|+|+.+.|.+. ++.|.++||+|++++|.+++..|+.|..+|||+|||.+||||+|.|++|||++
T Consensus 272 FcnTk~kVdwLtekm~~~---------nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYD 342 (400)
T KOG0328|consen 272 FCNTKRKVDWLTEKMREA---------NFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYD 342 (400)
T ss_pred EecccchhhHHHHHHHhh---------CceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecC
Confidence 999999999999999885 89999999999999999999999999999999999999999999999999999
Q ss_pred CCcccc-ccCCCCce
Q 035699 604 FAKVKS-YNPKTGME 617 (633)
Q Consensus 604 ~~k~~~-yd~~~g~~ 617 (633)
+|.... |.|+.|.+
T Consensus 343 LP~nre~YIHRIGRS 357 (400)
T KOG0328|consen 343 LPNNRELYIHRIGRS 357 (400)
T ss_pred CCccHHHHhhhhccc
Confidence 998754 99988764
No 25
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=4.7e-33 Score=318.40 Aligned_cols=276 Identities=17% Similarity=0.162 Sum_probs=208.5
Q ss_pred cCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhcccc--CCeeeecchhHHHHHHHHHHHHHHhCCcccce
Q 035699 328 TLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTK--QGKIGCTQLRRVAAMSVAARVSQEMGVKLGHE 405 (633)
Q Consensus 328 ~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~--~gkilitqPrR~aA~qva~rva~e~g~~vg~~ 405 (633)
-...+++|.++++.+..++++|++||||||||+++.+++++..... ..+++|++|||+||.|++..+....+...+..
T Consensus 26 ~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~ 105 (629)
T PRK11634 26 YEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVN 105 (629)
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCce
Confidence 3457788999999999999999999999999999998887764332 23899999999999999887766543322333
Q ss_pred Eeeeeeccc------ccCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eecc----------------c-CCCccEEE
Q 035699 406 VGYSIRFED------CTSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLIN----------------Y-RPDLKLLI 460 (633)
Q Consensus 406 VGy~ir~e~------~~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~~----------------~-rpdlklil 460 (633)
+.....+.+ ....+++|+|+|||+|++++.... .|+++++|| |.++ . .+..++++
T Consensus 106 v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~~~q~ll 185 (629)
T PRK11634 106 VVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185 (629)
T ss_pred EEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHHHHHHHhCCCCCeEEE
Confidence 322222111 123568999999999999998766 799999988 3322 2 24678999
Q ss_pred eecccCH--HhHh-hhhCCCCEEEeCCee---eeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHH
Q 035699 461 SSATLDA--ENFS-DYFGSAPIFKIPRRR---YHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETA 534 (633)
Q Consensus 461 ~SAT~~~--~~~s-~~f~~~pii~i~gr~---~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l 534 (633)
||||++. ..+. .|+.++..+.+.... ..+...|......+.. ..+..++.......+||||+|+..++.+
T Consensus 186 fSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~----~~L~~~L~~~~~~~~IVF~~tk~~a~~l 261 (629)
T PRK11634 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKN----EALVRFLEAEDFDAAIIFVRTKNATLEV 261 (629)
T ss_pred EEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHH----HHHHHHHHhcCCCCEEEEeccHHHHHHH
Confidence 9999953 3344 466666666554332 1234444443333322 3344444455567899999999999999
Q ss_pred HHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccc-cccCC
Q 035699 535 EEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVK-SYNPK 613 (633)
Q Consensus 535 ~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~-~yd~~ 613 (633)
++.|... ++.+.++||+|++.+|..+++.|+.|..+||||||++++|||||+|++|||+++|... .|-++
T Consensus 262 ~~~L~~~---------g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqR 332 (629)
T PRK11634 262 AEALERN---------GYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHR 332 (629)
T ss_pred HHHHHhC---------CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHH
Confidence 9999874 7899999999999999999999999999999999999999999999999999999874 58777
Q ss_pred CCc
Q 035699 614 TGM 616 (633)
Q Consensus 614 ~g~ 616 (633)
.|.
T Consensus 333 iGR 335 (629)
T PRK11634 333 IGR 335 (629)
T ss_pred hcc
Confidence 665
No 26
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=2.7e-32 Score=307.00 Aligned_cols=274 Identities=17% Similarity=0.160 Sum_probs=200.4
Q ss_pred CChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccc---------cCCeeeecchhHHHHHHHHHHHHHHhCC
Q 035699 330 PIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYT---------KQGKIGCTQLRRVAAMSVAARVSQEMGV 400 (633)
Q Consensus 330 Pi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~---------~~gkilitqPrR~aA~qva~rva~e~g~ 400 (633)
-.+++|.+.++++.++++++++||||||||.++.++++..... .+..++|+.|||+||.|+...+. .++.
T Consensus 143 ~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~-~l~~ 221 (518)
T PLN00206 143 FPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAK-VLGK 221 (518)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHH-HHhC
Confidence 4567888888999999999999999999999988887654221 22389999999999999877543 3433
Q ss_pred cccceEeeeeeccc------ccCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eecc----------------cCCCc
Q 035699 401 KLGHEVGYSIRFED------CTSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLIN----------------YRPDL 456 (633)
Q Consensus 401 ~vg~~VGy~ir~e~------~~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~~----------------~rpdl 456 (633)
.++..+...+.+.. ....+++|+|+|||+|++++.... .|+++.+|| |.++ ..++.
T Consensus 222 ~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~~~ 301 (518)
T PLN00206 222 GLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALSQP 301 (518)
T ss_pred CCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhCCCC
Confidence 33322222222221 123568999999999999987655 789999988 4332 33667
Q ss_pred cEEEeecccC--HHhHhhhhCCCCE-EEeCCee---eeEEEEEEcCCchhHHHHHHHHHHHHHhcC--CCCCEEEEcCcH
Q 035699 457 KLLISSATLD--AENFSDYFGSAPI-FKIPRRR---YHVELFYTKAPEADYIEAAIVTALQIHVNE--PIGDILVFLTGQ 528 (633)
Q Consensus 457 klil~SAT~~--~~~~s~~f~~~pi-i~i~gr~---~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~--~~g~iLVFl~t~ 528 (633)
++++||||+. .+.+...+...++ +.+.... ..+...+......+.. ..++.++... ..+++||||+++
T Consensus 302 q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~----~~l~~~l~~~~~~~~~~iVFv~s~ 377 (518)
T PLN00206 302 QVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKK----QKLFDILKSKQHFKPPAVVFVSSR 377 (518)
T ss_pred cEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHH----HHHHHHHHhhcccCCCEEEEcCCc
Confidence 9999999994 4667766655554 3332211 1233443333332222 2233333322 236899999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccc
Q 035699 529 DQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVK 608 (633)
Q Consensus 529 ~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~ 608 (633)
..++.+++.|... .++.+..+||+|++.+|..+++.|+.|..+|||||++++||||||+|++|||+|+|...
T Consensus 378 ~~a~~l~~~L~~~--------~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~ 449 (518)
T PLN00206 378 LGADLLANAITVV--------TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTI 449 (518)
T ss_pred hhHHHHHHHHhhc--------cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCH
Confidence 9999999999763 26889999999999999999999999999999999999999999999999999999874
Q ss_pred -cccCCCCc
Q 035699 609 -SYNPKTGM 616 (633)
Q Consensus 609 -~yd~~~g~ 616 (633)
.|-++.|.
T Consensus 450 ~~yihRiGR 458 (518)
T PLN00206 450 KEYIHQIGR 458 (518)
T ss_pred HHHHHhccc
Confidence 58887765
No 27
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2e-32 Score=310.84 Aligned_cols=273 Identities=17% Similarity=0.197 Sum_probs=202.6
Q ss_pred CChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhcccc---------CCeeeecchhHHHHHHHHHHHHHHhCC
Q 035699 330 PIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTK---------QGKIGCTQLRRVAAMSVAARVSQEMGV 400 (633)
Q Consensus 330 Pi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~---------~gkilitqPrR~aA~qva~rva~e~g~ 400 (633)
-.+++|...|+.+.+++++|++||||||||+++.+++++..... ..+++|+.|||+||.|++..+ ..++.
T Consensus 31 ~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~-~~l~~ 109 (572)
T PRK04537 31 RCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDA-VKFGA 109 (572)
T ss_pred CCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHH-HHHhc
Confidence 45678888889999999999999999999999888877653211 238999999999999998865 44444
Q ss_pred cccceEeeeeeccc------ccCCCCcEEEeCchHHHHHHhcCC--CCCCceeee-eecc----------------cCC-
Q 035699 401 KLGHEVGYSIRFED------CTSDKTVLKYMTDGMLLREIVLEP--SLESYSVLI-DLIN----------------YRP- 454 (633)
Q Consensus 401 ~vg~~VGy~ir~e~------~~s~~t~Iiv~TpGrLL~~l~~~~--~L~~~s~vI-di~~----------------~rp- 454 (633)
..+..++....+.+ .....++|+|+|||+|++++.... .|..+++|| |.++ ..|
T Consensus 110 ~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~ 189 (572)
T PRK04537 110 DLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPE 189 (572)
T ss_pred cCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHHHHHHhccc
Confidence 44444443333222 123467899999999999987653 678888888 4332 223
Q ss_pred --CccEEEeecccCHH--h-HhhhhCCCCEEEeCCeee---eEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcC
Q 035699 455 --DLKLLISSATLDAE--N-FSDYFGSAPIFKIPRRRY---HVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLT 526 (633)
Q Consensus 455 --dlklil~SAT~~~~--~-~s~~f~~~pii~i~gr~~---pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~ 526 (633)
+.++++||||++.. . ...++.++..+.+..... .+...+...... ..+..++.++.....+++||||+
T Consensus 190 ~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~----~k~~~L~~ll~~~~~~k~LVF~n 265 (572)
T PRK04537 190 RGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADE----EKQTLLLGLLSRSEGARTMVFVN 265 (572)
T ss_pred ccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHH----HHHHHHHHHHhcccCCcEEEEeC
Confidence 56899999999542 2 334555443443332211 123333332222 23344555555556679999999
Q ss_pred cHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCc
Q 035699 527 GQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAK 606 (633)
Q Consensus 527 t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k 606 (633)
|+..++.+++.|... ++.+..+||+|++.+|..+++.|..|..+||||||++++|||||+|++|||+++|.
T Consensus 266 t~~~ae~l~~~L~~~---------g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~ 336 (572)
T PRK04537 266 TKAFVERVARTLERH---------GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPF 336 (572)
T ss_pred CHHHHHHHHHHHHHc---------CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCC
Confidence 999999999999874 68899999999999999999999999999999999999999999999999999997
Q ss_pred cc-cccCCCCc
Q 035699 607 VK-SYNPKTGM 616 (633)
Q Consensus 607 ~~-~yd~~~g~ 616 (633)
.. .|-++.|.
T Consensus 337 s~~~yvqRiGR 347 (572)
T PRK04537 337 DAEDYVHRIGR 347 (572)
T ss_pred CHHHHhhhhcc
Confidence 64 58888775
No 28
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2.9e-32 Score=308.29 Aligned_cols=275 Identities=17% Similarity=0.155 Sum_probs=196.1
Q ss_pred CChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccc-------cCCeeeecchhHHHHHHHHHHHHHHhCCcc
Q 035699 330 PIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYT-------KQGKIGCTQLRRVAAMSVAARVSQEMGVKL 402 (633)
Q Consensus 330 Pi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~-------~~gkilitqPrR~aA~qva~rva~e~g~~v 402 (633)
..+++|.+.++.+.+++++|++||||||||+++.+|++..... .+..++|+.|||+||.|+...+.. ++...
T Consensus 152 ~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~-~~~~~ 230 (545)
T PTZ00110 152 EPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNK-FGASS 230 (545)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHH-Hhccc
Confidence 4567888888999999999999999999999877776543221 122789999999999999875544 43333
Q ss_pred cceEeeeeeccc------ccCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eecc-----------------cCCCcc
Q 035699 403 GHEVGYSIRFED------CTSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLIN-----------------YRPDLK 457 (633)
Q Consensus 403 g~~VGy~ir~e~------~~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~~-----------------~rpdlk 457 (633)
+..+.....+.. ....+++|+|+|||+|++++.... .|..+++|| |.++ .+|+.+
T Consensus 231 ~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q 310 (545)
T PTZ00110 231 KIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 310 (545)
T ss_pred CccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCe
Confidence 322221111111 113468999999999999998765 789999888 4332 357889
Q ss_pred EEEeecccCH--HhHhh-hhCCCCE-EEeCCee----eeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHH
Q 035699 458 LLISSATLDA--ENFSD-YFGSAPI-FKIPRRR----YHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQD 529 (633)
Q Consensus 458 lil~SAT~~~--~~~s~-~f~~~pi-i~i~gr~----~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~ 529 (633)
+++||||+.. ..+.. ++...|+ +.+.... ..+...+........... +..++..+.. ..+++||||+++.
T Consensus 311 ~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~-L~~ll~~~~~-~~~k~LIF~~t~~ 388 (545)
T PTZ00110 311 TLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGK-LKMLLQRIMR-DGDKILIFVETKK 388 (545)
T ss_pred EEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHH-HHHHHHHhcc-cCCeEEEEecChH
Confidence 9999999943 45554 4444444 3322111 122222222222222221 2222222211 4579999999999
Q ss_pred HHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccc-
Q 035699 530 QFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVK- 608 (633)
Q Consensus 530 eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~- 608 (633)
.|+.++..|... ++.+..+||+|++.+|..+++.|+.|..+||||||+++||||||+|++|||+++|...
T Consensus 389 ~a~~l~~~L~~~---------g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~ 459 (545)
T PTZ00110 389 GADFLTKELRLD---------GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIE 459 (545)
T ss_pred HHHHHHHHHHHc---------CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHH
Confidence 999999999763 7889999999999999999999999999999999999999999999999999999875
Q ss_pred cccCCCCc
Q 035699 609 SYNPKTGM 616 (633)
Q Consensus 609 ~yd~~~g~ 616 (633)
.|-++.|.
T Consensus 460 ~yvqRiGR 467 (545)
T PTZ00110 460 DYVHRIGR 467 (545)
T ss_pred HHHHHhcc
Confidence 48887664
No 29
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=8e-32 Score=296.85 Aligned_cols=277 Identities=18% Similarity=0.240 Sum_probs=202.1
Q ss_pred CCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccc----c--CCeeeecchhHHHHHHHHHHHHHH---hC
Q 035699 329 LPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYT----K--QGKIGCTQLRRVAAMSVAARVSQE---MG 399 (633)
Q Consensus 329 LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~----~--~gkilitqPrR~aA~qva~rva~e---~g 399 (633)
-..+++|.+.++++.++++++++||||||||+++..+++..... . ..+++|+.||++||.|++..+... ++
T Consensus 22 ~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~ 101 (434)
T PRK11192 22 TRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAKHTH 101 (434)
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHccCC
Confidence 44568888889999999999999999999999987777654321 1 238999999999999998765443 34
Q ss_pred CcccceEeeeee--cccccCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eeccc-----------------CCCccE
Q 035699 400 VKLGHEVGYSIR--FEDCTSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLINY-----------------RPDLKL 458 (633)
Q Consensus 400 ~~vg~~VGy~ir--~e~~~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~~~-----------------rpdlkl 458 (633)
..++..+|.... .......+++|+|+|||+|++++.... .+.++.+|| |.++. +...++
T Consensus 102 ~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~~~~q~ 181 (434)
T PRK11192 102 LDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQT 181 (434)
T ss_pred cEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhCccccEE
Confidence 333333331110 011123567899999999999988766 688899888 54431 224578
Q ss_pred EEeecccCH---HhHhhhhCCCCE-EEeCCe---eeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHH
Q 035699 459 LISSATLDA---ENFSDYFGSAPI-FKIPRR---RYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQF 531 (633)
Q Consensus 459 il~SAT~~~---~~~s~~f~~~pi-i~i~gr---~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~ei 531 (633)
++||||++. ..|...+...|+ +.+... ...+..++....... .....+..++.....+++||||+++..+
T Consensus 182 ~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~---~k~~~l~~l~~~~~~~~~lVF~~s~~~~ 258 (434)
T PRK11192 182 LLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLE---HKTALLCHLLKQPEVTRSIVFVRTRERV 258 (434)
T ss_pred EEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHH---HHHHHHHHHHhcCCCCeEEEEeCChHHH
Confidence 999999953 455555544443 333221 112334444333222 2333444555444568999999999999
Q ss_pred HHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccc-cc
Q 035699 532 ETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVK-SY 610 (633)
Q Consensus 532 e~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~-~y 610 (633)
+.+++.|... ++.+..+||+|++.+|..++..|+.|..+||||||++++|||||+|++|||+++|... .|
T Consensus 259 ~~l~~~L~~~---------~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~y 329 (434)
T PRK11192 259 HELAGWLRKA---------GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTY 329 (434)
T ss_pred HHHHHHHHhC---------CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHH
Confidence 9999999873 7889999999999999999999999999999999999999999999999999999864 58
Q ss_pred cCCCCce
Q 035699 611 NPKTGME 617 (633)
Q Consensus 611 d~~~g~~ 617 (633)
-++.|..
T Consensus 330 iqr~GR~ 336 (434)
T PRK11192 330 LHRIGRT 336 (434)
T ss_pred hhccccc
Confidence 8877653
No 30
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=7.9e-32 Score=298.94 Aligned_cols=274 Identities=19% Similarity=0.187 Sum_probs=200.6
Q ss_pred CChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhcccc--------CCeeeecchhHHHHHHHHHHHHHHh---
Q 035699 330 PIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTK--------QGKIGCTQLRRVAAMSVAARVSQEM--- 398 (633)
Q Consensus 330 Pi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~--------~gkilitqPrR~aA~qva~rva~e~--- 398 (633)
-.+++|.++++.+.+++++|++||||||||.++.+++++..... ..+++|++|||+||.|+...+....
T Consensus 23 ~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~ 102 (456)
T PRK10590 23 EPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYL 102 (456)
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHHhccC
Confidence 45678888889999999999999999999999888877653221 1179999999999999988776543
Q ss_pred CCcccceEe-eeeecc-cccCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eecc-----------------cCCCcc
Q 035699 399 GVKLGHEVG-YSIRFE-DCTSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLIN-----------------YRPDLK 457 (633)
Q Consensus 399 g~~vg~~VG-y~ir~e-~~~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~~-----------------~rpdlk 457 (633)
+......+| ...... .....+++|+|||||+|++++.... .|+++.+|| |.++ ..++.+
T Consensus 103 ~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~~~i~~il~~l~~~~q 182 (456)
T PRK10590 103 NIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQ 182 (456)
T ss_pred CCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccHHHHHHHHHhCCccCe
Confidence 222211122 111000 1123568999999999999987665 799999998 4433 224568
Q ss_pred EEEeecccCH--HhHh-hhhCCCCEEEeCCee---eeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHH
Q 035699 458 LLISSATLDA--ENFS-DYFGSAPIFKIPRRR---YHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQF 531 (633)
Q Consensus 458 lil~SAT~~~--~~~s-~~f~~~pii~i~gr~---~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~ei 531 (633)
+++||||+.. ..+. .++.++..+.+.... ..+..++...+.... ...+..++......++||||+++..+
T Consensus 183 ~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k----~~~l~~l~~~~~~~~~lVF~~t~~~~ 258 (456)
T PRK10590 183 NLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRK----RELLSQMIGKGNWQQVLVFTRTKHGA 258 (456)
T ss_pred EEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHH----HHHHHHHHHcCCCCcEEEEcCcHHHH
Confidence 9999999954 4444 455444444443221 123334433332221 22333344444557899999999999
Q ss_pred HHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccc-cc
Q 035699 532 ETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVK-SY 610 (633)
Q Consensus 532 e~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~-~y 610 (633)
+.+++.|... ++.+..+||+|++.+|..+++.|..|..+|||||+++++|||||+|++|||+++|... .|
T Consensus 259 ~~l~~~L~~~---------g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~y 329 (456)
T PRK10590 259 NHLAEQLNKD---------GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDY 329 (456)
T ss_pred HHHHHHHHHC---------CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHh
Confidence 9999999774 6889999999999999999999999999999999999999999999999999999875 58
Q ss_pred cCCCCc
Q 035699 611 NPKTGM 616 (633)
Q Consensus 611 d~~~g~ 616 (633)
-++.|.
T Consensus 330 vqR~GR 335 (456)
T PRK10590 330 VHRIGR 335 (456)
T ss_pred hhhccc
Confidence 888765
No 31
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-33 Score=284.55 Aligned_cols=276 Identities=19% Similarity=0.249 Sum_probs=214.2
Q ss_pred ccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCC--eeeecchhHHHHHHHHHHHHHHh----CC
Q 035699 327 KTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQG--KIGCTQLRRVAAMSVAARVSQEM----GV 400 (633)
Q Consensus 327 ~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~g--kilitqPrR~aA~qva~rva~e~----g~ 400 (633)
-..|. |+|++.++...+++++++-|..|+|||.++..|+++..-.+.. +.+|+.|||++|.|+++ ++.++ |+
T Consensus 105 ~ekPS-PiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSq-vc~~lskh~~i 182 (459)
T KOG0326|consen 105 FEKPS-PIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQ-VCKELSKHLGI 182 (459)
T ss_pred cCCCC-CccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHH-HHHHHhcccCe
Confidence 34554 5677777888888999999999999999999999987554443 78999999999998754 44444 44
Q ss_pred cccceEe-eeeeccc-ccCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-----------------eecccCC-CccEE
Q 035699 401 KLGHEVG-YSIRFED-CTSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-----------------DLINYRP-DLKLL 459 (633)
Q Consensus 401 ~vg~~VG-y~ir~e~-~~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-----------------di~~~rp-dlkli 459 (633)
.+-..+| .+.+.+- +.++..+++|+||||+++++...- .|+++..+| .++.+.| +.|++
T Consensus 183 ~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~rQil 262 (459)
T KOG0326|consen 183 KVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKERQIL 262 (459)
T ss_pred EEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHHhCCccceee
Confidence 4433344 2333222 225678999999999999987765 899999888 3445555 67899
Q ss_pred EeecccC--HHhHh-hhhCCCCEEEeCCe--eeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHH
Q 035699 460 ISSATLD--AENFS-DYFGSAPIFKIPRR--RYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETA 534 (633)
Q Consensus 460 l~SAT~~--~~~~s-~~f~~~pii~i~gr--~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l 534 (633)
++|||+. +..|- +++.++-.++.-.. ..-|.++|....+...+. ++.+++. .....+.|||||+...||.+
T Consensus 263 lySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~qKvh-CLntLfs---kLqINQsIIFCNS~~rVELL 338 (459)
T KOG0326|consen 263 LYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQKVH-CLNTLFS---KLQINQSIIFCNSTNRVELL 338 (459)
T ss_pred EEecccchhHHHHHHHhccCcceeehhhhhhhcchhhheeeechhhhhh-hHHHHHH---HhcccceEEEeccchHhHHH
Confidence 9999994 45554 56666656665332 234788898877777665 3444432 22245799999999999999
Q ss_pred HHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccc-cccCC
Q 035699 535 EEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVK-SYNPK 613 (633)
Q Consensus 535 ~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~-~yd~~ 613 (633)
+..+.+. ++++..+|+.|.|+.|.++|+.|++|..+.|||||+.-|||||+.|++||||+|||.. +|=++
T Consensus 339 AkKITel---------GyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHR 409 (459)
T KOG0326|consen 339 AKKITEL---------GYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHR 409 (459)
T ss_pred HHHHHhc---------cchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHH
Confidence 9999885 8999999999999999999999999999999999999999999999999999999986 48888
Q ss_pred CCce
Q 035699 614 TGME 617 (633)
Q Consensus 614 ~g~~ 617 (633)
.|.+
T Consensus 410 IGRs 413 (459)
T KOG0326|consen 410 IGRS 413 (459)
T ss_pred ccCC
Confidence 7764
No 32
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.98 E-value=6.2e-33 Score=297.32 Aligned_cols=289 Identities=19% Similarity=0.169 Sum_probs=203.6
Q ss_pred HHHHHHHHHccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccc-------------cCCe--eeecch
Q 035699 318 ALEMLQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYT-------------KQGK--IGCTQL 382 (633)
Q Consensus 318 ~~~~l~~~r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~-------------~~gk--ilitqP 382 (633)
.+.+|...-=+-|+..+...++.++.+..+|+..|+||||||++|.+|+++.... +..+ .+|+.|
T Consensus 192 iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tP 271 (731)
T KOG0347|consen 192 ILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTP 271 (731)
T ss_pred HHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecC
Confidence 4566666666779988888888888888999999999999999999998873211 1114 789999
Q ss_pred hHHHHHHHHHHHHH---HhCCcccceEe-eeeecc-cccCCCCcEEEeCchHHHHHHhcCC----CCCCceeee------
Q 035699 383 RRVAAMSVAARVSQ---EMGVKLGHEVG-YSIRFE-DCTSDKTVLKYMTDGMLLREIVLEP----SLESYSVLI------ 447 (633)
Q Consensus 383 rR~aA~qva~rva~---e~g~~vg~~VG-y~ir~e-~~~s~~t~Iiv~TpGrLL~~l~~~~----~L~~~s~vI------ 447 (633)
||+||.||.+.+-. ..+..+-..+| .++.-. ...+..++|+|+|||||+.++..+. .+..++|+|
T Consensus 272 TRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDR 351 (731)
T KOG0347|consen 272 TRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADR 351 (731)
T ss_pred hHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHH
Confidence 99999999876543 33444433343 222222 2235689999999999999987654 578888988
Q ss_pred --------------eecc---cCCCccEEEeecccCHHhHhhhh-----------CCCCE------EEeCCeeeeEEEEE
Q 035699 448 --------------DLIN---YRPDLKLLISSATLDAENFSDYF-----------GSAPI------FKIPRRRYHVELFY 493 (633)
Q Consensus 448 --------------di~~---~rpdlklil~SAT~~~~~~s~~f-----------~~~pi------i~i~gr~~pv~~~y 493 (633)
.+++ ..++.|.++||||+....+...- .++++ +.+.|. |.-+-.
T Consensus 352 mvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~k--pkiiD~ 429 (731)
T KOG0347|consen 352 MVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGK--PKIIDL 429 (731)
T ss_pred HhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCC--CeeEec
Confidence 1222 24578999999999542221100 01111 111111 111111
Q ss_pred EcCC-chhHHHH-HH-------HHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHH
Q 035699 494 TKAP-EADYIEA-AI-------VTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTE 564 (633)
Q Consensus 494 ~~~~-~~~yl~~-~v-------~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~ 564 (633)
++.. .+..+.+ .+ ...++.+.+.-||..|||||+.+.|..++-.|... ++...+||++|.|.
T Consensus 430 t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L---------~i~p~~LHA~M~QK 500 (731)
T KOG0347|consen 430 TPQSATASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNL---------DIPPLPLHASMIQK 500 (731)
T ss_pred CcchhHHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhc---------CCCCchhhHHHHHH
Confidence 1110 0111100 00 00122234556899999999999999999999875 78889999999999
Q ss_pred HHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCcccc-ccCCCCce
Q 035699 565 LQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVKS-YNPKTGME 617 (633)
Q Consensus 565 ~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~~-yd~~~g~~ 617 (633)
+|.+.++.|......||||||||+||||||+|.|||++-.|+... |.||+|.+
T Consensus 501 qRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRT 554 (731)
T KOG0347|consen 501 QRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRT 554 (731)
T ss_pred HHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEeccccc
Confidence 999999999999999999999999999999999999999999864 99998874
No 33
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.98 E-value=1.3e-31 Score=286.38 Aligned_cols=291 Identities=18% Similarity=0.182 Sum_probs=215.7
Q ss_pred ccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccc-------cCC-eeeecchhHHHHHHHHHHHHHHh
Q 035699 327 KTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYT-------KQG-KIGCTQLRRVAAMSVAARVSQEM 398 (633)
Q Consensus 327 ~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~-------~~g-kilitqPrR~aA~qva~rva~e~ 398 (633)
+.-.+..+|.+.|+.|.++++++|.|+||||||.+..+|+.+.... ..| -++|+.|||+||+|++..+.+.+
T Consensus 156 ~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl 235 (708)
T KOG0348|consen 156 KISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLL 235 (708)
T ss_pred ccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHh
Confidence 3334556667777888889999999999999999988887665332 123 78999999999999999877777
Q ss_pred CCcccceEeeeeecccccC------CCCcEEEeCchHHHHHHhcCC--CCCCceeee--------------e---e---c
Q 035699 399 GVKLGHEVGYSIRFEDCTS------DKTVLKYMTDGMLLREIVLEP--SLESYSVLI--------------D---L---I 450 (633)
Q Consensus 399 g~~vg~~VGy~ir~e~~~s------~~t~Iiv~TpGrLL~~l~~~~--~L~~~s~vI--------------d---i---~ 450 (633)
...-...-|+-++++.+.+ .+.+|+|+|||||+++|.+.. .++.+..|| | | +
T Consensus 236 ~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v 315 (708)
T KOG0348|consen 236 KPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILKAV 315 (708)
T ss_pred cCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHHHHH
Confidence 6544444578888888765 468999999999999998876 578888888 1 1 1
Q ss_pred --------c---cCCCccEEEeecccC--HHhHhhhhCCCCE-EEe------------------CC---ee-------ee
Q 035699 451 --------N---YRPDLKLLISSATLD--AENFSDYFGSAPI-FKI------------------PR---RR-------YH 488 (633)
Q Consensus 451 --------~---~rpdlklil~SAT~~--~~~~s~~f~~~pi-i~i------------------~g---r~-------~p 488 (633)
. ..+.++-+|+|||++ +..++..-...|+ |.. +| .. -.
T Consensus 316 ~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeq 395 (708)
T KOG0348|consen 316 HSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQ 395 (708)
T ss_pred hhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHH
Confidence 0 112467899999993 5777765433332 221 11 00 01
Q ss_pred EEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcc-----cC----CCC----CceEEE
Q 035699 489 VELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRG-----LG----TKI----AELIIC 555 (633)
Q Consensus 489 v~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~-----l~----~~~----~~~~v~ 555 (633)
+.++|+..|-.-.+.++...+.+.....+.-++|||+.+++.|+.-|.++....-. .| .+. -+..++
T Consensus 396 L~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~ 475 (708)
T KOG0348|consen 396 LLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFY 475 (708)
T ss_pred hhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEE
Confidence 23556666655555555556666665555668999999999999999999765321 00 011 145789
Q ss_pred eccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCcccc-ccCCCCce
Q 035699 556 PIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVKS-YNPKTGME 617 (633)
Q Consensus 556 ~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~~-yd~~~g~~ 617 (633)
-|||+|.|++|.-+|+.|....+.||+|||||+||||+|+|++||.+.-|..+. |-++.|.+
T Consensus 476 rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRT 538 (708)
T KOG0348|consen 476 RLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRT 538 (708)
T ss_pred EecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhh
Confidence 999999999999999999999999999999999999999999999999998754 88887764
No 34
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.97 E-value=7.6e-31 Score=292.49 Aligned_cols=275 Identities=20% Similarity=0.206 Sum_probs=200.1
Q ss_pred cCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhcccc---------CCeeeecchhHHHHHHHHHHHHHHh
Q 035699 328 TLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTK---------QGKIGCTQLRRVAAMSVAARVSQEM 398 (633)
Q Consensus 328 ~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~---------~gkilitqPrR~aA~qva~rva~e~ 398 (633)
---.+++|.++++++.+++++|++|+||||||+++.++++...... ..+++|+.||++||.|++..+....
T Consensus 107 ~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~ 186 (475)
T PRK01297 107 FPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALT 186 (475)
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHHhh
Confidence 3447899999999999999999999999999999888877654322 2389999999999999988665432
Q ss_pred CCcccceEeeeeeccc-------ccCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eecc----------------c-
Q 035699 399 GVKLGHEVGYSIRFED-------CTSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLIN----------------Y- 452 (633)
Q Consensus 399 g~~vg~~VGy~ir~e~-------~~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~~----------------~- 452 (633)
...|..+.....+.+ .....++|+|+|||+|+.++.... .|.++++|| |.+| .
T Consensus 187 -~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~ 265 (475)
T PRK01297 187 -KYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQT 265 (475)
T ss_pred -ccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcccHHHHHHHHHhC
Confidence 222322321122111 113458999999999999887654 789999998 3322 1
Q ss_pred --CCCccEEEeecccCH--HhHhh-hhCCCCEEEeCCeee---eEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEE
Q 035699 453 --RPDLKLLISSATLDA--ENFSD-YFGSAPIFKIPRRRY---HVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVF 524 (633)
Q Consensus 453 --rpdlklil~SAT~~~--~~~s~-~f~~~pii~i~gr~~---pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVF 524 (633)
..+.+++++|||+.. ..+.. |+.++.++.+..... .+..++......+ ....+..++.....+++|||
T Consensus 266 ~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~----k~~~l~~ll~~~~~~~~IVF 341 (475)
T PRK01297 266 PRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSD----KYKLLYNLVTQNPWERVMVF 341 (475)
T ss_pred CCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchh----HHHHHHHHHHhcCCCeEEEE
Confidence 225689999999843 44444 444444444432211 1233333222222 22334444444555789999
Q ss_pred cCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCC
Q 035699 525 LTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGF 604 (633)
Q Consensus 525 l~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~ 604 (633)
|+++..++.+++.|... ++.+..+||+|++.+|..+++.|+.|..+||||||++++|||||+|++||++|+
T Consensus 342 ~~s~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~ 412 (475)
T PRK01297 342 ANRKDEVRRIEERLVKD---------GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTL 412 (475)
T ss_pred eCCHHHHHHHHHHHHHc---------CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCC
Confidence 99999999999999763 678999999999999999999999999999999999999999999999999999
Q ss_pred Ccc-ccccCCCCc
Q 035699 605 AKV-KSYNPKTGM 616 (633)
Q Consensus 605 ~k~-~~yd~~~g~ 616 (633)
|.. ..|-++.|.
T Consensus 413 P~s~~~y~Qr~GR 425 (475)
T PRK01297 413 PEDPDDYVHRIGR 425 (475)
T ss_pred CCCHHHHHHhhCc
Confidence 986 457776653
No 35
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.97 E-value=3.7e-32 Score=302.75 Aligned_cols=312 Identities=36% Similarity=0.550 Sum_probs=261.3
Q ss_pred HHHHHHHHHccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCC----eeeecchhHHHHHHHHHH
Q 035699 318 ALEMLQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQG----KIGCTQLRRVAAMSVAAR 393 (633)
Q Consensus 318 ~~~~l~~~r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~g----kilitqPrR~aA~qva~r 393 (633)
....+.++|..||+..+++.|++++.+|.+++|-|+||+||||++.++|+++....+. .+.++||||..|++++++
T Consensus 366 e~~~~~a~re~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaer 445 (1282)
T KOG0921|consen 366 ALDKITAQREELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAER 445 (1282)
T ss_pred chhhhhhhhhhCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHH
Confidence 4556778899999999999999999999999999999999999999999998554332 688999999999999999
Q ss_pred HHHHhCCcccceEeeeeecccccC-CCCcEEEeCchHHHHHHhcCCCCCCceeee-------------------eecccC
Q 035699 394 VSQEMGVKLGHEVGYSIRFEDCTS-DKTVLKYMTDGMLLREIVLEPSLESYSVLI-------------------DLINYR 453 (633)
Q Consensus 394 va~e~g~~vg~~VGy~ir~e~~~s-~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-------------------di~~~r 453 (633)
|+.+.+..+|..|||++||+.-++ +-..|.+||-|.|++++.+. |...+++| ++....
T Consensus 446 va~er~e~~g~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~e~g--lrg~sh~i~deiherdv~~dfll~~lr~m~~ty 523 (1282)
T KOG0921|consen 446 VANERGEEVGETCGYNVRFDSATPRPYGSIMFCTVGVLLRMMENG--LRGISHVIIDEIHERDVDTDFVLIVLREMISTY 523 (1282)
T ss_pred HHHhhHHhhcccccccccccccccccccceeeeccchhhhhhhhc--ccccccccchhhhhhccchHHHHHHHHhhhccc
Confidence 999999999999999999999885 55789999999999998654 55555555 445566
Q ss_pred CCccEEEeecccCHHhHhhhhCCCCEEEeCCeeeeEEEEEEc--------CC-----------------chh--------
Q 035699 454 PDLKLLISSATLDAENFSDYFGSAPIFKIPRRRYHVELFYTK--------AP-----------------EAD-------- 500 (633)
Q Consensus 454 pdlklil~SAT~~~~~~s~~f~~~pii~i~gr~~pv~~~y~~--------~~-----------------~~~-------- 500 (633)
++++++|||||+|.+.|..||.++|.+.++|+.+||..+|.. .| ..+
T Consensus 524 ~dl~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~ 603 (1282)
T KOG0921|consen 524 RDLRVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNI 603 (1282)
T ss_pred hhhhhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhccccccc
Confidence 899999999999999999999999999999999987544310 00 000
Q ss_pred -----HH----------------HHHHHHH-HHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEecc
Q 035699 501 -----YI----------------EAAIVTA-LQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIY 558 (633)
Q Consensus 501 -----yl----------------~~~v~~l-~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lH 558 (633)
|. ...+..+ ..|....-+|-||||+|++..+-.|+.+|..+... .......++|+|
T Consensus 604 ~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~f--g~~~~y~ilp~H 681 (1282)
T KOG0921|consen 604 LCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEF--GQANKYEILPLH 681 (1282)
T ss_pred ccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhh--ccchhcccccch
Confidence 00 0011111 12223334689999999999999999999876422 223467899999
Q ss_pred CCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccccccCCCCceeeeeeeccHHHHhhcC
Q 035699 559 GNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQRT 633 (633)
Q Consensus 559 g~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~~yd~~~g~~~l~~~~iSka~a~QR~ 633 (633)
+.++..++.++|++.|.|..|+|+.||||+++|||++|.||||.+..+..-|-..+.|..+-++|.|+-+..||+
T Consensus 682 sq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~ 756 (1282)
T KOG0921|consen 682 SQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRK 756 (1282)
T ss_pred hhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999985
No 36
>PTZ00424 helicase 45; Provisional
Probab=99.97 E-value=3e-30 Score=280.71 Aligned_cols=274 Identities=12% Similarity=0.181 Sum_probs=200.6
Q ss_pred CChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccc--cCCeeeecchhHHHHHHHHHHHHHHhCCcccceEe
Q 035699 330 PIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYT--KQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVG 407 (633)
Q Consensus 330 Pi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~--~~gkilitqPrR~aA~qva~rva~e~g~~vg~~VG 407 (633)
-.+++|...++++.++++++++||||||||+++.++++...-. .+.+++++.|+++||.|+...+.. ++...+..++
T Consensus 50 ~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~-~~~~~~~~~~ 128 (401)
T PTZ00424 50 KPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLA-LGDYLKVRCH 128 (401)
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHH-HhhhcCceEE
Confidence 3577888999999999999999999999999888777654322 233899999999999998765433 3322222222
Q ss_pred eeeec----cc--ccCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eecc-----------------cCCCccEEEee
Q 035699 408 YSIRF----ED--CTSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLIN-----------------YRPDLKLLISS 462 (633)
Q Consensus 408 y~ir~----e~--~~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~~-----------------~rpdlklil~S 462 (633)
....+ ++ ....+++|+|+|||+|++++.... .+.++++|| |.+| ..++.+++++|
T Consensus 129 ~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 208 (401)
T PTZ00424 129 ACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPPDVQVALFS 208 (401)
T ss_pred EEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHHHHHHHhhCCCCcEEEEEE
Confidence 11111 11 123457999999999999988765 689999988 5543 23578999999
Q ss_pred cccCH--HhHh-hhhCCCCEEEeCCee---eeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHH
Q 035699 463 ATLDA--ENFS-DYFGSAPIFKIPRRR---YHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEE 536 (633)
Q Consensus 463 AT~~~--~~~s-~~f~~~pii~i~gr~---~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~ 536 (633)
||+.. ..+. .|+.++..+.++... ..+..++...+...+. ...+..+......+++||||+|+..++.+++
T Consensus 209 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~ 285 (401)
T PTZ00424 209 ATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWK---FDTLCDLYETLTITQAIIYCNTRRKVDYLTK 285 (401)
T ss_pred ecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHH---HHHHHHHHHhcCCCeEEEEecCcHHHHHHHH
Confidence 99954 3333 344444334443322 1234445444433332 2334444555556789999999999999999
Q ss_pred HHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccc-cccCCCC
Q 035699 537 ILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVK-SYNPKTG 615 (633)
Q Consensus 537 ~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~-~yd~~~g 615 (633)
.|... ++.+..+||+|++.+|..+++.|+.|..+|||||+++++|||||+|++||++|+|... .|-.+.|
T Consensus 286 ~l~~~---------~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~G 356 (401)
T PTZ00424 286 KMHER---------DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIG 356 (401)
T ss_pred HHHHC---------CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeeccc
Confidence 99763 6789999999999999999999999999999999999999999999999999999864 5777766
Q ss_pred c
Q 035699 616 M 616 (633)
Q Consensus 616 ~ 616 (633)
.
T Consensus 357 R 357 (401)
T PTZ00424 357 R 357 (401)
T ss_pred c
Confidence 5
No 37
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=6.4e-31 Score=271.60 Aligned_cols=271 Identities=19% Similarity=0.245 Sum_probs=213.9
Q ss_pred HHHHHHHHHHHcC--CeEEEeccCCChhhchHHHHHHHhcccc--CCeeeecchhHHHHHHHHHHHHHHhCCcccceEee
Q 035699 333 PFREELLQAVSEY--PVLVIVGETGSGKTTQIPQYLYEAGYTK--QGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGY 408 (633)
Q Consensus 333 ~~q~~il~al~~~--~~vIi~a~TGSGKTt~lp~~Lle~~~~~--~gkilitqPrR~aA~qva~rva~e~g~~vg~~VGy 408 (633)
.+|+..|+.++.+ +++|.+++.|||||++|.+-++.+.-.. ..+++|+.|+|++|.|+.. |..+||...+....|
T Consensus 115 kIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~e-Vv~eMGKf~~ita~y 193 (477)
T KOG0332|consen 115 KIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGE-VVEEMGKFTELTASY 193 (477)
T ss_pred hHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHH-HHHHhcCceeeeEEE
Confidence 4456666777664 8899999999999999999888653222 2389999999999999987 778999888888889
Q ss_pred eeecccccC---CCCcEEEeCchHHHHHHhc-CC-CCCCceeee------------------eecccCC-CccEEEeecc
Q 035699 409 SIRFEDCTS---DKTVLKYMTDGMLLREIVL-EP-SLESYSVLI------------------DLINYRP-DLKLLISSAT 464 (633)
Q Consensus 409 ~ir~e~~~s---~~t~Iiv~TpGrLL~~l~~-~~-~L~~~s~vI------------------di~~~rp-dlklil~SAT 464 (633)
.+++..... -..+|+++|||-+++++.. .. ++..+.++| -|.+..| +.|+|+||||
T Consensus 194 air~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSAT 273 (477)
T KOG0332|consen 194 AIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSAT 273 (477)
T ss_pred EecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeech
Confidence 998773332 2358999999999999876 32 677777777 2334445 8899999999
Q ss_pred cCH--HhHh-hhhCCCCEEEeCC---eeeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHH
Q 035699 465 LDA--ENFS-DYFGSAPIFKIPR---RRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEIL 538 (633)
Q Consensus 465 ~~~--~~~s-~~f~~~pii~i~g---r~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L 538 (633)
++. ..|. .+.+++..+.+.. ..++|.++|..++..+. ++..++.++.....|+.||||.|+..+.|++..|
T Consensus 274 f~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~---K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m 350 (477)
T KOG0332|consen 274 FVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDD---KYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEM 350 (477)
T ss_pred hHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhh---HHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHH
Confidence 953 4555 3556776666543 24688999988775432 2334444555555699999999999999999999
Q ss_pred HHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCcc-------cccc
Q 035699 539 KQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKV-------KSYN 611 (633)
Q Consensus 539 ~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~-------~~yd 611 (633)
... +..|..+||+|.-.+|..+...|+.|..||||+|||.+||||++.|++|||+++|-. -+|-
T Consensus 351 ~~~---------Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYl 421 (477)
T KOG0332|consen 351 RAE---------GHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYL 421 (477)
T ss_pred Hhc---------CceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHH
Confidence 885 889999999999999999999999999999999999999999999999999999842 2566
Q ss_pred CCCCc
Q 035699 612 PKTGM 616 (633)
Q Consensus 612 ~~~g~ 616 (633)
||.|.
T Consensus 422 HRiGR 426 (477)
T KOG0332|consen 422 HRIGR 426 (477)
T ss_pred HHhcc
Confidence 66664
No 38
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.97 E-value=4.8e-30 Score=298.72 Aligned_cols=285 Identities=14% Similarity=0.090 Sum_probs=201.2
Q ss_pred ccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCC-eeeecchhHHHHHHHHHHHHHHhCCcccce
Q 035699 327 KTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQG-KIGCTQLRRVAAMSVAARVSQEMGVKLGHE 405 (633)
Q Consensus 327 ~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~g-kilitqPrR~aA~qva~rva~e~g~~vg~~ 405 (633)
.--..|++|.+.++++.+++++++++|||||||.++.+|+++......+ +++++.|||+||.|+...+.... ..+..
T Consensus 33 g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~--~~~i~ 110 (742)
T TIGR03817 33 GIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRELT--LRGVR 110 (742)
T ss_pred CCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhc--cCCeE
Confidence 3446889999999999999999999999999999999998877544333 89999999999999998776543 12222
Q ss_pred Eeeeee---ccc--ccCCCCcEEEeCchHHHHHHhcCC-----CCCCceeee-eeccc----------------------
Q 035699 406 VGYSIR---FED--CTSDKTVLKYMTDGMLLREIVLEP-----SLESYSVLI-DLINY---------------------- 452 (633)
Q Consensus 406 VGy~ir---~e~--~~s~~t~Iiv~TpGrLL~~l~~~~-----~L~~~s~vI-di~~~---------------------- 452 (633)
++...+ ... ....+++|+++||++|...++... .|+++++|| |.++.
T Consensus 111 v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~~~~~il~rL~ri~~~ 190 (742)
T TIGR03817 111 PATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFGSHVALVLRRLRRLCAR 190 (742)
T ss_pred EEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccHHHHHHHHHHHHHHHHh
Confidence 321111 111 113468999999999986554321 378899988 44331
Q ss_pred -CCCccEEEeeccc-CHHhHhhhhCCCCEEEeCC--eeee-EEEEEEcCC------------chhHHHHHHHHHHHHHhc
Q 035699 453 -RPDLKLLISSATL-DAENFSDYFGSAPIFKIPR--RRYH-VELFYTKAP------------EADYIEAAIVTALQIHVN 515 (633)
Q Consensus 453 -rpdlklil~SAT~-~~~~~s~~f~~~pii~i~g--r~~p-v~~~y~~~~------------~~~yl~~~v~~l~~i~~~ 515 (633)
..+.|++++|||+ |...+...+.+.|+..+.. ...+ ..+.+...+ ...........+..+...
T Consensus 191 ~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~ 270 (742)
T TIGR03817 191 YGASPVFVLASATTADPAAAASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVAE 270 (742)
T ss_pred cCCCCEEEEEecCCCCHHHHHHHHcCCCeEEECCCCCCcCceEEEEecCCccccccccccccccchHHHHHHHHHHHHHC
Confidence 1356899999999 5666665555555554432 1111 222211111 011122233334444332
Q ss_pred CCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCC
Q 035699 516 EPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDG 595 (633)
Q Consensus 516 ~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~ 595 (633)
..++||||+|+..++.++..|.......+. ..+..+.++||++++++|.++++.|+.|..+||||||++|+||||++
T Consensus 271 --~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~-~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~ 347 (742)
T TIGR03817 271 --GARTLTFVRSRRGAELVAAIARRLLGEVDP-DLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISG 347 (742)
T ss_pred --CCCEEEEcCCHHHHHHHHHHHHHHHHhhcc-ccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCccc
Confidence 478999999999999999999875322111 11457889999999999999999999999999999999999999999
Q ss_pred ccEEEeCCCCccc-cccCCCCc
Q 035699 596 IKYVIDPGFAKVK-SYNPKTGM 616 (633)
Q Consensus 596 V~~VID~G~~k~~-~yd~~~g~ 616 (633)
|++||++|+|... +|-++.|.
T Consensus 348 vd~VI~~~~P~s~~~y~qRiGR 369 (742)
T TIGR03817 348 LDAVVIAGFPGTRASLWQQAGR 369 (742)
T ss_pred ccEEEEeCCCCCHHHHHHhccc
Confidence 9999999999864 57776554
No 39
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=4.7e-31 Score=284.61 Aligned_cols=286 Identities=18% Similarity=0.153 Sum_probs=205.2
Q ss_pred HHHHHccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhcccc---------C---CeeeecchhHHHHHH
Q 035699 322 LQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTK---------Q---GKIGCTQLRRVAAMS 389 (633)
Q Consensus 322 l~~~r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~---------~---gkilitqPrR~aA~q 389 (633)
+......-|. |+|+-.++.|.++.+++++|+||||||.+|+.|+...++.. . +.++|+.|||+||.|
T Consensus 89 i~~~~~~~pt-pvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Q 167 (482)
T KOG0335|consen 89 IKRSGYTKPT-PVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQ 167 (482)
T ss_pred cccccccCCC-cceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhH
Confidence 4333445555 45555668899999999999999999999999887654432 1 279999999999999
Q ss_pred HHHHHHHHhCCc-ccceEeeeee---ccc-ccCCCCcEEEeCchHHHHHHhcCC-CCCCceeee--------eecccCC-
Q 035699 390 VAARVSQEMGVK-LGHEVGYSIR---FED-CTSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI--------DLINYRP- 454 (633)
Q Consensus 390 va~rva~e~g~~-vg~~VGy~ir---~e~-~~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI--------di~~~rp- 454 (633)
++.+..+..+.. +-..++|.-+ ... .+..+++|+|||||+|.+++.... .|+++.++| |.+.|-|
T Consensus 168 i~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~ 247 (482)
T KOG0335|consen 168 IYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQ 247 (482)
T ss_pred HHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhcccccc
Confidence 999877654322 1112223221 111 224679999999999999998766 899999988 3233322
Q ss_pred --------------CccEEEeecccC--HHhHhhhh-CCCCEEE-e--CC-eeeeEEEEEEcCCchhHHHHHHHHHHHHH
Q 035699 455 --------------DLKLLISSATLD--AENFSDYF-GSAPIFK-I--PR-RRYHVELFYTKAPEADYIEAAIVTALQIH 513 (633)
Q Consensus 455 --------------dlklil~SAT~~--~~~~s~~f-~~~pii~-i--~g-r~~pv~~~y~~~~~~~yl~~~v~~l~~i~ 513 (633)
..+.++||||++ ...+..+| .+.-++. | -| ...-+.+......+.+.....+..+....
T Consensus 248 Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~ 327 (482)
T KOG0335|consen 248 IRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDD 327 (482)
T ss_pred HHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecchhhHHHHHHHhhccc
Confidence 458999999994 45565554 3323222 2 12 22234444444444444333333332222
Q ss_pred hcCCCC-----CEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccc
Q 035699 514 VNEPIG-----DILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAE 588 (633)
Q Consensus 514 ~~~~~g-----~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAe 588 (633)
.....+ .+||||.|.+.+..+...|... ++++.+|||..++.+|...+..|+.|...||||||||+
T Consensus 328 ~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~---------~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~Vaa 398 (482)
T KOG0335|consen 328 GPPSDGEPKWEKTLVFVETKRGADELAAFLSSN---------GYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAA 398 (482)
T ss_pred CCcccCCcccceEEEEeeccchhhHHHHHHhcC---------CCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhh
Confidence 111234 7999999999999999999873 89999999999999999999999999999999999999
Q ss_pred cCCCCCCccEEEeCCCCcc-ccccCCCCce
Q 035699 589 TSLTIDGIKYVIDPGFAKV-KSYNPKTGME 617 (633)
Q Consensus 589 rGLdIp~V~~VID~G~~k~-~~yd~~~g~~ 617 (633)
||||||+|++|||+.+|.. ..|-|+.|.+
T Consensus 399 RGlDi~~V~hVInyDmP~d~d~YvHRIGRT 428 (482)
T KOG0335|consen 399 RGLDIPNVKHVINYDMPADIDDYVHRIGRT 428 (482)
T ss_pred cCCCCCCCceeEEeecCcchhhHHHhcccc
Confidence 9999999999999999987 4588887753
No 40
>PRK01172 ski2-like helicase; Provisional
Probab=99.96 E-value=2.5e-29 Score=291.45 Aligned_cols=289 Identities=19% Similarity=0.157 Sum_probs=207.2
Q ss_pred cCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccceEe
Q 035699 328 TLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVG 407 (633)
Q Consensus 328 ~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~VG 407 (633)
...++++|.++++.+.++++++++||||||||+++.+++++.. ..+++++++.|++++|.+++..+.... ..|..|+
T Consensus 20 ~~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l-~~~~k~v~i~P~raLa~q~~~~~~~l~--~~g~~v~ 96 (674)
T PRK01172 20 DFELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETF-LAGLKSIYIVPLRSLAMEKYEELSRLR--SLGMRVK 96 (674)
T ss_pred CCCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHH-HhCCcEEEEechHHHHHHHHHHHHHHh--hcCCeEE
Confidence 4568999999999999999999999999999999888887663 334588899999999999998876532 2344455
Q ss_pred eeeeccccc---CCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eeccc--------------------CCCccEEEee
Q 035699 408 YSIRFEDCT---SDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLINY--------------------RPDLKLLISS 462 (633)
Q Consensus 408 y~ir~e~~~---s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~~~--------------------rpdlklil~S 462 (633)
+.++..+.. -..++|+|+|||++..++.+.+ .+.++++|| |.+|. ++++++|++|
T Consensus 97 ~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~~~riI~lS 176 (674)
T PRK01172 97 ISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNPDARILALS 176 (674)
T ss_pred EEeCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcCcCCcEEEEe
Confidence 444322211 1357999999999998887777 589999988 55442 3567999999
Q ss_pred ccc-CHHhHhhhhCCCCEEEeCCeeeeEEEEEEcC-------CchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHH
Q 035699 463 ATL-DAENFSDYFGSAPIFKIPRRRYHVELFYTKA-------PEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETA 534 (633)
Q Consensus 463 AT~-~~~~~s~~f~~~pii~i~gr~~pv~~~y~~~-------~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l 534 (633)
||+ |+..++.|++ ++.+....+..|+.+..... ...... .....+.... ...+++||||||+..++.+
T Consensus 177 ATl~n~~~la~wl~-~~~~~~~~r~vpl~~~i~~~~~~~~~~~~~~~~-~~~~~i~~~~--~~~~~vLVF~~sr~~~~~~ 252 (674)
T PRK01172 177 ATVSNANELAQWLN-ASLIKSNFRPVPLKLGILYRKRLILDGYERSQV-DINSLIKETV--NDGGQVLVFVSSRKNAEDY 252 (674)
T ss_pred CccCCHHHHHHHhC-CCccCCCCCCCCeEEEEEecCeeeecccccccc-cHHHHHHHHH--hCCCcEEEEeccHHHHHHH
Confidence 999 8889999885 45555556666665332111 100000 0011111111 2468999999999999999
Q ss_pred HHHHHHhhcccCCC----------------CCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccE
Q 035699 535 EEILKQRTRGLGTK----------------IAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKY 598 (633)
Q Consensus 535 ~~~L~~~~~~l~~~----------------~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~ 598 (633)
+..|.........- .-...|..+||+|++++|..+++.|++|..+|||||+++++|+|+|+..+
T Consensus 253 a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~V 332 (674)
T PRK01172 253 AEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLV 332 (674)
T ss_pred HHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEE
Confidence 99997754221100 00124788999999999999999999999999999999999999999877
Q ss_pred EEeCCCCccccccCCCCceeeeeeeccHHHHhhcC
Q 035699 599 VIDPGFAKVKSYNPKTGMESLLVNPISKASANQRT 633 (633)
Q Consensus 599 VID~G~~k~~~yd~~~g~~~l~~~~iSka~a~QR~ 633 (633)
||+ |.+ .|+. .-..|+|.++..||+
T Consensus 333 II~-~~~---~~~~------~~~~~~s~~~~~Qm~ 357 (674)
T PRK01172 333 IVR-DIT---RYGN------GGIRYLSNMEIKQMI 357 (674)
T ss_pred EEc-Cce---EeCC------CCceeCCHHHHHHHh
Confidence 775 332 2332 123468888888873
No 41
>PRK02362 ski2-like helicase; Provisional
Probab=99.96 E-value=1.7e-28 Score=286.90 Aligned_cols=290 Identities=18% Similarity=0.187 Sum_probs=203.3
Q ss_pred CCChHHHHHHHHH-HHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHH--hCCcccce
Q 035699 329 LPIYPFREELLQA-VSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQE--MGVKLGHE 405 (633)
Q Consensus 329 LPi~~~q~~il~a-l~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e--~g~~vg~~ 405 (633)
--++++|.++++. +.++++++++||||||||.++..+++... ..+++++++.|+++||.+++..+... +|..++..
T Consensus 22 ~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l-~~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~ 100 (737)
T PRK02362 22 EELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAI-ARGGKALYIVPLRALASEKFEEFERFEELGVRVGIS 100 (737)
T ss_pred CcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHH-hcCCcEEEEeChHHHHHHHHHHHHHhhcCCCEEEEE
Confidence 3478889998887 88899999999999999999888877663 34569999999999999999988743 14443333
Q ss_pred EeeeeecccccCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eeccc--------------------CCCccEEEeec
Q 035699 406 VGYSIRFEDCTSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLINY--------------------RPDLKLLISSA 463 (633)
Q Consensus 406 VGy~ir~e~~~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~~~--------------------rpdlklil~SA 463 (633)
+|-... .......++|+||||+++..++.+.+ .+.+++++| |.+|. .++.|+|++||
T Consensus 101 tGd~~~-~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSA 179 (737)
T PRK02362 101 TGDYDS-RDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSA 179 (737)
T ss_pred eCCcCc-cccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcc
Confidence 331100 01112357899999999988877654 688999999 44432 35789999999
Q ss_pred cc-CHHhHhhhhCCCCEEEeCCeeeeEEEE--E------Ec----CCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHH
Q 035699 464 TL-DAENFSDYFGSAPIFKIPRRRYHVELF--Y------TK----APEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQ 530 (633)
Q Consensus 464 T~-~~~~~s~~f~~~pii~i~gr~~pv~~~--y------~~----~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~e 530 (633)
|+ |++.++.|++... +....+..|+... + .. .+..+. ...+..+...+. ..+++||||||+..
T Consensus 180 Tl~n~~~la~wl~~~~-~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~LVF~~sr~~ 255 (737)
T PRK02362 180 TIGNADELADWLDAEL-VDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSK-DDTLNLVLDTLE--EGGQCLVFVSSRRN 255 (737)
T ss_pred cCCCHHHHHHHhCCCc-ccCCCCCCCCeeeEecCCeeccccccccCCCccc-hHHHHHHHHHHH--cCCCeEEEEeCHHH
Confidence 99 7888999885332 2222222222211 1 00 000000 122333333332 45899999999999
Q ss_pred HHHHHHHHHHhhcc----------------c---CCC-C-------CceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEe
Q 035699 531 FETAEEILKQRTRG----------------L---GTK-I-------AELIICPIYGNLPTELQAKIFEPTPEGARKVVLA 583 (633)
Q Consensus 531 ie~l~~~L~~~~~~----------------l---~~~-~-------~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvA 583 (633)
++.++..|...... + ... . -...|..+||+|++.+|..+++.|+.|..+||||
T Consensus 256 ~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLva 335 (737)
T PRK02362 256 AEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISS 335 (737)
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEe
Confidence 99999998765321 0 000 0 0135889999999999999999999999999999
Q ss_pred CCccccCCCCCCccEEEeCCCCccccccCCCCceeeeeeeccHHHHhhcC
Q 035699 584 TNIAETSLTIDGIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQRT 633 (633)
Q Consensus 584 TdIAerGLdIp~V~~VID~G~~k~~~yd~~~g~~~l~~~~iSka~a~QR~ 633 (633)
|+++++|||+|++.+||+. ...||+..|+ .|+|.++..||.
T Consensus 336 T~tla~GvnlPa~~VVI~~----~~~yd~~~g~-----~~~s~~~y~Qm~ 376 (737)
T PRK02362 336 TPTLAAGLNLPARRVIIRD----YRRYDGGAGM-----QPIPVLEYHQMA 376 (737)
T ss_pred chhhhhhcCCCceEEEEec----ceeecCCCCc-----eeCCHHHHHHHh
Confidence 9999999999999999975 3357765554 467777777763
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.96 E-value=6e-28 Score=286.13 Aligned_cols=282 Identities=18% Similarity=0.138 Sum_probs=195.3
Q ss_pred ChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccc-------cCC-eeeecchhHHHHHHHHHHHHH------
Q 035699 331 IYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYT-------KQG-KIGCTQLRRVAAMSVAARVSQ------ 396 (633)
Q Consensus 331 i~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~-------~~g-kilitqPrR~aA~qva~rva~------ 396 (633)
.+++|.+.++.+.++++++|+||||||||.++.++++..... .++ +++++.|+|+||.++..++..
T Consensus 33 ~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~ 112 (876)
T PRK13767 33 FTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIR 112 (876)
T ss_pred CCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 677888888999999999999999999999988887754321 112 799999999999998775432
Q ss_pred ----HhCCcc-cceEeeeeeccc------ccCCCCcEEEeCchHHHHHHhcCC---CCCCceeee-eeccc---------
Q 035699 397 ----EMGVKL-GHEVGYSIRFED------CTSDKTVLKYMTDGMLLREIVLEP---SLESYSVLI-DLINY--------- 452 (633)
Q Consensus 397 ----e~g~~v-g~~VGy~ir~e~------~~s~~t~Iiv~TpGrLL~~l~~~~---~L~~~s~vI-di~~~--------- 452 (633)
.+|..+ +..|+...+... .....++|+|+|||+|..++.+.. .|.++.+|| |.+|.
T Consensus 113 ~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~RG~~ 192 (876)
T PRK13767 113 EIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRGVH 192 (876)
T ss_pred HHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccCccHHH
Confidence 224443 333332211111 012457999999999986664322 478899888 44331
Q ss_pred ------------CCCccEEEeeccc-CHHhHhhhhCCC-------CEEEeCCe---eeeEEEEEEc-----CCchhHHHH
Q 035699 453 ------------RPDLKLLISSATL-DAENFSDYFGSA-------PIFKIPRR---RYHVELFYTK-----APEADYIEA 504 (633)
Q Consensus 453 ------------rpdlklil~SAT~-~~~~~s~~f~~~-------pii~i~gr---~~pv~~~y~~-----~~~~~yl~~ 504 (633)
.+++++|++|||+ +.+.++.|+.+. ++..+.+. .+++.+.... .+.......
T Consensus 193 l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~p~~~l~~~~~~~~~~~ 272 (876)
T PRK13767 193 LSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVISPVDDLIHTPAEEISEA 272 (876)
T ss_pred HHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEeccCccccccccchhHHH
Confidence 1467899999999 667888877532 22222221 1222222110 011111122
Q ss_pred HHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeC
Q 035699 505 AIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLAT 584 (633)
Q Consensus 505 ~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvAT 584 (633)
....+..+.. ..+++||||||+..++.++..|...+.. ...+..+.++||+|++++|..+++.|++|..+|||||
T Consensus 273 l~~~L~~~i~--~~~~~LVF~nTr~~ae~la~~L~~~~~~---~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaT 347 (876)
T PRK13767 273 LYETLHELIK--EHRTTLIFTNTRSGAERVLYNLRKRFPE---EYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSS 347 (876)
T ss_pred HHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHhchh---hccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEEC
Confidence 2333333332 2478999999999999999999875311 1124679999999999999999999999999999999
Q ss_pred CccccCCCCCCccEEEeCCCCccc-cccCCCCce
Q 035699 585 NIAETSLTIDGIKYVIDPGFAKVK-SYNPKTGME 617 (633)
Q Consensus 585 dIAerGLdIp~V~~VID~G~~k~~-~yd~~~g~~ 617 (633)
+++++|||||+|++||++|.|+.. .|-.+.|..
T Consensus 348 s~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRa 381 (876)
T PRK13767 348 TSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRA 381 (876)
T ss_pred ChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccC
Confidence 999999999999999999999863 477766553
No 43
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=1.2e-28 Score=256.67 Aligned_cols=272 Identities=17% Similarity=0.184 Sum_probs=202.0
Q ss_pred HHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhcc-------ccCC-eeeecchhHHHHHHHHHHHHHHh--CCcc
Q 035699 333 PFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGY-------TKQG-KIGCTQLRRVAAMSVAARVSQEM--GVKL 402 (633)
Q Consensus 333 ~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~-------~~~g-kilitqPrR~aA~qva~rva~e~--g~~v 402 (633)
|+|.+..+.++.+++++.+|+||+|||.+++.+-+.... ..++ .++++.|||+||.++---+.++. |.+.
T Consensus 245 PIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ks 324 (629)
T KOG0336|consen 245 PIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKS 324 (629)
T ss_pred cchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcce
Confidence 556777888999999999999999999987765322111 1223 79999999999999876666553 3333
Q ss_pred cceEeeeeecccc--cCCCCcEEEeCchHHHHHHhcCC-CCCCceeee------------------eecccCCCccEEEe
Q 035699 403 GHEVGYSIRFEDC--TSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI------------------DLINYRPDLKLLIS 461 (633)
Q Consensus 403 g~~VGy~ir~e~~--~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI------------------di~~~rpdlklil~ 461 (633)
-+..|..-|.+.. ...+..|+++|||+|.+++..+. +|.++.++| -++..|||.++++.
T Consensus 325 vc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmT 404 (629)
T KOG0336|consen 325 VCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMT 404 (629)
T ss_pred EEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeee
Confidence 2223333333322 24678999999999999998887 899999999 12456899999999
Q ss_pred ecccC--HHhHhhhhCCCCEEEeCCe-----eeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHH
Q 035699 462 SATLD--AENFSDYFGSAPIFKIPRR-----RYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETA 534 (633)
Q Consensus 462 SAT~~--~~~~s~~f~~~pii~i~gr-----~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l 534 (633)
|||.. +.+++.-+...|++...|. ...|++.+......+++. .+..++.-+ .+..++||||...--++.|
T Consensus 405 SATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~-~~~~f~~~m--s~ndKvIiFv~~K~~AD~L 481 (629)
T KOG0336|consen 405 SATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLE-IVQFFVANM--SSNDKVIIFVSRKVMADHL 481 (629)
T ss_pred cccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHH-HHHHHHHhc--CCCceEEEEEechhhhhhc
Confidence 99994 4677754444455444453 245666665555555542 233333322 2347899999998887777
Q ss_pred HHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccc-cccCC
Q 035699 535 EEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVK-SYNPK 613 (633)
Q Consensus 535 ~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~-~yd~~ 613 (633)
..-|.- .++..-+|||+-.|..|..+++.|+.|..+||||||+|+||||+++|+||+|++||..- .|-|+
T Consensus 482 SSd~~l---------~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHR 552 (629)
T KOG0336|consen 482 SSDFCL---------KGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHR 552 (629)
T ss_pred cchhhh---------cccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHH
Confidence 666543 48899999999999999999999999999999999999999999999999999999874 48776
Q ss_pred CCc
Q 035699 614 TGM 616 (633)
Q Consensus 614 ~g~ 616 (633)
.|.
T Consensus 553 vGr 555 (629)
T KOG0336|consen 553 VGR 555 (629)
T ss_pred hcc
Confidence 654
No 44
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=7.1e-29 Score=263.95 Aligned_cols=272 Identities=20% Similarity=0.239 Sum_probs=198.3
Q ss_pred hHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhc-----cc-cCC-eeeecchhHHHHHHHHHHHHHHhCCcccc
Q 035699 332 YPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAG-----YT-KQG-KIGCTQLRRVAAMSVAARVSQEMGVKLGH 404 (633)
Q Consensus 332 ~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~-----~~-~~g-kilitqPrR~aA~qva~rva~e~g~~vg~ 404 (633)
+++|.++++...++.+|+.+|.||||||.+|..+++... +. ..| -.+|++|||++|.||.. .|+.+|..+|.
T Consensus 247 tpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~-eaKkf~K~ygl 325 (731)
T KOG0339|consen 247 TPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFS-EAKKFGKAYGL 325 (731)
T ss_pred CcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHH-HHHHhhhhccc
Confidence 455677788888888899999999999999887765332 11 233 56789999999999865 55555444443
Q ss_pred eE----eeeeeccc--ccCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-ee-----------------cccCCCccEE
Q 035699 405 EV----GYSIRFED--CTSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DL-----------------INYRPDLKLL 459 (633)
Q Consensus 405 ~V----Gy~ir~e~--~~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di-----------------~~~rpdlkli 459 (633)
.+ |-....+. ....++.|||||||||++++.-.. +|..++++| |. -+.+|+.|+|
T Consensus 326 ~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtl 405 (731)
T KOG0339|consen 326 RVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTL 405 (731)
T ss_pred eEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEE
Confidence 22 21111111 113679999999999999986655 899999999 22 2568999999
Q ss_pred Eeeccc--CHHhHhhhhCCCCEEEeCCe----eeeEEEE-EEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHH
Q 035699 460 ISSATL--DAENFSDYFGSAPIFKIPRR----RYHVELF-YTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFE 532 (633)
Q Consensus 460 l~SAT~--~~~~~s~~f~~~pii~i~gr----~~pv~~~-y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie 532 (633)
+||||+ .++++..-+...||-.+.|. ..-+.+. +........|...+..|..+ ...|++|||++-...++
T Consensus 406 lFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f---~S~gkvlifVTKk~~~e 482 (731)
T KOG0339|consen 406 LFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEF---SSEGKVLIFVTKKADAE 482 (731)
T ss_pred EeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhh---ccCCcEEEEEeccCCHH
Confidence 999999 45777776656666544431 1111111 12222233333333333332 34599999999999999
Q ss_pred HHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccc-ccc
Q 035699 533 TAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVK-SYN 611 (633)
Q Consensus 533 ~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~-~yd 611 (633)
.++..|.. .++.|..+||+|.|.+|.+++..|+.+...|++|||+|+||+||+++..|||+++-+.. .|.
T Consensus 483 ~i~a~Lkl---------k~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdtht 553 (731)
T KOG0339|consen 483 EIAANLKL---------KGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHT 553 (731)
T ss_pred HHHHHhcc---------ccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHH
Confidence 99999965 48999999999999999999999999999999999999999999999999999997763 466
Q ss_pred CCCCc
Q 035699 612 PKTGM 616 (633)
Q Consensus 612 ~~~g~ 616 (633)
++.|.
T Consensus 554 hrigr 558 (731)
T KOG0339|consen 554 HRIGR 558 (731)
T ss_pred HHhhh
Confidence 65543
No 45
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=4.8e-28 Score=257.84 Aligned_cols=287 Identities=17% Similarity=0.223 Sum_probs=205.7
Q ss_pred HHccCCChHHHHHHHHHHH---------cCCeEEEeccCCChhhchHHHHHHHhccccCC---eeeecchhHHHHHHHHH
Q 035699 325 ERKTLPIYPFREELLQAVS---------EYPVLVIVGETGSGKTTQIPQYLYEAGYTKQG---KIGCTQLRRVAAMSVAA 392 (633)
Q Consensus 325 ~r~~LPi~~~q~~il~al~---------~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~g---kilitqPrR~aA~qva~ 392 (633)
....--.+|+|..+++++. ...+|.|.||||||||.++.+|+......+.- +++|+.|+|+||.||+.
T Consensus 154 k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~ 233 (620)
T KOG0350|consen 154 KMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYD 233 (620)
T ss_pred HhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHH
Confidence 3455677888999999883 14578999999999999988888776544432 89999999999999998
Q ss_pred HHHHHhCCcccceEeeee-----eccccc--CC----CCcEEEeCchHHHHHHhcCC--CCCCceeee------------
Q 035699 393 RVSQEMGVKLGHEVGYSI-----RFEDCT--SD----KTVLKYMTDGMLLREIVLEP--SLESYSVLI------------ 447 (633)
Q Consensus 393 rva~e~g~~vg~~VGy~i-----r~e~~~--s~----~t~Iiv~TpGrLL~~l~~~~--~L~~~s~vI------------ 447 (633)
.+. .+....|..|+... ..+... +. +.+|+|+|||||.+|+.+.+ +|.++.++|
T Consensus 234 ~f~-~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsf 312 (620)
T KOG0350|consen 234 TFK-RLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSF 312 (620)
T ss_pred HHH-HhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHH
Confidence 654 44444555565322 222211 12 34899999999999998665 799999998
Q ss_pred ---------------------eecc-------------------cCCCccEEEeeccc--CHHhHhhhhCCCC-EEEeCC
Q 035699 448 ---------------------DLIN-------------------YRPDLKLLISSATL--DAENFSDYFGSAP-IFKIPR 484 (633)
Q Consensus 448 ---------------------di~~-------------------~rpdlklil~SAT~--~~~~~s~~f~~~p-ii~i~g 484 (633)
+|+. ..|.+..+++|||+ ++.++..+--+.| ++.+.+
T Consensus 313 Q~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~ 392 (620)
T KOG0350|consen 313 QEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSK 392 (620)
T ss_pred HHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeec
Confidence 1111 12345578899999 7888888765555 666643
Q ss_pred ---eeeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCC
Q 035699 485 ---RRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNL 561 (633)
Q Consensus 485 ---r~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l 561 (633)
.+|.+.......+..--..-....+.+++.......+|+|+++.+.+..++..|.-.+.. .++.+-.+.|++
T Consensus 393 ~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~-----~~~~~s~~t~~l 467 (620)
T KOG0350|consen 393 PLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCS-----DNFKVSEFTGQL 467 (620)
T ss_pred ccceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhcc-----ccchhhhhhhhh
Confidence 223221111100000000001223444444455678999999999999999999843322 356666789999
Q ss_pred CHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCcc-ccccCCCCce
Q 035699 562 PTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKV-KSYNPKTGME 617 (633)
Q Consensus 562 ~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~-~~yd~~~g~~ 617 (633)
....|.+.++.|..|...||||||+++||||+.+|+.|||++.|.. ..|.||.|.+
T Consensus 468 ~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRT 524 (620)
T KOG0350|consen 468 NGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRT 524 (620)
T ss_pred hHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhccc
Confidence 9999999999999999999999999999999999999999999975 6799998875
No 46
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=4.8e-27 Score=261.66 Aligned_cols=267 Identities=14% Similarity=0.126 Sum_probs=186.6
Q ss_pred ChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccceEeeee
Q 035699 331 IYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSI 410 (633)
Q Consensus 331 i~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~VGy~i 410 (633)
..++|.++++++.+++++++++|||||||+++..|++.. ++.++|+.|+++|+.+...++. .+|.......|...
T Consensus 12 ~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~----~~~~lVi~P~~~L~~dq~~~l~-~~gi~~~~l~~~~~ 86 (470)
T TIGR00614 12 FRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS----DGITLVISPLISLMEDQVLQLK-ASGIPATFLNSSQS 86 (470)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc----CCcEEEEecHHHHHHHHHHHHH-HcCCcEEEEeCCCC
Confidence 457899999999999999999999999999877776542 4578999999999998887764 35554332222111
Q ss_pred ec------ccccCCCCcEEEeCchHHHHHH--hcCC-CCCCceeee-eeccc---------------------CCCccEE
Q 035699 411 RF------EDCTSDKTVLKYMTDGMLLREI--VLEP-SLESYSVLI-DLINY---------------------RPDLKLL 459 (633)
Q Consensus 411 r~------e~~~s~~t~Iiv~TpGrLL~~l--~~~~-~L~~~s~vI-di~~~---------------------rpdlkli 459 (633)
.. ........+|+|+||+++.... .... .+.++++|| |.+|. .|+.+++
T Consensus 87 ~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l 166 (470)
T TIGR00614 87 KEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNVPIM 166 (470)
T ss_pred HHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcCCCceE
Confidence 10 0112345789999999975321 1111 466778777 55442 3677899
Q ss_pred EeecccCHH---hHhhhhC-CCCEEEeCCeeeeEEEEEEcCCch-hHHHHHHHHHHHHHh-cCCCCCEEEEcCcHHHHHH
Q 035699 460 ISSATLDAE---NFSDYFG-SAPIFKIPRRRYHVELFYTKAPEA-DYIEAAIVTALQIHV-NEPIGDILVFLTGQDQFET 533 (633)
Q Consensus 460 l~SAT~~~~---~~s~~f~-~~pii~i~gr~~pv~~~y~~~~~~-~yl~~~v~~l~~i~~-~~~~g~iLVFl~t~~eie~ 533 (633)
++|||++.. .+...+. ..|.+...+...| .++|...+.. +.+. .+..++. ..+...+||||+|+..++.
T Consensus 167 ~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~-nl~~~v~~~~~~~~~----~l~~~l~~~~~~~~~IIF~~s~~~~e~ 241 (470)
T TIGR00614 167 ALTATASPSVREDILRQLNLKNPQIFCTSFDRP-NLYYEVRRKTPKILE----DLLRFIRKEFKGKSGIIYCPSRKKSEQ 241 (470)
T ss_pred EEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCC-CcEEEEEeCCccHHH----HHHHHHHHhcCCCceEEEECcHHHHHH
Confidence 999999653 3334432 2333333222111 1222221111 2222 2333333 2333456999999999999
Q ss_pred HHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccc-cccC
Q 035699 534 AEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVK-SYNP 612 (633)
Q Consensus 534 l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~-~yd~ 612 (633)
++..|... ++.+.++||+|++.+|..+++.|..|..+|||||+++++|||+|+|++||++++|+.. .|-.
T Consensus 242 la~~L~~~---------g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Q 312 (470)
T TIGR00614 242 VTASLQNL---------GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQ 312 (470)
T ss_pred HHHHHHhc---------CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHh
Confidence 99999874 7889999999999999999999999999999999999999999999999999999875 4777
Q ss_pred CCCc
Q 035699 613 KTGM 616 (633)
Q Consensus 613 ~~g~ 616 (633)
+.|.
T Consensus 313 r~GR 316 (470)
T TIGR00614 313 ESGR 316 (470)
T ss_pred hhcC
Confidence 6654
No 47
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.95 E-value=4.4e-27 Score=247.28 Aligned_cols=278 Identities=21% Similarity=0.234 Sum_probs=202.2
Q ss_pred ccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhcccc----C---C-eeeecchhHHHHHHHHHHHHHHh
Q 035699 327 KTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTK----Q---G-KIGCTQLRRVAAMSVAARVSQEM 398 (633)
Q Consensus 327 ~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~----~---g-kilitqPrR~aA~qva~rva~e~ 398 (633)
=.-|.-.+ +..|+.+.++++|++.|-||||||.++.+|+++..+.. . | ..+|+.|||+||.|++.-+.+..
T Consensus 39 ~ekpTlIQ-s~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~ 117 (569)
T KOG0346|consen 39 WEKPTLIQ-SSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLV 117 (569)
T ss_pred cCCcchhh-hcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHH
Confidence 34466555 45556666777899999999999999888877654321 1 2 68999999999999988655432
Q ss_pred ---CCccc-ceEeeeeecc---cccCCCCcEEEeCchHHHHHHhcCC--CCCCceeee----ee--------------cc
Q 035699 399 ---GVKLG-HEVGYSIRFE---DCTSDKTVLKYMTDGMLLREIVLEP--SLESYSVLI----DL--------------IN 451 (633)
Q Consensus 399 ---g~~vg-~~VGy~ir~e---~~~s~~t~Iiv~TpGrLL~~l~~~~--~L~~~s~vI----di--------------~~ 451 (633)
+..+- ..+.-++... ....+.++|+|+|||.|++++..++ .+.+++++| |+ .+
T Consensus 118 ~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeedlk~l~~~ 197 (569)
T KOG0346|consen 118 EYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLRSH 197 (569)
T ss_pred HHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHHHHHHHHh
Confidence 11110 0011011000 1124679999999999999999887 688999988 21 12
Q ss_pred cCCCccEEEeeccc--CHHhHhhhhCCCCEE-EeCCeee----eEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEE
Q 035699 452 YRPDLKLLISSATL--DAENFSDYFGSAPIF-KIPRRRY----HVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVF 524 (633)
Q Consensus 452 ~rpdlklil~SAT~--~~~~~s~~f~~~pii-~i~gr~~----pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVF 524 (633)
..+..|.++||||+ |+..+.+.|-..|++ .+..... .+.+++..+.+.+.+.-++ .++. .....|++|||
T Consensus 198 LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKfllly-allK--L~LI~gKsliF 274 (569)
T KOG0346|consen 198 LPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLY-ALLK--LRLIRGKSLIF 274 (569)
T ss_pred CCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHHH-HHHH--HHHhcCceEEE
Confidence 34567999999999 678888877666654 4433222 2567777777665443221 1221 12335999999
Q ss_pred cCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCC-------------------
Q 035699 525 LTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATN------------------- 585 (633)
Q Consensus 525 l~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATd------------------- 585 (633)
+||.+.+-.+.=.|... ++..|.+.|.||..-|..|++.|-.|...||||||
T Consensus 275 VNtIdr~YrLkLfLeqF---------GiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~ 345 (569)
T KOG0346|consen 275 VNTIDRCYRLKLFLEQF---------GIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEK 345 (569)
T ss_pred EechhhhHHHHHHHHHh---------CcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhcccccccccc
Confidence 99999988888888774 78899999999999999999999999999999999
Q ss_pred ----------------ccccCCCCCCccEEEeCCCCccc-cccCCCCce
Q 035699 586 ----------------IAETSLTIDGIKYVIDPGFAKVK-SYNPKTGME 617 (633)
Q Consensus 586 ----------------IAerGLdIp~V~~VID~G~~k~~-~yd~~~g~~ 617 (633)
=++||||+.+|..||||+||... +|.|+.|.+
T Consensus 346 ~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRT 394 (569)
T KOG0346|consen 346 NPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRT 394 (569)
T ss_pred CCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhcccc
Confidence 15699999999999999999874 599998874
No 48
>PRK09401 reverse gyrase; Reviewed
Probab=99.94 E-value=4.1e-26 Score=274.92 Aligned_cols=255 Identities=17% Similarity=0.142 Sum_probs=175.8
Q ss_pred cCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccceEe
Q 035699 328 TLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVG 407 (633)
Q Consensus 328 ~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~VG 407 (633)
....+++|...++.+..+++++++||||||||+. .+++......++++++|+.|||+||.|++.++... +...+..+.
T Consensus 78 G~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f-~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l-~~~~~~~~~ 155 (1176)
T PRK09401 78 GSKPWSLQRTWAKRLLLGESFAIIAPTGVGKTTF-GLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKF-GEKVGCGVK 155 (1176)
T ss_pred CCCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHH-HHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHH-hhhcCceEE
Confidence 4577889999999999999999999999999964 33332222223458999999999999999877553 333333322
Q ss_pred eeeeccc-----------c-cCCCCcEEEeCchHHHHHHhcCCCCCCceeee-eec-----------------ccC----
Q 035699 408 YSIRFED-----------C-TSDKTVLKYMTDGMLLREIVLEPSLESYSVLI-DLI-----------------NYR---- 453 (633)
Q Consensus 408 y~ir~e~-----------~-~s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-di~-----------------~~r---- 453 (633)
....+.. . .+..++|+|+|||+|.+++. .-.+..++++| |.+ .+.
T Consensus 156 ~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~-~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i 234 (1176)
T PRK09401 156 ILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD-ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDI 234 (1176)
T ss_pred EEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH-hccccccCEEEEEChHHhhhcccchhhHHHhCCCCHHHH
Confidence 1111110 0 12458999999999999876 22345578777 221 121
Q ss_pred -------C-------------------------CccEEEeecccCHHhHh-hhhCCCCEEEeCCee---eeEEEEEEcCC
Q 035699 454 -------P-------------------------DLKLLISSATLDAENFS-DYFGSAPIFKIPRRR---YHVELFYTKAP 497 (633)
Q Consensus 454 -------p-------------------------dlklil~SAT~~~~~~s-~~f~~~pii~i~gr~---~pv~~~y~~~~ 497 (633)
| +.++++||||++...+. .+|.+.--|.+.... ..+...|...+
T Consensus 235 ~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~~v~~~~~~~rnI~~~yi~~~ 314 (1176)
T PRK09401 235 EKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGFEVGSPVFYLRNIVDSYIVDE 314 (1176)
T ss_pred HHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceEEecCcccccCCceEEEEEcc
Confidence 0 46789999999754222 233333234432221 23455565443
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHH---HHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCC
Q 035699 498 EADYIEAAIVTALQIHVNEPIGDILVFLTGQDQ---FETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTP 574 (633)
Q Consensus 498 ~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~e---ie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~ 574 (633)
+. ...+..+.... ++.+|||||++.. ++.+++.|... ++.+..+||+| .+.++.|.
T Consensus 315 --~k----~~~L~~ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~---------gi~v~~~hg~l-----~~~l~~F~ 373 (1176)
T PRK09401 315 --DS----VEKLVELVKRL-GDGGLIFVPSDKGKEYAEELAEYLEDL---------GINAELAISGF-----ERKFEKFE 373 (1176)
T ss_pred --cH----HHHHHHHHHhc-CCCEEEEEecccChHHHHHHHHHHHHC---------CCcEEEEeCcH-----HHHHHHHH
Confidence 22 22233333322 3579999999777 99999999884 89999999999 23459999
Q ss_pred CCCeeEEEe----CCccccCCCCCC-ccEEEeCCCCc
Q 035699 575 EGARKVVLA----TNIAETSLTIDG-IKYVIDPGFAK 606 (633)
Q Consensus 575 ~g~rkVLvA----TdIAerGLdIp~-V~~VID~G~~k 606 (633)
+|..+|||| ||+|+||||||+ |.||||+|+|+
T Consensus 374 ~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 374 EGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred CCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 999999999 799999999999 89999999999
No 49
>PRK00254 ski2-like helicase; Provisional
Probab=99.94 E-value=4.7e-26 Score=265.84 Aligned_cols=268 Identities=18% Similarity=0.139 Sum_probs=187.9
Q ss_pred CCChHHHHHHHHH-HHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccceEe
Q 035699 329 LPIYPFREELLQA-VSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVG 407 (633)
Q Consensus 329 LPi~~~q~~il~a-l~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~VG 407 (633)
--.+++|.++++. +.++++++++||||||||.++..+++......+++++++.|++++|.+++.++.. ++ ..|..|+
T Consensus 22 ~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~-~~-~~g~~v~ 99 (720)
T PRK00254 22 EELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKD-WE-KLGLRVA 99 (720)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHH-Hh-hcCCEEE
Confidence 3467888888875 8899999999999999999988887766544556999999999999999987764 21 2333444
Q ss_pred eeeecccc---cCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eeccc-----------------CCCccEEEeeccc
Q 035699 408 YSIRFEDC---TSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLINY-----------------RPDLKLLISSATL 465 (633)
Q Consensus 408 y~ir~e~~---~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~~~-----------------rpdlklil~SAT~ 465 (633)
...+..+. ....++|+|+||+++..++.... .+.++++|| |.+|. .++.|+|++|||+
T Consensus 100 ~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl 179 (720)
T PRK00254 100 MTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHMLGRAQILGLSATV 179 (720)
T ss_pred EEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHHHhcCcCCcEEEEEccC
Confidence 22221111 12357899999999988876554 788999988 55442 2457999999999
Q ss_pred -CHHhHhhhhCCCCEEEeCCeeeeEEE--EEE-----cCCc-hhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHH
Q 035699 466 -DAENFSDYFGSAPIFKIPRRRYHVEL--FYT-----KAPE-ADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEE 536 (633)
Q Consensus 466 -~~~~~s~~f~~~pii~i~gr~~pv~~--~y~-----~~~~-~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~ 536 (633)
|+..++.|++.. .+....+..|+.. ++. .... ..+.......+..... ..+++||||+|+..++.++.
T Consensus 180 ~n~~~la~wl~~~-~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~ 256 (720)
T PRK00254 180 GNAEELAEWLNAE-LVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVK--KGKGALVFVNTRRSAEKEAL 256 (720)
T ss_pred CCHHHHHHHhCCc-cccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHH--hCCCEEEEEcChHHHHHHHH
Confidence 889999988643 3333333333321 111 1111 1111111222333332 35789999999999999887
Q ss_pred HHHHhhccc-C-----------------CCC------CceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCC
Q 035699 537 ILKQRTRGL-G-----------------TKI------AELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLT 592 (633)
Q Consensus 537 ~L~~~~~~l-~-----------------~~~------~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLd 592 (633)
.|...+..+ . ... -...|.++||+|++++|..+++.|+.|..+|||||+++++|+|
T Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvn 336 (720)
T PRK00254 257 ELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGIN 336 (720)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcC
Confidence 775432110 0 000 0235899999999999999999999999999999999999999
Q ss_pred CCCccEEEe
Q 035699 593 IDGIKYVID 601 (633)
Q Consensus 593 Ip~V~~VID 601 (633)
+|++++||.
T Consensus 337 ipa~~vVI~ 345 (720)
T PRK00254 337 LPAFRVIIR 345 (720)
T ss_pred CCceEEEEC
Confidence 999999995
No 50
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.94 E-value=2.7e-26 Score=262.91 Aligned_cols=268 Identities=16% Similarity=0.180 Sum_probs=189.8
Q ss_pred CChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccceEeee
Q 035699 330 PIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYS 409 (633)
Q Consensus 330 Pi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~VGy~ 409 (633)
...++|.++++++.+++++++++|||||||+++.+|++.. .+.++|+.|+++|+.+....+.. +|.......+..
T Consensus 25 ~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~----~g~tlVisPl~sL~~dqv~~l~~-~gi~~~~~~s~~ 99 (607)
T PRK11057 25 QFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL----DGLTLVVSPLISLMKDQVDQLLA-NGVAAACLNSTQ 99 (607)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc----CCCEEEEecHHHHHHHHHHHHHH-cCCcEEEEcCCC
Confidence 3558999999999999999999999999999776665532 35789999999999988776643 454432211111
Q ss_pred ee------cccccCCCCcEEEeCchHHHHH-HhcCCCCCCceeee-eeccc---------------------CCCccEEE
Q 035699 410 IR------FEDCTSDKTVLKYMTDGMLLRE-IVLEPSLESYSVLI-DLINY---------------------RPDLKLLI 460 (633)
Q Consensus 410 ir------~e~~~s~~t~Iiv~TpGrLL~~-l~~~~~L~~~s~vI-di~~~---------------------rpdlklil 460 (633)
.. +..+......|+|+||++|+.. +.......++++|| |.+|. .|+.++++
T Consensus 100 ~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p~~~~v~ 179 (607)
T PRK11057 100 TREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMA 179 (607)
T ss_pred CHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhCCCCcEEE
Confidence 11 1112345678999999998742 22222344677777 55441 25678999
Q ss_pred eecccCHHh---Hhhhh-CCCCEEEeCCeeeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHH
Q 035699 461 SSATLDAEN---FSDYF-GSAPIFKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEE 536 (633)
Q Consensus 461 ~SAT~~~~~---~s~~f-~~~pii~i~gr~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~ 536 (633)
+|||++... +...+ ...|.+.+.+...| .+.|........ +..++.++.....+++||||+|+..|+.+++
T Consensus 180 lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~-nl~~~v~~~~~~----~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~ 254 (607)
T PRK11057 180 LTATADDTTRQDIVRLLGLNDPLIQISSFDRP-NIRYTLVEKFKP----LDQLMRYVQEQRGKSGIIYCNSRAKVEDTAA 254 (607)
T ss_pred EecCCChhHHHHHHHHhCCCCeEEEECCCCCC-cceeeeeeccch----HHHHHHHHHhcCCCCEEEEECcHHHHHHHHH
Confidence 999996532 33333 23455444332222 122222221111 2234444445566889999999999999999
Q ss_pred HHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccc-cccCCCC
Q 035699 537 ILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVK-SYNPKTG 615 (633)
Q Consensus 537 ~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~-~yd~~~g 615 (633)
.|... ++.+.++||+|++.+|..+++.|..|..+|||||+++++|||+|+|++||++++|+.. .|-.+.|
T Consensus 255 ~L~~~---------g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~G 325 (607)
T PRK11057 255 RLQSR---------GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETG 325 (607)
T ss_pred HHHhC---------CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhh
Confidence 99874 7889999999999999999999999999999999999999999999999999999864 4666555
Q ss_pred c
Q 035699 616 M 616 (633)
Q Consensus 616 ~ 616 (633)
.
T Consensus 326 R 326 (607)
T PRK11057 326 R 326 (607)
T ss_pred h
Confidence 4
No 51
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.94 E-value=6.9e-26 Score=265.17 Aligned_cols=269 Identities=14% Similarity=0.111 Sum_probs=185.2
Q ss_pred CChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccceEeee
Q 035699 330 PIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYS 409 (633)
Q Consensus 330 Pi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~VGy~ 409 (633)
...++|.++++++.+++++++++|||+|||+++.+|++.. +|.++|+.|+++|+.+....+.. .|+......|..
T Consensus 460 sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~----~GiTLVISPLiSLmqDQV~~L~~-~GI~Aa~L~s~~ 534 (1195)
T PLN03137 460 SFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC----PGITLVISPLVSLIQDQIMNLLQ-ANIPAASLSAGM 534 (1195)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc----CCcEEEEeCHHHHHHHHHHHHHh-CCCeEEEEECCC
Confidence 4678899999999999999999999999999887777643 35789999999998754333332 344432222211
Q ss_pred eeccc------cc--CCCCcEEEeCchHHHH--HHhcC----CCCCCceeee-eecc---------------------cC
Q 035699 410 IRFED------CT--SDKTVLKYMTDGMLLR--EIVLE----PSLESYSVLI-DLIN---------------------YR 453 (633)
Q Consensus 410 ir~e~------~~--s~~t~Iiv~TpGrLL~--~l~~~----~~L~~~s~vI-di~~---------------------~r 453 (633)
...+. .. ....+|+|+|||+|.. .+... .....++.|| |.+| ..
T Consensus 535 s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~f 614 (1195)
T PLN03137 535 EWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKF 614 (1195)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHhC
Confidence 11110 11 1467999999999852 22211 1233456656 4433 23
Q ss_pred CCccEEEeecccCH---HhHhhhhCC-CCEEEeCCeeeeEEEEEEcCCchhHHHHHHHHHHHHHhc-CCCCCEEEEcCcH
Q 035699 454 PDLKLLISSATLDA---ENFSDYFGS-APIFKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVN-EPIGDILVFLTGQ 528 (633)
Q Consensus 454 pdlklil~SAT~~~---~~~s~~f~~-~pii~i~gr~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~-~~~g~iLVFl~t~ 528 (633)
|+.+++++|||++. +.+...+.- .+++...+.. ...++|...+..... +..+..++.. ...+..||||+++
T Consensus 615 p~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~-RpNL~y~Vv~k~kk~---le~L~~~I~~~~~~esgIIYC~SR 690 (1195)
T PLN03137 615 PNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFN-RPNLWYSVVPKTKKC---LEDIDKFIKENHFDECGIIYCLSR 690 (1195)
T ss_pred CCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccC-ccceEEEEeccchhH---HHHHHHHHHhcccCCCceeEeCch
Confidence 56788999999965 334444432 2332222211 123445444433221 2223333322 2346789999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccc
Q 035699 529 DQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVK 608 (633)
Q Consensus 529 ~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~ 608 (633)
.+|+.+++.|... ++.+.++||+|++.+|..+++.|..|..+|||||+++++|||+|+|++||++|+|+..
T Consensus 691 ke~E~LAe~L~~~---------Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSi 761 (1195)
T PLN03137 691 MDCEKVAERLQEF---------GHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSI 761 (1195)
T ss_pred hHHHHHHHHHHHC---------CCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCH
Confidence 9999999999874 7889999999999999999999999999999999999999999999999999999875
Q ss_pred -cccCCCCc
Q 035699 609 -SYNPKTGM 616 (633)
Q Consensus 609 -~yd~~~g~ 616 (633)
.|..+.|.
T Consensus 762 EsYyQriGR 770 (1195)
T PLN03137 762 EGYHQECGR 770 (1195)
T ss_pred HHHHhhhcc
Confidence 47776654
No 52
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.94 E-value=7.1e-26 Score=272.32 Aligned_cols=257 Identities=19% Similarity=0.194 Sum_probs=183.1
Q ss_pred ChHHHHHHHHHHHcC------CeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccc
Q 035699 331 IYPFREELLQAVSEY------PVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGH 404 (633)
Q Consensus 331 i~~~q~~il~al~~~------~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~ 404 (633)
..+.|.++++.+..+ .+++++|+||||||.++...++.. ...+.+++|+.||++||.|++..+...++. .+.
T Consensus 601 ~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~-~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~-~~v 678 (1147)
T PRK10689 601 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA-VENHKQVAVLVPTTLLAQQHYDNFRDRFAN-WPV 678 (1147)
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHH-HHcCCeEEEEeCcHHHHHHHHHHHHHhhcc-CCc
Confidence 456777788888776 789999999999998765554433 233459999999999999999988765532 122
Q ss_pred eEeeeeeccc----c------cCCCCcEEEeCchHHHHHHhcCCCCCCceeee-eecc------------cCCCccEEEe
Q 035699 405 EVGYSIRFED----C------TSDKTVLKYMTDGMLLREIVLEPSLESYSVLI-DLIN------------YRPDLKLLIS 461 (633)
Q Consensus 405 ~VGy~ir~e~----~------~s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-di~~------------~rpdlklil~ 461 (633)
.++...++.. . ....++|+|+||+.| .....+.++.++| |..+ ..++.++++|
T Consensus 679 ~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~~~v~~~~L~lLVIDEahrfG~~~~e~lk~l~~~~qvLl~ 754 (1147)
T PRK10689 679 RIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----QSDVKWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTL 754 (1147)
T ss_pred eEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----hCCCCHhhCCEEEEechhhcchhHHHHHHhcCCCCcEEEE
Confidence 2332222211 1 123579999999744 2333578888888 4332 2457899999
Q ss_pred ecccCHHhHh---hhhCCCCEEEeCC-eeeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHH
Q 035699 462 SATLDAENFS---DYFGSAPIFKIPR-RRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEI 537 (633)
Q Consensus 462 SAT~~~~~~s---~~f~~~pii~i~g-r~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~ 537 (633)
|||+....+. .++.++.++..+. .+.++..++..........+. +..+. ..|+++||||+.+.++.+++.
T Consensus 755 SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~~~~~~~~k~~i---l~el~---r~gqv~vf~n~i~~ie~la~~ 828 (1147)
T PRK10689 755 TATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVREAI---LREIL---RGGQVYYLYNDVENIQKAAER 828 (1147)
T ss_pred cCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEEEecCcHHHHHHH---HHHHh---cCCeEEEEECCHHHHHHHHHH
Confidence 9998654333 2344555666543 345666655442211111111 11121 258999999999999999999
Q ss_pred HHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEE-----eCCCCc
Q 035699 538 LKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVI-----DPGFAK 606 (633)
Q Consensus 538 L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VI-----D~G~~k 606 (633)
|.+.. +++.|..+||+|++.+|..++..|.+|..+|||||+|+++|||||+|++|| ++|++.
T Consensus 829 L~~~~-------p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq 895 (1147)
T PRK10689 829 LAELV-------PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQ 895 (1147)
T ss_pred HHHhC-------CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHH
Confidence 98863 467899999999999999999999999999999999999999999999999 888865
No 53
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.94 E-value=1.2e-27 Score=247.81 Aligned_cols=285 Identities=21% Similarity=0.198 Sum_probs=195.3
Q ss_pred ChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHH----Hhc----ccc-CC-eeeecchhHHHHHHHHHHHHHHh--
Q 035699 331 IYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLY----EAG----YTK-QG-KIGCTQLRRVAAMSVAARVSQEM-- 398 (633)
Q Consensus 331 i~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Ll----e~~----~~~-~g-kilitqPrR~aA~qva~rva~e~-- 398 (633)
..|+|-+=++-++++++.|..|-||||||..|.+|+. +.. +.. .| --+|++|.|+||.|...-+....
T Consensus 193 PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~ 272 (610)
T KOG0341|consen 193 PTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAA 272 (610)
T ss_pred CCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHH
Confidence 3455666678888999999999999999987555432 221 111 23 57889999999999877554332
Q ss_pred ----CCcccceEeeeeeccc------ccCCCCcEEEeCchHHHHHHhcCC-CCCCceeee--------------ee---c
Q 035699 399 ----GVKLGHEVGYSIRFED------CTSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI--------------DL---I 450 (633)
Q Consensus 399 ----g~~vg~~VGy~ir~e~------~~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI--------------di---~ 450 (633)
|.+. ...+.+|++.+ ..+.+.+|+|+|||||.++|.... +|+-+.++. || .
T Consensus 273 L~e~g~P~-lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF 351 (610)
T KOG0341|consen 273 LQEAGYPE-LRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIF 351 (610)
T ss_pred HHhcCChh-hhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHH
Confidence 2211 01112222222 225688999999999999987655 677777666 22 1
Q ss_pred -ccCCCccEEEeecccCH--HhHhhhhCCCCEEEeCCeeeeEEEEEEcCCchhHHH--HHHHHHHHHHhcCCCCCEEEEc
Q 035699 451 -NYRPDLKLLISSATLDA--ENFSDYFGSAPIFKIPRRRYHVELFYTKAPEADYIE--AAIVTALQIHVNEPIGDILVFL 525 (633)
Q Consensus 451 -~~rpdlklil~SAT~~~--~~~s~~f~~~pii~i~gr~~pv~~~y~~~~~~~yl~--~~v~~l~~i~~~~~~g~iLVFl 525 (633)
+|..+.|++||||||.. ..|++.-.--|+..--||.-.-... ...+..|+. +++..++..+ +....++|||+
T Consensus 352 ~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsld--ViQevEyVkqEaKiVylLeCL-QKT~PpVLIFa 428 (610)
T KOG0341|consen 352 SFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLD--VIQEVEYVKQEAKIVYLLECL-QKTSPPVLIFA 428 (610)
T ss_pred HHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchh--HHHHHHHHHhhhhhhhHHHHh-ccCCCceEEEe
Confidence 34567899999999953 4455433223332222331100000 011233442 3444444433 23346899999
Q ss_pred CcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCC
Q 035699 526 TGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFA 605 (633)
Q Consensus 526 ~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~ 605 (633)
....+|+.++++|.- .++-++.|||+..|+.|....+.|+.|+..||||||||+.|||+|+|.||||+++|
T Consensus 429 EkK~DVD~IhEYLLl---------KGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP 499 (610)
T KOG0341|consen 429 EKKADVDDIHEYLLL---------KGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMP 499 (610)
T ss_pred ccccChHHHHHHHHH---------ccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCCh
Confidence 999999999999865 48999999999999999999999999999999999999999999999999999999
Q ss_pred ccc-cccCCCCc------eeeeeeeccHHH
Q 035699 606 KVK-SYNPKTGM------ESLLVNPISKAS 628 (633)
Q Consensus 606 k~~-~yd~~~g~------~~l~~~~iSka~ 628 (633)
.+- .|-++.|. .-+.++.|.|++
T Consensus 500 ~eIENYVHRIGRTGRsg~~GiATTfINK~~ 529 (610)
T KOG0341|consen 500 EEIENYVHRIGRTGRSGKTGIATTFINKNQ 529 (610)
T ss_pred HHHHHHHHHhcccCCCCCcceeeeeecccc
Confidence 874 48776554 346667777654
No 54
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.94 E-value=1.8e-25 Score=263.80 Aligned_cols=257 Identities=16% Similarity=0.162 Sum_probs=185.2
Q ss_pred ChHHHHHHHHHHHcC------CeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccc
Q 035699 331 IYPFREELLQAVSEY------PVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGH 404 (633)
Q Consensus 331 i~~~q~~il~al~~~------~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~ 404 (633)
..+.|...++.+..+ .+++++|+||||||.++..+++... ..+.+++++.||++||.|++..+...++. .+.
T Consensus 452 ~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al-~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~-~~i 529 (926)
T TIGR00580 452 ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAV-LDGKQVAVLVPTTLLAQQHFETFKERFAN-FPV 529 (926)
T ss_pred CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHH-HhCCeEEEEeCcHHHHHHHHHHHHHHhcc-CCc
Confidence 356788888888774 6789999999999998877766553 33458999999999999999988776532 222
Q ss_pred eEeeeeeccc----------ccCCCCcEEEeCchHHHHHHhcCCCCCCceeee-eecc------------cCCCccEEEe
Q 035699 405 EVGYSIRFED----------CTSDKTVLKYMTDGMLLREIVLEPSLESYSVLI-DLIN------------YRPDLKLLIS 461 (633)
Q Consensus 405 ~VGy~ir~e~----------~~s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-di~~------------~rpdlklil~ 461 (633)
.++...++.. ....+++|+|+||.. +...-.+.+++++| |..+ ..++.++++|
T Consensus 530 ~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l~~~v~f~~L~llVIDEahrfgv~~~~~L~~~~~~~~vL~~ 605 (926)
T TIGR00580 530 TIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----LQKDVKFKDLGLLIIDEEQRFGVKQKEKLKELRTSVDVLTL 605 (926)
T ss_pred EEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----hhCCCCcccCCEEEeecccccchhHHHHHHhcCCCCCEEEE
Confidence 3332222111 012358999999942 23344688999988 4443 2356789999
Q ss_pred ecccCHHhHhhhh---CCCCEEEeC-CeeeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHH
Q 035699 462 SATLDAENFSDYF---GSAPIFKIP-RRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEI 537 (633)
Q Consensus 462 SAT~~~~~~s~~f---~~~pii~i~-gr~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~ 537 (633)
|||+....+...+ .+..++..+ ..+.|+..++..... ..+.. .+...+ ...|+++||||+.+.++.+++.
T Consensus 606 SATpiprtl~~~l~g~~d~s~I~~~p~~R~~V~t~v~~~~~-~~i~~---~i~~el--~~g~qv~if~n~i~~~e~l~~~ 679 (926)
T TIGR00580 606 SATPIPRTLHMSMSGIRDLSIIATPPEDRLPVRTFVMEYDP-ELVRE---AIRREL--LRGGQVFYVHNRIESIEKLATQ 679 (926)
T ss_pred ecCCCHHHHHHHHhcCCCcEEEecCCCCccceEEEEEecCH-HHHHH---HHHHHH--HcCCeEEEEECCcHHHHHHHHH
Confidence 9998766554322 234444443 345678777664322 11111 122111 2358999999999999999999
Q ss_pred HHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCc
Q 035699 538 LKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAK 606 (633)
Q Consensus 538 L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k 606 (633)
|.... +++.|..+||+|++.+|..++..|..|..+|||||+|+++|||||+|++||+.+.+.
T Consensus 680 L~~~~-------p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~ 741 (926)
T TIGR00580 680 LRELV-------PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADK 741 (926)
T ss_pred HHHhC-------CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCC
Confidence 98753 578999999999999999999999999999999999999999999999999765543
No 55
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.94 E-value=4e-26 Score=261.45 Aligned_cols=277 Identities=17% Similarity=0.210 Sum_probs=199.1
Q ss_pred CChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhcccc------CC-eeeecchhHHHHHHHHHHHHHH---hC
Q 035699 330 PIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTK------QG-KIGCTQLRRVAAMSVAARVSQE---MG 399 (633)
Q Consensus 330 Pi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~------~g-kilitqPrR~aA~qva~rva~e---~g 399 (633)
+..++|.+.+++|.++++||.+|.||||||.+|.+|++.....+ .| -.+|+.|||++|+||..-+... +|
T Consensus 387 k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ 466 (997)
T KOG0334|consen 387 KPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLG 466 (997)
T ss_pred CCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcC
Confidence 66777888899999999999999999999999877766432221 23 5788999999999997755443 33
Q ss_pred CcccceEe-eeeec-ccccCCCCcEEEeCchHHHHHHhcCC----CCCCceeee-----------------e-ecccCCC
Q 035699 400 VKLGHEVG-YSIRF-EDCTSDKTVLKYMTDGMLLREIVLEP----SLESYSVLI-----------------D-LINYRPD 455 (633)
Q Consensus 400 ~~vg~~VG-y~ir~-e~~~s~~t~Iiv~TpGrLL~~l~~~~----~L~~~s~vI-----------------d-i~~~rpd 455 (633)
..+-..+| +.+.. ......++.|+|||||++++.+..+. +|..+.++| . |-+.+|+
T Consensus 467 ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpd 546 (997)
T KOG0334|consen 467 IRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPD 546 (997)
T ss_pred ceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcchh
Confidence 33322222 11110 01123569999999999999987543 455555777 1 1245789
Q ss_pred ccEEEeecccCH--HhHhhhhCCCCE-EEeCCeee---eEEEEEEcCC-chhHHHHHHHHHHHHHhcCCCCCEEEEcCcH
Q 035699 456 LKLLISSATLDA--ENFSDYFGSAPI-FKIPRRRY---HVELFYTKAP-EADYIEAAIVTALQIHVNEPIGDILVFLTGQ 528 (633)
Q Consensus 456 lklil~SAT~~~--~~~s~~f~~~pi-i~i~gr~~---pv~~~y~~~~-~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~ 528 (633)
.|+++||||++. +.++.-....|+ +.+.|+.. -|.+....++ +...+..++..+-. . ...+++||||..+
T Consensus 547 rQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e-~--~e~~~tiiFv~~q 623 (997)
T KOG0334|consen 547 RQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGE-R--YEDGKTIIFVDKQ 623 (997)
T ss_pred hhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHH-H--hhcCCEEEEEcCc
Confidence 999999999965 444443333555 34444432 2344444444 44443332222222 2 2369999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCcc-
Q 035699 529 DQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKV- 607 (633)
Q Consensus 529 ~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~- 607 (633)
+.|+.|.+.|+.. ++.+..|||+.++..|..+.+.|++|..++||||++++||||+.++.+|||+.+|.-
T Consensus 624 e~~d~l~~~L~~a---------g~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~ 694 (997)
T KOG0334|consen 624 EKADALLRDLQKA---------GYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHY 694 (997)
T ss_pred hHHHHHHHHHHhc---------CcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhH
Confidence 9999999999974 889999999999999999999999999999999999999999999999999999974
Q ss_pred ccccCCCCcee
Q 035699 608 KSYNPKTGMES 618 (633)
Q Consensus 608 ~~yd~~~g~~~ 618 (633)
..|-+++|.+.
T Consensus 695 edyvhR~gRTg 705 (997)
T KOG0334|consen 695 EDYVHRVGRTG 705 (997)
T ss_pred HHHHHHhcccc
Confidence 34777665543
No 56
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.93 E-value=1e-25 Score=272.91 Aligned_cols=265 Identities=18% Similarity=0.208 Sum_probs=180.1
Q ss_pred EeccCCChhhchHHHHHHHhcccc------------CCeeeecchhHHHHHHHHHHHHHH----------hCC-cccceE
Q 035699 350 IVGETGSGKTTQIPQYLYEAGYTK------------QGKIGCTQLRRVAAMSVAARVSQE----------MGV-KLGHEV 406 (633)
Q Consensus 350 i~a~TGSGKTt~lp~~Lle~~~~~------------~gkilitqPrR~aA~qva~rva~e----------~g~-~vg~~V 406 (633)
|+||||||||+++.+++++..... +.+++++.|+|+||.++...+... +|. ..+..|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999888776554321 238999999999999998876431 121 234445
Q ss_pred eeeeeccc------ccCCCCcEEEeCchHHHHHHhcCC--CCCCceeee-eecc--------------------c-CCCc
Q 035699 407 GYSIRFED------CTSDKTVLKYMTDGMLLREIVLEP--SLESYSVLI-DLIN--------------------Y-RPDL 456 (633)
Q Consensus 407 Gy~ir~e~------~~s~~t~Iiv~TpGrLL~~l~~~~--~L~~~s~vI-di~~--------------------~-rpdl 456 (633)
|...+.-. .....++|+|+||++|..++.+.. .|+++.+|| |.+| . ..++
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 42222111 113468999999999998776442 689999998 3322 1 1357
Q ss_pred cEEEeeccc-CHHhHhhhhCCC-CEEEe-C-C-eeeeEEEEEEcCCchh-------------------HH-HHHHHHHHH
Q 035699 457 KLLISSATL-DAENFSDYFGSA-PIFKI-P-R-RRYHVELFYTKAPEAD-------------------YI-EAAIVTALQ 511 (633)
Q Consensus 457 klil~SAT~-~~~~~s~~f~~~-pii~i-~-g-r~~pv~~~y~~~~~~~-------------------yl-~~~v~~l~~ 511 (633)
|+|++|||+ |.+.+++|+... |+..+ + . +..++.++. +..... .+ ......++.
T Consensus 161 QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~v-p~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~ 239 (1490)
T PRK09751 161 QRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVV-PVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILD 239 (1490)
T ss_pred eEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceEEEE-ecCchhhccccccccccccchhhhhhhhHHHHHHHHH
Confidence 999999999 778899998643 43222 2 2 223333322 211100 00 011112222
Q ss_pred HHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcc-c-----------------C------CCCCceEEEeccCCCCHHHHH
Q 035699 512 IHVNEPIGDILVFLTGQDQFETAEEILKQRTRG-L-----------------G------TKIAELIICPIYGNLPTELQA 567 (633)
Q Consensus 512 i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~-l-----------------~------~~~~~~~v~~lHg~l~~~~R~ 567 (633)
.+. ..+++||||||+..++.++..|.+.... . + .+...+.+..+||+|++++|.
T Consensus 240 ~i~--~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 240 EVL--RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HHh--cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 222 2478999999999999999999875311 0 0 001124578999999999999
Q ss_pred HHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCcc-ccccCCCCce
Q 035699 568 KIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKV-KSYNPKTGME 617 (633)
Q Consensus 568 ~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~-~~yd~~~g~~ 617 (633)
.+++.|+.|..+|||||+.+|+||||++|++||++|.|.. .+|-.+.|..
T Consensus 318 ~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRA 368 (1490)
T PRK09751 318 ITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRA 368 (1490)
T ss_pred HHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999976 3477766654
No 57
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=9e-26 Score=235.28 Aligned_cols=284 Identities=14% Similarity=0.233 Sum_probs=213.7
Q ss_pred HHHHHHHHHHccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCC--eeeecchhHHHHHHHHHHH
Q 035699 317 SALEMLQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQG--KIGCTQLRRVAAMSVAARV 394 (633)
Q Consensus 317 ~~~~~l~~~r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~g--kilitqPrR~aA~qva~rv 394 (633)
..+..|...-=.-|...+|.+|++.+.+++ +++.+++|||||.++...++...-.... .++++.|+|++|+|+.+ +
T Consensus 36 ~LLrgiy~yGFekPSaIQqraI~p~i~G~d-v~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~-v 113 (397)
T KOG0327|consen 36 SLLRGIYAYGFEKPSAIQQRAILPCIKGHD-VIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQK-V 113 (397)
T ss_pred HHHhHHHhhccCCchHHHhccccccccCCc-eeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHH-H
Confidence 345566555567799999999999887755 8999999999999988887765433332 79999999999999984 5
Q ss_pred HHHhCCccc----ceEeeeeecccc---cCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-----------------ee
Q 035699 395 SQEMGVKLG----HEVGYSIRFEDC---TSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-----------------DL 449 (633)
Q Consensus 395 a~e~g~~vg----~~VGy~ir~e~~---~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-----------------di 449 (633)
...+|...+ ..+|......++ ....++|+++|||++++++.... ....+..++ +|
T Consensus 114 ~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~i 193 (397)
T KOG0327|consen 114 VRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDI 193 (397)
T ss_pred HHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHHHH
Confidence 555544433 334433333222 23568999999999999987665 355567766 22
Q ss_pred c-ccCCCccEEEeecccCH--HhHhhhhCCCCEEEeCCe-e---eeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEE
Q 035699 450 I-NYRPDLKLLISSATLDA--ENFSDYFGSAPIFKIPRR-R---YHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDIL 522 (633)
Q Consensus 450 ~-~~rpdlklil~SAT~~~--~~~s~~f~~~pii~i~gr-~---~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iL 522 (633)
. +..++.|++++|||+.. ..+++-|...|+...-.+ . --+.++|+...... ++.+++.++. ...+.+
T Consensus 194 f~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~----k~~~l~dl~~--~~~q~~ 267 (397)
T KOG0327|consen 194 FQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE----KLDTLCDLYR--RVTQAV 267 (397)
T ss_pred HHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc----cccHHHHHHH--hhhcce
Confidence 2 23468899999999954 556666665555333221 1 12344554332222 6678888887 457899
Q ss_pred EEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeC
Q 035699 523 VFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDP 602 (633)
Q Consensus 523 VFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~ 602 (633)
|||||+..+.++...|..+ ++.+..+||.|.+.+|..++..|+.|..+|||+|++++|||||-++..|||+
T Consensus 268 if~nt~r~v~~l~~~L~~~---------~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slviny 338 (397)
T KOG0327|consen 268 IFCNTRRKVDNLTDKLRAH---------GFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNY 338 (397)
T ss_pred EEecchhhHHHHHHHHhhC---------CceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeee
Confidence 9999999999999999553 8999999999999999999999999999999999999999999999999999
Q ss_pred CCCccc-cccCCCCce
Q 035699 603 GFAKVK-SYNPKTGME 617 (633)
Q Consensus 603 G~~k~~-~yd~~~g~~ 617 (633)
.+|-.. +|-++.|..
T Consensus 339 dlP~~~~~yihR~gr~ 354 (397)
T KOG0327|consen 339 DLPARKENYIHRIGRA 354 (397)
T ss_pred ccccchhhhhhhcccc
Confidence 999765 498888764
No 58
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.93 E-value=3.6e-25 Score=255.62 Aligned_cols=274 Identities=15% Similarity=0.199 Sum_probs=176.0
Q ss_pred cCCChHHHHHHHHHHHcCC-eEEEeccCCChhhchHHHHHHHhccccC-C-eeeecchhHHHHHHHHHHHHHHhCCcc--
Q 035699 328 TLPIYPFREELLQAVSEYP-VLVIVGETGSGKTTQIPQYLYEAGYTKQ-G-KIGCTQLRRVAAMSVAARVSQEMGVKL-- 402 (633)
Q Consensus 328 ~LPi~~~q~~il~al~~~~-~vIi~a~TGSGKTt~lp~~Lle~~~~~~-g-kilitqPrR~aA~qva~rva~e~g~~v-- 402 (633)
....++||.++++.+.+++ ++++.+|||||||.+|..|++-...... . ++++++|||++|.|+++.+.. ++..+
T Consensus 13 G~~PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~-~~k~l~~ 91 (844)
T TIGR02621 13 GYSPFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEK-IGERLPD 91 (844)
T ss_pred CCCCCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHH-HHHHhcc
Confidence 4458899999999999987 6777899999999877666552211111 2 566688999999999875533 32211
Q ss_pred ---------------------cceEeeeeecccc------cCCCCcEEEeCchHHHHHHhc---------CC----CCCC
Q 035699 403 ---------------------GHEVGYSIRFEDC------TSDKTVLKYMTDGMLLREIVL---------EP----SLES 442 (633)
Q Consensus 403 ---------------------g~~VGy~ir~e~~------~s~~t~Iiv~TpGrLL~~l~~---------~~----~L~~ 442 (633)
+..+...+++.+. ...+++|+|+|+.++.+-.+. .| .|++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~ 171 (844)
T TIGR02621 92 VPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQ 171 (844)
T ss_pred cchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhcc
Confidence 1223322222221 235689999996444332221 01 2678
Q ss_pred ceeee---------------eeccc--CC-C---ccEEEeecccCH--HhHhhhhCCCC-EEEeCCeeeeE--EEEEEcC
Q 035699 443 YSVLI---------------DLINY--RP-D---LKLLISSATLDA--ENFSDYFGSAP-IFKIPRRRYHV--ELFYTKA 496 (633)
Q Consensus 443 ~s~vI---------------di~~~--rp-d---lklil~SAT~~~--~~~s~~f~~~p-ii~i~gr~~pv--~~~y~~~ 496 (633)
++++| .|+.. +| . +|+++||||++. ..+...+...+ .+.+....... ..+|.+.
T Consensus 172 v~~LVLDEADLd~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~v~v 251 (844)
T TIGR02621 172 DALIVHDEAHLEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKLVPP 251 (844)
T ss_pred ceEEEEehhhhccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccceEEEEec
Confidence 88888 22332 12 2 689999999953 34444443333 33332222111 1223343
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHH-----HHhC
Q 035699 497 PEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQA-----KIFE 571 (633)
Q Consensus 497 ~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~-----~i~~ 571 (633)
+....+...+..+..++. ...+++||||||+..++.+++.|.+. ++ ..|||+|++.+|. .+++
T Consensus 252 ~~e~Kl~~lv~~L~~ll~-e~g~~vLVF~NTv~~Aq~L~~~L~~~---------g~--~lLHG~m~q~dR~~~~~~~il~ 319 (844)
T TIGR02621 252 SDEKFLSTMVKELNLLMK-DSGGAILVFCRTVKHVRKVFAKLPKE---------KF--ELLTGTLRGAERDDLVKKEIFN 319 (844)
T ss_pred ChHHHHHHHHHHHHHHHh-hCCCcEEEEECCHHHHHHHHHHHHhc---------CC--eEeeCCCCHHHHhhHHHHHHHH
Confidence 333344444444444332 34688999999999999999999763 33 8999999999999 7788
Q ss_pred CCCC----CC-------eeEEEeCCccccCCCCCCccEEEeCCCCccccccCCCCc
Q 035699 572 PTPE----GA-------RKVVLATNIAETSLTIDGIKYVIDPGFAKVKSYNPKTGM 616 (633)
Q Consensus 572 ~f~~----g~-------rkVLvATdIAerGLdIp~V~~VID~G~~k~~~yd~~~g~ 616 (633)
.|.+ |. .+|||||+++|+||||+. ++||+.-.|. .+|-++.|.
T Consensus 320 ~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP~-esyIQRiGR 373 (844)
T TIGR02621 320 RFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAPF-ESMQQRFGR 373 (844)
T ss_pred HHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCCH-HHHHHHhcc
Confidence 8876 43 689999999999999997 7777755553 456666553
No 59
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.93 E-value=6.5e-25 Score=254.33 Aligned_cols=260 Identities=13% Similarity=0.111 Sum_probs=185.1
Q ss_pred CChHHHHHHHHHHHcC------CeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCccc
Q 035699 330 PIYPFREELLQAVSEY------PVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLG 403 (633)
Q Consensus 330 Pi~~~q~~il~al~~~------~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg 403 (633)
..++.|+..++.|.++ .+++++|+||||||.++..+++... ..+.+++++.||++||.|++..+...+. ..|
T Consensus 261 ~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~-~~g~q~lilaPT~~LA~Q~~~~l~~l~~-~~~ 338 (681)
T PRK10917 261 ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAI-EAGYQAALMAPTEILAEQHYENLKKLLE-PLG 338 (681)
T ss_pred CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEEeccHHHHHHHHHHHHHHHh-hcC
Confidence 3567888888888776 3789999999999998888777653 3344899999999999999998776542 223
Q ss_pred ceEeeeeeccc----------ccCCCCcEEEeCchHHHHHHhcCCCCCCceeee-eeccc------------CCCccEEE
Q 035699 404 HEVGYSIRFED----------CTSDKTVLKYMTDGMLLREIVLEPSLESYSVLI-DLINY------------RPDLKLLI 460 (633)
Q Consensus 404 ~~VGy~ir~e~----------~~s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-di~~~------------rpdlklil 460 (633)
..|+...+... ..+..++|+||||+++... ..+.+++++| |.+|. ....++++
T Consensus 339 i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~----v~~~~l~lvVIDE~Hrfg~~qr~~l~~~~~~~~iL~ 414 (681)
T PRK10917 339 IRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDD----VEFHNLGLVIIDEQHRFGVEQRLALREKGENPHVLV 414 (681)
T ss_pred cEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhccc----chhcccceEEEechhhhhHHHHHHHHhcCCCCCEEE
Confidence 33443222221 1133589999999987532 2578888888 66553 22468999
Q ss_pred eecccCHHhHhh-hhCCCCEEE---eCCeeeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcH--------
Q 035699 461 SSATLDAENFSD-YFGSAPIFK---IPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQ-------- 528 (633)
Q Consensus 461 ~SAT~~~~~~s~-~f~~~pii~---i~gr~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~-------- 528 (633)
||||+....+.. ++++..+.. .|..+.|+..++......+. .+..+.... ...++++||||..
T Consensus 415 ~SATp~prtl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~---~~~~i~~~~--~~g~q~~v~~~~ie~s~~l~~ 489 (681)
T PRK10917 415 MTATPIPRTLAMTAYGDLDVSVIDELPPGRKPITTVVIPDSRRDE---VYERIREEI--AKGRQAYVVCPLIEESEKLDL 489 (681)
T ss_pred EeCCCCHHHHHHHHcCCCceEEEecCCCCCCCcEEEEeCcccHHH---HHHHHHHHH--HcCCcEEEEEcccccccchhH
Confidence 999987655543 333322222 24434567776665433322 223333322 2346899999954
Q ss_pred HHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCcc
Q 035699 529 DQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKV 607 (633)
Q Consensus 529 ~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~ 607 (633)
..++.+++.|.... +++.|..+||+|++.+|..+++.|..|..+|||||+++++|||||++++||+.+.++.
T Consensus 490 ~~~~~~~~~L~~~~-------~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~ 561 (681)
T PRK10917 490 QSAEETYEELQEAF-------PELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERF 561 (681)
T ss_pred HHHHHHHHHHHHHC-------CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCC
Confidence 45666777776643 3578999999999999999999999999999999999999999999999999988763
No 60
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.93 E-value=7.3e-25 Score=252.12 Aligned_cols=259 Identities=15% Similarity=0.149 Sum_probs=181.5
Q ss_pred ChHHHHHHHHHHHcC------CeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccc
Q 035699 331 IYPFREELLQAVSEY------PVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGH 404 (633)
Q Consensus 331 i~~~q~~il~al~~~------~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~ 404 (633)
.++.|+.+++.|.++ .+.+++|+||||||.++..+++.. +..+.+++++.||++||.|++..+...++ ..|.
T Consensus 236 lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~-~~~g~qvlilaPT~~LA~Q~~~~~~~l~~-~~gi 313 (630)
T TIGR00643 236 LTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAA-IEAGYQVALMAPTEILAEQHYNSLRNLLA-PLGI 313 (630)
T ss_pred CCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHH-HHcCCcEEEECCHHHHHHHHHHHHHHHhc-ccCc
Confidence 566788888877765 257999999999999887776655 23445899999999999999988876553 2233
Q ss_pred eEeeeeeccc----------ccCCCCcEEEeCchHHHHHHhcCCCCCCceeee-eeccc------------CC---CccE
Q 035699 405 EVGYSIRFED----------CTSDKTVLKYMTDGMLLREIVLEPSLESYSVLI-DLINY------------RP---DLKL 458 (633)
Q Consensus 405 ~VGy~ir~e~----------~~s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-di~~~------------rp---dlkl 458 (633)
.++....... ..+..++|+|+||+++.+. ..+.+++++| |.+|. .+ ..++
T Consensus 314 ~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~----~~~~~l~lvVIDEaH~fg~~qr~~l~~~~~~~~~~~~ 389 (630)
T TIGR00643 314 EVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEK----VEFKRLALVIIDEQHRFGVEQRKKLREKGQGGFTPHV 389 (630)
T ss_pred EEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcc----ccccccceEEEechhhccHHHHHHHHHhcccCCCCCE
Confidence 3332222111 1134579999999987542 3578889888 66553 12 5689
Q ss_pred EEeecccCHHhHhh-hhCCC--CE-EEeCCeeeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcH------
Q 035699 459 LISSATLDAENFSD-YFGSA--PI-FKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQ------ 528 (633)
Q Consensus 459 il~SAT~~~~~~s~-~f~~~--pi-i~i~gr~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~------ 528 (633)
++||||+....+.. .+.+. .+ -..|..+.|+..++...... ...+..+.... ...++++||||..
T Consensus 390 l~~SATp~prtl~l~~~~~l~~~~i~~~p~~r~~i~~~~~~~~~~---~~~~~~i~~~l--~~g~q~~v~~~~i~~s~~~ 464 (630)
T TIGR00643 390 LVMSATPIPRTLALTVYGDLDTSIIDELPPGRKPITTVLIKHDEK---DIVYEFIEEEI--AKGRQAYVVYPLIEESEKL 464 (630)
T ss_pred EEEeCCCCcHHHHHHhcCCcceeeeccCCCCCCceEEEEeCcchH---HHHHHHHHHHH--HhCCcEEEEEccccccccc
Confidence 99999986655442 22222 22 22344456777776654322 22222222221 2346899999976
Q ss_pred --HHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCc
Q 035699 529 --DQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAK 606 (633)
Q Consensus 529 --~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k 606 (633)
..++.+++.|.... +++.|..+||+|++.+|..+++.|..|..+|||||+++++|||||++++||+.+.++
T Consensus 465 ~~~~a~~~~~~L~~~~-------~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r 537 (630)
T TIGR00643 465 DLKAAEALYERLKKAF-------PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAER 537 (630)
T ss_pred hHHHHHHHHHHHHhhC-------CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCc
Confidence 45666777776542 468899999999999999999999999999999999999999999999999988876
Q ss_pred c
Q 035699 607 V 607 (633)
Q Consensus 607 ~ 607 (633)
.
T Consensus 538 ~ 538 (630)
T TIGR00643 538 F 538 (630)
T ss_pred C
Confidence 3
No 61
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.93 E-value=2.3e-25 Score=239.18 Aligned_cols=257 Identities=20% Similarity=0.218 Sum_probs=167.5
Q ss_pred eEEEeccCCChhhchHHHHHHHhcccc-CCeeeecchhHHHHHHHHHHHHHHhCCcccceEeeee------ec-----cc
Q 035699 347 VLVIVGETGSGKTTQIPQYLYEAGYTK-QGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSI------RF-----ED 414 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~Lle~~~~~-~gkilitqPrR~aA~qva~rva~e~g~~vg~~VGy~i------r~-----e~ 414 (633)
+|+|+||||||||++++++++...... .++++++.|++.+|.+++.++...+|..+|...|... .. +.
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 488999999999999999888653222 3499999999999999999999888765543222110 00 00
Q ss_pred c---------cCCCCcEEEeCchHHHHHHhcCC-----CCC--Cceeee-eeccc-----------------CCCccEEE
Q 035699 415 C---------TSDKTVLKYMTDGMLLREIVLEP-----SLE--SYSVLI-DLINY-----------------RPDLKLLI 460 (633)
Q Consensus 415 ~---------~s~~t~Iiv~TpGrLL~~l~~~~-----~L~--~~s~vI-di~~~-----------------rpdlklil 460 (633)
. ......|+++||++++..+..+. .+. .++++| |.+|. ..+.++++
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~~~~~~~i~ 160 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLKDNDVPILL 160 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEEE
Confidence 0 01236799999999998876521 111 225566 54432 23578999
Q ss_pred eecccCHHhHhhhhCCCCEEE----eCCeee-eE-EEEE--EcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHH
Q 035699 461 SSATLDAENFSDYFGSAPIFK----IPRRRY-HV-ELFY--TKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFE 532 (633)
Q Consensus 461 ~SAT~~~~~~s~~f~~~pii~----i~gr~~-pv-~~~y--~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie 532 (633)
||||++ +.+.+|+....... ++.... .. ...+ ......... ..+..++..+ ..++++||||+|++.++
T Consensus 161 ~SATlp-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~~--~~~~~~lVf~~t~~~~~ 236 (358)
T TIGR01587 161 MSATLP-KFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEI-SSLERLLEFI--KKGGKIAIIVNTVDRAQ 236 (358)
T ss_pred EecCch-HHHHHHHhcCCCcccccCCCCccccccccccceeeccccccCH-HHHHHHHHHh--hCCCeEEEEECCHHHHH
Confidence 999996 44555553322111 110000 00 0111 010001111 1122222222 24589999999999999
Q ss_pred HHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHH----HhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccc
Q 035699 533 TAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAK----IFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVK 608 (633)
Q Consensus 533 ~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~----i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~ 608 (633)
.+++.|.+.. +...+.++||+|++.+|.. +++.|+.|..+|||||+++++||||| +++||+...|- .
T Consensus 237 ~~~~~L~~~~-------~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~~-~ 307 (358)
T TIGR01587 237 EFYQQLKENA-------PEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAPI-D 307 (358)
T ss_pred HHHHHHHhhc-------CCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCCH-H
Confidence 9999998752 2457999999999999976 48899999999999999999999996 88888876663 3
Q ss_pred cccCCCCc
Q 035699 609 SYNPKTGM 616 (633)
Q Consensus 609 ~yd~~~g~ 616 (633)
+|-++.|.
T Consensus 308 ~~iqr~GR 315 (358)
T TIGR01587 308 SLIQRLGR 315 (358)
T ss_pred HHHHHhcc
Confidence 45555544
No 62
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.93 E-value=1.4e-24 Score=261.93 Aligned_cols=259 Identities=17% Similarity=0.155 Sum_probs=175.4
Q ss_pred HccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHh---CCcc
Q 035699 326 RKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEM---GVKL 402 (633)
Q Consensus 326 r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~---g~~v 402 (633)
......+++|...++.+..+++++++||||||||+ |.+++......++.+++|+.|||+||.|++..+.... |...
T Consensus 74 ~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~ 152 (1171)
T TIGR01054 74 AVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGT 152 (1171)
T ss_pred hcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCce
Confidence 34557788999999999999999999999999997 3344333222334589999999999999988775543 3221
Q ss_pred cceEeeeeecc---c------c-cCCCCcEEEeCchHHHHHHhcCCCCCCceeee-eec-----------------ccC-
Q 035699 403 GHEVGYSIRFE---D------C-TSDKTVLKYMTDGMLLREIVLEPSLESYSVLI-DLI-----------------NYR- 453 (633)
Q Consensus 403 g~~VGy~ir~e---~------~-~s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-di~-----------------~~r- 453 (633)
. .+|+...+. . . ....++|+|+|||+|.+.+..-.. +++++| |.+ .+.
T Consensus 153 ~-~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~--~~~~iVvDEaD~~L~~~k~vd~il~llGF~~ 229 (1171)
T TIGR01054 153 V-NIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGP--KFDFIFVDDVDALLKASKNVDKLLKLLGFSE 229 (1171)
T ss_pred e-eeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcC--CCCEEEEeChHhhhhccccHHHHHHHcCCCH
Confidence 1 122111111 0 1 123589999999999988764221 777877 111 111
Q ss_pred ---------------------------------CCcc--EEEeecccCHHhHh-hhhCCCCEEEeCCee---eeEEEEEE
Q 035699 454 ---------------------------------PDLK--LLISSATLDAENFS-DYFGSAPIFKIPRRR---YHVELFYT 494 (633)
Q Consensus 454 ---------------------------------pdlk--lil~SAT~~~~~~s-~~f~~~pii~i~gr~---~pv~~~y~ 494 (633)
.+.+ +++||||+...... .+|.+...+.+.... ..+...|.
T Consensus 230 e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll~~~v~~~~~~~r~I~~~~~ 309 (1171)
T TIGR01054 230 ELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELLGFEVGGGSDTLRNVVDVYV 309 (1171)
T ss_pred HHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccccceEecCccccccceEEEEE
Confidence 1223 56789995332222 344443334443222 23445555
Q ss_pred cCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcH---HHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhC
Q 035699 495 KAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQ---DQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFE 571 (633)
Q Consensus 495 ~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~---~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~ 571 (633)
.... .. ..+..++... .+.+||||+++ +.++.+++.|... ++.+..+||+|++ .+++
T Consensus 310 ~~~~--~~----~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~---------g~~a~~lhg~~~~----~~l~ 369 (1171)
T TIGR01054 310 EDED--LK----ETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENH---------GVKAVAYHATKPK----EDYE 369 (1171)
T ss_pred eccc--HH----HHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhC---------CceEEEEeCCCCH----HHHH
Confidence 3332 11 1233333332 35799999999 9999999999874 7999999999974 6889
Q ss_pred CCCCCCeeEEEe----CCccccCCCCCC-ccEEEeCCCCccc
Q 035699 572 PTPEGARKVVLA----TNIAETSLTIDG-IKYVIDPGFAKVK 608 (633)
Q Consensus 572 ~f~~g~rkVLvA----TdIAerGLdIp~-V~~VID~G~~k~~ 608 (633)
.|+.|..+|||| ||+|+||||||+ |+||||+|+|+..
T Consensus 370 ~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~~ 411 (1171)
T TIGR01054 370 KFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKFK 411 (1171)
T ss_pred HHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCEE
Confidence 999999999999 599999999999 8999999999874
No 63
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.93 E-value=1.4e-24 Score=249.59 Aligned_cols=287 Identities=19% Similarity=0.195 Sum_probs=209.4
Q ss_pred ChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhcccc------CC-eeeecchhHHHHHHHHHHHH---HHhCC
Q 035699 331 IYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTK------QG-KIGCTQLRRVAAMSVAARVS---QEMGV 400 (633)
Q Consensus 331 i~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~------~g-kilitqPrR~aA~qva~rva---~e~g~ 400 (633)
..+.|...++.+.+|.+++|+||||||||.+..+|++...... +| .++++.|-|+|+..+-.++- ..+|.
T Consensus 23 ~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G~ 102 (814)
T COG1201 23 LTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLRELGI 102 (814)
T ss_pred CCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHcCC
Confidence 3455666678888999999999999999998777776654433 22 78899999999999877663 45566
Q ss_pred cccceEeeeeeccccc--CCCCcEEEeCchHHHHHHhcCC---CCCCceeee-eecc--------------------cCC
Q 035699 401 KLGHEVGYSIRFEDCT--SDKTVLKYMTDGMLLREIVLEP---SLESYSVLI-DLIN--------------------YRP 454 (633)
Q Consensus 401 ~vg~~VGy~ir~e~~~--s~~t~Iiv~TpGrLL~~l~~~~---~L~~~s~vI-di~~--------------------~rp 454 (633)
.+....|.....+... ...++|++.||+.|--++.+.. .|.++.+|| |.+| .-+
T Consensus 103 ~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~ 182 (814)
T COG1201 103 EVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLERLRELAG 182 (814)
T ss_pred ccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHhhCc
Confidence 5533333322222221 3458999999999987665432 588898888 3332 224
Q ss_pred CccEEEeeccc-CHHhHhhhhCC----CCEEEeCCeee-eEEEEEEcCCc---hhHHHHHHHHHHHHHhcCCCCCEEEEc
Q 035699 455 DLKLLISSATL-DAENFSDYFGS----APIFKIPRRRY-HVELFYTKAPE---ADYIEAAIVTALQIHVNEPIGDILVFL 525 (633)
Q Consensus 455 dlklil~SAT~-~~~~~s~~f~~----~pii~i~gr~~-pv~~~y~~~~~---~~yl~~~v~~l~~i~~~~~~g~iLVFl 525 (633)
++|.|++|||+ +.+..++|+.+ |.|+.+++... .+++....... ..-+..++..+..+..++ ..+|||+
T Consensus 183 ~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~--~ttLIF~ 260 (814)
T COG1201 183 DFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYERIAELVKKH--RTTLIFT 260 (814)
T ss_pred ccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHHHHHHHHHhhc--CcEEEEE
Confidence 78999999999 78899999854 34666665432 23333222110 011233455566555444 4899999
Q ss_pred CcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCC
Q 035699 526 TGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFA 605 (633)
Q Consensus 526 ~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~ 605 (633)
||+..+|.++..|.+.. ...+..+||.++.++|..+.+.|++|..++||||.-+|-||||.+|+.||..|-|
T Consensus 261 NTR~~aE~l~~~L~~~~--------~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP 332 (814)
T COG1201 261 NTRSGAERLAFRLKKLG--------PDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSP 332 (814)
T ss_pred eChHHHHHHHHHHHHhc--------CCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCc
Confidence 99999999999999863 3789999999999999999999999999999999999999999999999999999
Q ss_pred ccc-cccCCCCceeeeeeeccHH
Q 035699 606 KVK-SYNPKTGMESLLVNPISKA 627 (633)
Q Consensus 606 k~~-~yd~~~g~~~l~~~~iSka 627 (633)
++- .+--+.|.+-....-+||+
T Consensus 333 ~sV~r~lQRiGRsgHr~~~~Skg 355 (814)
T COG1201 333 KSVNRFLQRIGRAGHRLGEVSKG 355 (814)
T ss_pred HHHHHHhHhccccccccCCcccE
Confidence 873 3555666665555555543
No 64
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.92 E-value=7.6e-25 Score=250.54 Aligned_cols=266 Identities=15% Similarity=0.126 Sum_probs=185.5
Q ss_pred ChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccceEeeee
Q 035699 331 IYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSI 410 (633)
Q Consensus 331 i~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~VGy~i 410 (633)
..++|.++++++.+++++++++|||||||+++..+.+. .+|.++|+.|++.|+.+....+.. +|..+... +..+
T Consensus 14 fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~----~~g~~lVisPl~sL~~dq~~~l~~-~gi~~~~~-~s~~ 87 (591)
T TIGR01389 14 FRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALL----LKGLTVVISPLISLMKDQVDQLRA-AGVAAAYL-NSTL 87 (591)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHH----cCCcEEEEcCCHHHHHHHHHHHHH-cCCcEEEE-eCCC
Confidence 46789999999999999999999999999987666553 245788899999999888776644 55543211 1111
Q ss_pred eccc-------ccCCCCcEEEeCchHHHHHH-hcCCCCCCceeee-eeccc---------------------CCCccEEE
Q 035699 411 RFED-------CTSDKTVLKYMTDGMLLREI-VLEPSLESYSVLI-DLINY---------------------RPDLKLLI 460 (633)
Q Consensus 411 r~e~-------~~s~~t~Iiv~TpGrLL~~l-~~~~~L~~~s~vI-di~~~---------------------rpdlklil 460 (633)
.... .......|+|+||++|.... .......++++|| |.+|. .|...+++
T Consensus 88 ~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~vi~ 167 (591)
T TIGR01389 88 SAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPRIA 167 (591)
T ss_pred CHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCCCEEE
Confidence 1111 11345789999999997432 2222456778777 55442 24456899
Q ss_pred eecccCHHh---HhhhhC-CCCEEEeCCeeeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHH
Q 035699 461 SSATLDAEN---FSDYFG-SAPIFKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEE 536 (633)
Q Consensus 461 ~SAT~~~~~---~s~~f~-~~pii~i~gr~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~ 536 (633)
+|||++... +..++. ..+.+.+.+... ..++|...+..+. ...+..++.....++.||||+|+..++.+++
T Consensus 168 lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r-~nl~~~v~~~~~~----~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~ 242 (591)
T TIGR01389 168 LTATADAETRQDIRELLRLADANEFITSFDR-PNLRFSVVKKNNK----QKFLLDYLKKHRGQSGIIYASSRKKVEELAE 242 (591)
T ss_pred EEeCCCHHHHHHHHHHcCCCCCCeEecCCCC-CCcEEEEEeCCCH----HHHHHHHHHhcCCCCEEEEECcHHHHHHHHH
Confidence 999996543 444443 222222222111 1223322222221 2233333444446789999999999999999
Q ss_pred HHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccc-cccCCCC
Q 035699 537 ILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVK-SYNPKTG 615 (633)
Q Consensus 537 ~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~-~yd~~~g 615 (633)
.|... ++.+.++||+|++++|..+++.|..|...|||||+++++|||+|+|++||++++|+.. .|-.+.|
T Consensus 243 ~L~~~---------g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~G 313 (591)
T TIGR01389 243 RLESQ---------GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAG 313 (591)
T ss_pred HHHhC---------CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhc
Confidence 99763 7889999999999999999999999999999999999999999999999999999864 3655544
Q ss_pred c
Q 035699 616 M 616 (633)
Q Consensus 616 ~ 616 (633)
.
T Consensus 314 R 314 (591)
T TIGR01389 314 R 314 (591)
T ss_pred c
Confidence 4
No 65
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.92 E-value=1.4e-25 Score=244.00 Aligned_cols=279 Identities=15% Similarity=0.193 Sum_probs=214.4
Q ss_pred cCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCC--eeeecchhHHHHHHHHHHHHHHh----CCc
Q 035699 328 TLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQG--KIGCTQLRRVAAMSVAARVSQEM----GVK 401 (633)
Q Consensus 328 ~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~g--kilitqPrR~aA~qva~rva~e~----g~~ 401 (633)
.+|. ++|...|+++..+=++||+|..|+|||..|.....+....... .++|+.|||++|.||...+.... |..
T Consensus 46 ~~pt-kiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~ 124 (980)
T KOG4284|consen 46 ALPT-KIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGAR 124 (980)
T ss_pred cCCC-chhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCcc
Confidence 3554 5677888899999899999999999998877766665433332 89999999999999987665432 333
Q ss_pred ccceEeeeeeccccc-CCCCcEEEeCchHHHHHHhcCC-CCCCceeee------------------eecccCC-CccEEE
Q 035699 402 LGHEVGYSIRFEDCT-SDKTVLKYMTDGMLLREIVLEP-SLESYSVLI------------------DLINYRP-DLKLLI 460 (633)
Q Consensus 402 vg~~VGy~ir~e~~~-s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI------------------di~~~rp-dlklil 460 (633)
....+|..---.+.+ -.+++|+|||||||++++..+. +.+++..+| -|+.-.| ..|++.
T Consensus 125 csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a 204 (980)
T KOG4284|consen 125 CSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQIRQVAA 204 (980)
T ss_pred eEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcchhheeeE
Confidence 333344222222222 3578999999999999987766 889999988 1233445 457888
Q ss_pred eecccCH---HhHhhhhCCCCEEEeCCe---eeeEEEEEEcCCchhH----HHHHHHHHHHHHhcCCCCCEEEEcCcHHH
Q 035699 461 SSATLDA---ENFSDYFGSAPIFKIPRR---RYHVELFYTKAPEADY----IEAAIVTALQIHVNEPIGDILVFLTGQDQ 530 (633)
Q Consensus 461 ~SAT~~~---~~~s~~f~~~pii~i~gr---~~pv~~~y~~~~~~~y----l~~~v~~l~~i~~~~~~g~iLVFl~t~~e 530 (633)
||||.+. +.|++|+.++-++....+ .+-+++++...+..+. ....+..+-+++...|--+.||||+....
T Consensus 205 ~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sr 284 (980)
T KOG4284|consen 205 FSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISR 284 (980)
T ss_pred EeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhh
Confidence 9999953 679999998888877553 3556677665444332 22344555566666777899999999999
Q ss_pred HHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCcc-cc
Q 035699 531 FETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKV-KS 609 (633)
Q Consensus 531 ie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~-~~ 609 (633)
++-++.+|.. .++.+.+|.|+|.|.+|..+|...+.-..+|||+||+.+||||-|+|++|||.+-|-. -+
T Consensus 285 a~~~a~~L~s---------sG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eT 355 (980)
T KOG4284|consen 285 AEPIATHLKS---------SGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEET 355 (980)
T ss_pred hhHHHHHhhc---------cCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHH
Confidence 9999999977 4899999999999999999999999999999999999999999999999999999976 45
Q ss_pred ccCCCCc
Q 035699 610 YNPKTGM 616 (633)
Q Consensus 610 yd~~~g~ 616 (633)
|=|+.|.
T Consensus 356 Y~HRIGR 362 (980)
T KOG4284|consen 356 YFHRIGR 362 (980)
T ss_pred HHHHhhh
Confidence 8887764
No 66
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.92 E-value=2.4e-23 Score=224.24 Aligned_cols=263 Identities=15% Similarity=0.182 Sum_probs=173.5
Q ss_pred HHHHHHHHHHcCC--eEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhC-------Ccccc
Q 035699 334 FREELLQAVSEYP--VLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMG-------VKLGH 404 (633)
Q Consensus 334 ~q~~il~al~~~~--~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g-------~~vg~ 404 (633)
+|.++++++.++. +++++||||||||.++..+++.. .++++++.|+++++.+.++++...+. ..++.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~----~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~ 76 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG----ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLH 76 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc----CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEE
Confidence 3677888888775 58899999999999887776642 34789999999999999888776652 22221
Q ss_pred eEeeeee--------------ccc--------ccCCCCcEEEeCchHHHHHHhc---CC------CCCCceeee-eeccc
Q 035699 405 EVGYSIR--------------FED--------CTSDKTVLKYMTDGMLLREIVL---EP------SLESYSVLI-DLINY 452 (633)
Q Consensus 405 ~VGy~ir--------------~e~--------~~s~~t~Iiv~TpGrLL~~l~~---~~------~L~~~s~vI-di~~~ 452 (633)
..|-... ++. .....+.|+++||.+|..++.. .+ .+.+++++| |.+|.
T Consensus 77 ~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~ 156 (357)
T TIGR03158 77 VSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHL 156 (357)
T ss_pred ecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccc
Confidence 2221000 000 0012467788888888755432 22 257888888 55443
Q ss_pred CC----------------------CccEEEeecccCHH---hHhhh-hCCCCEEEeCCe--ee-----------------
Q 035699 453 RP----------------------DLKLLISSATLDAE---NFSDY-FGSAPIFKIPRR--RY----------------- 487 (633)
Q Consensus 453 rp----------------------dlklil~SAT~~~~---~~s~~-f~~~pii~i~gr--~~----------------- 487 (633)
.. ..+++++|||++.. .+... +.+.|+..++|. .+
T Consensus 157 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~ 236 (357)
T TIGR03158 157 YDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRP 236 (357)
T ss_pred cCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccce
Confidence 21 35899999999754 23332 235677777776 11
Q ss_pred ---eEEEEEEcCCc--hhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCC
Q 035699 488 ---HVELFYTKAPE--ADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLP 562 (633)
Q Consensus 488 ---pv~~~y~~~~~--~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~ 562 (633)
++++.+.+.+. ...+......+.+.+...+.+++||||+|+..++.++..|+... .++.+..+||.++
T Consensus 237 ~~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~-------~~~~~~~l~g~~~ 309 (357)
T TIGR03158 237 VLPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQG-------LGDDIGRITGFAP 309 (357)
T ss_pred eccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhC-------CCceEEeeecCCC
Confidence 35555554221 12222223333444434456799999999999999999998731 1467889999999
Q ss_pred HHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCc-cccccCCCCc
Q 035699 563 TELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAK-VKSYNPKTGM 616 (633)
Q Consensus 563 ~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k-~~~yd~~~g~ 616 (633)
+..|.++. ...||||||+++||||||++ +|| +. |. ...|-++.|.
T Consensus 310 ~~~R~~~~------~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR 355 (357)
T TIGR03158 310 KKDRERAM------QFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGR 355 (357)
T ss_pred HHHHHHhc------cCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhccc
Confidence 99998765 46799999999999999987 555 23 33 3457777764
No 67
>PRK14701 reverse gyrase; Provisional
Probab=99.91 E-value=1.7e-23 Score=257.43 Aligned_cols=257 Identities=14% Similarity=0.118 Sum_probs=174.1
Q ss_pred cCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcc--cce
Q 035699 328 TLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKL--GHE 405 (633)
Q Consensus 328 ~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~v--g~~ 405 (633)
....++.|..+++.+..+++++++||||||||+. .+++......++.+++|+.||++||.|++..+.... ... +..
T Consensus 77 G~~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~-~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~-~~~~~~v~ 154 (1638)
T PRK14701 77 GFEFWSIQKTWAKRILRGKSFSIVAPTGMGKSTF-GAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFC-EKANLDVR 154 (1638)
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHH-HHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHH-hhcCCcee
Confidence 3467788999999999999999999999999983 332221111233489999999999999988775532 222 222
Q ss_pred Eeeeeecccc----------cCCCCcEEEeCchHHHHHHhcCCCCCCceeee-eecc-----------------c-----
Q 035699 406 VGYSIRFEDC----------TSDKTVLKYMTDGMLLREIVLEPSLESYSVLI-DLIN-----------------Y----- 452 (633)
Q Consensus 406 VGy~ir~e~~----------~s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-di~~-----------------~----- 452 (633)
+.+...+... .+..++|+|+|||+|.+.+..... .+++++| |.++ |
T Consensus 155 v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~-~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~ 233 (1638)
T PRK14701 155 LVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKH-LKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEII 233 (1638)
T ss_pred EEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhh-CCCCEEEEECceeccccccccchhhhcCCChHHHH
Confidence 2222111110 123589999999999987653222 5667766 1111 1
Q ss_pred -------------------------------CC-Ccc-EEEeecccCH-HhHhhhhCCCCEEEeCCeee---eEEEEEEc
Q 035699 453 -------------------------------RP-DLK-LLISSATLDA-ENFSDYFGSAPIFKIPRRRY---HVELFYTK 495 (633)
Q Consensus 453 -------------------------------rp-dlk-lil~SAT~~~-~~~s~~f~~~pii~i~gr~~---pv~~~y~~ 495 (633)
.| ..+ ++++|||++. .....+|.+.-.|.+..... .+.+.|..
T Consensus 234 ~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l~f~v~~~~~~lr~i~~~yi~ 313 (1638)
T PRK14701 234 EKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELLGFEVGSGRSALRNIVDVYLN 313 (1638)
T ss_pred HHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCeEEEecCCCCCCCCcEEEEEE
Confidence 12 223 5678999975 23445665544555533221 24455543
Q ss_pred CCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHH---HHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCC
Q 035699 496 APEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQF---ETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEP 572 (633)
Q Consensus 496 ~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~ei---e~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~ 572 (633)
...... ..++.++... ....||||+++..+ +.+++.|... ++.+.++||+ |..+++.
T Consensus 314 ~~~~~k-----~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~---------Gi~a~~~h~~-----R~~~l~~ 373 (1638)
T PRK14701 314 PEKIIK-----EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLED---------GFKIELVSAK-----NKKGFDL 373 (1638)
T ss_pred CCHHHH-----HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHC---------CCeEEEecch-----HHHHHHH
Confidence 322221 1333444333 35789999998865 7889999874 8999999996 8889999
Q ss_pred CCCCCeeEEEeC----CccccCCCCCC-ccEEEeCCCCcc
Q 035699 573 TPEGARKVVLAT----NIAETSLTIDG-IKYVIDPGFAKV 607 (633)
Q Consensus 573 f~~g~rkVLvAT----dIAerGLdIp~-V~~VID~G~~k~ 607 (633)
|..|...||||| |+|+||||+|+ |.|||++|+|+.
T Consensus 374 F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~ 413 (1638)
T PRK14701 374 FEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKF 413 (1638)
T ss_pred HHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCC
Confidence 999999999999 69999999999 999999999994
No 68
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=2.6e-24 Score=234.14 Aligned_cols=277 Identities=17% Similarity=0.153 Sum_probs=201.0
Q ss_pred CCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhcc--c----cCC-eeeecchhHHHHHHHHHHHHHHhC-C
Q 035699 329 LPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGY--T----KQG-KIGCTQLRRVAAMSVAARVSQEMG-V 400 (633)
Q Consensus 329 LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~--~----~~g-kilitqPrR~aA~qva~rva~e~g-~ 400 (633)
-|+.. |...++.+..+.+++.|||||||||.++..|++.... . ..| +++|+.|+|+||.|++..+.+.-- .
T Consensus 158 ~Pt~i-q~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~ 236 (593)
T KOG0344|consen 158 EPTPI-QKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDE 236 (593)
T ss_pred CCCcc-cchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCC
Confidence 34443 4467788889999999999999999998777765432 1 223 899999999999999886654330 1
Q ss_pred cccc-eEe--eeeecccc----cCCCCcEEEeCchHHHHHHhcCC---CCCCceeee------------------eec--
Q 035699 401 KLGH-EVG--YSIRFEDC----TSDKTVLKYMTDGMLLREIVLEP---SLESYSVLI------------------DLI-- 450 (633)
Q Consensus 401 ~vg~-~VG--y~ir~e~~----~s~~t~Iiv~TpGrLL~~l~~~~---~L~~~s~vI------------------di~-- 450 (633)
..+. ..+ |....... ...+.+|++.||-+|...+...+ +|.++.++| +|+
T Consensus 237 ~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sa 316 (593)
T KOG0344|consen 237 GTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSA 316 (593)
T ss_pred CCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHH
Confidence 1111 111 11111111 12457899999999999998776 789999988 221
Q ss_pred ccCCCccEEEeeccc--CHHhHhhhhCCCCEEEeCCee----eeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEE
Q 035699 451 NYRPDLKLLISSATL--DAENFSDYFGSAPIFKIPRRR----YHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVF 524 (633)
Q Consensus 451 ~~rpdlklil~SAT~--~~~~~s~~f~~~pii~i~gr~----~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVF 524 (633)
...|++++=+||||+ .++.+++.....++..+-|.. ..|++....+.... .++..+.++....-+.++|||
T Consensus 317 c~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~---~K~lA~rq~v~~g~~PP~lIf 393 (593)
T KOG0344|consen 317 CQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEK---GKLLALRQLVASGFKPPVLIF 393 (593)
T ss_pred hcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecch---hHHHHHHHHHhccCCCCeEEE
Confidence 234788888999999 457888766555544443332 23444333332221 123344555555556789999
Q ss_pred cCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCC
Q 035699 525 LTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGF 604 (633)
Q Consensus 525 l~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~ 604 (633)
+.+.+.+..|++.|... +++.|-.+||..++.+|..+++.|+.|..+||||||+.+||||+-||++|||+++
T Consensus 394 VQs~eRak~L~~~L~~~--------~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~ 465 (593)
T KOG0344|consen 394 VQSKERAKQLFEELEIY--------DNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDF 465 (593)
T ss_pred EecHHHHHHHHHHhhhc--------cCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCC
Confidence 99999999999998522 5889999999999999999999999999999999999999999999999999999
Q ss_pred Cccc-cccCCCCce
Q 035699 605 AKVK-SYNPKTGME 617 (633)
Q Consensus 605 ~k~~-~yd~~~g~~ 617 (633)
|... +|-|+.|++
T Consensus 466 p~s~~syihrIGRt 479 (593)
T KOG0344|consen 466 PQSDLSYIHRIGRT 479 (593)
T ss_pred CchhHHHHHHhhcc
Confidence 9874 599988874
No 69
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=8.6e-24 Score=221.75 Aligned_cols=285 Identities=19% Similarity=0.188 Sum_probs=200.0
Q ss_pred HHHHHHHHHccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccc--cCC-eeeecchhHHHHHHHHHHH
Q 035699 318 ALEMLQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYT--KQG-KIGCTQLRRVAAMSVAARV 394 (633)
Q Consensus 318 ~~~~l~~~r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~--~~g-kilitqPrR~aA~qva~rv 394 (633)
.+..|.+.--.-|...+|+. ++.|+++.+++..|-||||||.++.+++.+.... +.| +.+++.|+|+||+|+.+-+
T Consensus 32 v~raI~kkg~~~ptpiqRKT-ipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvv 110 (529)
T KOG0337|consen 32 VLRAIHKKGFNTPTPIQRKT-IPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVV 110 (529)
T ss_pred HHHHHHHhhcCCCCchhccc-ccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHH
Confidence 45556444445577666655 5778888889999999999999999998876433 234 9999999999999998844
Q ss_pred HHHhCCccc----ceEeeeeeccc--ccCCCCcEEEeCchHHHHHHhcC-CCCCCceeee-----------------eec
Q 035699 395 SQEMGVKLG----HEVGYSIRFED--CTSDKTVLKYMTDGMLLREIVLE-PSLESYSVLI-----------------DLI 450 (633)
Q Consensus 395 a~e~g~~vg----~~VGy~ir~e~--~~s~~t~Iiv~TpGrLL~~l~~~-~~L~~~s~vI-----------------di~ 450 (633)
+.+|--.+ ..||+.-..+. ....+++||++|||+++.....- -.|+.+.+|| .++
T Consensus 111 -kdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemgfqeql~e~l 189 (529)
T KOG0337|consen 111 -KDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMGFQEQLHEIL 189 (529)
T ss_pred -HHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhhhhHHHHHHHH
Confidence 55543332 23443221111 12467999999999999664332 3699999999 233
Q ss_pred ccCC-CccEEEeecccCHH--hHhhh-hCCCCEEEe--CCee-eeEEEEEEcCCchhHHHHHHHHHHHHHhcC-CCCCEE
Q 035699 451 NYRP-DLKLLISSATLDAE--NFSDY-FGSAPIFKI--PRRR-YHVELFYTKAPEADYIEAAIVTALQIHVNE-PIGDIL 522 (633)
Q Consensus 451 ~~rp-dlklil~SAT~~~~--~~s~~-f~~~pii~i--~gr~-~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~-~~g~iL 522 (633)
...| +.|+++||||+.-. .|.+- +.++..+.+ ..+- -.++..+...+.++. ...++.++... .+.+.+
T Consensus 190 ~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K----~aaLl~il~~~~~~~~t~ 265 (529)
T KOG0337|consen 190 SRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEK----EAALLSILGGRIKDKQTI 265 (529)
T ss_pred HhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHH----HHHHHHHHhcccccccee
Confidence 3334 67999999999543 34432 222323332 1111 112222333333333 22344443332 235799
Q ss_pred EEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeC
Q 035699 523 VFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDP 602 (633)
Q Consensus 523 VFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~ 602 (633)
||++|...|+.+...|... ++.+-.+||.|.+..|..-+..|..+...++|.||+|+||+|||..+-|||.
T Consensus 266 vf~~tk~hve~~~~ll~~~---------g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnviny 336 (529)
T KOG0337|consen 266 VFVATKHHVEYVRGLLRDF---------GGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINY 336 (529)
T ss_pred EEecccchHHHHHHHHHhc---------CCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccc
Confidence 9999999999999999874 7788899999999999999999999999999999999999999999999999
Q ss_pred CCC-ccccccCCCCce
Q 035699 603 GFA-KVKSYNPKTGME 617 (633)
Q Consensus 603 G~~-k~~~yd~~~g~~ 617 (633)
.|| ....|.++.|..
T Consensus 337 d~p~~~klFvhRVgr~ 352 (529)
T KOG0337|consen 337 DFPPDDKLFVHRVGRV 352 (529)
T ss_pred cCCCCCceEEEEecch
Confidence 995 556688877654
No 70
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.88 E-value=5.3e-22 Score=230.37 Aligned_cols=276 Identities=20% Similarity=0.232 Sum_probs=193.6
Q ss_pred hHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHH--HHhCCcccceEe-e
Q 035699 332 YPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVS--QEMGVKLGHEVG-Y 408 (633)
Q Consensus 332 ~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva--~e~g~~vg~~VG-y 408 (633)
.++|..+.+.+.++.|++|++|||||||......++......++++++++|+|.||.+.+..+. +.+|.+++..+| |
T Consensus 34 ~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~TgD~ 113 (766)
T COG1204 34 NPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVGISTGDY 113 (766)
T ss_pred HHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEecCCc
Confidence 4577888888888899999999999999877777666644445699999999999999999888 567777665554 2
Q ss_pred eeecccccCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eecc--------------------cCCCccEEEeeccc-
Q 035699 409 SIRFEDCTSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLIN--------------------YRPDLKLLISSATL- 465 (633)
Q Consensus 409 ~ir~e~~~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~~--------------------~rpdlklil~SAT~- 465 (633)
.... ..-.+++|+|+||..+...+.+.+ .+..+++|| |.+| ..+.++++.+|||+
T Consensus 114 ~~~~--~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATlp 191 (766)
T COG1204 114 DLDD--ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSATLP 191 (766)
T ss_pred ccch--hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCcceEEEEEeeecC
Confidence 1111 112578999999999998887777 578889888 4433 23447999999999
Q ss_pred CHHhHhhhhCCCCEEEeCCeee------e--EEEEEEcCCch----hHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHH
Q 035699 466 DAENFSDYFGSAPIFKIPRRRY------H--VELFYTKAPEA----DYIEAAIVTALQIHVNEPIGDILVFLTGQDQFET 533 (633)
Q Consensus 466 ~~~~~s~~f~~~pii~i~gr~~------p--v~~~y~~~~~~----~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~ 533 (633)
|+..++.|++..++ ....+.. | ...++...... ..-..++..+...+ ...|++||||+++.....
T Consensus 192 N~~evA~wL~a~~~-~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~--~~~~qvLvFv~sR~~a~~ 268 (766)
T COG1204 192 NAEEVADWLNAKLV-ESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESL--AEGGQVLVFVHSRKEAEK 268 (766)
T ss_pred CHHHHHHHhCCccc-ccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHH--hcCCeEEEEEecCchHHH
Confidence 89999999976655 2211111 1 11111111110 01111222222222 346899999999999999
Q ss_pred HHHHHHHhhcc---------cCC---CCC----------------ceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCC
Q 035699 534 AEEILKQRTRG---------LGT---KIA----------------ELIICPIYGNLPTELQAKIFEPTPEGARKVVLATN 585 (633)
Q Consensus 534 l~~~L~~~~~~---------l~~---~~~----------------~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATd 585 (633)
.+..|...... +.. +.. ...+..+|++|+.+.|.-+...|+.|..+||+||+
T Consensus 269 ~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~Tp 348 (766)
T COG1204 269 TAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTP 348 (766)
T ss_pred HHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEech
Confidence 99999842111 000 000 12366799999999999999999999999999999
Q ss_pred ccccCCCCCCccEEEeCCCCccccccCCCCc
Q 035699 586 IAETSLTIDGIKYVIDPGFAKVKSYNPKTGM 616 (633)
Q Consensus 586 IAerGLdIp~V~~VID~G~~k~~~yd~~~g~ 616 (633)
.++.|++.|.=.+||- | ...|||..|+
T Consensus 349 TLA~GVNLPA~~VIIk-~---~~~y~~~~g~ 375 (766)
T COG1204 349 TLAAGVNLPARTVIIK-D---TRRYDPKGGI 375 (766)
T ss_pred HHhhhcCCcceEEEEe-e---eEEEcCCCCe
Confidence 9999999996666663 2 3458875553
No 71
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.87 E-value=6.9e-21 Score=218.35 Aligned_cols=269 Identities=18% Similarity=0.210 Sum_probs=186.4
Q ss_pred HccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHH---HhCCcc
Q 035699 326 RKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQ---EMGVKL 402 (633)
Q Consensus 326 r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~---e~g~~v 402 (633)
++.|-+.|++-+++.++.-++..|+..+||+|||+++..+++..... +..++|+.|++.||.+.+..+.. .+|..
T Consensus 64 ~R~lglrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~-g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLs- 141 (762)
T TIGR03714 64 KRVLGMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT-GKGAMLVTTNDYLAKRDAEEMGPVYEWLGLT- 141 (762)
T ss_pred HhhcCCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc-CCceEEeCCCHHHHHHHHHHHHHHHhhcCCc-
Confidence 56677788888888888888888999999999999877776554443 33699999999999988875533 34554
Q ss_pred cceEeeeeec---c------cccCCCCcEEEeCchHH-HHHHhc----C---CCCCCceeee-ee---------------
Q 035699 403 GHEVGYSIRF---E------DCTSDKTVLKYMTDGML-LREIVL----E---PSLESYSVLI-DL--------------- 449 (633)
Q Consensus 403 g~~VGy~ir~---e------~~~s~~t~Iiv~TpGrL-L~~l~~----~---~~L~~~s~vI-di--------------- 449 (633)
||..... . .....+++|+|+|||+| .+.|.. . ..+..+.++| |.
T Consensus 142 ---v~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartplii 218 (762)
T TIGR03714 142 ---VSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVI 218 (762)
T ss_pred ---EEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeee
Confidence 4432221 0 11124689999999999 444421 1 2356677666 00
Q ss_pred --------------------------------------------------------------------------------
Q 035699 450 -------------------------------------------------------------------------------- 449 (633)
Q Consensus 450 -------------------------------------------------------------------------------- 449 (633)
T Consensus 219 sg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d 298 (762)
T TIGR03714 219 SGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRN 298 (762)
T ss_pred eCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcC
Confidence
Q ss_pred ------------c-----------------c--------------------------cCCCccEEEeecccC--HHhHhh
Q 035699 450 ------------I-----------------N--------------------------YRPDLKLLISSATLD--AENFSD 472 (633)
Q Consensus 450 ------------~-----------------~--------------------------~rpdlklil~SAT~~--~~~~s~ 472 (633)
. | |+-=.++..|+.|.. .+.|.+
T Consensus 299 ~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~ 378 (762)
T TIGR03714 299 KDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIE 378 (762)
T ss_pred CceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHH
Confidence 0 0 000014556666652 234444
Q ss_pred hhCCCCEEEeCCeeeeE------EEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccC
Q 035699 473 YFGSAPIFKIPRRRYHV------ELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLG 546 (633)
Q Consensus 473 ~f~~~pii~i~gr~~pv------~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~ 546 (633)
.+ +-+++.||... |+ +..|. .....+.+.+..+.+.|. ...++||||+|+..++.+...|...
T Consensus 379 iY-~l~v~~IPt~k-p~~r~d~~d~i~~--~~~~K~~ai~~~i~~~~~--~~~pvLIft~s~~~se~ls~~L~~~----- 447 (762)
T TIGR03714 379 TY-SLSVVKIPTNK-PIIRIDYPDKIYA--TLPEKLMATLEDVKEYHE--TGQPVLLITGSVEMSEIYSELLLRE----- 447 (762)
T ss_pred Hh-CCCEEEcCCCC-CeeeeeCCCeEEE--CHHHHHHHHHHHHHHHhh--CCCCEEEEECcHHHHHHHHHHHHHC-----
Confidence 33 45566666432 21 11121 223445555555555543 3468999999999999999999884
Q ss_pred CCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCC---------CccEEEeCCCCccccccCCCCc
Q 035699 547 TKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTID---------GIKYVIDPGFAKVKSYNPKTGM 616 (633)
Q Consensus 547 ~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp---------~V~~VID~G~~k~~~yd~~~g~ 616 (633)
++.+..+||++.+.++..+...+.+| .|+||||+|+||+||+ |+.+||++..|....++++.|.
T Consensus 448 ----gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid~qr~GR 520 (762)
T TIGR03714 448 ----GIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVDLQLRGR 520 (762)
T ss_pred ----CCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHHHHhhhc
Confidence 78899999999999999999888888 6999999999999999 9999999999988777777665
No 72
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.87 E-value=1e-20 Score=212.58 Aligned_cols=273 Identities=12% Similarity=0.044 Sum_probs=178.2
Q ss_pred cCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccceEe
Q 035699 328 TLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVG 407 (633)
Q Consensus 328 ~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~VG 407 (633)
.+...++|.+.+..+..+...++++|||||||..++..+....-...++++|++||++|+.|+..++.+......+ .++
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~-~~~ 190 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPRE-AMH 190 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhcccccc-cee
Confidence 3677888998888888888889999999999986543322111112338999999999999999988764432221 121
Q ss_pred eeeecccccCCCCcEEEeCchHHHHHHhcCCCCCCceeee-eeccc------------CC-CccEEEeecccCHH---h-
Q 035699 408 YSIRFEDCTSDKTVLKYMTDGMLLREIVLEPSLESYSVLI-DLINY------------RP-DLKLLISSATLDAE---N- 469 (633)
Q Consensus 408 y~ir~e~~~s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-di~~~------------rp-dlklil~SAT~~~~---~- 469 (633)
....+. ......+|+|+||+.|.+.. ...+.++++|| |.+|. .| ..++++||||+... .
T Consensus 191 ~i~~g~-~~~~~~~I~VaT~qsl~~~~--~~~~~~~~~iIvDEaH~~~~~~~~~il~~~~~~~~~lGLTATp~~~~~~~~ 267 (501)
T PHA02558 191 KIYSGT-AKDTDAPIVVSTWQSAVKQP--KEWFDQFGMVIVDECHLFTGKSLTSIITKLDNCKFKFGLTGSLRDGKANIL 267 (501)
T ss_pred EEecCc-ccCCCCCEEEeeHHHHhhch--hhhccccCEEEEEchhcccchhHHHHHHhhhccceEEEEeccCCCccccHH
Confidence 111111 11235789999999998653 22578899988 55442 22 34689999999421 1
Q ss_pred -HhhhhCCCCEEEeC-------CeeeeEEEE--EEcCCc--------hhHHH------------HHHHHHHHHHhcCCCC
Q 035699 470 -FSDYFGSAPIFKIP-------RRRYHVELF--YTKAPE--------ADYIE------------AAIVTALQIHVNEPIG 519 (633)
Q Consensus 470 -~s~~f~~~pii~i~-------gr~~pv~~~--y~~~~~--------~~yl~------------~~v~~l~~i~~~~~~g 519 (633)
+..+|++ ....+. |...++.+. +...+. .+|-. ..+..+...+. ...+
T Consensus 268 ~~~~~fG~-i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~-~~~~ 345 (501)
T PHA02558 268 QYVGLFGD-IFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLA-KKGE 345 (501)
T ss_pred HHHHhhCC-ceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHH-hcCC
Confidence 2234432 222211 111111111 111110 11100 11111222222 2346
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeC-CccccCCCCCCccE
Q 035699 520 DILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLAT-NIAETSLTIDGIKY 598 (633)
Q Consensus 520 ~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvAT-dIAerGLdIp~V~~ 598 (633)
++|||++..+.++.+++.|... +..+..+||+|++.+|..+++.|..|...||||| +++++|+|+|+|++
T Consensus 346 ~~lV~~~~~~h~~~L~~~L~~~---------g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~ 416 (501)
T PHA02558 346 NTFVMFKYVEHGKPLYEMLKKV---------YDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHH 416 (501)
T ss_pred CEEEEEEEHHHHHHHHHHHHHc---------CCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccE
Confidence 8999999999999999999884 6789999999999999999999999999999998 99999999999999
Q ss_pred EEeCCCCccc-cccCCCC
Q 035699 599 VIDPGFAKVK-SYNPKTG 615 (633)
Q Consensus 599 VID~G~~k~~-~yd~~~g 615 (633)
||....++.. .|-.+.|
T Consensus 417 vIl~~p~~s~~~~~QriG 434 (501)
T PHA02558 417 VIFAHPSKSKIIVLQSIG 434 (501)
T ss_pred EEEecCCcchhhhhhhhh
Confidence 9988777643 2544444
No 73
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=4.8e-21 Score=221.31 Aligned_cols=273 Identities=19% Similarity=0.190 Sum_probs=177.3
Q ss_pred HccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccce
Q 035699 326 RKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHE 405 (633)
Q Consensus 326 r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~ 405 (633)
++.|=++|+.-+++.++.-++.-|+.+.||+|||.++..+++.... .+..+.|+.|++.||.+.+..+...+ ..+|..
T Consensus 72 ~R~~g~~p~~vQl~~~~~l~~G~Iaem~TGeGKTL~a~lp~~l~al-~G~~v~VvTpt~~LA~qd~e~~~~l~-~~lGl~ 149 (790)
T PRK09200 72 KRVLGMRPYDVQLIGALVLHEGNIAEMQTGEGKTLTATMPLYLNAL-EGKGVHLITVNDYLAKRDAEEMGQVY-EFLGLT 149 (790)
T ss_pred HHHhCCCCchHHHHhHHHHcCCceeeecCCCcchHHHHHHHHHHHH-cCCCeEEEeCCHHHHHHHHHHHHHHH-hhcCCe
Confidence 3334344444444444444444589999999999988777764433 24489999999999999887655433 223445
Q ss_pred Eeeeeeccc-----ccCCCCcEEEeCchHH-HHHHhc----CC---CCCCceeee-ee--------cc------------
Q 035699 406 VGYSIRFED-----CTSDKTVLKYMTDGML-LREIVL----EP---SLESYSVLI-DL--------IN------------ 451 (633)
Q Consensus 406 VGy~ir~e~-----~~s~~t~Iiv~TpGrL-L~~l~~----~~---~L~~~s~vI-di--------~~------------ 451 (633)
||+.+...+ ...-.++|+|+|||+| .++|.. .+ .+..+.++| |. ++
T Consensus 150 v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~~~~ 229 (790)
T PRK09200 150 VGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQ 229 (790)
T ss_pred EEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCCccc
Confidence 554443332 1124589999999999 444332 11 345666555 00 00
Q ss_pred --------------------------------------------------------------------------------
Q 035699 452 -------------------------------------------------------------------------------- 451 (633)
Q Consensus 452 -------------------------------------------------------------------------------- 451 (633)
T Consensus 230 ~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYiV~~ 309 (790)
T PRK09200 230 SNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIVYD 309 (790)
T ss_pred cHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEEEEC
Confidence
Q ss_pred ----------cC------------------------CC----------------ccEEEeecccC--HHhHhhhhCCCCE
Q 035699 452 ----------YR------------------------PD----------------LKLLISSATLD--AENFSDYFGSAPI 479 (633)
Q Consensus 452 ----------~r------------------------pd----------------lklil~SAT~~--~~~~s~~f~~~pi 479 (633)
-| |. .++.+||.|.. .+.|.+.+ +-++
T Consensus 310 ~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y-~l~v 388 (790)
T PRK09200 310 GEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVY-NMEV 388 (790)
T ss_pred CEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHh-CCcE
Confidence 00 00 04556666652 23343333 4556
Q ss_pred EEeCCeeeeE------EEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceE
Q 035699 480 FKIPRRRYHV------ELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELI 553 (633)
Q Consensus 480 i~i~gr~~pv------~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~ 553 (633)
+.||... |+ +..| ......+.+.+..+...+. ...++||||+|+..++.++..|... +++
T Consensus 389 ~~IPt~k-p~~r~d~~~~i~--~~~~~K~~al~~~i~~~~~--~~~pvLIf~~t~~~se~l~~~L~~~---------gi~ 454 (790)
T PRK09200 389 VQIPTNR-PIIRIDYPDKVF--VTLDEKYKAVIEEVKERHE--TGRPVLIGTGSIEQSETFSKLLDEA---------GIP 454 (790)
T ss_pred EECCCCC-CcccccCCCeEE--cCHHHHHHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHC---------CCC
Confidence 6666421 21 1111 1223444444444444433 3578999999999999999999884 889
Q ss_pred EEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCC---CCcc-----EEEeCCCCccc-cccCCCCce
Q 035699 554 ICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTI---DGIK-----YVIDPGFAKVK-SYNPKTGME 617 (633)
Q Consensus 554 v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdI---p~V~-----~VID~G~~k~~-~yd~~~g~~ 617 (633)
+..|||++.+.++..+...+.+| .|+||||+|+||+|| |+|. |||++.+|... .|.++.|.+
T Consensus 455 ~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRt 525 (790)
T PRK09200 455 HNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRS 525 (790)
T ss_pred EEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccc
Confidence 99999999999988888888777 699999999999999 7999 99999999764 588877653
No 74
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.86 E-value=7.4e-21 Score=223.48 Aligned_cols=278 Identities=19% Similarity=0.185 Sum_probs=199.3
Q ss_pred HccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCC-eeeecchhHHHHHHHHHHHHHHhCCcccc
Q 035699 326 RKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQG-KIGCTQLRRVAAMSVAARVSQEMGVKLGH 404 (633)
Q Consensus 326 r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~g-kilitqPrR~aA~qva~rva~e~g~~vg~ 404 (633)
+-...+|.+|.+.+..+.++++|||+.+||||||.+|.+|+++....... +++++.||++||.+...++.+....-.+
T Consensus 66 ~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~- 144 (851)
T COG1205 66 AGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPG- 144 (851)
T ss_pred hccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCC-
Confidence 33445999999999999999999999999999999999999988665544 8899999999999999988776532211
Q ss_pred eEeeee-----ecccc---cCCCCcEEEeCchHHHHHHhcCC-----CCCCceeee-eecc-------------------
Q 035699 405 EVGYSI-----RFEDC---TSDKTVLKYMTDGMLLREIVLEP-----SLESYSVLI-DLIN------------------- 451 (633)
Q Consensus 405 ~VGy~i-----r~e~~---~s~~t~Iiv~TpGrLL~~l~~~~-----~L~~~s~vI-di~~------------------- 451 (633)
.|+..+ ..+.. ....++|+++||-||-.+++..- .+.++++|| |.+|
T Consensus 145 ~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~ 224 (851)
T COG1205 145 KVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLR 224 (851)
T ss_pred cceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHHHH
Confidence 222212 11111 24679999999999998776432 478899998 4443
Q ss_pred ---cC-CCccEEEeeccc-CHHhHhhhhCCCCEEE-eCCeeee--EEEEEEcCC---------chhHHHHHHHHHHHHHh
Q 035699 452 ---YR-PDLKLLISSATL-DAENFSDYFGSAPIFK-IPRRRYH--VELFYTKAP---------EADYIEAAIVTALQIHV 514 (633)
Q Consensus 452 ---~r-pdlklil~SAT~-~~~~~s~~f~~~pii~-i~gr~~p--v~~~y~~~~---------~~~yl~~~v~~l~~i~~ 514 (633)
.. ..+++|.+|||+ |...|..-+.+.+.-. +.+...| ...+....| ..+.... ...+...+.
T Consensus 225 ~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~-~~~~~~~~~ 303 (851)
T COG1205 225 RLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALAE-LATLAALLV 303 (851)
T ss_pred HHhccCCCceEEEEeccccChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcccchHHH-HHHHHHHHH
Confidence 22 267999999999 7766664433333322 4433222 222222222 0111111 122221111
Q ss_pred cCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCC
Q 035699 515 NEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTID 594 (633)
Q Consensus 515 ~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp 594 (633)
...-+.|||+.++..++.++..........+ ......+..+||+|+.++|.++...|+.|...+++|||.++-||||.
T Consensus 304 -~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~-~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG 381 (851)
T COG1205 304 -RNGIQTLVFFRSRKQVELLYLSPRRRLVREG-GKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIG 381 (851)
T ss_pred -HcCceEEEEEehhhhhhhhhhchhHHHhhcc-hhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeeh
Confidence 1234799999999999999876666655444 33346799999999999999999999999999999999999999999
Q ss_pred CccEEEeCCCCcc
Q 035699 595 GIKYVIDPGFAKV 607 (633)
Q Consensus 595 ~V~~VID~G~~k~ 607 (633)
+++.||.+|+|-.
T Consensus 382 ~ldavi~~g~P~~ 394 (851)
T COG1205 382 SLDAVIAYGYPGV 394 (851)
T ss_pred hhhhHhhcCCCCc
Confidence 9999999999983
No 75
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=1e-20 Score=214.51 Aligned_cols=147 Identities=18% Similarity=0.130 Sum_probs=102.6
Q ss_pred cEEEeecccC--HHhHhhhhCCCCEEEeCCeee--e-EEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHH
Q 035699 457 KLLISSATLD--AENFSDYFGSAPIFKIPRRRY--H-VELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQF 531 (633)
Q Consensus 457 klil~SAT~~--~~~~s~~f~~~pii~i~gr~~--p-v~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~ei 531 (633)
++..||||.. .+.|.+.++-. ++.||-..- . ....+...+....+.+.+..+...+. .+.++||||+|+..+
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l~-vv~IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~--~~~pvLIft~t~~~s 486 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGLP-VVRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHA--QGRPVLVGTRSVAAS 486 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCCC-eEEeCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHHh--cCCCEEEEeCcHHHH
Confidence 5668888884 34566655433 344543210 0 11112223344555554444444332 235799999999999
Q ss_pred HHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCC---Ccc-----EEEeCC
Q 035699 532 ETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTID---GIK-----YVIDPG 603 (633)
Q Consensus 532 e~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp---~V~-----~VID~G 603 (633)
+.++..|... ++.+..|||++.+.++..+...+.+| .|+||||+|+||+||+ +|. |||++.
T Consensus 487 e~L~~~L~~~---------gi~~~~Lhg~~~~rE~~ii~~ag~~g--~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d 555 (656)
T PRK12898 487 ERLSALLREA---------GLPHQVLNAKQDAEEAAIVARAGQRG--RITVATNMAGRGTDIKLEPGVAARGGLHVILTE 555 (656)
T ss_pred HHHHHHHHHC---------CCCEEEeeCCcHHHHHHHHHHcCCCC--cEEEEccchhcccCcCCccchhhcCCCEEEEcC
Confidence 9999999884 89999999998777766666665555 5999999999999999 776 999999
Q ss_pred CCccc-cccCCCCce
Q 035699 604 FAKVK-SYNPKTGME 617 (633)
Q Consensus 604 ~~k~~-~yd~~~g~~ 617 (633)
+|... .|+++.|..
T Consensus 556 ~P~s~r~y~hr~GRT 570 (656)
T PRK12898 556 RHDSARIDRQLAGRC 570 (656)
T ss_pred CCCCHHHHHHhcccc
Confidence 99875 598887763
No 76
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.84 E-value=6.3e-20 Score=209.41 Aligned_cols=273 Identities=19% Similarity=0.174 Sum_probs=184.2
Q ss_pred HccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccce
Q 035699 326 RKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHE 405 (633)
Q Consensus 326 r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~ 405 (633)
++.|=+.|+.-+++.++.-++..|+.++||+|||.++..+++-.... +..+.|+.|++.||.+.+..+...+ ..+|..
T Consensus 50 ~R~lg~~p~~vQlig~~~l~~G~Iaem~TGeGKTLva~lpa~l~aL~-G~~V~VvTpt~~LA~qdae~~~~l~-~~LGLs 127 (745)
T TIGR00963 50 KRVLGMRPFDVQLIGGIALHKGKIAEMKTGEGKTLTATLPAYLNALT-GKGVHVVTVNDYLAQRDAEWMGQVY-RFLGLS 127 (745)
T ss_pred HHHhCCCccchHHhhhhhhcCCceeeecCCCccHHHHHHHHHHHHHh-CCCEEEEcCCHHHHHHHHHHHHHHh-ccCCCe
Confidence 44444444444455555545555899999999999877776433232 3379999999999999988665543 334555
Q ss_pred Eeeeeecccc----cCCCCcEEEeCchHH-HHHHhcCC-------CCCCceeee-ee-----------------------
Q 035699 406 VGYSIRFEDC----TSDKTVLKYMTDGML-LREIVLEP-------SLESYSVLI-DL----------------------- 449 (633)
Q Consensus 406 VGy~ir~e~~----~s~~t~Iiv~TpGrL-L~~l~~~~-------~L~~~s~vI-di----------------------- 449 (633)
||..+...+. ..-.++|+|+|||+| ++++..+- .+..+.++| |.
T Consensus 128 v~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~~~~ 207 (745)
T TIGR00963 128 VGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKST 207 (745)
T ss_pred EEEEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCCCch
Confidence 6654433221 123579999999999 77775441 456677666 00
Q ss_pred --------------------------------------------------------------------------------
Q 035699 450 -------------------------------------------------------------------------------- 449 (633)
Q Consensus 450 -------------------------------------------------------------------------------- 449 (633)
T Consensus 208 ~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~ 287 (745)
T TIGR00963 208 ELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIVRDG 287 (745)
T ss_pred HHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECC
Confidence
Q ss_pred ----c-----------------c----------cCCC----------------ccEEEeecccC--HHhHhhhhCCCCEE
Q 035699 450 ----I-----------------N----------YRPD----------------LKLLISSATLD--AENFSDYFGSAPIF 480 (633)
Q Consensus 450 ----~-----------------~----------~rpd----------------lklil~SAT~~--~~~~s~~f~~~pii 480 (633)
. | ..|. .++..||.|.. .+.|.+.+ +-+++
T Consensus 288 ~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY-~l~vv 366 (745)
T TIGR00963 288 EVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIY-NLEVV 366 (745)
T ss_pred EEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHh-CCCEE
Confidence 0 0 0000 14556666662 23444443 45566
Q ss_pred EeCCee------eeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEE
Q 035699 481 KIPRRR------YHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELII 554 (633)
Q Consensus 481 ~i~gr~------~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v 554 (633)
.||... +|..++ ......+.+.+..+...|.. .-++||||++...++.+...|.+. +++.
T Consensus 367 ~IPtnkp~~R~d~~d~i~---~t~~~k~~ai~~~i~~~~~~--grpvLV~t~si~~se~ls~~L~~~---------gi~~ 432 (745)
T TIGR00963 367 VVPTNRPVIRKDLSDLVY---KTEEEKWKAVVDEIKERHAK--GQPVLVGTTSVEKSELLSNLLKER---------GIPH 432 (745)
T ss_pred EeCCCCCeeeeeCCCeEE---cCHHHHHHHHHHHHHHHHhc--CCCEEEEeCcHHHHHHHHHHHHHc---------CCCe
Confidence 666421 122222 12344566666666666643 468999999999999999999885 7888
Q ss_pred EeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCC-------ccEEEeCCCCccc-cccCCCCce
Q 035699 555 CPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDG-------IKYVIDPGFAKVK-SYNPKTGME 617 (633)
Q Consensus 555 ~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~-------V~~VID~G~~k~~-~yd~~~g~~ 617 (633)
..|||+ +..|...+..|..+.-.|+||||+|+||+||+. .-|||++.+|... .|+++.|.+
T Consensus 433 ~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRt 501 (745)
T TIGR00963 433 NVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRS 501 (745)
T ss_pred EEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccc
Confidence 999999 788888888898899999999999999999998 5599999999765 487776653
No 77
>PRK13766 Hef nuclease; Provisional
Probab=99.83 E-value=3e-19 Score=210.62 Aligned_cols=270 Identities=20% Similarity=0.210 Sum_probs=179.0
Q ss_pred cCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCc---ccc
Q 035699 328 TLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVK---LGH 404 (633)
Q Consensus 328 ~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~---vg~ 404 (633)
.++..+||..+...+..+ +++|++|||+|||.++..++.......+++++++.||+.++.|.+..+...++.. ++.
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~ 91 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVV 91 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEE
Confidence 456678899998887777 6899999999999876666554433345699999999999999998888777653 211
Q ss_pred eEeeeeecccc--cCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eecccC-----------------CCccEEEeec
Q 035699 405 EVGYSIRFEDC--TSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLINYR-----------------PDLKLLISSA 463 (633)
Q Consensus 405 ~VGy~ir~e~~--~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~~~r-----------------pdlklil~SA 463 (633)
..| ....... ...+.+|+|+||+.+...+.... .+.++++|| |.+|.. +...+++|||
T Consensus 92 ~~g-~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~il~lTa 170 (773)
T PRK13766 92 FTG-EVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLVLGLTA 170 (773)
T ss_pred EeC-CCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEEEEEEc
Confidence 111 1111111 12357899999999998887665 688899888 666532 2345899999
Q ss_pred cc--CHHhHhhhhCCC--CEEEeCCee--------eeEEEEE--EcCCc-------------------------------
Q 035699 464 TL--DAENFSDYFGSA--PIFKIPRRR--------YHVELFY--TKAPE------------------------------- 498 (633)
Q Consensus 464 T~--~~~~~s~~f~~~--pii~i~gr~--------~pv~~~y--~~~~~------------------------------- 498 (633)
|+ +.+.+.....+- ..+.+.... .+..+.+ .+.+.
T Consensus 171 TP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~ 250 (773)
T PRK13766 171 SPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSISP 250 (773)
T ss_pred CCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCC
Confidence 98 333333322210 111110000 0000000 00000
Q ss_pred -----------------------h------------------------------hHHH----------------------
Q 035699 499 -----------------------A------------------------------DYIE---------------------- 503 (633)
Q Consensus 499 -----------------------~------------------------------~yl~---------------------- 503 (633)
. .|+.
T Consensus 251 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~ 330 (773)
T PRK13766 251 DVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVEDP 330 (773)
T ss_pred CcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhCH
Confidence 0 0000
Q ss_pred ----------------HHHHHHHHHH----hcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCC---
Q 035699 504 ----------------AAIVTALQIH----VNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGN--- 560 (633)
Q Consensus 504 ----------------~~v~~l~~i~----~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~--- 560 (633)
.++..+..++ ...+.+++||||+++..++.+++.|... ++.+..+||.
T Consensus 331 ~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~---------~~~~~~~~g~~~~ 401 (773)
T PRK13766 331 RFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKE---------GIKAVRFVGQASK 401 (773)
T ss_pred HHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhC---------CCceEEEEccccc
Confidence 0011111111 1245689999999999999999999653 5667777775
Q ss_pred -----CCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccc
Q 035699 561 -----LPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVK 608 (633)
Q Consensus 561 -----l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~ 608 (633)
|++.+|..++..|+.|..+|||||+++++|+|+|++++||+++.+...
T Consensus 402 ~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~ 454 (773)
T PRK13766 402 DGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSE 454 (773)
T ss_pred cccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCH
Confidence 999999999999999999999999999999999999999999886543
No 78
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.81 E-value=9.5e-19 Score=202.71 Aligned_cols=262 Identities=16% Similarity=0.185 Sum_probs=174.3
Q ss_pred cCCChHHHHHHHHHHHc---CCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccc
Q 035699 328 TLPIYPFREELLQAVSE---YPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGH 404 (633)
Q Consensus 328 ~LPi~~~q~~il~al~~---~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~ 404 (633)
...+++.|++++..+.+ +.++++.|+||||||..+..++... +..+++++++.|++++|.|+..++.+.+|..+..
T Consensus 142 ~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~-l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~ 220 (679)
T PRK05580 142 PPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEV-LAQGKQALVLVPEIALTPQMLARFRARFGAPVAV 220 (679)
T ss_pred CCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHH-HHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEE
Confidence 34567788888888887 4789999999999999887766554 3345589999999999999999999888766543
Q ss_pred eEeeeeeccc------ccCCCCcEEEeCchHHHHHHhcCCCCCCceeee-eecc----------------------cCCC
Q 035699 405 EVGYSIRFED------CTSDKTVLKYMTDGMLLREIVLEPSLESYSVLI-DLIN----------------------YRPD 455 (633)
Q Consensus 405 ~VGy~ir~e~------~~s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-di~~----------------------~rpd 455 (633)
..|.....+. ......+|+|+|++.++. .+.++++|| |..| ...+
T Consensus 221 ~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~~------p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~~ 294 (679)
T PRK05580 221 LHSGLSDGERLDEWRKAKRGEAKVVIGARSALFL------PFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLEN 294 (679)
T ss_pred EECCCCHHHHHHHHHHHHcCCCCEEEeccHHhcc------cccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhccC
Confidence 3332111110 123457899999998752 367778777 3321 1235
Q ss_pred ccEEEeecccCHHhHhhhhC-CCCEEEeCCee----ee-EEEEEEcC--Cchh---HHHHHHHHHHHHHhcCCCCCEEEE
Q 035699 456 LKLLISSATLDAENFSDYFG-SAPIFKIPRRR----YH-VELFYTKA--PEAD---YIEAAIVTALQIHVNEPIGDILVF 524 (633)
Q Consensus 456 lklil~SAT~~~~~~s~~f~-~~pii~i~gr~----~p-v~~~y~~~--~~~~---yl~~~v~~l~~i~~~~~~g~iLVF 524 (633)
.++|++|||+..+.+..... ....+.++.+. .| +.+..... ...+ ....++..+.+.+ ....++|||
T Consensus 295 ~~~il~SATps~~s~~~~~~g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l--~~g~qvll~ 372 (679)
T PRK05580 295 IPVVLGSATPSLESLANAQQGRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRL--ERGEQVLLF 372 (679)
T ss_pred CCEEEEcCCCCHHHHHHHhccceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHH--HcCCeEEEE
Confidence 68999999998877765432 22333333321 22 12211110 0000 1112222222222 123478888
Q ss_pred cCcH------------------------------------------------------------HHHHHHHHHHHHhhcc
Q 035699 525 LTGQ------------------------------------------------------------DQFETAEEILKQRTRG 544 (633)
Q Consensus 525 l~t~------------------------------------------------------------~eie~l~~~L~~~~~~ 544 (633)
+|.+ ..++.+++.|...+
T Consensus 373 ~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~f-- 450 (679)
T PRK05580 373 LNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELF-- 450 (679)
T ss_pred EcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhC--
Confidence 8752 24556666666543
Q ss_pred cCCCCCceEEEeccCCCCH--HHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEE--EeCCCC
Q 035699 545 LGTKIAELIICPIYGNLPT--ELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYV--IDPGFA 605 (633)
Q Consensus 545 l~~~~~~~~v~~lHg~l~~--~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~V--ID~G~~ 605 (633)
++..|..+|+++++ ..+.++++.|+.|...|||+|+++++|+|+|+|++| +|.+.+
T Consensus 451 -----p~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~ 510 (679)
T PRK05580 451 -----PEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLG 510 (679)
T ss_pred -----CCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchh
Confidence 57889999999975 568899999999999999999999999999999999 666544
No 79
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.81 E-value=1.4e-18 Score=179.16 Aligned_cols=243 Identities=18% Similarity=0.236 Sum_probs=176.5
Q ss_pred HHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhC-CcccceEeeeeeccc
Q 035699 336 EELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMG-VKLGHEVGYSIRFED 414 (633)
Q Consensus 336 ~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g-~~vg~~VGy~ir~e~ 414 (633)
..++..+.+++..+|.|.||+|||..+.+.+... +..+++|++..||-..+..++.|+.+.+. +.+....| ++
T Consensus 107 ~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~a-l~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg-----~S 180 (441)
T COG4098 107 NQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQA-LNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYG-----DS 180 (441)
T ss_pred HHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHH-HhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeEec-----CC
Confidence 5578899999999999999999999887776554 55667999999999999999999998774 55433322 22
Q ss_pred ccCCCCcEEEeCchHHHHHHhcCCCCCCceeee-ee---ccc--------------CCCccEEEeecccCHHhHhhhhC-
Q 035699 415 CTSDKTVLKYMTDGMLLREIVLEPSLESYSVLI-DL---INY--------------RPDLKLLISSATLDAENFSDYFG- 475 (633)
Q Consensus 415 ~~s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-di---~~~--------------rpdlklil~SAT~~~~~~s~~f~- 475 (633)
...-.++++|||...|+++- ..|+++| |. ..+ .+.--+|++|||..-+.-.+...
T Consensus 181 ~~~fr~plvVaTtHQLlrFk------~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~IylTATp~k~l~r~~~~g 254 (441)
T COG4098 181 DSYFRAPLVVATTHQLLRFK------QAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATIYLTATPTKKLERKILKG 254 (441)
T ss_pred chhccccEEEEehHHHHHHH------hhccEEEEeccccccccCCHHHHHHHHHhhcccCceEEEecCChHHHHHHhhhC
Confidence 22234889999999999984 4567766 22 221 23346889999986655555443
Q ss_pred CCCEEEeCCee----eeEEEEEEcCCchhHHH-----HHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccC
Q 035699 476 SAPIFKIPRRR----YHVELFYTKAPEADYIE-----AAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLG 546 (633)
Q Consensus 476 ~~pii~i~gr~----~pv~~~y~~~~~~~yl~-----~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~ 546 (633)
+-..+.+|.|- .|+.-+.-..+...++. .++...++-+... ..++|||+|+.+..+.++..|++.+
T Consensus 255 ~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~-~~P~liF~p~I~~~eq~a~~lk~~~---- 329 (441)
T COG4098 255 NLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKT-GRPVLIFFPEIETMEQVAAALKKKL---- 329 (441)
T ss_pred CeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhc-CCcEEEEecchHHHHHHHHHHHhhC----
Confidence 33346666553 23433333333333332 2344444433322 3689999999999999999997753
Q ss_pred CCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEE
Q 035699 547 TKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVI 600 (633)
Q Consensus 547 ~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VI 600 (633)
+...+...|+. ...|.+..+.|++|..++||+|.|+|||+|+|+|+++|
T Consensus 330 ---~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~V 378 (441)
T COG4098 330 ---PKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFV 378 (441)
T ss_pred ---Cccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEE
Confidence 56778889987 56688889999999999999999999999999999765
No 80
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.80 E-value=1.1e-18 Score=189.23 Aligned_cols=272 Identities=16% Similarity=0.126 Sum_probs=196.1
Q ss_pred HHHHHHHHHccCCChHHHH-HHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHH
Q 035699 318 ALEMLQEERKTLPIYPFRE-ELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQ 396 (633)
Q Consensus 318 ~~~~l~~~r~~LPi~~~q~-~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~ 396 (633)
..+.+.+.+-.--+-|+|- .+-.-+.++.+++|++.|+||||+.--+.=....+..+++.+++.|--+||.|-+..+..
T Consensus 204 ~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQKy~dF~~ 283 (830)
T COG1202 204 KFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQKYEDFKE 283 (830)
T ss_pred HHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhhcchHHHHHH
Confidence 3444555442222233333 344457788999999999999996422211111133355999999999999999887766
Q ss_pred Hh---CCcccceEeeee-ecc-----cccCCCCcEEEeCchHHHHHHhcCCCCCCceeee-eecc---------------
Q 035699 397 EM---GVKLGHEVGYSI-RFE-----DCTSDKTVLKYMTDGMLLREIVLEPSLESYSVLI-DLIN--------------- 451 (633)
Q Consensus 397 e~---g~~vg~~VGy~i-r~e-----~~~s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-di~~--------------- 451 (633)
.+ |.++...||.+- +.. ..++..++|||+|..=+--++.++.+|.++..|| |.+|
T Consensus 284 rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~deERG~RLdGLI 363 (830)
T COG1202 284 RYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDEERGPRLDGLI 363 (830)
T ss_pred HhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccchhcccchhhHH
Confidence 54 444444556322 111 1245678999999998888888888999999888 4333
Q ss_pred -----cCCCccEEEeeccc-CHHhHhhhhCCCCEEEeCCeeeeEEEEEEcCC-chhHHH---HHHHHHH-HHHhcCCCCC
Q 035699 452 -----YRPDLKLLISSATL-DAENFSDYFGSAPIFKIPRRRYHVELFYTKAP-EADYIE---AAIVTAL-QIHVNEPIGD 520 (633)
Q Consensus 452 -----~rpdlklil~SAT~-~~~~~s~~f~~~pii~i~gr~~pv~~~y~~~~-~~~yl~---~~v~~l~-~i~~~~~~g~ 520 (633)
..|+.|+|.+|||+ |++.+++.++ +..+...+|..|++-|.+.+. +...++ ..+..=+ ......-.|+
T Consensus 364 ~RLr~l~~~AQ~i~LSATVgNp~elA~~l~-a~lV~y~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQ 442 (830)
T COG1202 364 GRLRYLFPGAQFIYLSATVGNPEELAKKLG-AKLVLYDERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQ 442 (830)
T ss_pred HHHHHhCCCCeEEEEEeecCChHHHHHHhC-CeeEeecCCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCc
Confidence 23678999999999 9999999985 555556788888888877665 333322 2222212 2222334599
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEE
Q 035699 521 ILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYV 599 (633)
Q Consensus 521 iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~V 599 (633)
+|||.+++..|+.++..|... ++.+.|+|++||..+|..+...|..+...+||+|-.++.|+|+|.-.+|
T Consensus 443 tIVFT~SRrr~h~lA~~L~~k---------G~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVI 512 (830)
T COG1202 443 TIVFTYSRRRCHELADALTGK---------GLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVI 512 (830)
T ss_pred eEEEecchhhHHHHHHHhhcC---------CcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHH
Confidence 999999999999999999763 8999999999999999999999999999999999999999999954433
No 81
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.80 E-value=3.5e-18 Score=184.29 Aligned_cols=265 Identities=18% Similarity=0.151 Sum_probs=178.6
Q ss_pred HHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccceEee--ee
Q 035699 333 PFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGY--SI 410 (633)
Q Consensus 333 ~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~VGy--~i 410 (633)
.||..|......+ +++|+-|||=|||+.....+.......+|+++++.||+-|+.|.+..+.+.+|.+-+..+.+ .+
T Consensus 18 ~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev 96 (542)
T COG1111 18 LYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEV 96 (542)
T ss_pred HHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCC
Confidence 4677777666666 58889999999998766665544333344899999999999999999999999876543321 12
Q ss_pred eccccc--CCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eecc-----------------cCCCccEEEeeccc--CH
Q 035699 411 RFEDCT--SDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLIN-----------------YRPDLKLLISSATL--DA 467 (633)
Q Consensus 411 r~e~~~--s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~~-----------------~rpdlklil~SAT~--~~ 467 (633)
+-+.+. ..+..|+|+||..+.+-|..+. ++.+++|+| |.+| ...++.++.+|||+ +.
T Consensus 97 ~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASPGs~~ 176 (542)
T COG1111 97 RPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASPGSDL 176 (542)
T ss_pred ChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEEEecCCCCCH
Confidence 222111 2467899999999999988877 999999999 5544 23566899999999 67
Q ss_pred HhHhhhhCCCCEEEe----CC----ee--eeEEEEEEcCCc---------------------------------------
Q 035699 468 ENFSDYFGSAPIFKI----PR----RR--YHVELFYTKAPE--------------------------------------- 498 (633)
Q Consensus 468 ~~~s~~f~~~pii~i----~g----r~--~pv~~~y~~~~~--------------------------------------- 498 (633)
+++.+...+-.|-+| .. +. .++++.+.+.+.
T Consensus 177 ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl 256 (542)
T COG1111 177 EKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDL 256 (542)
T ss_pred HHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcccHhHH
Confidence 777776654333221 11 00 122222221100
Q ss_pred ----------------------------------------------hhHHHH------------------------H---
Q 035699 499 ----------------------------------------------ADYIEA------------------------A--- 505 (633)
Q Consensus 499 ----------------------------------------------~~yl~~------------------------~--- 505 (633)
.+|+.. +
T Consensus 257 ~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~ 336 (542)
T COG1111 257 LELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRL 336 (542)
T ss_pred HHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHH
Confidence 001000 0
Q ss_pred -------------HHHHHHHH----hcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEe-----ccCCCCH
Q 035699 506 -------------IVTALQIH----VNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICP-----IYGNLPT 563 (633)
Q Consensus 506 -------------v~~l~~i~----~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~-----lHg~l~~ 563 (633)
+..+..++ ...+...+|||.+-++.++.+...|.... .+.. ..++. .-.||+|
T Consensus 337 ~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~----~~~~-~rFiGQa~r~~~~GMsQ 411 (542)
T COG1111 337 LIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIG----IKAR-VRFIGQASREGDKGMSQ 411 (542)
T ss_pred HHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcC----Ccce-eEEeeccccccccccCH
Confidence 00001111 11223579999999999999999998852 1111 11111 1257999
Q ss_pred HHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCC
Q 035699 564 ELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPG 603 (633)
Q Consensus 564 ~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G 603 (633)
.+|.++++.|+.|..+|||||+|+|-|||||+|++||-+.
T Consensus 412 keQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYE 451 (542)
T COG1111 412 KEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYE 451 (542)
T ss_pred HHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEec
Confidence 9999999999999999999999999999999999999543
No 82
>PRK09694 helicase Cas3; Provisional
Probab=99.78 E-value=7.9e-18 Score=197.71 Aligned_cols=268 Identities=17% Similarity=0.168 Sum_probs=162.0
Q ss_pred CChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccc-cCCeeeecchhHHHHHHHHHHHHHHh----C-Cccc
Q 035699 330 PIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYT-KQGKIGCTQLRRVAAMSVAARVSQEM----G-VKLG 403 (633)
Q Consensus 330 Pi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~-~~gkilitqPrR~aA~qva~rva~e~----g-~~vg 403 (633)
..+++|..+.....+...+||.||||||||.+...+++..... ..++++++.||+..+.+++.|+...+ + ..++
T Consensus 286 ~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~v~ 365 (878)
T PRK09694 286 QPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPSPNLI 365 (878)
T ss_pred CChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 4567777765544456789999999999998865554432111 12389999999999999999987532 2 1222
Q ss_pred ceEeeee---eccc-----------------c------cCC---CCcEEEeCchHHHHHHhcCC--CCCCc----eeee-
Q 035699 404 HEVGYSI---RFED-----------------C------TSD---KTVLKYMTDGMLLREIVLEP--SLESY----SVLI- 447 (633)
Q Consensus 404 ~~VGy~i---r~e~-----------------~------~s~---~t~Iiv~TpGrLL~~l~~~~--~L~~~----s~vI- 447 (633)
...|... .+.. + ... -..|+|||.-.++--++..+ .+..+ ++||
T Consensus 366 L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svvIi 445 (878)
T PRK09694 366 LAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVLIV 445 (878)
T ss_pred eecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeEEE
Confidence 2222111 0000 0 001 16899999999986655433 22222 2444
Q ss_pred eecccC-----------------CCccEEEeecccCHHh---HhhhhCCC---------CEEEeCC----ee--------
Q 035699 448 DLINYR-----------------PDLKLLISSATLDAEN---FSDYFGSA---------PIFKIPR----RR-------- 486 (633)
Q Consensus 448 di~~~r-----------------pdlklil~SAT~~~~~---~s~~f~~~---------pii~i~g----r~-------- 486 (633)
|.+|.. ....+|+||||++... +..-+... |.+...+ ..
T Consensus 446 DEVHAyD~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~~~ 525 (878)
T PRK09694 446 DEVHAYDAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSAHPE 525 (878)
T ss_pred echhhCCHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeecccccc
Confidence 554422 2347999999996532 32222211 2221110 00
Q ss_pred -----eeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCC
Q 035699 487 -----YHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNL 561 (633)
Q Consensus 487 -----~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l 561 (633)
..|.+.........-....+..+.... ...+++||||||.+.++.+++.|++.. .++..+..+||.+
T Consensus 526 ~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~--~~g~~vLVf~NTV~~Aq~ly~~L~~~~------~~~~~v~llHsrf 597 (878)
T PRK09694 526 QLPARFTIQLEPICLADMLPDLTLLQRMIAAA--NAGAQVCLICNLVDDAQKLYQRLKELN------NTQVDIDLFHARF 597 (878)
T ss_pred ccCcceEEEEEeeccccccCHHHHHHHHHHHH--hcCCEEEEEECCHHHHHHHHHHHHhhC------CCCceEEEEeCCC
Confidence 111111111110011122333333322 235789999999999999999998742 1246799999999
Q ss_pred CHHHHH----HHhCCC-CCCC---eeEEEeCCccccCCCCCCccEEEeCCCCc
Q 035699 562 PTELQA----KIFEPT-PEGA---RKVVLATNIAETSLTIDGIKYVIDPGFAK 606 (633)
Q Consensus 562 ~~~~R~----~i~~~f-~~g~---rkVLvATdIAerGLdIp~V~~VID~G~~k 606 (633)
++..|. ++++.| +.|. .+|||||+|+|+||||+ +++||..-.|.
T Consensus 598 ~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId-~DvlItdlaPi 649 (878)
T PRK09694 598 TLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLD-FDWLITQLCPV 649 (878)
T ss_pred CHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecC-CCeEEECCCCH
Confidence 999884 566777 5565 47999999999999995 89999866553
No 83
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=4.1e-18 Score=197.09 Aligned_cols=250 Identities=20% Similarity=0.157 Sum_probs=167.3
Q ss_pred HccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccce
Q 035699 326 RKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHE 405 (633)
Q Consensus 326 r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~ 405 (633)
++.|-+.+|--+++-++.=|+--|+.++||+|||+++.++++...+. +..+.|+.|++.||.+.+..+...+ ..+|..
T Consensus 76 ~R~lg~~~ydvQliGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~-G~~V~VvTpn~yLA~qd~e~m~~l~-~~lGLt 153 (896)
T PRK13104 76 LRTLGLRHFDVQLIGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAIS-GRGVHIVTVNDYLAKRDSQWMKPIY-EFLGLT 153 (896)
T ss_pred HHHcCCCcchHHHhhhhhhccCccccccCCCCchHHHHHHHHHHHhc-CCCEEEEcCCHHHHHHHHHHHHHHh-cccCce
Confidence 56777777777788887777777899999999999988887755443 2368999999999999988665543 335666
Q ss_pred Eeeeeeccccc----CCCCcEEEeCchHH-HHHHhcCC--CC-----CCceeee---------eecc-------------
Q 035699 406 VGYSIRFEDCT----SDKTVLKYMTDGML-LREIVLEP--SL-----ESYSVLI---------DLIN------------- 451 (633)
Q Consensus 406 VGy~ir~e~~~----s~~t~Iiv~TpGrL-L~~l~~~~--~L-----~~~s~vI---------di~~------------- 451 (633)
||+.+.+.+.. .-.++|+|+|||+| +++|..+. ++ ..+.++| |.++
T Consensus 154 v~~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~~~~~ 233 (896)
T PRK13104 154 VGVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAAEDSS 233 (896)
T ss_pred EEEEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCCccch
Confidence 66544433211 23589999999999 88887653 23 4666666 0000
Q ss_pred ------------cCC--------------Cc-------------------------------------------------
Q 035699 452 ------------YRP--------------DL------------------------------------------------- 456 (633)
Q Consensus 452 ------------~rp--------------dl------------------------------------------------- 456 (633)
..+ .-
T Consensus 234 ~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL~A~~ 313 (896)
T PRK13104 234 ELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAALKAHA 313 (896)
T ss_pred HHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHHHHHH
Confidence 000 00
Q ss_pred -------------------------------------------------------------------cEEEeeccc--CH
Q 035699 457 -------------------------------------------------------------------KLLISSATL--DA 467 (633)
Q Consensus 457 -------------------------------------------------------------------klil~SAT~--~~ 467 (633)
++-.|+.|. ..
T Consensus 314 lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te~ 393 (896)
T PRK13104 314 MFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTADTEA 393 (896)
T ss_pred HhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCChhHH
Confidence 111222222 01
Q ss_pred HhHhhhhCCCCEEEeCCee------eeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHh
Q 035699 468 ENFSDYFGSAPIFKIPRRR------YHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQR 541 (633)
Q Consensus 468 ~~~s~~f~~~pii~i~gr~------~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~ 541 (633)
..|.+.+ +-+++.||... +|-.++ ......+.+.+..+...|.. ..++||||+|.+.++.+...|...
T Consensus 394 ~Ef~~iY-~l~Vv~IPtnkp~~R~d~~d~v~---~t~~~k~~av~~~i~~~~~~--g~PVLVgt~Sie~sE~ls~~L~~~ 467 (896)
T PRK13104 394 YEFQQIY-NLEVVVIPTNRSMIRKDEADLVY---LTQADKFQAIIEDVRECGVR--KQPVLVGTVSIEASEFLSQLLKKE 467 (896)
T ss_pred HHHHHHh-CCCEEECCCCCCcceecCCCeEE---cCHHHHHHHHHHHHHHHHhC--CCCEEEEeCcHHHHHHHHHHHHHc
Confidence 1111111 12222232210 011111 12344566666677666653 468999999999999999999885
Q ss_pred hcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCC
Q 035699 542 TRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTID 594 (633)
Q Consensus 542 ~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp 594 (633)
+++...|||++.+.++..+.+.|.+|. |+||||+|+||+||-
T Consensus 468 ---------gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~ 509 (896)
T PRK13104 468 ---------NIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIV 509 (896)
T ss_pred ---------CCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCccee
Confidence 899999999999999999999999995 999999999999995
No 84
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.77 E-value=3.9e-18 Score=199.33 Aligned_cols=277 Identities=18% Similarity=0.217 Sum_probs=200.6
Q ss_pred HccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccce
Q 035699 326 RKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHE 405 (633)
Q Consensus 326 r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~ 405 (633)
...+.++++|++.+.+|..+..|+|+||||||||.. .-|........+.++++|.|.++|..|.+..+...+|.- ...
T Consensus 115 ~~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvV-aeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgdv-~~~ 192 (1041)
T COG4581 115 EYPFELDPFQQEAIAILERGESVLVCAPTSSGKTVV-AEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDV-ADM 192 (1041)
T ss_pred hCCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchH-HHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhhh-hhh
Confidence 467889999999999999999999999999999943 334333334445589999999999999999999888843 222
Q ss_pred EeeeeecccccCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eecc-----------------cCCCccEEEeeccc-
Q 035699 406 VGYSIRFEDCTSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLIN-----------------YRPDLKLLISSATL- 465 (633)
Q Consensus 406 VGy~ir~e~~~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~~-----------------~rpdlklil~SAT~- 465 (633)
||. +.++-..++.+.++|||...|-.++..+. .+..+..|| |..| ....+++|++|||+
T Consensus 193 vGL-~TGDv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~LSATv~ 271 (1041)
T COG4581 193 VGL-MTGDVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHVRFVFLSATVP 271 (1041)
T ss_pred ccc-eecceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCCCcEEEEeCCCC
Confidence 443 23344456788999999999999988774 899999998 4433 33457999999999
Q ss_pred CHHhHhhhhC-----CCCEEEeCCeeeeEEEEEEcCC--------chhHHHH----HHHH--------------------
Q 035699 466 DAENFSDYFG-----SAPIFKIPRRRYHVELFYTKAP--------EADYIEA----AIVT-------------------- 508 (633)
Q Consensus 466 ~~~~~s~~f~-----~~pii~i~gr~~pv~~~y~~~~--------~~~yl~~----~v~~-------------------- 508 (633)
|++.|..|+. ++.++..+-|..|..+++.... ..++... +...
T Consensus 272 N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a 351 (1041)
T COG4581 272 NAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYA 351 (1041)
T ss_pred CHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCcccccccc
Confidence 8999999995 4556666778788877765431 0100000 0000
Q ss_pred ------------------HHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHH-------------------hhcccCCCCCc
Q 035699 509 ------------------ALQIHVNEPIGDILVFLTGQDQFETAEEILKQ-------------------RTRGLGTKIAE 551 (633)
Q Consensus 509 ------------------l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~-------------------~~~~l~~~~~~ 551 (633)
++..+.....-++|||+=++..|+.++..+.. .+..++....+
T Consensus 352 ~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~ 431 (1041)
T COG4581 352 RRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRE 431 (1041)
T ss_pred ccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhc
Confidence 11111122235799999999999999888751 11223322222
Q ss_pred eE-------------EEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCc
Q 035699 552 LI-------------ICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAK 606 (633)
Q Consensus 552 ~~-------------v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k 606 (633)
++ +..+|++|-+..+..+..-|..|-.|||+||.+.+-||++| +..||=+++.|
T Consensus 432 lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmP-artvv~~~l~K 498 (1041)
T COG4581 432 LPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMP-ARTVVFTSLSK 498 (1041)
T ss_pred CcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCc-ccceeeeeeEE
Confidence 22 45689999999999999999999999999999999999999 55555566655
No 85
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.75 E-value=1.6e-17 Score=186.51 Aligned_cols=240 Identities=16% Similarity=0.188 Sum_probs=158.2
Q ss_pred EEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccceEeeeeecc------cccCCCCcE
Q 035699 349 VIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFE------DCTSDKTVL 422 (633)
Q Consensus 349 Ii~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~VGy~ir~e------~~~s~~t~I 422 (633)
++.|+||||||..+...+... +..+++++++.|++.++.|++.++.+.+|..+....|.....+ ........|
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~-l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~I 79 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKV-LALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILV 79 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHH-HHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCE
Confidence 468999999998876665544 3445589999999999999999998888765432222110000 111245789
Q ss_pred EEeCchHHHHHHhcCCCCCCceeee-eecc----------------------cCCCccEEEeecccCHHhHhhhhCCC-C
Q 035699 423 KYMTDGMLLREIVLEPSLESYSVLI-DLIN----------------------YRPDLKLLISSATLDAENFSDYFGSA-P 478 (633)
Q Consensus 423 iv~TpGrLL~~l~~~~~L~~~s~vI-di~~----------------------~rpdlklil~SAT~~~~~~s~~f~~~-p 478 (633)
+|+|++.|+. .+.+++.|| |..| ...+..+|++|||+..+.+.....+. .
T Consensus 80 VVGTrsalf~------p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~~~~g~~~ 153 (505)
T TIGR00595 80 VIGTRSALFL------PFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLESYHNAKQKAYR 153 (505)
T ss_pred EECChHHHcC------cccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHhcCCeE
Confidence 9999997752 367788888 3321 12357899999999888777654332 1
Q ss_pred EEEeC----Ceeee-EEEEEEcC-CchhHH-HHHHHHHHHHHhcCCCCCEEEEcCcHHH---------------------
Q 035699 479 IFKIP----RRRYH-VELFYTKA-PEADYI-EAAIVTALQIHVNEPIGDILVFLTGQDQ--------------------- 530 (633)
Q Consensus 479 ii~i~----gr~~p-v~~~y~~~-~~~~yl-~~~v~~l~~i~~~~~~g~iLVFl~t~~e--------------------- 530 (633)
.+.++ +...| +.+..... +....+ ..++..+.+.+. ..+++|||+|++.-
T Consensus 154 ~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~--~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~ 231 (505)
T TIGR00595 154 LLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLA--AGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVS 231 (505)
T ss_pred EeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHH--cCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCc
Confidence 22222 22222 12211111 100111 222333333332 24689999776432
Q ss_pred ---------------------------------------HHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHH--HHH
Q 035699 531 ---------------------------------------FETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQ--AKI 569 (633)
Q Consensus 531 ---------------------------------------ie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R--~~i 569 (633)
++.+++.|...+ |+..|..+|+++++..+ ..+
T Consensus 232 l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~f-------p~~~v~~~d~d~~~~~~~~~~~ 304 (505)
T TIGR00595 232 LTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLF-------PGARIARIDSDTTSRKGAHEAL 304 (505)
T ss_pred eEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhC-------CCCcEEEEecccccCccHHHHH
Confidence 577777777654 67899999999988765 789
Q ss_pred hCCCCCCCeeEEEeCCccccCCCCCCccEE--EeCCC
Q 035699 570 FEPTPEGARKVVLATNIAETSLTIDGIKYV--IDPGF 604 (633)
Q Consensus 570 ~~~f~~g~rkVLvATdIAerGLdIp~V~~V--ID~G~ 604 (633)
+..|..|...|||+|+++++|+|+|+|++| +|.+.
T Consensus 305 l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~ 341 (505)
T TIGR00595 305 LNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADS 341 (505)
T ss_pred HHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcc
Confidence 999999999999999999999999999988 57664
No 86
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.74 E-value=1.3e-16 Score=183.13 Aligned_cols=258 Identities=14% Similarity=0.113 Sum_probs=165.2
Q ss_pred cCCChHHHHHHHHHHHcC---CeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccc
Q 035699 328 TLPIYPFREELLQAVSEY---PVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGH 404 (633)
Q Consensus 328 ~LPi~~~q~~il~al~~~---~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~ 404 (633)
...+.+||.+.+.++..+ ..-||+.|||+|||.+....+... +++++|++|+.+++.|....+....+...+
T Consensus 253 ~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l----~k~tLILvps~~Lv~QW~~ef~~~~~l~~~- 327 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV----KKSCLVLCTSAVSVEQWKQQFKMWSTIDDS- 327 (732)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh----CCCEEEEeCcHHHHHHHHHHHHHhcCCCCc-
Confidence 456788999988887743 256888999999997755444322 247999999999999999888776554433
Q ss_pred eEeeeeeccc-ccCCCCcEEEeCchHHHHHHhcC-------CCC--CCceeee-eecccCC------------CccEEEe
Q 035699 405 EVGYSIRFED-CTSDKTVLKYMTDGMLLREIVLE-------PSL--ESYSVLI-DLINYRP------------DLKLLIS 461 (633)
Q Consensus 405 ~VGy~ir~e~-~~s~~t~Iiv~TpGrLL~~l~~~-------~~L--~~~s~vI-di~~~rp------------dlklil~ 461 (633)
.+|....... .......|+|+|..++....... ..+ ..+.+|| |.+|..| ....+++
T Consensus 328 ~I~~~tg~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~fr~il~~l~a~~RLGL 407 (732)
T TIGR00603 328 QICRFTSDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAMFRRVLTIVQAHCKLGL 407 (732)
T ss_pred eEEEEecCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHHHHHHHHhcCcCcEEEE
Confidence 2332111111 11123679999999875321110 112 3566777 7766432 2357999
Q ss_pred ecccC--HHhHh--hhhCCCCEEEeC-------CeeeeEEE--EEEcCCch---hHHH-----------------HHHHH
Q 035699 462 SATLD--AENFS--DYFGSAPIFKIP-------RRRYHVEL--FYTKAPEA---DYIE-----------------AAIVT 508 (633)
Q Consensus 462 SAT~~--~~~~s--~~f~~~pii~i~-------gr~~pv~~--~y~~~~~~---~yl~-----------------~~v~~ 508 (633)
|||+- -..+. .++-+++++..+ |..-|+.. .+.+.+.. .|+. .++..
T Consensus 408 TATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~~~~ 487 (732)
T TIGR00603 408 TATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQF 487 (732)
T ss_pred eecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHHHHHH
Confidence 99992 22232 233345554442 32233332 22332221 2221 01112
Q ss_pred HHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCC-CeeEEEeCCcc
Q 035699 509 ALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEG-ARKVVLATNIA 587 (633)
Q Consensus 509 l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g-~rkVLvATdIA 587 (633)
++..|. ....++|||+.+...++.++..| + +..|||++++.+|..+++.|+.| ..++||+|+|+
T Consensus 488 Li~~he-~~g~kiLVF~~~~~~l~~~a~~L------------~--~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVg 552 (732)
T TIGR00603 488 LIRFHE-QRGDKIIVFSDNVFALKEYAIKL------------G--KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVG 552 (732)
T ss_pred HHHHHh-hcCCeEEEEeCCHHHHHHHHHHc------------C--CceEECCCCHHHHHHHHHHHHhCCCccEEEEeccc
Confidence 333332 24579999999988877777665 1 24589999999999999999865 77999999999
Q ss_pred ccCCCCCCccEEEeCCCC
Q 035699 588 ETSLTIDGIKYVIDPGFA 605 (633)
Q Consensus 588 erGLdIp~V~~VID~G~~ 605 (633)
.+|||+|++++||+...+
T Consensus 553 deGIDlP~a~vvI~~s~~ 570 (732)
T TIGR00603 553 DTSIDLPEANVLIQISSH 570 (732)
T ss_pred ccccCCCCCCEEEEeCCC
Confidence 999999999999986544
No 87
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.71 E-value=2.2e-16 Score=178.85 Aligned_cols=274 Identities=20% Similarity=0.227 Sum_probs=170.8
Q ss_pred HccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHh-ccccCCeeeecchhHHHHHHHHHHHHHHhCCcccc
Q 035699 326 RKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEA-GYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGH 404 (633)
Q Consensus 326 r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~-~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~ 404 (633)
-..+|+-.||.+|...-+ ++++||++|||||||......+++. -+...++|+++.|++-+..|..+ ....+|.+...
T Consensus 58 p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a-~~~~~~~~~~~ 135 (746)
T KOG0354|consen 58 PTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIA-CFSIYLIPYSV 135 (746)
T ss_pred cCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHH-HHhhccCcccc
Confidence 356888999999998888 8899999999999997655444433 24455799999999999888764 33445544221
Q ss_pred eEeeeeecccccC------CCCcEEEeCchHHHHHHhcCC--CCCCceeee-eecccC------------------CCcc
Q 035699 405 EVGYSIRFEDCTS------DKTVLKYMTDGMLLREIVLEP--SLESYSVLI-DLINYR------------------PDLK 457 (633)
Q Consensus 405 ~VGy~ir~e~~~s------~~t~Iiv~TpGrLL~~l~~~~--~L~~~s~vI-di~~~r------------------pdlk 457 (633)
.| ...+....+ ...+|.|+||..|..-|.+.- .|+.++++| |.+|.- ...|
T Consensus 136 -T~-~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~q 213 (746)
T KOG0354|consen 136 -TG-QLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGNQ 213 (746)
T ss_pred -ee-eccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhcccc
Confidence 11 111111111 246899999999999887543 478899998 666532 1238
Q ss_pred EEEeeccc--CHHhHhhhhCC------CCEEEeC---------CeeeeEEE-----------------------------
Q 035699 458 LLISSATL--DAENFSDYFGS------APIFKIP---------RRRYHVEL----------------------------- 491 (633)
Q Consensus 458 lil~SAT~--~~~~~s~~f~~------~pii~i~---------gr~~pv~~----------------------------- 491 (633)
+|.+|||+ +.+....+..+ ....... -...|+++
T Consensus 214 ILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~ 293 (746)
T KOG0354|consen 214 ILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIE 293 (746)
T ss_pred EEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCccc
Confidence 99999999 33333332211 0000000 00001110
Q ss_pred ------EEE---------cCC-----c----------------------------------------hhH----------
Q 035699 492 ------FYT---------KAP-----E----------------------------------------ADY---------- 501 (633)
Q Consensus 492 ------~y~---------~~~-----~----------------------------------------~~y---------- 501 (633)
.|. ..+ . ..|
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~ 373 (746)
T KOG0354|consen 294 ISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLI 373 (746)
T ss_pred cccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhh
Confidence 000 000 0 000
Q ss_pred -----------------------HHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEecc
Q 035699 502 -----------------------IEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIY 558 (633)
Q Consensus 502 -----------------------l~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lH 558 (633)
+......+.......+...+|||+.+++.+..+..+|..... +|-+ ++.-|..-+
T Consensus 374 ~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~-~~ir-~~~fiGq~~ 451 (746)
T KOG0354|consen 374 RNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHE-LGIK-AEIFIGQGK 451 (746)
T ss_pred HHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhh-cccc-cceeeeccc
Confidence 000011111112223346799999999999999999985221 1110 111122211
Q ss_pred ----CCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCC
Q 035699 559 ----GNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFA 605 (633)
Q Consensus 559 ----g~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~ 605 (633)
.+|+|.+|.++++.|+.|..+|||||.|||-||||+.+++||-+|.+
T Consensus 452 s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~ 502 (746)
T KOG0354|consen 452 STQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYS 502 (746)
T ss_pred cccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCC
Confidence 48999999999999999999999999999999999999999975544
No 88
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.71 E-value=1.4e-16 Score=178.15 Aligned_cols=235 Identities=15% Similarity=0.145 Sum_probs=168.2
Q ss_pred EEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHh---CCcccceEeeeeeccc------ccCCC
Q 035699 349 VIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEM---GVKLGHEVGYSIRFED------CTSDK 419 (633)
Q Consensus 349 Ii~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~---g~~vg~~VGy~ir~e~------~~s~~ 419 (633)
+++|..|||||......++.. +..+.++....||.+||.|.+..+...+ |..++..+|...+... ..+..
T Consensus 287 LlQGDVGSGKTvVA~laml~a-i~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~ 365 (677)
T COG1200 287 LLQGDVGSGKTVVALLAMLAA-IEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGE 365 (677)
T ss_pred HhccCcCCCHHHHHHHHHHHH-HHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCC
Confidence 578999999998766665544 4445589999999999999998877765 4444444442111111 11345
Q ss_pred CcEEEeCchHHHHHHhcCCCCCCceeee-eecccC------------C-CccEEEeecccCHHhHh-hhhCCCCE---EE
Q 035699 420 TVLKYMTDGMLLREIVLEPSLESYSVLI-DLINYR------------P-DLKLLISSATLDAENFS-DYFGSAPI---FK 481 (633)
Q Consensus 420 t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-di~~~r------------p-dlklil~SAT~~~~~~s-~~f~~~pi---i~ 481 (633)
.+|+|+|--.+ +.+-.+.++..+| |..|.. + ...+++||||+-+..++ ..|++-.+ -.
T Consensus 366 ~~ivVGTHALi----Qd~V~F~~LgLVIiDEQHRFGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdE 441 (677)
T COG1200 366 IDIVVGTHALI----QDKVEFHNLGLVIIDEQHRFGVHQRLALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDE 441 (677)
T ss_pred CCEEEEcchhh----hcceeecceeEEEEeccccccHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhcc
Confidence 89999997633 3334788999888 655432 3 46899999999777666 45655443 33
Q ss_pred eCCeeeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHH--------HHHHHHHHHhhcccCCCCCceE
Q 035699 482 IPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQF--------ETAEEILKQRTRGLGTKIAELI 553 (633)
Q Consensus 482 i~gr~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~ei--------e~l~~~L~~~~~~l~~~~~~~~ 553 (633)
.|..+.|+.....+....+.+-+ .+..-+. ...++.|-||=.++- +.+++.|+..+ +++.
T Consensus 442 lP~GRkpI~T~~i~~~~~~~v~e---~i~~ei~--~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~-------~~~~ 509 (677)
T COG1200 442 LPPGRKPITTVVIPHERRPEVYE---RIREEIA--KGRQAYVVCPLIEESEKLELQAAEELYEELKSFL-------PELK 509 (677)
T ss_pred CCCCCCceEEEEeccccHHHHHH---HHHHHHH--cCCEEEEEeccccccccchhhhHHHHHHHHHHHc-------ccce
Confidence 46667899998888655444333 2322222 346788989877654 45556665433 6889
Q ss_pred EEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEE
Q 035699 554 ICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVI 600 (633)
Q Consensus 554 v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VI 600 (633)
|..+||.|++++...+|+.|+.|...|||||.|.|.|+|+|+.++.|
T Consensus 510 vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMV 556 (677)
T COG1200 510 VGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMV 556 (677)
T ss_pred eEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEE
Confidence 99999999999999999999999999999999999999999998766
No 89
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.71 E-value=2.2e-16 Score=180.84 Aligned_cols=273 Identities=17% Similarity=0.164 Sum_probs=184.5
Q ss_pred HHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhcc--------ccCC-eeeecchhHHHHHHHHHHHHHHhCCcccceE
Q 035699 336 EELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGY--------TKQG-KIGCTQLRRVAAMSVAARVSQEMGVKLGHEV 406 (633)
Q Consensus 336 ~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~--------~~~g-kilitqPrR~aA~qva~rva~e~g~~vg~~V 406 (633)
.-+..+-.++.+.+||||||||||-.+.+.++...- .+++ +|+++.|.++||-.++..+.+.++ .+|..|
T Consensus 117 ~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~-~~gi~v 195 (1230)
T KOG0952|consen 117 EVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLA-PLGISV 195 (1230)
T ss_pred HhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcc-cccceE
Confidence 445667788999999999999999776666654322 1223 999999999999999888877663 334455
Q ss_pred eeeeeccccc----CCCCcEEEeCchHHHHHH---hcCC-CCCCceeee-eecccC-----------------------C
Q 035699 407 GYSIRFEDCT----SDKTVLKYMTDGMLLREI---VLEP-SLESYSVLI-DLINYR-----------------------P 454 (633)
Q Consensus 407 Gy~ir~e~~~----s~~t~Iiv~TpGrLL~~l---~~~~-~L~~~s~vI-di~~~r-----------------------p 454 (633)
+- ..++... -..|+|+|.||.-.--.- .++. ..+.+..|| |..|.. .
T Consensus 196 ~E-LTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs 274 (1230)
T KOG0952|consen 196 RE-LTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQS 274 (1230)
T ss_pred EE-ecCcchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhh
Confidence 42 2233322 246999999998643110 1111 234445555 544432 2
Q ss_pred CccEEEeeccc-CHHhHhhhhCCC---CEEEeCCeee--eEEEEEEcCCch-------hHHHHHHHHHHHHHhcCCCCCE
Q 035699 455 DLKLLISSATL-DAENFSDYFGSA---PIFKIPRRRY--HVELFYTKAPEA-------DYIEAAIVTALQIHVNEPIGDI 521 (633)
Q Consensus 455 dlklil~SAT~-~~~~~s~~f~~~---pii~i~gr~~--pv~~~y~~~~~~-------~yl~~~v~~l~~i~~~~~~g~i 521 (633)
-+++|.+|||+ |.+.++.|+.-. -++...++.. |....+.-.+.. +.-..+...+...+ +.+.++
T Consensus 275 ~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~--~~g~qV 352 (1230)
T KOG0952|consen 275 MIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFL--QEGHQV 352 (1230)
T ss_pred heEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHH--HcCCeE
Confidence 35899999999 889999999753 3566666543 444444433322 11112233344444 234689
Q ss_pred EEEcCcHHHHHHHHHHHHHhhcccCCCC-----C--c-------eEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCcc
Q 035699 522 LVFLTGQDQFETAEEILKQRTRGLGTKI-----A--E-------LIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIA 587 (633)
Q Consensus 522 LVFl~t~~eie~l~~~L~~~~~~l~~~~-----~--~-------~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIA 587 (633)
+|||+++.+....++.|.+.....|... + + ..+..+|++|+-..|......|..|..+||+||..+
T Consensus 353 lvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTL 432 (1230)
T KOG0952|consen 353 LVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATL 432 (1230)
T ss_pred EEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEeccee
Confidence 9999999999999999988765433321 1 1 346678999999999999999999999999999999
Q ss_pred ccCCCCCCccEEEeCCCCccccccCCCCc
Q 035699 588 ETSLTIDGIKYVIDPGFAKVKSYNPKTGM 616 (633)
Q Consensus 588 erGLdIp~V~~VID~G~~k~~~yd~~~g~ 616 (633)
+-|++.|.=-++| =| +..||+..|.
T Consensus 433 AwGVNLPA~aViI-KG---T~~ydsskg~ 457 (1230)
T KOG0952|consen 433 AWGVNLPAYAVII-KG---TQVYDSSKGS 457 (1230)
T ss_pred eeccCCcceEEEe-cC---CcccccccCc
Confidence 9999999544444 22 4568777654
No 90
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.71 E-value=9.3e-18 Score=166.86 Aligned_cols=247 Identities=15% Similarity=0.203 Sum_probs=164.9
Q ss_pred HHHHHHHHccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCC--eeeecchhHHHHHHHHH---H
Q 035699 319 LEMLQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQG--KIGCTQLRRVAAMSVAA---R 393 (633)
Q Consensus 319 ~~~l~~~r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~g--kilitqPrR~aA~qva~---r 393 (633)
..+|-.---.-|...+++-|+++|.+-+ |+++|..|-|||..|.+.-+...-.-+| .++|++-||+||.|+.+ |
T Consensus 54 lraivdcgfehpsevqhecipqailgmd-vlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~r 132 (387)
T KOG0329|consen 54 LRAIVDCGFEHPSEVQHECIPQAILGMD-VLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYER 132 (387)
T ss_pred HHHHHhccCCCchHhhhhhhhHHhhcch-hheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHH
Confidence 3344333335688889999999999876 8899999999999888776666444455 78999999999999964 5
Q ss_pred HHHHh-CCcccceEe-eeeecccc-cCCCCcEEEeCchHHHHHHhcCC-CCCCceeee------------------eecc
Q 035699 394 VSQEM-GVKLGHEVG-YSIRFEDC-TSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI------------------DLIN 451 (633)
Q Consensus 394 va~e~-g~~vg~~VG-y~ir~e~~-~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI------------------di~~ 451 (633)
+++.| ++++....| ..|..+.. ....++|+|+|||+++-+..+.. +|.++.++| +|.+
T Consensus 133 fskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr 212 (387)
T KOG0329|consen 133 FSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFR 212 (387)
T ss_pred HHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHHHHhh
Confidence 66666 444433333 44443322 24578999999999999887766 899999988 2333
Q ss_pred cCC-CccEEEeecccC--HHhHhh-hhCCCCEEEeCC----eeeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEE
Q 035699 452 YRP-DLKLLISSATLD--AENFSD-YFGSAPIFKIPR----RRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILV 523 (633)
Q Consensus 452 ~rp-dlklil~SAT~~--~~~~s~-~f~~~pii~i~g----r~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLV 523 (633)
..| +-|++.||||+. ....+. |+-++--+.+.. ..+.+.+||.+..+... -..+.+++......+++|
T Consensus 213 ~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eK----Nrkl~dLLd~LeFNQVvI 288 (387)
T KOG0329|consen 213 MTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEK----NRKLNDLLDVLEFNQVVI 288 (387)
T ss_pred cCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhh----hhhhhhhhhhhhhcceeE
Confidence 344 567888999994 344444 443333233322 12334556655432221 112333333334567899
Q ss_pred EcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCC
Q 035699 524 FLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPG 603 (633)
Q Consensus 524 Fl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G 603 (633)
|+.+... ++ | ..+ +||||+..||+||.-|+.|+|++
T Consensus 289 FvKsv~R------------------------------l~----------f---~kr-~vat~lfgrgmdiervNi~~NYd 324 (387)
T KOG0329|consen 289 FVKSVQR------------------------------LS----------F---QKR-LVATDLFGRGMDIERVNIVFNYD 324 (387)
T ss_pred eeehhhh------------------------------hh----------h---hhh-hHHhhhhccccCcccceeeeccC
Confidence 9877543 00 1 123 89999999999999999999999
Q ss_pred CCccc-cccCCC
Q 035699 604 FAKVK-SYNPKT 614 (633)
Q Consensus 604 ~~k~~-~yd~~~ 614 (633)
+|... +|-++.
T Consensus 325 mp~~~DtYlHrv 336 (387)
T KOG0329|consen 325 MPEDSDTYLHRV 336 (387)
T ss_pred CCCCchHHHHHh
Confidence 99875 466654
No 91
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.70 E-value=1.8e-16 Score=177.38 Aligned_cols=264 Identities=15% Similarity=0.112 Sum_probs=169.2
Q ss_pred HHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccceEeeeeeccc
Q 035699 335 REELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFED 414 (633)
Q Consensus 335 q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~VGy~ir~e~ 414 (633)
|++++.++.+++++++.=|||.||+..+-+|.+-. .|-.+|+.|--.|-.....++ ...|+.....-+.....+.
T Consensus 22 Q~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~----~G~TLVVSPLiSLM~DQV~~l-~~~Gi~A~~lnS~l~~~e~ 96 (590)
T COG0514 22 QQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL----EGLTLVVSPLISLMKDQVDQL-EAAGIRAAYLNSTLSREER 96 (590)
T ss_pred HHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc----CCCEEEECchHHHHHHHHHHH-HHcCceeehhhcccCHHHH
Confidence 78999999999999999999999997544443211 346889999766654433323 2234332110000011111
Q ss_pred c------cCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eecc---------------------cCCCccEEEeeccc
Q 035699 415 C------TSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLIN---------------------YRPDLKLLISSATL 465 (633)
Q Consensus 415 ~------~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~~---------------------~rpdlklil~SAT~ 465 (633)
. ......|+|-+|.+|..-...+. .-..++.++ |.+| ..|+..++.++||.
T Consensus 97 ~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlTATA 176 (590)
T COG0514 97 QQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVLALTATA 176 (590)
T ss_pred HHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCCEEEEeCCC
Confidence 0 12346899999999864321111 133344444 4443 23556889999999
Q ss_pred CHHh---Hhhhh-CCCCEEEeCCeeeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHh
Q 035699 466 DAEN---FSDYF-GSAPIFKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQR 541 (633)
Q Consensus 466 ~~~~---~s~~f-~~~pii~i~gr~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~ 541 (633)
+... +..-+ .+.+.+.+.+... ..++|...+..+-... +..+.. +.....+..||||.|+..++.+++.|...
T Consensus 177 ~~~v~~DI~~~L~l~~~~~~~~sfdR-pNi~~~v~~~~~~~~q-~~fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L~~~ 253 (590)
T COG0514 177 TPRVRDDIREQLGLQDANIFRGSFDR-PNLALKVVEKGEPSDQ-LAFLAT-VLPQLSKSGIIYCLTRKKVEELAEWLRKN 253 (590)
T ss_pred ChHHHHHHHHHhcCCCcceEEecCCC-chhhhhhhhcccHHHH-HHHHHh-hccccCCCeEEEEeeHHhHHHHHHHHHHC
Confidence 7533 33333 3333222221111 1222322221111111 111111 22455677999999999999999999884
Q ss_pred hcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCcccc-ccCCCC
Q 035699 542 TRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVKS-YNPKTG 615 (633)
Q Consensus 542 ~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~~-yd~~~g 615 (633)
++.+.++||+|+.++|..+.+.|-++..+|+|||+....|||.|||.+||++++|.... |--.+|
T Consensus 254 ---------g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~G 319 (590)
T COG0514 254 ---------GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETG 319 (590)
T ss_pred ---------CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999998753 654443
No 92
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=3e-16 Score=181.53 Aligned_cols=250 Identities=18% Similarity=0.151 Sum_probs=163.8
Q ss_pred HccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccce
Q 035699 326 RKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHE 405 (633)
Q Consensus 326 r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~ 405 (633)
++.|=+.||--+++-++.=|+--|....||+|||.++..+++-..+. +..+.|+.|++.||.+.+..+...+ ..+|..
T Consensus 75 ~R~lg~~~~dvQlig~l~L~~G~Iaem~TGeGKTLva~lpa~l~aL~-G~~V~IvTpn~yLA~rd~e~~~~l~-~~LGls 152 (830)
T PRK12904 75 KRVLGMRHFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNALT-GKGVHVVTVNDYLAKRDAEWMGPLY-EFLGLS 152 (830)
T ss_pred HHHhCCCCCccHHHhhHHhcCCchhhhhcCCCcHHHHHHHHHHHHHc-CCCEEEEecCHHHHHHHHHHHHHHH-hhcCCe
Confidence 44555555555566655555556889999999999877776432233 2357799999999999888665543 334555
Q ss_pred Eeeeeeccccc----CCCCcEEEeCchHH-HHHHhcCC-------CCCCceeee--------------------------
Q 035699 406 VGYSIRFEDCT----SDKTVLKYMTDGML-LREIVLEP-------SLESYSVLI-------------------------- 447 (633)
Q Consensus 406 VGy~ir~e~~~----s~~t~Iiv~TpGrL-L~~l~~~~-------~L~~~s~vI-------------------------- 447 (633)
||+.+...+.. .-.++|+|+|||.| +++|..+- .+..+.++|
T Consensus 153 v~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~~~~~ 232 (830)
T PRK12904 153 VGVILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSS 232 (830)
T ss_pred EEEEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECCCCccc
Confidence 55444332211 12489999999999 88875442 244555555
Q ss_pred --------------------------------------------------------------------------------
Q 035699 448 -------------------------------------------------------------------------------- 447 (633)
Q Consensus 448 -------------------------------------------------------------------------------- 447 (633)
T Consensus 233 ~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dg 312 (830)
T PRK12904 233 ELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYIVKDG 312 (830)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECC
Confidence
Q ss_pred -----ee-----c---------c----------cCCC----------------ccEEEeecccC--HHhHhhhhCCCCEE
Q 035699 448 -----DL-----I---------N----------YRPD----------------LKLLISSATLD--AENFSDYFGSAPIF 480 (633)
Q Consensus 448 -----di-----~---------~----------~rpd----------------lklil~SAT~~--~~~~s~~f~~~pii 480 (633)
|. . | ..|. .++..||.|.. .+.|.+.+ +-+++
T Consensus 313 ~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY-~l~vv 391 (830)
T PRK12904 313 EVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIY-NLDVV 391 (830)
T ss_pred EEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHh-CCCEE
Confidence 00 0 0 0000 14556666662 23444443 45666
Q ss_pred EeCCee------eeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEE
Q 035699 481 KIPRRR------YHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELII 554 (633)
Q Consensus 481 ~i~gr~------~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v 554 (633)
.||... +|-.++. .....+.+.+..+...|. ...++||||+|.+.++.++..|... ++++
T Consensus 392 ~IPtnkp~~r~d~~d~i~~---t~~~K~~aI~~~I~~~~~--~grpVLIft~Si~~se~Ls~~L~~~---------gi~~ 457 (830)
T PRK12904 392 VIPTNRPMIRIDHPDLIYK---TEKEKFDAVVEDIKERHK--KGQPVLVGTVSIEKSELLSKLLKKA---------GIPH 457 (830)
T ss_pred EcCCCCCeeeeeCCCeEEE---CHHHHHHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHC---------CCce
Confidence 666532 1112221 223445554555544443 3468999999999999999999884 7889
Q ss_pred EeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCC
Q 035699 555 CPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTID 594 (633)
Q Consensus 555 ~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp 594 (633)
..|||. +.+|...+..|..+...|+||||+|+||+||+
T Consensus 458 ~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~ 495 (830)
T PRK12904 458 NVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIK 495 (830)
T ss_pred EeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCcc
Confidence 999996 77888889999999999999999999999997
No 93
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.69 E-value=7e-17 Score=170.08 Aligned_cols=235 Identities=16% Similarity=0.202 Sum_probs=155.6
Q ss_pred eeeecchhHHHHHHHHHHHHHHhCC----ccc--ceEeeeeecccc--cCCCCcEEEeCchHHHHHHhcCC-CCCCceee
Q 035699 376 KIGCTQLRRVAAMSVAARVSQEMGV----KLG--HEVGYSIRFEDC--TSDKTVLKYMTDGMLLREIVLEP-SLESYSVL 446 (633)
Q Consensus 376 kilitqPrR~aA~qva~rva~e~g~----~vg--~~VGy~ir~e~~--~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~v 446 (633)
..+|+.|.|++|.|+...+.+..-. .+- ..+|-....+.| ..++++|+|+|||||++.+.... .|.++.++
T Consensus 288 ~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crFl 367 (725)
T KOG0349|consen 288 EAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRFL 367 (725)
T ss_pred ceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEEE
Confidence 7899999999999999876553211 111 112211111122 24789999999999999988766 78888888
Q ss_pred e-ee------------c-cc----------CCCccEEEeeccc---CHHhHhhhhCCCCE-EEeCCee-eeEEEEEE---
Q 035699 447 I-DL------------I-NY----------RPDLKLLISSATL---DAENFSDYFGSAPI-FKIPRRR-YHVELFYT--- 494 (633)
Q Consensus 447 I-di------------~-~~----------rpdlklil~SAT~---~~~~~s~~f~~~pi-i~i~gr~-~pv~~~y~--- 494 (633)
+ |. + ++ -..++.+++|||+ ++.++++-.-.-|+ +...|.. .|-.+|..
T Consensus 368 vlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv~l 447 (725)
T KOG0349|consen 368 VLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVKL 447 (725)
T ss_pred EecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccceee
Confidence 8 11 1 11 1236889999998 44555532211111 1111100 01000000
Q ss_pred -------------------cCCc----------hhHHHHHHHHH-----HHHHhcCCCCCEEEEcCcHHHHHHHHHHHHH
Q 035699 495 -------------------KAPE----------ADYIEAAIVTA-----LQIHVNEPIGDILVFLTGQDQFETAEEILKQ 540 (633)
Q Consensus 495 -------------------~~~~----------~~yl~~~v~~l-----~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~ 540 (633)
..+. ...+..++..+ +.....+.-.++||||.|..+|+.+.+++.+
T Consensus 448 v~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~q 527 (725)
T KOG0349|consen 448 VCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQ 527 (725)
T ss_pred cCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHH
Confidence 0000 11112222221 1122333447899999999999999999988
Q ss_pred hhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCcccc-ccCCCCc
Q 035699 541 RTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVKS-YNPKTGM 616 (633)
Q Consensus 541 ~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~~-yd~~~g~ 616 (633)
.- ...+.++++||++.+.+|..-++.|+.+..+.|||||||+|||||.++-||||.-+|.++. |-++.|.
T Consensus 528 kg------g~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigr 598 (725)
T KOG0349|consen 528 KG------GKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGR 598 (725)
T ss_pred cC------CccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhc
Confidence 52 2579999999999889999999999999999999999999999999999999999998854 9998874
No 94
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.69 E-value=6.8e-16 Score=180.93 Aligned_cols=232 Identities=19% Similarity=0.234 Sum_probs=178.7
Q ss_pred EEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHh-CCcccceEeeeeeccccc----------C
Q 035699 349 VIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEM-GVKLGHEVGYSIRFEDCT----------S 417 (633)
Q Consensus 349 Ii~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~-g~~vg~~VGy~ir~e~~~----------s 417 (633)
+|||..|=|||....-....+ ...+++|.+++||-+||.|-++.+.+.| |.++ .|+.--||-... .
T Consensus 619 LiCGDVGFGKTEVAmRAAFkA-V~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV--~I~~LSRF~s~kE~~~il~~la~ 695 (1139)
T COG1197 619 LICGDVGFGKTEVAMRAAFKA-VMDGKQVAVLVPTTLLAQQHYETFKERFAGFPV--RIEVLSRFRSAKEQKEILKGLAE 695 (1139)
T ss_pred eeecCcCCcHHHHHHHHHHHH-hcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCe--eEEEecccCCHHHHHHHHHHHhc
Confidence 789999999998877666554 3445599999999999999999998877 3443 455445555422 3
Q ss_pred CCCcEEEeCchHHHHHHhcCCCCCCceeee-ee------------cccCCCccEEEeecccCHHhHhhhh---CCCCEEE
Q 035699 418 DKTVLKYMTDGMLLREIVLEPSLESYSVLI-DL------------INYRPDLKLLISSATLDAENFSDYF---GSAPIFK 481 (633)
Q Consensus 418 ~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-di------------~~~rpdlklil~SAT~~~~~~s~~f---~~~pii~ 481 (633)
.+.+|+|||-- +|..+-.+.++..|| |. -..+.+..++-||||+-+..+.--+ .+-.+|.
T Consensus 696 G~vDIvIGTHr----LL~kdv~FkdLGLlIIDEEqRFGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~ 771 (1139)
T COG1197 696 GKVDIVIGTHR----LLSKDVKFKDLGLLIIDEEQRFGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIA 771 (1139)
T ss_pred CCccEEEechH----hhCCCcEEecCCeEEEechhhcCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhcc
Confidence 46799999964 334455788999988 22 2345778899999999776666443 3445555
Q ss_pred e-CCeeeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCC
Q 035699 482 I-PRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGN 560 (633)
Q Consensus 482 i-~gr~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~ 560 (633)
. |..++||..+..+... ..+.+++. .-+ ...|++..-.|..++|+.+++.|++.. |+..|...||.
T Consensus 772 TPP~~R~pV~T~V~~~d~-~~ireAI~---REl--~RgGQvfYv~NrV~~Ie~~~~~L~~LV-------PEarI~vaHGQ 838 (1139)
T COG1197 772 TPPEDRLPVKTFVSEYDD-LLIREAIL---REL--LRGGQVFYVHNRVESIEKKAERLRELV-------PEARIAVAHGQ 838 (1139)
T ss_pred CCCCCCcceEEEEecCCh-HHHHHHHH---HHH--hcCCEEEEEecchhhHHHHHHHHHHhC-------CceEEEEeecC
Confidence 5 4578999999887442 22222221 111 246999999999999999999999986 79999999999
Q ss_pred CCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEE
Q 035699 561 LPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVI 600 (633)
Q Consensus 561 l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VI 600 (633)
|+..+-..+|..|-+|...|||||.|.|+|||||+++..|
T Consensus 839 M~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiI 878 (1139)
T COG1197 839 MRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTII 878 (1139)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEE
Confidence 9999999999999999999999999999999999999877
No 95
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.65 E-value=5.6e-15 Score=167.74 Aligned_cols=268 Identities=15% Similarity=0.196 Sum_probs=190.1
Q ss_pred cCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccceEe
Q 035699 328 TLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVG 407 (633)
Q Consensus 328 ~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~VG 407 (633)
.+-+..+|.+.+-++..|..|+|.|+|.+|||.. .-|..-....+..+.++|.|-+.|..|-+.-+.+.+|. ||
T Consensus 295 pFelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvV-AEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF~D-----vg 368 (1248)
T KOG0947|consen 295 PFELDTFQKEAIYHLERGDSVFVAAHTSAGKTVV-AEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETFGD-----VG 368 (1248)
T ss_pred CCCccHHHHHHHHHHHcCCeEEEEecCCCCcchH-HHHHHHHHHhhccceEecchhhhhccchHHHHHHhccc-----cc
Confidence 4556778999999999999999999999999954 22322111222338999999999999998888877763 44
Q ss_pred eeeecccccCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-ee-----------------cccCCCccEEEeeccc-CH
Q 035699 408 YSIRFEDCTSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DL-----------------INYRPDLKLLISSATL-DA 467 (633)
Q Consensus 408 y~ir~e~~~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di-----------------~~~rpdlklil~SAT~-~~ 467 (633)
-+.++-...+.+.++|||..+|-.++.++. .+.++..|| |. +-..+++++|++|||+ |.
T Consensus 369 -LlTGDvqinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~IlLSATVPN~ 447 (1248)
T KOG0947|consen 369 -LLTGDVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNFILLSATVPNT 447 (1248)
T ss_pred -eeecceeeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccceEEEEeccCCCh
Confidence 455666677889999999999999998887 467888888 22 2234578999999999 88
Q ss_pred HhHhhhhCCC---CEE--EeCCeeeeEEEEEEcCCc--------------------------hhHH--------------
Q 035699 468 ENFSDYFGSA---PIF--KIPRRRYHVELFYTKAPE--------------------------ADYI-------------- 502 (633)
Q Consensus 468 ~~~s~~f~~~---pii--~i~gr~~pv~~~y~~~~~--------------------------~~yl-------------- 502 (633)
..|+.|.+.. .|. ..+.|..|.+++.-...+ +.+.
T Consensus 448 ~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~ 527 (1248)
T KOG0947|consen 448 LEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQ 527 (1248)
T ss_pred HHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccccccccccccccccccc
Confidence 9999998643 233 334455666544311000 0000
Q ss_pred ---------------------HH---HHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhh----------------
Q 035699 503 ---------------------EA---AIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRT---------------- 542 (633)
Q Consensus 503 ---------------------~~---~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~---------------- 542 (633)
.. .+..++..+.....-+++|||=++..|+..+++|...-
T Consensus 528 ~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k 607 (1248)
T KOG0947|consen 528 KRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSK 607 (1248)
T ss_pred ccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHH
Confidence 00 01222233333444689999999999999999996320
Q ss_pred --cccCC---CCC---------ceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeC
Q 035699 543 --RGLGT---KIA---------ELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDP 602 (633)
Q Consensus 543 --~~l~~---~~~---------~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~ 602 (633)
..|.. ..| .--+..+||++-+--..-+..-|..|-.|||+||...+.|+++|.-++|+++
T Consensus 608 ~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~S 681 (1248)
T KOG0947|consen 608 AVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSS 681 (1248)
T ss_pred HHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeee
Confidence 00111 111 1237789999999888888888999999999999999999999988888875
No 96
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.65 E-value=2.4e-15 Score=167.14 Aligned_cols=287 Identities=17% Similarity=0.195 Sum_probs=195.2
Q ss_pred ccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccceE
Q 035699 327 KTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEV 406 (633)
Q Consensus 327 ~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~V 406 (633)
.-+-+.++|...+..|.+++.|+|+|+|.+|||.. .-|..-..+..+.+|++|.|-++|..|-+.-+-.+++. |
T Consensus 126 YPF~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVV-AeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF~D-----V 199 (1041)
T KOG0948|consen 126 YPFTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVV-AEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEFKD-----V 199 (1041)
T ss_pred CCcccCchHhhhhhhhcCCceEEEEeecCCCcchH-HHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHHhcc-----c
Confidence 34556789999999999999999999999999953 23332222334459999999999999999989888863 4
Q ss_pred eeeeecccccCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eec-----------------ccCCCccEEEeeccc-C
Q 035699 407 GYSIRFEDCTSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLI-----------------NYRPDLKLLISSATL-D 466 (633)
Q Consensus 407 Gy~ir~e~~~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~-----------------~~rpdlklil~SAT~-~ 466 (633)
|. ..++-..++.+..+|||...|-.++..+. -+..+..|| |.+ -..++.+.+++|||+ |
T Consensus 200 GL-MTGDVTInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~VFLSATiPN 278 (1041)
T KOG0948|consen 200 GL-MTGDVTINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFVFLSATIPN 278 (1041)
T ss_pred ce-eecceeeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccceEEEEeccCCC
Confidence 43 22333446788999999999999998776 578888888 333 334578999999999 8
Q ss_pred HHhHhhhhC-----CCCEEEeCCeeeeEEEEEEcCC---------------chhHHHHHHHH------------------
Q 035699 467 AENFSDYFG-----SAPIFKIPRRRYHVELFYTKAP---------------EADYIEAAIVT------------------ 508 (633)
Q Consensus 467 ~~~~s~~f~-----~~pii~i~gr~~pv~~~y~~~~---------------~~~yl~~~v~~------------------ 508 (633)
+..|++|.- .|.++...=|.-|+.++.-|.. +.|+.. +...
T Consensus 279 A~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~-am~~l~~~~~~~~~~~~~~k~~ 357 (1041)
T KOG0948|consen 279 ARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQK-AMSVLRKAGESDGKKKANKKGR 357 (1041)
T ss_pred HHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHH-HHHHhhccCCCccccccccccc
Confidence 999999872 4556665555555554422211 112211 1111
Q ss_pred ----------------HHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhh------------------cccCCCCCce--
Q 035699 509 ----------------ALQIHVNEPIGDILVFLTGQDQFETAEEILKQRT------------------RGLGTKIAEL-- 552 (633)
Q Consensus 509 ----------------l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~------------------~~l~~~~~~~-- 552 (633)
++.........++|||.=++.+|+.++-.+.+.- ..|.....++
T Consensus 358 kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPq 437 (1041)
T KOG0948|consen 358 KGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQ 437 (1041)
T ss_pred cCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchH
Confidence 1111111223579999999999999988775421 1122222111
Q ss_pred ----------EEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccccccCCCCceeeeee
Q 035699 553 ----------IICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVKSYNPKTGMESLLVN 622 (633)
Q Consensus 553 ----------~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~~yd~~~g~~~l~~~ 622 (633)
-|..+||||-+-...-|.--|..|-.|||+||...+-||++|.-+ ||=+. ...||-. .-+
T Consensus 438 ie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkT-VvFT~---~rKfDG~------~fR 507 (1041)
T KOG0948|consen 438 IENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKT-VVFTA---VRKFDGK------KFR 507 (1041)
T ss_pred HHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCccee-EEEee---ccccCCc------cee
Confidence 256689999998877776779999999999999999999999544 44332 2335542 345
Q ss_pred eccHHHHhh
Q 035699 623 PISKASANQ 631 (633)
Q Consensus 623 ~iSka~a~Q 631 (633)
|||-.+-.|
T Consensus 508 wissGEYIQ 516 (1041)
T KOG0948|consen 508 WISSGEYIQ 516 (1041)
T ss_pred eecccceEE
Confidence 666655554
No 97
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.64 E-value=2.8e-15 Score=173.37 Aligned_cols=83 Identities=17% Similarity=0.119 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCe
Q 035699 499 ADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGAR 578 (633)
Q Consensus 499 ~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~r 578 (633)
...+.+.+..+..+|.. .-+|||||+|...++.++..|... ++....|||++++.++..+.+.|.+|.
T Consensus 432 ~~K~~Aii~ei~~~~~~--GrpVLV~t~sv~~se~ls~~L~~~---------gi~~~vLnak~~~~Ea~ii~~Ag~~G~- 499 (908)
T PRK13107 432 DEKYQAIIKDIKDCRER--GQPVLVGTVSIEQSELLARLMVKE---------KIPHEVLNAKFHEREAEIVAQAGRTGA- 499 (908)
T ss_pred HHHHHHHHHHHHHHHHc--CCCEEEEeCcHHHHHHHHHHHHHC---------CCCeEeccCcccHHHHHHHHhCCCCCc-
Confidence 44556666777777754 457999999999999999999885 788999999999999999999999998
Q ss_pred eEEEeCCccccCCCCC
Q 035699 579 KVVLATNIAETSLTID 594 (633)
Q Consensus 579 kVLvATdIAerGLdIp 594 (633)
|+||||+|.||+||-
T Consensus 500 -VtIATnmAGRGTDIk 514 (908)
T PRK13107 500 -VTIATNMAGRGTDIV 514 (908)
T ss_pred -EEEecCCcCCCccee
Confidence 999999999999996
No 98
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.62 E-value=2.1e-14 Score=159.13 Aligned_cols=260 Identities=18% Similarity=0.194 Sum_probs=177.7
Q ss_pred HccCCChHHHHHHHHHHHc----CCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCc
Q 035699 326 RKTLPIYPFREELLQAVSE----YPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVK 401 (633)
Q Consensus 326 r~~LPi~~~q~~il~al~~----~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~ 401 (633)
...+...+||++.+.++.+ +.-.+|+.|||+|||......+....- +++|++||++++.|.+.+....++..
T Consensus 32 ~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~----~~Lvlv~~~~L~~Qw~~~~~~~~~~~ 107 (442)
T COG1061 32 AFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR----STLVLVPTKELLDQWAEALKKFLLLN 107 (442)
T ss_pred ccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC----CEEEEECcHHHHHHHHHHHHHhcCCc
Confidence 4556688999999999999 788999999999999877766655422 49999999999999988887777654
Q ss_pred ccceEeeeeecccccCCC-CcEEEeCchHHHHH-HhcCCCCCCceeee-eecccCCC------------cc-EEEeeccc
Q 035699 402 LGHEVGYSIRFEDCTSDK-TVLKYMTDGMLLRE-IVLEPSLESYSVLI-DLINYRPD------------LK-LLISSATL 465 (633)
Q Consensus 402 vg~~VGy~ir~e~~~s~~-t~Iiv~TpGrLL~~-l~~~~~L~~~s~vI-di~~~rpd------------lk-lil~SAT~ 465 (633)
..+|. ..+ .+.+.. ..|+|+|--.+.+. .+......++..|| |.+|..|. .. ++.+|||+
T Consensus 108 --~~~g~-~~~-~~~~~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~~~~LGLTATp 183 (442)
T COG1061 108 --DEIGI-YGG-GEKELEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAAYPRLGLTATP 183 (442)
T ss_pred --cccce-ecC-ceeccCCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHHHHHhhhcccceeeeccCc
Confidence 12221 111 111222 47999999999886 33333444788888 77776543 34 89999997
Q ss_pred ---CHHhHhhhhC--CCCEEEeC-------CeeeeEEEEEEcCC-----chhHH--------------------------
Q 035699 466 ---DAENFSDYFG--SAPIFKIP-------RRRYHVELFYTKAP-----EADYI-------------------------- 502 (633)
Q Consensus 466 ---~~~~~s~~f~--~~pii~i~-------gr~~pv~~~y~~~~-----~~~yl-------------------------- 502 (633)
|......+|. ++.++.++ |-.-|+.......+ ...|.
T Consensus 184 ~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (442)
T COG1061 184 EREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRIA 263 (442)
T ss_pred eeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 3223333332 22333332 22223332222111 00000
Q ss_pred ---HHHHHHHHHHHhcC-CCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCe
Q 035699 503 ---EAAIVTALQIHVNE-PIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGAR 578 (633)
Q Consensus 503 ---~~~v~~l~~i~~~~-~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~r 578 (633)
...+..+..+.... ...++|||+.....+..++..+.. ++. +..+.|..+..+|..+++.|+.|..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~---------~~~-~~~it~~t~~~eR~~il~~fr~g~~ 333 (442)
T COG1061 264 IASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLA---------PGI-VEAITGETPKEEREAILERFRTGGI 333 (442)
T ss_pred hccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcC---------CCc-eEEEECCCCHHHHHHHHHHHHcCCC
Confidence 01111222222222 346899999999999999999865 244 8899999999999999999999899
Q ss_pred eEEEeCCccccCCCCCCccEEEeCC
Q 035699 579 KVVLATNIAETSLTIDGIKYVIDPG 603 (633)
Q Consensus 579 kVLvATdIAerGLdIp~V~~VID~G 603 (633)
++|+++.|+.-|+|+|+++++|=..
T Consensus 334 ~~lv~~~vl~EGvDiP~~~~~i~~~ 358 (442)
T COG1061 334 KVLVTVKVLDEGVDIPDADVLIILR 358 (442)
T ss_pred CEEEEeeeccceecCCCCcEEEEeC
Confidence 9999999999999999999999544
No 99
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.61 E-value=5.7e-14 Score=169.56 Aligned_cols=274 Identities=15% Similarity=0.215 Sum_probs=169.6
Q ss_pred CChHHHHHHHHHHH-----cCCeEEEeccCCChhhchHHHHHHHhc-cccCCeeeecchhHHHHHHHHHHHHHHhCCccc
Q 035699 330 PIYPFREELLQAVS-----EYPVLVIVGETGSGKTTQIPQYLYEAG-YTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLG 403 (633)
Q Consensus 330 Pi~~~q~~il~al~-----~~~~vIi~a~TGSGKTt~lp~~Lle~~-~~~~gkilitqPrR~aA~qva~rva~e~g~~vg 403 (633)
...+||...+.++. +++.++|+.+||||||......+.... ....++|+++.||.+|+.|....+... +...+
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~-~~~~~ 491 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDT-KIEGD 491 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhc-ccccc
Confidence 45778888887765 345688999999999955333322211 112248999999999999998866543 22211
Q ss_pred ceEe--eeeec--ccccCCCCcEEEeCchHHHHHHhcC------CCCCCceeee-eecccC-------------------
Q 035699 404 HEVG--YSIRF--EDCTSDKTVLKYMTDGMLLREIVLE------PSLESYSVLI-DLINYR------------------- 453 (633)
Q Consensus 404 ~~VG--y~ir~--e~~~s~~t~Iiv~TpGrLL~~l~~~------~~L~~~s~vI-di~~~r------------------- 453 (633)
..++ |.+.. +......+.|+|+|...|.+.+... +.+..+++|| |.+|..
T Consensus 492 ~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~ 571 (1123)
T PRK11448 492 QTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQLD 571 (1123)
T ss_pred cchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccchhhh
Confidence 1110 12211 1112345789999999887765321 3567888888 887753
Q ss_pred -----------CCccEEEeecccCHHhHhhhhCCCCEEEe-------CCeee----eEEEE---------EEc-------
Q 035699 454 -----------PDLKLLISSATLDAENFSDYFGSAPIFKI-------PRRRY----HVELF---------YTK------- 495 (633)
Q Consensus 454 -----------pdlklil~SAT~~~~~~s~~f~~~pii~i-------~gr~~----pv~~~---------y~~------- 495 (633)
++..+|+|+||+.... ..+|+ .|++.. .|-.. |+.+. +..
T Consensus 572 ~~~~yr~iL~yFdA~~IGLTATP~r~t-~~~FG-~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~~~ 649 (1123)
T PRK11448 572 YVSKYRRVLDYFDAVKIGLTATPALHT-TEIFG-EPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEVEVI 649 (1123)
T ss_pred HHHHHHHHHhhcCccEEEEecCCccch-hHHhC-CeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchhhhc
Confidence 2456899999995322 34554 344321 12111 11111 000
Q ss_pred -----------CCc-hhHH--------------HHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCC
Q 035699 496 -----------APE-ADYI--------------EAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKI 549 (633)
Q Consensus 496 -----------~~~-~~yl--------------~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~ 549 (633)
.+. .+|. ...+..+...+....+|++||||.+.+.++.+++.|.+......+..
T Consensus 650 ~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~ 729 (1123)
T PRK11448 650 NTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQV 729 (1123)
T ss_pred chhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCc
Confidence 000 0010 01112233323223358999999999999999999987653332333
Q ss_pred CceEEEeccCCCCHHHHHHHhCCCCCCCe-eEEEeCCccccCCCCCCccEEEeCCCCccc
Q 035699 550 AELIICPIYGNLPTELQAKIFEPTPEGAR-KVVLATNIAETSLTIDGIKYVIDPGFAKVK 608 (633)
Q Consensus 550 ~~~~v~~lHg~l~~~~R~~i~~~f~~g~r-kVLvATdIAerGLdIp~V~~VID~G~~k~~ 608 (633)
....+..+||+.+. +..++..|+.+.. +|+|+++++.+|+|+|.|.+||-.-.++..
T Consensus 730 ~~~~v~~itg~~~~--~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~ 787 (1123)
T PRK11448 730 EDDAVIKITGSIDK--PDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSR 787 (1123)
T ss_pred CccceEEEeCCccc--hHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCH
Confidence 34466779999864 5578888988765 799999999999999999999988776543
No 100
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.55 E-value=3.9e-14 Score=163.57 Aligned_cols=105 Identities=20% Similarity=0.188 Sum_probs=86.7
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCe
Q 035699 499 ADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGAR 578 (633)
Q Consensus 499 ~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~r 578 (633)
..++.+.+..+...|. ...++||||+|...++.++..|.+. +++...|||++.+.++..+...+.+|.
T Consensus 423 ~~K~~al~~~i~~~~~--~g~pvLI~t~si~~se~ls~~L~~~---------gi~~~~Lna~~~~~Ea~ii~~ag~~g~- 490 (796)
T PRK12906 423 DSKFNAVVKEIKERHA--KGQPVLVGTVAIESSERLSHLLDEA---------GIPHAVLNAKNHAKEAEIIMNAGQRGA- 490 (796)
T ss_pred HHHHHHHHHHHHHHHh--CCCCEEEEeCcHHHHHHHHHHHHHC---------CCCeeEecCCcHHHHHHHHHhcCCCce-
Confidence 3444554555554443 3578999999999999999999885 788899999999999999999999887
Q ss_pred eEEEeCCccccCCCC---CCcc-----EEEeCCCCccc-cccCCCCc
Q 035699 579 KVVLATNIAETSLTI---DGIK-----YVIDPGFAKVK-SYNPKTGM 616 (633)
Q Consensus 579 kVLvATdIAerGLdI---p~V~-----~VID~G~~k~~-~yd~~~g~ 616 (633)
|+||||+|+||+|| ++|. |||++.+|... .|++..|.
T Consensus 491 -VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GR 536 (796)
T PRK12906 491 -VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGR 536 (796)
T ss_pred -EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhh
Confidence 99999999999999 5999 99999999764 47776654
No 101
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.54 E-value=7.1e-14 Score=133.11 Aligned_cols=137 Identities=19% Similarity=0.148 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhcccc-CCeeeecchhHHHHHHHHHHHHHHhCCcccceEeeee
Q 035699 332 YPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTK-QGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSI 410 (633)
Q Consensus 332 ~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~-~gkilitqPrR~aA~qva~rva~e~g~~vg~~VGy~i 410 (633)
.++|.++++.+.+++++++.||||||||+++..+++...... .++++++.|++.++.+++.++...++. .+..+....
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~~~~~~~~ 79 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSN-TNVRVVLLH 79 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTT-TTSSEEEES
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccc-ccccccccc
Confidence 378999999999999999999999999999998888765443 238999999999999999988777654 222222211
Q ss_pred eccc-------ccCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eec-------------------ccCCCccEEEee
Q 035699 411 RFED-------CTSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLI-------------------NYRPDLKLLISS 462 (633)
Q Consensus 411 r~e~-------~~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~-------------------~~rpdlklil~S 462 (633)
.... ....+++|+|+||++|++.+.... ++.++++|| |.+ ...++.+++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~S 159 (169)
T PF00270_consen 80 GGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLS 159 (169)
T ss_dssp TTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEE
T ss_pred ccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 1111 112468999999999999988643 566688888 222 122468899999
Q ss_pred cccCHHhH
Q 035699 463 ATLDAENF 470 (633)
Q Consensus 463 AT~~~~~~ 470 (633)
||+. ..+
T Consensus 160 AT~~-~~~ 166 (169)
T PF00270_consen 160 ATLP-SNV 166 (169)
T ss_dssp SSST-HHH
T ss_pred eCCC-hhH
Confidence 9997 443
No 102
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.53 E-value=2e-13 Score=161.96 Aligned_cols=116 Identities=9% Similarity=0.060 Sum_probs=95.5
Q ss_pred HHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCC--CCeeEEEe
Q 035699 506 IVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPE--GARKVVLA 583 (633)
Q Consensus 506 v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~--g~rkVLvA 583 (633)
+..++.++......++||||+++..+..+.+.|... .++.++.+||+|++.+|.+++..|.. |...||||
T Consensus 481 i~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~--------~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIs 552 (956)
T PRK04914 481 VEWLIDFLKSHRSEKVLVICAKAATALQLEQALRER--------EGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLC 552 (956)
T ss_pred HHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc--------cCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEe
Confidence 334566666666789999999999999999999653 27899999999999999999999986 46899999
Q ss_pred CCccccCCCCCCccEEEeCCCCccc-cccCCCCce--------eeeeeeccHHHH
Q 035699 584 TNIAETSLTIDGIKYVIDPGFAKVK-SYNPKTGME--------SLLVNPISKASA 629 (633)
Q Consensus 584 TdIAerGLdIp~V~~VID~G~~k~~-~yd~~~g~~--------~l~~~~iSka~a 629 (633)
|+++++|||++.+++|||+++|..+ .|.++.|.. ..+.+|+.+.+.
T Consensus 553 TdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~ 607 (956)
T PRK04914 553 SEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTA 607 (956)
T ss_pred chhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCH
Confidence 9999999999999999999999886 487777653 234455555444
No 103
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.53 E-value=1.8e-13 Score=158.99 Aligned_cols=281 Identities=16% Similarity=0.181 Sum_probs=181.2
Q ss_pred ChHHHHHHHHHHH-cCCeEEEeccCCChhhchHHHHHHHh-c--ccc-------CCeeeecchhHHHHHHHHHHHHHHhC
Q 035699 331 IYPFREELLQAVS-EYPVLVIVGETGSGKTTQIPQYLYEA-G--YTK-------QGKIGCTQLRRVAAMSVAARVSQEMG 399 (633)
Q Consensus 331 i~~~q~~il~al~-~~~~vIi~a~TGSGKTt~lp~~Lle~-~--~~~-------~gkilitqPrR~aA~qva~rva~e~g 399 (633)
....|..+.++.. ...++++|||||+|||-....-+++. + +.. +.+|++..|...|+..+...+++.+
T Consensus 310 LNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRl- 388 (1674)
T KOG0951|consen 310 LNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRL- 388 (1674)
T ss_pred hhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhc-
Confidence 3445666665544 45789999999999997655544432 1 211 1289999999999988777666544
Q ss_pred CcccceEeeeeeccccc---CCCCcEEEeCchHHHHHHhcCC-C---CCCceeee-eeccc-------------------
Q 035699 400 VKLGHEVGYSIRFEDCT---SDKTVLKYMTDGMLLREIVLEP-S---LESYSVLI-DLINY------------------- 452 (633)
Q Consensus 400 ~~vg~~VGy~ir~e~~~---s~~t~Iiv~TpGrLL~~l~~~~-~---L~~~s~vI-di~~~------------------- 452 (633)
..+|..|+-..+....+ -..|+|+||||.--- .+-.+. + .+-|+.+| |.+|.
T Consensus 389 a~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~D-iITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~ 467 (1674)
T KOG0951|consen 389 APLGITVLELTGDSQLGKEQIEETQVIVTTPEKWD-IITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRR 467 (1674)
T ss_pred cccCcEEEEecccccchhhhhhcceeEEeccchhh-hhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHHHHHHH
Confidence 23344454322222222 256999999999642 222221 2 22344444 33221
Q ss_pred ----CCCccEEEeeccc-CHHhHhhhhCCCC--EEEe--CCeeeeEEEEEEcCCchhHHHH--HHHHHH--HHHhcCCCC
Q 035699 453 ----RPDLKLLISSATL-DAENFSDYFGSAP--IFKI--PRRRYHVELFYTKAPEADYIEA--AIVTAL--QIHVNEPIG 519 (633)
Q Consensus 453 ----rpdlklil~SAT~-~~~~~s~~f~~~p--ii~i--~gr~~pv~~~y~~~~~~~yl~~--~v~~l~--~i~~~~~~g 519 (633)
....+++.+|||+ |.+....|+.-.+ +|.. .=|..|+++.|.-..+.+-+.. +.+.++ .++.....+
T Consensus 468 ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~ 547 (1674)
T KOG0951|consen 468 SESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKN 547 (1674)
T ss_pred hhhcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCC
Confidence 1246899999999 6666666654222 3333 2255677888876554443321 222222 123334458
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhc----------c---------------cCCC---CCceEEEeccCCCCHHHHHHHhC
Q 035699 520 DILVFLTGQDQFETAEEILKQRTR----------G---------------LGTK---IAELIICPIYGNLPTELQAKIFE 571 (633)
Q Consensus 520 ~iLVFl~t~~eie~l~~~L~~~~~----------~---------------l~~~---~~~~~v~~lHg~l~~~~R~~i~~ 571 (633)
++|||+.++++.-..++.++..+- . .+++ +-...+..+|+||....|..+..
T Consensus 548 qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~Ed 627 (1674)
T KOG0951|consen 548 QVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVED 627 (1674)
T ss_pred cEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHH
Confidence 999999999999999999984321 0 1111 12456888999999999999999
Q ss_pred CCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccccccCCCCce
Q 035699 572 PTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVKSYNPKTGME 617 (633)
Q Consensus 572 ~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~~yd~~~g~~ 617 (633)
-|..|.++|+++|-..+.|++.|+=+++|-. ..+|||..|.-
T Consensus 628 Lf~~g~iqvlvstatlawgvnlpahtViikg----tqvy~pekg~w 669 (1674)
T KOG0951|consen 628 LFADGHIQVLVSTATLAWGVNLPAHTVIIKG----TQVYDPEKGRW 669 (1674)
T ss_pred HHhcCceeEEEeehhhhhhcCCCcceEEecC----ccccCcccCcc
Confidence 9999999999999999999999976666632 45799998863
No 104
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.52 E-value=5.6e-13 Score=154.81 Aligned_cols=113 Identities=16% Similarity=0.113 Sum_probs=84.6
Q ss_pred ccCC--ChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccc
Q 035699 327 KTLP--IYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGH 404 (633)
Q Consensus 327 ~~LP--i~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~ 404 (633)
-.-| +.|++.++++.+..++.+|+.++||||||+++.+|++...+... .++|+.|+|+||.+++..+.. ++..+|.
T Consensus 87 ~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~-~v~IVTpTrELA~Qdae~m~~-L~k~lGL 164 (970)
T PRK12899 87 YHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGK-PVHLVTVNDYLAQRDCEWVGS-VLRWLGL 164 (970)
T ss_pred ccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcC-CeEEEeCCHHHHHHHHHHHHH-HHhhcCC
Confidence 3457 89999999999999999999999999999999888876554332 578889999999999875543 3333445
Q ss_pred eEeeeeeccccc----CCCCcEEEeCchHH-HHHHhcCC-CCC
Q 035699 405 EVGYSIRFEDCT----SDKTVLKYMTDGML-LREIVLEP-SLE 441 (633)
Q Consensus 405 ~VGy~ir~e~~~----s~~t~Iiv~TpGrL-L~~l~~~~-~L~ 441 (633)
.||..+.+.+.. .-+++|+|+|||+| ++++..+. .++
T Consensus 165 sV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~ 207 (970)
T PRK12899 165 TTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATR 207 (970)
T ss_pred eEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcC
Confidence 555444333221 23589999999999 99987663 444
No 105
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.46 E-value=1.1e-12 Score=153.71 Aligned_cols=259 Identities=18% Similarity=0.113 Sum_probs=146.0
Q ss_pred hHHHHHHHHHHHc---CC-eEEEeccCCChhhchHHHHHHHhccc---cCCeeeecchhHHHHHHHHHHHHHHhCCcc--
Q 035699 332 YPFREELLQAVSE---YP-VLVIVGETGSGKTTQIPQYLYEAGYT---KQGKIGCTQLRRVAAMSVAARVSQEMGVKL-- 402 (633)
Q Consensus 332 ~~~q~~il~al~~---~~-~vIi~a~TGSGKTt~lp~~Lle~~~~---~~gkilitqPrR~aA~qva~rva~e~g~~v-- 402 (633)
+++|..++..+.. .. .+++.||||+|||++...+.+..... ...+++.+.|.|.+..+++.++....+...
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~~ 276 (733)
T COG1203 197 YELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSVI 276 (733)
T ss_pred hHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccccc
Confidence 3444444444443 24 78999999999999877665543222 234999999999999999998876543221
Q ss_pred cc-eEeeee-----ec----------cccc-CCCCcEEEeCchHHHHHHhcCCCCC-----Cceeee-eecccC------
Q 035699 403 GH-EVGYSI-----RF----------EDCT-SDKTVLKYMTDGMLLREIVLEPSLE-----SYSVLI-DLINYR------ 453 (633)
Q Consensus 403 g~-~VGy~i-----r~----------e~~~-s~~t~Iiv~TpGrLL~~l~~~~~L~-----~~s~vI-di~~~r------ 453 (633)
+. ..|... -. .+.. ..-..++++||-..+......+... ..|.+| |..|..
T Consensus 277 ~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~~~ 356 (733)
T COG1203 277 GKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADETML 356 (733)
T ss_pred cccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccchH
Confidence 21 111100 00 0000 0112334444444443222211111 223444 433322
Q ss_pred ------------CCccEEEeecccCH---HhHhhhhCCCCEEEeCCeeeeEEEEE--EcCCchhHHHHHH-HHHHHH-Hh
Q 035699 454 ------------PDLKLLISSATLDA---ENFSDYFGSAPIFKIPRRRYHVELFY--TKAPEADYIEAAI-VTALQI-HV 514 (633)
Q Consensus 454 ------------pdlklil~SAT~~~---~~~s~~f~~~pii~i~gr~~pv~~~y--~~~~~~~yl~~~v-~~l~~i-~~ 514 (633)
-+..+|+||||++. +.|..++...-.+..+....|....+ ......+..+... .....+ ..
T Consensus 357 ~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (733)
T COG1203 357 AALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISEE 436 (733)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcchhh
Confidence 24589999999965 44555554333222211100000000 0000011111100 011111 11
Q ss_pred cCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCC----CCCCCeeEEEeCCccccC
Q 035699 515 NEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEP----TPEGARKVVLATNIAETS 590 (633)
Q Consensus 515 ~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~----f~~g~rkVLvATdIAerG 590 (633)
-...++++|-|||...+..+|+.|+... ..++.+||.+....|.+.... |..+...|+|||.|.|-|
T Consensus 437 ~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~---------~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEag 507 (733)
T COG1203 437 VKEGKKVLVIVNTVDRAIELYEKLKEKG---------PKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAG 507 (733)
T ss_pred hccCCcEEEEEecHHHHHHHHHHHHhcC---------CCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEE
Confidence 1335899999999999999999999852 279999999999999887663 245667899999999999
Q ss_pred CCCCCccEEE
Q 035699 591 LTIDGIKYVI 600 (633)
Q Consensus 591 LdIp~V~~VI 600 (633)
+||+ .+++|
T Consensus 508 vDid-fd~mI 516 (733)
T COG1203 508 VDID-FDVLI 516 (733)
T ss_pred eccc-cCeee
Confidence 9999 66666
No 106
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.45 E-value=5.8e-13 Score=131.39 Aligned_cols=136 Identities=18% Similarity=0.067 Sum_probs=99.1
Q ss_pred CChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhcccc----CCeeeecchhHHHHHHHHHHHHHHhCCcccce
Q 035699 330 PIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTK----QGKIGCTQLRRVAAMSVAARVSQEMGVKLGHE 405 (633)
Q Consensus 330 Pi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~----~gkilitqPrR~aA~qva~rva~e~g~~vg~~ 405 (633)
..+++|.++++.+.++++++++||||+|||..+..+++...... +++++|+.|++.++.|++..+..... ..+..
T Consensus 21 ~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~-~~~~~ 99 (203)
T cd00268 21 KPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGK-HTNLK 99 (203)
T ss_pred CCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhc-cCCce
Confidence 36889999999999999999999999999998777777665443 33899999999999999876654332 12222
Q ss_pred Eeeeeeccc------ccCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eeccc-----------------CCCccEEE
Q 035699 406 VGYSIRFED------CTSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLINY-----------------RPDLKLLI 460 (633)
Q Consensus 406 VGy~ir~e~------~~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~~~-----------------rpdlklil 460 (633)
++....... ....+++|+||||+.|++.+.+.. .+.+++++| |.+|. .+..++++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~~~~~~~ 179 (203)
T cd00268 100 VVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKDRQTLL 179 (203)
T ss_pred EEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHHHHhCCcccEEEE
Confidence 221111111 112367899999999999987765 678888888 44331 23678999
Q ss_pred eecccC
Q 035699 461 SSATLD 466 (633)
Q Consensus 461 ~SAT~~ 466 (633)
+|||+.
T Consensus 180 ~SAT~~ 185 (203)
T cd00268 180 FSATMP 185 (203)
T ss_pred EeccCC
Confidence 999995
No 107
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.42 E-value=7.5e-13 Score=155.98 Aligned_cols=266 Identities=14% Similarity=0.165 Sum_probs=172.2
Q ss_pred HHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccceEeeeee-
Q 035699 333 PFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIR- 411 (633)
Q Consensus 333 ~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~VGy~ir- 411 (633)
+-|.+++.++++|.+++|.-|||.||+..+.+|.+-. +|-.+|+.|-..|.......+ ...+++....-|-+..
T Consensus 267 ~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~----~gitvVISPL~SLm~DQv~~L-~~~~I~a~~L~s~q~~~ 341 (941)
T KOG0351|consen 267 PNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL----GGVTVVISPLISLMQDQVTHL-SKKGIPACFLSSIQTAA 341 (941)
T ss_pred hhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc----CCceEEeccHHHHHHHHHHhh-hhcCcceeeccccccHH
Confidence 3477778899999999999999999997644443211 225788999888876655444 2223222111111111
Q ss_pred -----cccccC--CCCcEEEeCchHHHHHHh---cCCCCCC---ceeee-eecc--------cC-------------CCc
Q 035699 412 -----FEDCTS--DKTVLKYMTDGMLLREIV---LEPSLES---YSVLI-DLIN--------YR-------------PDL 456 (633)
Q Consensus 412 -----~e~~~s--~~t~Iiv~TpGrLL~~l~---~~~~L~~---~s~vI-di~~--------~r-------------pdl 456 (633)
+..... +..+|+|.||.++...-. ....|.. +..+| |.+| || |..
T Consensus 342 ~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~v 421 (941)
T KOG0351|consen 342 ERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFPGV 421 (941)
T ss_pred HHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCCCC
Confidence 000112 357899999998864321 1113444 44444 4432 33 334
Q ss_pred cEEEeecccCH---HhHhhhh--CCCCEEEeCCeeeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHH
Q 035699 457 KLLISSATLDA---ENFSDYF--GSAPIFKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQF 531 (633)
Q Consensus 457 klil~SAT~~~---~~~s~~f--~~~pii~i~gr~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~ei 531 (633)
=+|.++||... +.+..-+ .+++++.-. . .+...+|-..+..+ ...+...+..+-..++.+.+||+|.++.+|
T Consensus 422 P~iALTATAT~~v~~DIi~~L~l~~~~~~~~s-f-nR~NL~yeV~~k~~-~~~~~~~~~~~~~~~~~~s~IIYC~sr~~c 498 (941)
T KOG0351|consen 422 PFIALTATATERVREDVIRSLGLRNPELFKSS-F-NRPNLKYEVSPKTD-KDALLDILEESKLRHPDQSGIIYCLSRKEC 498 (941)
T ss_pred CeEEeehhccHHHHHHHHHHhCCCCcceeccc-C-CCCCceEEEEeccC-ccchHHHHHHhhhcCCCCCeEEEeCCcchH
Confidence 57888999854 2333332 355544321 1 11223332222221 112223333344456678999999999999
Q ss_pred HHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCcccc-c
Q 035699 532 ETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVKS-Y 610 (633)
Q Consensus 532 e~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~~-y 610 (633)
+.+...|... ++....+|++|+..+|..+...|-.+..+||+||=....|||-|||..||.+++|+... |
T Consensus 499 e~vs~~L~~~---------~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~Y 569 (941)
T KOG0351|consen 499 EQVSAVLRSL---------GKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGY 569 (941)
T ss_pred HHHHHHHHHh---------chhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHH
Confidence 9999999885 68899999999999999999999999999999999999999999999999999999753 5
Q ss_pred cCCCC
Q 035699 611 NPKTG 615 (633)
Q Consensus 611 d~~~g 615 (633)
.-.+|
T Consensus 570 YQE~G 574 (941)
T KOG0351|consen 570 YQEAG 574 (941)
T ss_pred HHhcc
Confidence 54443
No 108
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.38 E-value=2.1e-11 Score=140.71 Aligned_cols=254 Identities=16% Similarity=0.135 Sum_probs=163.1
Q ss_pred CCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCccc---ce
Q 035699 329 LPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLG---HE 405 (633)
Q Consensus 329 LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg---~~ 405 (633)
.+.|..|.-=..-+..++..-|+||||.||||....+-+.. -.+++++.++.||..|+.|+++++.+.. ...| ..
T Consensus 81 ~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~-a~kgkr~yii~PT~~Lv~Q~~~kl~~~~-e~~~~~~~~ 158 (1187)
T COG1110 81 FRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYL-AKKGKRVYIIVPTTTLVRQVYERLKKFA-EDAGSLDVL 158 (1187)
T ss_pred CCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHH-HhcCCeEEEEecCHHHHHHHHHHHHHHH-hhcCCccee
Confidence 36666666666778888889999999999998755443322 1234599999999999999999986644 2222 11
Q ss_pred Eeeeeeccc---------ccCCCCcEEEeCchHHHHHHhcCCCCCCceeee-------------------------e---
Q 035699 406 VGYSIRFED---------CTSDKTVLKYMTDGMLLREIVLEPSLESYSVLI-------------------------D--- 448 (633)
Q Consensus 406 VGy~ir~e~---------~~s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-------------------------d--- 448 (633)
++|.-..-. ..+.+.+|+|+|.+.|...+..-.. -+|+.++ +
T Consensus 159 ~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~-~kFdfifVDDVDA~LkaskNvDriL~LlGf~eE~i~ 237 (1187)
T COG1110 159 VVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK-LKFDFIFVDDVDAILKASKNVDRLLRLLGFSEEVIE 237 (1187)
T ss_pred eeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc-cCCCEEEEccHHHHHhccccHHHHHHHcCCCHHHHH
Confidence 212111000 1134689999999999877643221 1344444 0
Q ss_pred -----------------------ec---------ccCCCccEEEeecccCH-----HhHhhhhCCCCEEEeCCeeeeEEE
Q 035699 449 -----------------------LI---------NYRPDLKLLISSATLDA-----ENFSDYFGSAPIFKIPRRRYHVEL 491 (633)
Q Consensus 449 -----------------------i~---------~~rpdlklil~SAT~~~-----~~~s~~f~~~pii~i~gr~~pv~~ 491 (633)
++ .....-.+|++|||..+ ..|...++=.+=-...+-+.-++.
T Consensus 238 ~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFevG~~~~~LRNIvD~ 317 (1187)
T COG1110 238 SAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFEVGSGGEGLRNIVDI 317 (1187)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCccCccchhhhheeee
Confidence 00 11122357788999954 445555431110011111122333
Q ss_pred EEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCc---HHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHH
Q 035699 492 FYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTG---QDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAK 568 (633)
Q Consensus 492 ~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t---~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~ 568 (633)
+... + ....+..+..... .-.|||+|. .+.++.+++.|+.. ++.+..+|+.- .+
T Consensus 318 y~~~-~-------~~e~~~elvk~lG-~GgLIfV~~d~G~e~aeel~e~Lr~~---------Gi~a~~~~a~~-----~~ 374 (1187)
T COG1110 318 YVES-E-------SLEKVVELVKKLG-DGGLIFVPIDYGREKAEELAEYLRSH---------GINAELIHAEK-----EE 374 (1187)
T ss_pred eccC-c-------cHHHHHHHHHHhC-CCeEEEEEcHHhHHHHHHHHHHHHhc---------CceEEEeeccc-----hh
Confidence 3333 2 1223333333332 357999999 89999999999885 89999999852 56
Q ss_pred HhCCCCCCCeeEEEe----CCccccCCCCC-CccEEEeCCCCccc
Q 035699 569 IFEPTPEGARKVVLA----TNIAETSLTID-GIKYVIDPGFAKVK 608 (633)
Q Consensus 569 i~~~f~~g~rkVLvA----TdIAerGLdIp-~V~~VID~G~~k~~ 608 (633)
.++.|..|...|||. ..++-||||.| -|.|+|=.|.|+..
T Consensus 375 ~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk~r 419 (1187)
T COG1110 375 ALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPKFR 419 (1187)
T ss_pred hhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCcee
Confidence 799999999999997 47899999999 57899999999754
No 109
>smart00311 PWI PWI, domain in splicing factors.
Probab=99.28 E-value=5.2e-12 Score=105.84 Aligned_cols=61 Identities=16% Similarity=0.499 Sum_probs=58.4
Q ss_pred hhhhHhhhhhhhhhcCchhHHHHHHHHHhhccCChHHHHHHhhhcCCCCCHhHHHHHHHHHhhC
Q 035699 6 NLKTWVSDKLISLLGYSQPAVVQYVIGLSKQALSSADLETKLQEFEFSSTTETRAFAQEIFARV 69 (633)
Q Consensus 6 ~l~~wvsD~l~~llG~sd~~~~~~~~~~a~~a~s~~~l~~~L~~~~~~~~~~~~~Fa~el~~r~ 69 (633)
.++.||+|+++++||++|++||+||+++++++++|++++..|..+|+. ++..||.+||+++
T Consensus 8 ~lk~WI~~kv~e~LG~~d~~vvd~i~~~l~~~~~~~~l~~~L~~~~f~---da~~Fv~~Lw~~l 68 (74)
T smart00311 8 EIKPWITKKVIEFLGFEEDTLVEFILSQIRQHKGPQAKLLQINLTGFE---DAEEFVDKLWRLL 68 (74)
T ss_pred HHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCChHHHHHHHHhhcch---hHHHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999987 4999999999986
No 110
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.25 E-value=3.2e-11 Score=127.89 Aligned_cols=254 Identities=14% Similarity=0.106 Sum_probs=156.4
Q ss_pred HHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHH------HhCCcccceE-e
Q 035699 335 REELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQ------EMGVKLGHEV-G 407 (633)
Q Consensus 335 q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~------e~g~~vg~~V-G 407 (633)
...+.-++..+++|.|+=|||+||++.+-+|.+-. +|-.+|+.|--.|.......+.. .++.++...- .
T Consensus 26 E~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~----~gITIV~SPLiALIkDQiDHL~~LKVp~~SLNSKlSt~ER~ 101 (641)
T KOG0352|consen 26 EQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH----GGITIVISPLIALIKDQIDHLKRLKVPCESLNSKLSTVERS 101 (641)
T ss_pred HHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh----CCeEEEehHHHHHHHHHHHHHHhcCCchhHhcchhhHHHHH
Confidence 34455566778999999999999998655543322 22457778876665443333321 1222211000 0
Q ss_pred eeeecccccCCCCcEEEeCchHHHHH----HhcC-CCCCCceeee-eecc--------cCCC-------------ccEEE
Q 035699 408 YSIRFEDCTSDKTVLKYMTDGMLLRE----IVLE-PSLESYSVLI-DLIN--------YRPD-------------LKLLI 460 (633)
Q Consensus 408 y~ir~e~~~s~~t~Iiv~TpGrLL~~----l~~~-~~L~~~s~vI-di~~--------~rpd-------------lklil 460 (633)
-.+.......+.+.|+|-||.+.-.- +++. ..-.-+++++ |.+| |||| .--+.
T Consensus 102 ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvA 181 (641)
T KOG0352|consen 102 RIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVA 181 (641)
T ss_pred HHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhhCCCCceEE
Confidence 00001112245678999999985422 1111 1234456666 4443 4444 34567
Q ss_pred eecccCHHhHhhhhCCCCEEEeCCeeeeEEEEEEcCCchh---------HHHHHHHHHHHHHh-----------cCC--C
Q 035699 461 SSATLDAENFSDYFGSAPIFKIPRRRYHVELFYTKAPEAD---------YIEAAIVTALQIHV-----------NEP--I 518 (633)
Q Consensus 461 ~SAT~~~~~~s~~f~~~pii~i~gr~~pv~~~y~~~~~~~---------yl~~~v~~l~~i~~-----------~~~--~ 518 (633)
++||.+++.-...|..- .-..||.++.+|....| .+...+..+..+.. +.. .
T Consensus 182 LTATA~~~VqEDi~~qL------~L~~PVAiFkTP~FR~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~ 255 (641)
T KOG0352|consen 182 LTATANAKVQEDIAFQL------KLRNPVAIFKTPTFRDNLFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFT 255 (641)
T ss_pred eecccChhHHHHHHHHH------hhcCcHHhccCcchhhhhhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcC
Confidence 88888664333222100 00134445544443322 22223333332221 111 2
Q ss_pred CCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccE
Q 035699 519 GDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKY 598 (633)
Q Consensus 519 g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~ 598 (633)
|.-||||.|++.||.++-.|... ++....+|++|...+|..+.+..=+|...||+||+-...|+|-|+|.+
T Consensus 256 GCGIVYCRTR~~cEq~AI~l~~~---------Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRF 326 (641)
T KOG0352|consen 256 GCGIVYCRTRNECEQVAIMLEIA---------GIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRF 326 (641)
T ss_pred cceEEEeccHHHHHHHHHHhhhc---------CcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeE
Confidence 77899999999999999888764 889999999999999999999988999999999999999999999999
Q ss_pred EEeCCCCcc
Q 035699 599 VIDPGFAKV 607 (633)
Q Consensus 599 VID~G~~k~ 607 (633)
||+-..++.
T Consensus 327 ViHW~~~qn 335 (641)
T KOG0352|consen 327 VIHWSPSQN 335 (641)
T ss_pred EEecCchhh
Confidence 998777654
No 111
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.20 E-value=2e-10 Score=132.02 Aligned_cols=278 Identities=16% Similarity=0.235 Sum_probs=165.7
Q ss_pred HccCCChHHHHHHH--HHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCccc
Q 035699 326 RKTLPIYPFREELL--QAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLG 403 (633)
Q Consensus 326 r~~LPi~~~q~~il--~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg 403 (633)
...+-+|.||.+.+ +.+.++.++|...||+.|||++.-+.++...+.....++...|--..+..-...+.. +.+.+|
T Consensus 219 kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~-~~~~~G 297 (1008)
T KOG0950|consen 219 KGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSP-FSIDLG 297 (1008)
T ss_pred hhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhh-hccccC
Confidence 34455667776654 456789999999999999998765555544343333444444443333222221211 223333
Q ss_pred ceE-eeeeeccccc-CCCCcEEEeCchHH---HHHHhcCCCCCCceeee-eecc----------------------cCCC
Q 035699 404 HEV-GYSIRFEDCT-SDKTVLKYMTDGML---LREIVLEPSLESYSVLI-DLIN----------------------YRPD 455 (633)
Q Consensus 404 ~~V-Gy~ir~e~~~-s~~t~Iiv~TpGrL---L~~l~~~~~L~~~s~vI-di~~----------------------~rpd 455 (633)
..| +|.=++.... .....+-|||-.+- .+.+.....+..+..|| |.+| ....
T Consensus 298 ~~ve~y~g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~~~ 377 (1008)
T KOG0950|consen 298 FPVEEYAGRFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLETS 377 (1008)
T ss_pred CcchhhcccCCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhccccc
Confidence 322 3331111111 23467899997764 44445555777788777 3332 1223
Q ss_pred ccEEEeeccc-CHHhHhhhhCCCCEEEeCCeeeeEEEEEEcCC---c--hhHHHHHHH-------------HHHHHH-hc
Q 035699 456 LKLLISSATL-DAENFSDYFGSAPIFKIPRRRYHVELFYTKAP---E--ADYIEAAIV-------------TALQIH-VN 515 (633)
Q Consensus 456 lklil~SAT~-~~~~~s~~f~~~pii~i~gr~~pv~~~y~~~~---~--~~yl~~~v~-------------~l~~i~-~~ 515 (633)
+++|.||||+ |...+..||+ +-+....-|..|...+..+.+ . ...+..-+. .++.+. .+
T Consensus 378 ~~iIGMSATi~N~~lL~~~L~-A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet 456 (1008)
T KOG0950|consen 378 VQIIGMSATIPNNSLLQDWLD-AFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDEDPDHLVGLCTET 456 (1008)
T ss_pred eeEeeeecccCChHHHHHHhh-hhheecccCcccchhccCCCcccccchhhHHHHHhhhhhhhhcccCCCcceeeehhhh
Confidence 6899999999 8888888886 333322222222222211111 0 000000000 001111 11
Q ss_pred CCCC-CEEEEcCcHHHHHHHHHHHHHhhcc-------cC---------------C-------CCCceEEEeccCCCCHHH
Q 035699 516 EPIG-DILVFLTGQDQFETAEEILKQRTRG-------LG---------------T-------KIAELIICPIYGNLPTEL 565 (633)
Q Consensus 516 ~~~g-~iLVFl~t~~eie~l~~~L~~~~~~-------l~---------------~-------~~~~~~v~~lHg~l~~~~ 565 (633)
.+.| .+|||||++..|+.++..+...... ++ . +.-..-+..+|++++.++
T Consensus 457 ~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eE 536 (1008)
T KOG0950|consen 457 APEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEE 536 (1008)
T ss_pred hhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccch
Confidence 2234 4999999999999999777543321 00 0 112345788999999999
Q ss_pred HHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCC
Q 035699 566 QAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFA 605 (633)
Q Consensus 566 R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~ 605 (633)
|..+...|+.|...||+||+.++.|++.|...++|-+-++
T Consensus 537 R~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~ 576 (1008)
T KOG0950|consen 537 REIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYV 576 (1008)
T ss_pred HHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCcc
Confidence 9999999999999999999999999999999999976554
No 112
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.17 E-value=1.5e-09 Score=129.63 Aligned_cols=101 Identities=15% Similarity=0.197 Sum_probs=74.1
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCe
Q 035699 499 ADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGAR 578 (633)
Q Consensus 499 ~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~r 578 (633)
..|..+....+..+.... +|.+|||+|+...++.++..|...... .++.+.. .+.. ..|..+++.|..|..
T Consensus 656 ~~~~~~ia~~i~~l~~~~-~g~~LVlftS~~~l~~v~~~L~~~~~~-----~~~~~l~--q~~~-~~r~~ll~~F~~~~~ 726 (850)
T TIGR01407 656 EEYAQEIASYIIEITAIT-SPKILVLFTSYEMLHMVYDMLNELPEF-----EGYEVLA--QGIN-GSRAKIKKRFNNGEK 726 (850)
T ss_pred HHHHHHHHHHHHHHHHhc-CCCEEEEeCCHHHHHHHHHHHhhhccc-----cCceEEe--cCCC-ccHHHHHHHHHhCCC
Confidence 456666666666665544 589999999999999999999763210 1333332 2222 467788899999999
Q ss_pred eEEEeCCccccCCCCCCcc--EEEeCCCCccc
Q 035699 579 KVVLATNIAETSLTIDGIK--YVIDPGFAKVK 608 (633)
Q Consensus 579 kVLvATdIAerGLdIp~V~--~VID~G~~k~~ 608 (633)
.|||||+.+..|||+||.. +||=+|+|..+
T Consensus 727 ~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~ 758 (850)
T TIGR01407 727 AILLGTSSFWEGVDFPGNGLVCLVIPRLPFAN 758 (850)
T ss_pred eEEEEcceeecccccCCCceEEEEEeCCCCCC
Confidence 9999999999999999776 55558888754
No 113
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.13 E-value=1.1e-09 Score=104.95 Aligned_cols=147 Identities=22% Similarity=0.168 Sum_probs=102.8
Q ss_pred cCCChHHHHHHHHHHHcC-CeEEEeccCCChhhchHHHHHHHhcccc-CCeeeecchhHHHHHHHHHHHHHHhCCcccce
Q 035699 328 TLPIYPFREELLQAVSEY-PVLVIVGETGSGKTTQIPQYLYEAGYTK-QGKIGCTQLRRVAAMSVAARVSQEMGVKLGHE 405 (633)
Q Consensus 328 ~LPi~~~q~~il~al~~~-~~vIi~a~TGSGKTt~lp~~Lle~~~~~-~gkilitqPrR~aA~qva~rva~e~g~~vg~~ 405 (633)
..+..++|.+++..+.+. +.+++.|+||||||+.+..++.+..... ..+++++.|++.++.+...++...+....+..
T Consensus 6 ~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~ 85 (201)
T smart00487 6 FEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKV 85 (201)
T ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEE
Confidence 456788999999999988 8999999999999998888877764432 24899999999999999888877664321111
Q ss_pred Eeeeeeccc------ccCCC-CcEEEeCchHHHHHHhcCC-CCCCceeee-eeccc-----------------CCCccEE
Q 035699 406 VGYSIRFED------CTSDK-TVLKYMTDGMLLREIVLEP-SLESYSVLI-DLINY-----------------RPDLKLL 459 (633)
Q Consensus 406 VGy~ir~e~------~~s~~-t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~~~-----------------rpdlkli 459 (633)
+.+ ..... ..... ..|+++|++.+.+.+.... ....+.++| |.++. .+..+++
T Consensus 86 ~~~-~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v 164 (201)
T smart00487 86 VGL-YGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLL 164 (201)
T ss_pred EEE-eCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEE
Confidence 111 11111 01223 3899999999999987765 666777777 44332 1356899
Q ss_pred Eeeccc--CHHhHhhhhC
Q 035699 460 ISSATL--DAENFSDYFG 475 (633)
Q Consensus 460 l~SAT~--~~~~~s~~f~ 475 (633)
++|||+ +...+...+.
T Consensus 165 ~~saT~~~~~~~~~~~~~ 182 (201)
T smart00487 165 LLSATPPEEIENLLELFL 182 (201)
T ss_pred EEecCCchhHHHHHHHhc
Confidence 999999 4455544433
No 114
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.12 E-value=9.5e-10 Score=115.15 Aligned_cols=257 Identities=17% Similarity=0.178 Sum_probs=161.0
Q ss_pred hHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccceEeeee-
Q 035699 332 YPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSI- 410 (633)
Q Consensus 332 ~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~VGy~i- 410 (633)
.|.|.+.+.+...+.+++++-|||-||++..-+|.+- .+|-.+|++|--.|.....-.+ ..+|......-..+.
T Consensus 96 rplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~----adg~alvi~plislmedqil~l-kqlgi~as~lnanssk 170 (695)
T KOG0353|consen 96 RPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALC----ADGFALVICPLISLMEDQILQL-KQLGIDASMLNANSSK 170 (695)
T ss_pred ChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHh----cCCceEeechhHHHHHHHHHHH-HHhCcchhhccCcccH
Confidence 3568888999999999999999999999866555442 2456788888766654433322 233433211100000
Q ss_pred ----eccc-cc--CCCCcEEEeCchHHHHH--HhcC---C-CCCCceeee-eecc--------cC-------------CC
Q 035699 411 ----RFED-CT--SDKTVLKYMTDGMLLRE--IVLE---P-SLESYSVLI-DLIN--------YR-------------PD 455 (633)
Q Consensus 411 ----r~e~-~~--s~~t~Iiv~TpGrLL~~--l~~~---~-~L~~~s~vI-di~~--------~r-------------pd 455 (633)
+.+. .+ ...-.++|.||..+... |++. . ....+..+- |..| +| |.
T Consensus 171 e~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~ 250 (695)
T KOG0353|consen 171 EEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKG 250 (695)
T ss_pred HHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCC
Confidence 0111 11 23457999999987532 2221 1 122222222 2211 23 44
Q ss_pred ccEEEeecccCHHhHh---hhhC--CCCEEE----eCCeeeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCC-CCEEEEc
Q 035699 456 LKLLISSATLDAENFS---DYFG--SAPIFK----IPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPI-GDILVFL 525 (633)
Q Consensus 456 lklil~SAT~~~~~~s---~~f~--~~pii~----i~gr~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~-g~iLVFl 525 (633)
.-+|.++||.....+. +.+. .+-.|. -|.-.| ++..-|..+.++++. +..++...-. ..-||||
T Consensus 251 ~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~y--ev~qkp~n~dd~~ed----i~k~i~~~f~gqsgiiyc 324 (695)
T KOG0353|consen 251 APIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKY--EVRQKPGNEDDCIED----IAKLIKGDFAGQSGIIYC 324 (695)
T ss_pred CceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCcee--EeeeCCCChHHHHHH----HHHHhccccCCCcceEEE
Confidence 5688888886322211 1111 111111 111111 222334445555544 3333332222 3469999
Q ss_pred CcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCC
Q 035699 526 TGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFA 605 (633)
Q Consensus 526 ~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~ 605 (633)
-++.+++.++..|+.+ ++....+|++|.++.+..+-+..-.|...|||||=....|||-|+|.+||+-.+|
T Consensus 325 ~sq~d~ekva~alkn~---------gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ 395 (695)
T KOG0353|consen 325 FSQKDCEKVAKALKNH---------GIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLP 395 (695)
T ss_pred eccccHHHHHHHHHhc---------CccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccc
Confidence 9999999999999885 8889999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 035699 606 KVK 608 (633)
Q Consensus 606 k~~ 608 (633)
+..
T Consensus 396 ksi 398 (695)
T KOG0353|consen 396 KSI 398 (695)
T ss_pred hhH
Confidence 863
No 115
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.09 E-value=9.9e-10 Score=99.09 Aligned_cols=117 Identities=32% Similarity=0.313 Sum_probs=83.7
Q ss_pred eEEEeccCCChhhchHHHHHHHhccc-cCCeeeecchhHHHHHHHHHHHHHHhCCcccceEeeeeeccccc------CCC
Q 035699 347 VLVIVGETGSGKTTQIPQYLYEAGYT-KQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCT------SDK 419 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~Lle~~~~-~~gkilitqPrR~aA~qva~rva~e~g~~vg~~VGy~ir~e~~~------s~~ 419 (633)
++++.|+||||||++++.++...... ..+++++++|++.++.+....+...... +..+.+......+. ...
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 79 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLLSGK 79 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHhcCC
Confidence 58899999999999988877765433 3348999999999999998888776643 33344444444333 357
Q ss_pred CcEEEeCchHHHHHHhcCC-CCCCceeee-eecc-----------------cCCCccEEEeeccc
Q 035699 420 TVLKYMTDGMLLREIVLEP-SLESYSVLI-DLIN-----------------YRPDLKLLISSATL 465 (633)
Q Consensus 420 t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~~-----------------~rpdlklil~SAT~ 465 (633)
.+|+++|++.+.+.+.... ....+.++| |.+| ..+..+++++|||+
T Consensus 80 ~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 80 TDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 8999999999998887654 455677777 3332 23345788888885
No 116
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.08 E-value=8.6e-09 Score=120.02 Aligned_cols=248 Identities=13% Similarity=0.011 Sum_probs=138.4
Q ss_pred CCeEEEeccCCChhhchHHHHHHHh-ccccCCeeeecchhHHHHHHHHHHHHHHhCCcccceEeeeeecc-c-ccCCCCc
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLYEA-GYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFE-D-CTSDKTV 421 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Lle~-~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~VGy~ir~e-~-~~s~~t~ 421 (633)
++..+|+.+||||||......+... ......+|+++.||..|..|....+.......+. .++ ++... . .......
T Consensus 263 ~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~~~~~-~~~-s~~~L~~~l~~~~~~ 340 (667)
T TIGR00348 263 ERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQKDCAE-RIE-SIAELKRLLEKDDGG 340 (667)
T ss_pred CceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCCCCCc-ccC-CHHHHHHHHhCCCCC
Confidence 3568899999999996544332221 1123348999999999999998877654321110 011 11100 0 1123467
Q ss_pred EEEeCchHHHHHHhcC--C-CC--CCceeeeeeccc-------------CCCccEEEeecccCH----HhHhhhh--CCC
Q 035699 422 LKYMTDGMLLREIVLE--P-SL--ESYSVLIDLINY-------------RPDLKLLISSATLDA----ENFSDYF--GSA 477 (633)
Q Consensus 422 Iiv~TpGrLL~~l~~~--~-~L--~~~s~vIdi~~~-------------rpdlklil~SAT~~~----~~~s~~f--~~~ 477 (633)
|+|+|...|.+.+... + .. .++=+|||.+|. .|+...++||||+-. ..+..|. .+.
T Consensus 341 iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~~~l~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~ 420 (667)
T TIGR00348 341 IIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELAKNLKKALKNASFFGFTGTPIFKKDRDTSLTFAYVFGR 420 (667)
T ss_pred EEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHHHHHHhhCCCCcEEEEeCCCcccccccccccccCCCCC
Confidence 9999999998644321 1 11 122234466653 466789999999931 2222221 123
Q ss_pred CEEEe-------CCeeeeEEEEEEcCCchh-------------H--------------------------------HHHH
Q 035699 478 PIFKI-------PRRRYHVELFYTKAPEAD-------------Y--------------------------------IEAA 505 (633)
Q Consensus 478 pii~i-------~gr~~pv~~~y~~~~~~~-------------y--------------------------------l~~~ 505 (633)
++... .| +.+.+.|....... + +...
T Consensus 421 ~i~~Y~~~~AI~dG--~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i 498 (667)
T TIGR00348 421 YLHRYFITDAIRDG--LTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESI 498 (667)
T ss_pred eEEEeeHHHHhhcC--CeeeEEEEecchhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHH
Confidence 33322 23 33333443221100 0 0000
Q ss_pred HHHHHHHH---hcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHH------------------
Q 035699 506 IVTALQIH---VNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTE------------------ 564 (633)
Q Consensus 506 v~~l~~i~---~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~------------------ 564 (633)
...++..+ .....++.+|||.++..|..+++.|.+..... .+...+.++++....
T Consensus 499 a~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~----~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~ 574 (667)
T TIGR00348 499 AKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEK----FEASAIVMTGKESDDAEIRDYNKHIRTKFDKSD 574 (667)
T ss_pred HHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccc----cCCeeEEecCCccchhHHHHHHHHhccccccch
Confidence 11111111 11124899999999999999999987753221 023444555543222
Q ss_pred ---HHHHHhCCCCC-CCeeEEEeCCccccCCCCCCccEEE
Q 035699 565 ---LQAKIFEPTPE-GARKVVLATNIAETSLTIDGIKYVI 600 (633)
Q Consensus 565 ---~R~~i~~~f~~-g~rkVLvATdIAerGLdIp~V~~VI 600 (633)
....+...|.. +..+|||.+|.+-+|+|.|.+++++
T Consensus 575 ~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLy 614 (667)
T TIGR00348 575 GFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLY 614 (667)
T ss_pred hhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEE
Confidence 11245556654 6789999999999999999988766
No 117
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.03 E-value=2.6e-09 Score=123.44 Aligned_cols=256 Identities=16% Similarity=0.188 Sum_probs=153.7
Q ss_pred CCChHHHHHHHHHHHcC----CeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccc
Q 035699 329 LPIYPFREELLQAVSEY----PVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGH 404 (633)
Q Consensus 329 LPi~~~q~~il~al~~~----~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~ 404 (633)
+...+.|..++..|.+. ...++.|.||||||..+.+.+... +.+++.++++.|--.+.-|+..|+...+|.+++.
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~-L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~v 275 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKV-LAQGKQVLVLVPEIALTPQLLARFKARFGAKVAV 275 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHH-HHcCCEEEEEeccccchHHHHHHHHHHhCCChhh
Confidence 34444455555555544 778999999999999888887765 4455699999999999999999999999977643
Q ss_pred eEe-ee--eeccc---ccCCCCcEEEeCchHHHHHHhcCCCCCCceeee--------------------eecccC---CC
Q 035699 405 EVG-YS--IRFED---CTSDKTVLKYMTDGMLLREIVLEPSLESYSVLI--------------------DLINYR---PD 455 (633)
Q Consensus 405 ~VG-y~--ir~e~---~~s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI--------------------di~~~r---pd 455 (633)
-.+ .+ -+.+. -.+....|+|||==-|+- -+.++..|| |++-.| -+
T Consensus 276 lHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~------Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~ 349 (730)
T COG1198 276 LHSGLSPGERYRVWRRARRGEARVVIGTRSALFL------PFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKEN 349 (730)
T ss_pred hcccCChHHHHHHHHHHhcCCceEEEEechhhcC------chhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhC
Confidence 211 11 11111 113557899998655542 367788888 222221 24
Q ss_pred ccEEEeecccCHHhHhhhhCC-CCEEEeCCeee---eEEEEEEcCC----chh--HHHHHHHHHHHHHhcCCCCCEEEEc
Q 035699 456 LKLLISSATLDAENFSDYFGS-APIFKIPRRRY---HVELFYTKAP----EAD--YIEAAIVTALQIHVNEPIGDILVFL 525 (633)
Q Consensus 456 lklil~SAT~~~~~~s~~f~~-~pii~i~gr~~---pv~~~y~~~~----~~~--yl~~~v~~l~~i~~~~~~g~iLVFl 525 (633)
..+||-|||...+.+.....+ --.+.+..|.. +..+...... ..+ +-..++..+-+-+ ....++|+|+
T Consensus 350 ~pvvLgSATPSLES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l--~~geQ~llfl 427 (730)
T COG1198 350 APVVLGSATPSLESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTL--ERGEQVLLFL 427 (730)
T ss_pred CCEEEecCCCCHHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHH--hcCCeEEEEE
Confidence 679999999988877765332 11222222211 1111111100 000 0011111110000 0011222222
Q ss_pred CcH------------------------------------------------------------HHHHHHHHHHHHhhccc
Q 035699 526 TGQ------------------------------------------------------------DQFETAEEILKQRTRGL 545 (633)
Q Consensus 526 ~t~------------------------------------------------------------~eie~l~~~L~~~~~~l 545 (633)
|.+ -.++.+.+.|...+
T Consensus 428 nRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~F--- 504 (730)
T COG1198 428 NRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLF--- 504 (730)
T ss_pred ccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHC---
Confidence 222 12455556666654
Q ss_pred CCCCCceEEEeccCCCCHHH--HHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEE
Q 035699 546 GTKIAELIICPIYGNLPTEL--QAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVI 600 (633)
Q Consensus 546 ~~~~~~~~v~~lHg~l~~~~--R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VI 600 (633)
|+..++.+-++.+... -..++..|.+|+..|||-|.+.+-|.++|+|+.|.
T Consensus 505 ----P~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVg 557 (730)
T COG1198 505 ----PGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVG 557 (730)
T ss_pred ----CCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEE
Confidence 6788888888765543 34678899999999999999999999999999774
No 118
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=98.94 E-value=5.7e-09 Score=94.60 Aligned_cols=82 Identities=17% Similarity=0.356 Sum_probs=75.2
Q ss_pred CCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCc
Q 035699 517 PIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGI 596 (633)
Q Consensus 517 ~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V 596 (633)
..+++|||+++...++.+++.|.. ....+.++||+++...+..++..|..|..+||++|++++.|+|+|++
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~ 97 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRK---------PGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNV 97 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHh---------cCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhC
Confidence 468999999999999999999987 26789999999999999999999999999999999999999999999
Q ss_pred cEEEeCCCCcc
Q 035699 597 KYVIDPGFAKV 607 (633)
Q Consensus 597 ~~VID~G~~k~ 607 (633)
++||-.+.+..
T Consensus 98 ~~vi~~~~~~~ 108 (131)
T cd00079 98 SVVINYDLPWS 108 (131)
T ss_pred CEEEEeCCCCC
Confidence 99998777543
No 119
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.93 E-value=1.9e-08 Score=115.07 Aligned_cols=137 Identities=19% Similarity=0.134 Sum_probs=89.8
Q ss_pred cEEEeeccc--CHHhHhhhhCCCCEEEeCCeeeeEEEE----EEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHH
Q 035699 457 KLLISSATL--DAENFSDYFGSAPIFKIPRRRYHVELF----YTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQ 530 (633)
Q Consensus 457 klil~SAT~--~~~~~s~~f~~~pii~i~gr~~pv~~~----y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~e 530 (633)
++-.|+.|. ..+.|.+.+ +-+++.||.. .|+.-. ........++.+.+..+...|.. .-+|||.+.+.+.
T Consensus 364 kLsGMTGTa~t~~~Ef~~iY-~l~Vv~IPtn-kp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~--GrPVLVgt~sI~~ 439 (764)
T PRK12326 364 TVCGMTGTAVAAGEQLRQFY-DLGVSVIPPN-KPNIREDEADRVYATAAEKNDAIVEHIAEVHET--GQPVLVGTHDVAE 439 (764)
T ss_pred hheeecCCChhHHHHHHHHh-CCcEEECCCC-CCceeecCCCceEeCHHHHHHHHHHHHHHHHHc--CCCEEEEeCCHHH
Confidence 556777776 334555544 3456666643 122111 01112355667777777777754 3689999999999
Q ss_pred HHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCC---------------C
Q 035699 531 FETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTID---------------G 595 (633)
Q Consensus 531 ie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp---------------~ 595 (633)
.+.+...|.+. +++...|++.-...+-..|-+...+|. |-||||.|.||-||. |
T Consensus 440 SE~ls~~L~~~---------gI~h~vLNAk~~~~EA~IIa~AG~~ga--VTIATNMAGRGTDIkLg~~~~~~~~~V~~~G 508 (764)
T PRK12326 440 SEELAERLRAA---------GVPAVVLNAKNDAEEARIIAEAGKYGA--VTVSTQMAGRGTDIRLGGSDEADRDRVAELG 508 (764)
T ss_pred HHHHHHHHHhC---------CCcceeeccCchHhHHHHHHhcCCCCc--EEEEecCCCCccCeecCCCcccchHHHHHcC
Confidence 99999999885 677777887754444344455666664 889999999999996 2
Q ss_pred ccEEEeCCCCccc
Q 035699 596 IKYVIDPGFAKVK 608 (633)
Q Consensus 596 V~~VID~G~~k~~ 608 (633)
==|||=+..+...
T Consensus 509 GLhVIgTerheSr 521 (764)
T PRK12326 509 GLHVIGTGRHRSE 521 (764)
T ss_pred CcEEEeccCCchH
Confidence 2377766665543
No 120
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.88 E-value=2.7e-10 Score=129.37 Aligned_cols=303 Identities=9% Similarity=-0.140 Sum_probs=226.5
Q ss_pred HccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCC----eeeecchhHHHHHHHHHHHHHHhCCc
Q 035699 326 RKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQG----KIGCTQLRRVAAMSVAARVSQEMGVK 401 (633)
Q Consensus 326 r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~g----kilitqPrR~aA~qva~rva~e~g~~ 401 (633)
+-.+|+.++-+.||+++..+.++++.+.||||||++.|+.+++.-....+ .++.++||++.|...+.+++-+.++.
T Consensus 402 tgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~prpyg~i~fctvg 481 (1282)
T KOG0921|consen 402 TGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRPYGSIMFCTVG 481 (1282)
T ss_pred ccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccccccccccccccceeeeccc
Confidence 44689999999999999999999999999999999999999987554433 68899999999999998888888888
Q ss_pred ccceEeeeeeccccc-CCCCcEEEeCchHHHHHHhcCCCCCCceeeeeecc------------cCCCccEEEeecccCHH
Q 035699 402 LGHEVGYSIRFEDCT-SDKTVLKYMTDGMLLREIVLEPSLESYSVLIDLIN------------YRPDLKLLISSATLDAE 468 (633)
Q Consensus 402 vg~~VGy~ir~e~~~-s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vIdi~~------------~rpdlklil~SAT~~~~ 468 (633)
++...+|+.+++... .....+-.+|.|-++..++.+- .+.|..++++++ ++.=.++.++++|++..
T Consensus 482 vllr~~e~glrg~sh~i~deiherdv~~dfll~~lr~m-~~ty~dl~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq 560 (1282)
T KOG0921|consen 482 VLLRMMENGLRGISHVIIDEIHERDVDTDFVLIVLREM-ISTYRDLRVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQ 560 (1282)
T ss_pred hhhhhhhhcccccccccchhhhhhccchHHHHHHHHhh-hccchhhhhhhhhcccchhhhhhhhccccceeeccccccHH
Confidence 877778877766543 3445567899999998887543 122222221111 11223568999999999
Q ss_pred hHhhhhCCCCEEEeCCeeeeEEEEEE--------------------c-----------C-----CchhHHHHHHHHH---
Q 035699 469 NFSDYFGSAPIFKIPRRRYHVELFYT--------------------K-----------A-----PEADYIEAAIVTA--- 509 (633)
Q Consensus 469 ~~s~~f~~~pii~i~gr~~pv~~~y~--------------------~-----------~-----~~~~yl~~~v~~l--- 509 (633)
.|..++-.+++..+|++.++++.++. + . .....+++.+..+
T Consensus 561 ~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~ 640 (1282)
T KOG0921|consen 561 SFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASR 640 (1282)
T ss_pred HHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhccc
Confidence 99988889999999988776543210 0 0 0123333332222
Q ss_pred --H-HHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCc
Q 035699 510 --L-QIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNI 586 (633)
Q Consensus 510 --~-~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdI 586 (633)
. .|+.-.+++..|+||+++--+..+...+.+.- -|+ .....+.+.|..++......+++..+.+.+++...|++
T Consensus 641 ~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~-ilp--~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTid 717 (1282)
T KOG0921|consen 641 NIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYE-ILP--LHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITID 717 (1282)
T ss_pred CCccceeeecCchHHhhhhhhhhhhhhhhccchhcc-ccc--chhhcccHhhhhccCcccccccccccccceeeEeeeec
Confidence 1 22333577899999999998888887776531 111 13456888999999999999999999999999999999
Q ss_pred cccCCCCCCccEEEeCCCCccccccCCCCceeeeeeeccHHHHhhc
Q 035699 587 AETSLTIDGIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQR 632 (633)
Q Consensus 587 AerGLdIp~V~~VID~G~~k~~~yd~~~g~~~l~~~~iSka~a~QR 632 (633)
+++.+.+..+.+|++++--+...+-...-|+...+.|-+.-.-.||
T Consensus 718 d~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR 763 (1282)
T KOG0921|consen 718 DVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVR 763 (1282)
T ss_pred ceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceec
Confidence 9999999999999999888877777777888888887766655555
No 121
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=98.87 E-value=3.6e-08 Score=108.16 Aligned_cols=231 Identities=23% Similarity=0.221 Sum_probs=138.7
Q ss_pred CeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccceEeeeeecccccCCCCcEEEe
Q 035699 346 PVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYM 425 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~VGy~ir~e~~~s~~t~Iiv~ 425 (633)
++++-+|||.||||.-.++-+.+.. .-++.-|-|.||..|+.|+ ...|++.....|--.++.--....+..+-|
T Consensus 192 kIi~H~GPTNSGKTy~ALqrl~~ak-----sGvycGPLrLLA~EV~~r~-na~gipCdL~TGeE~~~~~~~~~~a~hvSc 265 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYRALQRLKSAK-----SGVYCGPLRLLAHEVYDRL-NALGIPCDLLTGEERRFVLDNGNPAQHVSC 265 (700)
T ss_pred eEEEEeCCCCCchhHHHHHHHhhhc-----cceecchHHHHHHHHHHHh-hhcCCCccccccceeeecCCCCCcccceEE
Confidence 4577799999999988887776542 4577889999999999988 456766655556444433322334566677
Q ss_pred CchHHHHHHhcCCCCCCceeee-eecccCCCccEEEeeccc-----CHHhHhhhhCCCCE-------EEeCCeeeeEEEE
Q 035699 426 TDGMLLREIVLEPSLESYSVLI-DLINYRPDLKLLISSATL-----DAENFSDYFGSAPI-------FKIPRRRYHVELF 492 (633)
Q Consensus 426 TpGrLL~~l~~~~~L~~~s~vI-di~~~rpdlklil~SAT~-----~~~~~s~~f~~~pi-------i~i~gr~~pv~~~ 492 (633)
|-.|+- --..|.+.| |.+....|..- ..-.|- -++.+ ...+.+.+ ....|-.+.|..|
T Consensus 266 TVEM~s-------v~~~yeVAViDEIQmm~Dp~R-GwAWTrALLGl~AdEi-HLCGepsvldlV~~i~k~TGd~vev~~Y 336 (700)
T KOG0953|consen 266 TVEMVS-------VNTPYEVAVIDEIQMMRDPSR-GWAWTRALLGLAADEI-HLCGEPSVLDLVRKILKMTGDDVEVREY 336 (700)
T ss_pred EEEEee-------cCCceEEEEehhHHhhcCccc-chHHHHHHHhhhhhhh-hccCCchHHHHHHHHHhhcCCeeEEEee
Confidence 776653 122344444 33322111100 000110 00000 00011111 1112333333333
Q ss_pred EEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCC
Q 035699 493 YTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEP 572 (633)
Q Consensus 493 y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~ 572 (633)
-...|.. + ...++.-+.+..+|+|+|-+ ++.+|-.+...+.+. .+..++.|||.||++.|..--..
T Consensus 337 eRl~pL~--v---~~~~~~sl~nlk~GDCvV~F-Skk~I~~~k~kIE~~--------g~~k~aVIYGsLPPeTr~aQA~~ 402 (700)
T KOG0953|consen 337 ERLSPLV--V---EETALGSLSNLKPGDCVVAF-SKKDIFTVKKKIEKA--------GNHKCAVIYGSLPPETRLAQAAL 402 (700)
T ss_pred cccCcce--e---hhhhhhhhccCCCCCeEEEe-ehhhHHHHHHHHHHh--------cCcceEEEecCCCCchhHHHHHH
Confidence 2222210 0 11344555666789999877 567788888888886 25669999999999876644443
Q ss_pred C--CCCCeeEEEeCCccccCCCCCCccEEEeCCCCc
Q 035699 573 T--PEGARKVVLATNIAETSLTIDGIKYVIDPGFAK 606 (633)
Q Consensus 573 f--~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k 606 (633)
| |.+..+|+||||....||+.. |+-||=+.+.|
T Consensus 403 FNd~~~e~dvlVAsDAIGMGLNL~-IrRiiF~sl~K 437 (700)
T KOG0953|consen 403 FNDPSNECDVLVASDAIGMGLNLN-IRRIIFYSLIK 437 (700)
T ss_pred hCCCCCccceEEeecccccccccc-eeEEEEeeccc
Confidence 3 458899999999999999998 99898766655
No 122
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=98.87 E-value=6.2e-09 Score=120.46 Aligned_cols=90 Identities=17% Similarity=0.177 Sum_probs=80.1
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCcc
Q 035699 518 IGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIK 597 (633)
Q Consensus 518 ~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~ 597 (633)
..++||||+|+..++.+++.|.+. ++.+..+||++++.+|.+++..|+.|...|||||+++++|+|+|+|+
T Consensus 442 g~~vLIf~~tk~~ae~L~~~L~~~---------gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~ 512 (655)
T TIGR00631 442 NERVLVTTLTKKMAEDLTDYLKEL---------GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVS 512 (655)
T ss_pred CCEEEEEECCHHHHHHHHHHHhhh---------ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCc
Confidence 468999999999999999999875 78899999999999999999999999999999999999999999999
Q ss_pred EEEeCC-----CCcc-ccccCCCCc
Q 035699 598 YVIDPG-----FAKV-KSYNPKTGM 616 (633)
Q Consensus 598 ~VID~G-----~~k~-~~yd~~~g~ 616 (633)
+||+++ +|.. .+|-++.|.
T Consensus 513 lVvi~DadifG~p~~~~~~iqriGR 537 (655)
T TIGR00631 513 LVAILDADKEGFLRSERSLIQTIGR 537 (655)
T ss_pred EEEEeCcccccCCCCHHHHHHHhcC
Confidence 999875 7754 346665544
No 123
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.85 E-value=1.7e-07 Score=111.45 Aligned_cols=99 Identities=12% Similarity=0.098 Sum_probs=70.2
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccC-CCCHHHHHHHhCCCCCCC
Q 035699 499 ADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYG-NLPTELQAKIFEPTPEGA 577 (633)
Q Consensus 499 ~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg-~l~~~~R~~i~~~f~~g~ 577 (633)
..|.......+..+. ..+|.+|||+|+.+..+.+++.|... ...+ ...| +.+ +.++.+.|..+.
T Consensus 630 ~~~~~~~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~---------~~~~-l~Qg~~~~---~~~l~~~F~~~~ 694 (820)
T PRK07246 630 EVYAEEIAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQW---------QVSH-LAQEKNGT---AYNIKKRFDRGE 694 (820)
T ss_pred HHHHHHHHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhc---------CCcE-EEeCCCcc---HHHHHHHHHcCC
Confidence 467766666666655 34699999999999999999998652 2333 2223 233 345677787788
Q ss_pred eeEEEeCCccccCCCCC--CccEEEeCCCCccccccC
Q 035699 578 RKVVLATNIAETSLTID--GIKYVIDPGFAKVKSYNP 612 (633)
Q Consensus 578 rkVLvATdIAerGLdIp--~V~~VID~G~~k~~~yd~ 612 (633)
..||++|.-.--|+|+| +...||=+++|..+-.||
T Consensus 695 ~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP 731 (820)
T PRK07246 695 QQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDP 731 (820)
T ss_pred CeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCH
Confidence 88999999999999997 345555578887654443
No 124
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.82 E-value=1.2e-08 Score=95.51 Aligned_cols=114 Identities=19% Similarity=0.278 Sum_probs=75.6
Q ss_pred cCCeEEEeccCCChhhch-HHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccceEeeeeecc-cccCCCCc
Q 035699 344 EYPVLVIVGETGSGKTTQ-IPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFE-DCTSDKTV 421 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~-lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~VGy~ir~e-~~~s~~t~ 421 (633)
.++..+|--.+|||||+. +|.++.+. +.+++++|++.|||++|.++++.+. |.. +.+....- .....+..
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~-i~~~~rvLvL~PTRvva~em~~aL~---~~~----~~~~t~~~~~~~~g~~~ 74 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREA-IKRRLRVLVLAPTRVVAEEMYEALK---GLP----VRFHTNARMRTHFGSSI 74 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHH-HHTT--EEEEESSHHHHHHHHHHTT---TSS----EEEESTTSS----SSSS
T ss_pred CCceeEEecCCCCCCcccccHHHHHHH-HHccCeEEEecccHHHHHHHHHHHh---cCC----cccCceeeeccccCCCc
Confidence 456778899999999996 66666655 6667799999999999999887653 222 22222111 12235567
Q ss_pred EEEeCchHHHHHHhcCCCCCCceeee-eecccC-----------------CCccEEEeeccc
Q 035699 422 LKYMTDGMLLREIVLEPSLESYSVLI-DLINYR-----------------PDLKLLISSATL 465 (633)
Q Consensus 422 Iiv~TpGrLL~~l~~~~~L~~~s~vI-di~~~r-----------------pdlklil~SAT~ 465 (633)
|-+||.+-+.+.+++...+.+|+++| |.+|+. ...++|+||||.
T Consensus 75 i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~g~~~~i~mTATP 136 (148)
T PF07652_consen 75 IDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELAESGEAKVIFMTATP 136 (148)
T ss_dssp EEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHTTS-EEEEEESS-
T ss_pred ccccccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeHHHhhhccCeeEEEEeCCC
Confidence 88999999888887744899999999 665542 346899999997
No 125
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.82 E-value=6.9e-08 Score=112.43 Aligned_cols=121 Identities=21% Similarity=0.197 Sum_probs=78.6
Q ss_pred cEEEeecccC--HHhHhhhhCCCCEEEeCCee------eeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcH
Q 035699 457 KLLISSATLD--AENFSDYFGSAPIFKIPRRR------YHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQ 528 (633)
Q Consensus 457 klil~SAT~~--~~~~s~~f~~~pii~i~gr~------~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~ 528 (633)
++..|+.|.. ...|.+.+ +-+++.||... +|..++ ......+.+.+..+...|.. .-||||-+.+.
T Consensus 361 kL~GMTGTa~te~~Ef~~iY-~l~vv~IPtnkp~~R~d~~d~v~---~t~~~K~~AI~~ei~~~~~~--grPVLIgT~SI 434 (870)
T CHL00122 361 KLSGMTGTAKTEELEFEKIY-NLEVVCIPTHRPMLRKDLPDLIY---KDELSKWRAIADECLQMHQT--GRPILIGTTTI 434 (870)
T ss_pred hhcccCCCCHHHHHHHHHHh-CCCEEECCCCCCccceeCCCeEE---eCHHHHHHHHHHHHHHHHhc--CCCEEEeeCCH
Confidence 4556666662 23344433 45566666421 122222 22345566666777776654 35899999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCceEEEeccCCC-C-HHHHHHHhCCCCCCCeeEEEeCCccccCCCCC
Q 035699 529 DQFETAEEILKQRTRGLGTKIAELIICPIYGNL-P-TELQAKIFEPTPEGARKVVLATNIAETSLTID 594 (633)
Q Consensus 529 ~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l-~-~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp 594 (633)
+..+.+...|... +++.-.|++.- . ..+-..|-+.-.+|. |-||||.|.||.||-
T Consensus 435 e~SE~ls~~L~~~---------gi~h~vLNAk~~~~~~EA~IIA~AG~~G~--VTIATNMAGRGTDI~ 491 (870)
T CHL00122 435 EKSELLSQLLKEY---------RLPHQLLNAKPENVRRESEIVAQAGRKGS--ITIATNMAGRGTDII 491 (870)
T ss_pred HHHHHHHHHHHHc---------CCccceeeCCCccchhHHHHHHhcCCCCc--EEEeccccCCCcCee
Confidence 9999999999884 67777777752 2 334444455666664 889999999999994
No 126
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=98.78 E-value=2.4e-07 Score=111.31 Aligned_cols=79 Identities=18% Similarity=0.164 Sum_probs=68.0
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCC---CCeeEEEeCCccccCCCCC
Q 035699 518 IGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPE---GARKVVLATNIAETSLTID 594 (633)
Q Consensus 518 ~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~---g~rkVLvATdIAerGLdIp 594 (633)
..++|||+.-...++.+.+.|... ++.++.|||+++...|..++..|.. +..-+||+|..+..||++.
T Consensus 487 g~KVLIFSQft~~LdiLed~L~~~---------g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt 557 (1033)
T PLN03142 487 DSRVLIFSQMTRLLDILEDYLMYR---------GYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLA 557 (1033)
T ss_pred CCeEEeehhHHHHHHHHHHHHHHc---------CCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchh
Confidence 358999999888888888888653 7889999999999999999999953 3346789999999999999
Q ss_pred CccEEEeCCCC
Q 035699 595 GIKYVIDPGFA 605 (633)
Q Consensus 595 ~V~~VID~G~~ 605 (633)
..++||.++.+
T Consensus 558 ~Ad~VIiyD~d 568 (1033)
T PLN03142 558 TADIVILYDSD 568 (1033)
T ss_pred hCCEEEEeCCC
Confidence 99999998765
No 127
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=98.76 E-value=1.8e-08 Score=117.12 Aligned_cols=90 Identities=18% Similarity=0.177 Sum_probs=80.1
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCcc
Q 035699 518 IGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIK 597 (633)
Q Consensus 518 ~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~ 597 (633)
..++||||+|+..++.+++.|... ++.+..+||++++.+|..++..|+.|...|+|||+++++|+|+|+|+
T Consensus 446 g~~viIf~~t~~~ae~L~~~L~~~---------gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~ 516 (652)
T PRK05298 446 GERVLVTTLTKRMAEDLTDYLKEL---------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVS 516 (652)
T ss_pred CCEEEEEeCCHHHHHHHHHHHhhc---------ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCc
Confidence 468999999999999999999874 78999999999999999999999999999999999999999999999
Q ss_pred EEEeCC-----CCcc-ccccCCCCc
Q 035699 598 YVIDPG-----FAKV-KSYNPKTGM 616 (633)
Q Consensus 598 ~VID~G-----~~k~-~~yd~~~g~ 616 (633)
+||+++ ||.. .+|-++.|.
T Consensus 517 lVii~d~eifG~~~~~~~yiqr~GR 541 (652)
T PRK05298 517 LVAILDADKEGFLRSERSLIQTIGR 541 (652)
T ss_pred EEEEeCCcccccCCCHHHHHHHhcc
Confidence 999876 4433 347766655
No 128
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.76 E-value=8.5e-08 Score=112.16 Aligned_cols=83 Identities=18% Similarity=0.109 Sum_probs=61.7
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCe
Q 035699 499 ADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGAR 578 (633)
Q Consensus 499 ~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~r 578 (633)
..++.+.+..+..+|.. .-+|||-+.+.+..+.+...|... +++.-.|.+.....+-..|-+...+|.
T Consensus 432 ~eK~~Ai~~ei~~~~~~--GrPVLVGT~SVe~SE~ls~~L~~~---------gi~h~VLNAk~~~~EA~IIa~AG~~Ga- 499 (913)
T PRK13103 432 EEKYAAIITDIKECMAL--GRPVLVGTATIETSEHMSNLLKKE---------GIEHKVLNAKYHEKEAEIIAQAGRPGA- 499 (913)
T ss_pred HHHHHHHHHHHHHHHhC--CCCEEEEeCCHHHHHHHHHHHHHc---------CCcHHHhccccchhHHHHHHcCCCCCc-
Confidence 45566667777777754 358999999999999999999885 555555666544444445555666664
Q ss_pred eEEEeCCccccCCCCC
Q 035699 579 KVVLATNIAETSLTID 594 (633)
Q Consensus 579 kVLvATdIAerGLdIp 594 (633)
|-||||.|.||-||-
T Consensus 500 -VTIATNMAGRGTDIk 514 (913)
T PRK13103 500 -LTIATNMAGRGTDIL 514 (913)
T ss_pred -EEEeccCCCCCCCEe
Confidence 889999999999994
No 129
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.75 E-value=7.4e-07 Score=97.83 Aligned_cols=92 Identities=14% Similarity=0.144 Sum_probs=78.6
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCC
Q 035699 498 EADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGA 577 (633)
Q Consensus 498 ~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~ 577 (633)
..+-++..+..+.... .....+||-+-|+.-++.+.+.|.+. ++.+..+|+++..-+|.+|+...+.|.
T Consensus 428 ~~~QvdDL~~EI~~r~--~~~eRvLVTtLTKkmAEdLT~Yl~e~---------gikv~YlHSdidTlER~eIirdLR~G~ 496 (663)
T COG0556 428 TKGQVDDLLSEIRKRV--AKNERVLVTTLTKKMAEDLTEYLKEL---------GIKVRYLHSDIDTLERVEIIRDLRLGE 496 (663)
T ss_pred CCCcHHHHHHHHHHHH--hcCCeEEEEeehHHHHHHHHHHHHhc---------CceEEeeeccchHHHHHHHHHHHhcCC
Confidence 3444555555554432 22468999999999999999999985 899999999999999999999999999
Q ss_pred eeEEEeCCccccCCCCCCccEEE
Q 035699 578 RKVVLATNIAETSLTIDGIKYVI 600 (633)
Q Consensus 578 rkVLvATdIAerGLdIp~V~~VI 600 (633)
..|||--|++--|||||.|.+|.
T Consensus 497 ~DvLVGINLLREGLDiPEVsLVA 519 (663)
T COG0556 497 FDVLVGINLLREGLDLPEVSLVA 519 (663)
T ss_pred ccEEEeehhhhccCCCcceeEEE
Confidence 99999999999999999999886
No 130
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.70 E-value=4.3e-07 Score=105.88 Aligned_cols=83 Identities=18% Similarity=0.135 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCC-CC-HHHHHHHhCCCCCC
Q 035699 499 ADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGN-LP-TELQAKIFEPTPEG 576 (633)
Q Consensus 499 ~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~-l~-~~~R~~i~~~f~~g 576 (633)
...+.+.+..+...|.. ..||||-+.+.+..+.+...|... +++.-.|++. .. ..+-..|-+...+|
T Consensus 422 ~~K~~Ai~~ei~~~~~~--GrPVLIgT~SVe~SE~ls~~L~~~---------gi~h~vLNAk~~~~~~EA~IIa~AG~~G 490 (939)
T PRK12902 422 IAKWRAVANETAEMHKQ--GRPVLVGTTSVEKSELLSALLQEQ---------GIPHNLLNAKPENVEREAEIVAQAGRKG 490 (939)
T ss_pred HHHHHHHHHHHHHHHhC--CCCEEEeeCCHHHHHHHHHHHHHc---------CCchheeeCCCcchHhHHHHHHhcCCCC
Confidence 45566666777777654 468999999999999999999885 6666667775 23 23333444556666
Q ss_pred CeeEEEeCCccccCCCCC
Q 035699 577 ARKVVLATNIAETSLTID 594 (633)
Q Consensus 577 ~rkVLvATdIAerGLdIp 594 (633)
. |-||||.|.||-||-
T Consensus 491 a--VTIATNMAGRGTDIk 506 (939)
T PRK12902 491 A--VTIATNMAGRGTDII 506 (939)
T ss_pred c--EEEeccCCCCCcCEe
Confidence 4 889999999999984
No 131
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=98.70 E-value=1.5e-08 Score=84.74 Aligned_cols=57 Identities=18% Similarity=0.225 Sum_probs=53.9
Q ss_pred CceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCc
Q 035699 550 AELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAK 606 (633)
Q Consensus 550 ~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k 606 (633)
.++.+..+||++++.+|..+++.|..|...|||||+++++|||+|++++||.++.|.
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~ 62 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPW 62 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSES
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCC
Confidence 388999999999999999999999999999999999999999999999999988754
No 132
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.69 E-value=4.6e-08 Score=107.10 Aligned_cols=267 Identities=15% Similarity=0.038 Sum_probs=168.1
Q ss_pred CCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhc-cccCCeeeecchhHHHHHHHHHHHHHHhCCcccce--
Q 035699 329 LPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAG-YTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHE-- 405 (633)
Q Consensus 329 LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~-~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~-- 405 (633)
=.-|.+|.+++..+..+.++++.-.|.|||.+..-....... .......++..|+.+++..-.+ |..+..+
T Consensus 285 E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~------~~~V~~~~I 358 (1034)
T KOG4150|consen 285 ESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSK------GQVVHVEVI 358 (1034)
T ss_pred cchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCC------ceEEEEEeh
Confidence 356788999999999999999999999999964221111110 1111145667777777654322 1111000
Q ss_pred ----Eeeeeeccccc--------CCCCcEEEeCchHHHHHHhcCCCCCCceeee--------------------------
Q 035699 406 ----VGYSIRFEDCT--------SDKTVLKYMTDGMLLREIVLEPSLESYSVLI-------------------------- 447 (633)
Q Consensus 406 ----VGy~ir~e~~~--------s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-------------------------- 447 (633)
..|.-..+..+ ..+.+.+|.-|.++...++.+. .+|.+.+
T Consensus 359 ~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~--~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~ 436 (1034)
T KOG4150|consen 359 KARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKS--LCYNVPVFEELCKDTNSCALYLFPTKALAQDQL 436 (1034)
T ss_pred hhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhc--cccccHHHHHHHhcccceeeeecchhhHHHHHH
Confidence 01211111111 1357889999999887665332 1222211
Q ss_pred ----eeccc---CCCccEEEeeccc-C-HHhHhhhhCC--CCEEEeCCeeeeEEEEEEcCC---------chhHHHHHHH
Q 035699 448 ----DLINY---RPDLKLLISSATL-D-AENFSDYFGS--APIFKIPRRRYHVELFYTKAP---------EADYIEAAIV 507 (633)
Q Consensus 448 ----di~~~---rpdlklil~SAT~-~-~~~~s~~f~~--~pii~i~gr~~pv~~~y~~~~---------~~~yl~~~v~ 507 (633)
++++. ...++++-.|||+ + ....++.|+- ...+++.|..-.-+.+....| ..+++.+.-.
T Consensus 437 R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~ 516 (1034)
T KOG4150|consen 437 RALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSH 516 (1034)
T ss_pred HHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHH
Confidence 33332 2467888889999 3 4556666653 345777775544343333222 2344444333
Q ss_pred HHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCce--EEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCC
Q 035699 508 TALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAEL--IICPIYGNLPTELQAKIFEPTPEGARKVVLATN 585 (633)
Q Consensus 508 ~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~--~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATd 585 (633)
.+.++.. ..-.+|-||+.+.-|+.+....+..+-.-| +++ .|..+.|+-..+.|.+|....-.|.-+-|||||
T Consensus 517 ~~~~~i~--~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~---~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTN 591 (1034)
T KOG4150|consen 517 LFAEMVQ--HGLRCIAFCPSRKLCELVLCLTREILAETA---PHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATN 591 (1034)
T ss_pred HHHHHHH--cCCcEEEeccHHHHHHHHHHHHHHHHHHhh---HHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecc
Confidence 3333332 234799999999999988777666532212 222 366789999999999998877789999999999
Q ss_pred ccccCCCCCCccEEEeCCCCccc
Q 035699 586 IAETSLTIDGIKYVIDPGFAKVK 608 (633)
Q Consensus 586 IAerGLdIp~V~~VID~G~~k~~ 608 (633)
.+|.||||.+.+.|+.+|||...
T Consensus 592 ALELGIDIG~LDAVl~~GFP~S~ 614 (1034)
T KOG4150|consen 592 ALELGIDIGHLDAVLHLGFPGSI 614 (1034)
T ss_pred hhhhccccccceeEEEccCchhH
Confidence 99999999999999999999753
No 133
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.67 E-value=5.9e-08 Score=113.94 Aligned_cols=143 Identities=16% Similarity=0.243 Sum_probs=103.4
Q ss_pred cEEEeeccc--CHHhHhhhhCCCCEEEeCCeeeeE------EEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcH
Q 035699 457 KLLISSATL--DAENFSDYFGSAPIFKIPRRRYHV------ELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQ 528 (633)
Q Consensus 457 klil~SAT~--~~~~~s~~f~~~pii~i~gr~~pv------~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~ 528 (633)
++-+|+.|. .+..|.+.+ +-+++.||..+ |+ +..| ......+.+.+..+...|. .+.+|||||+|+
T Consensus 535 kLaGMTGTA~te~~Ef~~iY-~L~Vv~IPTnr-P~~R~D~~d~vy--~t~~eK~~Ali~~I~~~~~--~grpVLIft~Sv 608 (1025)
T PRK12900 535 KLAGMTGTAETEASEFFEIY-KLDVVVIPTNK-PIVRKDMDDLVY--KTRREKYNAIVLKVEELQK--KGQPVLVGTASV 608 (1025)
T ss_pred hhcccCCCChhHHHHHHHHh-CCcEEECCCCC-CcceecCCCeEe--cCHHHHHHHHHHHHHHHhh--CCCCEEEEeCcH
Confidence 677888887 344565544 56677777532 22 1222 2233445555555544443 346899999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCC---Ccc-----EEE
Q 035699 529 DQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTID---GIK-----YVI 600 (633)
Q Consensus 529 ~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp---~V~-----~VI 600 (633)
+.++.+.+.|... +++...||+ .+.+|...+..|..+.-.|+||||+|+||+||+ +|. +||
T Consensus 609 e~sE~Ls~~L~~~---------gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VI 677 (1025)
T PRK12900 609 EVSETLSRMLRAK---------RIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFIL 677 (1025)
T ss_pred HHHHHHHHHHHHc---------CCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceee
Confidence 9999999999885 788889997 578888888999888999999999999999999 665 448
Q ss_pred eCCCCccc-cccCCCCc
Q 035699 601 DPGFAKVK-SYNPKTGM 616 (633)
Q Consensus 601 D~G~~k~~-~yd~~~g~ 616 (633)
++.++... .|+++.|.
T Consensus 678 gterhes~Rid~Ql~GR 694 (1025)
T PRK12900 678 GSERHESRRIDRQLRGR 694 (1025)
T ss_pred CCCCCchHHHHHHHhhh
Confidence 88887654 47776654
No 134
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.62 E-value=8.4e-07 Score=102.59 Aligned_cols=146 Identities=21% Similarity=0.189 Sum_probs=100.5
Q ss_pred CCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccc--cCCeeeecchhHHHHHHHHHHHHHHhCCcc---c
Q 035699 329 LPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYT--KQGKIGCTQLRRVAAMSVAARVSQEMGVKL---G 403 (633)
Q Consensus 329 LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~--~~gkilitqPrR~aA~qva~rva~e~g~~v---g 403 (633)
+--..||.+.+..+-.+..++|+|||-+|||. ++.|..+..+. ..+-++.+.|+..+..|++.-|-..+..+. |
T Consensus 510 F~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTf-isfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg 588 (1330)
T KOG0949|consen 510 FCPDEWQRELLDSVDRNESAVIVAPTSAGKTF-ISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRG 588 (1330)
T ss_pred cCCcHHHHHHhhhhhcccceEEEeeccCCcee-ccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccc
Confidence 45566889999999999999999999999985 44455554332 234778899999999999887766653221 2
Q ss_pred ceEeeeeeccccc-CCCCcEEEeCchHHHHHHhcCC----CCCCceeee-eeccc---------------CCCccEEEee
Q 035699 404 HEVGYSIRFEDCT-SDKTVLKYMTDGMLLREIVLEP----SLESYSVLI-DLINY---------------RPDLKLLISS 462 (633)
Q Consensus 404 ~~VGy~ir~e~~~-s~~t~Iiv~TpGrLL~~l~~~~----~L~~~s~vI-di~~~---------------rpdlklil~S 462 (633)
.++--....+-+. .-.++|+|+-|..|-.+|++.| +...+.++| |..|. .-.+-+|.+|
T Consensus 589 ~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~CP~L~LS 668 (1330)
T KOG0949|consen 589 VSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIPCPFLVLS 668 (1330)
T ss_pred hhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhcCCCeeEEe
Confidence 2211011111111 1257899999999988887754 577888888 32221 1224589999
Q ss_pred ccc-CHHhHhhhhC
Q 035699 463 ATL-DAENFSDYFG 475 (633)
Q Consensus 463 AT~-~~~~~s~~f~ 475 (633)
||+ |+..|..|+.
T Consensus 669 ATigN~~l~qkWln 682 (1330)
T KOG0949|consen 669 ATIGNPNLFQKWLN 682 (1330)
T ss_pred cccCCHHHHHHHHH
Confidence 999 8888888874
No 135
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=98.58 E-value=7.5e-08 Score=79.85 Aligned_cols=56 Identities=29% Similarity=0.424 Sum_probs=52.9
Q ss_pred ceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCc
Q 035699 551 ELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAK 606 (633)
Q Consensus 551 ~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k 606 (633)
++.+..+||++++.+|..++..|..|...|||+|++++.|+|++++++||.++.+.
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~ 66 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPW 66 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCC
Confidence 78899999999999999999999999999999999999999999999999988743
No 136
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.57 E-value=1.6e-06 Score=99.72 Aligned_cols=256 Identities=14% Similarity=0.179 Sum_probs=146.7
Q ss_pred HHHHHHcC-CeEEEeccCCChhhchHHHHH---HHhccccCCeeeecchhHHHHHHHHHHHHHHh--CCcccceEeeeee
Q 035699 338 LLQAVSEY-PVLVIVGETGSGKTTQIPQYL---YEAGYTKQGKIGCTQLRRVAAMSVAARVSQEM--GVKLGHEVGYSIR 411 (633)
Q Consensus 338 il~al~~~-~~vIi~a~TGSGKTt~lp~~L---le~~~~~~gkilitqPrR~aA~qva~rva~e~--g~~vg~~VGy~ir 411 (633)
+.+++..| +-++++=.||||||-...+++ +..++. ++||++.-|..|..|-...+...+ +..+...-+
T Consensus 177 v~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~--KRVLFLaDR~~Lv~QA~~af~~~~P~~~~~n~i~~---- 250 (875)
T COG4096 177 VIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWV--KRVLFLADRNALVDQAYGAFEDFLPFGTKMNKIED---- 250 (875)
T ss_pred HHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchh--heeeEEechHHHHHHHHHHHHHhCCCccceeeeec----
Confidence 44566655 337778889999995544433 333322 389999999999988776554443 211111111
Q ss_pred cccccCCCCcEEEeCchHHHHHHhcC-C-----CCCCceeee-eecccCC-----------CccEEEeecccCH-HhHh-
Q 035699 412 FEDCTSDKTVLKYMTDGMLLREIVLE-P-----SLESYSVLI-DLINYRP-----------DLKLLISSATLDA-ENFS- 471 (633)
Q Consensus 412 ~e~~~s~~t~Iiv~TpGrLL~~l~~~-~-----~L~~~s~vI-di~~~rp-----------dlklil~SAT~~~-~~~s- 471 (633)
......+.|-++|-..+...+... . .-.+|.+|| |++|..- +.-+++++||+.. ...+
T Consensus 251 --~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~~~~~I~dYFdA~~~gLTATP~~~~d~~T 328 (875)
T COG4096 251 --KKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYSEWSSILDYFDAATQGLTATPKETIDRST 328 (875)
T ss_pred --ccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHhhhHHHHHHHHHHHHhhccCccccccccc
Confidence 111224689999998888777544 1 456688888 7776421 1123344898833 1111
Q ss_pred -hhhCCCCEEE------------eCCeeeeEEEEEE-------cC-------------CchhH--------------HHH
Q 035699 472 -DYFGSAPIFK------------IPRRRYHVELFYT-------KA-------------PEADY--------------IEA 504 (633)
Q Consensus 472 -~~f~~~pii~------------i~gr~~pv~~~y~-------~~-------------~~~~y--------------l~~ 504 (633)
.||++.|+.. +|-+...+..... .. ...+| .+.
T Consensus 329 ~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~ 408 (875)
T COG4096 329 YGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTET 408 (875)
T ss_pred ccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcccccccccccchhccccchHHH
Confidence 4665656532 2211111111110 00 00000 111
Q ss_pred HHHHHHHHHhc--C--CCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHH-HHhCCCCCCCee
Q 035699 505 AIVTALQIHVN--E--PIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQA-KIFEPTPEGARK 579 (633)
Q Consensus 505 ~v~~l~~i~~~--~--~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~-~i~~~f~~g~rk 579 (633)
...++...+.. . ..|+.||||.+...++.+.+.|...... ..+--++.|-|.-.+.++. ..|.. ...-..
T Consensus 409 V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype----~~~~~a~~IT~d~~~~q~~Id~f~~-ke~~P~ 483 (875)
T COG4096 409 VARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPE----YNGRYAMKITGDAEQAQALIDNFID-KEKYPR 483 (875)
T ss_pred HHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCcc----ccCceEEEEeccchhhHHHHHHHHh-cCCCCc
Confidence 12233333333 1 1478999999999999999999987543 2234466666665444322 22322 344568
Q ss_pred EEEeCCccccCCCCCCccEEEeCCCCc
Q 035699 580 VVLATNIAETSLTIDGIKYVIDPGFAK 606 (633)
Q Consensus 580 VLvATdIAerGLdIp~V~~VID~G~~k 606 (633)
|+|+-+++.||||+|.|..+|=.-.++
T Consensus 484 IaitvdlL~TGiDvpev~nlVF~r~Vr 510 (875)
T COG4096 484 IAITVDLLTTGVDVPEVVNLVFDRKVR 510 (875)
T ss_pred eEEehhhhhcCCCchheeeeeehhhhh
Confidence 999999999999999998887544333
No 137
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.57 E-value=1.5e-06 Score=101.14 Aligned_cols=137 Identities=18% Similarity=0.189 Sum_probs=86.6
Q ss_pred cEEEeecccC--HHhHhhhhCCCCEEEeCCeeeeEEEEE----EcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHH
Q 035699 457 KLLISSATLD--AENFSDYFGSAPIFKIPRRRYHVELFY----TKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQ 530 (633)
Q Consensus 457 klil~SAT~~--~~~~s~~f~~~pii~i~gr~~pv~~~y----~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~e 530 (633)
++-+|+.|.. ...|.+.+ +-+++.||... |+.-.- ........+.+.+..+...|.. .-+|||.+.+.+.
T Consensus 363 kLsGMTGTA~te~~Ef~~iY-~l~Vv~IPTnk-P~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~--gqPVLVgT~SIe~ 438 (925)
T PRK12903 363 KLSGMTGTAKTEEQEFIDIY-NMRVNVVPTNK-PVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKK--GQPILIGTAQVED 438 (925)
T ss_pred hhhccCCCCHHHHHHHHHHh-CCCEEECCCCC-CeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhc--CCCEEEEeCcHHH
Confidence 4556666652 23344333 45666666431 221111 1112345566666777777643 4689999999999
Q ss_pred HHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCC---cc-----EEEeC
Q 035699 531 FETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDG---IK-----YVIDP 602 (633)
Q Consensus 531 ie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~---V~-----~VID~ 602 (633)
.+.+...|... +++.-.|++.-...+-..|-+...+| .|.||||.|.||.||-- |. |||-+
T Consensus 439 SE~ls~~L~~~---------gi~h~vLNAk~~e~EA~IIa~AG~~G--aVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgT 507 (925)
T PRK12903 439 SETLHELLLEA---------NIPHTVLNAKQNAREAEIIAKAGQKG--AITIATNMAGRGTDIKLSKEVLELGGLYVLGT 507 (925)
T ss_pred HHHHHHHHHHC---------CCCceeecccchhhHHHHHHhCCCCC--eEEEecccccCCcCccCchhHHHcCCcEEEec
Confidence 99999999884 66666777764333333444455555 58999999999999962 22 89988
Q ss_pred CCCccc
Q 035699 603 GFAKVK 608 (633)
Q Consensus 603 G~~k~~ 608 (633)
..+...
T Consensus 508 erheSr 513 (925)
T PRK12903 508 DKAESR 513 (925)
T ss_pred ccCchH
Confidence 776543
No 138
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.57 E-value=1.4e-05 Score=92.16 Aligned_cols=95 Identities=15% Similarity=0.097 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCC----C
Q 035699 501 YIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPE----G 576 (633)
Q Consensus 501 yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~----g 576 (633)
|..+....+..++.. ..|.+||-+++...++.+++.|...+ .+. +.++|..+. +...++.|+. |
T Consensus 454 ~~~~~~~~~~~~~~~-~~G~~lvLfTS~~~~~~~~~~l~~~l--------~~~-~l~qg~~~~--~~~l~~~f~~~~~~~ 521 (636)
T TIGR03117 454 WLENVSLSTAAILRK-AQGGTLVLTTAFSHISAIGQLVELGI--------PAE-IVIQSEKNR--LASAEQQFLALYANG 521 (636)
T ss_pred HHHHHHHHHHHHHHH-cCCCEEEEechHHHHHHHHHHHHhhc--------CCC-EEEeCCCcc--HHHHHHHHHHhhcCC
Confidence 655556666666543 46899999999999999999997753 233 344565532 2233444443 5
Q ss_pred CeeEEEeCCccccCCCC----------CCccEEEeCCCCcc
Q 035699 577 ARKVVLATNIAETSLTI----------DGIKYVIDPGFAKV 607 (633)
Q Consensus 577 ~rkVLvATdIAerGLdI----------p~V~~VID~G~~k~ 607 (633)
...||++|+-+-.|||+ +.+++||=.-+|..
T Consensus 522 ~~~vL~gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~ 562 (636)
T TIGR03117 522 IQPVLIAAGGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFG 562 (636)
T ss_pred CCcEEEeCCccccccccCCccCCCCCCCcccEEEEEeCCCC
Confidence 68999999999999999 34777776566644
No 139
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.55 E-value=5.1e-06 Score=98.52 Aligned_cols=75 Identities=19% Similarity=0.190 Sum_probs=53.5
Q ss_pred EEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCC--------------------------CCC
Q 035699 522 LVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEP--------------------------TPE 575 (633)
Q Consensus 522 LVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~--------------------------f~~ 575 (633)
||=+++...+-.++..|.... .+....+.+|++||..+...|..+.+. ...
T Consensus 760 liR~anI~p~V~~A~~L~~~~---~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~ 836 (1110)
T TIGR02562 760 LIRVANIDPLIRLAQFLYALL---AEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPAL 836 (1110)
T ss_pred EEEEcCchHHHHHHHHHHhhc---cccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhccccc
Confidence 677777777777777776542 233346889999999987777665422 113
Q ss_pred CCeeEEEeCCccccCCCCCCccEEE
Q 035699 576 GARKVVLATNIAETSLTIDGIKYVI 600 (633)
Q Consensus 576 g~rkVLvATdIAerGLdIp~V~~VI 600 (633)
+...|||||.|.|.|+||+ .+++|
T Consensus 837 ~~~~i~v~Tqv~E~g~D~d-fd~~~ 860 (1110)
T TIGR02562 837 NHLFIVLATPVEEVGRDHD-YDWAI 860 (1110)
T ss_pred CCCeEEEEeeeEEEEeccc-CCeee
Confidence 5779999999999999999 44443
No 140
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=98.52 E-value=3.9e-07 Score=87.32 Aligned_cols=133 Identities=16% Similarity=0.067 Sum_probs=83.4
Q ss_pred CCChHHHHHHHHHHHc-------CCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCc
Q 035699 329 LPIYPFREELLQAVSE-------YPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVK 401 (633)
Q Consensus 329 LPi~~~q~~il~al~~-------~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~ 401 (633)
+.++++|.+++..+.+ +..+++.++||||||..+..++..... ++++++|+..++.|....+.......
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~----~~l~~~p~~~l~~Q~~~~~~~~~~~~ 77 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR----KVLIVAPNISLLEQWYDEFDDFGSEK 77 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC----EEEEEESSHHHHHHHHHHHHHHSTTS
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc----ceeEecCHHHHHHHHHHHHHHhhhhh
Confidence 3567889888888884 688999999999999876655554422 89999999999988887773322211
Q ss_pred ccceEeee-----------------eecccccCCCCcEEEeCchHHHHHHhcCC------------CCCCceeee-eecc
Q 035699 402 LGHEVGYS-----------------IRFEDCTSDKTVLKYMTDGMLLREIVLEP------------SLESYSVLI-DLIN 451 (633)
Q Consensus 402 vg~~VGy~-----------------ir~e~~~s~~t~Iiv~TpGrLL~~l~~~~------------~L~~~s~vI-di~~ 451 (633)
.. ..+.. ............|.+.|...|........ ....+.+|| |.+|
T Consensus 78 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH 156 (184)
T PF04851_consen 78 YN-FFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAH 156 (184)
T ss_dssp EE-EEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGG
T ss_pred hh-hcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhh
Confidence 11 00000 00001112457899999999998865321 233556666 6665
Q ss_pred c------------CCCccEEEeecccC
Q 035699 452 Y------------RPDLKLLISSATLD 466 (633)
Q Consensus 452 ~------------rpdlklil~SAT~~ 466 (633)
. .+...+|.||||+.
T Consensus 157 ~~~~~~~~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 157 HYPSDSSYREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp CTHHHHHHHHHHHSSCCEEEEEESS-S
T ss_pred hcCCHHHHHHHHcCCCCeEEEEEeCcc
Confidence 3 24556899999973
No 141
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.35 E-value=4.6e-05 Score=92.25 Aligned_cols=101 Identities=15% Similarity=0.231 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCe
Q 035699 499 ADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGAR 578 (633)
Q Consensus 499 ~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~r 578 (633)
..|.......+..++.. .+|.+|||+|+....+.+++.|..... ..++.+.. + ++....|.++++.|..+..
T Consensus 734 ~~~~~~la~~i~~l~~~-~~g~~LVLFtSy~~l~~v~~~l~~~~~-----~~~~~ll~-Q-g~~~~~r~~l~~~F~~~~~ 805 (928)
T PRK08074 734 EEYIEEVAAYIAKIAKA-TKGRMLVLFTSYEMLKKTYYNLKNEEE-----LEGYVLLA-Q-GVSSGSRARLTKQFQQFDK 805 (928)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCEEEEECCHHHHHHHHHHHhhccc-----ccCceEEe-c-CCCCCCHHHHHHHHHhcCC
Confidence 45666666666666543 468999999999999999999976421 01232222 2 2322345677777877888
Q ss_pred eEEEeCCccccCCCCCC--ccEEEeCCCCcc
Q 035699 579 KVVLATNIAETSLTIDG--IKYVIDPGFAKV 607 (633)
Q Consensus 579 kVLvATdIAerGLdIp~--V~~VID~G~~k~ 607 (633)
.||++|.-..-|||+|| ..+||=.++|..
T Consensus 806 ~iLlG~~sFwEGVD~pg~~l~~viI~kLPF~ 836 (928)
T PRK08074 806 AILLGTSSFWEGIDIPGDELSCLVIVRLPFA 836 (928)
T ss_pred eEEEecCcccCccccCCCceEEEEEecCCCC
Confidence 89999999999999996 478888888864
No 142
>PF01480 PWI: PWI domain; InterPro: IPR002483 The PWI domain, named after a highly conserved PWI tri-peptide located within its N-terminal region, is a ~80 amino acid module, which is found either at the N terminus or at the C terminus of eukaryotic proteins involved in pre-mRNA processing []. It is generally found in association with other domains such as RRM and RS. The PWI domain is a RNA/DNA-binding domain that has an equal preference for single- and double-stranded nucleic acids and is likely to have multiple important functions in pre-mRNA processing []. Proteins containing this domain include the SR-related nuclear matrix protein of 160kDa (SRm160) splicing and 3'-end cleavage-stimulatory factor, and the mammalian splicing factor PRP3. The PWI domain is a soluble, globular and independently folded domain which consists of a four-helix bundle, with structured N- and C-terminal elements [].; GO: 0006397 mRNA processing; PDB: 1MP1_A 1X4Q_A.
Probab=98.34 E-value=6.5e-07 Score=75.67 Aligned_cols=63 Identities=29% Similarity=0.620 Sum_probs=53.5
Q ss_pred hhhhHhhhhhhhhhcCchhHHHHHHHHHhhccC-----ChHHHHHHhhhcCCCCCHhHHHHHHHHHhhCCC
Q 035699 6 NLKTWVSDKLISLLGYSQPAVVQYVIGLSKQAL-----SSADLETKLQEFEFSSTTETRAFAQEIFARVPR 71 (633)
Q Consensus 6 ~l~~wvsD~l~~llG~sd~~~~~~~~~~a~~a~-----s~~~l~~~L~~~~~~~~~~~~~Fa~el~~r~p~ 71 (633)
.|+.||++++..+||+.|.++|+||+++.++.. ++..+...|.+| .+.+|..|+.+||..+.-
T Consensus 3 ~lk~WI~~kl~e~lG~edd~lvdyI~~~l~~~~~~~~~~~~~l~~~L~~f---L~~~a~~Fv~~Lw~~l~~ 70 (77)
T PF01480_consen 3 KLKPWISKKLEEILGFEDDVLVDYIVALLKSHKSSNEPDPKELQEQLEDF---LDEEAEEFVDELWRLLIS 70 (77)
T ss_dssp HHHHHHHHHHHHHHSS--CHHHHHHHHHCCTT--SSS--HHHHHHHHTTT---TGHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccccccHHHHHHHHHHH---HHhhHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999877 999999999998 237899999999998753
No 143
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=98.23 E-value=1.4e-05 Score=87.31 Aligned_cols=250 Identities=16% Similarity=0.163 Sum_probs=147.7
Q ss_pred CChHHHHHHHHHHHcC---CeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccceE
Q 035699 330 PIYPFREELLQAVSEY---PVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEV 406 (633)
Q Consensus 330 Pi~~~q~~il~al~~~---~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~V 406 (633)
-+-|||+..|..+-+| +.=||+-|.|+|||+.=.- +..+-++.++|++..-+.++|...++..-........+
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvT----Aa~tikK~clvLcts~VSVeQWkqQfk~wsti~d~~i~ 377 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVT----AACTIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQIC 377 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeee----eeeeecccEEEEecCccCHHHHHHHHHhhcccCccceE
Confidence 3568999999988776 3457778999999953110 11122347888888888888888777554444333222
Q ss_pred eeeeecccccCCCCcEEEeCchHHH-------------HHHhcCCCCCCceeee-eecccCCC------------ccEEE
Q 035699 407 GYSIRFEDCTSDKTVLKYMTDGMLL-------------REIVLEPSLESYSVLI-DLINYRPD------------LKLLI 460 (633)
Q Consensus 407 Gy~ir~e~~~s~~t~Iiv~TpGrLL-------------~~l~~~~~L~~~s~vI-di~~~rpd------------lklil 460 (633)
-+.-...+....++.|+|.|.-|+- +++.. .....++ |..|.-|- .--+.
T Consensus 378 rFTsd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~----~EWGllllDEVHvvPA~MFRRVlsiv~aHcKLG 453 (776)
T KOG1123|consen 378 RFTSDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRG----REWGLLLLDEVHVVPAKMFRRVLSIVQAHCKLG 453 (776)
T ss_pred EeeccccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhc----CeeeeEEeehhccchHHHHHHHHHHHHHHhhcc
Confidence 2222112223456779999988874 22221 2233444 44333221 12357
Q ss_pred eeccc--CHHhHhh--hhCCCCEEEeC-------CeeeeEEEE--EEcCCc---hhHHH-----------------HHHH
Q 035699 461 SSATL--DAENFSD--YFGSAPIFKIP-------RRRYHVELF--YTKAPE---ADYIE-----------------AAIV 507 (633)
Q Consensus 461 ~SAT~--~~~~~s~--~f~~~pii~i~-------gr~~pv~~~--y~~~~~---~~yl~-----------------~~v~ 507 (633)
++||+ ..+++.. |+-++.+...+ |---.|..- +.++.. ..|+. .++.
T Consensus 454 LTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCq 533 (776)
T KOG1123|consen 454 LTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQ 533 (776)
T ss_pred ceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHH
Confidence 88998 3344442 33333332211 111112222 222211 12221 2345
Q ss_pred HHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCC-CeeEEEeCCc
Q 035699 508 TALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEG-ARKVVLATNI 586 (633)
Q Consensus 508 ~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g-~rkVLvATdI 586 (633)
.++.+|.. ...+||||-.+.-.....+-.|.+ ..|||.-+|.+|.+|++.|.-+ ..+-|+-.-|
T Consensus 534 fLI~~HE~-RgDKiIVFsDnvfALk~YAikl~K--------------pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKV 598 (776)
T KOG1123|consen 534 FLIKFHER-RGDKIIVFSDNVFALKEYAIKLGK--------------PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKV 598 (776)
T ss_pred HHHHHHHh-cCCeEEEEeccHHHHHHHHHHcCC--------------ceEECCCchhHHHHHHHhcccCCccceEEEeec
Confidence 56666765 457899998876554444433322 3478999999999999999855 5778888999
Q ss_pred cccCCCCCCccEEEeC
Q 035699 587 AETSLTIDGIKYVIDP 602 (633)
Q Consensus 587 AerGLdIp~V~~VID~ 602 (633)
+.+|||+|..++.|..
T Consensus 599 gDtSiDLPEAnvLIQI 614 (776)
T KOG1123|consen 599 GDTSIDLPEANVLIQI 614 (776)
T ss_pred cCccccCCcccEEEEE
Confidence 9999999999999963
No 144
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.15 E-value=0.00012 Score=85.22 Aligned_cols=234 Identities=17% Similarity=0.143 Sum_probs=135.3
Q ss_pred HcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccceEeeeeecccccC-CCCc
Q 035699 343 SEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTS-DKTV 421 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~VGy~ir~e~~~s-~~t~ 421 (633)
....+.+|.||.||||||++..|+.+.....+.+++++.-|+.++.+++.++.... . ...+-|..-...... ...+
T Consensus 47 ~~~~V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~-l--~gFv~Y~d~~~~~i~~~~~~ 123 (824)
T PF02399_consen 47 QKRGVLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAG-L--SGFVNYLDSDDYIIDGRPYD 123 (824)
T ss_pred CCCCeEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcC-C--CcceeeeccccccccccccC
Confidence 45678899999999999999999887633445599999999999999999885432 1 012222221111111 1123
Q ss_pred EEEeCchHHHHHHhcCCCCCCceeee-eec-----cc-------------------CCCccEEEeecccCHH---hHhhh
Q 035699 422 LKYMTDGMLLREIVLEPSLESYSVLI-DLI-----NY-------------------RPDLKLLISSATLDAE---NFSDY 473 (633)
Q Consensus 422 Iiv~TpGrLL~~l~~~~~L~~~s~vI-di~-----~~-------------------rpdlklil~SAT~~~~---~~s~~ 473 (633)
-+++.-..|.+.. .+.+.+|++|| |++ ++ +.--++|+|-||++.. .|..+
T Consensus 124 rLivqIdSL~R~~--~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdFl~~~ 201 (824)
T PF02399_consen 124 RLIVQIDSLHRLD--GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDFLASC 201 (824)
T ss_pred eEEEEehhhhhcc--cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHHHHHh
Confidence 4444455565542 34678899888 221 00 1123688889999764 34443
Q ss_pred hCCCCEEEeCCe----eeeEE-EEEEcCCch------------------------------hHH---HHHHHHHHHHHhc
Q 035699 474 FGSAPIFKIPRR----RYHVE-LFYTKAPEA------------------------------DYI---EAAIVTALQIHVN 515 (633)
Q Consensus 474 f~~~pii~i~gr----~~pv~-~~y~~~~~~------------------------------~yl---~~~v~~l~~i~~~ 515 (633)
-++.++..|.+. .|.-. ....+.-.. .+. ..-...+..-+
T Consensus 202 Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~~L-- 279 (824)
T PF02399_consen 202 RPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLARL-- 279 (824)
T ss_pred CCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHHHH--
Confidence 344444333211 11100 000000000 000 00011111111
Q ss_pred CCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCC
Q 035699 516 EPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDG 595 (633)
Q Consensus 516 ~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~ 595 (633)
..+.+|-||.+|....+.+++..... .-.|..+.|.-+.. .+ +. =+...||+=|++...|++++.
T Consensus 280 ~~gknIcvfsSt~~~~~~v~~~~~~~---------~~~Vl~l~s~~~~~---dv-~~--W~~~~VviYT~~itvG~Sf~~ 344 (824)
T PF02399_consen 280 NAGKNICVFSSTVSFAEIVARFCARF---------TKKVLVLNSTDKLE---DV-ES--WKKYDVVIYTPVITVGLSFEE 344 (824)
T ss_pred hCCCcEEEEeChHHHHHHHHHHHHhc---------CCeEEEEcCCCCcc---cc-cc--ccceeEEEEeceEEEEeccch
Confidence 22457889999999988888887764 45677778876665 22 11 345789999999999999986
Q ss_pred ccE
Q 035699 596 IKY 598 (633)
Q Consensus 596 V~~ 598 (633)
..+
T Consensus 345 ~HF 347 (824)
T PF02399_consen 345 KHF 347 (824)
T ss_pred hhc
Confidence 653
No 145
>PF13245 AAA_19: Part of AAA domain
Probab=97.98 E-value=1.5e-05 Score=67.11 Aligned_cols=57 Identities=25% Similarity=0.328 Sum_probs=42.7
Q ss_pred HHHHHHcCCeEEEeccCCChhhchHHHHHHHhcc---ccCCeeeecchhHHHHHHHHHHH
Q 035699 338 LLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGY---TKQGKIGCTQLRRVAAMSVAARV 394 (633)
Q Consensus 338 il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~---~~~gkilitqPrR~aA~qva~rv 394 (633)
|..++.++..++|.|++|||||+.+...+..... ..+.+|+|+.|++.++..+.+++
T Consensus 3 v~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 3 VRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 3346666777888999999999776665544321 11348999999999999998887
No 146
>PRK14873 primosome assembly protein PriA; Provisional
Probab=97.93 E-value=6.7e-05 Score=87.32 Aligned_cols=115 Identities=10% Similarity=0.032 Sum_probs=76.8
Q ss_pred eccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhC-CcccceEee---eeec---ccccCCCCcEE
Q 035699 351 VGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMG-VKLGHEVGY---SIRF---EDCTSDKTVLK 423 (633)
Q Consensus 351 ~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g-~~vg~~VGy---~ir~---e~~~s~~t~Ii 423 (633)
.+.+|||||..+...+... +..++.++++.|.-.++-|+..++...+| ..+....+. .-+. ....+....|+
T Consensus 166 ~~~~GSGKTevyl~~i~~~-l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IV 244 (665)
T PRK14873 166 QALPGEDWARRLAAAAAAT-LRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVV 244 (665)
T ss_pred hcCCCCcHHHHHHHHHHHH-HHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEE
Confidence 3446999999888777655 44455899999999999999999999887 443211110 0011 11123457899
Q ss_pred EeCchHHHHHHhcCCCCCCceeee--------------------eecccC---CCccEEEeecccCHHhHhh
Q 035699 424 YMTDGMLLREIVLEPSLESYSVLI--------------------DLINYR---PDLKLLISSATLDAENFSD 472 (633)
Q Consensus 424 v~TpGrLL~~l~~~~~L~~~s~vI--------------------di~~~r---pdlklil~SAT~~~~~~s~ 472 (633)
|||-.-++- -+.++..|| |++..| .+..+|+.|||...+.+..
T Consensus 245 iGtRSAvFa------P~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~ 310 (665)
T PRK14873 245 VGTRSAVFA------PVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQAL 310 (665)
T ss_pred EEcceeEEe------ccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHH
Confidence 999876653 266777777 222222 3568999999998887654
No 147
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=97.91 E-value=0.00019 Score=85.52 Aligned_cols=234 Identities=15% Similarity=0.083 Sum_probs=137.0
Q ss_pred HcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccceEeeeeecccc----cCC
Q 035699 343 SEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDC----TSD 418 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~VGy~ir~e~~----~s~ 418 (633)
..+++|+|.+|+|||||...-..++. -...++++.+.|..+.|...+.-....++.-.|..+- -.+++.. .-.
T Consensus 1157 ~~nd~v~vga~~gsgkt~~ae~a~l~--~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~-~l~ge~s~~lkl~~ 1233 (1674)
T KOG0951|consen 1157 NTNDNVLVGAPNGSGKTACAELALLR--PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIV-KLTGETSLDLKLLQ 1233 (1674)
T ss_pred cccceEEEecCCCCchhHHHHHHhcC--CccceEEEEecchHHHHHHHHHHHHHhhccccCceEE-ecCCccccchHHhh
Confidence 35788999999999999765555543 2233489999999888776666555555433443321 1122221 135
Q ss_pred CCcEEEeCchHHHHHHhcCCCCCCceeee-eecc----------------------cCCCccEEEeeccc-CHHhHhhhh
Q 035699 419 KTVLKYMTDGMLLREIVLEPSLESYSVLI-DLIN----------------------YRPDLKLLISSATL-DAENFSDYF 474 (633)
Q Consensus 419 ~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-di~~----------------------~rpdlklil~SAT~-~~~~~s~~f 474 (633)
+.+|+++||...--. + ..+.++..| |.+| +-..++++.+|-.+ |+..+ -++
T Consensus 1234 ~~~vii~tpe~~d~l-q---~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~k~ir~v~ls~~lana~d~-ig~ 1308 (1674)
T KOG0951|consen 1234 KGQVIISTPEQWDLL-Q---SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLEKKIRVVALSSSLANARDL-IGA 1308 (1674)
T ss_pred hcceEEechhHHHHH-h---hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHHhheeEEEeehhhccchhh-ccc
Confidence 689999999985432 2 334444444 2211 12356677666655 66555 344
Q ss_pred CCCCEEEeCC--eeeeEEEEEEcCCchhHHH-------HHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhccc
Q 035699 475 GSAPIFKIPR--RRYHVELFYTKAPEADYIE-------AAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGL 545 (633)
Q Consensus 475 ~~~pii~i~g--r~~pv~~~y~~~~~~~yl~-------~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l 545 (633)
...-+|+.+. |..|.+++........|.. -.+..+.+.. ..+.+.+||+|+++.+..++..|...+...
T Consensus 1309 s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a--~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~ 1386 (1674)
T KOG0951|consen 1309 SSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHA--GNRKPAIVFLPTRKHARLVAVDLVTFSHAD 1386 (1674)
T ss_pred cccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHh--cCCCCeEEEeccchhhhhhhhccchhhccC
Confidence 4555666543 4566666655433222211 1122222222 235789999999999988877664432110
Q ss_pred ----------C---CCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCc
Q 035699 546 ----------G---TKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNI 586 (633)
Q Consensus 546 ----------~---~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdI 586 (633)
+ .....+....=|-+|+...+..+-.-|..|...|+|..-=
T Consensus 1387 ~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~ 1440 (1674)
T KOG0951|consen 1387 EPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD 1440 (1674)
T ss_pred cHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc
Confidence 0 0001222222288999999998988999999998887543
No 148
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.82 E-value=0.00021 Score=77.61 Aligned_cols=166 Identities=25% Similarity=0.243 Sum_probs=88.9
Q ss_pred CCeEEEeccCCChhhchHHHHHHHhccc-cCC--eeeecchhHHHHHHHHHHHHHHhCCcccceEeeeeeccc-c---cC
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLYEAGYT-KQG--KIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFED-C---TS 417 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Lle~~~~-~~g--kilitqPrR~aA~qva~rva~e~g~~vg~~VGy~ir~e~-~---~s 417 (633)
+.+++++||||.||||.+....+...+. +.. .++-|-..|+.|....+..|+.||+++- |.++...-. - ..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~--vv~~~~el~~ai~~l~ 280 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE--VVYSPKELAEAIEALR 280 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE--EecCHHHHHHHHHHhh
Confidence 8899999999999999988776655422 222 4455778999998888999999999873 333221110 0 01
Q ss_pred CCCcEEEeCchHHHHHHhcCCCCCCceeeeeecccCCCccEEEeecccCHHhHhhhhCCCCEEEeCCeeeeEEEEEEcCC
Q 035699 418 DKTVLKYMTDGMLLREIVLEPSLESYSVLIDLINYRPDLKLLISSATLDAENFSDYFGSAPIFKIPRRRYHVELFYTKAP 497 (633)
Q Consensus 418 ~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vIdi~~~rpdlklil~SAT~~~~~~s~~f~~~pii~i~gr~~pv~~~y~~~~ 497 (633)
..-.|+|=|.||=-.--. .+..+..+++.. .+..-.+.+|||...+.+...+..-..+.+. .+.+++..
T Consensus 281 ~~d~ILVDTaGrs~~D~~---~i~el~~~~~~~--~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~------~~I~TKlD 349 (407)
T COG1419 281 DCDVILVDTAGRSQYDKE---KIEELKELIDVS--HSIEVYLVLSATTKYEDLKEIIKQFSLFPID------GLIFTKLD 349 (407)
T ss_pred cCCEEEEeCCCCCccCHH---HHHHHHHHHhcc--ccceEEEEEecCcchHHHHHHHHHhccCCcc------eeEEEccc
Confidence 223566777774210000 011111111111 2223467789999665555443222222121 24456666
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCEEEEcCcH
Q 035699 498 EADYIEAAIVTALQIHVNEPIGDILVFLTGQ 528 (633)
Q Consensus 498 ~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~ 528 (633)
+...+...+..+..- .-++.-|.+|+
T Consensus 350 ET~s~G~~~s~~~e~-----~~PV~YvT~GQ 375 (407)
T COG1419 350 ETTSLGNLFSLMYET-----RLPVSYVTNGQ 375 (407)
T ss_pred ccCchhHHHHHHHHh-----CCCeEEEeCCC
Confidence 655555444444321 23455555554
No 149
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.66 E-value=0.0025 Score=70.64 Aligned_cols=185 Identities=17% Similarity=0.120 Sum_probs=122.0
Q ss_pred CCcEEEeCchHHHHHHhc------CC-CCCCceeee-------------------eecccCCC-----------------
Q 035699 419 KTVLKYMTDGMLLREIVL------EP-SLESYSVLI-------------------DLINYRPD----------------- 455 (633)
Q Consensus 419 ~t~Iiv~TpGrLL~~l~~------~~-~L~~~s~vI-------------------di~~~rpd----------------- 455 (633)
..+||||+|==|-..+.. +- .|+++.++| +-++..|.
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ldg 210 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLDG 210 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcC
Confidence 578999999766666553 11 488888777 11222221
Q ss_pred -----ccEEEeecccCHHhH---hhhhCC-CCEEE----------eCCeeeeEEEEEEcCCchhHH-------HHHHHHH
Q 035699 456 -----LKLLISSATLDAENF---SDYFGS-APIFK----------IPRRRYHVELFYTKAPEADYI-------EAAIVTA 509 (633)
Q Consensus 456 -----lklil~SAT~~~~~~---s~~f~~-~pii~----------i~gr~~pv~~~y~~~~~~~yl-------~~~v~~l 509 (633)
.|+|++|+..+++.. ...+.| +-.+. +..-..++.+.+..-+..+.. .--...+
T Consensus 211 ~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~i 290 (442)
T PF06862_consen 211 QAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKI 290 (442)
T ss_pred cchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHH
Confidence 389999999876543 332222 11111 111123455555542221111 1112233
Q ss_pred HHHHh-cCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccc
Q 035699 510 LQIHV-NEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAE 588 (633)
Q Consensus 510 ~~i~~-~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAe 588 (633)
+-.+. ....+.+|||+|+-=+--.+...|++. ++.++.+|--.++.+-.++-..|-.|..+|||-|-=+=
T Consensus 291 LP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~---------~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~H 361 (442)
T PF06862_consen 291 LPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKE---------NISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFH 361 (442)
T ss_pred HHHhhhccCCCcEEEEecchhhhHHHHHHHHhc---------CCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHh
Confidence 33333 445688999999999999999999863 78888888888888878888889999999999997553
Q ss_pred --cCCCCCCccEEEeCCCCccccccC
Q 035699 589 --TSLTIDGIKYVIDPGFAKVKSYNP 612 (633)
Q Consensus 589 --rGLdIp~V~~VID~G~~k~~~yd~ 612 (633)
+=..|-||..||=+|+|..+.|-+
T Consensus 362 FfrRy~irGi~~viFY~~P~~p~fY~ 387 (442)
T PF06862_consen 362 FFRRYRIRGIRHVIFYGPPENPQFYS 387 (442)
T ss_pred hhhhceecCCcEEEEECCCCChhHHH
Confidence 556899999999999999886543
No 150
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.52 E-value=0.00021 Score=70.88 Aligned_cols=65 Identities=20% Similarity=0.228 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHcCCe-EEEeccCCChhhchHHHHHHHh-------ccccCCeeeecchhHHHHHHHHHHHHH
Q 035699 332 YPFREELLQAVSEYPV-LVIVGETGSGKTTQIPQYLYEA-------GYTKQGKIGCTQLRRVAAMSVAARVSQ 396 (633)
Q Consensus 332 ~~~q~~il~al~~~~~-vIi~a~TGSGKTt~lp~~Lle~-------~~~~~gkilitqPrR~aA~qva~rva~ 396 (633)
.+.|...+..+.+... .+|.||+|||||+.+...+... ....+++|+++.|+-.++-.+..++.+
T Consensus 3 n~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 3 NESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 3457777788888776 9999999999998877665554 133445999999999999999988876
No 151
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.32 E-value=0.00018 Score=78.63 Aligned_cols=153 Identities=22% Similarity=0.233 Sum_probs=83.1
Q ss_pred cCCeEEEeccCCChhhchHHHHHHHhccc---cCC--eeeecchhHHHHHHHHHHHHHHhCCcccceEeeeee-cc---c
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYLYEAGYT---KQG--KIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIR-FE---D 414 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~Lle~~~~---~~g--kilitqPrR~aA~qva~rva~e~g~~vg~~VGy~ir-~e---~ 414 (633)
...+++++|+||+||||.+.......... .+. .++.+-|.|.+|......+++.+|+++. +++... .. .
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~--~~~~~~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK--AIESFKDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE--eeCcHHHHHHHHH
Confidence 34688999999999999877665432221 222 3455778899888778888888888752 322110 00 1
Q ss_pred ccCCCCcEEEeCchHHHHHHhcCCCCCCceeeeeecccCCC-ccEEEeecccCHHhHhhhhCCCCEEEeCCeeeeEEEEE
Q 035699 415 CTSDKTVLKYMTDGMLLREIVLEPSLESYSVLIDLINYRPD-LKLLISSATLDAENFSDYFGSAPIFKIPRRRYHVELFY 493 (633)
Q Consensus 415 ~~s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vIdi~~~rpd-lklil~SAT~~~~~~s~~f~~~pii~i~gr~~pv~~~y 493 (633)
.....-.|+|=|+|++..... .+..+.-+++.. .++ -.++++|||.....+.+.|.....+. +-.+.+
T Consensus 251 ~~~~~DlVLIDTaGr~~~~~~---~l~el~~~l~~~--~~~~e~~LVlsat~~~~~~~~~~~~~~~~~------~~~~I~ 319 (388)
T PRK12723 251 QSKDFDLVLVDTIGKSPKDFM---KLAEMKELLNAC--GRDAEFHLAVSSTTKTSDVKEIFHQFSPFS------YKTVIF 319 (388)
T ss_pred HhCCCCEEEEcCCCCCccCHH---HHHHHHHHHHhc--CCCCeEEEEEcCCCCHHHHHHHHHHhcCCC------CCEEEE
Confidence 112334577899998752110 111221222211 233 35677899997655554442211111 123445
Q ss_pred EcCCchhHHHHHHHHH
Q 035699 494 TKAPEADYIEAAIVTA 509 (633)
Q Consensus 494 ~~~~~~~yl~~~v~~l 509 (633)
++..+......++..+
T Consensus 320 TKlDet~~~G~~l~~~ 335 (388)
T PRK12723 320 TKLDETTCVGNLISLI 335 (388)
T ss_pred EeccCCCcchHHHHHH
Confidence 5555555444444444
No 152
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.30 E-value=0.0004 Score=72.45 Aligned_cols=66 Identities=20% Similarity=0.243 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHcCCeEEEeccCCChhhchHHHH---HHHhccccCCeeeecchhHHHHHHHHHHHHHHhC
Q 035699 332 YPFREELLQAVSEYPVLVIVGETGSGKTTQIPQY---LYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMG 399 (633)
Q Consensus 332 ~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~---Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g 399 (633)
.+-|..++.. ....++|.|..|||||+.+..- ++..+.....+|+|+.+|+.+|..+..|+...++
T Consensus 2 ~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 2 TDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp -HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcC
Confidence 3557777777 4556888899999999987653 3333222233899999999999999999988664
No 153
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.24 E-value=0.00064 Score=71.70 Aligned_cols=61 Identities=16% Similarity=0.103 Sum_probs=44.0
Q ss_pred hHHHHH----HHHHHHcCCeEEEeccCCChhhchHHHHHHHhccc-cC----CeeeecchhHHHHHHHHH
Q 035699 332 YPFREE----LLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYT-KQ----GKIGCTQLRRVAAMSVAA 392 (633)
Q Consensus 332 ~~~q~~----il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~-~~----gkilitqPrR~aA~qva~ 392 (633)
++.|.+ +..++.++..+++.||||+|||.++..+.+..... .. .+++++.+|..+..++..
T Consensus 10 r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~ 79 (289)
T smart00489 10 YPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLE 79 (289)
T ss_pred CHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHH
Confidence 666666 77888889999999999999998877665432111 11 278888888877555543
No 154
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.24 E-value=0.00064 Score=71.70 Aligned_cols=61 Identities=16% Similarity=0.103 Sum_probs=44.0
Q ss_pred hHHHHH----HHHHHHcCCeEEEeccCCChhhchHHHHHHHhccc-cC----CeeeecchhHHHHHHHHH
Q 035699 332 YPFREE----LLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYT-KQ----GKIGCTQLRRVAAMSVAA 392 (633)
Q Consensus 332 ~~~q~~----il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~-~~----gkilitqPrR~aA~qva~ 392 (633)
++.|.+ +..++.++..+++.||||+|||.++..+.+..... .. .+++++.+|..+..++..
T Consensus 10 r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~ 79 (289)
T smart00488 10 YPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLE 79 (289)
T ss_pred CHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHH
Confidence 666666 77888889999999999999998877665432111 11 278888888877555543
No 155
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.14 E-value=0.00039 Score=69.18 Aligned_cols=151 Identities=23% Similarity=0.261 Sum_probs=83.0
Q ss_pred CeEEEeccCCChhhchHHHHHHHhccccCC-eeeecchhHHHHHHHHHHHHHHhCCcccce-Eee---eee---cccccC
Q 035699 346 PVLVIVGETGSGKTTQIPQYLYEAGYTKQG-KIGCTQLRRVAAMSVAARVSQEMGVKLGHE-VGY---SIR---FEDCTS 417 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~Lle~~~~~~g-kilitqPrR~aA~qva~rva~e~g~~vg~~-VGy---~ir---~e~~~s 417 (633)
++++++||||+||||.+..........+.. .++++-+.|..|.+..+.+++.+|+++... ..- .+- .+....
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 368899999999999988776655444222 567788999999999999999999764210 000 000 000011
Q ss_pred CC-CcEEEeCchHHHHHHhcCCCCCCceeeeeecccCCCccEEEeecccCHHh---HhhhhCCCCEEEeCCeeeeEEEEE
Q 035699 418 DK-TVLKYMTDGMLLREIVLEPSLESYSVLIDLINYRPDLKLLISSATLDAEN---FSDYFGSAPIFKIPRRRYHVELFY 493 (633)
Q Consensus 418 ~~-t~Iiv~TpGrLL~~l~~~~~L~~~s~vIdi~~~rpdlklil~SAT~~~~~---~s~~f~~~pii~i~gr~~pv~~~y 493 (633)
++ -.|+|=|||+....-. .+..+.-+++.+ .|+--++++|||...+. +..|+...+ +-.+.+
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~---~~~el~~~~~~~--~~~~~~LVlsa~~~~~~~~~~~~~~~~~~---------~~~lIl 147 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEE---LLEELKKLLEAL--NPDEVHLVLSATMGQEDLEQALAFYEAFG---------IDGLIL 147 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHH---HHHHHHHHHHHH--SSSEEEEEEEGGGGGHHHHHHHHHHHHSS---------TCEEEE
T ss_pred cCCCEEEEecCCcchhhHH---HHHHHHHHhhhc--CCccceEEEecccChHHHHHHHHHhhccc---------CceEEE
Confidence 22 3577889986542110 011111112222 35556788899995433 333432111 123556
Q ss_pred EcCCchhHHHHHHHHHH
Q 035699 494 TKAPEADYIEAAIVTAL 510 (633)
Q Consensus 494 ~~~~~~~yl~~~v~~l~ 510 (633)
++..+...+...+..+.
T Consensus 148 TKlDet~~~G~~l~~~~ 164 (196)
T PF00448_consen 148 TKLDETARLGALLSLAY 164 (196)
T ss_dssp ESTTSSSTTHHHHHHHH
T ss_pred EeecCCCCcccceeHHH
Confidence 66666655555444443
No 156
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.07 E-value=0.00034 Score=76.87 Aligned_cols=127 Identities=24% Similarity=0.254 Sum_probs=71.0
Q ss_pred CCeEEEeccCCChhhchHHHHHHHhccccCCee--eecchhHHHHHHHHHHHHHHhCCcccceEeeeee-ccc-ccCCC-
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKI--GCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIR-FED-CTSDK- 419 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gki--litqPrR~aA~qva~rva~e~g~~vg~~VGy~ir-~e~-~~s~~- 419 (633)
+.+++++|+|||||||++..+........+.+| +-+-|-|.+|.....+.+..+|+.+.. ...+. ... ....+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~--~~~~~~l~~~l~~~~~ 300 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYP--VKDIKKFKETLARDGS 300 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeee--hHHHHHHHHHHHhCCC
Confidence 467889999999999998888765433333333 446788899988888888888875421 00000 000 01123
Q ss_pred CcEEEeCchHHHHHHhcCCCCCCceeeeeecccC-CCccEEEeecccCH---HhHhhhhCC
Q 035699 420 TVLKYMTDGMLLREIVLEPSLESYSVLIDLINYR-PDLKLLISSATLDA---ENFSDYFGS 476 (633)
Q Consensus 420 t~Iiv~TpGrLL~~l~~~~~L~~~s~vIdi~~~r-pdlklil~SAT~~~---~~~s~~f~~ 476 (633)
-.|+|=|||+.-+-.. .+..+.-+.+..... |.-.++++|||... ..+..+|..
T Consensus 301 D~VLIDTaGr~~rd~~---~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~ 358 (432)
T PRK12724 301 ELILIDTAGYSHRNLE---QLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYES 358 (432)
T ss_pred CEEEEeCCCCCccCHH---HHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcC
Confidence 3488889997632110 011111111111111 33457788999954 444455543
No 157
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.06 E-value=0.0025 Score=69.29 Aligned_cols=165 Identities=20% Similarity=0.199 Sum_probs=85.0
Q ss_pred HccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCC--eeeecchhHHHHHHHHHHHHHHhCCccc
Q 035699 326 RKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQG--KIGCTQLRRVAAMSVAARVSQEMGVKLG 403 (633)
Q Consensus 326 r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~g--kilitqPrR~aA~qva~rva~e~g~~vg 403 (633)
+..+|+.+.- .+..+.+++++||||+||||.+....... ...+. .++.+-|-|.+|.......+..+|+++-
T Consensus 192 ~~~l~~~~~~-----~~~~~~ii~lvGptGvGKTTt~akLA~~l-~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~ 265 (407)
T PRK12726 192 SGKLAVEDSF-----DLSNHRIISLIGQTGVGKTTTLVKLGWQL-LKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI 265 (407)
T ss_pred cCcEeeCCCc-----eecCCeEEEEECCCCCCHHHHHHHHHHHH-HHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEE
Confidence 5566664321 23567889999999999999876655432 11222 3455678888877766767787776542
Q ss_pred ceEeeeee-ccc----cc--CCCCcEEEeCchHHHHHHhcCCCCCCceeeeeecccCCCccEEEeecccCHHhHhhhhCC
Q 035699 404 HEVGYSIR-FED----CT--SDKTVLKYMTDGMLLREIVLEPSLESYSVLIDLINYRPDLKLLISSATLDAENFSDYFGS 476 (633)
Q Consensus 404 ~~VGy~ir-~e~----~~--s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vIdi~~~rpdlklil~SAT~~~~~~s~~f~~ 476 (633)
++.... ... .. ...-.|+|=|||+.-.. ...+..+..+.+.+ .|+.-++.+|||.....+..++..
T Consensus 266 --~~~dp~dL~~al~~l~~~~~~D~VLIDTAGr~~~d---~~~l~EL~~l~~~~--~p~~~~LVLsag~~~~d~~~i~~~ 338 (407)
T PRK12726 266 --VATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLA---EESVSEISAYTDVV--HPDLTCFTFSSGMKSADVMTILPK 338 (407)
T ss_pred --ecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCccC---HHHHHHHHHHhhcc--CCceEEEECCCcccHHHHHHHHHh
Confidence 221100 000 00 12245889999984210 00111111111211 355556778998865444443321
Q ss_pred CCEEEeCCeeeeEEEEEEcCCchhHHHHHHHHH
Q 035699 477 APIFKIPRRRYHVELFYTKAPEADYIEAAIVTA 509 (633)
Q Consensus 477 ~pii~i~gr~~pv~~~y~~~~~~~yl~~~v~~l 509 (633)
...+.+ -.+.+++..+......++..+
T Consensus 339 f~~l~i------~glI~TKLDET~~~G~~Lsv~ 365 (407)
T PRK12726 339 LAEIPI------DGFIITKMDETTRIGDLYTVM 365 (407)
T ss_pred cCcCCC------CEEEEEcccCCCCccHHHHHH
Confidence 111111 124456655555444444444
No 158
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.03 E-value=0.0026 Score=69.44 Aligned_cols=123 Identities=17% Similarity=0.209 Sum_probs=64.7
Q ss_pred CCeEEEeccCCChhhchHHHHHHHhccccCCee--eecchhHHHHHHHHHHHHHHhCCcccceEeeeee-ccccc---C-
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKI--GCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIR-FEDCT---S- 417 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gki--litqPrR~aA~qva~rva~e~g~~vg~~VGy~ir-~e~~~---s- 417 (633)
..++.++|+||+||||.+....... ...+.++ +-+-|-|.+|.+.....+..+|+++- +.+... ..+.. .
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L-~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~--v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQF-HGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVI--AVRDEAAMTRALTYFKE 317 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHH-HHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEE--ecCCHHHHHHHHHHHHh
Confidence 4678899999999999876665432 1222233 34567887777666667777776642 221100 00000 1
Q ss_pred --CCCcEEEeCchHHHHHHhcCCCCCCceeeeeecccCCCccEEEeecccCH---HhHhhhhC
Q 035699 418 --DKTVLKYMTDGMLLREIVLEPSLESYSVLIDLINYRPDLKLLISSATLDA---ENFSDYFG 475 (633)
Q Consensus 418 --~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vIdi~~~rpdlklil~SAT~~~---~~~s~~f~ 475 (633)
..-.|+|=|+|+..+... .+..+.-++. ...|+..++.+|||... ..+...|.
T Consensus 318 ~~~~DvVLIDTaGRs~kd~~---lm~EL~~~lk--~~~PdevlLVLsATtk~~d~~~i~~~F~ 375 (436)
T PRK11889 318 EARVDYILIDTAGKNYRASE---TVEEMIETMG--QVEPDYICLTLSASMKSKDMIEIITNFK 375 (436)
T ss_pred ccCCCEEEEeCccccCcCHH---HHHHHHHHHh--hcCCCeEEEEECCccChHHHHHHHHHhc
Confidence 123477888888542110 0111111111 12355556778998743 33444444
No 159
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.03 E-value=0.02 Score=63.64 Aligned_cols=124 Identities=24% Similarity=0.281 Sum_probs=66.7
Q ss_pred HHcCCeEEEeccCCChhhchHHHHHHHhc-cccCCee--eecchhHHHHHHHHHHHHHHhCCcccceEeeeee-cc---c
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQYLYEAG-YTKQGKI--GCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIR-FE---D 414 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~Lle~~-~~~~gki--litqPrR~aA~qva~rva~e~g~~vg~~VGy~ir-~e---~ 414 (633)
+..+.+++++||||+||||.+..+..... ...+.+| +-+-|-|.+|.......+..+|+++- +.+... +. .
T Consensus 218 ~~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~--~~~~~~~l~~~l~ 295 (424)
T PRK05703 218 LKQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE--VVYDPKELAKALE 295 (424)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE--ccCCHHhHHHHHH
Confidence 34567899999999999998776655432 1222233 34677788777766777777776542 221110 00 0
Q ss_pred ccCCCCcEEEeCchHHHHHHhcCCCCCCceeeeeecccCCCccEEEeecccCHHhHh
Q 035699 415 CTSDKTVLKYMTDGMLLREIVLEPSLESYSVLIDLINYRPDLKLLISSATLDAENFS 471 (633)
Q Consensus 415 ~~s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vIdi~~~rpdlklil~SAT~~~~~~s 471 (633)
.....-.|+|=|||+.-.... .+..+..+++. ...|...++++|||.....+.
T Consensus 296 ~~~~~DlVlIDt~G~~~~d~~---~~~~L~~ll~~-~~~~~~~~LVl~a~~~~~~l~ 348 (424)
T PRK05703 296 QLRDCDVILIDTAGRSQRDKR---LIEELKALIEF-SGEPIDVYLVLSATTKYEDLK 348 (424)
T ss_pred HhCCCCEEEEeCCCCCCCCHH---HHHHHHHHHhc-cCCCCeEEEEEECCCCHHHHH
Confidence 112234578889987321000 01111111121 113444577889998654433
No 160
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=96.96 E-value=0.012 Score=68.11 Aligned_cols=88 Identities=20% Similarity=0.328 Sum_probs=74.1
Q ss_pred CCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCC--eeEEEeCCccccCCCCCCc
Q 035699 519 GDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGA--RKVVLATNIAETSLTIDGI 596 (633)
Q Consensus 519 g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~--rkVLvATdIAerGLdIp~V 596 (633)
..+|+|-.++..++-+...|... +++.++.+-|.-|...|..+...|..+. .-.|++|-|-..|++.-+.
T Consensus 547 ~rvllFsqs~~mLdilE~fL~~~--------~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgA 618 (923)
T KOG0387|consen 547 DRVLLFSQSRQMLDILESFLRRA--------KGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGA 618 (923)
T ss_pred CEEEEehhHHHHHHHHHHHHHhc--------CCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccC
Confidence 46999999999999888888742 4899999999999999999999998664 4568899999999999999
Q ss_pred cEEEeCCCCccccccCCCCcee
Q 035699 597 KYVIDPGFAKVKSYNPKTGMES 618 (633)
Q Consensus 597 ~~VID~G~~k~~~yd~~~g~~~ 618 (633)
+-||=| .+-|||+|.+..
T Consensus 619 nRVIIf----DPdWNPStD~QA 636 (923)
T KOG0387|consen 619 NRVIIF----DPDWNPSTDNQA 636 (923)
T ss_pred ceEEEE----CCCCCCccchHH
Confidence 888744 456888887754
No 161
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=96.92 E-value=0.0014 Score=73.80 Aligned_cols=62 Identities=16% Similarity=0.276 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHcC-CeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHH
Q 035699 333 PFREELLQAVSEY-PVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVS 395 (633)
Q Consensus 333 ~~q~~il~al~~~-~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva 395 (633)
+.|.+++.+..+. ...+|.||+|+|||+.+...+... ..++.+|+|+.|+.+++-.+-.|+.
T Consensus 188 ~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~ql-vk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 188 SSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQL-VKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred HHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHH-HHcCCeEEEEcCchHHHHHHHHHhc
Confidence 3456666666666 667889999999999888777765 4455699999999999988888754
No 162
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.92 E-value=0.0014 Score=72.43 Aligned_cols=152 Identities=21% Similarity=0.178 Sum_probs=83.5
Q ss_pred HHcCCeEEEeccCCChhhchHHHHHHHhcccc---CCeeeecchhHHHHHHHHHHHHHHhCCcccceEeeeeec----cc
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQYLYEAGYTK---QGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRF----ED 414 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~---~gkilitqPrR~aA~qva~rva~e~g~~vg~~VGy~ir~----e~ 414 (633)
+..+.++.++|+||+||||.+........... ...++.+-+.|..+.+....++..+|+++. +.+.... ..
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~--~v~~~~dl~~al~ 265 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR--SIKDIADLQLMLH 265 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCcee--cCCCHHHHHHHHH
Confidence 35678899999999999998876654321111 124556677788888888888888887652 2111100 01
Q ss_pred ccCCCCcEEEeCchHHHHHHhcCCCCCCceeeeeeccc-CCCccEEEeecccCHHh---HhhhhCCCCEEEeCCeeeeEE
Q 035699 415 CTSDKTVLKYMTDGMLLREIVLEPSLESYSVLIDLINY-RPDLKLLISSATLDAEN---FSDYFGSAPIFKIPRRRYHVE 490 (633)
Q Consensus 415 ~~s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vIdi~~~-rpdlklil~SAT~~~~~---~s~~f~~~pii~i~gr~~pv~ 490 (633)
.....-.|+|-|+||.-+.-.. ...+..+ ... .|.-.++++|||...+. +..+|...++ -.
T Consensus 266 ~l~~~d~VLIDTaGrsqrd~~~---~~~l~~l---~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~~~~---------~~ 330 (420)
T PRK14721 266 ELRGKHMVLIDTVGMSQRDQML---AEQIAML---SQCGTQVKHLLLLNATSSGDTLDEVISAYQGHGI---------HG 330 (420)
T ss_pred HhcCCCEEEecCCCCCcchHHH---HHHHHHH---hccCCCceEEEEEcCCCCHHHHHHHHHHhcCCCC---------CE
Confidence 1234456889999987532110 0111111 111 13334677899985543 3345542221 12
Q ss_pred EEEEcCCchhHHHHHHHHHH
Q 035699 491 LFYTKAPEADYIEAAIVTAL 510 (633)
Q Consensus 491 ~~y~~~~~~~yl~~~v~~l~ 510 (633)
+.+++..+...+..++..+.
T Consensus 331 ~I~TKlDEt~~~G~~l~~~~ 350 (420)
T PRK14721 331 CIITKVDEAASLGIALDAVI 350 (420)
T ss_pred EEEEeeeCCCCccHHHHHHH
Confidence 45555555555544444443
No 163
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=96.91 E-value=0.036 Score=61.32 Aligned_cols=82 Identities=21% Similarity=0.238 Sum_probs=67.6
Q ss_pred CCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCC--CeeEEEeCCccccCCCC
Q 035699 516 EPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEG--ARKVVLATNIAETSLTI 593 (633)
Q Consensus 516 ~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g--~rkVLvATdIAerGLdI 593 (633)
.++.+.|||+..+.-.+.+...+.+. ++..+-|-|..|+..|...-+.|... .+--||+-..+..|||+
T Consensus 490 ~~~~KflVFaHH~~vLd~Iq~~~~~r---------~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~ 560 (689)
T KOG1000|consen 490 APPRKFLVFAHHQIVLDTIQVEVNKR---------KVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTL 560 (689)
T ss_pred CCCceEEEEehhHHHHHHHHHHHHHc---------CCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceee
Confidence 44578999999999999999999885 78889999999999999888877644 34456777889999999
Q ss_pred CCccEEEeCCCCc
Q 035699 594 DGIKYVIDPGFAK 606 (633)
Q Consensus 594 p~V~~VID~G~~k 606 (633)
.....||-.-++.
T Consensus 561 tAa~~VVFaEL~w 573 (689)
T KOG1000|consen 561 TAASVVVFAELHW 573 (689)
T ss_pred eccceEEEEEecC
Confidence 9999998544443
No 164
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.90 E-value=0.0035 Score=68.31 Aligned_cols=161 Identities=20% Similarity=0.237 Sum_probs=83.3
Q ss_pred HHHcCCeEEEeccCCChhhchHHHHHHHhccccC-Cee--eecchhHHHHHHHHHHHHHHhCCcccce-Eeeeeec-ccc
Q 035699 341 AVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQ-GKI--GCTQLRRVAAMSVAARVSQEMGVKLGHE-VGYSIRF-EDC 415 (633)
Q Consensus 341 al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~-gki--litqPrR~aA~qva~rva~e~g~~vg~~-VGy~ir~-e~~ 415 (633)
.+..+.+++++||||+||||.+...........+ .+| +.+-+-|..|.+....+++.+|+.+... .+..... ...
T Consensus 133 ~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~ 212 (374)
T PRK14722 133 LMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE 212 (374)
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH
Confidence 3556889999999999999987776654322222 233 3344557788887788888888765211 0000000 011
Q ss_pred cCCCCcEEEeCchHHHH--HHhcCCCCCCceeeeeecccCCCccEEEeecccCHHhHh----hhhC--CCCEEEeCCeee
Q 035699 416 TSDKTVLKYMTDGMLLR--EIVLEPSLESYSVLIDLINYRPDLKLLISSATLDAENFS----DYFG--SAPIFKIPRRRY 487 (633)
Q Consensus 416 ~s~~t~Iiv~TpGrLL~--~l~~~~~L~~~s~vIdi~~~rpdlklil~SAT~~~~~~s----~~f~--~~pii~i~gr~~ 487 (633)
....-.|+|=|+|+.-. .+. ..+..+.. ...|.-.++++|||...+.+. .|-. ..|....++
T Consensus 213 l~~~DlVLIDTaG~~~~d~~l~-----e~La~L~~--~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~--- 282 (374)
T PRK14722 213 LRNKHMVLIDTIGMSQRDRTVS-----DQIAMLHG--ADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPD--- 282 (374)
T ss_pred hcCCCEEEEcCCCCCcccHHHH-----HHHHHHhc--cCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCC---
Confidence 12344577889986621 100 00000000 012344578889998543332 2321 112111110
Q ss_pred eEEEEEEcCCchhHHHHHHHHHHH
Q 035699 488 HVELFYTKAPEADYIEAAIVTALQ 511 (633)
Q Consensus 488 pv~~~y~~~~~~~yl~~~v~~l~~ 511 (633)
.-.+.+++..+...+...+..+..
T Consensus 283 ~~~~I~TKlDEt~~~G~~l~~~~~ 306 (374)
T PRK14722 283 LAGCILTKLDEASNLGGVLDTVIR 306 (374)
T ss_pred CCEEEEeccccCCCccHHHHHHHH
Confidence 124566776666655555555443
No 165
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.87 E-value=0.012 Score=69.55 Aligned_cols=138 Identities=17% Similarity=0.276 Sum_probs=88.6
Q ss_pred ccEEEeecccCH-HhHhhhh---C-C----CCEEEeCCeeeeE---EEEEEc----C--CchhHHHHHHHHHHHHHhcCC
Q 035699 456 LKLLISSATLDA-ENFSDYF---G-S----APIFKIPRRRYHV---ELFYTK----A--PEADYIEAAIVTALQIHVNEP 517 (633)
Q Consensus 456 lklil~SAT~~~-~~~s~~f---~-~----~pii~i~gr~~pv---~~~y~~----~--~~~~yl~~~v~~l~~i~~~~~ 517 (633)
..+|++|||+.+ ..|..|. + + ...+.+|.. |+. ...|.+ . ....|.......+..++. .
T Consensus 457 ~~vIltSATL~~~~~f~~~~~~lGL~~~~~~~~~~~~Sp-F~~~~q~~l~vp~~~~~p~~~~~~~~~~~~~i~~l~~--~ 533 (697)
T PRK11747 457 PGAVLTSATLRSLNSFDRFQEQSGLPEKDGDRFLALPSP-FDYPNQGKLVIPKMRAEPDNEEAHTAEMAEFLPELLE--K 533 (697)
T ss_pred CEEEEEeeeCCCCCchHHHHHHcCCCCCCCceEEEcCCC-CCHHHccEEEeCCCCCCCCCcHHHHHHHHHHHHHHHh--c
Confidence 357899999965 3443322 2 1 223444332 321 122322 2 234577777777777776 3
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhC----CCCCCCeeEEEeCCccccCCCC
Q 035699 518 IGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFE----PTPEGARKVVLATNIAETSLTI 593 (633)
Q Consensus 518 ~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~----~f~~g~rkVLvATdIAerGLdI 593 (633)
+|.+|||+|+....+.++..|.... +.. +..+|..+ +..+++ .|..|...||++|.-..-|||+
T Consensus 534 ~gg~LVlFtSy~~l~~v~~~l~~~~--------~~~-ll~Q~~~~---~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~ 601 (697)
T PRK11747 534 HKGSLVLFASRRQMQKVADLLPRDL--------RLM-LLVQGDQP---RQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDL 601 (697)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHhc--------CCc-EEEeCCch---HHHHHHHHHHHhccCCCeEEEEeccccccccC
Confidence 4569999999999999999987531 222 23355433 334443 3445677899999999999999
Q ss_pred CC--ccEEEeCCCCccc
Q 035699 594 DG--IKYVIDPGFAKVK 608 (633)
Q Consensus 594 p~--V~~VID~G~~k~~ 608 (633)
|| ..+||=+|+|..+
T Consensus 602 pGd~l~~vII~kLPF~~ 618 (697)
T PRK11747 602 PGDYLTQVIITKIPFAV 618 (697)
T ss_pred CCCceEEEEEEcCCCCC
Confidence 86 7899888998753
No 166
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.86 E-value=0.0021 Score=74.86 Aligned_cols=65 Identities=15% Similarity=0.230 Sum_probs=49.4
Q ss_pred ChHHHHHHHHHHHcC-CeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHH
Q 035699 331 IYPFREELLQAVSEY-PVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQ 396 (633)
Q Consensus 331 i~~~q~~il~al~~~-~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~ 396 (633)
+...|...+.....+ .+++|.||+|||||+.+...+... ...+.+|+|+.|+..|+.++..++..
T Consensus 158 ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~-~~~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 158 LNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQL-VKRGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHH-HHcCCCEEEEcCcHHHHHHHHHHHHh
Confidence 345555566666554 789999999999998877665543 22334899999999999999998876
No 167
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.73 E-value=0.0022 Score=71.95 Aligned_cols=154 Identities=19% Similarity=0.211 Sum_probs=81.2
Q ss_pred HcCCeEEEeccCCChhhchHHHHHHHhccccCC-ee--eecchhHHHHHHHHHHHHHHhCCcccce-Eeeeeecc-cccC
Q 035699 343 SEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQG-KI--GCTQLRRVAAMSVAARVSQEMGVKLGHE-VGYSIRFE-DCTS 417 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~g-ki--litqPrR~aA~qva~rva~e~g~~vg~~-VGy~ir~e-~~~s 417 (633)
..+.++.++||||+||||.+...........++ +| +.+-+-|..|.+....++..+|+.+... -+...... ....
T Consensus 254 ~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~ 333 (484)
T PRK06995 254 DRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELR 333 (484)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhcc
Confidence 346789999999999999877765433222222 33 4456778888888888888888654210 00000000 0112
Q ss_pred CCCcEEEeCchHHHHHHhcCCCCCCceeeeeecccCCCccEEEeecccCHHhH---hhhhCCCCEEEeCCeeeeEEEEEE
Q 035699 418 DKTVLKYMTDGMLLREIVLEPSLESYSVLIDLINYRPDLKLLISSATLDAENF---SDYFGSAPIFKIPRRRYHVELFYT 494 (633)
Q Consensus 418 ~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vIdi~~~rpdlklil~SAT~~~~~~---s~~f~~~pii~i~gr~~pv~~~y~ 494 (633)
+.-.++|-|+||.-+.-.-...+..+. +.. .|.-.+++++||.....+ ..+|...++ -.+.++
T Consensus 334 d~d~VLIDTaGr~~~d~~~~e~~~~l~---~~~--~p~e~~LVLdAt~~~~~l~~i~~~f~~~~~---------~g~IlT 399 (484)
T PRK06995 334 NKHIVLIDTIGMSQRDRMVSEQIAMLH---GAG--APVKRLLLLNATSHGDTLNEVVQAYRGPGL---------AGCILT 399 (484)
T ss_pred CCCeEEeCCCCcChhhHHHHHHHHHHh---ccC--CCCeeEEEEeCCCcHHHHHHHHHHhccCCC---------CEEEEe
Confidence 345788999997653210000000000 110 143367888999855443 344433221 124456
Q ss_pred cCCchhHHHHHHHHHH
Q 035699 495 KAPEADYIEAAIVTAL 510 (633)
Q Consensus 495 ~~~~~~yl~~~v~~l~ 510 (633)
+..+...+..++..+.
T Consensus 400 KlDet~~~G~~l~i~~ 415 (484)
T PRK06995 400 KLDEAASLGGALDVVI 415 (484)
T ss_pred CCCCcccchHHHHHHH
Confidence 6555554444444443
No 168
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.70 E-value=0.017 Score=68.40 Aligned_cols=169 Identities=12% Similarity=0.124 Sum_probs=98.7
Q ss_pred cEEEeCchHHHHHHhcCCCCCCceeeeeecccCCCccEEEeecccC-HHhHhhhhCC-CCEEEeCCeeee----------
Q 035699 421 VLKYMTDGMLLREIVLEPSLESYSVLIDLINYRPDLKLLISSATLD-AENFSDYFGS-APIFKIPRRRYH---------- 488 (633)
Q Consensus 421 ~Iiv~TpGrLL~~l~~~~~L~~~s~vIdi~~~rpdlklil~SAT~~-~~~~s~~f~~-~pii~i~gr~~p---------- 488 (633)
.+....|+..++.+.. .-..+|++|||+. .+.|...++- .+....++..+|
T Consensus 424 ~~~~l~ps~~~~~i~~-----------------~~~svil~SgTL~p~~~~~~~Lg~~~~~~~~~~~~~~~~~~~~~i~~ 486 (705)
T TIGR00604 424 KFMCLDPSIALKPLFE-----------------RVRSVILASGTLSPLDAFPRNLGFNPVSQDSPTHILKRENLLTLIVT 486 (705)
T ss_pred EEEecChHHHHHHHHH-----------------hcCEEEEecccCCcHHHHHHHhCCCCccceecCcccchHHeEEEEEe
Confidence 3445567777765532 1235899999994 4667765542 222111111111
Q ss_pred -------EEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhh--cccCCCCCceEEEeccC
Q 035699 489 -------VELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRT--RGLGTKIAELIICPIYG 559 (633)
Q Consensus 489 -------v~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~--~~l~~~~~~~~v~~lHg 559 (633)
+...|......+|+......+..+.... +|.+|||+|+-.-.+.+++.+.... ..+.. ...+-+-+ .+
T Consensus 487 ~~~~~~~l~~~~~~r~~~~~~~~l~~~i~~~~~~~-pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~-~k~i~~E~-~~ 563 (705)
T TIGR00604 487 RGSDQVPLSSTFEIRNDPSLVRNLGELLVEFSKII-PDGIVVFFPSYSYLENIVSTWKEMGILENIEK-KKLIFVET-KD 563 (705)
T ss_pred eCCCCCeeeeehhccCCHHHHHHHHHHHHHHhhcC-CCcEEEEccCHHHHHHHHHHHHhcCHHHHHhc-CCCEEEeC-CC
Confidence 1112222222456666666666666554 6999999999999999998887521 00000 01122222 21
Q ss_pred CCCHHHHHHHhCCCC----CCCeeEEEeC--CccccCCCCCC--ccEEEeCCCCccccccC
Q 035699 560 NLPTELQAKIFEPTP----EGARKVVLAT--NIAETSLTIDG--IKYVIDPGFAKVKSYNP 612 (633)
Q Consensus 560 ~l~~~~R~~i~~~f~----~g~rkVLvAT--dIAerGLdIp~--V~~VID~G~~k~~~yd~ 612 (633)
. ..+..+++.|. .|.-.||+|+ ....=|||++| ...||=+|+|..+..+|
T Consensus 564 ~---~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~~~~ 621 (705)
T TIGR00604 564 A---QETSDALERYKQAVSEGRGAVLLSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTESR 621 (705)
T ss_pred c---chHHHHHHHHHHHHhcCCceEEEEecCCcccCccccCCCCCcEEEEEccCCCCCCCH
Confidence 1 34456666663 2445699999 88999999986 67777799998654443
No 169
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=96.57 E-value=0.013 Score=68.94 Aligned_cols=81 Identities=19% Similarity=0.151 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeE
Q 035699 501 YIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKV 580 (633)
Q Consensus 501 yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkV 580 (633)
.+.+.+..+...|.+ +.++||-..+.+..+.+.+.|.+. +++-..|.+.-...+=..+-+....|. |
T Consensus 414 K~~Aiv~~I~~~~~~--gqPvLvgT~sie~SE~ls~~L~~~---------~i~h~VLNAk~h~~EA~Iia~AG~~ga--V 480 (822)
T COG0653 414 KFKAIVEDIKERHEK--GQPVLVGTVSIEKSELLSKLLRKA---------GIPHNVLNAKNHAREAEIIAQAGQPGA--V 480 (822)
T ss_pred HHHHHHHHHHHHHhc--CCCEEEcCcceecchhHHHHHHhc---------CCCceeeccccHHHHHHHHhhcCCCCc--c
Confidence 345556666666643 478999999999999999999874 333334444433444344455555664 6
Q ss_pred EEeCCccccCCCCC
Q 035699 581 VLATNIAETSLTID 594 (633)
Q Consensus 581 LvATdIAerGLdIp 594 (633)
=||||.|.||-||-
T Consensus 481 TiATNMAGRGTDIk 494 (822)
T COG0653 481 TIATNMAGRGTDIK 494 (822)
T ss_pred ccccccccCCcccc
Confidence 79999999999994
No 170
>PRK14974 cell division protein FtsY; Provisional
Probab=96.52 E-value=0.0024 Score=68.72 Aligned_cols=116 Identities=21% Similarity=0.320 Sum_probs=63.3
Q ss_pred CCeEEEeccCCChhhchHHHHHHHhccccCCeeee--cchhHHHHHHHHHHHHHHhCCcccc-eEee---eeecc---cc
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGC--TQLRRVAAMSVAARVSQEMGVKLGH-EVGY---SIRFE---DC 415 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkili--tqPrR~aA~qva~rva~e~g~~vg~-~VGy---~ir~e---~~ 415 (633)
..+++++|++|+||||.+....... ...+.++++ +-+.|..|.......+..+|+++.. ..|- .+-+. ..
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l-~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYL-KKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH-HHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 3578899999999999866554322 112224433 3456777776667788888876521 1110 00001 01
Q ss_pred c-CCCCcEEEeCchHHHHHHhcCCCCCCceeeeeecccCCCccEEEeecccC
Q 035699 416 T-SDKTVLKYMTDGMLLREIVLEPSLESYSVLIDLINYRPDLKLLISSATLD 466 (633)
Q Consensus 416 ~-s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vIdi~~~rpdlklil~SAT~~ 466 (633)
. ...-.|+|=|+|++-.... .+..+..++.. ..|+..++++|||..
T Consensus 219 ~~~~~DvVLIDTaGr~~~~~~---lm~eL~~i~~~--~~pd~~iLVl~a~~g 265 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHTDAN---LMDELKKIVRV--TKPDLVIFVGDALAG 265 (336)
T ss_pred HhCCCCEEEEECCCccCCcHH---HHHHHHHHHHh--hCCceEEEeeccccc
Confidence 1 1223688999998731100 01112222221 247778888899883
No 171
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.47 E-value=0.0097 Score=67.32 Aligned_cols=71 Identities=25% Similarity=0.401 Sum_probs=44.6
Q ss_pred HccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhcccc-CCee--eecchhHHHHHHHHHHHHHHhCCc
Q 035699 326 RKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTK-QGKI--GCTQLRRVAAMSVAARVSQEMGVK 401 (633)
Q Consensus 326 r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~-~gki--litqPrR~aA~qva~rva~e~g~~ 401 (633)
.+.||+... ..+..+.+++++|+||+||||.+........... +.+| +-+-+.|..+.......+..+|+.
T Consensus 336 ~~~l~v~~~-----~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~ 409 (559)
T PRK12727 336 SKRLPVAPV-----DPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIA 409 (559)
T ss_pred HHhcCcCcc-----ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCce
Confidence 556676554 4566789999999999999998665544322222 1233 335567877766555555555543
No 172
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.40 E-value=0.01 Score=69.88 Aligned_cols=120 Identities=23% Similarity=0.222 Sum_probs=67.2
Q ss_pred cCCeEEEeccCCChhhchHHHHHHHhccccCC-eeee--cchhHHHHHHHHHHHHHHhCCcccceEeeeeec----cccc
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYLYEAGYTKQG-KIGC--TQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRF----EDCT 416 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~g-kili--tqPrR~aA~qva~rva~e~g~~vg~~VGy~ir~----e~~~ 416 (633)
.+.++.++||||+||||.+...........++ +|.+ +-+-|..|......++..+|+++- +.+.... ....
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~--~~~~~~~l~~al~~~ 261 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVH--AVKDAADLRFALAAL 261 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcc--ccCCHHHHHHHHHHh
Confidence 46789999999999999877665433223332 4433 456788888777878888887652 2221100 0011
Q ss_pred CCCCcEEEeCchHHHHHHhcCCCCCCceeeeeecccCCCccEEEeecccCHHhH
Q 035699 417 SDKTVLKYMTDGMLLREIVLEPSLESYSVLIDLINYRPDLKLLISSATLDAENF 470 (633)
Q Consensus 417 s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vIdi~~~rpdlklil~SAT~~~~~~ 470 (633)
...-.|+|=|+||.-+.-. ....+..+.+ ...|.-.++++|||...+.|
T Consensus 262 ~~~D~VLIDTAGRs~~d~~---l~eel~~l~~--~~~p~e~~LVLsAt~~~~~l 310 (767)
T PRK14723 262 GDKHLVLIDTVGMSQRDRN---VSEQIAMLCG--VGRPVRRLLLLNAASHGDTL 310 (767)
T ss_pred cCCCEEEEeCCCCCccCHH---HHHHHHHHhc--cCCCCeEEEEECCCCcHHHH
Confidence 2334578999996532100 0000111111 12355567888999854433
No 173
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.38 E-value=0.0074 Score=59.95 Aligned_cols=60 Identities=25% Similarity=0.214 Sum_probs=40.1
Q ss_pred HHHHHHHHHHH-cC-CeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHH
Q 035699 333 PFREELLQAVS-EY-PVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAAR 393 (633)
Q Consensus 333 ~~q~~il~al~-~~-~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~r 393 (633)
+-|.+.+..+. ++ ++++|.|+.|||||+.+-. +.......+.+|+++.||.-+|..+...
T Consensus 4 ~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~-~~~~~~~~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 4 EEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKA-LAEALEAAGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHH-HHHHHHHTT--EEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHH-HHHHHHhCCCeEEEECCcHHHHHHHHHh
Confidence 44566666664 43 5788999999999987544 3222122334899999999988776654
No 174
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.33 E-value=0.27 Score=58.61 Aligned_cols=63 Identities=21% Similarity=0.161 Sum_probs=44.0
Q ss_pred cCCChHHHHHHHHHHHc-CCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHH
Q 035699 328 TLPIYPFREELLQAVSE-YPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVA 391 (633)
Q Consensus 328 ~LPi~~~q~~il~al~~-~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva 391 (633)
...+.+-|...+..+.. +++++|+|++|+||||.+-..+. .....+.+|+++.||-.+|..+.
T Consensus 350 ~~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~-~~~~~g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAARE-AWEAAGYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred cCCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHH-HHHhCCCeEEEEeCcHHHHHHHH
Confidence 35566777777777766 58899999999999987554332 11112337889999988776554
No 175
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.27 E-value=0.12 Score=63.14 Aligned_cols=64 Identities=22% Similarity=0.240 Sum_probs=45.5
Q ss_pred ccCCChHHHHHHHHHHHc-CCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHH
Q 035699 327 KTLPIYPFREELLQAVSE-YPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVA 391 (633)
Q Consensus 327 ~~LPi~~~q~~il~al~~-~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva 391 (633)
..+.+.+-|.+.+..+.+ +++++|+|..||||||.+- .+.+..-..+.+|+.+.||-.+|..+.
T Consensus 343 ~g~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~-~~~~~~e~~G~~V~~~ApTGkAA~~L~ 407 (988)
T PRK13889 343 RGLVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLG-VAREAWEAAGYEVRGAALSGIAAENLE 407 (988)
T ss_pred cCCCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHH-HHHHHHHHcCCeEEEecCcHHHHHHHh
Confidence 456778888888887776 5688999999999998743 233221112337889999988876553
No 176
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=96.24 E-value=0.036 Score=64.89 Aligned_cols=141 Identities=16% Similarity=0.236 Sum_probs=88.7
Q ss_pred ccEEEeecccCH-HhHhhhhC---CCCEE--EeCCeeeeEE---EEEEc----CCc-hhHHHHHHHHHHHHHhcCCCCCE
Q 035699 456 LKLLISSATLDA-ENFSDYFG---SAPIF--KIPRRRYHVE---LFYTK----APE-ADYIEAAIVTALQIHVNEPIGDI 521 (633)
Q Consensus 456 lklil~SAT~~~-~~~s~~f~---~~pii--~i~gr~~pv~---~~y~~----~~~-~~yl~~~v~~l~~i~~~~~~g~i 521 (633)
..+|++|||+.+ ..|..+.+ ....+ ..+...|+.. ..+.+ .+. ..++......+..+.... +|.+
T Consensus 404 ~~~vl~SaTL~~~~~f~~~~~~~~~~~~~~~~~~~spf~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~ 482 (654)
T COG1199 404 ASVVLTSATLSPLDSFSSLLGLLGLEEKLRFLSLPSPFNYEEQGQLYVPTDLPEPREPELLAKLAAYLREILKAS-PGGV 482 (654)
T ss_pred CcEEEeeeeccCCCcHHHHHHHcCCccccceeccCCCCChhhcceEeccccCCCCCChHHHHHHHHHHHHHHhhc-CCCE
Confidence 458999999944 44554432 11111 2222222211 12221 122 256666666777766555 5799
Q ss_pred EEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCe-eEEEeCCccccCCCCCCc--cE
Q 035699 522 LVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGAR-KVVLATNIAETSLTIDGI--KY 598 (633)
Q Consensus 522 LVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~r-kVLvATdIAerGLdIp~V--~~ 598 (633)
|||+|+....+.+++.+.... ....+..+|.-+... .++.|..+.- .++|+|.-..-|+|+||= ..
T Consensus 483 lvlF~Sy~~l~~~~~~~~~~~--------~~~~v~~q~~~~~~~---~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~ 551 (654)
T COG1199 483 LVLFPSYEYLKRVAERLKDER--------STLPVLTQGEDEREE---LLEKFKASGEGLILVGGGSFWEGVDFPGDALRL 551 (654)
T ss_pred EEEeccHHHHHHHHHHHhhcC--------ccceeeecCCCcHHH---HHHHHHHhcCCeEEEeeccccCcccCCCCCeeE
Confidence 999999999999999997742 113456677666654 4444444333 899999999999999854 66
Q ss_pred EEeCCCCccc
Q 035699 599 VIDPGFAKVK 608 (633)
Q Consensus 599 VID~G~~k~~ 608 (633)
||=.|+|..+
T Consensus 552 vvI~~lPfp~ 561 (654)
T COG1199 552 VVIVGLPFPN 561 (654)
T ss_pred EEEEecCCCC
Confidence 7777888764
No 177
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.21 E-value=0.0058 Score=61.28 Aligned_cols=56 Identities=21% Similarity=0.140 Sum_probs=37.0
Q ss_pred CCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccC-CeeeecchhH
Q 035699 329 LPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQ-GKIGCTQLRR 384 (633)
Q Consensus 329 LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~-gkilitqPrR 384 (633)
-|....|...++++.+++.+++.|+.|||||+......++....+. .+++++-|.-
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v 59 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPV 59 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S-
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence 4778889999999999999999999999999765555544422211 2899998863
No 178
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=96.18 E-value=0.0087 Score=71.05 Aligned_cols=191 Identities=16% Similarity=0.119 Sum_probs=110.3
Q ss_pred eEEEeccCCChhhchHHHHHHHhccccC-CeeeecchhHHHHHHHHHHHHHHhCCcccceEeeeeeccc---ccCCCCcE
Q 035699 347 VLVIVGETGSGKTTQIPQYLYEAGYTKQ-GKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFED---CTSDKTVL 422 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~Lle~~~~~~-gkilitqPrR~aA~qva~rva~e~g~~vg~~VGy~ir~e~---~~s~~t~I 422 (633)
++++-+|||||||..+-..+.......+ ++++++.|-..+...-+......+-.+ |..++-...... ..-..+.|
T Consensus 945 ~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~-g~k~ie~tgd~~pd~~~v~~~~~ 1023 (1230)
T KOG0952|consen 945 NFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELP-GIKVIELTGDVTPDVKAVREADI 1023 (1230)
T ss_pred hhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccC-CceeEeccCccCCChhheecCce
Confidence 3567799999999887666554433333 499999999998887777666655443 433331111111 11245789
Q ss_pred EEeCchHHHHHHhcCC---CCCCceeee---------------eecccC---------CCccEEEee-cccCHHhHhhhh
Q 035699 423 KYMTDGMLLREIVLEP---SLESYSVLI---------------DLINYR---------PDLKLLISS-ATLDAENFSDYF 474 (633)
Q Consensus 423 iv~TpGrLL~~l~~~~---~L~~~s~vI---------------di~~~r---------pdlklil~S-AT~~~~~~s~~f 474 (633)
+|.||........+.. -+.+++.+| .++..+ +.++++.+| |-.|+..+++|+
T Consensus 1024 ~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~na~dla~wl 1103 (1230)
T KOG0952|consen 1024 VITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGEDRGPVLEVIVSRMNYISSQTEEPVRYLGLSTALANANDLADWL 1103 (1230)
T ss_pred EEcccccccCccccccchhhhccccceeecccccccCCCcceEEEEeeccccCccccCcchhhhhHhhhhhccHHHHHHh
Confidence 9999998877665433 466666666 111111 234566554 555888899888
Q ss_pred CCCCEEEe--CCeeeeEEEEEEcCCchhHH-HH--HHHHHHHHHhcCCC-CCEEEEcCcHHHHHHHHHHH
Q 035699 475 GSAPIFKI--PRRRYHVELFYTKAPEADYI-EA--AIVTALQIHVNEPI-GDILVFLTGQDQFETAEEIL 538 (633)
Q Consensus 475 ~~~pii~i--~gr~~pv~~~y~~~~~~~yl-~~--~v~~l~~i~~~~~~-g~iLVFl~t~~eie~l~~~L 538 (633)
+-.+.+.. .-+..|...+...-|..-|. .- .-.-.++.+.+.+| .+.|||+.++..-..-+--|
T Consensus 1104 ~~~~~~nf~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp~~p~lifv~srrqtrlta~~l 1173 (1230)
T KOG0952|consen 1104 NIKDMYNFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSPIKPVLIFVSSRRQTRLTALDL 1173 (1230)
T ss_pred CCCCcCCCCcccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCCCCceEEEeecccccccchHhH
Confidence 75555332 22344555555544442121 10 01223444455544 78999999887544443333
No 179
>PRK10536 hypothetical protein; Provisional
Probab=96.14 E-value=0.0085 Score=62.00 Aligned_cols=57 Identities=25% Similarity=0.199 Sum_probs=41.8
Q ss_pred cCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccC-CeeeecchhH
Q 035699 328 TLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQ-GKIGCTQLRR 384 (633)
Q Consensus 328 ~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~-gkilitqPrR 384 (633)
.-|....|..++.++.++..+++.|++|||||+.......+....+. .+++++-|.-
T Consensus 57 i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v 114 (262)
T PRK10536 57 ILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVL 114 (262)
T ss_pred ccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCC
Confidence 35677778888999999999999999999999876655554322211 2778877763
No 180
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=96.08 E-value=0.27 Score=58.03 Aligned_cols=62 Identities=16% Similarity=0.206 Sum_probs=47.9
Q ss_pred CceEEEeccCCCCHHHHHHHhCCCC--CCCeeEE-EeCCccccCCCCCCccEEEeCCCCccccccCCCC
Q 035699 550 AELIICPIYGNLPTELQAKIFEPTP--EGARKVV-LATNIAETSLTIDGIKYVIDPGFAKVKSYNPKTG 615 (633)
Q Consensus 550 ~~~~v~~lHg~l~~~~R~~i~~~f~--~g~rkVL-vATdIAerGLdIp~V~~VID~G~~k~~~yd~~~g 615 (633)
.++.++.|||.|+..+|..+.+.|- .+.-+|+ ++|-...-||+.-|.+-||=+ ++.|||.+-
T Consensus 618 ~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~----D~dWNPa~d 682 (776)
T KOG0390|consen 618 RGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILF----DPDWNPAVD 682 (776)
T ss_pred cCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEe----CCCCCchhH
Confidence 3889999999999999999999885 3343555 456777899999999999854 345666543
No 181
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=96.06 E-value=0.034 Score=66.79 Aligned_cols=136 Identities=23% Similarity=0.259 Sum_probs=93.6
Q ss_pred cEEEeeccc--CHHhHhhhhCCCCEEEeCCeeeeE------EEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcH
Q 035699 457 KLLISSATL--DAENFSDYFGSAPIFKIPRRRYHV------ELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQ 528 (633)
Q Consensus 457 klil~SAT~--~~~~~s~~f~~~pii~i~gr~~pv------~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~ 528 (633)
++-.|+.|. .+..|.+.+ +-+++.||..+ |+ +..| ......+.+.+..+..+|.. .-||||-+.+.
T Consensus 565 kLsGMTGTA~tea~Ef~~IY-~L~Vv~IPTnr-P~~R~D~~D~vy--~t~~eK~~Aii~ei~~~~~~--GrPVLVGT~SV 638 (1112)
T PRK12901 565 KLAGMTGTAETEAGEFWDIY-KLDVVVIPTNR-PIARKDKEDLVY--KTKREKYNAVIEEITELSEA--GRPVLVGTTSV 638 (1112)
T ss_pred hhcccCCCCHHHHHHHHHHh-CCCEEECCCCC-CcceecCCCeEe--cCHHHHHHHHHHHHHHHHHC--CCCEEEEeCcH
Confidence 677888887 334565554 46677777532 22 1222 22345567777788887754 36899999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCC--------CccEEE
Q 035699 529 DQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTID--------GIKYVI 600 (633)
Q Consensus 529 ~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp--------~V~~VI 600 (633)
+.-+.+.++|... +++.-.|.+..-..+-..|-+.-.+|. |-||||.|.||-||- |==|||
T Consensus 639 e~SE~lS~~L~~~---------gI~H~VLNAK~h~~EAeIVA~AG~~Ga--VTIATNMAGRGTDIkLg~~V~e~GGL~VI 707 (1112)
T PRK12901 639 EISELLSRMLKMR---------KIPHNVLNAKLHQKEAEIVAEAGQPGT--VTIATNMAGRGTDIKLSPEVKAAGGLAII 707 (1112)
T ss_pred HHHHHHHHHHHHc---------CCcHHHhhccchhhHHHHHHhcCCCCc--EEEeccCcCCCcCcccchhhHHcCCCEEE
Confidence 9999999999884 555556666654555445556666775 889999999999996 334888
Q ss_pred eCCCCcccc
Q 035699 601 DPGFAKVKS 609 (633)
Q Consensus 601 D~G~~k~~~ 609 (633)
-+..+....
T Consensus 708 gTerheSrR 716 (1112)
T PRK12901 708 GTERHESRR 716 (1112)
T ss_pred EccCCCcHH
Confidence 777766443
No 182
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.06 E-value=0.003 Score=67.54 Aligned_cols=123 Identities=24% Similarity=0.226 Sum_probs=62.4
Q ss_pred cCCeEEEeccCCChhhchHHHHHHHhccccCCeeee--cchhHHHHHHHHHHHHHHhCCcccce-Eeee---eeccc---
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGC--TQLRRVAAMSVAARVSQEMGVKLGHE-VGYS---IRFED--- 414 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkili--tqPrR~aA~qva~rva~e~g~~vg~~-VGy~---ir~e~--- 414 (633)
.+.++.++||+|+||||.+........ ..+++|++ +-|.|.+|.......+..+++.+-.. .|.. +.++.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~-~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK-AQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-hcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 457888999999999998665543321 22345443 45667776655555666666543100 0000 00110
Q ss_pred -ccCCCCcEEEeCchHHHHHHhcCCCCCCceeee-eecccCCCccEEEeecccCH
Q 035699 415 -CTSDKTVLKYMTDGMLLREIVLEPSLESYSVLI-DLINYRPDLKLLISSATLDA 467 (633)
Q Consensus 415 -~~s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-di~~~rpdlklil~SAT~~~ 467 (633)
.....-.|+|=|||++-..-..-..|..+.-++ .+....|+-.++.++||...
T Consensus 192 ~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~ 246 (318)
T PRK10416 192 AKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ 246 (318)
T ss_pred HHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh
Confidence 011223577889998641100000011111111 11233466678889999843
No 183
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=96.03 E-value=0.0098 Score=67.58 Aligned_cols=69 Identities=20% Similarity=0.363 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcc
Q 035699 333 PFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKL 402 (633)
Q Consensus 333 ~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~v 402 (633)
.-|...+.+++++...+|+||+|+|||....-+++...-...++|+|+.|.-+|+-++|..+- ..|.++
T Consensus 413 ~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh-~tgLKV 481 (935)
T KOG1802|consen 413 ASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIH-KTGLKV 481 (935)
T ss_pred hHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHH-hcCceE
Confidence 458888999999999999999999999765544443323345699999999999999998663 344443
No 184
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=96.01 E-value=0.19 Score=58.50 Aligned_cols=84 Identities=15% Similarity=0.194 Sum_probs=61.6
Q ss_pred CCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCC-C--CeeEEEeCCccccCCCCCC
Q 035699 519 GDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPE-G--ARKVVLATNIAETSLTIDG 595 (633)
Q Consensus 519 g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~-g--~rkVLvATdIAerGLdIp~ 595 (633)
..+|||-.--.-.+-+..++.- .++..|-|-|.++.++|...++.|-. + +--.+|+|=....||+...
T Consensus 488 hRVLIFSQmt~mLDILeDyc~~---------R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~a 558 (971)
T KOG0385|consen 488 HRVLIFSQMTRMLDILEDYCML---------RGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTA 558 (971)
T ss_pred CeEEEeHHHHHHHHHHHHHHHh---------cCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccccccccc
Confidence 4688886554444444444433 48999999999999999999888753 2 4456789999999999999
Q ss_pred ccEEEeCCCCccccccCCCC
Q 035699 596 IKYVIDPGFAKVKSYNPKTG 615 (633)
Q Consensus 596 V~~VID~G~~k~~~yd~~~g 615 (633)
.+.||=+ ..-|||+..
T Consensus 559 ADtVIly----DSDWNPQ~D 574 (971)
T KOG0385|consen 559 ADTVILY----DSDWNPQVD 574 (971)
T ss_pred ccEEEEe----cCCCCchhh
Confidence 9999854 234676543
No 185
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=95.98 E-value=0.012 Score=69.34 Aligned_cols=66 Identities=17% Similarity=0.144 Sum_probs=46.9
Q ss_pred HHHHHHHc-----CCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHH----HHHHHhCCcc
Q 035699 337 ELLQAVSE-----YPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAA----RVSQEMGVKL 402 (633)
Q Consensus 337 ~il~al~~-----~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~----rva~e~g~~v 402 (633)
.|..++.+ +..++|.|+||+|||.+.+.|........+.+|+|...|..|-.|+.. .+.+.+|..+
T Consensus 36 ~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~~k~vVIST~T~~LQeQL~~kDlP~l~~~l~~~~ 110 (697)
T PRK11747 36 EVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAEKKKLVISTATVALQEQLVSKDLPLLLKISGLDF 110 (697)
T ss_pred HHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHhhhhhHHHHHcCCCc
Confidence 45556655 478999999999999997777654434445589999999999888753 2444445443
No 186
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=95.94 E-value=0.062 Score=55.63 Aligned_cols=117 Identities=14% Similarity=-0.012 Sum_probs=58.1
Q ss_pred HcCCeEEEeccCCChhhchHHHHHH---Hhcccc-CCeeeecchhHHHHHHHHHHHHHHhCC-cccceEeeeeec-----
Q 035699 343 SEYPVLVIVGETGSGKTTQIPQYLY---EAGYTK-QGKIGCTQLRRVAAMSVAARVSQEMGV-KLGHEVGYSIRF----- 412 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~lp~~Ll---e~~~~~-~gkilitqPrR~aA~qva~rva~e~g~-~vg~~VGy~ir~----- 412 (633)
......++.-++|+|||.+...++. ...-.. .+.++|++|.-.+ .+-...+...... .+ ..+-|.-..
T Consensus 23 ~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~-~~W~~E~~~~~~~~~~-~v~~~~~~~~~~~~ 100 (299)
T PF00176_consen 23 SPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLL-SQWKEEIEKWFDPDSL-RVIIYDGDSERRRL 100 (299)
T ss_dssp TTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTH-HHHHHHHHHHSGT-TS--EEEESSSCHHHHT
T ss_pred cCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchh-hhhhhhhccccccccc-cccccccccccccc
Confidence 3456788889999999987655544 221111 1158999998444 4444445554422 22 111111111
Q ss_pred ccccCCCCcEEEeCchHHH--------HHHhcCCCCCCceeee-eecccCC--------------CccEEEeeccc
Q 035699 413 EDCTSDKTVLKYMTDGMLL--------REIVLEPSLESYSVLI-DLINYRP--------------DLKLLISSATL 465 (633)
Q Consensus 413 e~~~s~~t~Iiv~TpGrLL--------~~l~~~~~L~~~s~vI-di~~~rp--------------dlklil~SAT~ 465 (633)
.........++++|...+. ..+.. -++..|| |..|... ....+++|||+
T Consensus 101 ~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~----~~~~~vIvDEaH~~k~~~s~~~~~l~~l~~~~~~lLSgTP 172 (299)
T PF00176_consen 101 SKNQLPKYDVVITTYETLRKARKKKDKEDLKQ----IKWDRVIVDEAHRLKNKDSKRYKALRKLRARYRWLLSGTP 172 (299)
T ss_dssp TSSSCCCSSEEEEEHHHHH--TSTHTTHHHHT----SEEEEEEETTGGGGTTTTSHHHHHHHCCCECEEEEE-SS-
T ss_pred cccccccceeeecccccccccccccccccccc----ccceeEEEecccccccccccccccccccccceEEeecccc
Confidence 0112345789999999998 22221 2366666 5554321 23678899997
No 187
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=95.81 E-value=0.0067 Score=62.24 Aligned_cols=66 Identities=18% Similarity=0.408 Sum_probs=58.2
Q ss_pred hhhhHhhhhhhhhhcCchhHHHHHHHHHhhccCChHHHHHHhhhcCCCCCHhHHHHHHHHHhhCCC
Q 035699 6 NLKTWVSDKLISLLGYSQPAVVQYVIGLSKQALSSADLETKLQEFEFSSTTETRAFAQEIFARVPR 71 (633)
Q Consensus 6 ~l~~wvsD~l~~llG~sd~~~~~~~~~~a~~a~s~~~l~~~L~~~~~~~~~~~~~Fa~el~~r~p~ 71 (633)
=|+-||.-.+-+||||-|-.||.||...--.++.++-=.=+|.=+||-..-.++.|..|||+-+-.
T Consensus 44 VlkPWItkrvneilgfEDdVViefvynqLee~k~ldpkkmQiNlTGFLngrnAreFmgeLW~LliS 109 (354)
T KOG2146|consen 44 VLKPWITKRVNEILGFEDDVVIEFVYNQLEEAKNLDPKKMQINLTGFLNGRNAREFMGELWSLLIS 109 (354)
T ss_pred hhhHHHHHHHHHhhccccchhHHHHHHHHhhhcCCCchheeeeeehhcccccHHHHHHHHHHHHHh
Confidence 478999999999999999999999999988888888766667778987767899999999998853
No 188
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.79 E-value=0.0051 Score=64.35 Aligned_cols=56 Identities=25% Similarity=0.316 Sum_probs=37.2
Q ss_pred CCeEEEeccCCChhhchHHHHHHHhccccCCeee--ecchhHHHHHHHHHHHHHHhCCc
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIG--CTQLRRVAAMSVAARVSQEMGVK 401 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkil--itqPrR~aA~qva~rva~e~g~~ 401 (633)
.++++++|++|+||||.+....... ...+.+|+ .+-|.|..|.......+..+|..
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l-~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~ 129 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKL-KKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVD 129 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH-HhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeE
Confidence 4678889999999999866554432 12223443 35677887776666677777744
No 189
>COG4889 Predicted helicase [General function prediction only]
Probab=95.65 E-value=0.05 Score=63.78 Aligned_cols=89 Identities=13% Similarity=0.226 Sum_probs=59.4
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhc----ccCCCCCce--EEEeccCCCCHHHHHHHhC---CCCCCCeeEEEeCCccccCC
Q 035699 521 ILVFLTGQDQFETAEEILKQRTR----GLGTKIAEL--IICPIYGNLPTELQAKIFE---PTPEGARKVVLATNIAETSL 591 (633)
Q Consensus 521 iLVFl~t~~eie~l~~~L~~~~~----~l~~~~~~~--~v~~lHg~l~~~~R~~i~~---~f~~g~rkVLvATdIAerGL 591 (633)
.|-||.+.+.-..+.+.+..... .+-.+.+++ .+-.+-|.|...+|..... .|++...+||=---.+.-|+
T Consensus 463 AIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGV 542 (1518)
T COG4889 463 AIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGV 542 (1518)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCC
Confidence 46677666655555544433211 111222344 4555667898888865543 67889999887777889999
Q ss_pred CCCCccEEEeCCCCccccccCCCCce
Q 035699 592 TIDGIKYVIDPGFAKVKSYNPKTGME 617 (633)
Q Consensus 592 dIp~V~~VID~G~~k~~~yd~~~g~~ 617 (633)
|+|..+-|| .|||++.|-
T Consensus 543 DVPaLDsVi--------Ff~pr~smV 560 (1518)
T COG4889 543 DVPALDSVI--------FFDPRSSMV 560 (1518)
T ss_pred CccccceEE--------EecCchhHH
Confidence 999999999 478887663
No 190
>PF05729 NACHT: NACHT domain
Probab=95.58 E-value=0.018 Score=54.05 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=22.2
Q ss_pred CCCccEEEeecccCHHhHhhhhCCCCEEEeCC
Q 035699 453 RPDLKLLISSATLDAENFSDYFGSAPIFKIPR 484 (633)
Q Consensus 453 rpdlklil~SAT~~~~~~s~~f~~~pii~i~g 484 (633)
.|+.++++.|.+-....+..++.....+.+++
T Consensus 118 ~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~ 149 (166)
T PF05729_consen 118 PPGVKLIITSRPRAFPDLRRRLKQAQILELEP 149 (166)
T ss_pred CCCCeEEEEEcCChHHHHHHhcCCCcEEEECC
Confidence 56788888887776666777776665555543
No 191
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.51 E-value=0.027 Score=66.28 Aligned_cols=70 Identities=23% Similarity=0.374 Sum_probs=52.9
Q ss_pred cCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHH---HHHHhccccCCeeeecchhHHHHHHHHHHHHHHhC
Q 035699 328 TLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQ---YLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMG 399 (633)
Q Consensus 328 ~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~---~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g 399 (633)
+-|+.+.|...+..- ...++|.|..|||||+.+.- ||+..+...+.+|+++..++.||..+..|+...+|
T Consensus 194 ~~~L~~~Q~~av~~~--~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg 266 (684)
T PRK11054 194 SSPLNPSQARAVVNG--EDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLG 266 (684)
T ss_pred CCCCCHHHHHHHhCC--CCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcC
Confidence 467888887766533 34578889999999987543 45554434444899999999999999999988876
No 192
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.47 E-value=0.024 Score=59.54 Aligned_cols=60 Identities=23% Similarity=0.290 Sum_probs=40.4
Q ss_pred HcCCeEEEeccCCChhhchHHHHHHHhccccC-C--eeeecchhHHHHHHHHHHHHHHhCCcc
Q 035699 343 SEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQ-G--KIGCTQLRRVAAMSVAARVSQEMGVKL 402 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~-g--kilitqPrR~aA~qva~rva~e~g~~v 402 (633)
..+.+++++||||+||||.+...........+ . .++-+-|.|..|.......+..+|+.+
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~ 254 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPV 254 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCce
Confidence 45678999999999999987766544322212 2 344567778777766666777676554
No 193
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=95.46 E-value=0.012 Score=56.96 Aligned_cols=88 Identities=20% Similarity=0.310 Sum_probs=58.6
Q ss_pred CCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCC--ccccCCCC
Q 035699 516 EPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATN--IAETSLTI 593 (633)
Q Consensus 516 ~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATd--IAerGLdI 593 (633)
..+|.+|||+|+....+.+.+.+...... .++.++.- .......+++.|..+...||+|+. -..-|||+
T Consensus 7 ~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~-----~~~~v~~q----~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~ 77 (167)
T PF13307_consen 7 AVPGGVLVFFPSYRRLEKVYERLKERLEE-----KGIPVFVQ----GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDF 77 (167)
T ss_dssp CCSSEEEEEESSHHHHHHHHTT-TSS-E------ETSCEEES----TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHhhccc-----ccceeeec----CcchHHHHHHHHHhccCeEEEEEecccEEEeecC
Confidence 34699999999999999999988764210 12223222 244566778888888899999998 99999999
Q ss_pred CC--ccEEEeCCCCccccccC
Q 035699 594 DG--IKYVIDPGFAKVKSYNP 612 (633)
Q Consensus 594 p~--V~~VID~G~~k~~~yd~ 612 (633)
+| ..+||=.|+|..+.-||
T Consensus 78 ~~~~~r~vii~glPfp~~~d~ 98 (167)
T PF13307_consen 78 PGDLLRAVIIVGLPFPPPSDP 98 (167)
T ss_dssp ECESEEEEEEES-----TTCH
T ss_pred CCchhheeeecCCCCCCCCCH
Confidence 86 77899999998654444
No 194
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.42 E-value=0.027 Score=59.74 Aligned_cols=53 Identities=30% Similarity=0.300 Sum_probs=35.8
Q ss_pred HHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhcc-ccCCeeeecchhHHH
Q 035699 334 FREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGY-TKQGKIGCTQLRRVA 386 (633)
Q Consensus 334 ~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~-~~~gkilitqPrR~a 386 (633)
+..-+..++..+.+++|+|+|||||||.+-..+..... ....+++++.-..++
T Consensus 121 ~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 121 QRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred HHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhh
Confidence 34455667778889999999999999987554432211 113378877766665
No 195
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=95.41 E-value=0.28 Score=59.60 Aligned_cols=86 Identities=16% Similarity=0.203 Sum_probs=72.6
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCC-CC--CeeEEEeCCccccCCCCC
Q 035699 518 IGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTP-EG--ARKVVLATNIAETSLTID 594 (633)
Q Consensus 518 ~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~-~g--~rkVLvATdIAerGLdIp 594 (633)
+..+|||-.-....+-|+++|..+ +++.--|-|+++.+.|..++..|- +| .--.|+||=.-..||+.-
T Consensus 699 GHrVLIFSQMVRmLDIL~eYL~~r---------~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLa 769 (1373)
T KOG0384|consen 699 GHRVLIFSQMVRMLDILAEYLSLR---------GYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLA 769 (1373)
T ss_pred CceEEEhHHHHHHHHHHHHHHHHc---------CCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCccccccc
Confidence 357999999999999999999875 899999999999999999998885 23 456899999999999999
Q ss_pred CccEEEeCCCCccccccCCCCc
Q 035699 595 GIKYVIDPGFAKVKSYNPKTGM 616 (633)
Q Consensus 595 ~V~~VID~G~~k~~~yd~~~g~ 616 (633)
..+.||=|+ .-|||++..
T Consensus 770 tADTVIIFD----SDWNPQNDL 787 (1373)
T KOG0384|consen 770 TADTVIIFD----SDWNPQNDL 787 (1373)
T ss_pred ccceEEEeC----CCCCcchHH
Confidence 999888553 348887654
No 196
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=95.39 E-value=0.022 Score=66.69 Aligned_cols=52 Identities=17% Similarity=0.088 Sum_probs=40.1
Q ss_pred HHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHH
Q 035699 339 LQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSV 390 (633)
Q Consensus 339 l~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qv 390 (633)
..++.++..++|.||||+|||.+...+.+......+.++++..+|+.+-.|+
T Consensus 28 ~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~~~viist~t~~lq~q~ 79 (654)
T COG1199 28 AEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEGKKVIISTRTKALQEQL 79 (654)
T ss_pred HHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcCCcEEEECCCHHHHHHH
Confidence 3677788889999999999999988877665544445788888888665444
No 197
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.34 E-value=0.037 Score=64.23 Aligned_cols=64 Identities=19% Similarity=0.217 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHh--ccc-cCCeeeecchhHHHHHHHHHHHHH
Q 035699 333 PFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEA--GYT-KQGKIGCTQLRRVAAMSVAARVSQ 396 (633)
Q Consensus 333 ~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~--~~~-~~gkilitqPrR~aA~qva~rva~ 396 (633)
.+|...+.....+..++|+|++||||||.+...+... ... ....|+++.||.-||..+.+.+..
T Consensus 155 d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~ 221 (615)
T PRK10875 155 DWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGK 221 (615)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHh
Confidence 4555566666677889999999999999865544321 111 123789999999998887776654
No 198
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.33 E-value=0.024 Score=60.75 Aligned_cols=51 Identities=24% Similarity=0.199 Sum_probs=33.5
Q ss_pred HHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccc-cCCeeeecchhHHH
Q 035699 336 EELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYT-KQGKIGCTQLRRVA 386 (633)
Q Consensus 336 ~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~-~~gkilitqPrR~a 386 (633)
.-+..++..+.+++|+|+|||||||.+-..+...... .+.+++++..+.++
T Consensus 135 ~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 135 SVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred HHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCccc
Confidence 3455677778899999999999998764433222111 22377777766554
No 199
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.30 E-value=0.016 Score=60.07 Aligned_cols=48 Identities=31% Similarity=0.270 Sum_probs=31.8
Q ss_pred HHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHH
Q 035699 338 LLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVA 386 (633)
Q Consensus 338 il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~a 386 (633)
+-.++..+.+++|+|+|||||||.+-.++... .....+++++....+.
T Consensus 120 l~~~v~~~~~ili~G~tGSGKTT~l~all~~i-~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 120 LRSAVRGRGNILISGPTGSGKTTLLNALLEEI-PPEDERIVTIEDPPEL 167 (270)
T ss_dssp HHHCHHTTEEEEEEESTTSSHHHHHHHHHHHC-HTTTSEEEEEESSS-S
T ss_pred HhhccccceEEEEECCCccccchHHHHHhhhc-cccccceEEeccccce
Confidence 33455678899999999999999886555432 2222477776655433
No 200
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.24 E-value=0.03 Score=65.91 Aligned_cols=67 Identities=27% Similarity=0.411 Sum_probs=47.9
Q ss_pred ChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHH---HHHh-ccccCCeeeecchhHHHHHHHHHHHHHHhCC
Q 035699 331 IYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQY---LYEA-GYTKQGKIGCTQLRRVAAMSVAARVSQEMGV 400 (633)
Q Consensus 331 i~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~---Lle~-~~~~~gkilitqPrR~aA~qva~rva~e~g~ 400 (633)
+.+.|.+++... .+ .++|.|..|||||+.+..- |++. +. .+.+|+|+..|+-||..+..|+...+|.
T Consensus 3 Ln~~Q~~av~~~-~g-~~lV~AgpGSGKT~vL~~Ria~Li~~~~v-~p~~IL~lTFT~kAA~em~~Rl~~~l~~ 73 (672)
T PRK10919 3 LNPGQQQAVEFV-TG-PCLVLAGAGSGKTRVITNKIAHLIRGCGY-QARHIAAVTFTNKAAREMKERVAQTLGR 73 (672)
T ss_pred CCHHHHHHHhCC-CC-CEEEEecCCCCHHHHHHHHHHHHHHhcCC-CHHHeeeEechHHHHHHHHHHHHHHhCc
Confidence 345666666653 33 4677789999999876543 3332 22 2338999999999999999999988763
No 201
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=95.18 E-value=0.042 Score=63.57 Aligned_cols=64 Identities=19% Similarity=0.259 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHH---Hhcccc-CCeeeecchhHHHHHHHHHHHHH
Q 035699 333 PFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLY---EAGYTK-QGKIGCTQLRRVAAMSVAARVSQ 396 (633)
Q Consensus 333 ~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Ll---e~~~~~-~gkilitqPrR~aA~qva~rva~ 396 (633)
.+|...+.....+++++|+|++||||||.+...+. ...-.. +.+|+++.||--||..+.+.+..
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~ 215 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRK 215 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHh
Confidence 45666677777889999999999999997655432 221111 13799999999998877665544
No 202
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.10 E-value=0.02 Score=51.96 Aligned_cols=59 Identities=25% Similarity=0.294 Sum_probs=34.8
Q ss_pred cCCeEEEeccCCChhhchHHHHHHHhccc-----cCCeeeecchhHHHHHHHHHHHHHHhCCcc
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYLYEAGYT-----KQGKIGCTQLRRVAAMSVAARVSQEMGVKL 402 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~Lle~~~~-----~~gkilitqPrR~aA~qva~rva~e~g~~v 402 (633)
++..++|.|++|||||+.+-.++...... ...-+.+..|...-...++..++..++...
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 66 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPL 66 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SS
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccc
Confidence 45679999999999999877776543211 112345555554455677777777777554
No 203
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.10 E-value=0.12 Score=57.71 Aligned_cols=81 Identities=22% Similarity=0.309 Sum_probs=61.5
Q ss_pred CCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEec--cCCCCHHHHHHHhCCCCCCCeeEEEeCCccc--cCCCCC
Q 035699 519 GDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPI--YGNLPTELQAKIFEPTPEGARKVVLATNIAE--TSLTID 594 (633)
Q Consensus 519 g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~l--Hg~l~~~~R~~i~~~f~~g~rkVLvATdIAe--rGLdIp 594 (633)
..|||+.|+-=+--.+...+++. ++.+..| |+....-.|++ +-|-.|...|+|-|.-|- |--+|.
T Consensus 553 s~~LiyIPSYfDFVRvRNy~K~e---------~i~F~~i~EYssk~~vsRAR--~lF~qgr~~vlLyTER~hffrR~~ik 621 (698)
T KOG2340|consen 553 SGILIYIPSYFDFVRVRNYMKKE---------EISFVMINEYSSKSKVSRAR--ELFFQGRKSVLLYTERAHFFRRYHIK 621 (698)
T ss_pred CceEEEecchhhHHHHHHHhhhh---------hcchHHHhhhhhHhhhhHHH--HHHHhcCceEEEEehhhhhhhhheec
Confidence 56999999999999999998874 3444444 44444444443 336688899999998765 778999
Q ss_pred CccEEEeCCCCccccc
Q 035699 595 GIKYVIDPGFAKVKSY 610 (633)
Q Consensus 595 ~V~~VID~G~~k~~~y 610 (633)
||.-||=+++|..+.|
T Consensus 622 GVk~vVfYqpP~~P~F 637 (698)
T KOG2340|consen 622 GVKNVVFYQPPNNPHF 637 (698)
T ss_pred ceeeEEEecCCCCcHH
Confidence 9999999999988764
No 204
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.10 E-value=0.065 Score=62.91 Aligned_cols=67 Identities=24% Similarity=0.279 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhcc---ccCCeeeecchhHHHHHHHHHHHHHHhCC
Q 035699 332 YPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGY---TKQGKIGCTQLRRVAAMSVAARVSQEMGV 400 (633)
Q Consensus 332 ~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~---~~~gkilitqPrR~aA~qva~rva~e~g~ 400 (633)
.+.|.+++... ...++|.|..|||||+.+..-+..... ....+|+|+..|+-+|.++-.|+...+|.
T Consensus 3 n~~Q~~av~~~--~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~ 72 (664)
T TIGR01074 3 NPQQQEAVEYV--TGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLGK 72 (664)
T ss_pred CHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhCc
Confidence 34566666543 345788899999999887654433211 12338999999999999999999988764
No 205
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.00 E-value=0.04 Score=59.05 Aligned_cols=53 Identities=25% Similarity=0.281 Sum_probs=33.6
Q ss_pred HHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhc-cccCCeeeecchhHHH
Q 035699 334 FREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAG-YTKQGKIGCTQLRRVA 386 (633)
Q Consensus 334 ~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~-~~~~gkilitqPrR~a 386 (633)
+.+-+..++..+.+++|+|+|||||||.+-..+.... .....+++++..+.++
T Consensus 137 ~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 137 QREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 3344555778889999999999999977644433221 1122367776665544
No 206
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.00 E-value=0.038 Score=62.66 Aligned_cols=66 Identities=24% Similarity=0.275 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccc-----cCCeeeecchhHHHHHHHHHHHHHHhC
Q 035699 332 YPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYT-----KQGKIGCTQLRRVAAMSVAARVSQEMG 399 (633)
Q Consensus 332 ~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~-----~~gkilitqPrR~aA~qva~rva~e~g 399 (633)
.+-|.+|+. -..+.++||+|..||||||..+.-+....|. ..+.|+|+.|.++...-++. |--++|
T Consensus 214 QkEQneIIR-~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~-VLPeLG 284 (747)
T COG3973 214 QKEQNEIIR-FEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISR-VLPELG 284 (747)
T ss_pred hHhHHHHHh-ccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHH-hchhhc
Confidence 334666655 3456789999999999999866543333232 23369999999999777655 444454
No 207
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.94 E-value=0.04 Score=65.23 Aligned_cols=55 Identities=15% Similarity=0.133 Sum_probs=37.6
Q ss_pred HHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccC--CeeeecchhHHHHHHH
Q 035699 336 EELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQ--GKIGCTQLRRVAAMSV 390 (633)
Q Consensus 336 ~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~--gkilitqPrR~aA~qv 390 (633)
..++.++.++..+++.||||+|||.+++-+.+......+ .+|+++..|..--.|+
T Consensus 20 ~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~ 76 (705)
T TIGR00604 20 RDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQA 76 (705)
T ss_pred HHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHH
Confidence 456677888999999999999999887666554322122 3787776665433333
No 208
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.84 E-value=0.12 Score=54.13 Aligned_cols=116 Identities=18% Similarity=0.230 Sum_probs=58.2
Q ss_pred cCCeEEEeccCCChhhchHHHHHHHhccccCCe--eeecchhHHHHHHHHHHHHHHhCCcccceEeeeee-cccc-----
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGK--IGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIR-FEDC----- 415 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gk--ilitqPrR~aA~qva~rva~e~g~~vg~~VGy~ir-~e~~----- 415 (633)
.++.+.++|++|+||||.+-...... ...+.+ ++.+-|.|..+.+.....+..+++.+. +.+... ....
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l-~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~--~~~~~~~l~~~l~~l~ 150 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQF-HGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVI--AVRDEAAMTRALTYFK 150 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHH-HHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEE--ecCCHHHHHHHHHHHH
Confidence 45789999999999998766554332 112222 344556776655544445565664431 111100 0000
Q ss_pred c-CCCCcEEEeCchHHHHHHhcCCCCCCceeeeeecccCCCccEEEeecccCH
Q 035699 416 T-SDKTVLKYMTDGMLLREIVLEPSLESYSVLIDLINYRPDLKLLISSATLDA 467 (633)
Q Consensus 416 ~-s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vIdi~~~rpdlklil~SAT~~~ 467 (633)
. ...-.|+|=|||+..+.- ..+..+..++. ...|+..++.+|||...
T Consensus 151 ~~~~~D~ViIDt~Gr~~~~~---~~l~el~~~~~--~~~~~~~~LVl~a~~~~ 198 (270)
T PRK06731 151 EEARVDYILIDTAGKNYRAS---ETVEEMIETMG--QVEPDYICLTLSASMKS 198 (270)
T ss_pred hcCCCCEEEEECCCCCcCCH---HHHHHHHHHHh--hhCCCeEEEEEcCccCH
Confidence 0 122347788888863110 00111111111 12355567788999844
No 209
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.84 E-value=0.03 Score=62.25 Aligned_cols=57 Identities=30% Similarity=0.378 Sum_probs=39.4
Q ss_pred CeEEEeccCCChhhchHHHHHHHhccccCC--eeeecchhHHHHHHHHHHHHHHhCCcc
Q 035699 346 PVLVIVGETGSGKTTQIPQYLYEAGYTKQG--KIGCTQLRRVAAMSVAARVSQEMGVKL 402 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~Lle~~~~~~g--kilitqPrR~aA~qva~rva~e~g~~v 402 (633)
.+++++|++||||||.+..+........+. .++.+-++|.+|.....+.+...|+++
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~ 158 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPV 158 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCce
Confidence 478889999999999876665442111222 345577888888777777777777654
No 210
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=94.51 E-value=0.06 Score=63.91 Aligned_cols=68 Identities=21% Similarity=0.290 Sum_probs=48.7
Q ss_pred ChHHHHHHHHHHHcCCeEEEeccCCChhhchHHH---HHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCC
Q 035699 331 IYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQ---YLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGV 400 (633)
Q Consensus 331 i~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~---~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~ 400 (633)
+.+.|.+++... ...++|.|..|||||+.+.. +|++..-..+.+|+++.-|+-||..+-.|+...+|.
T Consensus 10 Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~ 80 (721)
T PRK11773 10 LNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLGT 80 (721)
T ss_pred cCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhcc
Confidence 556676666643 33577889999999987654 343321122338999999999999999999988764
No 211
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.45 E-value=0.049 Score=60.48 Aligned_cols=114 Identities=20% Similarity=0.233 Sum_probs=60.1
Q ss_pred CeEEEeccCCChhhchHHHHHHHhccccCCe--eeecchhHHHHHHHHHHHHHHhCCcccceEe-ee---eeccc---cc
Q 035699 346 PVLVIVGETGSGKTTQIPQYLYEAGYTKQGK--IGCTQLRRVAAMSVAARVSQEMGVKLGHEVG-YS---IRFED---CT 416 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gk--ilitqPrR~aA~qva~rva~e~g~~vg~~VG-y~---ir~e~---~~ 416 (633)
.+++++|++||||||.+........ ..+.+ ++.+-|.|.+|....+..+...++++-...+ .. +..+. ..
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~-~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQ-RKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-HCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 5788999999999998665543221 11223 4446788888887767677777655421000 00 00000 00
Q ss_pred -CCCCcEEEeCchHHHHHHhcCCCCCCceeeeeecccCCCccEEEeeccc
Q 035699 417 -SDKTVLKYMTDGMLLREIVLEPSLESYSVLIDLINYRPDLKLLISSATL 465 (633)
Q Consensus 417 -s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vIdi~~~rpdlklil~SAT~ 465 (633)
...-.|+|=|||++-..-. .+..+..+.+. ..|+.-+++++||.
T Consensus 180 ~~~~DvViIDTaGr~~~d~~---lm~El~~i~~~--~~p~e~lLVlda~~ 224 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDS---LFEEMLQVAEA--IQPDNIIFVMDGSI 224 (429)
T ss_pred hCCCCEEEEECCCCCcchHH---HHHHHHHHhhh--cCCcEEEEEecccc
Confidence 1223478999998632100 01111111111 13666677888887
No 212
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.45 E-value=0.045 Score=59.19 Aligned_cols=49 Identities=22% Similarity=0.178 Sum_probs=32.8
Q ss_pred HHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHH
Q 035699 336 EELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVA 386 (633)
Q Consensus 336 ~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~a 386 (633)
.-+-.++..+.+++|+|+|||||||.+-..+.. +....+++.+..+.++
T Consensus 153 ~~l~~~v~~~~nilI~G~tGSGKTTll~aLl~~--i~~~~rivtiEd~~El 201 (344)
T PRK13851 153 AFLHACVVGRLTMLLCGPTGSGKTTMSKTLISA--IPPQERLITIEDTLEL 201 (344)
T ss_pred HHHHHHHHcCCeEEEECCCCccHHHHHHHHHcc--cCCCCCEEEECCCccc
Confidence 334456777899999999999999877544322 2223367776666544
No 213
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.43 E-value=0.024 Score=60.35 Aligned_cols=116 Identities=22% Similarity=0.232 Sum_probs=65.8
Q ss_pred CeEEEeccCCChhhchHHHHHHHhccccCCeeee--cchhHHHHHHHHHHHHHHhCCcccc-eEe---eeeecccc---c
Q 035699 346 PVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGC--TQLRRVAAMSVAARVSQEMGVKLGH-EVG---YSIRFEDC---T 416 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkili--tqPrR~aA~qva~rva~e~g~~vg~-~VG---y~ir~e~~---~ 416 (633)
.+++++|.+|+||||.+....+... ..+.+|++ .-+-|.+|.......++..|+.+-. .-| -++-|+-. .
T Consensus 140 ~Vil~vGVNG~GKTTTIaKLA~~l~-~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~Ak 218 (340)
T COG0552 140 FVILFVGVNGVGKTTTIAKLAKYLK-QQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAAK 218 (340)
T ss_pred EEEEEEecCCCchHhHHHHHHHHHH-HCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHHH
Confidence 4678899999999999877655431 22235555 5678999998888888888877621 111 01111111 1
Q ss_pred CCCCc-EEEeCchHHHHHHhcCCCCCCceeeeeec----ccCCCccEEEeeccc
Q 035699 417 SDKTV-LKYMTDGMLLREIVLEPSLESYSVLIDLI----NYRPDLKLLISSATL 465 (633)
Q Consensus 417 s~~t~-Iiv~TpGrLL~~l~~~~~L~~~s~vIdi~----~~rpdlklil~SAT~ 465 (633)
..+.+ +++=|.|||-.... .+..+.-|+.++ ..-|+-.++.+=||.
T Consensus 219 ar~~DvvliDTAGRLhnk~n---LM~EL~KI~rV~~k~~~~ap~e~llvlDAtt 269 (340)
T COG0552 219 ARGIDVVLIDTAGRLHNKKN---LMDELKKIVRVIKKDDPDAPHEILLVLDATT 269 (340)
T ss_pred HcCCCEEEEeCcccccCchh---HHHHHHHHHHHhccccCCCCceEEEEEEccc
Confidence 23444 56889999853211 122222232222 122444556668887
No 214
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=94.42 E-value=0.074 Score=57.94 Aligned_cols=69 Identities=17% Similarity=0.271 Sum_probs=47.3
Q ss_pred HHHHHHHHH------HcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHH--HHHHHHHhCCccc
Q 035699 334 FREELLQAV------SEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSV--AARVSQEMGVKLG 403 (633)
Q Consensus 334 ~q~~il~al------~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qv--a~rva~e~g~~vg 403 (633)
-|..++..+ ..+.++.|.|+-|+|||+.+-.+.... ...+..++++.||-.||..+ ...+-..++..++
T Consensus 5 eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~-~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~~ 81 (364)
T PF05970_consen 5 EQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYL-RSRGKKVLVTAPTGIAAFNIPGGRTIHSFFGIPIN 81 (364)
T ss_pred HHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHh-ccccceEEEecchHHHHHhccCCcchHHhcCcccc
Confidence 355555555 677889999999999997765444322 12334899999999999888 4445455555543
No 215
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.41 E-value=0.038 Score=54.90 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=17.4
Q ss_pred eEEEeccCCChhhchHHHHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQYLYE 368 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~Lle 368 (633)
.++|+|||||||||.+-..+..
T Consensus 3 lilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999987554443
No 216
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=94.38 E-value=0.096 Score=62.15 Aligned_cols=65 Identities=18% Similarity=0.167 Sum_probs=47.5
Q ss_pred HccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccC--CeeeecchhHHHHHHHH
Q 035699 326 RKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQ--GKIGCTQLRRVAAMSVA 391 (633)
Q Consensus 326 r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~--gkilitqPrR~aA~qva 391 (633)
.....+...|.+.+..+..+.+++|+|++||||||.+-..+... ...+ ..|+++.||--+|..+.
T Consensus 319 ~~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~-~~~~~~~~v~l~ApTg~AA~~L~ 385 (720)
T TIGR01448 319 KLRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELA-EELGGLLPVGLAAPTGRAAKRLG 385 (720)
T ss_pred hcCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHH-HHcCCCceEEEEeCchHHHHHHH
Confidence 34566778888888888899999999999999998765443221 1112 37888999988886554
No 217
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.35 E-value=0.042 Score=58.77 Aligned_cols=53 Identities=23% Similarity=0.145 Sum_probs=35.6
Q ss_pred hHHHHHHH-HHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHH
Q 035699 332 YPFREELL-QAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVA 386 (633)
Q Consensus 332 ~~~q~~il-~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~a 386 (633)
.+-+.++| .++....+++|+|.|||||||.+--++..-. ...+++|+.-|.+|
T Consensus 159 ~~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~i~--~~eRvItiEDtaEL 212 (355)
T COG4962 159 IRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGFID--SDERVITIEDTAEL 212 (355)
T ss_pred CHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCC--CcccEEEEeehhhh
Confidence 33344444 4455556999999999999998765554322 22389998887665
No 218
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=94.35 E-value=0.063 Score=63.65 Aligned_cols=68 Identities=21% Similarity=0.254 Sum_probs=48.2
Q ss_pred ChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHH---HHHhccccCCeeeecchhHHHHHHHHHHHHHHhCC
Q 035699 331 IYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQY---LYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGV 400 (633)
Q Consensus 331 i~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~---Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~ 400 (633)
+.+.|.+++... ...++|.|..|||||+.+..- |+...-....+|+++..|+-||..+..|+...+|.
T Consensus 5 Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~~ 75 (715)
T TIGR01075 5 LNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLGT 75 (715)
T ss_pred cCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhcc
Confidence 345566666543 235788899999999876643 33321122338999999999999999999988764
No 219
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.31 E-value=0.058 Score=60.16 Aligned_cols=57 Identities=26% Similarity=0.307 Sum_probs=37.7
Q ss_pred CCeEEEeccCCChhhchHHHHHHHhccccCCe--eeecchhHHHHHHHHHHHHHHhCCcc
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLYEAGYTKQGK--IGCTQLRRVAAMSVAARVSQEMGVKL 402 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gk--ilitqPrR~aA~qva~rva~e~g~~v 402 (633)
..+++++|++||||||.+........ ..+.+ ++.+-+.|.+|......++..+|+++
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~-~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~ 153 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFK-KKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPF 153 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcE
Confidence 35788899999999998665543221 12223 34456677777777777787777654
No 220
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=94.31 E-value=0.43 Score=48.63 Aligned_cols=111 Identities=17% Similarity=0.189 Sum_probs=69.3
Q ss_pred HHHHHccCCChHHHHHHHHHHHcC---CeEEEeccCCChhhchHHHHHHHhccccCCe-eeecchhHHHHHHHHHHHHHH
Q 035699 322 LQEERKTLPIYPFREELLQAVSEY---PVLVIVGETGSGKTTQIPQYLYEAGYTKQGK-IGCTQLRRVAAMSVAARVSQE 397 (633)
Q Consensus 322 l~~~r~~LPi~~~q~~il~al~~~---~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gk-ilitqPrR~aA~qva~rva~e 397 (633)
+.|....+-+.+.|.++...+.+. .+.+.+--.|.|||+.+...+.- .+..+.+ +.++.|.- +..+.+.-+...
T Consensus 15 l~E~e~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~-~LAdg~~LvrviVpk~-Ll~q~~~~L~~~ 92 (229)
T PF12340_consen 15 LFEIESNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLAL-ALADGSRLVRVIVPKA-LLEQMRQMLRSR 92 (229)
T ss_pred HHHHHcCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHH-HHcCCCcEEEEEcCHH-HHHHHHHHHHHH
Confidence 456678888888899998888864 67899999999999875433332 2334433 33455543 445555545444
Q ss_pred hCCcccceEeeeeecccccC-----------------CCCcEEEeCchHHHHHHh
Q 035699 398 MGVKLGHEVGYSIRFEDCTS-----------------DKTVLKYMTDGMLLREIV 435 (633)
Q Consensus 398 ~g~~vg~~VGy~ir~e~~~s-----------------~~t~Iiv~TpGrLL~~l~ 435 (633)
+|.-+|..| |.+.|...+. ....|+++||..++.+.+
T Consensus 93 lg~l~~r~i-~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L 146 (229)
T PF12340_consen 93 LGGLLNRRI-YHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKL 146 (229)
T ss_pred HHHHhCCee-EEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHH
Confidence 543333332 3444443321 234588999999987754
No 221
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.25 E-value=0.054 Score=58.38 Aligned_cols=47 Identities=26% Similarity=0.210 Sum_probs=31.7
Q ss_pred HHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHH
Q 035699 338 LLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVA 386 (633)
Q Consensus 338 il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~a 386 (633)
+-.++..+.+++|+|+|||||||.+-..+ .. .....+|+++.-+.++
T Consensus 153 L~~~v~~~~nili~G~tgSGKTTll~aL~-~~-ip~~~ri~tiEd~~El 199 (332)
T PRK13900 153 LEHAVISKKNIIISGGTSTGKTTFTNAAL-RE-IPAIERLITVEDAREI 199 (332)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHHHHH-hh-CCCCCeEEEecCCCcc
Confidence 44566788999999999999998874433 32 2233477766555544
No 222
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=94.23 E-value=1.8 Score=53.48 Aligned_cols=63 Identities=21% Similarity=0.197 Sum_probs=44.9
Q ss_pred ccCCChHHHHHHHHHHH-cCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHH
Q 035699 327 KTLPIYPFREELLQAVS-EYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSV 390 (633)
Q Consensus 327 ~~LPi~~~q~~il~al~-~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qv 390 (633)
..+.+.+-|.+.+..+. ++.+++|+|..||||||.+-... +..-..+.+|+.+.||--+|..+
T Consensus 378 ~~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~-~~~e~~G~~V~g~ApTgkAA~~L 441 (1102)
T PRK13826 378 RHARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAR-EAWEAAGYRVVGGALAGKAAEGL 441 (1102)
T ss_pred cCCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHH-HHHHHcCCeEEEEcCcHHHHHHH
Confidence 35677888888888774 57889999999999998765432 21111233788899998777554
No 223
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.14 E-value=0.14 Score=46.05 Aligned_cols=48 Identities=23% Similarity=0.224 Sum_probs=28.8
Q ss_pred HHHHHHHHc--CCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhH
Q 035699 336 EELLQAVSE--YPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRR 384 (633)
Q Consensus 336 ~~il~al~~--~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR 384 (633)
..+...+.. +..++|.|++|+|||+.+-..+... ...+..++++....
T Consensus 8 ~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~-~~~~~~v~~~~~~~ 57 (151)
T cd00009 8 EALREALELPPPKNLLLYGPPGTGKTTLARAIANEL-FRPGAPFLYLNASD 57 (151)
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh-hcCCCCeEEEehhh
Confidence 344555555 7789999999999997544443332 22233555554443
No 224
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=93.88 E-value=0.13 Score=61.03 Aligned_cols=68 Identities=25% Similarity=0.310 Sum_probs=48.2
Q ss_pred ChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHH---HHHhccccCCeeeecchhHHHHHHHHHHHHHHhCC
Q 035699 331 IYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQY---LYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGV 400 (633)
Q Consensus 331 i~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~---Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~ 400 (633)
+.+.|.+++... + ..++|.|..|||||+.+..- |++..-..+.+|+++.-|+-||..+..|+...+|.
T Consensus 5 Ln~~Q~~av~~~-~-g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~~ 75 (726)
T TIGR01073 5 LNPEQREAVKTT-E-GPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLGP 75 (726)
T ss_pred cCHHHHHHHhCC-C-CCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhcc
Confidence 345666666653 3 34778899999999876654 33321112238999999999999999999887764
No 225
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.70 E-value=0.098 Score=58.61 Aligned_cols=43 Identities=33% Similarity=0.451 Sum_probs=30.5
Q ss_pred ccCCChHHHHHHHHHHHc--CCeEEEeccCCChhhchHHHHHHHh
Q 035699 327 KTLPIYPFREELLQAVSE--YPVLVIVGETGSGKTTQIPQYLYEA 369 (633)
Q Consensus 327 ~~LPi~~~q~~il~al~~--~~~vIi~a~TGSGKTt~lp~~Lle~ 369 (633)
..|.+.+.+...+..+.+ +-.++|+|||||||||.+...|.+.
T Consensus 238 ~~Lg~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~l 282 (500)
T COG2804 238 EKLGMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSEL 282 (500)
T ss_pred HHhCCCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 345666666555555544 4568889999999999887776654
No 226
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.65 E-value=0.073 Score=57.53 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=24.0
Q ss_pred cCCeEEEeccCCChhhchHHHHHHHhccccCCeeeec
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCT 380 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilit 380 (633)
.+..++|+|||||||||.+-..+.......+++|+.+
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti 157 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI 157 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE
Confidence 4578999999999999987654433211223455544
No 227
>PRK10867 signal recognition particle protein; Provisional
Probab=93.58 E-value=0.1 Score=58.15 Aligned_cols=57 Identities=25% Similarity=0.342 Sum_probs=39.3
Q ss_pred CeEEEeccCCChhhchHHHHHHHhccccCC--eeeecchhHHHHHHHHHHHHHHhCCcc
Q 035699 346 PVLVIVGETGSGKTTQIPQYLYEAGYTKQG--KIGCTQLRRVAAMSVAARVSQEMGVKL 402 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~Lle~~~~~~g--kilitqPrR~aA~qva~rva~e~g~~v 402 (633)
.+++++|++||||||.+..+........+. -++.+-+.|.+|.......+...|+++
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v 159 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPV 159 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeE
Confidence 578889999999999866554432111122 345578899988766677777777654
No 228
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=93.58 E-value=0.056 Score=48.01 Aligned_cols=25 Identities=44% Similarity=0.489 Sum_probs=20.0
Q ss_pred CCeEEEeccCCChhhchHHHHHHHh
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLYEA 369 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Lle~ 369 (633)
+..+++.||+||||||.+-..+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc
Confidence 4678999999999998877665543
No 229
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=93.54 E-value=0.49 Score=54.01 Aligned_cols=72 Identities=19% Similarity=0.391 Sum_probs=59.4
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCC-----ccccC-CCCC
Q 035699 521 ILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATN-----IAETS-LTID 594 (633)
Q Consensus 521 iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATd-----IAerG-LdIp 594 (633)
+||++||++-+..+++.+....... +++.++.++|+++-..|...+.. | ..|||||+ ..+++ ++..
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~----~~~~~~~i~GG~~~~~q~~~l~~---~-~~ivVaTPGRllD~i~~~~l~l~ 173 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNL----GGLRVAVVYGGVSIRKQIEALKR---G-VDIVVATPGRLLDLIKRGKLDLS 173 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhc----CCccEEEEECCCCHHHHHHHHhc---C-CCEEEECccHHHHHHHcCCcchh
Confidence 9999999999999999998865332 26779999999999998877766 4 78999997 56666 8888
Q ss_pred CccEEE
Q 035699 595 GIKYVI 600 (633)
Q Consensus 595 ~V~~VI 600 (633)
+|.++|
T Consensus 174 ~v~~lV 179 (513)
T COG0513 174 GVETLV 179 (513)
T ss_pred hcCEEE
Confidence 888776
No 230
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.51 E-value=0.094 Score=51.44 Aligned_cols=27 Identities=44% Similarity=0.528 Sum_probs=21.6
Q ss_pred HHHHHHcCCeEEEeccCCChhhchHHH
Q 035699 338 LLQAVSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 338 il~al~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+-.++..+.+++|+|+|||||||.+-.
T Consensus 18 l~~~v~~g~~i~I~G~tGSGKTTll~a 44 (186)
T cd01130 18 LWLAVEARKNILISGGTGSGKTTLLNA 44 (186)
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHHH
Confidence 344566788999999999999987644
No 231
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=93.47 E-value=5.9 Score=52.34 Aligned_cols=231 Identities=13% Similarity=0.108 Sum_probs=112.5
Q ss_pred cCCChHHHHHHHHHHHc--CCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccce
Q 035699 328 TLPIYPFREELLQAVSE--YPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHE 405 (633)
Q Consensus 328 ~LPi~~~q~~il~al~~--~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~ 405 (633)
.+++.+-|.+.+..+.. +++++|+|+.|+||||.+-..+. ..-..+.+|+++.|+--+|..+.+ ..|.... +
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~-~~~~~G~~V~~lAPTgrAA~~L~e----~~g~~A~-T 500 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLH-LASEQGYEIQIITAGSLSAQELRQ----KIPRLAS-T 500 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHH-HHHhcCCeEEEEeCCHHHHHHHHH----Hhcchhh-h
Confidence 34555666666666655 48999999999999987544332 111123389999999877765544 3232211 0
Q ss_pred EeeeeecccccCCCCcEEEeCchHHHHHHhcCCCCCCceeee-ee------------cc--cCCCccEEEeeccc--C--
Q 035699 406 VGYSIRFEDCTSDKTVLKYMTDGMLLREIVLEPSLESYSVLI-DL------------IN--YRPDLKLLISSATL--D-- 466 (633)
Q Consensus 406 VGy~ir~e~~~s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-di------------~~--~rpdlklil~SAT~--~-- 466 (633)
+. +....... . ....|-..++ .....|...++|| |. +. ..++.|+||+.-+- .
T Consensus 501 i~---~~l~~l~~-~-~~~~tv~~fl---~~~~~l~~~~vlIVDEAsMl~~~~~~~Ll~~a~~~garvVlvGD~~QL~sV 572 (1960)
T TIGR02760 501 FI---TWVKNLFN-D-DQDHTVQGLL---DKSSPFSNKDIFVVDEANKLSNNELLKLIDKAEQHNSKLILLNDSAQRQGM 572 (1960)
T ss_pred HH---HHHHhhcc-c-ccchhHHHhh---cccCCCCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCEEEEEcChhhcCcc
Confidence 00 00000000 0 0011111122 1112334444444 22 22 13467788776443 1
Q ss_pred -H-HhHhhhh-CCCCEEEeCC---eeeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHH
Q 035699 467 -A-ENFSDYF-GSAPIFKIPR---RRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQ 540 (633)
Q Consensus 467 -~-~~~s~~f-~~~pii~i~g---r~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~ 540 (633)
+ .-|..+- .+.|.+.... ..-++ ........+.+..+....+.+.. .....+||.+|..++..+...++.
T Consensus 573 ~aG~~f~~L~~~gv~t~~l~~i~rq~~~v--~i~~~~~~~r~~~ia~~y~~L~~--~r~~tliv~~t~~dr~~Ln~~iR~ 648 (1960)
T TIGR02760 573 SAGSAIDLLKEGGVTTYAWVDTKQQKASV--EISEAVDKLRVDYIASAWLDLTP--DRQNSQVLATTHREQQDLTQIIRN 648 (1960)
T ss_pred ccchHHHHHHHCCCcEEEeecccccCcce--eeeccCchHHHHHHHHHHHhccc--ccCceEEEcCCcHHHHHHHHHHHH
Confidence 1 2233222 2344444322 11222 12222222323333444443332 234589999999999999999998
Q ss_pred hhcccCCC-CCceEEEecc-CCCCHHHHHHHhCCCCCCC
Q 035699 541 RTRGLGTK-IAELIICPIY-GNLPTELQAKIFEPTPEGA 577 (633)
Q Consensus 541 ~~~~l~~~-~~~~~v~~lH-g~l~~~~R~~i~~~f~~g~ 577 (633)
.+..-|.- ..++.+..|- .+|+..++... ..|++|.
T Consensus 649 ~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~Gd 686 (1960)
T TIGR02760 649 ALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQGM 686 (1960)
T ss_pred HHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCCC
Confidence 77543331 2244444443 35666666533 4555553
No 232
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.35 E-value=0.11 Score=56.59 Aligned_cols=29 Identities=31% Similarity=0.628 Sum_probs=21.5
Q ss_pred HHHHHH-cCCeEEEeccCCChhhchHHHHH
Q 035699 338 LLQAVS-EYPVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 338 il~al~-~~~~vIi~a~TGSGKTt~lp~~L 366 (633)
+..++. .+..++|+|||||||||.+-..+
T Consensus 126 ~~~~~~~~~glilI~GpTGSGKTTtL~aLl 155 (358)
T TIGR02524 126 IIDAIAPQEGIVFITGATGSGKSTLLAAII 155 (358)
T ss_pred HHHHHhccCCEEEEECCCCCCHHHHHHHHH
Confidence 344444 56789999999999999875443
No 233
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.34 E-value=0.068 Score=56.24 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=19.8
Q ss_pred CCeEEEeccCCChhhchHHHHHHHh
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLYEA 369 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Lle~ 369 (633)
+-.|+|.|||||||||.+...+-.-
T Consensus 125 ~GLILVTGpTGSGKSTTlAamId~i 149 (353)
T COG2805 125 RGLILVTGPTGSGKSTTLAAMIDYI 149 (353)
T ss_pred CceEEEeCCCCCcHHHHHHHHHHHH
Confidence 4568889999999999887766543
No 234
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=93.11 E-value=0.2 Score=59.97 Aligned_cols=78 Identities=13% Similarity=0.196 Sum_probs=62.7
Q ss_pred HHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCc
Q 035699 507 VTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNI 586 (633)
Q Consensus 507 ~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdI 586 (633)
..+..++.....+.+++.+||..-+..+++.|+.....-+ .....+. +||.||..++..+++.+.+|..+|||+|+-
T Consensus 114 g~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~--~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 114 GLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAG--SLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred HHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcC--Ccceeee-eccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 3444444445558899999999999999999998765544 2355555 999999999999999999999999999975
Q ss_pred c
Q 035699 587 A 587 (633)
Q Consensus 587 A 587 (633)
.
T Consensus 191 F 191 (1187)
T COG1110 191 F 191 (1187)
T ss_pred H
Confidence 3
No 235
>PF12846 AAA_10: AAA-like domain
Probab=93.10 E-value=0.073 Score=55.00 Aligned_cols=43 Identities=26% Similarity=0.285 Sum_probs=30.0
Q ss_pred CCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAM 388 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~ 388 (633)
+.+++|+|+||||||+.+-..+.. .+..+..++++-|......
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~-~~~~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQ-LIRRGPRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH-HHHcCCCEEEEcCCchHHH
Confidence 346889999999999877644433 3444457888888755543
No 236
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=93.06 E-value=0.17 Score=54.85 Aligned_cols=53 Identities=17% Similarity=0.168 Sum_probs=36.2
Q ss_pred CeEEEeccCCChhhchHHHHHHHhc-cccCCeeeecchhHHHHHHHHHHHHHHh
Q 035699 346 PVLVIVGETGSGKTTQIPQYLYEAG-YTKQGKIGCTQLRRVAAMSVAARVSQEM 398 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~Lle~~-~~~~gkilitqPrR~aA~qva~rva~e~ 398 (633)
++++|.|.+|||||..+...+.... ...+..++++.+...+...+...++...
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~ 55 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKY 55 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhc
Confidence 5789999999999976655554431 2233377788888777776666665543
No 237
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=92.95 E-value=0.47 Score=56.09 Aligned_cols=78 Identities=18% Similarity=0.229 Sum_probs=65.4
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCC-ccccCCCCCCc
Q 035699 518 IGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATN-IAETSLTIDGI 596 (633)
Q Consensus 518 ~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATd-IAerGLdIp~V 596 (633)
..+++|.+||..-+...++.++..+..+ ++.+..+||+++..++..++.....|...|||+|. .....+.+.++
T Consensus 310 g~q~lilaPT~~LA~Q~~~~l~~l~~~~-----~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l 384 (681)
T PRK10917 310 GYQAALMAPTEILAEQHYENLKKLLEPL-----GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNL 384 (681)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhhc-----CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhccc
Confidence 4689999999999999999998875332 57899999999999999999998899999999997 34445667788
Q ss_pred cEEE
Q 035699 597 KYVI 600 (633)
Q Consensus 597 ~~VI 600 (633)
.+||
T Consensus 385 ~lvV 388 (681)
T PRK10917 385 GLVI 388 (681)
T ss_pred ceEE
Confidence 7766
No 238
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.52 E-value=0.16 Score=52.88 Aligned_cols=31 Identities=29% Similarity=0.427 Sum_probs=22.0
Q ss_pred HHHHHHHc-CCeEEEeccCCChhhchHHHHHH
Q 035699 337 ELLQAVSE-YPVLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 337 ~il~al~~-~~~vIi~a~TGSGKTt~lp~~Ll 367 (633)
.+..++.. +..++|+|+|||||||.+-..+.
T Consensus 71 ~l~~~~~~~~GlilisG~tGSGKTT~l~all~ 102 (264)
T cd01129 71 IFRKLLEKPHGIILVTGPTGSGKTTTLYSALS 102 (264)
T ss_pred HHHHHHhcCCCEEEEECCCCCcHHHHHHHHHh
Confidence 34445543 45789999999999998765443
No 239
>PRK05580 primosome assembly protein PriA; Validated
Probab=92.39 E-value=0.25 Score=58.36 Aligned_cols=74 Identities=15% Similarity=0.141 Sum_probs=61.9
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCcc
Q 035699 518 IGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIK 597 (633)
Q Consensus 518 ~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~ 597 (633)
.+++||.+|+..-+..+++.|++.+ +..+..+||+++..+|..++.....|..+|||+|.-+- -+.+.++.
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~f--------g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~ 260 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARF--------GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLG 260 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh--------CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCC
Confidence 4689999999999999999998764 45789999999999999998888888899999997443 25567777
Q ss_pred EEE
Q 035699 598 YVI 600 (633)
Q Consensus 598 ~VI 600 (633)
+||
T Consensus 261 liV 263 (679)
T PRK05580 261 LII 263 (679)
T ss_pred EEE
Confidence 766
No 240
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=92.36 E-value=0.15 Score=54.30 Aligned_cols=42 Identities=29% Similarity=0.331 Sum_probs=27.4
Q ss_pred HHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchh
Q 035699 340 QAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLR 383 (633)
Q Consensus 340 ~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPr 383 (633)
-++..+.+++|+|+|||||||.+-..+- . +....+++++..+
T Consensus 139 ~~v~~~~~ili~G~tGsGKTTll~al~~-~-~~~~~~iv~ied~ 180 (308)
T TIGR02788 139 LAIASRKNIIISGGTGSGKTTFLKSLVD-E-IPKDERIITIEDT 180 (308)
T ss_pred HHhhCCCEEEEECCCCCCHHHHHHHHHc-c-CCccccEEEEcCc
Confidence 4566788999999999999987744332 2 2223355555433
No 241
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=92.31 E-value=0.093 Score=42.56 Aligned_cols=18 Identities=44% Similarity=0.623 Sum_probs=15.4
Q ss_pred CCeEEEeccCCChhhchH
Q 035699 345 YPVLVIVGETGSGKTTQI 362 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~l 362 (633)
+.+++|.|++||||||.+
T Consensus 23 g~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLL 40 (62)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 347999999999999874
No 242
>PRK04296 thymidine kinase; Provisional
Probab=92.01 E-value=0.14 Score=50.49 Aligned_cols=37 Identities=24% Similarity=0.238 Sum_probs=27.1
Q ss_pred CCeEEEeccCCChhhchHHHHHHHhccccCCeeeecch
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQL 382 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqP 382 (633)
+..++++|++||||||.+...+.... ..+.++++.-|
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~-~~g~~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYE-ERGMKVLVFKP 38 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHH-HcCCeEEEEec
Confidence 35688999999999999888877652 22336776655
No 243
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=91.95 E-value=0.28 Score=55.18 Aligned_cols=56 Identities=20% Similarity=0.306 Sum_probs=50.2
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCC
Q 035699 521 ILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATN 585 (633)
Q Consensus 521 iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATd 585 (633)
.|||.||++-+..+...|...++ .+++.+..|-|||....|.+++.. ...|||||+
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~-----~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATP 321 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAE-----KTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATP 321 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhcc-----ccCeEEEEeechhHHHHHHHHHhc----CCCEEEecc
Confidence 79999999999999999998764 368999999999999999999977 357999998
No 244
>PRK10436 hypothetical protein; Provisional
Probab=91.94 E-value=0.2 Score=56.43 Aligned_cols=38 Identities=29% Similarity=0.417 Sum_probs=24.6
Q ss_pred ChHHHHHHH-HHHH-cCCeEEEeccCCChhhchHHHHHHH
Q 035699 331 IYPFREELL-QAVS-EYPVLVIVGETGSGKTTQIPQYLYE 368 (633)
Q Consensus 331 i~~~q~~il-~al~-~~~~vIi~a~TGSGKTt~lp~~Lle 368 (633)
+.+.+.+.+ .++. .+-.++|+|||||||||.+...|..
T Consensus 202 ~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~a~l~~ 241 (462)
T PRK10436 202 MTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLYSALQT 241 (462)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHHHHHHHh
Confidence 344333333 3333 4567899999999999987554443
No 245
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=91.75 E-value=0.25 Score=56.36 Aligned_cols=61 Identities=18% Similarity=0.428 Sum_probs=54.6
Q ss_pred hhhhHhhhhhhhhhcCchhHHHHHHHHHhhccCChHHHHHHhhhcCCCCCHhHHHHHHHHHhhC
Q 035699 6 NLKTWVSDKLISLLGYSQPAVVQYVIGLSKQALSSADLETKLQEFEFSSTTETRAFAQEIFARV 69 (633)
Q Consensus 6 ~l~~wvsD~l~~llG~sd~~~~~~~~~~a~~a~s~~~l~~~L~~~~~~~~~~~~~Fa~el~~r~ 69 (633)
-++-||+-+++..||.-+.|+|+||+.--.+-+||..|++-|... .+-++..|+..+|...
T Consensus 596 rirpwV~KKIiEflGeeE~tLVdFI~s~i~~h~~~q~iL~dl~~i---lDEdAE~FV~KmWRlL 656 (668)
T KOG2253|consen 596 RIRPWVNKKIIEFLGEEEDTLVDFICSNIRQHSSPQQILDDLAMI---LDEDAEVFVVKMWRLL 656 (668)
T ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCHHHHHHHHHHH---HhcchHHHHHHHHHHH
Confidence 458899999999999999999999999999999999999998876 2345789999999875
No 246
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=91.65 E-value=0.19 Score=55.06 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=18.1
Q ss_pred HcCCeEEEeccCCChhhchHHHH
Q 035699 343 SEYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
..+..++|+|+|||||||.+-..
T Consensus 147 ~~~GlilI~G~TGSGKTT~l~al 169 (372)
T TIGR02525 147 PAAGLGLICGETGSGKSTLAASI 169 (372)
T ss_pred hcCCEEEEECCCCCCHHHHHHHH
Confidence 34567899999999999976443
No 247
>PRK06526 transposase; Provisional
Probab=91.61 E-value=0.16 Score=52.72 Aligned_cols=43 Identities=21% Similarity=0.193 Sum_probs=27.7
Q ss_pred HHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecch
Q 035699 339 LQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQL 382 (633)
Q Consensus 339 l~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqP 382 (633)
.+++..+.+++++||+|+|||+.......+. ...+.+++++..
T Consensus 92 ~~fi~~~~nlll~Gp~GtGKThLa~al~~~a-~~~g~~v~f~t~ 134 (254)
T PRK06526 92 LDFVTGKENVVFLGPPGTGKTHLAIGLGIRA-CQAGHRVLFATA 134 (254)
T ss_pred CchhhcCceEEEEeCCCCchHHHHHHHHHHH-HHCCCchhhhhH
Confidence 4567788999999999999997644433332 122225655444
No 248
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=91.51 E-value=0.32 Score=61.20 Aligned_cols=63 Identities=13% Similarity=0.188 Sum_probs=44.9
Q ss_pred HHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhcccc--CCeeeecchhHHHHHHHHHHHHHHh
Q 035699 334 FREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTK--QGKIGCTQLRRVAAMSVAARVSQEM 398 (633)
Q Consensus 334 ~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~--~gkilitqPrR~aA~qva~rva~e~ 398 (633)
-|..++. ..+.+++|.|..|||||+.+..-+....... ..+++|++=|+.||..+..|+...+
T Consensus 5 ~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l 69 (1232)
T TIGR02785 5 EQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEAL 69 (1232)
T ss_pred HHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHH
Confidence 3555554 3567799999999999998776554432211 1279999999999988888777654
No 249
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=91.45 E-value=0.28 Score=59.32 Aligned_cols=47 Identities=26% Similarity=0.227 Sum_probs=31.2
Q ss_pred HcCCeEEEeccCCChhhchHHHHHHHhccccCC--eeeecchhHHHHHHH
Q 035699 343 SEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQG--KIGCTQLRRVAAMSV 390 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~g--kilitqPrR~aA~qv 390 (633)
.++.++.+.=+||||||......+++. +..-| +++|++|+...-..+
T Consensus 57 ~~~~n~~~~M~TGtGKT~~~~~~i~~l-~~~~~~~~fii~vp~~aI~egv 105 (986)
T PRK15483 57 DDKANIDIKMETGTGKTYVYTRLMYEL-HQKYGLFKFIIVVPTPAIKEGT 105 (986)
T ss_pred CccceEEEEeCCCCCHHHHHHHHHHHH-HHHcCCcEEEEEeCCHHHHHHH
Confidence 334678999999999998655554443 22212 789999986654443
No 250
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=91.34 E-value=0.19 Score=51.23 Aligned_cols=51 Identities=20% Similarity=0.267 Sum_probs=34.1
Q ss_pred HHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARV 394 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rv 394 (633)
+..+..++|.|++|||||+...+++.+.. ..+.+++++.. .+.+.++..++
T Consensus 18 ~~~gs~~lI~G~pGsGKT~la~~~l~~~~-~~ge~~lyvs~-ee~~~~i~~~~ 68 (237)
T TIGR03877 18 IPERNVVLLSGGPGTGKSIFSQQFLWNGL-QMGEPGIYVAL-EEHPVQVRRNM 68 (237)
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCcEEEEEe-eCCHHHHHHHH
Confidence 33568899999999999999988888753 33335555432 33444555543
No 251
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=91.34 E-value=0.46 Score=48.76 Aligned_cols=24 Identities=42% Similarity=0.578 Sum_probs=19.0
Q ss_pred CCeEEEeccCCChhhchHHHHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLYE 368 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Lle 368 (633)
...++++|++||||||.+-.++..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHh
Confidence 347899999999999887666544
No 252
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=91.20 E-value=0.17 Score=45.27 Aligned_cols=19 Identities=42% Similarity=0.698 Sum_probs=15.0
Q ss_pred eEEEeccCCChhhchHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~ 365 (633)
+++|.|++||||||..-..
T Consensus 1 vI~I~G~~gsGKST~a~~L 19 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKEL 19 (121)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHH
Confidence 4789999999999765433
No 253
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=91.19 E-value=0.23 Score=50.26 Aligned_cols=43 Identities=9% Similarity=0.029 Sum_probs=30.2
Q ss_pred HHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecc
Q 035699 339 LQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQ 381 (633)
Q Consensus 339 l~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitq 381 (633)
+.-+..++.++|.|+||+|||+...++++......+.++++..
T Consensus 7 ~~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s 49 (242)
T cd00984 7 TGGLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS 49 (242)
T ss_pred hcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence 3345667899999999999998888777665333233665543
No 254
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=91.01 E-value=0.21 Score=48.25 Aligned_cols=45 Identities=22% Similarity=0.261 Sum_probs=28.9
Q ss_pred eEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAAR 393 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~r 393 (633)
+++|.|++|||||+...++++... ..+.+++++.. .+.+.++..+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~-~~g~~v~~~s~-e~~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL-ARGEPGLYVTL-EESPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH-HCCCcEEEEEC-CCCHHHHHHH
Confidence 378899999999998888877653 33335555433 2334444443
No 255
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=90.97 E-value=0.28 Score=61.25 Aligned_cols=58 Identities=16% Similarity=0.216 Sum_probs=44.6
Q ss_pred HHHcCCeEEEeccCCChhhchHHHHHHHhccccCC----eeeecchhHHHHHHHHHHHHHHh
Q 035699 341 AVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQG----KIGCTQLRRVAAMSVAARVSQEM 398 (633)
Q Consensus 341 al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~g----kilitqPrR~aA~qva~rva~e~ 398 (633)
+.-.+++++|.|..|||||..+..-++......+| .|+|+..|+.||..+..|+...+
T Consensus 12 ~~~~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~L 73 (1139)
T COG1074 12 ASPPGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDRL 73 (1139)
T ss_pred hcCCCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHHHH
Confidence 34456789999999999998877655544333222 89999999999999988887655
No 256
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.97 E-value=0.4 Score=54.61 Aligned_cols=74 Identities=16% Similarity=0.153 Sum_probs=60.8
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCcc
Q 035699 518 IGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIK 597 (633)
Q Consensus 518 ~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~ 597 (633)
.+++||.+|+..-+..+++.|++.+ +..+..+||+++..+|..++.....|..+|||+|.-+- -+.+.++.
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f--------~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal-f~p~~~l~ 95 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRF--------GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL-FLPFKNLG 95 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh--------CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH-cCcccCCC
Confidence 4689999999999999999998764 35678899999999999998888888899999997543 34566777
Q ss_pred EEE
Q 035699 598 YVI 600 (633)
Q Consensus 598 ~VI 600 (633)
+||
T Consensus 96 lII 98 (505)
T TIGR00595 96 LII 98 (505)
T ss_pred EEE
Confidence 655
No 257
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=90.91 E-value=0.88 Score=55.53 Aligned_cols=78 Identities=13% Similarity=0.158 Sum_probs=64.0
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCC-ccccCCCCCCc
Q 035699 518 IGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATN-IAETSLTIDGI 596 (633)
Q Consensus 518 ~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATd-IAerGLdIp~V 596 (633)
..+++|.+||..-+...++.+...+.. -++.+..+||..+..++..++.....|...|||+|. ++...+.+.++
T Consensus 500 g~qvlvLvPT~~LA~Q~~~~f~~~~~~-----~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L 574 (926)
T TIGR00580 500 GKQVAVLVPTTLLAQQHFETFKERFAN-----FPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDL 574 (926)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhcc-----CCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccC
Confidence 368999999999999999999887532 256788999999999999999888889999999998 44455677777
Q ss_pred cEEE
Q 035699 597 KYVI 600 (633)
Q Consensus 597 ~~VI 600 (633)
.+||
T Consensus 575 ~llV 578 (926)
T TIGR00580 575 GLLI 578 (926)
T ss_pred CEEE
Confidence 7655
No 258
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=90.91 E-value=0.27 Score=56.77 Aligned_cols=39 Identities=31% Similarity=0.462 Sum_probs=25.0
Q ss_pred CCChHHHHH-HHHHHH-cCCeEEEeccCCChhhchHHHHHH
Q 035699 329 LPIYPFREE-LLQAVS-EYPVLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 329 LPi~~~q~~-il~al~-~~~~vIi~a~TGSGKTt~lp~~Ll 367 (633)
|-+.+.+.+ +..++. .+-.++|+|||||||||.+...+.
T Consensus 298 lg~~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl~a~l~ 338 (564)
T TIGR02538 298 LGFEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSLYTALN 338 (564)
T ss_pred cCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHH
Confidence 444444333 344444 356788999999999998755443
No 259
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=90.86 E-value=0.13 Score=56.89 Aligned_cols=44 Identities=27% Similarity=0.253 Sum_probs=31.5
Q ss_pred cCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHH
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAM 388 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~ 388 (633)
..+.++|.|+||||||+.++..+... ...+++++|+-|..+...
T Consensus 41 ~~~h~~i~g~tGsGKt~~i~~l~~~~-~~~~~~~vi~D~kg~~~~ 84 (410)
T cd01127 41 EEAHTMIIGTTGTGKTTQIRELLASI-RARGDRAIIYDPNGGFVS 84 (410)
T ss_pred hhccEEEEcCCCCCHHHHHHHHHHHH-HhcCCCEEEEeCCcchhH
Confidence 35578999999999999877665442 334457888888776543
No 260
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=90.85 E-value=0.21 Score=46.19 Aligned_cols=33 Identities=36% Similarity=0.492 Sum_probs=22.9
Q ss_pred eEEEeccCCChhhchHHHHHHHhccccCCeeeec
Q 035699 347 VLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCT 380 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilit 380 (633)
+++|.|++|||||+.+..++..... .++.+++.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~ 33 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT-KGGKVVYV 33 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh-cCCEEEEE
Confidence 3688999999999887776665432 34455554
No 261
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=90.82 E-value=0.27 Score=51.08 Aligned_cols=31 Identities=23% Similarity=0.243 Sum_probs=25.6
Q ss_pred HHHHHHHHHHcCCeEEEeccCCChhhchHHH
Q 035699 334 FREELLQAVSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 334 ~q~~il~al~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
..+.++.++..+..+++.|++|||||+..-.
T Consensus 10 l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~ 40 (262)
T TIGR02640 10 VTSRALRYLKSGYPVHLRGPAGTGKTTLAMH 40 (262)
T ss_pred HHHHHHHHHhcCCeEEEEcCCCCCHHHHHHH
Confidence 4566788899999999999999999976543
No 262
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=90.64 E-value=0.45 Score=56.76 Aligned_cols=62 Identities=24% Similarity=0.275 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHH
Q 035699 333 PFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVS 395 (633)
Q Consensus 333 ~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva 395 (633)
.||++++.++...+..+|.|=+||||||.+...+.-- +..+++|++|.-|-.|+-++..++.
T Consensus 673 dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL-~~~gkkVLLtsyThsAVDNILiKL~ 734 (1100)
T KOG1805|consen 673 DQRQALLKALAAEDYALILGMPGTGKTTTISLLIKIL-VALGKKVLLTSYTHSAVDNILIKLK 734 (1100)
T ss_pred HHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHH-HHcCCeEEEEehhhHHHHHHHHHHh
Confidence 4788899999999999999999999999866544322 3445599999999998888766553
No 263
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=90.44 E-value=0.35 Score=46.45 Aligned_cols=52 Identities=27% Similarity=0.335 Sum_probs=29.6
Q ss_pred eEEEeccCCChhhchHHHHHHHhccccCCeeee--cchhHHHHHHHHHHHHHHhC
Q 035699 347 VLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGC--TQLRRVAAMSVAARVSQEMG 399 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkili--tqPrR~aA~qva~rva~e~g 399 (633)
++++.|++||||||....+..... ..+.++++ +.++|..+.......+..+|
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~-~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~ 55 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK-KKGKKVLLVAADTYRPAAIEQLRVLGEQVG 55 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-HCCCcEEEEEcCCCChHHHHHHHHhcccCC
Confidence 578899999999988655544321 12234543 45666544443333444444
No 264
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.41 E-value=0.25 Score=52.75 Aligned_cols=30 Identities=37% Similarity=0.457 Sum_probs=25.4
Q ss_pred HHHHHHcCCeEEEeccCCChhhchHHHHHH
Q 035699 338 LLQAVSEYPVLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 338 il~al~~~~~vIi~a~TGSGKTt~lp~~Ll 367 (633)
+..++..+..++++|+|||||||.+-..+.
T Consensus 136 L~~~ie~~~siii~G~t~sGKTt~lnall~ 165 (312)
T COG0630 136 LWLAIEARKSIIICGGTASGKTTLLNALLD 165 (312)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHHHHHH
Confidence 778899999999999999999987655443
No 265
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=90.34 E-value=0.27 Score=48.08 Aligned_cols=43 Identities=23% Similarity=0.217 Sum_probs=24.0
Q ss_pred HHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecch
Q 035699 339 LQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQL 382 (633)
Q Consensus 339 l~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqP 382 (633)
..++.+++++++.|+||+|||........+. ...+..++++..
T Consensus 41 ~~~~~~~~~l~l~G~~G~GKThLa~ai~~~~-~~~g~~v~f~~~ 83 (178)
T PF01695_consen 41 LEFIENGENLILYGPPGTGKTHLAVAIANEA-IRKGYSVLFITA 83 (178)
T ss_dssp H-S-SC--EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEH
T ss_pred CCCcccCeEEEEEhhHhHHHHHHHHHHHHHh-ccCCcceeEeec
Confidence 3556778899999999999997644443332 222225555543
No 266
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=90.29 E-value=0.22 Score=45.86 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=17.6
Q ss_pred eEEEeccCCChhhchHHHHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQYLYE 368 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~Lle 368 (633)
+|+++|++||||||.+-.+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999876665543
No 267
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=90.20 E-value=0.53 Score=51.96 Aligned_cols=56 Identities=32% Similarity=0.466 Sum_probs=41.6
Q ss_pred CeEEEeccCCChhhchHHH---HHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCccc
Q 035699 346 PVLVIVGETGSGKTTQIPQ---YLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLG 403 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~---~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg 403 (633)
.+|+.+|=-||||||.... |+...+ .+.-++++-..|-+|....+.+++..++++-
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~lkk~~--~kvllVaaD~~RpAA~eQL~~La~q~~v~~f 159 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYLKKKG--KKVLLVAADTYRPAAIEQLKQLAEQVGVPFF 159 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHHHHHcC--CceEEEecccCChHHHHHHHHHHHHcCCcee
Confidence 4688899999999998554 444321 1114667888999999999999998887763
No 268
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=90.14 E-value=0.35 Score=44.68 Aligned_cols=46 Identities=24% Similarity=0.276 Sum_probs=27.2
Q ss_pred HHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhH
Q 035699 335 REELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRR 384 (633)
Q Consensus 335 q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR 384 (633)
-+.+...+..+.+|++.|+-|+||||..--++...+. .--|+.||-
T Consensus 5 a~~l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~----~~~V~SPTF 50 (123)
T PF02367_consen 5 AKKLAQILKPGDVILLSGDLGAGKTTFVRGLARALGI----DEEVTSPTF 50 (123)
T ss_dssp HHHHHHHHSS-EEEEEEESTTSSHHHHHHHHHHHTT------S----TTT
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHHcCC----CCCcCCCCe
Confidence 3556677888899999999999999765433333222 225677764
No 269
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=90.11 E-value=0.34 Score=45.34 Aligned_cols=45 Identities=22% Similarity=0.282 Sum_probs=30.2
Q ss_pred HHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhH
Q 035699 336 EELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRR 384 (633)
Q Consensus 336 ~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR 384 (633)
..+...+..+.++++.|+.|+||||.+-.++...+. .--|+.||-
T Consensus 13 ~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~----~~~v~SPTf 57 (133)
T TIGR00150 13 KAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGI----QGNVTSPTF 57 (133)
T ss_pred HHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCC----CCcccCCCe
Confidence 345566778889999999999999766444433322 123667773
No 270
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=89.98 E-value=0.051 Score=53.32 Aligned_cols=106 Identities=16% Similarity=0.130 Sum_probs=47.3
Q ss_pred EEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccceEeeeee------cccc-cCCCCc
Q 035699 349 VIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIR------FEDC-TSDKTV 421 (633)
Q Consensus 349 Ii~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~VGy~ir------~e~~-~s~~t~ 421 (633)
||+|+-|-|||+++.+.+.........+|+||.|+...+..+.+.+...+. ..||... ...+ ...+..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~ 75 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLK-----ALGYKEEKKKRIGQIIKLRFNKQR 75 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC-------------------------------CCC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhcc-----ccccccccccccccccccccccce
Confidence 578999999999887765443222223899999999988887765443321 1122110 0001 123567
Q ss_pred EEEeCchHHHHHHhcCCCCCCceeee-eecccC---------CCccEEEeeccc
Q 035699 422 LKYMTDGMLLREIVLEPSLESYSVLI-DLINYR---------PDLKLLISSATL 465 (633)
Q Consensus 422 Iiv~TpGrLL~~l~~~~~L~~~s~vI-di~~~r---------pdlklil~SAT~ 465 (633)
|.|..|..++..- ...+++| |.+... .....++||-|+
T Consensus 76 i~f~~Pd~l~~~~------~~~DlliVDEAAaIp~p~L~~ll~~~~~vv~stTi 123 (177)
T PF05127_consen 76 IEFVAPDELLAEK------PQADLLIVDEAAAIPLPLLKQLLRRFPRVVFSTTI 123 (177)
T ss_dssp --B--HHHHCCT----------SCEEECTGGGS-HHHHHHHHCCSSEEEEEEEB
T ss_pred EEEECCHHHHhCc------CCCCEEEEechhcCCHHHHHHHHhhCCEEEEEeec
Confidence 8888888776431 1224444 544322 234577888888
No 271
>PRK05973 replicative DNA helicase; Provisional
Probab=89.95 E-value=0.24 Score=50.86 Aligned_cols=45 Identities=20% Similarity=0.103 Sum_probs=33.8
Q ss_pred HHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeec
Q 035699 335 REELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCT 380 (633)
Q Consensus 335 q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilit 380 (633)
.+++..-+..+..++|.|++|+|||+...+++.+.. ..+.++++.
T Consensus 54 ~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a-~~Ge~vlyf 98 (237)
T PRK05973 54 AEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAM-KSGRTGVFF 98 (237)
T ss_pred HHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHH-hcCCeEEEE
Confidence 355667788889999999999999998888887653 233355554
No 272
>PRK13764 ATPase; Provisional
Probab=89.92 E-value=0.31 Score=56.41 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=20.0
Q ss_pred HHHHH-HcCCeEEEeccCCChhhchHHH
Q 035699 338 LLQAV-SEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 338 il~al-~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
++..+ ..+.+++|+|+|||||||.+-.
T Consensus 249 l~~~l~~~~~~ILIsG~TGSGKTTll~A 276 (602)
T PRK13764 249 LKERLEERAEGILIAGAPGAGKSTFAQA 276 (602)
T ss_pred HHHHHHhcCCEEEEECCCCCCHHHHHHH
Confidence 33444 3467899999999999987644
No 273
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=89.91 E-value=0.07 Score=58.17 Aligned_cols=40 Identities=28% Similarity=0.260 Sum_probs=30.8
Q ss_pred ccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHH
Q 035699 327 KTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 327 ~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Ll 367 (633)
=.||... |.+.|++|+++-+|+..|+||||||-+|.+|++
T Consensus 22 w~lptdv-qaeaiplilgggdvlmaaetgsgktgaf~lpil 61 (725)
T KOG0349|consen 22 WTLPTDV-QAEAIPLILGGGDVLMAAETGSGKTGAFCLPIL 61 (725)
T ss_pred ccccccc-ccccccEEecCCcEEEEeccCCCCccceehhhH
Confidence 3567654 455668888888899999999999988666554
No 274
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=89.89 E-value=1.3 Score=50.26 Aligned_cols=73 Identities=23% Similarity=0.355 Sum_probs=57.5
Q ss_pred CC-EEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCC-----ccc-cCC
Q 035699 519 GD-ILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATN-----IAE-TSL 591 (633)
Q Consensus 519 g~-iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATd-----IAe-rGL 591 (633)
++ +||-+||++-+..++....+.... ..+..+++||+.|...|..-++.- ..|+|||+ +.+ -.+
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~-----~~~~~~cvyGG~~~~~Q~~~l~~g----vdiviaTPGRl~d~le~g~~ 235 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKS-----LRLRSTCVYGGAPKGPQLRDLERG----VDVVIATPGRLIDLLEEGSL 235 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCC-----CCccEEEEeCCCCccHHHHHHhcC----CcEEEeCChHHHHHHHcCCc
Confidence 54 899999999999999988886533 357899999999999998887643 57999996 334 446
Q ss_pred CCCCccEEE
Q 035699 592 TIDGIKYVI 600 (633)
Q Consensus 592 dIp~V~~VI 600 (633)
+...|.|||
T Consensus 236 ~l~~v~ylV 244 (519)
T KOG0331|consen 236 NLSRVTYLV 244 (519)
T ss_pred cccceeEEE
Confidence 667888876
No 275
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=89.87 E-value=0.16 Score=51.20 Aligned_cols=23 Identities=43% Similarity=0.690 Sum_probs=19.4
Q ss_pred HHHcCCeEEEeccCCChhhchHH
Q 035699 341 AVSEYPVLVIVGETGSGKTTQIP 363 (633)
Q Consensus 341 al~~~~~vIi~a~TGSGKTt~lp 363 (633)
.+..+.+++|+||.||||||.+-
T Consensus 24 ~v~~Gevv~iiGpSGSGKSTlLR 46 (240)
T COG1126 24 SVEKGEVVVIIGPSGSGKSTLLR 46 (240)
T ss_pred eEcCCCEEEEECCCCCCHHHHHH
Confidence 45678999999999999998653
No 276
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.82 E-value=0.26 Score=51.19 Aligned_cols=35 Identities=31% Similarity=0.499 Sum_probs=25.7
Q ss_pred HHHcCCeEEEeccCCChhhchHHHHHHHhccccCC
Q 035699 341 AVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQG 375 (633)
Q Consensus 341 al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~g 375 (633)
++...-.||++|+|||||+|.+...+-...-...|
T Consensus 123 a~~kRGLviiVGaTGSGKSTtmAaMi~yRN~~s~g 157 (375)
T COG5008 123 ALAKRGLVIIVGATGSGKSTTMAAMIGYRNKNSTG 157 (375)
T ss_pred hcccCceEEEECCCCCCchhhHHHHhcccccCCCC
Confidence 55566789999999999999888776544333333
No 277
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=89.55 E-value=0.18 Score=51.38 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=20.4
Q ss_pred HHHcCCeEEEeccCCChhhchHHHH
Q 035699 341 AVSEYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 341 al~~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
.+..+..|.|.||+||||||.+-..
T Consensus 27 ~i~~Ge~vaI~GpSGSGKSTLLnii 51 (226)
T COG1136 27 EIEAGEFVAIVGPSGSGKSTLLNLL 51 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHH
Confidence 3567889999999999999876543
No 278
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=89.48 E-value=0.41 Score=49.99 Aligned_cols=96 Identities=15% Similarity=-0.009 Sum_probs=50.4
Q ss_pred CChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHH---HHHHHhCCcccceE
Q 035699 330 PIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAA---RVSQEMGVKLGHEV 406 (633)
Q Consensus 330 Pi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~---rva~e~g~~vg~~V 406 (633)
..|..|--..-++..++ |+.=.||=|||..+..+..-..+.. ..|-|+.....||..=++ .+-+.+|+. |
T Consensus 77 ~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G-~~V~vvT~NdyLA~RD~~~~~~~y~~LGls----v 149 (266)
T PF07517_consen 77 RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQG-KGVHVVTSNDYLAKRDAEEMRPFYEFLGLS----V 149 (266)
T ss_dssp ---HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTS-S-EEEEESSHHHHHHHHHHHHHHHHHTT------E
T ss_pred cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhc-CCcEEEeccHHHhhccHHHHHHHHHHhhhc----c
Confidence 33344433333444444 7888999999987665544433332 355555555566554333 344445554 5
Q ss_pred eeeeeccccc----CCCCcEEEeCchHHHH
Q 035699 407 GYSIRFEDCT----SDKTVLKYMTDGMLLR 432 (633)
Q Consensus 407 Gy~ir~e~~~----s~~t~Iiv~TpGrLL~ 432 (633)
|+........ .-.++|+|+|.+-+--
T Consensus 150 ~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~f 179 (266)
T PF07517_consen 150 GIITSDMSSEERREAYAADIVYGTNSEFGF 179 (266)
T ss_dssp EEEETTTEHHHHHHHHHSSEEEEEHHHHHH
T ss_pred ccCccccCHHHHHHHHhCcccccccchhhH
Confidence 5433322211 1136799999998764
No 279
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=89.45 E-value=0.55 Score=53.30 Aligned_cols=39 Identities=28% Similarity=0.383 Sum_probs=25.0
Q ss_pred CCChHHHHHHHHH-HHc-CCeEEEeccCCChhhchHHHHHH
Q 035699 329 LPIYPFREELLQA-VSE-YPVLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 329 LPi~~~q~~il~a-l~~-~~~vIi~a~TGSGKTt~lp~~Ll 367 (633)
|-+.+.+.+.+.. +.. +..++|+|||||||||.+-..+.
T Consensus 224 Lg~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~a~L~ 264 (486)
T TIGR02533 224 LGMSPELLSRFERLIRRPHGIILVTGPTGSGKTTTLYAALS 264 (486)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHh
Confidence 4444444444444 333 34688999999999998755443
No 280
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=89.41 E-value=0.31 Score=49.06 Aligned_cols=37 Identities=35% Similarity=0.398 Sum_probs=26.3
Q ss_pred cCCeEEEeccCCChhhchHHHHHHHhccccCCeeeec
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCT 380 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilit 380 (633)
.+.+++|.|++|||||+...+++.......+.+++++
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyv 54 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYV 54 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEE
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEE
Confidence 4688999999999999998888887533213355543
No 281
>PF13173 AAA_14: AAA domain
Probab=89.29 E-value=0.33 Score=44.48 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=22.1
Q ss_pred cCCeEEEeccCCChhhchHHHHHHHh
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYLYEA 369 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~Lle~ 369 (633)
++++++|.|+.|+||||.+-+++...
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~ 26 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDL 26 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999988887654
No 282
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=89.17 E-value=0.23 Score=54.36 Aligned_cols=50 Identities=16% Similarity=0.096 Sum_probs=34.0
Q ss_pred EEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCc
Q 035699 348 LVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVK 401 (633)
Q Consensus 348 vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~ 401 (633)
++|+|+||||||+.+..|-+- ..++.++|+-|.-++....+... +.+|..
T Consensus 2 ~lv~g~tGsGKt~~~viP~ll---~~~~s~vv~D~Kge~~~~t~~~r-~~~G~~ 51 (384)
T cd01126 2 VLVFAPTRSGKGVGFVIPNLL---TWPGSVVVLDPKGENFELTSEHR-RALGRK 51 (384)
T ss_pred eeEecCCCCCCccEEEccchh---cCCCCEEEEccchhHHHHHHHHH-HHcCCe
Confidence 688999999999875444221 12458999999998876665533 344443
No 283
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=89.12 E-value=0.22 Score=53.32 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=28.1
Q ss_pred HHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHh
Q 035699 335 REELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEA 369 (633)
Q Consensus 335 q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~ 369 (633)
=..++.-.+.+...|+.|||||||||.+.-|-++.
T Consensus 263 LNk~LkGhR~GElTvlTGpTGsGKTTFlsEYsLDL 297 (514)
T KOG2373|consen 263 LNKYLKGHRPGELTVLTGPTGSGKTTFLSEYSLDL 297 (514)
T ss_pred HHHHhccCCCCceEEEecCCCCCceeEehHhhHHH
Confidence 34556666677889999999999999988887764
No 284
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=89.11 E-value=0.26 Score=55.21 Aligned_cols=51 Identities=24% Similarity=0.251 Sum_probs=35.0
Q ss_pred CeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCC
Q 035699 346 PVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGV 400 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~ 400 (633)
.+++|+|+||||||+.+..|.+ +..++.++|+-|.-+++...+. ..+..|.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~l---l~~~~s~iV~D~KgEl~~~t~~-~r~~~G~ 95 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNL---LNYPGSMIVTDPKGELYEKTAG-YRKKRGY 95 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHH---HhccCCEEEEECCCcHHHHHHH-HHHHCCC
Confidence 4689999999999987554432 1223479999999988766655 3333443
No 285
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=89.00 E-value=0.32 Score=50.45 Aligned_cols=37 Identities=19% Similarity=0.385 Sum_probs=27.3
Q ss_pred HcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeec
Q 035699 343 SEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCT 380 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilit 380 (633)
-.+..++|.|++|||||+...+++.... ..+.+++++
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a-~~Ge~vlyi 70 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQA-SRGNPVLFV 70 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHH-hCCCcEEEE
Confidence 3578899999999999998888877643 233355553
No 286
>PRK08181 transposase; Validated
Probab=88.95 E-value=0.58 Score=48.97 Aligned_cols=40 Identities=15% Similarity=0.156 Sum_probs=25.3
Q ss_pred HHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecc
Q 035699 341 AVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQ 381 (633)
Q Consensus 341 al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitq 381 (633)
++..+++++++||+|+|||.....+..+. ...+..++++.
T Consensus 102 ~~~~~~nlll~Gp~GtGKTHLa~Aia~~a-~~~g~~v~f~~ 141 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLAAAIGLAL-IENGWRVLFTR 141 (269)
T ss_pred HHhcCceEEEEecCCCcHHHHHHHHHHHH-HHcCCceeeee
Confidence 46678899999999999996544333322 11222565554
No 287
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=88.94 E-value=0.21 Score=44.67 Aligned_cols=14 Identities=57% Similarity=0.672 Sum_probs=12.4
Q ss_pred EEEeccCCChhhch
Q 035699 348 LVIVGETGSGKTTQ 361 (633)
Q Consensus 348 vIi~a~TGSGKTt~ 361 (633)
|+|.|.+||||||.
T Consensus 1 I~i~G~~GsGKtTi 14 (129)
T PF13238_consen 1 IGISGIPGSGKTTI 14 (129)
T ss_dssp EEEEESTTSSHHHH
T ss_pred CEEECCCCCCHHHH
Confidence 57899999999975
No 288
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=88.93 E-value=0.3 Score=47.06 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=16.7
Q ss_pred CCeEEEeccCCChhhchHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~ 365 (633)
++.+++.||+||||||.+-..
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L 21 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKAL 21 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 457899999999999865443
No 289
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=88.92 E-value=0.47 Score=49.71 Aligned_cols=28 Identities=32% Similarity=0.534 Sum_probs=22.3
Q ss_pred HHHHcCCeEEEeccCCChhhchHHHHHH
Q 035699 340 QAVSEYPVLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 340 ~al~~~~~vIi~a~TGSGKTt~lp~~Ll 367 (633)
.++.+++.++++||||||||+.+-..+.
T Consensus 28 ~l~~~~~pvLl~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 28 LLLSNGRPVLLVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp HHHHCTEEEEEESSTTSSHHHHHHHHHH
T ss_pred HHHHcCCcEEEECCCCCchhHHHHhhhc
Confidence 4566788899999999999977666553
No 290
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=88.88 E-value=1.5 Score=51.33 Aligned_cols=75 Identities=13% Similarity=0.285 Sum_probs=55.5
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCC-----cccc-CC
Q 035699 518 IGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATN-----IAET-SL 591 (633)
Q Consensus 518 ~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATd-----IAer-GL 591 (633)
...+||.+||++-+..+++.+..... ..+++.++.+||+.+...+...+.. ...|||+|+ ...+ .+
T Consensus 74 ~~~~LIL~PTreLa~Qv~~~l~~~~~----~~~~i~v~~~~gG~~~~~q~~~l~~----~~~IVVgTPgrl~d~l~r~~l 145 (629)
T PRK11634 74 APQILVLAPTRELAVQVAEAMTDFSK----HMRGVNVVALYGGQRYDVQLRALRQ----GPQIVVGTPGRLLDHLKRGTL 145 (629)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHHh----hcCCceEEEEECCcCHHHHHHHhcC----CCCEEEECHHHHHHHHHcCCc
Confidence 45799999999999999888876532 2247889999999988877776643 357999995 3333 36
Q ss_pred CCCCccEEE
Q 035699 592 TIDGIKYVI 600 (633)
Q Consensus 592 dIp~V~~VI 600 (633)
++.++.+||
T Consensus 146 ~l~~l~~lV 154 (629)
T PRK11634 146 DLSKLSGLV 154 (629)
T ss_pred chhhceEEE
Confidence 677777555
No 291
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=88.85 E-value=0.36 Score=47.80 Aligned_cols=39 Identities=31% Similarity=0.449 Sum_probs=22.3
Q ss_pred CCeEEEeccCCChhhchHHHHHHHhccc--cCC-eeeecchh
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLYEAGYT--KQG-KIGCTQLR 383 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Lle~~~~--~~g-kilitqPr 383 (633)
+.+++|.|.||||||+.+-..+...... ... .+.|+-|.
T Consensus 38 ~~h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k 79 (205)
T PF01580_consen 38 NPHLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPK 79 (205)
T ss_dssp S-SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TT
T ss_pred CceEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCC
Confidence 3469999999999998766555443331 122 56666554
No 292
>PRK09183 transposase/IS protein; Provisional
Probab=88.85 E-value=0.5 Score=49.12 Aligned_cols=40 Identities=28% Similarity=0.294 Sum_probs=26.6
Q ss_pred HHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecc
Q 035699 341 AVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQ 381 (633)
Q Consensus 341 al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitq 381 (633)
.+..+.++++.||+|||||+....+..... ..+..+.++.
T Consensus 98 ~i~~~~~v~l~Gp~GtGKThLa~al~~~a~-~~G~~v~~~~ 137 (259)
T PRK09183 98 FIERNENIVLLGPSGVGKTHLAIALGYEAV-RAGIKVRFTT 137 (259)
T ss_pred chhcCCeEEEEeCCCCCHHHHHHHHHHHHH-HcCCeEEEEe
Confidence 466788999999999999986554443321 2223666554
No 293
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=88.71 E-value=0.36 Score=49.91 Aligned_cols=43 Identities=21% Similarity=0.361 Sum_probs=30.5
Q ss_pred HHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeec
Q 035699 338 LLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCT 380 (633)
Q Consensus 338 il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilit 380 (633)
++.-+..+.+++|.|+||+|||+.+.+++.......+.+++++
T Consensus 23 ~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~i 65 (271)
T cd01122 23 LTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTI 65 (271)
T ss_pred eeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEE
Confidence 3455677889999999999999988887765432223356554
No 294
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=88.61 E-value=0.42 Score=48.09 Aligned_cols=38 Identities=29% Similarity=0.285 Sum_probs=26.6
Q ss_pred eEEEeccCCChhhchHHHHHHHhccccCCeeeecchhH
Q 035699 347 VLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRR 384 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR 384 (633)
.+.|.|.||||||+.+-..+.+..-..+.+++|.-|.=
T Consensus 25 H~~I~G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~G 62 (229)
T PF01935_consen 25 HIAIFGTTGSGKSNTVKVLLEELLKKKGAKVIIFDPHG 62 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 47788999999998776665543213444788887753
No 295
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=88.49 E-value=0.4 Score=47.85 Aligned_cols=37 Identities=24% Similarity=0.274 Sum_probs=27.0
Q ss_pred HcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeec
Q 035699 343 SEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCT 380 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilit 380 (633)
..+.+++|.|++|||||+...+++.+.. ..+++++++
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~-~~g~~v~yi 53 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETA-GQGKKVAYI 53 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEE
Confidence 3468899999999999998888776653 234466554
No 296
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=88.34 E-value=0.23 Score=53.47 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=19.8
Q ss_pred HHcCCeEEEeccCCChhhchHHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
+.++..+++.||+||||||.+=..
T Consensus 26 i~~Gef~vllGPSGcGKSTlLr~I 49 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTLLRMI 49 (338)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 567888999999999999876443
No 297
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=88.24 E-value=0.59 Score=58.54 Aligned_cols=59 Identities=25% Similarity=0.308 Sum_probs=42.8
Q ss_pred HHHcCCeEEEeccCCChhhchHHHHHHHhcc--ccCCeeeecchhHHHHHHHHHHHHHHhC
Q 035699 341 AVSEYPVLVIVGETGSGKTTQIPQYLYEAGY--TKQGKIGCTQLRRVAAMSVAARVSQEMG 399 (633)
Q Consensus 341 al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~--~~~gkilitqPrR~aA~qva~rva~e~g 399 (633)
|+.-.+.++|.|+-|||||+.+..-++.... ....+|+|+.-|+.+|-.+..|+...++
T Consensus 6 A~dp~~~~~~~a~agsgkt~~l~~~~~~~~~~~~~~~~i~~~t~t~~aa~em~~Ri~~~L~ 66 (1141)
T TIGR02784 6 ASDPKTSAWVSANAGSGKTHVLTQRVIRLLLNGVPPSKILCLTYTKAAAAEMQNRVFDRLG 66 (1141)
T ss_pred hcCCCCCEEEEEECCCCHHHHHHHHHHHHHHcCCCCCeEEEEecCHHHHHHHHHHHHHHHH
Confidence 3444567889999999999886654433221 1234899999999999998888876653
No 298
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=88.24 E-value=2 Score=48.19 Aligned_cols=74 Identities=15% Similarity=0.299 Sum_probs=56.0
Q ss_pred CCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCC-----ccc-cCCC
Q 035699 519 GDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATN-----IAE-TSLT 592 (633)
Q Consensus 519 g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATd-----IAe-rGLd 592 (633)
..+||.+||++-+..+++.++.... ..+++.+..+||+.+...+...+. +...|||+|+ .+. ..++
T Consensus 73 ~~~lil~PtreLa~Q~~~~~~~~~~----~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~ 144 (460)
T PRK11776 73 VQALVLCPTRELADQVAKEIRRLAR----FIPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTLD 144 (460)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHh----hCCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCcc
Confidence 4699999999999999888876532 224688999999999988877765 3357999994 333 3567
Q ss_pred CCCccEEE
Q 035699 593 IDGIKYVI 600 (633)
Q Consensus 593 Ip~V~~VI 600 (633)
+.++.+||
T Consensus 145 l~~l~~lV 152 (460)
T PRK11776 145 LDALNTLV 152 (460)
T ss_pred HHHCCEEE
Confidence 77887776
No 299
>PRK00300 gmk guanylate kinase; Provisional
Probab=88.16 E-value=0.37 Score=47.54 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=17.9
Q ss_pred cCCeEEEeccCCChhhchHHHH
Q 035699 344 EYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
.+..++|+|++||||||.+-..
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l 25 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKAL 25 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 5678999999999999865444
No 300
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=88.16 E-value=0.21 Score=45.78 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=17.9
Q ss_pred HcCCeEEEeccCCChhhchHH
Q 035699 343 SEYPVLVIVGETGSGKTTQIP 363 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~lp 363 (633)
..+..+.|+|++||||||.+-
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~ 29 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLK 29 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHH
T ss_pred cCCCEEEEEccCCCcccccee
Confidence 457889999999999998764
No 301
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=88.02 E-value=0.24 Score=51.38 Aligned_cols=48 Identities=21% Similarity=0.217 Sum_probs=29.0
Q ss_pred HHcCCeEEEeccCCChhhchHHHHHHHhccccCCee------eecchhHHHHHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKI------GCTQLRRVAAMSV 390 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gki------litqPrR~aA~qv 390 (633)
+..+.++.|.||+||||||.+=-. ........|.| +-..|++++|..+
T Consensus 25 i~~G~i~~iiGpNG~GKSTLLk~l-~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 25 IPKGEITGILGPNGSGKSTLLKCL-AGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHH-hccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 456888999999999999865432 22111223333 3355666665544
No 302
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=87.92 E-value=2.8 Score=46.53 Aligned_cols=59 Identities=19% Similarity=0.268 Sum_probs=47.4
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCC
Q 035699 518 IGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATN 585 (633)
Q Consensus 518 ~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATd 585 (633)
++.+||.+||++-+..+++.+...... .++.+..++|+.+...+..++.. ...|||||+
T Consensus 73 ~~~~lil~Pt~eLa~Q~~~~~~~l~~~-----~~~~v~~~~gg~~~~~~~~~l~~----~~~IlV~Tp 131 (434)
T PRK11192 73 PPRILILTPTRELAMQVADQARELAKH-----THLDIATITGGVAYMNHAEVFSE----NQDIVVATP 131 (434)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHHcc-----CCcEEEEEECCCCHHHHHHHhcC----CCCEEEECh
Confidence 357999999999999999888775432 35789999999999888877753 357999997
No 303
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=87.76 E-value=1.3 Score=52.10 Aligned_cols=60 Identities=15% Similarity=0.185 Sum_probs=43.8
Q ss_pred HHHHHHcC-CeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCc
Q 035699 338 LLQAVSEY-PVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVK 401 (633)
Q Consensus 338 il~al~~~-~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~ 401 (633)
+...+.++ ...++.|.||||||..+...+... +..++|+.|...+|.+++.-+...++..
T Consensus 21 l~~~~~~~~~~~~l~Gvtgs~kt~~~a~~~~~~----~~p~Lvi~~n~~~A~ql~~el~~f~p~~ 81 (655)
T TIGR00631 21 LVEGLTDGEKHQTLLGVTGSGKTFTMANVIAQV----NRPTLVIAHNKTLAAQLYNEFKEFFPEN 81 (655)
T ss_pred HHHhhhcCCCcEEEECCCCcHHHHHHHHHHHHh----CCCEEEEECCHHHHHHHHHHHHHhCCCC
Confidence 34455444 244689999999998777655432 2379999999999999999887776543
No 304
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=87.70 E-value=0.61 Score=49.09 Aligned_cols=37 Identities=30% Similarity=0.512 Sum_probs=25.1
Q ss_pred CCeEEEeccCCChhhch---HHHHHHHhccccCCeeeecc
Q 035699 345 YPVLVIVGETGSGKTTQ---IPQYLYEAGYTKQGKIGCTQ 381 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~---lp~~Lle~~~~~~gkilitq 381 (633)
+-.+++.||+|||||+. +...++..++...+.++.+.
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~ 97 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT 97 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec
Confidence 33689999999999975 45666666665555444333
No 305
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=87.70 E-value=13 Score=45.77 Aligned_cols=115 Identities=17% Similarity=0.002 Sum_probs=68.2
Q ss_pred eEEEeccCCChhhchHHH---HHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccceEe--eeeecccc-c-CCC
Q 035699 347 VLVIVGETGSGKTTQIPQ---YLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVG--YSIRFEDC-T-SDK 419 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~---~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~VG--y~ir~e~~-~-s~~ 419 (633)
.=+|+=-||||||..... .+.+. .....|+++.=|+.|--|+...+.....+..- ++ -++..-.. . ...
T Consensus 275 ~G~IWHtqGSGKTlTm~~~A~~l~~~--~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~--~~~~~s~~~Lk~~l~~~~ 350 (962)
T COG0610 275 GGYIWHTQGSGKTLTMFKLARLLLEL--PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFN--DPKAESTSELKELLEDGK 350 (962)
T ss_pred ceEEEeecCCchHHHHHHHHHHHHhc--cCCCeEEEEechHHHHHHHHHHHHHHHHhhhh--cccccCHHHHHHHHhcCC
Confidence 357777889999975433 33333 33448999999999999988766543221110 00 00000000 0 124
Q ss_pred CcEEEeCchHHHHHHhcC-C---CCCCceeeeeecccC-------------CCccEEEeeccc
Q 035699 420 TVLKYMTDGMLLREIVLE-P---SLESYSVLIDLINYR-------------PDLKLLISSATL 465 (633)
Q Consensus 420 t~Iiv~TpGrLL~~l~~~-~---~L~~~s~vIdi~~~r-------------pdlklil~SAT~ 465 (633)
..|+|+|=.-+-...... + .-.++-+|+|.+|.. ++...+.|+.|+
T Consensus 351 ~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G~~~~~~~~~~~~a~~~gFTGTP 413 (962)
T COG0610 351 GKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYGELAKLLKKALKKAIFIGFTGTP 413 (962)
T ss_pred CcEEEEEecccchhhhcccccccCCCcEEEEEechhhccccHHHHHHHHHhccceEEEeeCCc
Confidence 579999987777666543 1 233344444888743 456788999998
No 306
>PHA02244 ATPase-like protein
Probab=87.62 E-value=0.59 Score=51.03 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=23.8
Q ss_pred HHHHHHHcCCeEEEeccCCChhhchHHHHH
Q 035699 337 ELLQAVSEYPVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 337 ~il~al~~~~~vIi~a~TGSGKTt~lp~~L 366 (633)
.+..++..+..|++.||||||||+.+-...
T Consensus 111 ri~r~l~~~~PVLL~GppGtGKTtLA~aLA 140 (383)
T PHA02244 111 DIAKIVNANIPVFLKGGAGSGKNHIAEQIA 140 (383)
T ss_pred HHHHHHhcCCCEEEECCCCCCHHHHHHHHH
Confidence 456778888889999999999997654443
No 307
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=87.56 E-value=0.48 Score=45.29 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=13.3
Q ss_pred cCCeEEEeccCCChhhchHHHH
Q 035699 344 EYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
+.++++|.|++|||||+.+-.+
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~ 44 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRAL 44 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4578999999999999775543
No 308
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=87.56 E-value=2.7 Score=49.32 Aligned_cols=78 Identities=13% Similarity=0.144 Sum_probs=64.2
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccc-cCCCCCCc
Q 035699 518 IGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAE-TSLTIDGI 596 (633)
Q Consensus 518 ~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAe-rGLdIp~V 596 (633)
..+++|-+||..-+...++.+...+.. .++.+..+||+++...+..++.....|...|||+|.-.= .++.+.++
T Consensus 284 g~qvlilaPT~~LA~Q~~~~~~~l~~~-----~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l 358 (630)
T TIGR00643 284 GYQVALMAPTEILAEQHYNSLRNLLAP-----LGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRL 358 (630)
T ss_pred CCcEEEECCHHHHHHHHHHHHHHHhcc-----cCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcccccccc
Confidence 468999999999999999999886532 268899999999999999999989899999999998443 24556677
Q ss_pred cEEE
Q 035699 597 KYVI 600 (633)
Q Consensus 597 ~~VI 600 (633)
.+||
T Consensus 359 ~lvV 362 (630)
T TIGR00643 359 ALVI 362 (630)
T ss_pred ceEE
Confidence 7776
No 309
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=87.54 E-value=0.33 Score=47.44 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=17.1
Q ss_pred CCeEEEeccCCChhhchHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~ 365 (633)
+..++|+||+||||||.+-..
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l 22 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAAL 22 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 457899999999999876544
No 310
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=87.52 E-value=0.48 Score=46.95 Aligned_cols=26 Identities=31% Similarity=0.273 Sum_probs=21.2
Q ss_pred cCCeEEEeccCCChhhchHHHHHHHh
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYLYEA 369 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~Lle~ 369 (633)
.++++.|.|++|||||+...+++...
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~ 36 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNA 36 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999998877776554
No 311
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=87.46 E-value=0.46 Score=48.43 Aligned_cols=38 Identities=13% Similarity=0.269 Sum_probs=26.8
Q ss_pred HHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeec
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCT 380 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilit 380 (633)
+..+..+++.|++||||||...+++... ..++.+++++
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g~~~~yi 58 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGF-LQNGYSVSYV 58 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHH-HhCCCcEEEE
Confidence 4557889999999999999877777653 2233344443
No 312
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=87.44 E-value=0.48 Score=42.52 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=16.0
Q ss_pred EEEeccCCChhhchHHHHHHH
Q 035699 348 LVIVGETGSGKTTQIPQYLYE 368 (633)
Q Consensus 348 vIi~a~TGSGKTt~lp~~Lle 368 (633)
|++.||+|||||+.+-.....
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 578999999999765544443
No 313
>PRK14530 adenylate kinase; Provisional
Probab=87.36 E-value=0.48 Score=47.48 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=19.0
Q ss_pred CCeEEEeccCCChhhchHHHHHHHh
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLYEA 369 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Lle~ 369 (633)
+..++|.|++||||||+.-......
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999999866554433
No 314
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=87.31 E-value=0.59 Score=45.23 Aligned_cols=71 Identities=21% Similarity=0.215 Sum_probs=41.9
Q ss_pred eEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccceEeeeeecccccCCCCcEEEeC
Q 035699 347 VLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMT 426 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~VGy~ir~e~~~s~~t~Iiv~T 426 (633)
.+.|.|++||||||..-...-..|+. .+. |=-++..+|.++|..+-.. ..--..++.|=..+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~----~vs-------aG~iFR~~A~e~gmsl~ef-------~~~AE~~p~iD~~i 63 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK----LVS-------AGTIFREMARERGMSLEEF-------SRYAEEDPEIDKEI 63 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc----eee-------ccHHHHHHHHHcCCCHHHH-------HHHHhcCchhhHHH
Confidence 47789999999998765554444442 222 2245677788887765321 11112345566666
Q ss_pred chHHHHHHh
Q 035699 427 DGMLLREIV 435 (633)
Q Consensus 427 pGrLL~~l~ 435 (633)
+.+......
T Consensus 64 D~rq~e~a~ 72 (179)
T COG1102 64 DRRQKELAK 72 (179)
T ss_pred HHHHHHHHH
Confidence 776666543
No 315
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=87.19 E-value=0.52 Score=54.79 Aligned_cols=55 Identities=13% Similarity=0.135 Sum_probs=38.2
Q ss_pred cCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcc
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKL 402 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~v 402 (633)
+.+.+++.||||||||+.+..|-+-. + ++.++|+-|.-++....+... +.+|..+
T Consensus 157 g~~hvLviapTgSGKg~g~VIPnLL~-~--~~S~VV~DpKGEl~~~Ta~~R-~~~G~~V 211 (606)
T PRK13897 157 GFQHALLFAPTGSGKGVGFVIPNLLF-W--EDSVVVHDIKLENYELTSGWR-EKQGQKV 211 (606)
T ss_pred CCceEEEEcCCCCCcceEEehhhHHh-C--CCCEEEEeCcHHHHHHHHHHH-HHCCCeE
Confidence 34568999999999998654443222 1 457999999999987776544 4456443
No 316
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=87.18 E-value=0.43 Score=53.96 Aligned_cols=29 Identities=31% Similarity=0.549 Sum_probs=23.7
Q ss_pred HcCCeEEEeccCCChhhchHHHHHHHhcc
Q 035699 343 SEYPVLVIVGETGSGKTTQIPQYLYEAGY 371 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~lp~~Lle~~~ 371 (633)
..+++++|+||+||||||++-....+.|+
T Consensus 108 l~~~iLLltGPsGcGKSTtvkvLskelg~ 136 (634)
T KOG1970|consen 108 LGSRILLLTGPSGCGKSTTVKVLSKELGY 136 (634)
T ss_pred CCceEEEEeCCCCCCchhHHHHHHHhhCc
Confidence 36789999999999999998776666554
No 317
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=87.02 E-value=0.37 Score=46.51 Aligned_cols=19 Identities=32% Similarity=0.623 Sum_probs=15.9
Q ss_pred CeEEEeccCCChhhchHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~ 364 (633)
..++|+|++||||||.+-.
T Consensus 2 ~~~~i~G~sGsGKttl~~~ 20 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDY 20 (179)
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4689999999999987653
No 318
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=86.99 E-value=6.9 Score=38.13 Aligned_cols=75 Identities=17% Similarity=0.283 Sum_probs=53.7
Q ss_pred CCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCc-----c-ccC
Q 035699 517 PIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNI-----A-ETS 590 (633)
Q Consensus 517 ~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdI-----A-erG 590 (633)
..+.+||.+|+..-+......+...... .++.+..+||+.+.......+. +...|+|+|+- . ..-
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~ 138 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKH-----TNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGK 138 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhcc-----CCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCC
Confidence 3467999999999999988888775321 3678889999998877666554 44579999952 2 222
Q ss_pred CCCCCccEEE
Q 035699 591 LTIDGIKYVI 600 (633)
Q Consensus 591 LdIp~V~~VI 600 (633)
+.++++.+||
T Consensus 139 ~~~~~l~~lI 148 (203)
T cd00268 139 LDLSKVKYLV 148 (203)
T ss_pred CChhhCCEEE
Confidence 5566676665
No 319
>PHA03311 helicase-primase subunit BBLF4; Provisional
Probab=86.95 E-value=0.82 Score=53.52 Aligned_cols=42 Identities=38% Similarity=0.478 Sum_probs=33.9
Q ss_pred CCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAA 392 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~ 392 (633)
-.+++|.|.-||||||.+- .+.+.. .++||.||++||+++..
T Consensus 71 Fs~~~itG~AGsGKst~i~-~l~~~l-----~cvitg~T~vAAqN~~~ 112 (828)
T PHA03311 71 FSVYLITGTAGAGKSTSIQ-TLNENL-----DCVITGATRVAAQNLSA 112 (828)
T ss_pred eEEEEEecCCCCChHHHHH-HHHHhc-----CEEEEcchHHHHHhhhc
Confidence 3578999999999998764 444432 68899999999999876
No 320
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=86.95 E-value=0.6 Score=54.91 Aligned_cols=53 Identities=15% Similarity=0.103 Sum_probs=37.0
Q ss_pred cCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCC
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGV 400 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~ 400 (633)
+.++++++|+||||||..+..|-+-. .++.++|+-|.-++....+... +.+|.
T Consensus 138 ~~~hvlviApTgSGKgvg~VIPnLL~---~~gS~VV~DpKGE~~~~Ta~~R-~~~G~ 190 (670)
T PRK13850 138 EQPHSLVVAPTRAGKGVGVVIPTLLT---FKGSVIALDVKGELFELTSRAR-KASGD 190 (670)
T ss_pred CCceEEEEecCCCCceeeehHhHHhc---CCCCEEEEeCCchHHHHHHHHH-HhCCC
Confidence 34679999999999998765553321 2458999999988876665533 33554
No 321
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=86.86 E-value=1.1 Score=46.24 Aligned_cols=37 Identities=22% Similarity=0.278 Sum_probs=22.4
Q ss_pred CeEEEeccCCChhhchHHH---HHHHhccccCCeeeecch
Q 035699 346 PVLVIVGETGSGKTTQIPQ---YLYEAGYTKQGKIGCTQL 382 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~---~Lle~~~~~~gkilitqP 382 (633)
..+++.||+|||||+..-. .+...+....+.++.+.+
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~ 82 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER 82 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH
Confidence 4689999999999986433 333333333344444433
No 322
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=86.84 E-value=0.74 Score=49.46 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=26.6
Q ss_pred HHHHHHHcCCeEEEeccCCChhhchHHHHHHHhc
Q 035699 337 ELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAG 370 (633)
Q Consensus 337 ~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~ 370 (633)
.++.++..+..|++.|++|||||+.+-+.....+
T Consensus 56 ~vl~~l~~~~~ilL~G~pGtGKTtla~~lA~~l~ 89 (327)
T TIGR01650 56 AICAGFAYDRRVMVQGYHGTGKSTHIEQIAARLN 89 (327)
T ss_pred HHHHHHhcCCcEEEEeCCCChHHHHHHHHHHHHC
Confidence 3667777788899999999999987766655443
No 323
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=86.80 E-value=0.54 Score=54.33 Aligned_cols=39 Identities=26% Similarity=0.249 Sum_probs=25.7
Q ss_pred cCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchh
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLR 383 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPr 383 (633)
+.+++++.|+||||||+.++..|... ...+.+++|.-|.
T Consensus 175 e~~h~li~G~tGsGKs~~i~~ll~~~-~~~g~~~ii~D~~ 213 (566)
T TIGR02759 175 ETQHILIHGTTGSGKSVAIRKLLRWI-RQRGDRAIIYDKG 213 (566)
T ss_pred cccceEEEcCCCCCHHHHHHHHHHHH-HhcCCeEEEEECC
Confidence 45679999999999998877655432 2222255555544
No 324
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=86.73 E-value=0.72 Score=47.69 Aligned_cols=66 Identities=23% Similarity=0.266 Sum_probs=37.1
Q ss_pred HHHHHHHHc----CCeEEEeccCCChhhchHHHHHHHhcccc--CCeeeecchhHHHHHHHHHHHHHHhCCc
Q 035699 336 EELLQAVSE----YPVLVIVGETGSGKTTQIPQYLYEAGYTK--QGKIGCTQLRRVAAMSVAARVSQEMGVK 401 (633)
Q Consensus 336 ~~il~al~~----~~~vIi~a~TGSGKTt~lp~~Lle~~~~~--~gkilitqPrR~aA~qva~rva~e~g~~ 401 (633)
+++.+.|.+ ..+|.|+|..|+|||+....++....... ++.+.+.........++...+...++..
T Consensus 6 ~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~ 77 (287)
T PF00931_consen 6 EKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEP 77 (287)
T ss_dssp HHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC
T ss_pred HHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccc
Confidence 344555555 67899999999999988877765522111 2222222222211245555566666554
No 325
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=86.65 E-value=1 Score=43.69 Aligned_cols=38 Identities=29% Similarity=0.401 Sum_probs=26.1
Q ss_pred HHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCC
Q 035699 337 ELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQG 375 (633)
Q Consensus 337 ~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~g 375 (633)
.+-.+......|+|.|++||||+ .+...+|......++
T Consensus 14 ~~~~~a~~~~pVlI~GE~GtGK~-~lA~~IH~~s~r~~~ 51 (168)
T PF00158_consen 14 QAKRAASSDLPVLITGETGTGKE-LLARAIHNNSPRKNG 51 (168)
T ss_dssp HHHHHTTSTS-EEEECSTTSSHH-HHHHHHHHCSTTTTS
T ss_pred HHHHHhCCCCCEEEEcCCCCcHH-HHHHHHHHhhhcccC
Confidence 33444455567999999999998 667788886554444
No 326
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=86.61 E-value=0.38 Score=43.31 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=19.3
Q ss_pred HcCCeEEEeccCCChhhchHHHHH
Q 035699 343 SEYPVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~lp~~L 366 (633)
..++.+.+.|++||||||.+...+
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHHhh
Confidence 456789999999999999776543
No 327
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=86.59 E-value=0.52 Score=43.44 Aligned_cols=19 Identities=37% Similarity=0.623 Sum_probs=14.9
Q ss_pred eEEEeccCCChhhchHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~ 365 (633)
.|+++|++|+|||+.+-.+
T Consensus 1 ~vlL~G~~G~GKt~l~~~l 19 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLAREL 19 (139)
T ss_dssp EEEEEESSSSSHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHH
Confidence 3789999999999665443
No 328
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=86.56 E-value=0.63 Score=47.15 Aligned_cols=37 Identities=24% Similarity=0.388 Sum_probs=27.1
Q ss_pred HcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeec
Q 035699 343 SEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCT 380 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilit 380 (633)
-.+..++|.|++|||||+...+++++.. ..+.+++++
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~-~~g~~~~y~ 59 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGAL-KQGKKVYVI 59 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHH-hCCCEEEEE
Confidence 3468899999999999998888877642 334455554
No 329
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=86.53 E-value=0.72 Score=47.59 Aligned_cols=49 Identities=22% Similarity=0.323 Sum_probs=33.2
Q ss_pred HHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAA 392 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~ 392 (633)
+-.+.+++|.|++|||||+...++++...- .+.+++++.. ++...++..
T Consensus 20 ~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~-~ge~vlyvs~-~e~~~~l~~ 68 (260)
T COG0467 20 LPRGSVVLITGPPGTGKTIFALQFLYEGAR-EGEPVLYVST-EESPEELLE 68 (260)
T ss_pred CcCCcEEEEEcCCCCcHHHHHHHHHHHHHh-cCCcEEEEEe-cCCHHHHHH
Confidence 455789999999999999999999887532 2335555433 333444444
No 330
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=86.51 E-value=0.82 Score=49.47 Aligned_cols=51 Identities=27% Similarity=0.236 Sum_probs=31.1
Q ss_pred HHHHHHH-HHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHH
Q 035699 334 FREELLQ-AVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVA 386 (633)
Q Consensus 334 ~q~~il~-al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~a 386 (633)
...+++. ++..+.+++|+|+|||||||.+-..+.. .....+++++.-+.++
T Consensus 166 ~~~~~L~~~v~~~~~ili~G~tGsGKTTll~al~~~--i~~~~riv~iEd~~El 217 (340)
T TIGR03819 166 GVARLLRAIVAARLAFLISGGTGSGKTTLLSALLAL--VAPDERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHcc--CCCCCcEEEECCccee
Confidence 3344444 4556789999999999999877544322 2222355555544444
No 331
>PRK08233 hypothetical protein; Provisional
Probab=86.51 E-value=0.48 Score=45.44 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=16.7
Q ss_pred CeEEEeccCCChhhchHHHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~L 366 (633)
.+|.|.|++||||||+.-...
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~ 24 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLT 24 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 467889999999998765443
No 332
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=86.50 E-value=0.46 Score=46.51 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=19.6
Q ss_pred HHcCCeEEEeccCCChhhchHHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
+..+..+.|.||+||||||.+-..
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~i 41 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEG 41 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 456788999999999999987543
No 333
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=86.45 E-value=0.64 Score=45.17 Aligned_cols=27 Identities=33% Similarity=0.321 Sum_probs=22.0
Q ss_pred HcCCeEEEeccCCChhhchHHHHHHHh
Q 035699 343 SEYPVLVIVGETGSGKTTQIPQYLYEA 369 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~lp~~Lle~ 369 (633)
..+..+++.|++|+|||+.+.+++...
T Consensus 30 ~~g~l~~i~g~~g~GKT~~~~~l~~~~ 56 (193)
T PF13481_consen 30 PRGELTLIAGPPGSGKTTLALQLAAAL 56 (193)
T ss_dssp -TTSEEEEEECSTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 367889999999999999887776644
No 334
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=86.44 E-value=0.57 Score=51.52 Aligned_cols=44 Identities=23% Similarity=0.252 Sum_probs=28.3
Q ss_pred cCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHH
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAM 388 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~ 388 (633)
..+.++|.|.||||||+++... +......+.+++|.-|.-+...
T Consensus 14 e~~~~li~G~~GsGKT~~i~~l-l~~~~~~g~~~iI~D~kg~~~~ 57 (386)
T PF10412_consen 14 ENRHILIIGATGSGKTQAIRHL-LDQIRARGDRAIIYDPKGEFTE 57 (386)
T ss_dssp GGG-EEEEE-TTSSHHHHHHHH-HHHHHHTT-EEEEEEETTHHHH
T ss_pred hhCcEEEECCCCCCHHHHHHHH-HHHHHHcCCEEEEEECCchHHH
Confidence 4567899999999999866544 4433444447888888765543
No 335
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=86.36 E-value=0.62 Score=44.96 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=18.5
Q ss_pred CCeEEEeccCCChhhchHHHHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLYE 368 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Lle 368 (633)
-..+++.|++||||||+.-.....
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999986555433
No 336
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=86.34 E-value=0.35 Score=51.37 Aligned_cols=17 Identities=41% Similarity=0.690 Sum_probs=14.1
Q ss_pred cCCeEEEeccCCChhhc
Q 035699 344 EYPVLVIVGETGSGKTT 360 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt 360 (633)
+..++++.||||||||.
T Consensus 96 ~KSNILLiGPTGsGKTl 112 (408)
T COG1219 96 SKSNILLIGPTGSGKTL 112 (408)
T ss_pred eeccEEEECCCCCcHHH
Confidence 34578999999999994
No 337
>PRK14873 primosome assembly protein PriA; Provisional
Probab=86.32 E-value=1 Score=52.93 Aligned_cols=63 Identities=17% Similarity=0.150 Sum_probs=55.4
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCcc
Q 035699 518 IGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIA 587 (633)
Q Consensus 518 ~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIA 587 (633)
.+++||.+|....+..+...|+..+ +...+..+||+++..+|...+.....|..+|||-|=-|
T Consensus 188 Gk~vLvLvPEi~lt~q~~~rl~~~f-------~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 188 GRGALVVVPDQRDVDRLEAALRALL-------GAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred CCeEEEEecchhhHHHHHHHHHHHc-------CCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee
Confidence 4689999999999999999999874 22468889999999999999999999999999998543
No 338
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=86.32 E-value=0.49 Score=44.17 Aligned_cols=18 Identities=33% Similarity=0.687 Sum_probs=14.2
Q ss_pred EEEeccCCChhhchHHHH
Q 035699 348 LVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 348 vIi~a~TGSGKTt~lp~~ 365 (633)
++|+|||||||||.+-..
T Consensus 2 i~i~GpsGsGKstl~~~L 19 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRL 19 (137)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 678999999999754433
No 339
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=86.30 E-value=0.73 Score=47.47 Aligned_cols=35 Identities=37% Similarity=0.415 Sum_probs=22.3
Q ss_pred eEEEeccCCChhhchHHHHHHHhccccCCeeeecch
Q 035699 347 VLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQL 382 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqP 382 (633)
.++|.|++|||||+.+.-.|...... -..|++..|
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~-f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHK-FDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhccc-CCEEEEEec
Confidence 57889999999998766555432111 124555555
No 340
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=86.29 E-value=0.53 Score=45.44 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=17.3
Q ss_pred eEEEeccCCChhhchHHHHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQYLYE 368 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~Lle 368 (633)
++++.|++||||||+.-.....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999986655443
No 341
>PRK14701 reverse gyrase; Provisional
Probab=86.27 E-value=1.7 Score=56.11 Aligned_cols=66 Identities=11% Similarity=0.097 Sum_probs=55.2
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCc
Q 035699 518 IGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNI 586 (633)
Q Consensus 518 ~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdI 586 (633)
...+||.+||++-+..++..|+.....++ .++.+..+||+++..++..+++.+..|...|||+|+-
T Consensus 122 g~~aLVl~PTreLa~Qi~~~l~~l~~~~~---~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 122 GKKCYIILPTTLLVKQTVEKIESFCEKAN---LDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred CCeEEEEECHHHHHHHHHHHHHHHHhhcC---CceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 35899999999999999999988643322 2577899999999999988888888888899999974
No 342
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=86.24 E-value=0.48 Score=55.50 Aligned_cols=54 Identities=15% Similarity=-0.061 Sum_probs=35.9
Q ss_pred CCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCc
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVK 401 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~ 401 (633)
...+++.|+||||||+.+..|-+- ..++.++|+-|.-++..-.+....+.+|..
T Consensus 175 ~~HvlviapTgSGKgvg~ViPnLL---~~~~S~VV~D~KGE~~~~Tag~R~~~~G~~ 228 (636)
T PRK13880 175 PEHVLTYAPTRSGKGVGLVVPTLL---SWGHSSVITDLKGELWALTAGWRQKHAKNK 228 (636)
T ss_pred CceEEEEecCCCCCceEEEccchh---hCCCCEEEEeCcHHHHHHHHHHHHHhCCCe
Confidence 367999999999999854443221 224589999999998755554333334433
No 343
>PRK10689 transcription-repair coupling factor; Provisional
Probab=86.11 E-value=1.2 Score=55.63 Aligned_cols=78 Identities=12% Similarity=0.157 Sum_probs=62.4
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCC-ccccCCCCCCc
Q 035699 518 IGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATN-IAETSLTIDGI 596 (633)
Q Consensus 518 ~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATd-IAerGLdIp~V 596 (633)
.+++||.+||..-+...+..+...+.. -++.+..++|..+..++..++.....|...|||+|. ++...+.+.++
T Consensus 649 g~qvlvLvPT~eLA~Q~~~~f~~~~~~-----~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L 723 (1147)
T PRK10689 649 HKQVAVLVPTTLLAQQHYDNFRDRFAN-----WPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDL 723 (1147)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhcc-----CCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhC
Confidence 468999999999999999999876422 246788899999999999998888888889999996 44445666777
Q ss_pred cEEE
Q 035699 597 KYVI 600 (633)
Q Consensus 597 ~~VI 600 (633)
.+||
T Consensus 724 ~lLV 727 (1147)
T PRK10689 724 GLLI 727 (1147)
T ss_pred CEEE
Confidence 7554
No 344
>CHL00181 cbbX CbbX; Provisional
Probab=86.07 E-value=0.91 Score=47.94 Aligned_cols=38 Identities=32% Similarity=0.489 Sum_probs=24.5
Q ss_pred CCeEEEeccCCChhhchH---HHHHHHhccccCCeeeecch
Q 035699 345 YPVLVIVGETGSGKTTQI---PQYLYEAGYTKQGKIGCTQL 382 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~l---p~~Lle~~~~~~gkilitqP 382 (633)
+.++++.||+|||||+.. ...++..++...+.++.+..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~ 99 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR 99 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH
Confidence 345889999999999863 33445555555555444443
No 345
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=85.81 E-value=0.73 Score=54.02 Aligned_cols=53 Identities=15% Similarity=0.056 Sum_probs=36.9
Q ss_pred CCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCc
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVK 401 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~ 401 (633)
...+++.|+||||||+.+..|-+ +..++.++|+-|.-+++..++... +.+|.+
T Consensus 224 ~~H~Lv~ApTgsGKt~g~VIPnL---L~~~gS~VV~DpKgEl~~~Ta~~R-~~~G~~ 276 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSVVVPTA---LKWGGPLVVLDPSTEVAPMVSEHR-RDAGRE 276 (641)
T ss_pred CceEEEEeCCCCCccceEehhhh---hcCCCCEEEEeCcHHHHHHHHHHH-HHCCCe
Confidence 45789999999999986444432 123458999999998876665533 445543
No 346
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=85.81 E-value=0.52 Score=43.72 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=26.5
Q ss_pred HHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhcc
Q 035699 334 FREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGY 371 (633)
Q Consensus 334 ~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~ 371 (633)
.+.++-.+...+..|+|+|++||||++ +..+|+...-
T Consensus 10 l~~~l~~~a~~~~pvli~GE~GtGK~~-~A~~lh~~~~ 46 (138)
T PF14532_consen 10 LRRQLERLAKSSSPVLITGEPGTGKSL-LARALHRYSG 46 (138)
T ss_dssp HHHHHHHHHCSSS-EEEECCTTSSHHH-HHHCCHHTTT
T ss_pred HHHHHHHHhCCCCcEEEEcCCCCCHHH-HHHHHHhhcC
Confidence 445566666677889999999999986 5667776543
No 347
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=85.75 E-value=1 Score=47.71 Aligned_cols=32 Identities=34% Similarity=0.439 Sum_probs=22.3
Q ss_pred HHHHHHHHcCC--eEEEeccCCChhhchHHHHHH
Q 035699 336 EELLQAVSEYP--VLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 336 ~~il~al~~~~--~vIi~a~TGSGKTt~lp~~Ll 367 (633)
..+..++.++. .+++.||+|||||+.+-.+..
T Consensus 25 ~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~ 58 (337)
T PRK12402 25 ERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAR 58 (337)
T ss_pred HHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34444555555 789999999999987655443
No 348
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=85.71 E-value=0.6 Score=46.04 Aligned_cols=24 Identities=38% Similarity=0.653 Sum_probs=17.4
Q ss_pred CCeEEEeccCCChhhchHHHHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLYE 368 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Lle 368 (633)
...|+++||.|||||+.|.+....
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~ 26 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNG 26 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHS
T ss_pred CceEEEEcCCCCCHHHHHHHHhcC
Confidence 457899999999999888766653
No 349
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=85.59 E-value=0.77 Score=51.66 Aligned_cols=22 Identities=23% Similarity=0.567 Sum_probs=19.4
Q ss_pred HHcCCeEEEeccCCChhhchHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIP 363 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp 363 (633)
+..++.+.|+||.||||||.+-
T Consensus 29 i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 29 LPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred ecCCCEEEEECCCCCCHHHHHh
Confidence 4568999999999999999877
No 350
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=85.47 E-value=0.43 Score=46.61 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=18.6
Q ss_pred HHcCCeEEEeccCCChhhchHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIP 363 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp 363 (633)
+..++++.|.|++||||||.+-
T Consensus 15 i~~Ge~~~i~G~nGsGKSTLl~ 36 (190)
T TIGR01166 15 AERGEVLALLGANGAGKSTLLL 36 (190)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4577889999999999998654
No 351
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=85.43 E-value=0.46 Score=47.42 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=20.2
Q ss_pred HHHcCCeEEEeccCCChhhchHHH
Q 035699 341 AVSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 341 al~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
-|.+++.|++.||.||||||.+-+
T Consensus 27 ~ia~ge~vv~lGpSGcGKTTLLnl 50 (259)
T COG4525 27 TIASGELVVVLGPSGCGKTTLLNL 50 (259)
T ss_pred eecCCCEEEEEcCCCccHHHHHHH
Confidence 477889999999999999986543
No 352
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=85.26 E-value=0.96 Score=51.71 Aligned_cols=26 Identities=35% Similarity=0.571 Sum_probs=20.4
Q ss_pred CCeEEEeccCCChhhchHHHHHHHhc
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLYEAG 370 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Lle~~ 370 (633)
+++++++||+||||||++-....+.+
T Consensus 45 ~~iLlLtGP~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTVKVLAKELG 70 (519)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999998765555544
No 353
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=85.04 E-value=0.87 Score=44.28 Aligned_cols=45 Identities=18% Similarity=0.264 Sum_probs=30.4
Q ss_pred EEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHH
Q 035699 348 LVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQ 396 (633)
Q Consensus 348 vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~ 396 (633)
++|.|++|||||+...+++.. .+.+++++..-+..-..+..|+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~----~~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE----LGGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh----cCCCeEEEEccCcCCHHHHHHHHH
Confidence 678999999999887777655 223666665544444555566544
No 354
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=84.96 E-value=0.65 Score=49.40 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=16.3
Q ss_pred cCCeEEEeccCCChhhchHHH
Q 035699 344 EYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~ 364 (633)
.+.+++|+||||||||.....
T Consensus 3 ~~~ii~I~GpTasGKS~LAl~ 23 (300)
T PRK14729 3 ENKIVFIFGPTAVGKSNILFH 23 (300)
T ss_pred CCcEEEEECCCccCHHHHHHH
Confidence 356899999999999964433
No 355
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.95 E-value=1.2 Score=48.43 Aligned_cols=123 Identities=21% Similarity=0.253 Sum_probs=73.4
Q ss_pred cCCeEEEeccCCChhhchHHHHHHHhccccCC---eeeecchhHHHHHHHHHHHHHHhCCcccceEeeee------eccc
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYLYEAGYTKQG---KIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSI------RFED 414 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~g---kilitqPrR~aA~qva~rva~e~g~~vg~~VGy~i------r~e~ 414 (633)
.-.+|+++|--||||||.+..+.+.. .+.| .++|.-.-|..|.......|...++++..+.-..- .+-+
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~--kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~ 177 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYY--KKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVD 177 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHH--HhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHH
Confidence 34578889999999999988776642 3333 56788889999998888788877777522110000 0001
Q ss_pred -ccCCCCc-EEEeCchHHHHHHhcCCCCCCceeeeeecc-cCCCccEEEeeccc--CHHhHhhhh
Q 035699 415 -CTSDKTV-LKYMTDGMLLREIVLEPSLESYSVLIDLIN-YRPDLKLLISSATL--DAENFSDYF 474 (633)
Q Consensus 415 -~~s~~t~-Iiv~TpGrLL~~l~~~~~L~~~s~vIdi~~-~rpdlklil~SAT~--~~~~~s~~f 474 (633)
-..++.+ |+|-|.||.-+.-. -+.-++++.. ..|+.-+++|-|++ .++..+.-|
T Consensus 178 ~fKke~fdvIIvDTSGRh~qe~s------LfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aF 236 (483)
T KOG0780|consen 178 RFKKENFDVIIVDTSGRHKQEAS------LFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAF 236 (483)
T ss_pred HHHhcCCcEEEEeCCCchhhhHH------HHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHH
Confidence 1124444 66889999765421 0111112222 24777777787777 344444444
No 356
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=84.90 E-value=0.77 Score=46.18 Aligned_cols=38 Identities=18% Similarity=0.324 Sum_probs=26.4
Q ss_pred HHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeec
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCT 380 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilit 380 (633)
+..+..++|.|++|||||+...+++... ..++.+++++
T Consensus 17 i~~G~~~~i~G~~G~GKT~l~~~~~~~~-~~~g~~~~~i 54 (229)
T TIGR03881 17 IPRGFFVAVTGEPGTGKTIFCLHFAYKG-LRDGDPVIYV 54 (229)
T ss_pred CcCCeEEEEECCCCCChHHHHHHHHHHH-HhcCCeEEEE
Confidence 4457889999999999998877776544 2333344443
No 357
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=84.88 E-value=2.1 Score=53.74 Aligned_cols=67 Identities=15% Similarity=0.199 Sum_probs=52.4
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCc
Q 035699 518 IGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNI 586 (633)
Q Consensus 518 ~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdI 586 (633)
.+++||.+||++-+..+++.+...+..++ .....+..+||+++..++...++.+.+|...|||+|+-
T Consensus 121 g~~vLIL~PTreLa~Qi~~~l~~l~~~~~--i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~ 187 (1171)
T TIGR01054 121 GKRCYIILPTTLLVIQVAEKISSLAEKAG--VGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTM 187 (1171)
T ss_pred CCeEEEEeCHHHHHHHHHHHHHHHHHhcC--CceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 46899999999999999999988653321 11223557899999999888887777788899999973
No 358
>PLN02165 adenylate isopentenyltransferase
Probab=84.88 E-value=0.67 Score=49.90 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=18.3
Q ss_pred HcCCeEEEeccCCChhhchHHHH
Q 035699 343 SEYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
..+.+++|.||||||||+.....
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~L 63 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDL 63 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHH
Confidence 34578999999999999876543
No 359
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=84.80 E-value=0.8 Score=46.11 Aligned_cols=27 Identities=33% Similarity=0.362 Sum_probs=22.4
Q ss_pred HHcCCeEEEeccCCChhhchHHHHHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQYLYE 368 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~Lle 368 (633)
+..+.++.|.|++|||||+.+.+++..
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 445788999999999999888877655
No 360
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=84.80 E-value=0.48 Score=47.07 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=18.5
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++.+.|.|++||||||.+-.
T Consensus 24 i~~G~~~~i~G~nGsGKSTLl~~ 46 (214)
T cd03292 24 ISAGEFVFLVGPSGAGKSTLLKL 46 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 34678899999999999976543
No 361
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=84.76 E-value=0.79 Score=46.03 Aligned_cols=36 Identities=31% Similarity=0.274 Sum_probs=25.3
Q ss_pred HcCCeEEEeccCCChhhchHHHHHHHhccccCCeeee
Q 035699 343 SEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGC 379 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkili 379 (633)
..+.++.|.|++|||||+...+++.+.. ..+.++++
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~-~~~~~v~y 56 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAA-KNGKKVIY 56 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEE
Confidence 3467899999999999988777766542 22334444
No 362
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=84.76 E-value=0.47 Score=47.32 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=18.8
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++.+.|.|++||||||.+-.
T Consensus 27 i~~G~~~~l~G~nGsGKSTLl~~ 49 (218)
T cd03255 27 IEKGEFVAIVGPSGSGKSTLLNI 49 (218)
T ss_pred EcCCCEEEEEcCCCCCHHHHHHH
Confidence 45688899999999999976543
No 363
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=84.76 E-value=0.82 Score=44.48 Aligned_cols=21 Identities=52% Similarity=0.681 Sum_probs=18.0
Q ss_pred eEEEeccCCChhhchHHHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~Ll 367 (633)
+++|.|.-||||||.+-..+.
T Consensus 2 v~ii~GfLGsGKTTli~~ll~ 22 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLK 22 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 688999999999988777764
No 364
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=84.72 E-value=1 Score=48.33 Aligned_cols=54 Identities=22% Similarity=0.239 Sum_probs=40.0
Q ss_pred cCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccC--Ceeeecch
Q 035699 328 TLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQ--GKIGCTQL 382 (633)
Q Consensus 328 ~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~--gkilitqP 382 (633)
-.|..+-|..-+.++.+|..++..||-|+|||....-...+. +..+ .+|+.+-|
T Consensus 126 I~~kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~a-l~~~~v~rIiLtRP 181 (348)
T COG1702 126 IIPKTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDA-LGAGQVRRIILTRP 181 (348)
T ss_pred eEecChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhh-hhhcccceeeecCc
Confidence 468888999999999999999999999999995433222222 1111 27888888
No 365
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.72 E-value=0.49 Score=47.79 Aligned_cols=22 Identities=36% Similarity=0.620 Sum_probs=18.6
Q ss_pred HHcCCeEEEeccCCChhhchHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIP 363 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp 363 (633)
+..++.+.|.|++||||||.+-
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~ 49 (233)
T cd03258 28 VPKGEIFGIIGRSGAGKSTLIR 49 (233)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578899999999999997654
No 366
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=84.61 E-value=0.49 Score=46.79 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=19.1
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++.+.|.|++||||||.+-.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~ 45 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKI 45 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45788899999999999986543
No 367
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=84.59 E-value=0.51 Score=46.95 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=19.2
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++.+.|.|++||||||.+-.
T Consensus 25 i~~G~~~~l~G~nGsGKSTLl~~ 47 (214)
T TIGR02673 25 IRKGEFLFLTGPSGAGKTTLLKL 47 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 56788899999999999987643
No 368
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=84.58 E-value=0.92 Score=45.59 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=18.3
Q ss_pred HHHHHHHHcCCeEEEeccCCChhhch
Q 035699 336 EELLQAVSEYPVLVIVGETGSGKTTQ 361 (633)
Q Consensus 336 ~~il~al~~~~~vIi~a~TGSGKTt~ 361 (633)
..+.-+..++.++++.|++|||||+.
T Consensus 13 rAL~iAAaG~h~lLl~GppGtGKTml 38 (206)
T PF01078_consen 13 RALEIAAAGGHHLLLIGPPGTGKTML 38 (206)
T ss_dssp HHHHHHHHCC--EEEES-CCCTHHHH
T ss_pred HHHHHHHcCCCCeEEECCCCCCHHHH
Confidence 34555667888899999999999975
No 369
>PRK14531 adenylate kinase; Provisional
Probab=84.54 E-value=0.83 Score=44.55 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=17.8
Q ss_pred eEEEeccCCChhhchHHHHHHHh
Q 035699 347 VLVIVGETGSGKTTQIPQYLYEA 369 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~Lle~ 369 (633)
.+++.|++||||||+.-......
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58889999999999865554443
No 370
>PRK04328 hypothetical protein; Provisional
Probab=84.52 E-value=0.87 Score=46.91 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=26.8
Q ss_pred cCCeEEEeccCCChhhchHHHHHHHhccccCCeeeec
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCT 380 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilit 380 (633)
.+..++|.|++|||||+...+++.+. ...+.+++++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~-~~~ge~~lyi 57 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG-LQMGEPGVYV 57 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-HhcCCcEEEE
Confidence 46889999999999999888888774 3333354443
No 371
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=84.48 E-value=0.86 Score=45.78 Aligned_cols=48 Identities=31% Similarity=0.404 Sum_probs=30.5
Q ss_pred cCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHH
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAAR 393 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~r 393 (633)
.+..++|.|++|+|||+...+++... ...+.+++++..- ....++.++
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~-~~~g~~~~y~s~e-~~~~~l~~~ 62 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQG-LKNGEKAMYISLE-EREERILGY 62 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HhCCCeEEEEECC-CCHHHHHHH
Confidence 46788999999999998877777654 3334455554332 233444443
No 372
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=84.46 E-value=0.5 Score=48.94 Aligned_cols=24 Identities=42% Similarity=0.660 Sum_probs=19.8
Q ss_pred HHcCCeEEEeccCCChhhchHHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
|..+..+++.||.||||||.+-..
T Consensus 24 I~~gef~vliGpSGsGKTTtLkMI 47 (309)
T COG1125 24 IEEGEFLVLIGPSGSGKTTTLKMI 47 (309)
T ss_pred ecCCeEEEEECCCCCcHHHHHHHH
Confidence 567788999999999999986543
No 373
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=84.38 E-value=1.4 Score=49.40 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=25.9
Q ss_pred HHHHHHHHHHcCCeEEEeccCCChhhchHHHH
Q 035699 334 FREELLQAVSEYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 334 ~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
..+.++.++..+.++++.|++|+|||+.+-..
T Consensus 183 ~le~l~~~L~~~~~iil~GppGtGKT~lA~~l 214 (459)
T PRK11331 183 TIETILKRLTIKKNIILQGPPGVGKTFVARRL 214 (459)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCHHHHHHHH
Confidence 34667888888999999999999999766443
No 374
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=84.38 E-value=1.2 Score=52.08 Aligned_cols=54 Identities=15% Similarity=0.155 Sum_probs=34.1
Q ss_pred CCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHH--HHHHHHHHHHHHhCC
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRV--AAMSVAARVSQEMGV 400 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~--aA~qva~rva~e~g~ 400 (633)
...++|.|+||||||+.+-..+... ...+..++|+-|-.. +..++.. .+..+|.
T Consensus 176 ~~H~lv~G~TGsGKT~l~~~l~~q~-i~~g~~viv~DpKgD~~l~~~~~~-~~~~~G~ 231 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAELLITQD-IRRGDVVIVIDPKGDADLKRRMRA-EAKRAGR 231 (634)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH-HHcCCeEEEEeCCCchHHHHHHHH-HHHHhCC
Confidence 3458889999999998875444433 223447889999865 3333332 4444453
No 375
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=84.37 E-value=1.1 Score=48.01 Aligned_cols=40 Identities=25% Similarity=0.277 Sum_probs=28.4
Q ss_pred HHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecc
Q 035699 341 AVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQ 381 (633)
Q Consensus 341 al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitq 381 (633)
-+-.+.++.|.||+|||||+...+++.... ..++.++++.
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~-~~g~~v~yId 90 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQ-KAGGTAAFID 90 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEEc
Confidence 344568899999999999998777776642 3344555543
No 376
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=84.36 E-value=0.51 Score=47.28 Aligned_cols=23 Identities=30% Similarity=0.283 Sum_probs=19.1
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++.+.+.|++||||||.+-.
T Consensus 10 i~~Ge~~~l~G~NGsGKSTLlk~ 32 (213)
T PRK15177 10 MGYHEHIGILAAPGSGKTTLTRL 32 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45678899999999999987644
No 377
>PRK07261 topology modulation protein; Provisional
Probab=84.32 E-value=0.76 Score=44.50 Aligned_cols=18 Identities=39% Similarity=0.671 Sum_probs=15.0
Q ss_pred EEEeccCCChhhchHHHH
Q 035699 348 LVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 348 vIi~a~TGSGKTt~lp~~ 365 (633)
++|+|++||||||..-..
T Consensus 3 i~i~G~~GsGKSTla~~l 20 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKL 20 (171)
T ss_pred EEEEcCCCCCHHHHHHHH
Confidence 788999999999876543
No 378
>PRK06921 hypothetical protein; Provisional
Probab=84.32 E-value=1.4 Score=46.01 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=24.3
Q ss_pred cCCeEEEeccCCChhhchHHHHHHHhcccc-CCeeeecch
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYLYEAGYTK-QGKIGCTQL 382 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~-~gkilitqP 382 (633)
.+..+++.|+||+|||..+-.++.+. ..+ +..++++..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l-~~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANEL-MRKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH-hhhcCceEEEEEH
Confidence 46779999999999997654444332 222 235666554
No 379
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.30 E-value=0.52 Score=46.90 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=18.9
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++.+.|.|++||||||.+-.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~ 45 (213)
T cd03259 23 VEPGEFLALLGPSGCGKTTLLRL 45 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHH
Confidence 45788899999999999986543
No 380
>PRK14527 adenylate kinase; Provisional
Probab=84.30 E-value=0.88 Score=44.61 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=19.3
Q ss_pred cCCeEEEeccCCChhhchHHHHHHH
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYLYE 368 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~Lle 368 (633)
....+++.|++||||||+.-.....
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~ 29 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQE 29 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999986654433
No 381
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=84.29 E-value=0.8 Score=42.13 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=16.1
Q ss_pred eEEEeccCCChhhchHHHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~Ll 367 (633)
+++|+|++||||||..-....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478899999999987554443
No 382
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=84.18 E-value=0.51 Score=46.57 Aligned_cols=23 Identities=35% Similarity=0.601 Sum_probs=18.5
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++.+.|.|++||||||.+-.
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~ 43 (206)
T TIGR03608 21 IEKGKMYAIIGESGSGKSTLLNI 43 (206)
T ss_pred EeCCcEEEEECCCCCCHHHHHHH
Confidence 44678899999999999976543
No 383
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.17 E-value=0.53 Score=46.69 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=19.3
Q ss_pred HHcCCeEEEeccCCChhhchHHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
+..++.+.|.|++||||||.+-..
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l 46 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTTIRMI 46 (210)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHH
Confidence 457788999999999999765433
No 384
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=84.11 E-value=0.51 Score=46.80 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=18.3
Q ss_pred HHcCCeEEEeccCCChhhchHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIP 363 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp 363 (633)
+..++++.|.|++||||||.+-
T Consensus 24 i~~G~~~~l~G~nGsGKSTLl~ 45 (211)
T cd03225 24 IKKGEFVLIVGPNGSGKSTLLR 45 (211)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 4567889999999999998654
No 385
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=84.10 E-value=0.85 Score=51.70 Aligned_cols=56 Identities=16% Similarity=0.253 Sum_probs=36.5
Q ss_pred HHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCC
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGV 400 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~ 400 (633)
+-.+.+++|.|++|+||||...+++.... .++.+++++. ..+...++..+. ..+|.
T Consensus 260 ~~~gs~~li~G~~G~GKt~l~~~f~~~~~-~~ge~~~y~s-~eEs~~~i~~~~-~~lg~ 315 (484)
T TIGR02655 260 FFKDSIILATGATGTGKTLLVSKFLENAC-ANKERAILFA-YEESRAQLLRNA-YSWGI 315 (484)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEE-eeCCHHHHHHHH-HHcCC
Confidence 44568899999999999999999987653 3333655543 334445555543 44443
No 386
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=84.10 E-value=0.52 Score=48.36 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=19.0
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..+..++|.|+|||||||.+-.
T Consensus 27 i~~Ge~~~i~G~nGsGKSTL~~~ 49 (235)
T COG1122 27 IEKGERVLLIGPNGSGKSTLLKL 49 (235)
T ss_pred ECCCCEEEEECCCCCCHHHHHHH
Confidence 45677899999999999987643
No 387
>PRK11823 DNA repair protein RadA; Provisional
Probab=84.09 E-value=1.2 Score=49.96 Aligned_cols=56 Identities=23% Similarity=0.321 Sum_probs=35.4
Q ss_pred HHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCC
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGV 400 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~ 400 (633)
+..+..++|.|++|+||||.+.+++.... ..+++++++.- .+...++..+ +..+|.
T Consensus 77 i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a-~~g~~vlYvs~-Ees~~qi~~r-a~rlg~ 132 (446)
T PRK11823 77 LVPGSVVLIGGDPGIGKSTLLLQVAARLA-AAGGKVLYVSG-EESASQIKLR-AERLGL 132 (446)
T ss_pred ccCCEEEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEEc-cccHHHHHHH-HHHcCC
Confidence 44467899999999999999888877543 23346666543 2333445443 334443
No 388
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=84.07 E-value=0.54 Score=46.75 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=19.0
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++.+.|.|++||||||.+-.
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~ 44 (213)
T cd03235 22 VKPGEFLAIVGPNGAGKSTLLKA 44 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45788899999999999986543
No 389
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=84.04 E-value=0.54 Score=47.72 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=18.7
Q ss_pred HHcCCeEEEeccCCChhhchHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIP 363 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp 363 (633)
+..++.+.|.|++||||||.+-
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~ 46 (243)
T TIGR02315 25 INPGEFVAIIGPSGAGKSTLLR 46 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578899999999999998654
No 390
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=84.03 E-value=0.89 Score=51.56 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=22.7
Q ss_pred cCCeEEEeccCCChhhchHHHHHHHh
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYLYEA 369 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~Lle~ 369 (633)
.+..++|.|++|||||+...+++.+.
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g 45 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNG 45 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998764
No 391
>PRK06835 DNA replication protein DnaC; Validated
Probab=84.01 E-value=1.3 Score=47.86 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=23.2
Q ss_pred cCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecch
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQL 382 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqP 382 (633)
.+..+++.|+||+|||..+.-...+. ...+..|+++.-
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l-~~~g~~V~y~t~ 219 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKEL-LDRGKSVIYRTA 219 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHH-HHCCCeEEEEEH
Confidence 45789999999999997543332222 222235665543
No 392
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=83.97 E-value=0.67 Score=46.09 Aligned_cols=18 Identities=44% Similarity=0.470 Sum_probs=15.3
Q ss_pred CCeEEEeccCCChhhchH
Q 035699 345 YPVLVIVGETGSGKTTQI 362 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~l 362 (633)
+.++.|+|++||||||.+
T Consensus 6 g~vi~I~G~sGsGKSTl~ 23 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVA 23 (207)
T ss_pred eEEEEEECCCCCCHHHHH
Confidence 457889999999999864
No 393
>PLN02840 tRNA dimethylallyltransferase
Probab=83.84 E-value=0.46 Score=52.70 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=17.6
Q ss_pred CCeEEEeccCCChhhchHHHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Ll 367 (633)
+.+++|.||||||||+.......
T Consensus 21 ~~vi~I~GptgsGKTtla~~La~ 43 (421)
T PLN02840 21 EKVIVISGPTGAGKSRLALELAK 43 (421)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999987554433
No 394
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=83.81 E-value=0.56 Score=46.10 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=18.6
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++.+.|.|++||||||.+-.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~ 45 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRM 45 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHHH
Confidence 34678899999999999986543
No 395
>PRK05541 adenylylsulfate kinase; Provisional
Probab=83.79 E-value=0.84 Score=43.99 Aligned_cols=23 Identities=39% Similarity=0.382 Sum_probs=18.3
Q ss_pred HcCCeEEEeccCCChhhchHHHH
Q 035699 343 SEYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
..+.+++++|+.||||||..-..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l 27 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKAL 27 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHH
Confidence 45678999999999999876433
No 396
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=83.79 E-value=1.2 Score=44.50 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=19.5
Q ss_pred HcCCeEEEeccCCChhhchHHHHHHH
Q 035699 343 SEYPVLVIVGETGSGKTTQIPQYLYE 368 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~lp~~Lle 368 (633)
..+..+++.|++|||||+.+-.+...
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~ 61 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAA 61 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999776554443
No 397
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=83.69 E-value=0.54 Score=46.95 Aligned_cols=22 Identities=36% Similarity=0.653 Sum_probs=18.6
Q ss_pred HHcCCeEEEeccCCChhhchHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIP 363 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp 363 (633)
+..++.+.|+|++||||||.+-
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~ 44 (222)
T cd03224 23 VPEGEIVALLGRNGAGKTTLLK 44 (222)
T ss_pred EcCCeEEEEECCCCCCHHHHHH
Confidence 4578889999999999998654
No 398
>PRK01184 hypothetical protein; Provisional
Probab=83.67 E-value=0.86 Score=44.21 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=16.0
Q ss_pred eEEEeccCCChhhchHHHHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQYLYE 368 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~Lle 368 (633)
+++++|++||||||+. ..+.+
T Consensus 3 ~i~l~G~~GsGKsT~a-~~~~~ 23 (184)
T PRK01184 3 IIGVVGMPGSGKGEFS-KIARE 23 (184)
T ss_pred EEEEECCCCCCHHHHH-HHHHH
Confidence 5888999999999953 44333
No 399
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=83.62 E-value=1.1 Score=44.45 Aligned_cols=27 Identities=37% Similarity=0.534 Sum_probs=19.3
Q ss_pred HcCCeEEEeccCCChhhchHHHHHHHh
Q 035699 343 SEYPVLVIVGETGSGKTTQIPQYLYEA 369 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~lp~~Lle~ 369 (633)
.....+++.|++|||||+.+...+...
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~ 39 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEF 39 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhc
Confidence 334567888999999999888776653
No 400
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=83.45 E-value=0.59 Score=48.11 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=19.9
Q ss_pred HHHcCCeEEEeccCCChhhchHHH
Q 035699 341 AVSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 341 al~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
.+..+..|-|.||+||||||.+=.
T Consensus 25 ~v~~GEfvsilGpSGcGKSTLLri 48 (248)
T COG1116 25 SVEKGEFVAILGPSGCGKSTLLRL 48 (248)
T ss_pred EECCCCEEEEECCCCCCHHHHHHH
Confidence 356788999999999999987643
No 401
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.40 E-value=0.54 Score=47.06 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=18.8
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++.+.|.|++||||||.+-.
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~ 49 (220)
T cd03293 27 VEEGEFVALVGPSGCGKSTLLRI 49 (220)
T ss_pred EeCCcEEEEECCCCCCHHHHHHH
Confidence 45678899999999999986643
No 402
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.32 E-value=0.6 Score=45.25 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=18.6
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++.+.|.|++||||||.+-.
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~ 45 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRC 45 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45678899999999999986543
No 403
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=83.25 E-value=0.6 Score=46.53 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=18.8
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++.+.|.|++||||||.+-.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~ 48 (216)
T TIGR00960 26 ITKGEMVFLVGHSGAGKSTFLKL 48 (216)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45778899999999999986543
No 404
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=83.23 E-value=0.74 Score=44.47 Aligned_cols=21 Identities=14% Similarity=0.358 Sum_probs=17.0
Q ss_pred CCeEEEeccCCChhhchHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~ 365 (633)
+++++++|++||||||..-..
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l 22 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARAL 22 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 568999999999999865433
No 405
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.15 E-value=0.6 Score=47.23 Aligned_cols=24 Identities=38% Similarity=0.578 Sum_probs=19.2
Q ss_pred HHcCCeEEEeccCCChhhchHHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
+..+..+.|.|++||||||.+-..
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l 46 (235)
T cd03261 23 VRRGEILAIIGPSGSGKSTLLRLI 46 (235)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 457788999999999999865433
No 406
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=83.14 E-value=1.9 Score=45.22 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=17.3
Q ss_pred CeEEEeccCCChhhchHHHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~L 366 (633)
+++++.|+|||||||.+-..+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~ 132 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLA 132 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHh
Confidence 578999999999998765544
No 407
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=83.10 E-value=0.6 Score=45.73 Aligned_cols=24 Identities=46% Similarity=0.596 Sum_probs=20.0
Q ss_pred HHHcCCeEEEeccCCChhhchHHH
Q 035699 341 AVSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 341 al~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
.+..+..+.|.|++||||||.+-.
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~ 44 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKI 44 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHH
Confidence 456788999999999999987653
No 408
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=83.09 E-value=0.63 Score=47.01 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=19.0
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++.+.|.|++||||||.+-.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~ 45 (236)
T cd03219 23 VRPGEIHGLIGPNGAGKTTLFNL 45 (236)
T ss_pred ecCCcEEEEECCCCCCHHHHHHH
Confidence 45788899999999999986543
No 409
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=83.01 E-value=0.62 Score=46.29 Aligned_cols=22 Identities=32% Similarity=0.656 Sum_probs=18.4
Q ss_pred HHcCCeEEEeccCCChhhchHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIP 363 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp 363 (633)
+..+..+.|.|++||||||.+-
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~ 44 (213)
T cd03301 23 IADGEFVVLLGPSGCGKTTTLR 44 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 4568889999999999998653
No 410
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=82.99 E-value=0.63 Score=45.04 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=18.6
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++.+.|.|++||||||.+-.
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~ 47 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQL 47 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 44678899999999999976543
No 411
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=82.97 E-value=0.94 Score=44.45 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=17.3
Q ss_pred eEEEeccCCChhhchHHHHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQYLYE 368 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~Lle 368 (633)
.|+|.|++||||||+.-.....
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999986655444
No 412
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.97 E-value=0.63 Score=47.09 Aligned_cols=24 Identities=21% Similarity=0.472 Sum_probs=19.3
Q ss_pred HHcCCeEEEeccCCChhhchHHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
+..++.+.|.|++||||||.+-..
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l 47 (241)
T cd03256 24 INPGEFVALIGPSGAGKSTLLRCL 47 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 456888999999999999865433
No 413
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=82.96 E-value=0.64 Score=46.85 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=18.8
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++.+.|.|++||||||.+-.
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~ 52 (225)
T PRK10247 30 LRAGEFKLITGPSGCGKSTLLKI 52 (225)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 44678899999999999986543
No 414
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=82.96 E-value=2.2 Score=44.19 Aligned_cols=51 Identities=16% Similarity=0.008 Sum_probs=30.2
Q ss_pred HHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHH
Q 035699 339 LQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVA 391 (633)
Q Consensus 339 l~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva 391 (633)
...+..+.++++.|++|+|||..+.....+.. ..+..|+++ +.-++...+.
T Consensus 99 ~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~sv~f~-~~~el~~~Lk 149 (254)
T COG1484 99 VEFFERGENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLFI-TAPDLLSKLK 149 (254)
T ss_pred HHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEE-EHHHHHHHHH
Confidence 34455888999999999999976554444432 222244443 2223444443
No 415
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.91 E-value=0.64 Score=46.53 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=18.9
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..+..+.|.|++||||||.+-.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~ 45 (220)
T cd03265 23 VRRGEIFGLLGPNGAGKTTTIKM 45 (220)
T ss_pred ECCCCEEEEECCCCCCHHHHHHH
Confidence 44678899999999999987643
No 416
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=82.88 E-value=0.63 Score=46.11 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=18.6
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++.+.|.|++||||||.+-.
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~ 45 (208)
T cd03268 23 VKKGEIYGFLGPNGAGKTTTMKI 45 (208)
T ss_pred EcCCcEEEEECCCCCCHHHHHHH
Confidence 34678899999999999976543
No 417
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=82.88 E-value=0.65 Score=43.59 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=18.1
Q ss_pred HHcCCeEEEeccCCChhhchHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIP 363 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp 363 (633)
+..++.+.|.|++||||||.+-
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~ 44 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLK 44 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 4567889999999999997653
No 418
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=82.87 E-value=1.1 Score=47.51 Aligned_cols=27 Identities=30% Similarity=0.350 Sum_probs=22.6
Q ss_pred HcCCeEEEeccCCChhhchHHHHHHHh
Q 035699 343 SEYPVLVIVGETGSGKTTQIPQYLYEA 369 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~lp~~Lle~ 369 (633)
..+.++.|.|++|||||+...+++...
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~ 119 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNV 119 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 346888999999999999888887664
No 419
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=82.86 E-value=1.9 Score=50.57 Aligned_cols=66 Identities=27% Similarity=0.423 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHcCCeEEEeccCCChhhchHHH---HHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCC
Q 035699 333 PFREELLQAVSEYPVLVIVGETGSGKTTQIPQ---YLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGV 400 (633)
Q Consensus 333 ~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~---~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~ 400 (633)
+.|.+.+... .+. ++|.|..|||||..+.. ++...+......|+++.=|+-||.++-.|+...+|.
T Consensus 5 ~~Q~~av~~~-~gp-~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~~ 73 (655)
T COG0210 5 PEQREAVLHP-DGP-LLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLGL 73 (655)
T ss_pred HHHHHHHhcC-CCC-eEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhCc
Confidence 3444444444 344 66778889999987654 344443333337888777778888999999888873
No 420
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=82.83 E-value=10 Score=42.49 Aligned_cols=72 Identities=13% Similarity=0.250 Sum_probs=53.2
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCC------ccccCCCC
Q 035699 520 DILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATN------IAETSLTI 593 (633)
Q Consensus 520 ~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATd------IAerGLdI 593 (633)
.+||.+||++-+..+++.+...... .++.++.++|+.+...+...+. +...|||||+ +....+++
T Consensus 77 ~aLil~PtreLa~Qi~~~~~~~~~~-----~~~~~~~~~gg~~~~~~~~~l~----~~~~IiV~TP~rL~~~~~~~~~~l 147 (456)
T PRK10590 77 RALILTPTRELAAQIGENVRDYSKY-----LNIRSLVVFGGVSINPQMMKLR----GGVDVLVATPGRLLDLEHQNAVKL 147 (456)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhcc-----CCCEEEEEECCcCHHHHHHHHc----CCCcEEEEChHHHHHHHHcCCccc
Confidence 6899999999999999988875422 3577888999998877665543 3468999996 23445666
Q ss_pred CCccEEE
Q 035699 594 DGIKYVI 600 (633)
Q Consensus 594 p~V~~VI 600 (633)
.+|.+||
T Consensus 148 ~~v~~lV 154 (456)
T PRK10590 148 DQVEILV 154 (456)
T ss_pred ccceEEE
Confidence 7776554
No 421
>PRK10646 ADP-binding protein; Provisional
Probab=82.82 E-value=1.4 Score=42.20 Aligned_cols=46 Identities=22% Similarity=0.265 Sum_probs=30.0
Q ss_pred HHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHH
Q 035699 337 ELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVA 386 (633)
Q Consensus 337 ~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~a 386 (633)
.+-..+..+.+|++.|+-|+||||..--.+...+. .-.|+.||-.+
T Consensus 20 ~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~----~~~V~SPTFtl 65 (153)
T PRK10646 20 RVAKACDGATVIYLYGDLGAGKTTFSRGFLQALGH----QGNVKSPTYTL 65 (153)
T ss_pred HHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHcCC----CCCCCCCCEee
Confidence 34566777889999999999999654433333332 22367777544
No 422
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=82.79 E-value=0.64 Score=47.12 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=18.9
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++.+.|.|++||||||.+-.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~ 46 (236)
T TIGR03864 24 VRPGEFVALLGPNGAGKSTLFSL 46 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45688899999999999986543
No 423
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=82.77 E-value=0.65 Score=44.78 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=18.6
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++.+.|.|++||||||.+-.
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~ 47 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARL 47 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHH
Confidence 45678899999999999976543
No 424
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=82.71 E-value=1.1 Score=36.63 Aligned_cols=19 Identities=37% Similarity=0.676 Sum_probs=14.6
Q ss_pred eEEEeccCCChhhchHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~ 365 (633)
++.++|+.||||||..-..
T Consensus 1 ~i~i~G~~gsGKst~~~~l 19 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKL 19 (69)
T ss_pred CEEEECCCCCCHHHHHHHH
Confidence 3678999999999865433
No 425
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=82.71 E-value=0.67 Score=46.45 Aligned_cols=22 Identities=41% Similarity=0.573 Sum_probs=18.4
Q ss_pred HHcCCeEEEeccCCChhhchHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIP 363 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp 363 (633)
+..++.+.|.|+.||||||.+-
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~ 49 (228)
T cd03257 28 IKKGETLGLVGESGSGKSTLAR 49 (228)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578899999999999997654
No 426
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=82.68 E-value=0.65 Score=46.69 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=18.9
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++++.|.|++||||||.+-.
T Consensus 33 i~~Ge~~~i~G~nGsGKSTLl~~ 55 (228)
T PRK10584 33 VKRGETIALIGESGSGKSTLLAI 55 (228)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45688999999999999986543
No 427
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=82.68 E-value=0.64 Score=46.43 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=18.8
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++.+.|.|++||||||.+-.
T Consensus 28 i~~G~~~~i~G~nGsGKSTLl~~ 50 (221)
T TIGR02211 28 IGKGEIVAIVGSSGSGKSTLLHL 50 (221)
T ss_pred EcCCcEEEEECCCCCCHHHHHHH
Confidence 45688899999999999986544
No 428
>PRK08084 DNA replication initiation factor; Provisional
Probab=82.67 E-value=1.3 Score=45.08 Aligned_cols=37 Identities=14% Similarity=0.239 Sum_probs=23.9
Q ss_pred CCeEEEeccCCChhhchHHHHHHHhccccCCeeeecch
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQL 382 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqP 382 (633)
+..++++||+|||||+.+-.+..... ..+.+++++.-
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~-~~~~~v~y~~~ 81 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELS-QRGRAVGYVPL 81 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-hCCCeEEEEEH
Confidence 35799999999999977655554332 12235555544
No 429
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=82.64 E-value=0.64 Score=47.58 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=19.5
Q ss_pred HHcCCeEEEeccCCChhhchHHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
+..++.+.|.|++||||||.+-..
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l 52 (253)
T PRK14242 29 FEQNQVTALIGPSGCGKSTFLRCL 52 (253)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHH
Confidence 557888999999999999865443
No 430
>PRK08118 topology modulation protein; Reviewed
Probab=82.62 E-value=1 Score=43.56 Aligned_cols=18 Identities=39% Similarity=0.700 Sum_probs=14.4
Q ss_pred eEEEeccCCChhhchHHH
Q 035699 347 VLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~ 364 (633)
-++|+|++||||||..-.
T Consensus 3 rI~I~G~~GsGKSTlak~ 20 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQ 20 (167)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478899999999985433
No 431
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=82.61 E-value=1.3 Score=51.66 Aligned_cols=51 Identities=18% Similarity=0.174 Sum_probs=36.1
Q ss_pred CCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhC
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMG 399 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g 399 (633)
.+.+++.|+||||||+.+..|-+ +..++.++|+-|.-+++...+. .-+.+|
T Consensus 211 ~~H~lv~ApTgsGKgvg~VIPnL---L~~~gS~VV~DpKgE~~~~Ta~-~R~~~G 261 (623)
T TIGR02767 211 STHMIFFAGSGGFKTTSVVVPTA---LKYGGPLVCLDPSTEVAPMVCE-HRRQAG 261 (623)
T ss_pred CceEEEEeCCCCCccceeehhhh---hcCCCCEEEEEChHHHHHHHHH-HHHHcC
Confidence 36799999999999986554432 2234589999999998776654 334444
No 432
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.59 E-value=0.69 Score=44.62 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=18.2
Q ss_pred HHcCCeEEEeccCCChhhchHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIP 363 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp 363 (633)
+..++.+.|.|++||||||.+-
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~ 44 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIK 44 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 4567889999999999997654
No 433
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=82.59 E-value=4.3 Score=39.40 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=17.6
Q ss_pred CCeEEEeccCCChhhchHHHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Ll 367 (633)
++.+|++||+|||||+..-..+.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~ 24 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ 24 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56789999999999966544443
No 434
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=82.58 E-value=1.6 Score=44.90 Aligned_cols=42 Identities=21% Similarity=0.131 Sum_probs=29.1
Q ss_pred HHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeec
Q 035699 339 LQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCT 380 (633)
Q Consensus 339 l~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilit 380 (633)
+.-+..+..++|.|.||+|||+.+.+.+.......+..|++.
T Consensus 13 lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~ 54 (259)
T PF03796_consen 13 LGGLRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYF 54 (259)
T ss_dssp HSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEE
T ss_pred hcCCCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEE
Confidence 334556788999999999999988888776644333466664
No 435
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=82.57 E-value=0.79 Score=45.86 Aligned_cols=20 Identities=35% Similarity=0.630 Sum_probs=16.7
Q ss_pred cCCeEEEeccCCChhhchHH
Q 035699 344 EYPVLVIVGETGSGKTTQIP 363 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp 363 (633)
++..+++.|++||||||.+-
T Consensus 27 ~~~~~~i~G~NGsGKSTll~ 46 (213)
T cd03279 27 NNGLFLICGPTGAGKSTILD 46 (213)
T ss_pred ccCEEEEECCCCCCHHHHHH
Confidence 36689999999999998753
No 436
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=82.52 E-value=12 Score=41.44 Aligned_cols=73 Identities=14% Similarity=0.221 Sum_probs=53.5
Q ss_pred CCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCC------ccccCCC
Q 035699 519 GDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATN------IAETSLT 592 (633)
Q Consensus 519 g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATd------IAerGLd 592 (633)
..+||.+||++-+..+++.+...... .++.+..+||+.+...+...+.. ...|||+|+ +-...++
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~-----~~~~v~~~~gg~~~~~~~~~l~~----~~~IlV~TP~~l~~~l~~~~~~ 154 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQA-----TGLKLGLAYGGDGYDKQLKVLES----GVDILIGTTGRLIDYAKQNHIN 154 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhcc-----CCceEEEEECCCCHHHHHHHhcC----CCCEEEECHHHHHHHHHcCCcc
Confidence 46999999999999998887765432 36788899999887777666543 247999997 2234566
Q ss_pred CCCccEEE
Q 035699 593 IDGIKYVI 600 (633)
Q Consensus 593 Ip~V~~VI 600 (633)
+.+|.+||
T Consensus 155 l~~v~~lV 162 (423)
T PRK04837 155 LGAIQVVV 162 (423)
T ss_pred cccccEEE
Confidence 77777665
No 437
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=82.51 E-value=0.67 Score=46.09 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=18.9
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++.+.|.|++||||||.+-.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~ 47 (207)
T PRK13539 25 LAAGEALVLTGPNGSGKTTLLRL 47 (207)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45788899999999999987543
No 438
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=82.50 E-value=0.68 Score=45.93 Aligned_cols=22 Identities=45% Similarity=0.703 Sum_probs=18.1
Q ss_pred HHcCCeEEEeccCCChhhchHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIP 363 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp 363 (633)
+..++.+.|.|++||||||.+-
T Consensus 23 i~~G~~~~l~G~nGsGKSTLl~ 44 (213)
T cd03262 23 VKKGEVVVIIGPSGSGKSTLLR 44 (213)
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 4467889999999999997543
No 439
>PRK10908 cell division protein FtsE; Provisional
Probab=82.50 E-value=0.68 Score=46.40 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=19.6
Q ss_pred HHcCCeEEEeccCCChhhchHHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
+..++.+.|.|++||||||.+-..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l 48 (222)
T PRK10908 25 MRPGEMAFLTGHSGAGKSTLLKLI 48 (222)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 457888999999999999876543
No 440
>PRK09354 recA recombinase A; Provisional
Probab=82.45 E-value=1.9 Score=46.78 Aligned_cols=38 Identities=26% Similarity=0.270 Sum_probs=27.2
Q ss_pred HHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeec
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCT 380 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilit 380 (633)
+-.+.++.|.||+|||||+...+++.... ..++.++++
T Consensus 57 ip~G~IteI~G~~GsGKTtLal~~~~~~~-~~G~~~~yI 94 (349)
T PRK09354 57 LPRGRIVEIYGPESSGKTTLALHAIAEAQ-KAGGTAAFI 94 (349)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEE
Confidence 33467899999999999998888776652 334455544
No 441
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=82.44 E-value=0.68 Score=46.91 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=18.9
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..+..+.|.|++||||||.+-.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~ 45 (243)
T TIGR01978 23 VKKGEIHAIMGPNGSGKSTLSKT 45 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45778899999999999986543
No 442
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=82.40 E-value=0.7 Score=45.43 Aligned_cols=16 Identities=50% Similarity=0.736 Sum_probs=13.6
Q ss_pred eEEEeccCCChhhchH
Q 035699 347 VLVIVGETGSGKTTQI 362 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~l 362 (633)
++.|.|++||||||..
T Consensus 1 iigi~G~~GsGKSTl~ 16 (198)
T cd02023 1 IIGIAGGSGSGKTTVA 16 (198)
T ss_pred CEEEECCCCCCHHHHH
Confidence 3678999999999865
No 443
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.35 E-value=0.68 Score=45.97 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=19.1
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++.+.|.|++||||||.+-.
T Consensus 21 i~~Ge~~~l~G~nGsGKSTLl~~ 43 (211)
T cd03298 21 FAQGEITAIVGPSGSGKSTLLNL 43 (211)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 55788999999999999986643
No 444
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=82.32 E-value=1.5 Score=44.04 Aligned_cols=38 Identities=16% Similarity=0.205 Sum_probs=23.9
Q ss_pred cCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecch
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQL 382 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqP 382 (633)
.+..+++.|++|||||+.+-.+.... ...+..++++..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~-~~~~~~~~~i~~ 78 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADA-SYGGRNARYLDA 78 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH-HhCCCcEEEEeh
Confidence 45679999999999997655444432 223334555443
No 445
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=82.26 E-value=0.68 Score=47.30 Aligned_cols=23 Identities=26% Similarity=0.583 Sum_probs=18.9
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++.+.|.|++||||||.+-.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~ 48 (250)
T PRK14247 26 IPDNTITALMGPSGSGKSTLLRV 48 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45688899999999999986543
No 446
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=82.25 E-value=0.71 Score=46.52 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=18.6
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++.+.|.|++||||||.+-.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~ 45 (232)
T cd03218 23 VKQGEIVGLLGPNGAGKTTTFYM 45 (232)
T ss_pred ecCCcEEEEECCCCCCHHHHHHH
Confidence 45778899999999999986543
No 447
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=82.24 E-value=1.3 Score=44.39 Aligned_cols=28 Identities=39% Similarity=0.394 Sum_probs=22.3
Q ss_pred HHcCCeEEEeccCCChhhchHHHHHHHh
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQYLYEA 369 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~Lle~ 369 (633)
+..+.++.|.|++|||||+.+.+.+...
T Consensus 16 ~~~g~v~~I~G~~GsGKT~l~~~ia~~~ 43 (226)
T cd01393 16 IPTGRITEIFGEFGSGKTQLCLQLAVEA 43 (226)
T ss_pred CcCCcEEEEeCCCCCChhHHHHHHHHHh
Confidence 3447899999999999998877766543
No 448
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=82.17 E-value=0.7 Score=46.45 Aligned_cols=23 Identities=22% Similarity=0.505 Sum_probs=18.9
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++.+.|.|++||||||.+-.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~ 45 (227)
T cd03260 23 IPKGEITALIGPSGCGKSTLLRL 45 (227)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45688899999999999986543
No 449
>PRK14532 adenylate kinase; Provisional
Probab=82.07 E-value=1.1 Score=43.59 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=17.5
Q ss_pred eEEEeccCCChhhchHHHHHHHh
Q 035699 347 VLVIVGETGSGKTTQIPQYLYEA 369 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~Lle~ 369 (633)
.+++.|++||||||+.-......
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 37889999999999865554433
No 450
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.05 E-value=0.72 Score=44.37 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=18.7
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++.+.|.|++||||||.+-.
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~ 47 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKL 47 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45778899999999999976543
No 451
>PRK05480 uridine/cytidine kinase; Provisional
Probab=82.05 E-value=0.79 Score=45.55 Aligned_cols=19 Identities=42% Similarity=0.527 Sum_probs=15.5
Q ss_pred CCeEEEeccCCChhhchHH
Q 035699 345 YPVLVIVGETGSGKTTQIP 363 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp 363 (633)
..+|.|+|++||||||..-
T Consensus 6 ~~iI~I~G~sGsGKTTl~~ 24 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVAS 24 (209)
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 4578889999999998653
No 452
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.05 E-value=0.72 Score=46.84 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=18.6
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++.+.|.|++||||||.+-.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~ 47 (239)
T cd03296 25 IPSGELVALLGPSGSGKTTLLRL 47 (239)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 44678899999999999986543
No 453
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=82.04 E-value=0.75 Score=47.29 Aligned_cols=23 Identities=48% Similarity=0.598 Sum_probs=19.1
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..+..+.|.|++||||||.+-.
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~ 44 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKM 44 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHH
Confidence 45678899999999999987643
No 454
>PRK06762 hypothetical protein; Provisional
Probab=82.04 E-value=0.81 Score=43.56 Aligned_cols=20 Identities=45% Similarity=0.697 Sum_probs=15.9
Q ss_pred CeEEEeccCCChhhchHHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~ 365 (633)
..++++|++||||||..-..
T Consensus 3 ~li~i~G~~GsGKST~A~~L 22 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQL 22 (166)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 36888999999999876443
No 455
>PRK08356 hypothetical protein; Provisional
Probab=82.00 E-value=0.79 Score=45.18 Aligned_cols=19 Identities=32% Similarity=0.550 Sum_probs=15.7
Q ss_pred eEEEeccCCChhhchHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~ 365 (633)
.++++|++||||||+.-..
T Consensus 7 ~i~~~G~~gsGK~t~a~~l 25 (195)
T PRK08356 7 IVGVVGKIAAGKTTVAKFF 25 (195)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5788999999999886544
No 456
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=81.98 E-value=19 Score=42.61 Aligned_cols=62 Identities=15% Similarity=0.094 Sum_probs=42.9
Q ss_pred HHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHh
Q 035699 336 EELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEM 398 (633)
Q Consensus 336 ~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~ 398 (633)
++++..... +..++.+|-|.|||+.+...+.......+.+|++|.|+.--+.++..++...+
T Consensus 179 d~~~~~fkq-~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~l 240 (752)
T PHA03333 179 DRIFDEYGK-CYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETVV 240 (752)
T ss_pred HHHHHHHhh-cceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHHH
Confidence 334444443 34677899999999987655443322123489999999988888888776655
No 457
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=81.94 E-value=0.74 Score=45.90 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=18.7
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++.+.|.|++||||||.+-.
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~ 50 (218)
T cd03266 28 VKPGEVTGLLGPNGAGKTTTLRM 50 (218)
T ss_pred EcCCcEEEEECCCCCCHHHHHHH
Confidence 44678899999999999987643
No 458
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=81.93 E-value=0.72 Score=46.26 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=19.0
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++.+.|.|++||||||.+-.
T Consensus 31 i~~Ge~~~l~G~nGsGKSTLl~~ 53 (224)
T TIGR02324 31 VNAGECVALSGPSGAGKSTLLKS 53 (224)
T ss_pred ECCCCEEEEECCCCCCHHHHHHH
Confidence 45788999999999999986543
No 459
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=81.92 E-value=0.72 Score=46.04 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=19.1
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++.+.|.|++||||||.+-.
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~ 49 (220)
T cd03245 27 IRAGEKVAIIGRVGSGKSTLLKL 49 (220)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45788999999999999986543
No 460
>PHA02533 17 large terminase protein; Provisional
Probab=81.90 E-value=4 Score=46.92 Aligned_cols=70 Identities=17% Similarity=0.254 Sum_probs=54.8
Q ss_pred ccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHH-hccccCCeeeecchhHHHHHHHHHHHHH
Q 035699 327 KTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYE-AGYTKQGKIGCTQLRRVAAMSVAARVSQ 396 (633)
Q Consensus 327 ~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle-~~~~~~gkilitqPrR~aA~qva~rva~ 396 (633)
..+++.++|..++..+..++..++.-+-..|||+.+..+++. .....+..++|+.|++..|..+..++..
T Consensus 56 ~Pf~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~ 126 (534)
T PHA02533 56 IKVQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQ 126 (534)
T ss_pred eecCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 357899999999998877777788888999999987755443 3333344899999999999998877654
No 461
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=81.86 E-value=0.66 Score=44.04 Aligned_cols=17 Identities=41% Similarity=0.690 Sum_probs=13.3
Q ss_pred EEEeccCCChhhchHHH
Q 035699 348 LVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 348 vIi~a~TGSGKTt~lp~ 364 (633)
++++|++||||||..-.
T Consensus 1 i~l~G~~GsGKSTla~~ 17 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASA 17 (163)
T ss_pred CEEECCCCCCHHHHHHH
Confidence 46789999999976543
No 462
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=81.82 E-value=0.72 Score=46.10 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=18.8
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++.+.|.|++||||||.+-.
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~ 56 (214)
T PRK13543 34 VDAGEALLVQGDNGAGKTTLLRV 56 (214)
T ss_pred ECCCCEEEEEcCCCCCHHHHHHH
Confidence 45788899999999999976543
No 463
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.82 E-value=0.76 Score=43.42 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=17.8
Q ss_pred HHcCCeEEEeccCCChhhchHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIP 363 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp 363 (633)
+..++.+.|.|++||||||.+-
T Consensus 22 i~~g~~~~i~G~nGsGKStll~ 43 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLR 43 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 3467889999999999997543
No 464
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=81.78 E-value=0.77 Score=44.11 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=18.9
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++.+.|.|++||||||.+-.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~ 46 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRA 46 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHH
Confidence 45788899999999999986543
No 465
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=81.77 E-value=0.74 Score=44.70 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=18.5
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++.+.|.|++||||||.+-.
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~ 44 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKT 44 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHH
Confidence 44678899999999999976543
No 466
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=81.69 E-value=0.74 Score=46.54 Aligned_cols=23 Identities=39% Similarity=0.637 Sum_probs=18.7
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..+..+.|.|++||||||.+-.
T Consensus 32 i~~Ge~~~l~G~nGsGKSTLl~~ 54 (233)
T PRK11629 32 IGEGEMMAIVGSSGSGKSTLLHL 54 (233)
T ss_pred EcCCcEEEEECCCCCCHHHHHHH
Confidence 45778899999999999986543
No 467
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=81.68 E-value=0.76 Score=45.88 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=18.3
Q ss_pred HHcCCeEEEeccCCChhhchHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIP 363 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp 363 (633)
+..+..+.|.|+.||||||.+-
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~ 46 (220)
T cd03263 25 VYKGEIFGLLGHNGAGKTTTLK 46 (220)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 4577889999999999997654
No 468
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=81.65 E-value=1.2 Score=43.45 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=18.9
Q ss_pred CCeEEEeccCCChhhchHHHHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLYE 368 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Lle 368 (633)
+..+|++||+||||+|..-..+..
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~ 25 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQE 25 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhc
Confidence 356899999999999876655544
No 469
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=81.57 E-value=0.75 Score=45.39 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=19.1
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++.+.|.|+.||||||.+-.
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~ 46 (200)
T PRK13540 24 LPAGGLLHLKGSNGAGKTTLLKL 46 (200)
T ss_pred ECCCCEEEEECCCCCCHHHHHHH
Confidence 45778899999999999987653
No 470
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=81.57 E-value=1.7 Score=46.79 Aligned_cols=40 Identities=25% Similarity=0.263 Sum_probs=28.1
Q ss_pred HHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecch
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQL 382 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqP 382 (633)
+-.+.++.|.||+|||||+...+++.... ..++.++++.+
T Consensus 52 lp~G~iteI~Gp~GsGKTtLal~~~~~~~-~~g~~~vyId~ 91 (325)
T cd00983 52 YPKGRIIEIYGPESSGKTTLALHAIAEAQ-KLGGTVAFIDA 91 (325)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEECc
Confidence 44468899999999999988877776542 23445555543
No 471
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=81.51 E-value=0.75 Score=45.28 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=18.6
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..+..+.|.|++||||||.+-.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~ 45 (198)
T TIGR01189 23 LNAGEALQVTGPNGIGKTTLLRI 45 (198)
T ss_pred EcCCcEEEEECCCCCCHHHHHHH
Confidence 45678899999999999976543
No 472
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=81.51 E-value=1.2 Score=43.67 Aligned_cols=33 Identities=33% Similarity=0.479 Sum_probs=23.3
Q ss_pred CChHHHHHHHHHHHcC--CeEEEeccCCChhhchH
Q 035699 330 PIYPFREELLQAVSEY--PVLVIVGETGSGKTTQI 362 (633)
Q Consensus 330 Pi~~~q~~il~al~~~--~~vIi~a~TGSGKTt~l 362 (633)
|+|..-..++..+.++ ..+++.|+||||||..+
T Consensus 7 Pvf~~~~~~v~~~~~G~n~~i~~yG~tGsGKT~Tm 41 (186)
T cd01363 7 PVFRDVGPLLQSALDGYNVCIFAYGQTGSGKTYTM 41 (186)
T ss_pred cHHHHHHHHHHHHhCCcceeEEEECCCCCcceEec
Confidence 4555544667777776 44677899999999654
No 473
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=81.49 E-value=4 Score=50.25 Aligned_cols=77 Identities=21% Similarity=0.309 Sum_probs=65.4
Q ss_pred CCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCC-Cee-EEEeCCccccCCCCCCc
Q 035699 519 GDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEG-ARK-VVLATNIAETSLTIDGI 596 (633)
Q Consensus 519 g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g-~rk-VLvATdIAerGLdIp~V 596 (633)
..+||||.=+..++.+.+-|.+.. .+.+....+-|..|+..|.++.+.|-++ ... .+++|-|-.-||+..|.
T Consensus 1341 HRiLIFcQlK~mlDlVekDL~k~~------mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGA 1414 (1549)
T KOG0392|consen 1341 HRILIFCQLKSMLDLVEKDLFKKY------MPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGA 1414 (1549)
T ss_pred ceeEEeeeHHHHHHHHHHHHhhhh------cCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCC
Confidence 469999999999999988776642 3567777999999999999999999877 444 46789999999999999
Q ss_pred cEEEe
Q 035699 597 KYVID 601 (633)
Q Consensus 597 ~~VID 601 (633)
+.||=
T Consensus 1415 DTVVF 1419 (1549)
T KOG0392|consen 1415 DTVVF 1419 (1549)
T ss_pred ceEEE
Confidence 99994
No 474
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=81.47 E-value=1.6 Score=53.05 Aligned_cols=89 Identities=18% Similarity=0.068 Sum_probs=50.1
Q ss_pred HHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHH--HHHHHHHHhCCcccceEeeeeeccc-
Q 035699 338 LLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMS--VAARVSQEMGVKLGHEVGYSIRFED- 414 (633)
Q Consensus 338 il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~q--va~rva~e~g~~vg~~VGy~ir~e~- 414 (633)
++-.+.=|+--|..=.||=|||++..+|++-..++..|--+||.---+|.+. .-..+...+|.. ||+.....+
T Consensus 144 LiGgivLh~G~IAEM~TGEGKTLvatlp~yLnAL~G~gVHvVTvNDYLA~RDaewm~p~y~flGLt----Vg~i~~~~~~ 219 (1025)
T PRK12900 144 LIGGIVLHSGKISEMATGEGKTLVSTLPTFLNALTGRGVHVVTVNDYLAQRDKEWMNPVFEFHGLS----VGVILNTMRP 219 (1025)
T ss_pred HhhhHHhhcCCccccCCCCCcchHhHHHHHHHHHcCCCcEEEeechHhhhhhHHHHHHHHHHhCCe----eeeeCCCCCH
Confidence 5555544555577889999999876655554556666655666554443221 122344455554 553322111
Q ss_pred ---ccCCCCcEEEeCchHH
Q 035699 415 ---CTSDKTVLKYMTDGML 430 (633)
Q Consensus 415 ---~~s~~t~Iiv~TpGrL 430 (633)
+..=.++|+|||..=+
T Consensus 220 ~~Rr~aY~~DItYgTn~Ef 238 (1025)
T PRK12900 220 EERREQYLCDITYGTNNEF 238 (1025)
T ss_pred HHHHHhCCCcceecCCCcc
Confidence 1123589999998643
No 475
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=81.46 E-value=1.2 Score=52.42 Aligned_cols=42 Identities=14% Similarity=0.127 Sum_probs=29.4
Q ss_pred cCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHH
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVA 386 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~a 386 (633)
+.+.++|.|-||||||+++...|-. ...++.+++|.-|.-..
T Consensus 184 E~~H~li~GttGSGKS~~i~~LL~~-ir~RGdrAIIyD~~GeF 225 (732)
T PRK13700 184 EIQNFCLHGTVGAGKSEVIRRLANY-ARQRGDMVVIYDRSGEF 225 (732)
T ss_pred hhcceEEeCCCCCCHHHHHHHHHHH-HHHcCCeEEEEeCCCch
Confidence 4567999999999999988766553 23344477777665544
No 476
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=81.45 E-value=0.78 Score=46.62 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=18.9
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++.+.|.|++||||||.+-.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~ 47 (242)
T PRK11124 25 CPQGETLVLLGPSGAGKSSLLRV 47 (242)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45788899999999999976544
No 477
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.42 E-value=0.82 Score=46.72 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=19.1
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++.+.|.|++||||||.+-.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~ 48 (250)
T PRK14262 26 IFKNQITAIIGPSGCGKTTLLRS 48 (250)
T ss_pred ecCCCEEEEECCCCCCHHHHHHH
Confidence 45788899999999999986543
No 478
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=81.40 E-value=8.8 Score=44.52 Aligned_cols=58 Identities=14% Similarity=0.180 Sum_probs=46.7
Q ss_pred CCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCC
Q 035699 519 GDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATN 585 (633)
Q Consensus 519 g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATd 585 (633)
..+||.+||++-+..+++.+...... .++.+..+||+.+...+...+.. ...|||+|+
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~~-----~~i~v~~l~Gg~~~~~q~~~l~~----~~dIiV~TP 142 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGAD-----LGLRFALVYGGVDYDKQRELLQQ----GVDVIIATP 142 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhcc-----CCceEEEEECCCCHHHHHHHHhC----CCCEEEECH
Confidence 57999999999999999888765322 36789999999998888777653 357999995
No 479
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=81.39 E-value=0.76 Score=47.39 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=19.3
Q ss_pred HHcCCeEEEeccCCChhhchHHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
+..+..+.|.|++||||||.+-..
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l 47 (255)
T PRK11248 24 LESGELLVVLGPSGCGKTTLLNLI 47 (255)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHH
Confidence 456788999999999999765443
No 480
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=81.37 E-value=0.77 Score=45.50 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=18.7
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..+..+.|.|++||||||.+-.
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~ 46 (204)
T PRK13538 24 LNAGELVQIEGPNGAGKTSLLRI 46 (204)
T ss_pred ECCCcEEEEECCCCCCHHHHHHH
Confidence 45678899999999999976543
No 481
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=81.34 E-value=1.1 Score=47.77 Aligned_cols=21 Identities=48% Similarity=0.574 Sum_probs=16.7
Q ss_pred CeEEEeccCCChhhchHHHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~L 366 (633)
.+++|+||||||||+......
T Consensus 5 ~~i~i~GptgsGKt~la~~la 25 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELA 25 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHH
Confidence 578999999999997655443
No 482
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=81.31 E-value=0.79 Score=46.15 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=18.7
Q ss_pred HHcCCeEEEeccCCChhhchHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIP 363 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp 363 (633)
+..++.+.|.|+.||||||.+-
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~ 44 (230)
T TIGR03410 23 VPKGEVTCVLGRNGVGKTTLLK 44 (230)
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 5578899999999999997654
No 483
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=81.26 E-value=0.78 Score=46.96 Aligned_cols=22 Identities=50% Similarity=0.611 Sum_probs=18.5
Q ss_pred HHcCCeEEEeccCCChhhchHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIP 363 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp 363 (633)
+..++.+.|.|++||||||.+-
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~ 47 (253)
T TIGR02323 26 LYPGEVLGIVGESGSGKSTLLG 47 (253)
T ss_pred EeCCcEEEEECCCCCCHHHHHH
Confidence 4578889999999999998654
No 484
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=81.19 E-value=0.82 Score=46.29 Aligned_cols=23 Identities=22% Similarity=0.522 Sum_probs=18.8
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..+..+.|.|++||||||.+-.
T Consensus 8 i~~Ge~~~i~G~nGsGKSTLl~~ 30 (230)
T TIGR01184 8 IQQGEFISLIGHSGCGKSTLLNL 30 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45678899999999999986543
No 485
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=81.19 E-value=5.1 Score=45.23 Aligned_cols=59 Identities=19% Similarity=0.299 Sum_probs=49.4
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCC
Q 035699 518 IGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATN 585 (633)
Q Consensus 518 ~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATd 585 (633)
-..+||.|||++-+-.++...++.+.. ..+.||..-|||+-..|..++..-| .|||||+
T Consensus 252 ~TRVLVL~PTRELaiQv~sV~~qlaqF-----t~I~~~L~vGGL~lk~QE~~LRs~P----DIVIATP 310 (691)
T KOG0338|consen 252 ATRVLVLVPTRELAIQVHSVTKQLAQF-----TDITVGLAVGGLDLKAQEAVLRSRP----DIVIATP 310 (691)
T ss_pred ceeEEEEeccHHHHHHHHHHHHHHHhh-----ccceeeeeecCccHHHHHHHHhhCC----CEEEecc
Confidence 357999999999988888888776543 3678888999999999999997664 6999998
No 486
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=81.17 E-value=22 Score=42.07 Aligned_cols=32 Identities=31% Similarity=0.582 Sum_probs=23.9
Q ss_pred cCCChHHHHHHHHHHH--------cCCeEEEeccCCChhh
Q 035699 328 TLPIYPFREELLQAVS--------EYPVLVIVGETGSGKT 359 (633)
Q Consensus 328 ~LPi~~~q~~il~al~--------~~~~vIi~a~TGSGKT 359 (633)
..-+..+++.|++.+. .+.++.++||+|.|||
T Consensus 325 HYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKT 364 (782)
T COG0466 325 HYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKT 364 (782)
T ss_pred ccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCch
Confidence 4455566777776664 5577888999999999
No 487
>PRK08727 hypothetical protein; Validated
Probab=81.14 E-value=1.8 Score=44.10 Aligned_cols=36 Identities=22% Similarity=0.166 Sum_probs=22.1
Q ss_pred CeEEEeccCCChhhchHHHHHHHhccccCCeeeecch
Q 035699 346 PVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQL 382 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqP 382 (633)
+.+++.|++|||||..+-.+.... ...+.+++++..
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~-~~~~~~~~y~~~ 77 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAA-EQAGRSSAYLPL 77 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH-HHcCCcEEEEeH
Confidence 559999999999996544433332 222225666543
No 488
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=81.14 E-value=0.82 Score=47.14 Aligned_cols=24 Identities=25% Similarity=0.606 Sum_probs=19.5
Q ss_pred HHcCCeEEEeccCCChhhchHHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
+..++.+.|.|++||||||.+-..
T Consensus 36 i~~Ge~~~i~G~nGsGKSTLl~~l 59 (260)
T PRK10744 36 IAKNQVTAFIGPSGCGKSTLLRTF 59 (260)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 557889999999999999865443
No 489
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=81.13 E-value=0.82 Score=46.19 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=18.7
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++.+.|.|++||||||.+-.
T Consensus 9 i~~Ge~~~i~G~nGsGKSTLl~~ 31 (230)
T TIGR02770 9 LKRGEVLALVGESGSGKSLTCLA 31 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45688899999999999976543
No 490
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=81.10 E-value=1.8 Score=41.20 Aligned_cols=48 Identities=23% Similarity=0.247 Sum_probs=32.8
Q ss_pred HHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHH
Q 035699 335 REELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVA 386 (633)
Q Consensus 335 q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~a 386 (633)
-+.+-.++..+.+|++.|+=|+||||..--++..-+. ..-|+.||--+
T Consensus 15 g~~l~~~l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~----~~~V~SPTFtl 62 (149)
T COG0802 15 GERLAEALKAGDVVLLSGDLGAGKTTLVRGIAKGLGV----DGNVKSPTFTL 62 (149)
T ss_pred HHHHHhhCCCCCEEEEEcCCcCChHHHHHHHHHHcCC----CCcccCCCeee
Confidence 3455667788999999999999999754434333222 34577887544
No 491
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=81.08 E-value=2.2 Score=46.38 Aligned_cols=61 Identities=21% Similarity=0.144 Sum_probs=42.8
Q ss_pred HHHHccCCChHHHHHHHHHHHcC--CeEEEeccCCChhhchHHHHHHHhccccCC--eeeecchh
Q 035699 323 QEERKTLPIYPFREELLQAVSEY--PVLVIVGETGSGKTTQIPQYLYEAGYTKQG--KIGCTQLR 383 (633)
Q Consensus 323 ~~~r~~LPi~~~q~~il~al~~~--~~vIi~a~TGSGKTt~lp~~Lle~~~~~~g--kilitqPr 383 (633)
++.+-.-|-..+|.-.++++... ..|.+.|+-|||||...+-.-++.-..++. +|+++-|+
T Consensus 221 ~~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~ 285 (436)
T COG1875 221 QEVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPT 285 (436)
T ss_pred hhhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCC
Confidence 44567789999999999999986 457778999999996433322222122222 79998886
No 492
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.95 E-value=0.76 Score=45.17 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=18.8
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++.+.|.|++||||||.+-.
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~ 52 (192)
T cd03232 30 VKPGTLTALMGESGAGKTTLLDV 52 (192)
T ss_pred EeCCcEEEEECCCCCCHHHHHHH
Confidence 45678899999999999986544
No 493
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=80.90 E-value=0.83 Score=46.61 Aligned_cols=23 Identities=26% Similarity=0.577 Sum_probs=19.1
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++++.|.|++||||||.+-.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~ 46 (247)
T TIGR00972 24 IPKNQVTALIGPSGCGKSTLLRS 46 (247)
T ss_pred ECCCCEEEEECCCCCCHHHHHHH
Confidence 45788999999999999986543
No 494
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=80.90 E-value=0.84 Score=43.71 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=19.5
Q ss_pred HHcCCeEEEeccCCChhhchHHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
+..++.+.+.|+.||||||.+-..
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i 46 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKIL 46 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHH
Confidence 557888999999999999876533
No 495
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=80.86 E-value=1.1 Score=43.27 Aligned_cols=19 Identities=42% Similarity=0.539 Sum_probs=15.3
Q ss_pred cCCeEEEeccCCChhhchH
Q 035699 344 EYPVLVIVGETGSGKTTQI 362 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~l 362 (633)
+..+.+|.|++|+||||.+
T Consensus 18 ~~g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 18 SPGLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp -SEEEEEEESTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 3457889999999999864
No 496
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=80.84 E-value=2 Score=47.70 Aligned_cols=58 Identities=16% Similarity=0.147 Sum_probs=36.5
Q ss_pred HHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHH
Q 035699 336 EELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARV 394 (633)
Q Consensus 336 ~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rv 394 (633)
+.++.-+..++.++|.|.||+|||+.....+.......+.+|++.. ....+.++..|+
T Consensus 185 D~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS-lEm~~~~l~~Rl 242 (421)
T TIGR03600 185 DRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS-LEMSAEQLGERL 242 (421)
T ss_pred HHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE-CCCCHHHHHHHH
Confidence 3444567778999999999999998877776554333333565543 122234444444
No 497
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=80.78 E-value=1.3 Score=49.85 Aligned_cols=40 Identities=23% Similarity=0.294 Sum_probs=28.9
Q ss_pred HHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecc
Q 035699 341 AVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQ 381 (633)
Q Consensus 341 al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitq 381 (633)
-+..+.+++|.|++|+||||.+.+++.... ..+++++++.
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a-~~g~kvlYvs 129 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLA-KNQMKVLYVS 129 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHH-hcCCcEEEEE
Confidence 345578999999999999999888876542 2334666644
No 498
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=80.70 E-value=1.2 Score=43.12 Aligned_cols=20 Identities=35% Similarity=0.584 Sum_probs=15.8
Q ss_pred EEEeccCCChhhchHHHHHH
Q 035699 348 LVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 348 vIi~a~TGSGKTt~lp~~Ll 367 (633)
|+|.|++||||||+.-....
T Consensus 2 I~i~G~pGsGKst~a~~La~ 21 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAK 21 (194)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78899999999987654433
No 499
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=80.67 E-value=0.86 Score=44.31 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=18.0
Q ss_pred HHcCCeEEEeccCCChhhchHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIP 363 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp 363 (633)
+..++.+.|.|++||||||.+-
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~ 44 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAE 44 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 4467889999999999997554
No 500
>PRK14528 adenylate kinase; Provisional
Probab=80.66 E-value=1.4 Score=43.20 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=16.3
Q ss_pred eEEEeccCCChhhchHHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~L 366 (633)
.++|.|++||||||+.-...
T Consensus 3 ~i~i~G~pGsGKtt~a~~la 22 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILC 22 (186)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999998865443
Done!