Query 035699
Match_columns 633
No_of_seqs 355 out of 1481
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 08:50:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035699.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035699hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 100.0 4.3E-50 1.5E-54 468.7 29.5 316 318-633 82-425 (773)
2 2va8_A SSO2462, SKI2-type heli 100.0 1.2E-37 4E-42 361.0 18.5 293 330-633 30-387 (715)
3 2p6r_A Afuhel308 helicase; pro 100.0 1.7E-36 5.8E-41 350.8 18.0 288 330-633 25-367 (702)
4 2zj8_A DNA helicase, putative 100.0 1.1E-34 3.6E-39 336.7 18.6 294 326-633 19-366 (720)
5 2db3_A ATP-dependent RNA helic 100.0 6.9E-33 2.3E-37 303.2 23.1 273 330-616 78-390 (434)
6 3l9o_A ATP-dependent RNA helic 100.0 2.1E-33 7.2E-38 338.6 17.5 291 326-633 180-576 (1108)
7 3fht_A ATP-dependent RNA helic 100.0 2E-32 7E-37 293.2 23.0 270 327-608 44-347 (412)
8 3o8b_A HCV NS3 protease/helica 100.0 1.3E-33 4.4E-38 322.1 12.8 265 323-633 210-497 (666)
9 3eiq_A Eukaryotic initiation f 100.0 5.4E-33 1.8E-37 298.2 16.9 278 326-616 58-370 (414)
10 2jlq_A Serine protease subunit 100.0 1.3E-33 4.5E-38 310.9 10.6 261 335-633 9-291 (451)
11 3fmp_B ATP-dependent RNA helic 100.0 8.1E-33 2.8E-37 305.2 15.2 278 327-616 111-429 (479)
12 3pey_A ATP-dependent RNA helic 100.0 2.2E-31 7.4E-36 282.8 24.6 267 327-606 24-322 (395)
13 2i4i_A ATP-dependent RNA helic 100.0 1.3E-30 4.5E-35 280.3 24.3 276 326-615 33-365 (417)
14 2j0s_A ATP-dependent RNA helic 100.0 1.8E-31 6.3E-36 287.0 17.0 273 330-615 59-365 (410)
15 2z83_A Helicase/nucleoside tri 100.0 7.8E-32 2.7E-36 297.5 13.0 258 338-633 14-293 (459)
16 2whx_A Serine protease/ntpase/ 100.0 2E-31 6.9E-36 304.2 13.1 267 326-633 170-458 (618)
17 3i5x_A ATP-dependent RNA helic 100.0 1.3E-30 4.6E-35 292.9 19.6 282 329-616 93-432 (563)
18 1hv8_A Putative ATP-dependent 100.0 9.2E-30 3.2E-34 267.6 24.0 265 327-607 25-318 (367)
19 1s2m_A Putative ATP-dependent 100.0 2.5E-29 8.6E-34 269.1 26.6 264 330-607 43-338 (400)
20 1xti_A Probable ATP-dependent 100.0 1.5E-29 5.1E-34 269.4 24.7 266 330-608 30-331 (391)
21 3sqw_A ATP-dependent RNA helic 100.0 3.4E-30 1.2E-34 291.6 19.4 279 331-616 44-381 (579)
22 2xgj_A ATP-dependent RNA helic 100.0 5E-30 1.7E-34 306.8 21.5 288 328-632 84-477 (1010)
23 4a4z_A Antiviral helicase SKI2 100.0 4E-30 1.4E-34 307.5 18.7 291 328-633 37-471 (997)
24 1fuu_A Yeast initiation factor 100.0 4.3E-30 1.5E-34 273.5 11.2 277 327-616 40-349 (394)
25 2v6i_A RNA helicase; membrane, 100.0 1.4E-29 4.9E-34 277.2 15.6 251 344-633 1-271 (431)
26 2ykg_A Probable ATP-dependent 100.0 1.9E-28 6.3E-33 282.1 24.9 282 329-616 12-501 (696)
27 2v1x_A ATP-dependent DNA helic 100.0 4.8E-29 1.6E-33 283.4 19.5 271 330-615 44-356 (591)
28 3oiy_A Reverse gyrase helicase 100.0 2.6E-29 8.8E-34 271.7 16.4 266 322-615 13-343 (414)
29 2z0m_A 337AA long hypothetical 100.0 2.1E-28 7.2E-33 254.6 21.5 257 328-608 14-297 (337)
30 3tbk_A RIG-I helicase domain; 100.0 5E-28 1.7E-32 268.7 25.7 288 329-616 3-492 (555)
31 1yks_A Genome polyprotein [con 100.0 4.2E-29 1.4E-33 274.3 14.8 255 341-633 4-279 (440)
32 3fho_A ATP-dependent RNA helic 100.0 1.1E-29 3.8E-34 283.4 9.3 265 330-606 141-436 (508)
33 4a2p_A RIG-I, retinoic acid in 100.0 3.5E-28 1.2E-32 270.7 19.4 288 328-616 5-493 (556)
34 2wv9_A Flavivirin protease NS2 100.0 3E-28 1E-32 280.2 14.6 255 341-633 237-513 (673)
35 4gl2_A Interferon-induced heli 99.9 2.6E-28 9E-33 280.9 11.4 287 326-615 3-503 (699)
36 1oyw_A RECQ helicase, ATP-depe 99.9 2E-27 7E-32 266.3 15.8 267 330-615 25-325 (523)
37 4ddu_A Reverse gyrase; topoiso 99.9 2E-27 6.9E-32 286.5 16.4 266 327-619 75-406 (1104)
38 4a2q_A RIG-I, retinoic acid in 99.9 9.2E-27 3.2E-31 273.1 19.9 288 328-616 246-734 (797)
39 1gku_B Reverse gyrase, TOP-RG; 99.9 1.5E-27 5.3E-32 287.0 10.3 250 327-605 54-352 (1054)
40 4f92_B U5 small nuclear ribonu 99.9 4.7E-26 1.6E-30 284.0 22.6 272 331-602 927-1264(1724)
41 1wp9_A ATP-dependent RNA helic 99.9 1.6E-26 5.4E-31 249.9 15.9 270 328-607 7-449 (494)
42 3rc3_A ATP-dependent RNA helic 99.9 2.4E-26 8.2E-31 264.2 14.1 251 341-633 151-423 (677)
43 4a2w_A RIG-I, retinoic acid in 99.9 2.2E-25 7.5E-30 265.7 21.1 290 326-616 244-734 (936)
44 4f92_B U5 small nuclear ribonu 99.9 1.5E-25 5.2E-30 279.4 18.3 293 331-632 80-451 (1724)
45 1tf5_A Preprotein translocase 99.9 2.9E-25 1E-29 256.2 17.6 273 328-616 81-528 (844)
46 1gm5_A RECG; helicase, replica 99.9 7.3E-26 2.5E-30 263.8 11.3 262 328-606 366-668 (780)
47 2eyq_A TRCF, transcription-rep 99.9 2.5E-24 8.6E-29 260.9 25.0 254 331-603 604-890 (1151)
48 3llm_A ATP-dependent RNA helic 99.9 6.4E-25 2.2E-29 220.6 14.7 162 319-482 50-235 (235)
49 2fsf_A Preprotein translocase 99.9 1.5E-23 5.1E-28 241.6 18.9 88 518-616 441-566 (853)
50 2oca_A DAR protein, ATP-depend 99.9 6.2E-23 2.1E-27 227.8 17.6 265 329-607 112-428 (510)
51 2fwr_A DNA repair protein RAD2 99.9 1.7E-23 5.7E-28 230.2 12.6 252 328-607 91-424 (472)
52 1nkt_A Preprotein translocase 99.9 7.4E-23 2.5E-27 236.3 16.4 248 329-596 110-527 (922)
53 3h1t_A Type I site-specific re 99.9 1.1E-21 3.8E-26 222.1 14.0 271 330-609 178-531 (590)
54 3dmq_A RNA polymerase-associat 99.8 1.1E-18 3.7E-23 208.7 13.1 271 329-608 152-587 (968)
55 3fmo_B ATP-dependent RNA helic 99.7 1.7E-17 5.7E-22 173.1 15.9 156 327-482 111-297 (300)
56 3jux_A Protein translocase sub 99.7 2.5E-17 8.7E-22 187.0 14.7 146 457-616 411-570 (822)
57 3iuy_A Probable ATP-dependent 99.7 3.7E-17 1.3E-21 162.3 13.5 147 329-477 41-223 (228)
58 1qde_A EIF4A, translation init 99.7 1.8E-16 6E-21 156.6 16.7 160 327-487 33-221 (224)
59 3ber_A Probable ATP-dependent 99.7 1.2E-16 4.3E-21 161.7 15.6 156 326-482 61-247 (249)
60 2w00_A HSDR, R.ECOR124I; ATP-b 99.7 8.3E-17 2.8E-21 192.5 16.2 273 330-607 271-678 (1038)
61 1z63_A Helicase of the SNF2/RA 99.7 7.4E-17 2.5E-21 178.4 14.5 266 329-608 36-425 (500)
62 3dkp_A Probable ATP-dependent 99.7 1.7E-16 5.7E-21 159.3 15.2 155 329-484 50-242 (245)
63 2pl3_A Probable ATP-dependent 99.7 3E-16 1E-20 156.5 16.7 158 326-484 43-234 (236)
64 1q0u_A Bstdead; DEAD protein, 99.7 2.5E-16 8.6E-21 155.5 15.8 156 327-482 23-211 (219)
65 3fe2_A Probable ATP-dependent 99.7 7.6E-17 2.6E-21 161.9 11.8 153 330-483 51-238 (242)
66 2oxc_A Probable ATP-dependent 99.7 1.6E-16 5.4E-21 158.4 13.7 152 330-481 46-227 (230)
67 1vec_A ATP-dependent RNA helic 99.7 3.4E-16 1.2E-20 152.3 15.7 147 329-475 24-200 (206)
68 3bor_A Human initiation factor 99.7 2.6E-16 8.8E-21 157.7 14.6 151 330-481 52-233 (237)
69 3ly5_A ATP-dependent RNA helic 99.7 1.8E-16 6.2E-21 161.7 12.1 153 327-480 73-260 (262)
70 2gxq_A Heat resistant RNA depe 99.6 2E-15 6.8E-20 146.8 16.1 152 327-481 20-204 (207)
71 1t6n_A Probable ATP-dependent 99.6 1.5E-15 5.1E-20 149.7 15.2 151 330-480 36-218 (220)
72 1wrb_A DJVLGB; RNA helicase, D 99.6 1.6E-15 5.4E-20 153.0 15.5 152 330-482 45-239 (253)
73 3eaq_A Heat resistant RNA depe 99.6 2.9E-16 9.8E-21 155.6 7.7 112 491-615 8-120 (212)
74 3i32_A Heat resistant RNA depe 99.6 6.5E-16 2.2E-20 161.4 7.5 115 489-616 3-118 (300)
75 2ipc_A Preprotein translocase 99.6 7.4E-14 2.5E-18 161.4 22.2 114 330-447 79-207 (997)
76 1c4o_A DNA nucleotide excision 99.6 8.7E-14 3E-18 160.1 21.5 78 518-604 439-516 (664)
77 1fuk_A Eukaryotic initiation f 99.5 1.5E-14 5.1E-19 137.1 10.7 116 489-616 4-120 (165)
78 2hjv_A ATP-dependent RNA helic 99.5 1.3E-14 4.5E-19 137.3 9.7 116 488-616 9-125 (163)
79 2rb4_A ATP-dependent RNA helic 99.5 1.5E-14 5.1E-19 138.4 9.3 106 488-605 7-112 (175)
80 1t5i_A C_terminal domain of A 99.5 1.1E-14 3.7E-19 139.4 8.0 113 488-613 5-118 (172)
81 1z3i_X Similar to RAD54-like; 99.5 2.9E-13 9.8E-18 155.3 18.5 83 517-608 415-500 (644)
82 3mwy_W Chromo domain-containin 99.5 1.8E-13 6.3E-18 160.6 15.3 81 518-607 572-655 (800)
83 3b6e_A Interferon-induced heli 99.5 1.2E-13 4.2E-18 134.4 10.9 120 326-447 29-167 (216)
84 2p6n_A ATP-dependent RNA helic 99.5 4.1E-14 1.4E-18 138.0 6.7 130 472-615 10-143 (191)
85 2jgn_A DBX, DDX3, ATP-dependen 99.4 1.1E-13 3.7E-18 134.2 6.5 114 488-614 19-134 (185)
86 2vl7_A XPD; helicase, unknown 99.4 3E-13 1E-17 152.0 10.6 94 503-612 370-469 (540)
87 2yjt_D ATP-dependent RNA helic 99.1 2.4E-14 8.3E-19 136.4 0.0 102 506-616 18-120 (170)
88 2d7d_A Uvrabc system protein B 99.4 1.3E-12 4.5E-17 150.2 12.8 133 455-604 386-522 (661)
89 1rif_A DAR protein, DNA helica 99.3 2.2E-12 7.6E-17 132.3 9.8 134 329-465 112-262 (282)
90 3crv_A XPD/RAD3 related DNA he 99.2 1E-09 3.4E-14 123.5 22.2 96 500-612 376-478 (551)
91 2fz4_A DNA repair protein RAD2 99.2 6.1E-11 2.1E-15 119.2 9.1 125 329-466 92-229 (237)
92 1x4q_A U4/U6 small nuclear rib 98.9 1.3E-09 4.5E-14 93.7 6.1 63 5-70 16-78 (92)
93 1z5z_A Helicase of the SNF2/RA 98.8 6.7E-09 2.3E-13 106.6 7.8 91 517-615 111-204 (271)
94 4a15_A XPD helicase, ATP-depen 97.6 5.8E-05 2E-09 86.0 7.4 94 501-608 432-529 (620)
95 3v53_A RNA-binding protein 25; 97.5 0.00012 4.1E-09 65.3 5.4 61 6-69 46-106 (119)
96 1mp1_A Ser/Arg-related nuclear 97.3 0.00048 1.6E-08 60.8 7.0 62 6-69 24-86 (111)
97 4b3f_X DNA-binding protein smu 97.3 0.00035 1.2E-08 79.8 7.9 62 334-396 194-255 (646)
98 2gk6_A Regulator of nonsense t 96.9 0.0014 4.8E-08 74.6 7.9 66 331-396 181-246 (624)
99 1w36_D RECD, exodeoxyribonucle 96.8 0.0017 5.6E-08 73.8 7.7 64 333-396 152-218 (608)
100 2xzl_A ATP-dependent helicase 96.6 0.0021 7E-08 75.4 7.1 65 332-396 362-426 (802)
101 2wjy_A Regulator of nonsense t 96.6 0.003 1E-07 74.0 7.8 65 332-396 358-422 (800)
102 4a15_A XPD helicase, ATP-depen 96.4 0.0091 3.1E-07 67.9 9.9 20 456-475 376-396 (620)
103 3e1s_A Exodeoxyribonuclease V, 96.2 0.0066 2.2E-07 68.5 7.4 63 330-393 189-251 (574)
104 3lfu_A DNA helicase II; SF1 he 96.1 0.0059 2E-07 69.1 6.5 69 331-401 10-81 (647)
105 3upu_A ATP-dependent DNA helic 96.0 0.0077 2.6E-07 65.8 6.4 62 332-394 27-94 (459)
106 1uaa_A REP helicase, protein ( 95.3 0.017 5.8E-07 66.0 6.3 67 331-400 3-73 (673)
107 3u4q_A ATP-dependent helicase/ 95.2 0.013 4.4E-07 71.9 5.3 68 329-398 9-81 (1232)
108 1pjr_A PCRA; DNA repair, DNA r 94.7 0.032 1.1E-06 64.5 6.5 68 331-400 12-82 (724)
109 3ec2_A DNA replication protein 93.7 0.093 3.2E-06 49.0 6.3 24 344-367 37-60 (180)
110 2b8t_A Thymidine kinase; deoxy 93.4 0.038 1.3E-06 54.7 3.2 40 343-383 10-49 (223)
111 2o0j_A Terminase, DNA packagin 93.3 0.16 5.6E-06 54.3 8.0 69 328-396 161-230 (385)
112 3cpe_A Terminase, DNA packagin 93.1 0.16 5.6E-06 57.2 8.1 71 328-398 161-232 (592)
113 2orw_A Thymidine kinase; TMTK, 93.0 0.058 2E-06 51.4 3.7 39 344-383 2-40 (184)
114 2eyu_A Twitching motility prot 92.5 0.055 1.9E-06 54.6 2.9 24 342-365 22-45 (261)
115 1xx6_A Thymidine kinase; NESG, 92.3 0.07 2.4E-06 51.4 3.2 39 344-383 7-45 (191)
116 3b85_A Phosphate starvation-in 92.0 0.12 4E-06 50.4 4.5 36 330-365 7-42 (208)
117 2w58_A DNAI, primosome compone 91.8 0.2 6.9E-06 47.4 5.8 20 346-365 55-74 (202)
118 3vkw_A Replicase large subunit 91.6 0.071 2.4E-06 58.1 2.6 47 343-395 159-205 (446)
119 3n70_A Transport activator; si 91.4 0.17 5.9E-06 45.7 4.7 28 341-369 20-47 (145)
120 3jvv_A Twitching mobility prot 91.3 0.1 3.5E-06 55.2 3.4 25 342-366 120-144 (356)
121 2ewv_A Twitching motility prot 91.3 0.087 3E-06 56.0 2.8 25 342-366 133-157 (372)
122 3kl4_A SRP54, signal recogniti 91.2 0.16 5.4E-06 55.2 4.8 57 345-402 97-155 (433)
123 2zts_A Putative uncharacterize 91.2 0.11 3.8E-06 50.5 3.3 38 342-379 27-64 (251)
124 3co5_A Putative two-component 91.1 0.11 3.7E-06 47.0 2.9 22 340-361 22-43 (143)
125 2gza_A Type IV secretion syste 90.9 0.11 3.8E-06 54.9 3.1 30 337-366 167-196 (361)
126 2oap_1 GSPE-2, type II secreti 90.8 0.12 4.2E-06 57.3 3.6 29 337-365 252-280 (511)
127 1kgd_A CASK, peripheral plasma 90.8 0.12 4.2E-06 48.5 3.0 23 344-366 4-26 (180)
128 1p9r_A General secretion pathw 90.7 0.26 9E-06 53.2 6.0 24 344-367 166-189 (418)
129 3tr0_A Guanylate kinase, GMP k 90.7 0.11 3.8E-06 49.1 2.7 23 343-365 5-27 (205)
130 3dm5_A SRP54, signal recogniti 90.7 0.19 6.4E-06 54.8 4.8 57 345-402 100-158 (443)
131 1vma_A Cell division protein F 90.6 0.28 9.6E-06 50.7 5.9 57 344-401 103-161 (306)
132 3b9q_A Chloroplast SRP recepto 90.6 0.26 9E-06 50.7 5.6 46 342-388 97-144 (302)
133 3e70_C DPA, signal recognition 90.6 0.19 6.5E-06 52.5 4.5 57 343-400 127-185 (328)
134 2j41_A Guanylate kinase; GMP, 90.5 0.095 3.3E-06 49.6 2.0 23 342-364 3-25 (207)
135 1jbk_A CLPB protein; beta barr 90.3 0.22 7.7E-06 45.5 4.4 21 345-365 43-63 (195)
136 1znw_A Guanylate kinase, GMP k 90.3 0.11 3.8E-06 49.9 2.3 24 341-364 16-39 (207)
137 2px0_A Flagellar biosynthesis 90.2 0.19 6.6E-06 51.6 4.2 57 344-400 104-162 (296)
138 4gp7_A Metallophosphoesterase; 90.2 0.068 2.3E-06 49.9 0.7 22 343-364 7-28 (171)
139 2ehv_A Hypothetical protein PH 90.1 0.11 3.9E-06 50.5 2.3 26 341-366 26-51 (251)
140 2p65_A Hypothetical protein PF 90.0 0.22 7.5E-06 45.6 4.0 22 345-366 43-64 (187)
141 1e9r_A Conjugal transfer prote 89.8 0.16 5.3E-06 54.7 3.2 42 345-387 53-94 (437)
142 3tau_A Guanylate kinase, GMP k 89.7 0.16 5.6E-06 48.8 3.0 23 344-366 7-29 (208)
143 1zp6_A Hypothetical protein AT 89.5 0.084 2.9E-06 49.5 0.7 24 342-365 6-29 (191)
144 2dr3_A UPF0273 protein PH0284; 89.5 0.15 5.3E-06 49.4 2.6 38 342-380 20-57 (247)
145 1lvg_A Guanylate kinase, GMP k 89.4 0.16 5.4E-06 48.6 2.6 22 344-365 3-24 (198)
146 2cvh_A DNA repair and recombin 89.3 0.16 5.6E-06 48.4 2.6 27 341-367 16-42 (220)
147 2pt7_A CAG-ALFA; ATPase, prote 89.2 0.2 7E-06 52.2 3.5 25 340-364 166-190 (330)
148 1cr0_A DNA primase/helicase; R 89.2 0.18 6E-06 51.2 2.9 43 337-379 27-69 (296)
149 1njg_A DNA polymerase III subu 89.2 0.35 1.2E-05 45.8 4.9 22 346-367 46-67 (250)
150 1z6g_A Guanylate kinase; struc 89.2 0.18 6.1E-06 49.1 2.8 24 342-365 20-43 (218)
151 3a00_A Guanylate kinase, GMP k 88.9 0.2 6.7E-06 47.2 2.8 22 345-366 1-22 (186)
152 2oxc_A Probable ATP-dependent 88.8 1.4 4.8E-05 42.5 9.1 76 516-600 90-171 (230)
153 1gm5_A RECG; helicase, replica 88.7 0.53 1.8E-05 54.8 6.8 78 518-600 417-495 (780)
154 2og2_A Putative signal recogni 88.6 0.44 1.5E-05 50.4 5.5 46 342-388 154-201 (359)
155 3lw7_A Adenylate kinase relate 88.5 0.23 7.9E-06 45.0 2.9 19 347-365 3-21 (179)
156 1n0w_A DNA repair protein RAD5 88.4 0.25 8.5E-06 47.9 3.3 27 342-368 21-47 (243)
157 2qgz_A Helicase loader, putati 88.2 0.52 1.8E-05 48.5 5.7 21 345-365 152-172 (308)
158 3vaa_A Shikimate kinase, SK; s 88.1 0.29 9.8E-06 46.5 3.5 25 342-366 22-46 (199)
159 3lnc_A Guanylate kinase, GMP k 88.1 0.17 5.8E-06 49.3 1.8 24 342-365 24-47 (231)
160 2v9p_A Replication protein E1; 88.0 0.31 1E-05 50.5 3.8 38 340-381 121-158 (305)
161 1vec_A ATP-dependent RNA helic 88.0 2.5 8.6E-05 39.6 10.0 76 517-600 70-151 (206)
162 1rj9_A FTSY, signal recognitio 87.9 0.36 1.2E-05 49.8 4.3 23 344-366 101-123 (304)
163 2j9r_A Thymidine kinase; TK1, 87.9 0.28 9.6E-06 48.2 3.3 39 345-384 28-66 (214)
164 1t6n_A Probable ATP-dependent 87.8 1.8 6E-05 41.3 8.9 75 519-600 83-163 (220)
165 2chg_A Replication factor C sm 87.8 0.52 1.8E-05 44.1 5.0 20 347-366 40-59 (226)
166 1s96_A Guanylate kinase, GMP k 87.8 0.21 7.2E-06 48.9 2.3 25 341-365 12-36 (219)
167 3bos_A Putative DNA replicatio 87.7 0.54 1.8E-05 45.0 5.2 24 344-367 51-74 (242)
168 1kht_A Adenylate kinase; phosp 87.5 0.22 7.6E-06 46.2 2.2 21 345-365 3-23 (192)
169 2w0m_A SSO2452; RECA, SSPF, un 87.3 0.28 9.5E-06 46.9 2.8 26 342-367 20-45 (235)
170 3tif_A Uncharacterized ABC tra 87.1 0.17 6E-06 50.0 1.3 23 342-364 28-50 (235)
171 3ney_A 55 kDa erythrocyte memb 87.1 0.31 1.1E-05 47.2 3.0 23 344-366 18-40 (197)
172 2bjv_A PSP operon transcriptio 87.1 0.56 1.9E-05 46.4 5.0 26 343-369 27-52 (265)
173 3umf_A Adenylate kinase; rossm 87.1 0.26 9E-06 48.4 2.5 28 342-369 26-53 (217)
174 4eun_A Thermoresistant glucoki 87.0 0.25 8.7E-06 47.0 2.3 22 344-365 28-49 (200)
175 3trf_A Shikimate kinase, SK; a 86.9 0.38 1.3E-05 44.7 3.4 22 345-366 5-26 (185)
176 1kag_A SKI, shikimate kinase I 86.8 0.24 8.4E-06 45.4 2.0 21 345-365 4-24 (173)
177 2kjq_A DNAA-related protein; s 86.8 0.31 1.1E-05 44.6 2.7 22 344-365 35-56 (149)
178 4a74_A DNA repair and recombin 86.7 0.19 6.5E-06 48.2 1.2 27 341-367 21-47 (231)
179 3kb2_A SPBC2 prophage-derived 86.5 0.4 1.4E-05 43.7 3.2 20 347-366 3-22 (173)
180 1ly1_A Polynucleotide kinase; 86.4 0.26 8.9E-06 45.3 1.9 20 347-366 4-23 (181)
181 3sr0_A Adenylate kinase; phosp 86.3 0.38 1.3E-05 46.7 3.1 24 347-370 2-25 (206)
182 4ag6_A VIRB4 ATPase, type IV s 86.1 0.45 1.5E-05 50.3 3.9 41 344-385 34-74 (392)
183 1j8m_F SRP54, signal recogniti 86.0 0.67 2.3E-05 47.6 5.0 56 345-401 98-155 (297)
184 2cbz_A Multidrug resistance-as 85.9 0.22 7.6E-06 49.3 1.3 23 342-364 28-50 (237)
185 2qor_A Guanylate kinase; phosp 85.8 0.37 1.3E-05 45.9 2.8 24 342-365 9-32 (204)
186 3syl_A Protein CBBX; photosynt 85.7 0.59 2E-05 47.1 4.4 19 345-363 67-85 (309)
187 2bdt_A BH3686; alpha-beta prot 85.7 0.23 7.9E-06 46.5 1.2 21 346-366 3-23 (189)
188 1qhx_A CPT, protein (chloramph 85.7 0.31 1.1E-05 45.0 2.1 20 345-364 3-22 (178)
189 3asz_A Uridine kinase; cytidin 85.6 0.26 9.1E-06 46.9 1.6 21 344-364 5-25 (211)
190 1knq_A Gluconate kinase; ALFA/ 85.6 0.27 9.2E-06 45.4 1.6 21 345-365 8-28 (175)
191 2yhs_A FTSY, cell division pro 85.5 0.71 2.4E-05 50.9 5.2 44 343-387 291-336 (503)
192 2c95_A Adenylate kinase 1; tra 85.4 0.55 1.9E-05 43.8 3.7 25 342-366 6-30 (196)
193 3iij_A Coilin-interacting nucl 85.3 0.49 1.7E-05 43.9 3.3 23 344-366 10-32 (180)
194 3c8u_A Fructokinase; YP_612366 85.3 0.36 1.2E-05 46.3 2.4 21 343-363 20-40 (208)
195 2ffh_A Protein (FFH); SRP54, s 85.3 0.96 3.3E-05 48.9 6.0 58 344-402 97-156 (425)
196 3fe2_A Probable ATP-dependent 85.3 4.4 0.00015 39.3 10.4 74 518-600 102-181 (242)
197 2ze6_A Isopentenyl transferase 85.3 0.44 1.5E-05 47.5 3.1 20 347-366 3-22 (253)
198 2pcj_A ABC transporter, lipopr 85.2 0.23 7.9E-06 48.7 1.0 23 342-364 27-49 (224)
199 1qde_A EIF4A, translation init 85.2 2.4 8.2E-05 40.4 8.3 74 517-600 81-160 (224)
200 1htw_A HI0065; nucleotide-bind 85.2 0.53 1.8E-05 43.7 3.4 23 343-365 31-53 (158)
201 3exa_A TRNA delta(2)-isopenten 85.1 0.37 1.2E-05 50.2 2.5 22 345-366 3-24 (322)
202 3gfo_A Cobalt import ATP-bindi 85.0 0.25 8.5E-06 50.3 1.2 24 342-365 31-54 (275)
203 2r44_A Uncharacterized protein 85.0 0.48 1.6E-05 48.6 3.3 30 334-363 35-64 (331)
204 1sgw_A Putative ABC transporte 85.0 0.24 8.4E-06 48.4 1.0 23 342-364 32-54 (214)
205 1g6h_A High-affinity branched- 84.8 0.26 9.1E-06 49.3 1.2 23 342-364 30-52 (257)
206 3cm0_A Adenylate kinase; ATP-b 84.7 0.41 1.4E-05 44.5 2.4 22 345-366 4-25 (186)
207 1ji0_A ABC transporter; ATP bi 84.6 0.27 9.3E-06 48.7 1.2 23 342-364 29-51 (240)
208 2orv_A Thymidine kinase; TP4A 84.6 0.54 1.9E-05 46.7 3.3 40 344-384 18-57 (234)
209 2bwj_A Adenylate kinase 5; pho 84.5 0.69 2.4E-05 43.2 4.0 25 342-366 9-33 (199)
210 2pze_A Cystic fibrosis transme 84.5 0.28 9.5E-06 48.3 1.2 23 342-364 31-53 (229)
211 1b0u_A Histidine permease; ABC 84.5 0.28 9.6E-06 49.4 1.3 23 342-364 29-51 (262)
212 3ber_A Probable ATP-dependent 84.5 3.9 0.00013 40.1 9.7 76 516-600 109-191 (249)
213 1zuh_A Shikimate kinase; alpha 84.4 0.57 1.9E-05 42.9 3.3 20 346-365 8-27 (168)
214 2ff7_A Alpha-hemolysin translo 84.4 0.28 9.6E-06 48.9 1.2 23 342-364 32-54 (247)
215 2ghi_A Transport protein; mult 84.3 0.29 9.9E-06 49.2 1.3 24 342-365 43-66 (260)
216 3a8t_A Adenylate isopentenyltr 84.2 0.42 1.4E-05 50.2 2.5 22 345-366 40-61 (339)
217 1w4r_A Thymidine kinase; type 84.2 0.52 1.8E-05 45.6 2.9 39 344-383 19-57 (195)
218 2r6a_A DNAB helicase, replicat 84.1 0.4 1.4E-05 52.0 2.4 44 337-380 195-238 (454)
219 1mv5_A LMRA, multidrug resista 84.0 0.26 8.8E-06 49.0 0.8 23 342-364 25-47 (243)
220 4g1u_C Hemin import ATP-bindin 84.0 0.3 1E-05 49.4 1.2 23 342-364 34-56 (266)
221 3bh0_A DNAB-like replicative h 83.9 0.48 1.7E-05 48.8 2.8 44 336-380 59-102 (315)
222 1vpl_A ABC transporter, ATP-bi 83.9 0.31 1.1E-05 49.0 1.3 23 342-364 38-60 (256)
223 2d2e_A SUFC protein; ABC-ATPas 83.8 0.31 1.1E-05 48.6 1.2 24 342-365 26-49 (250)
224 2v54_A DTMP kinase, thymidylat 83.8 0.45 1.5E-05 44.8 2.3 22 344-365 3-24 (204)
225 2rhm_A Putative kinase; P-loop 83.7 0.54 1.8E-05 43.8 2.8 22 345-366 5-26 (193)
226 2zu0_C Probable ATP-dependent 83.7 0.32 1.1E-05 49.1 1.3 23 342-364 43-65 (267)
227 3uie_A Adenylyl-sulfate kinase 83.6 0.39 1.3E-05 45.6 1.8 22 343-364 23-44 (200)
228 2olj_A Amino acid ABC transpor 83.6 0.32 1.1E-05 49.1 1.3 23 342-364 47-69 (263)
229 1sxj_C Activator 1 40 kDa subu 83.6 0.85 2.9E-05 47.0 4.5 27 339-365 38-66 (340)
230 2yz2_A Putative ABC transporte 83.5 0.33 1.1E-05 49.0 1.3 23 342-364 30-52 (266)
231 1tev_A UMP-CMP kinase; ploop, 83.5 0.62 2.1E-05 43.2 3.1 20 346-365 4-23 (196)
232 1nks_A Adenylate kinase; therm 83.4 0.4 1.4E-05 44.5 1.7 19 347-365 3-21 (194)
233 1ofh_A ATP-dependent HSL prote 83.4 0.96 3.3E-05 45.3 4.7 21 345-365 50-70 (310)
234 2nq2_C Hypothetical ABC transp 83.3 0.34 1.2E-05 48.5 1.3 23 342-364 28-50 (253)
235 1fnn_A CDC6P, cell division co 83.3 1.4 4.7E-05 45.6 6.0 21 347-367 46-66 (389)
236 3fb4_A Adenylate kinase; psych 83.2 0.63 2.2E-05 44.4 3.1 22 347-368 2-23 (216)
237 2gxq_A Heat resistant RNA depe 83.2 2.2 7.4E-05 40.0 6.9 72 518-600 72-149 (207)
238 2i3b_A HCR-ntpase, human cance 83.1 0.57 1.9E-05 44.8 2.8 22 345-366 1-22 (189)
239 2ixe_A Antigen peptide transpo 83.1 0.35 1.2E-05 49.0 1.3 23 342-364 42-64 (271)
240 2z43_A DNA repair and recombin 83.1 0.8 2.7E-05 47.3 4.1 28 342-369 104-131 (324)
241 3kta_A Chromosome segregation 83.1 0.42 1.4E-05 44.3 1.8 18 347-364 28-45 (182)
242 2qmh_A HPR kinase/phosphorylas 83.0 0.53 1.8E-05 45.9 2.5 21 345-365 34-54 (205)
243 1nij_A Hypothetical protein YJ 83.0 0.57 2E-05 48.3 2.9 21 346-366 5-25 (318)
244 2qen_A Walker-type ATPase; unk 83.0 0.89 3E-05 46.2 4.4 30 339-368 25-54 (350)
245 2ihy_A ABC transporter, ATP-bi 83.0 0.35 1.2E-05 49.2 1.2 23 342-364 44-66 (279)
246 1zd8_A GTP:AMP phosphotransfer 82.9 0.65 2.2E-05 44.9 3.1 22 345-366 7-28 (227)
247 2pez_A Bifunctional 3'-phospho 82.8 0.44 1.5E-05 44.2 1.8 20 344-363 4-23 (179)
248 2qi9_C Vitamin B12 import ATP- 82.8 0.36 1.2E-05 48.3 1.2 23 342-364 23-45 (249)
249 2q6t_A DNAB replication FORK h 82.8 0.49 1.7E-05 51.2 2.4 45 336-380 191-235 (444)
250 1ojl_A Transcriptional regulat 82.7 0.88 3E-05 46.6 4.2 26 343-369 23-48 (304)
251 1ye8_A Protein THEP1, hypothet 82.7 0.59 2E-05 44.1 2.6 19 347-365 2-20 (178)
252 1ls1_A Signal recognition part 82.7 1.5 5.2E-05 44.7 5.9 56 344-400 97-154 (295)
253 3hr8_A Protein RECA; alpha and 82.6 0.56 1.9E-05 49.5 2.7 38 342-380 58-95 (356)
254 3te6_A Regulatory protein SIR3 82.6 0.97 3.3E-05 47.0 4.5 30 338-367 36-67 (318)
255 1cke_A CK, MSSA, protein (cyti 82.6 0.74 2.5E-05 44.1 3.4 21 346-366 6-26 (227)
256 3b9p_A CG5977-PA, isoform A; A 82.6 0.71 2.4E-05 46.4 3.4 23 345-367 54-76 (297)
257 3nh6_A ATP-binding cassette SU 82.6 0.34 1.1E-05 50.1 0.9 23 342-364 77-99 (306)
258 3t61_A Gluconokinase; PSI-biol 82.5 0.65 2.2E-05 43.9 2.9 20 346-365 19-38 (202)
259 2jaq_A Deoxyguanosine kinase; 82.5 0.7 2.4E-05 43.2 3.1 21 347-367 2-22 (205)
260 1qf9_A UMP/CMP kinase, protein 82.5 0.67 2.3E-05 42.9 2.9 21 346-366 7-27 (194)
261 3foz_A TRNA delta(2)-isopenten 82.5 0.64 2.2E-05 48.3 3.0 22 346-367 11-32 (316)
262 2bbw_A Adenylate kinase 4, AK4 82.4 0.76 2.6E-05 45.1 3.4 22 345-366 27-48 (246)
263 1nlf_A Regulatory protein REPA 82.3 0.61 2.1E-05 46.8 2.8 27 341-367 26-52 (279)
264 1ukz_A Uridylate kinase; trans 82.3 0.7 2.4E-05 43.6 3.0 22 346-367 16-37 (203)
265 1y63_A LMAJ004144AAA protein; 82.3 0.81 2.8E-05 42.8 3.4 22 344-365 9-30 (184)
266 3dl0_A Adenylate kinase; phosp 82.2 0.7 2.4E-05 44.1 3.0 21 347-367 2-22 (216)
267 2vp4_A Deoxynucleoside kinase; 82.2 0.47 1.6E-05 46.3 1.8 21 344-364 19-39 (230)
268 2qt1_A Nicotinamide riboside k 82.2 0.35 1.2E-05 46.1 0.8 25 340-364 16-40 (207)
269 1in4_A RUVB, holliday junction 82.2 0.66 2.2E-05 48.0 3.0 23 346-368 52-74 (334)
270 2z0h_A DTMP kinase, thymidylat 82.1 0.51 1.7E-05 44.1 1.9 19 347-365 2-20 (197)
271 1gvn_B Zeta; postsegregational 82.0 0.99 3.4E-05 45.9 4.2 23 345-367 33-55 (287)
272 4eaq_A DTMP kinase, thymidylat 81.9 0.88 3E-05 44.6 3.7 24 344-367 25-48 (229)
273 1rz3_A Hypothetical protein rb 81.9 0.71 2.4E-05 43.9 2.9 20 345-364 22-41 (201)
274 3oiy_A Reverse gyrase helicase 81.8 1.4 4.9E-05 46.3 5.5 79 516-600 62-144 (414)
275 2yvu_A Probable adenylyl-sulfa 81.7 0.51 1.8E-05 44.0 1.8 22 344-365 12-33 (186)
276 3h4m_A Proteasome-activating n 81.7 1.2 4.1E-05 44.3 4.7 24 343-366 49-72 (285)
277 2jeo_A Uridine-cytidine kinase 81.7 0.46 1.6E-05 46.8 1.5 23 342-364 22-44 (245)
278 1sxj_D Activator 1 41 kDa subu 81.7 0.88 3E-05 46.5 3.8 28 338-365 49-78 (353)
279 2f1r_A Molybdopterin-guanine d 81.4 0.51 1.7E-05 44.4 1.6 20 346-365 3-22 (171)
280 1v5w_A DMC1, meiotic recombina 81.3 0.76 2.6E-05 48.0 3.1 27 343-369 120-146 (343)
281 3bgw_A DNAB-like replicative h 81.3 0.64 2.2E-05 50.5 2.6 43 337-380 189-231 (444)
282 2xxa_A Signal recognition part 81.3 1.3 4.3E-05 48.0 4.9 57 346-402 101-159 (433)
283 2eyq_A TRCF, transcription-rep 81.2 2.1 7.3E-05 52.0 7.4 79 517-600 651-730 (1151)
284 2qby_B CDC6 homolog 3, cell di 81.2 1.2 4.3E-05 46.0 4.7 22 345-366 45-66 (384)
285 3e2i_A Thymidine kinase; Zn-bi 81.1 0.81 2.8E-05 45.0 3.0 41 343-384 26-66 (219)
286 2wwf_A Thymidilate kinase, put 81.1 0.6 2.1E-05 44.2 2.1 22 344-365 9-30 (212)
287 3bor_A Human initiation factor 81.0 4.1 0.00014 39.4 8.2 76 517-600 97-178 (237)
288 2pbr_A DTMP kinase, thymidylat 81.0 0.59 2E-05 43.4 1.9 18 347-364 2-19 (195)
289 2pl3_A Probable ATP-dependent 80.9 7.3 0.00025 37.3 9.9 73 518-600 97-176 (236)
290 3hws_A ATP-dependent CLP prote 80.9 1 3.5E-05 46.9 4.0 20 344-363 50-69 (363)
291 1zak_A Adenylate kinase; ATP:A 80.9 0.78 2.7E-05 44.1 2.8 22 346-367 6-27 (222)
292 1gtv_A TMK, thymidylate kinase 80.9 0.47 1.6E-05 45.0 1.2 19 347-365 2-20 (214)
293 3iuy_A Probable ATP-dependent 80.9 5.7 0.0002 37.9 9.1 74 517-600 93-172 (228)
294 2plr_A DTMP kinase, probable t 80.8 0.83 2.9E-05 43.0 3.0 23 345-367 4-26 (213)
295 3tqc_A Pantothenate kinase; bi 80.8 0.97 3.3E-05 47.0 3.7 18 347-364 94-111 (321)
296 2zr9_A Protein RECA, recombina 80.8 0.95 3.2E-05 47.5 3.6 37 342-379 58-94 (349)
297 1f2t_A RAD50 ABC-ATPase; DNA d 80.7 0.62 2.1E-05 42.6 1.9 17 346-362 24-40 (149)
298 1pzn_A RAD51, DNA repair and r 80.7 0.72 2.5E-05 48.4 2.7 28 342-369 128-155 (349)
299 1aky_A Adenylate kinase; ATP:A 80.7 1 3.4E-05 43.3 3.5 22 345-366 4-25 (220)
300 1e6c_A Shikimate kinase; phosp 80.6 0.91 3.1E-05 41.4 3.1 20 346-365 3-22 (173)
301 1lv7_A FTSH; alpha/beta domain 80.6 1 3.5E-05 44.3 3.6 21 345-365 45-65 (257)
302 2cdn_A Adenylate kinase; phosp 80.6 0.9 3.1E-05 42.9 3.1 21 346-366 21-41 (201)
303 2v1u_A Cell division control p 80.5 0.9 3.1E-05 46.9 3.3 23 344-366 43-65 (387)
304 1iqp_A RFCS; clamp loader, ext 80.5 1.5 5.1E-05 44.2 4.9 19 347-365 48-66 (327)
305 4a1f_A DNAB helicase, replicat 80.5 0.69 2.4E-05 48.5 2.5 44 336-380 37-80 (338)
306 4fcw_A Chaperone protein CLPB; 80.4 0.77 2.6E-05 46.2 2.7 18 346-363 48-65 (311)
307 1m7g_A Adenylylsulfate kinase; 80.4 0.7 2.4E-05 44.2 2.3 24 341-364 21-44 (211)
308 1ex7_A Guanylate kinase; subst 80.4 0.84 2.9E-05 43.6 2.8 20 347-366 3-22 (186)
309 1nn5_A Similar to deoxythymidy 80.3 0.68 2.3E-05 43.8 2.2 22 344-365 8-29 (215)
310 2bbs_A Cystic fibrosis transme 80.3 0.48 1.6E-05 48.5 1.1 23 342-364 61-83 (290)
311 1jjv_A Dephospho-COA kinase; P 80.2 0.64 2.2E-05 44.1 1.9 19 347-365 4-22 (206)
312 3nbx_X ATPase RAVA; AAA+ ATPas 80.2 1.1 3.6E-05 49.6 3.9 35 333-368 29-63 (500)
313 1q57_A DNA primase/helicase; d 80.1 0.7 2.4E-05 50.7 2.4 45 336-380 233-277 (503)
314 1e4v_A Adenylate kinase; trans 80.1 0.9 3.1E-05 43.5 2.9 21 347-367 2-22 (214)
315 4e22_A Cytidylate kinase; P-lo 80.0 0.74 2.5E-05 45.7 2.4 23 344-366 26-48 (252)
316 3d3q_A TRNA delta(2)-isopenten 79.9 0.9 3.1E-05 47.7 3.1 20 346-365 8-27 (340)
317 2if2_A Dephospho-COA kinase; a 79.9 0.63 2.2E-05 44.0 1.8 18 347-364 3-20 (204)
318 1l8q_A Chromosomal replication 79.9 0.91 3.1E-05 46.4 3.1 22 345-366 37-58 (324)
319 2onk_A Molybdate/tungstate ABC 79.8 0.51 1.8E-05 46.9 1.1 19 346-364 25-43 (240)
320 3crm_A TRNA delta(2)-isopenten 79.8 0.89 3E-05 47.4 3.0 22 346-367 6-27 (323)
321 1xjc_A MOBB protein homolog; s 79.6 0.93 3.2E-05 42.7 2.8 21 346-366 5-25 (169)
322 1ixz_A ATP-dependent metallopr 79.5 0.65 2.2E-05 45.6 1.8 21 346-366 50-70 (254)
323 3tlx_A Adenylate kinase 2; str 79.5 1 3.4E-05 44.5 3.1 23 345-367 29-51 (243)
324 1tf7_A KAIC; homohexamer, hexa 79.5 0.78 2.7E-05 50.7 2.6 27 341-367 35-61 (525)
325 2ius_A DNA translocase FTSK; n 79.3 1.1 3.8E-05 49.5 3.8 24 343-366 165-188 (512)
326 2iyv_A Shikimate kinase, SK; t 79.3 1.1 3.7E-05 41.6 3.2 20 346-365 3-22 (184)
327 2qz4_A Paraplegin; AAA+, SPG7, 79.1 1.1 3.9E-05 43.7 3.4 24 344-367 38-61 (262)
328 3fvq_A Fe(3+) IONS import ATP- 79.1 0.54 1.9E-05 49.7 1.1 23 342-364 27-49 (359)
329 1w36_B RECB, exodeoxyribonucle 79.1 1.7 5.7E-05 53.0 5.5 51 348-398 19-80 (1180)
330 3pfi_A Holliday junction ATP-d 79.1 1.4 4.7E-05 45.1 4.2 21 346-366 56-76 (338)
331 2vli_A Antibiotic resistance p 79.1 0.97 3.3E-05 41.6 2.8 21 345-365 5-25 (183)
332 2xb4_A Adenylate kinase; ATP-b 79.0 1 3.6E-05 43.5 3.1 20 347-366 2-21 (223)
333 2pt5_A Shikimate kinase, SK; a 79.0 1.1 3.8E-05 40.7 3.1 19 347-365 2-20 (168)
334 3aez_A Pantothenate kinase; tr 79.0 0.68 2.3E-05 47.9 1.8 22 342-363 87-108 (312)
335 2pjz_A Hypothetical protein ST 78.9 0.78 2.7E-05 46.2 2.1 20 345-364 30-49 (263)
336 1xti_A Probable ATP-dependent 78.8 5.7 0.00019 40.8 8.9 76 518-600 76-157 (391)
337 3qf7_A RAD50; ABC-ATPase, ATPa 78.7 0.72 2.5E-05 48.6 1.9 16 347-362 25-40 (365)
338 3lda_A DNA repair protein RAD5 78.7 1 3.5E-05 48.3 3.1 28 342-369 175-202 (400)
339 1wrb_A DJVLGB; RNA helicase, D 78.7 4.8 0.00016 39.2 7.9 73 519-600 101-179 (253)
340 1z47_A CYSA, putative ABC-tran 78.6 0.59 2E-05 49.3 1.2 23 342-364 38-60 (355)
341 1np6_A Molybdopterin-guanine d 78.6 1 3.5E-05 42.5 2.8 22 346-367 7-28 (174)
342 3pvs_A Replication-associated 78.6 0.99 3.4E-05 49.0 3.0 27 340-366 43-71 (447)
343 3uk6_A RUVB-like 2; hexameric 78.5 1.7 5.7E-05 45.0 4.6 23 346-368 71-93 (368)
344 2yyz_A Sugar ABC transporter, 78.2 0.63 2.2E-05 49.2 1.3 23 342-364 26-48 (359)
345 1vht_A Dephospho-COA kinase; s 78.2 0.8 2.7E-05 43.9 1.9 19 346-364 5-23 (218)
346 1hqc_A RUVB; extended AAA-ATPa 78.1 1.6 5.5E-05 44.1 4.3 23 345-367 38-60 (324)
347 3rlf_A Maltose/maltodextrin im 78.0 0.65 2.2E-05 49.5 1.3 24 342-365 26-49 (381)
348 3d31_A Sulfate/molybdate ABC t 78.0 0.58 2E-05 49.3 0.9 23 342-364 23-45 (348)
349 2it1_A 362AA long hypothetical 78.0 0.65 2.2E-05 49.2 1.3 23 342-364 26-48 (362)
350 1d2n_A N-ethylmaleimide-sensit 77.9 1.2 4E-05 44.3 3.1 22 346-367 65-86 (272)
351 3a4m_A L-seryl-tRNA(SEC) kinas 77.7 0.83 2.8E-05 45.5 1.9 19 346-364 5-23 (260)
352 2j37_W Signal recognition part 77.7 2.1 7.1E-05 47.3 5.3 55 346-401 102-158 (504)
353 3eph_A TRNA isopentenyltransfe 77.6 1.1 3.8E-05 48.1 2.9 21 346-366 3-23 (409)
354 2qby_A CDC6 homolog 1, cell di 77.6 1.3 4.4E-05 45.6 3.4 23 345-367 45-67 (386)
355 1ak2_A Adenylate kinase isoenz 77.5 1.2 4.3E-05 43.2 3.1 23 345-367 16-38 (233)
356 1u94_A RECA protein, recombina 77.3 1.4 5E-05 46.3 3.8 38 342-380 60-97 (356)
357 1g29_1 MALK, maltose transport 77.3 0.69 2.4E-05 49.1 1.2 23 342-364 26-48 (372)
358 1via_A Shikimate kinase; struc 77.2 1.3 4.5E-05 40.7 3.1 19 347-365 6-24 (175)
359 2d7d_A Uvrabc system protein B 77.2 3.9 0.00013 46.6 7.5 59 338-400 24-83 (661)
360 3cf0_A Transitional endoplasmi 77.2 1.3 4.6E-05 44.9 3.4 24 343-366 47-70 (301)
361 1v43_A Sugar-binding transport 77.1 0.71 2.4E-05 49.0 1.3 23 342-364 34-56 (372)
362 3be4_A Adenylate kinase; malar 77.1 1.2 4.3E-05 42.7 2.9 21 346-366 6-26 (217)
363 1uf9_A TT1252 protein; P-loop, 76.8 0.88 3E-05 42.6 1.7 19 346-364 9-27 (203)
364 3k1j_A LON protease, ATP-depen 76.8 2.3 7.9E-05 47.8 5.5 30 336-365 51-80 (604)
365 1a5t_A Delta prime, HOLB; zinc 76.6 1.6 5.6E-05 45.0 3.9 36 331-366 3-45 (334)
366 1jr3_A DNA polymerase III subu 76.5 2.1 7.3E-05 44.0 4.7 22 346-367 39-60 (373)
367 1iy2_A ATP-dependent metallopr 76.4 0.9 3.1E-05 45.4 1.8 20 347-366 75-94 (278)
368 4tmk_A Protein (thymidylate ki 76.4 1.5 5.1E-05 42.7 3.3 21 344-364 2-22 (213)
369 2v3c_C SRP54, signal recogniti 76.3 0.81 2.8E-05 49.5 1.5 55 346-401 100-156 (432)
370 1zu4_A FTSY; GTPase, signal re 76.3 2.5 8.6E-05 43.7 5.2 44 343-387 103-148 (320)
371 1sxj_A Activator 1 95 kDa subu 76.1 2.4 8.3E-05 46.6 5.3 25 345-369 77-101 (516)
372 1oxx_K GLCV, glucose, ABC tran 76.1 0.59 2E-05 49.2 0.3 23 342-364 28-50 (353)
373 3ly5_A ATP-dependent RNA helic 76.0 7.7 0.00026 38.3 8.5 74 518-600 126-206 (262)
374 1tq4_A IIGP1, interferon-induc 75.8 1.6 5.4E-05 47.0 3.6 32 334-365 58-89 (413)
375 3nwj_A ATSK2; P loop, shikimat 75.8 1.3 4.5E-05 44.2 2.8 23 344-366 47-69 (250)
376 2i4i_A ATP-dependent RNA helic 75.6 13 0.00044 38.5 10.6 73 519-600 102-180 (417)
377 2i1q_A DNA repair and recombin 75.6 1.5 5.2E-05 44.8 3.3 27 343-369 96-122 (322)
378 1sq5_A Pantothenate kinase; P- 75.3 0.95 3.2E-05 46.4 1.6 23 343-365 78-100 (308)
379 3auy_A DNA double-strand break 75.1 0.95 3.2E-05 47.6 1.6 17 346-362 26-42 (371)
380 3tui_C Methionine import ATP-b 74.9 0.89 3E-05 48.2 1.3 23 342-364 51-73 (366)
381 3gd7_A Fusion complex of cysti 74.8 1 3.5E-05 48.1 1.8 24 342-365 44-67 (390)
382 1sxj_B Activator 1 37 kDa subu 74.8 2.8 9.7E-05 41.9 5.0 19 347-365 44-62 (323)
383 4ddu_A Reverse gyrase; topoiso 74.8 2.7 9.2E-05 50.9 5.6 78 516-600 119-201 (1104)
384 3sop_A Neuronal-specific septi 74.6 1.1 3.7E-05 45.3 1.8 18 347-364 4-21 (270)
385 2x8a_A Nuclear valosin-contain 74.6 1.1 3.6E-05 45.3 1.8 22 346-367 45-66 (274)
386 3d8b_A Fidgetin-like protein 1 74.6 2.6 8.7E-05 44.0 4.8 25 344-368 116-140 (357)
387 2db3_A ATP-dependent RNA helic 74.5 11 0.00038 40.0 9.9 74 518-600 129-208 (434)
388 3qks_A DNA double-strand break 74.5 1.2 4E-05 42.8 1.9 18 346-363 24-41 (203)
389 2iut_A DNA translocase FTSK; n 74.5 1.9 6.5E-05 48.3 3.9 24 344-367 213-236 (574)
390 3pxg_A Negative regulator of g 74.4 1.6 5.5E-05 47.5 3.2 20 344-363 200-219 (468)
391 1g8p_A Magnesium-chelatase 38 74.2 1.6 5.5E-05 44.6 3.0 18 346-363 46-63 (350)
392 1s2m_A Putative ATP-dependent 74.2 12 0.00041 38.5 9.9 75 517-600 88-168 (400)
393 1hv8_A Putative ATP-dependent 74.1 17 0.00059 36.5 10.9 82 509-600 65-152 (367)
394 2zpa_A Uncharacterized protein 74.0 1.9 6.5E-05 49.2 3.8 57 332-392 177-235 (671)
395 4edh_A DTMP kinase, thymidylat 74.0 1.2 4E-05 43.4 1.8 21 344-364 5-25 (213)
396 1q0u_A Bstdead; DEAD protein, 74.0 5.6 0.00019 37.8 6.7 78 518-600 72-155 (219)
397 1xp8_A RECA protein, recombina 73.9 1.9 6.5E-05 45.5 3.6 38 342-380 71-108 (366)
398 2chq_A Replication factor C sm 73.9 1.8 6.2E-05 43.3 3.3 19 347-365 40-58 (319)
399 1pui_A ENGB, probable GTP-bind 73.7 1.1 3.8E-05 42.0 1.6 19 344-362 25-43 (210)
400 3hjn_A DTMP kinase, thymidylat 73.5 2.1 7E-05 41.0 3.4 17 348-364 3-19 (197)
401 2p5t_B PEZT; postsegregational 73.5 1.4 4.7E-05 43.6 2.2 22 345-366 32-53 (253)
402 1fuu_A Yeast initiation factor 73.5 8.9 0.0003 39.3 8.6 74 517-600 88-167 (394)
403 3t15_A Ribulose bisphosphate c 73.4 1.8 6E-05 44.0 3.1 21 346-366 37-57 (293)
404 1odf_A YGR205W, hypothetical 3 73.3 1.5 5.1E-05 44.8 2.5 18 345-362 31-48 (290)
405 2r2a_A Uncharacterized protein 73.3 1.8 6.2E-05 41.6 3.0 22 347-368 7-28 (199)
406 1ltq_A Polynucleotide kinase; 73.2 1.3 4.3E-05 44.6 1.9 19 347-365 4-22 (301)
407 3eie_A Vacuolar protein sortin 73.2 2 6.8E-05 44.0 3.4 24 345-368 51-74 (322)
408 1tue_A Replication protein E1; 73.2 1.7 5.9E-05 42.5 2.8 20 346-365 59-78 (212)
409 1xwi_A SKD1 protein; VPS4B, AA 72.9 1.9 6.6E-05 44.3 3.2 24 345-368 45-68 (322)
410 3io5_A Recombination and repai 72.8 2 6.9E-05 44.8 3.3 35 347-381 30-65 (333)
411 1um8_A ATP-dependent CLP prote 72.8 1.4 4.7E-05 46.1 2.1 19 345-363 72-90 (376)
412 4a82_A Cystic fibrosis transme 72.7 1.1 3.6E-05 50.3 1.3 22 342-363 364-385 (578)
413 3v9p_A DTMP kinase, thymidylat 72.4 1.4 4.7E-05 43.5 1.9 22 343-364 23-44 (227)
414 3vfd_A Spastin; ATPase, microt 72.0 3 0.0001 43.8 4.6 23 345-367 148-170 (389)
415 3qkt_A DNA double-strand break 71.8 1.3 4.6E-05 45.9 1.8 18 346-363 24-41 (339)
416 1yrb_A ATP(GTP)binding protein 71.8 2.7 9.2E-05 41.1 3.9 24 346-369 15-38 (262)
417 2grj_A Dephospho-COA kinase; T 71.7 1.1 3.8E-05 42.8 1.0 21 345-365 12-32 (192)
418 3tmk_A Thymidylate kinase; pho 71.7 1.6 5.5E-05 42.6 2.2 23 344-366 4-26 (216)
419 3qf4_B Uncharacterized ABC tra 71.4 1.2 4E-05 50.2 1.3 23 342-364 378-400 (598)
420 1wp9_A ATP-dependent RNA helic 71.3 8.9 0.0003 40.0 8.1 75 516-600 50-130 (494)
421 2z4s_A Chromosomal replication 71.2 3.8 0.00013 44.1 5.3 21 345-365 130-150 (440)
422 3ake_A Cytidylate kinase; CMP 71.0 2.4 8.1E-05 39.7 3.2 19 347-365 4-22 (208)
423 2dyk_A GTP-binding protein; GT 71.0 2 6.7E-05 38.1 2.5 20 347-366 3-22 (161)
424 3b60_A Lipid A export ATP-bind 70.9 1.2 4E-05 50.0 1.1 23 342-364 366-388 (582)
425 3dkp_A Probable ATP-dependent 70.9 6.4 0.00022 38.0 6.4 74 519-600 99-180 (245)
426 1p5z_B DCK, deoxycytidine kina 70.9 1.6 5.4E-05 43.3 1.9 20 344-363 23-42 (263)
427 2wsm_A Hydrogenase expression/ 70.7 2.1 7.2E-05 40.6 2.8 25 345-369 30-54 (221)
428 2npi_A Protein CLP1; CLP1-PCF1 70.6 1.2 4.2E-05 48.5 1.2 24 341-364 134-157 (460)
429 2fna_A Conserved hypothetical 70.6 2.3 7.9E-05 43.0 3.2 24 346-369 31-54 (357)
430 2ce2_X GTPase HRAS; signaling 70.6 1.9 6.5E-05 38.0 2.3 21 347-367 5-25 (166)
431 3lv8_A DTMP kinase, thymidylat 70.6 2.1 7.3E-05 42.3 2.8 22 344-365 26-47 (236)
432 3fmo_B ATP-dependent RNA helic 70.5 5.9 0.0002 40.1 6.3 71 519-600 163-240 (300)
433 1svm_A Large T antigen; AAA+ f 70.5 1.8 6E-05 46.0 2.3 25 342-366 166-190 (377)
434 3b5x_A Lipid A export ATP-bind 70.4 1.6 5.6E-05 48.8 2.2 24 342-365 366-389 (582)
435 1lkx_A Myosin IE heavy chain; 70.3 2.6 8.9E-05 48.4 3.8 27 343-369 92-121 (697)
436 2vhj_A Ntpase P4, P4; non- hyd 70.1 2.1 7.1E-05 44.7 2.7 27 342-368 120-146 (331)
437 2z0m_A 337AA long hypothetical 70.1 9 0.00031 38.2 7.5 73 518-600 56-134 (337)
438 1sxj_E Activator 1 40 kDa subu 70.1 1.6 5.3E-05 44.9 1.8 19 348-366 39-57 (354)
439 3qf4_A ABC transporter, ATP-bi 70.0 1.3 4.6E-05 49.6 1.3 22 342-363 366-387 (587)
440 2qp9_X Vacuolar protein sortin 70.0 2.4 8.1E-05 44.3 3.2 24 345-368 84-107 (355)
441 2c9o_A RUVB-like 1; hexameric 70.0 3.7 0.00012 44.4 4.8 23 346-368 64-86 (456)
442 2ged_A SR-beta, signal recogni 70.0 2.1 7.1E-05 39.5 2.5 22 346-367 49-70 (193)
443 1tf7_A KAIC; homohexamer, hexa 69.9 2 6.7E-05 47.4 2.7 28 341-368 277-304 (525)
444 2r62_A Cell division protease 69.8 1.4 4.8E-05 43.4 1.3 21 346-366 45-65 (268)
445 3r20_A Cytidylate kinase; stru 69.8 2.5 8.5E-05 41.8 3.1 22 345-366 9-30 (233)
446 2f9l_A RAB11B, member RAS onco 69.7 2.1 7.2E-05 40.0 2.5 20 347-366 7-26 (199)
447 1z2a_A RAS-related protein RAB 69.6 2.2 7.5E-05 37.9 2.5 21 347-367 7-27 (168)
448 2yl4_A ATP-binding cassette SU 69.4 1.3 4.3E-05 49.8 1.0 23 342-364 367-389 (595)
449 2v1x_A ATP-dependent DNA helic 69.3 6.5 0.00022 44.0 6.8 59 518-585 84-144 (591)
450 4hlc_A DTMP kinase, thymidylat 69.1 1.7 5.8E-05 41.9 1.7 19 346-364 3-21 (205)
451 2ocp_A DGK, deoxyguanosine kin 69.0 1.7 5.7E-05 42.5 1.6 20 346-365 3-22 (241)
452 2f6r_A COA synthase, bifunctio 68.9 1.7 5.8E-05 43.9 1.7 20 346-365 76-95 (281)
453 3nwn_A Kinesin-like protein KI 68.9 2.7 9.1E-05 44.4 3.3 25 338-362 96-122 (359)
454 1e69_A Chromosome segregation 68.9 1.8 6E-05 44.6 1.9 18 347-364 26-43 (322)
455 1q3t_A Cytidylate kinase; nucl 68.8 3.1 0.0001 40.4 3.5 23 344-366 15-37 (236)
456 1bg2_A Kinesin; motor protein, 68.8 2.9 9.9E-05 43.5 3.5 25 338-362 69-95 (325)
457 2yv5_A YJEQ protein; hydrolase 68.7 2.5 8.4E-05 43.2 2.9 24 343-366 163-186 (302)
458 1w5s_A Origin recognition comp 68.7 2.7 9.3E-05 43.8 3.3 23 345-367 50-74 (412)
459 1ky3_A GTP-binding protein YPT 68.3 2.4 8.2E-05 38.2 2.5 21 347-367 10-30 (182)
460 1uj2_A Uridine-cytidine kinase 67.9 2.9 9.9E-05 41.1 3.2 17 347-363 24-40 (252)
461 1oix_A RAS-related protein RAB 67.9 2.3 7.8E-05 39.7 2.3 20 347-366 31-50 (191)
462 1ek0_A Protein (GTP-binding pr 67.8 2.5 8.6E-05 37.5 2.5 21 347-367 5-25 (170)
463 2v26_A Myosin VI; calmodulin-b 67.7 3.2 0.00011 48.3 3.9 26 343-368 138-166 (784)
464 1kao_A RAP2A; GTP-binding prot 67.7 2.5 8.7E-05 37.3 2.5 21 347-367 5-25 (167)
465 1u8z_A RAS-related protein RAL 67.7 2.5 8.7E-05 37.3 2.5 21 347-367 6-26 (168)
466 1yqt_A RNAse L inhibitor; ATP- 67.7 1.6 5.6E-05 48.5 1.4 23 342-364 44-66 (538)
467 2zan_A Vacuolar protein sortin 67.7 4.7 0.00016 43.4 5.0 23 345-367 167-189 (444)
468 4aby_A DNA repair protein RECN 67.7 0.85 2.9E-05 48.3 -0.9 19 344-363 60-78 (415)
469 3u61_B DNA polymerase accessor 67.7 4.9 0.00017 40.7 4.9 22 346-367 49-70 (324)
470 4akg_A Glutathione S-transfera 67.5 2.5 8.4E-05 55.6 3.2 40 324-363 899-941 (2695)
471 1ry6_A Internal kinesin; kines 67.5 2.8 9.4E-05 44.3 3.0 23 340-362 78-102 (360)
472 3pqc_A Probable GTP-binding pr 67.2 2.4 8.3E-05 38.8 2.3 20 347-366 25-44 (195)
473 2hf9_A Probable hydrogenase ni 67.0 2.8 9.6E-05 39.8 2.8 24 346-369 39-62 (226)
474 3pxi_A Negative regulator of g 67.0 2.8 9.5E-05 48.3 3.2 19 344-362 200-218 (758)
475 2wji_A Ferrous iron transport 67.0 2.6 9E-05 38.0 2.5 20 347-366 5-24 (165)
476 4b4t_M 26S protease regulatory 66.9 3 0.0001 45.2 3.2 25 345-369 215-239 (434)
477 3hjh_A Transcription-repair-co 66.9 7.2 0.00025 42.7 6.4 53 344-400 13-65 (483)
478 1g16_A RAS-related protein SEC 66.9 2.5 8.6E-05 37.6 2.3 20 347-366 5-24 (170)
479 4a2q_A RIG-I, retinoic acid in 66.9 11 0.00037 43.7 8.2 59 518-585 296-354 (797)
480 1svi_A GTP-binding protein YSX 66.9 2.5 8.5E-05 38.9 2.3 21 346-366 24-44 (195)
481 3m6a_A ATP-dependent protease 66.9 2.3 7.7E-05 47.3 2.3 20 344-363 107-126 (543)
482 1nrj_B SR-beta, signal recogni 66.8 2.6 8.8E-05 39.8 2.5 22 346-367 13-34 (218)
483 1a7j_A Phosphoribulokinase; tr 66.8 2 6.8E-05 43.7 1.7 20 345-364 5-24 (290)
484 2erx_A GTP-binding protein DI- 66.8 2.7 9.2E-05 37.4 2.5 20 347-366 5-24 (172)
485 1lw7_A Transcriptional regulat 66.7 2.4 8E-05 44.4 2.3 28 338-365 161-190 (365)
486 2y65_A Kinesin, kinesin heavy 66.7 3.3 0.00011 43.8 3.5 25 338-362 76-102 (365)
487 1z0j_A RAB-22, RAS-related pro 66.6 2.7 9.3E-05 37.4 2.5 21 347-367 8-28 (170)
488 2vvg_A Kinesin-2; motor protei 66.6 3.4 0.00012 43.5 3.5 25 338-362 81-107 (350)
489 4db1_A Myosin-7; S1DC, cardiac 66.4 3.9 0.00013 47.5 4.2 27 343-369 169-198 (783)
490 1w1w_A Structural maintenance 66.2 2.4 8.1E-05 45.4 2.3 21 344-364 25-45 (430)
491 3dc4_A Kinesin-like protein NO 66.2 3.2 0.00011 43.5 3.2 22 341-362 90-112 (344)
492 1x88_A Kinesin-like protein KI 66.1 3.5 0.00012 43.5 3.5 25 338-362 80-106 (359)
493 3eiq_A Eukaryotic initiation f 66.1 25 0.00087 36.1 10.2 76 517-600 107-188 (414)
494 2h58_A Kinesin-like protein KI 66.0 3.5 0.00012 42.9 3.5 25 338-362 72-98 (330)
495 1v8k_A Kinesin-like protein KI 66.0 3.5 0.00012 44.3 3.5 25 338-362 146-172 (410)
496 1w7j_A Myosin VA; motor protei 65.9 3.8 0.00013 47.8 4.0 27 343-369 154-183 (795)
497 2zfi_A Kinesin-like protein KI 65.8 3.5 0.00012 43.5 3.5 25 338-362 81-107 (366)
498 1goj_A Kinesin, kinesin heavy 65.7 3.3 0.00011 43.6 3.2 25 338-362 72-98 (355)
499 2rcn_A Probable GTPase ENGC; Y 65.7 3.9 0.00013 43.1 3.8 22 343-364 213-234 (358)
500 1t5c_A CENP-E protein, centrom 65.6 3.4 0.00012 43.4 3.3 25 338-362 69-95 (349)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=4.3e-50 Score=468.73 Aligned_cols=316 Identities=55% Similarity=0.851 Sum_probs=287.9
Q ss_pred HHHHHHHHHccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhcccc--CCeeeecchhHHHHHHHHHHHH
Q 035699 318 ALEMLQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTK--QGKIGCTQLRRVAAMSVAARVS 395 (633)
Q Consensus 318 ~~~~l~~~r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~--~gkilitqPrR~aA~qva~rva 395 (633)
.+..+.+.|..+|++.++..|+.++.++++++|+|||||||||++|++++...+.. +++++|++|||++|.+++.+++
T Consensus 82 ~~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~ 161 (773)
T 2xau_A 82 KYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVA 161 (773)
T ss_dssp HHHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHH
Confidence 34555666789999999999999999999999999999999999999988766554 3479999999999999999999
Q ss_pred HHhCCcccceEeeeeecccccCCCCcEEEeCchHHHHHHhcCCCCCCceeee-eecc------------------cCCCc
Q 035699 396 QEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREIVLEPSLESYSVLI-DLIN------------------YRPDL 456 (633)
Q Consensus 396 ~e~g~~vg~~VGy~ir~e~~~s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-di~~------------------~rpdl 456 (633)
..+|..+|..+||.+++++.....++|+|+|||+|++++..++.+.++++|| |.++ .++++
T Consensus 162 ~~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~ 241 (773)
T 2xau_A 162 EEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDL 241 (773)
T ss_dssp HHTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTC
T ss_pred HHhCCchhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCc
Confidence 9999999999999999998888899999999999999999999999999999 4443 35788
Q ss_pred cEEEeecccCHHhHhhhhCCCCEEEeCCeeeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHH
Q 035699 457 KLLISSATLDAENFSDYFGSAPIFKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEE 536 (633)
Q Consensus 457 klil~SAT~~~~~~s~~f~~~pii~i~gr~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~ 536 (633)
++|+||||++.+.|..||+++|++.++|+.+||+++|.+.+..+|+...+..+++++...++|++||||||+.+|+.+++
T Consensus 242 ~iIl~SAT~~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~ 321 (773)
T 2xau_A 242 KIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVR 321 (773)
T ss_dssp EEEEEESCSCCHHHHHHTTSCCEEECCCCCCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHH
T ss_pred eEEEEeccccHHHHHHHhcCCCcccccCcccceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999889999999888788999999999999999999
Q ss_pred HHHHhhccc--CCCCCceEEEeccCCCCHHHHHHHhCCCC-----CCCeeEEEeCCccccCCCCCCccEEEeCCCCcccc
Q 035699 537 ILKQRTRGL--GTKIAELIICPIYGNLPTELQAKIFEPTP-----EGARKVVLATNIAETSLTIDGIKYVIDPGFAKVKS 609 (633)
Q Consensus 537 ~L~~~~~~l--~~~~~~~~v~~lHg~l~~~~R~~i~~~f~-----~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~~ 609 (633)
.|...+..+ .....++.+.++||+|++.+|..+++.|+ .|.++|||||||||+|||||+|++|||+|+++.+.
T Consensus 322 ~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~ 401 (773)
T 2xau_A 322 KISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKV 401 (773)
T ss_dssp HHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEE
T ss_pred HHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCcccee
Confidence 998643222 11224789999999999999999999999 99999999999999999999999999999999999
Q ss_pred ccCCCCceeeeeeeccHHHHhhcC
Q 035699 610 YNPKTGMESLLVNPISKASANQRT 633 (633)
Q Consensus 610 yd~~~g~~~l~~~~iSka~a~QR~ 633 (633)
|||++|++.|.++|+|++++.||+
T Consensus 402 yd~~~g~~~L~~~p~S~~s~~QR~ 425 (773)
T 2xau_A 402 YNPRIRVESLLVSPISKASAQQRA 425 (773)
T ss_dssp EETTTTEEEEEEEECCHHHHHHHH
T ss_pred eccccCccccccccCCHHHHHhhc
Confidence 999999999999999999999984
No 2
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.2e-37 Score=361.01 Aligned_cols=293 Identities=18% Similarity=0.125 Sum_probs=222.3
Q ss_pred CChHHHHHHHHH-HHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHH--HHhCCcccceE
Q 035699 330 PIYPFREELLQA-VSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVS--QEMGVKLGHEV 406 (633)
Q Consensus 330 Pi~~~q~~il~a-l~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva--~e~g~~vg~~V 406 (633)
..+++|.++++. +.++++++|+||||||||+++++++++.....+++++|++|+|+||.+++.++. ..+|..+|..+
T Consensus 30 ~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~ 109 (715)
T 2va8_A 30 KLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTS 109 (715)
T ss_dssp BCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECC
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 678999999998 888999999999999999999999987755456699999999999999999883 23577777777
Q ss_pred eeeeecccccCCCCcEEEeCchHHHHHHhcCCC-CCCceeee-eecccC----------------CCccEEEeeccc-CH
Q 035699 407 GYSIRFEDCTSDKTVLKYMTDGMLLREIVLEPS-LESYSVLI-DLINYR----------------PDLKLLISSATL-DA 467 (633)
Q Consensus 407 Gy~ir~e~~~s~~t~Iiv~TpGrLL~~l~~~~~-L~~~s~vI-di~~~r----------------pdlklil~SAT~-~~ 467 (633)
|+..+.+... ..++|+|||||+|++++..++. +.++++|| |.+|.. +++++|+||||+ |+
T Consensus 110 G~~~~~~~~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~~~~ii~lSATl~n~ 188 (715)
T 2va8_A 110 GDYDTDDAWL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAKRRNLLALSATISNY 188 (715)
T ss_dssp SCSSSCCGGG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHHTSEEEEEESCCTTH
T ss_pred CCCCCchhhc-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHHHHHHHhcccCcEEEEcCCCCCH
Confidence 7766655443 3789999999999999998885 99999999 655532 357999999999 58
Q ss_pred HhHhhhhCCCCEEEeCCeeeeEEEEEEcCC--------------chhH--HHHHHHHHHHHHhcCCCCCEEEEcCcHHHH
Q 035699 468 ENFSDYFGSAPIFKIPRRRYHVELFYTKAP--------------EADY--IEAAIVTALQIHVNEPIGDILVFLTGQDQF 531 (633)
Q Consensus 468 ~~~s~~f~~~pii~i~gr~~pv~~~y~~~~--------------~~~y--l~~~v~~l~~i~~~~~~g~iLVFl~t~~ei 531 (633)
+.|+.||+ ++++..+++.+|+..++...+ ...+ ....+..+..++. +.+++||||||+.++
T Consensus 189 ~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~ 265 (715)
T 2va8_A 189 KQIAKWLG-AEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMA 265 (715)
T ss_dssp HHHHHHHT-CEEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHHT--TTCCEEEECSSHHHH
T ss_pred HHHHHHhC-CCccCCCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHHh--cCCCEEEEECCHHHH
Confidence 99999995 777888888888775543211 0000 1223444444443 468999999999999
Q ss_pred HHHHHHHHHhhcc--cCC-----------CC--------------CceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeC
Q 035699 532 ETAEEILKQRTRG--LGT-----------KI--------------AELIICPIYGNLPTELQAKIFEPTPEGARKVVLAT 584 (633)
Q Consensus 532 e~l~~~L~~~~~~--l~~-----------~~--------------~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvAT 584 (633)
+.++..|...... +.. .. ....+.++||+|++.+|..+++.|+.|.++|||||
T Consensus 266 ~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT 345 (715)
T 2va8_A 266 ESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVAT 345 (715)
T ss_dssp HHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEEC
T ss_pred HHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEC
Confidence 9999999875321 000 00 01248899999999999999999999999999999
Q ss_pred CccccCCCCCCccEEEeCCCCccccccCCCCceeeeeeeccHHHHhhcC
Q 035699 585 NIAETSLTIDGIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQRT 633 (633)
Q Consensus 585 dIAerGLdIp~V~~VID~G~~k~~~yd~~~g~~~l~~~~iSka~a~QR~ 633 (633)
|++++|||||++++|||+ ...||+++|+. ..|+|.+++.||+
T Consensus 346 ~~l~~Gidip~~~~VI~~----~~~~d~~~~~~---~~~~s~~~~~Qr~ 387 (715)
T 2va8_A 346 PTLAAGVNLPARTVIIGD----IYRFNKKIAGY---YDEIPIMEYKQMS 387 (715)
T ss_dssp GGGGGSSCCCBSEEEECC----C-----------------CHHHHHHHH
T ss_pred hHHhcccCCCceEEEEeC----CeeccccCCCC---CCcCCHHHHHHHh
Confidence 999999999999999997 45699888775 7899999999984
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.7e-36 Score=350.81 Aligned_cols=288 Identities=16% Similarity=0.127 Sum_probs=228.0
Q ss_pred CChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHH--HhCCcccceEe
Q 035699 330 PIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQ--EMGVKLGHEVG 407 (633)
Q Consensus 330 Pi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~--e~g~~vg~~VG 407 (633)
..+++|.++++++.++++++++||||||||+++++++++.. ..+++++|++|+|+||.+++.++.. .+|..++..+|
T Consensus 25 ~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~-~~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G 103 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREA-IKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTG 103 (702)
T ss_dssp CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHH-HTTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECS
T ss_pred CCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHH-HhCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 66889999999999999999999999999999999998763 3456999999999999999998832 34666666667
Q ss_pred eeeecccccCCCCcEEEeCchHHHHHHhcCCC-CCCceeee-eeccc--------------------CCCccEEEeeccc
Q 035699 408 YSIRFEDCTSDKTVLKYMTDGMLLREIVLEPS-LESYSVLI-DLINY--------------------RPDLKLLISSATL 465 (633)
Q Consensus 408 y~ir~e~~~s~~t~Iiv~TpGrLL~~l~~~~~-L~~~s~vI-di~~~--------------------rpdlklil~SAT~ 465 (633)
+....+... ..++|+|||||+|.+++..++. +.++++|| |.+|. ++++++|+||||+
T Consensus 104 ~~~~~~~~~-~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl 182 (702)
T 2p6r_A 104 DYESRDEHL-GDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATA 182 (702)
T ss_dssp SCBCCSSCS-TTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCC
T ss_pred CCCcchhhc-cCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCc
Confidence 655554433 3789999999999999988875 89999999 55543 3678999999999
Q ss_pred -CHHhHhhhhCCCCEEEeCCeeeeEEEEEEcCCchhHHHH---------HHHHHHHHHhcCCCCCEEEEcCcHHHHHHHH
Q 035699 466 -DAENFSDYFGSAPIFKIPRRRYHVELFYTKAPEADYIEA---------AIVTALQIHVNEPIGDILVFLTGQDQFETAE 535 (633)
Q Consensus 466 -~~~~~s~~f~~~pii~i~gr~~pv~~~y~~~~~~~yl~~---------~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~ 535 (633)
|.+.++.|++ ++++..+++.+|+..++...+...+... ....+...+. +.+++||||||+.+++.++
T Consensus 183 ~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a 259 (702)
T 2p6r_A 183 PNVTEIAEWLD-ADYYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVA--ENGGVLVFESTRRGAEKTA 259 (702)
T ss_dssp TTHHHHHHHTT-CEEEECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHH
T ss_pred CCHHHHHHHhC-CCcccCCCCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHH
Confidence 5899999985 7788889999998876654332111110 2233333332 4689999999999999999
Q ss_pred HHHHHhhcccCCCC---------------------CceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCC
Q 035699 536 EILKQRTRGLGTKI---------------------AELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTID 594 (633)
Q Consensus 536 ~~L~~~~~~l~~~~---------------------~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp 594 (633)
..|...+..+-... ....+.++||+|++.+|..+++.|+.|.++|||||+++++|||||
T Consensus 260 ~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip 339 (702)
T 2p6r_A 260 VKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLP 339 (702)
T ss_dssp HHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCC
T ss_pred HHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCC
Confidence 99987532110000 013478899999999999999999999999999999999999999
Q ss_pred CccEEEeCCCCccccccCCCCceeeeeeeccHHHHhhcC
Q 035699 595 GIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQRT 633 (633)
Q Consensus 595 ~V~~VID~G~~k~~~yd~~~g~~~l~~~~iSka~a~QR~ 633 (633)
++++||++ ...|| |. ..|+|.++..||+
T Consensus 340 ~~~~VI~~----~~~yd---~~----~~~~s~~~~~Qr~ 367 (702)
T 2p6r_A 340 ARRVIVRS----LYRFD---GY----SKRIKVSEYKQMA 367 (702)
T ss_dssp BSEEEECC----SEEES---SS----EEECCHHHHHHHH
T ss_pred ceEEEEcC----ceeeC---CC----CCcCCHHHHHHHh
Confidence 99999997 45687 33 6789999999984
No 4
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.1e-34 Score=336.72 Aligned_cols=294 Identities=17% Similarity=0.128 Sum_probs=223.8
Q ss_pred HccCCChHHHHHHHHH-HHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHH--HhCCcc
Q 035699 326 RKTLPIYPFREELLQA-VSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQ--EMGVKL 402 (633)
Q Consensus 326 r~~LPi~~~q~~il~a-l~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~--e~g~~v 402 (633)
+.--..+++|.+++++ +.++++++|+||||||||+++++++++.....+++++|++|+|+||.+++.++.. .+|..+
T Consensus 19 ~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v 98 (720)
T 2zj8_A 19 RGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKIGLRV 98 (720)
T ss_dssp TTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGGGGGGTCCE
T ss_pred CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHHHHhcCCEE
Confidence 3444789999999998 8999999999999999999999998877554567999999999999999999852 245555
Q ss_pred cceEeeeeecccccCCCCcEEEeCchHHHHHHhcCCC-CCCceeee-eeccc-----------------CCCccEEEeec
Q 035699 403 GHEVGYSIRFEDCTSDKTVLKYMTDGMLLREIVLEPS-LESYSVLI-DLINY-----------------RPDLKLLISSA 463 (633)
Q Consensus 403 g~~VGy~ir~e~~~s~~t~Iiv~TpGrLL~~l~~~~~-L~~~s~vI-di~~~-----------------rpdlklil~SA 463 (633)
+..+| .+....+....++|+|||||+|..++...+. +.++++|| |.+|. ++++++|+|||
T Consensus 99 ~~~~G-~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~ii~lSA 177 (720)
T 2zj8_A 99 AMATG-DYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQIIGLSA 177 (720)
T ss_dssp EEECS-CSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBTTBEEEEEEC
T ss_pred EEecC-CCCccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhcCCeEEEEcC
Confidence 54444 2222233334789999999999999988774 89999998 66652 13688999999
Q ss_pred cc-CHHhHhhhhCCCCEEEeCCeeeeEEEEEEcCCchhH-------HHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHH
Q 035699 464 TL-DAENFSDYFGSAPIFKIPRRRYHVELFYTKAPEADY-------IEAAIVTALQIHVNEPIGDILVFLTGQDQFETAE 535 (633)
Q Consensus 464 T~-~~~~~s~~f~~~pii~i~gr~~pv~~~y~~~~~~~y-------l~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~ 535 (633)
|+ |++.++.||+ ++.+..+++.+|+..++...+...| ....+..+..++. +.+++||||+|+.+++.++
T Consensus 178 Tl~n~~~~~~~l~-~~~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a 254 (720)
T 2zj8_A 178 TIGNPEELAEWLN-AELIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIR--KKKGALIFVNMRRKAERVA 254 (720)
T ss_dssp CCSCHHHHHHHTT-EEEEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHH--TTCCEEEECSCHHHHHHHH
T ss_pred CcCCHHHHHHHhC-CcccCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHh--CCCCEEEEecCHHHHHHHH
Confidence 99 7899999984 5667778888888766543322111 1112233333332 3589999999999999999
Q ss_pred HHHHHhhcccCC------------CC------------CceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCC
Q 035699 536 EILKQRTRGLGT------------KI------------AELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSL 591 (633)
Q Consensus 536 ~~L~~~~~~l~~------------~~------------~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGL 591 (633)
..|.+....+.. .. -...|.++||+|++.+|..+++.|+.|..+|||||+++++||
T Consensus 255 ~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gv 334 (720)
T 2zj8_A 255 LELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGI 334 (720)
T ss_dssp HHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGC
T ss_pred HHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccC
Confidence 999875322100 00 012489999999999999999999999999999999999999
Q ss_pred CCCCccEEEeCCCCccccccCCCCceeeeeeeccHHHHhhcC
Q 035699 592 TIDGIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQRT 633 (633)
Q Consensus 592 dIp~V~~VID~G~~k~~~yd~~~g~~~l~~~~iSka~a~QR~ 633 (633)
|||++++||+.+ ..|| ..| ..|+|.++..||+
T Consensus 335 dip~~~~VI~~~----~~yd-~~g-----~~~~s~~~~~Qr~ 366 (720)
T 2zj8_A 335 NTPAFRVIIRDI----WRYS-DFG-----MERIPIIEVHQML 366 (720)
T ss_dssp CCCBSEEEECCS----EECC-SSS-----CEECCHHHHHHHH
T ss_pred CCCceEEEEcCC----eeec-CCC-----CccCCHHHHHHHH
Confidence 999999999964 3466 233 2688999999973
No 5
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=6.9e-33 Score=303.24 Aligned_cols=273 Identities=19% Similarity=0.231 Sum_probs=202.6
Q ss_pred CChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhcccc-------CCeeeecchhHHHHHHHHHHHHHHh---C
Q 035699 330 PIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTK-------QGKIGCTQLRRVAAMSVAARVSQEM---G 399 (633)
Q Consensus 330 Pi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~-------~gkilitqPrR~aA~qva~rva~e~---g 399 (633)
..+++|...++++.++++++++|+||||||+++..+++...... +.+++|++|||+||.|++..+.... +
T Consensus 78 ~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 157 (434)
T 2db3_A 78 IPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESY 157 (434)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSS
T ss_pred CCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCC
Confidence 46788889999999999999999999999999888877653321 2389999999999999988765543 2
Q ss_pred CcccceEeeee-ecc-cccCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eecc-------------------cCCCc
Q 035699 400 VKLGHEVGYSI-RFE-DCTSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLIN-------------------YRPDL 456 (633)
Q Consensus 400 ~~vg~~VGy~i-r~e-~~~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~~-------------------~rpdl 456 (633)
..++..+|... ... .....+++|+|+|||+|++++.... .+.+++++| |.+| .+++.
T Consensus 158 ~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~ 237 (434)
T 2db3_A 158 LKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEH 237 (434)
T ss_dssp CCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSC
T ss_pred cEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCc
Confidence 33332222111 101 1124578999999999999987765 789999998 3322 24678
Q ss_pred cEEEeecccCH--HhHh-hhhCCCCEEEeCC---eeeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHH
Q 035699 457 KLLISSATLDA--ENFS-DYFGSAPIFKIPR---RRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQ 530 (633)
Q Consensus 457 klil~SAT~~~--~~~s-~~f~~~pii~i~g---r~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~e 530 (633)
++++||||++. ..+. .|+.+...+.+.. ....+...+...+..... ..++.++.... +++||||+++..
T Consensus 238 q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~----~~l~~~l~~~~-~~~lVF~~t~~~ 312 (434)
T 2db3_A 238 QTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKR----SKLIEILSEQA-DGTIVFVETKRG 312 (434)
T ss_dssp EEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHH----HHHHHHHHHCC-TTEEEECSSHHH
T ss_pred eEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHHH----HHHHHHHHhCC-CCEEEEEeCcHH
Confidence 99999999954 3444 4555444444432 123455555555544433 33444444443 349999999999
Q ss_pred HHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccc-c
Q 035699 531 FETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVK-S 609 (633)
Q Consensus 531 ie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~-~ 609 (633)
++.+++.|... ++.+..+||++++.+|..+++.|+.|..+||||||++++|||||+|++|||+++|... .
T Consensus 313 a~~l~~~L~~~---------~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~ 383 (434)
T 2db3_A 313 ADFLASFLSEK---------EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDD 383 (434)
T ss_dssp HHHHHHHHHHT---------TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHH
T ss_pred HHHHHHHHHhC---------CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHH
Confidence 99999999874 7889999999999999999999999999999999999999999999999999999764 4
Q ss_pred ccCCCCc
Q 035699 610 YNPKTGM 616 (633)
Q Consensus 610 yd~~~g~ 616 (633)
|-++.|.
T Consensus 384 y~qriGR 390 (434)
T 2db3_A 384 YVHRIGR 390 (434)
T ss_dssp HHHHHTT
T ss_pred HHHHhcc
Confidence 6665443
No 6
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-33 Score=338.61 Aligned_cols=291 Identities=14% Similarity=0.148 Sum_probs=220.5
Q ss_pred HccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccce
Q 035699 326 RKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHE 405 (633)
Q Consensus 326 r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~ 405 (633)
...++++++|.++++++.++++++|+|+||||||+++.++++... ..+++++|++||++||.|++.++...++ .
T Consensus 180 ~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l-~~g~rvlvl~PtraLa~Q~~~~l~~~~~-----~ 253 (1108)
T 3l9o_A 180 TYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSL-KNKQRVIYTSPIKALSNQKYRELLAEFG-----D 253 (1108)
T ss_dssp CCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHHHHTS-----S
T ss_pred hCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHH-hcCCeEEEEcCcHHHHHHHHHHHHHHhC-----C
Confidence 345678999999999999999999999999999999988888763 4456999999999999999999998887 3
Q ss_pred EeeeeecccccCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eecc-----------------cCCCccEEEeeccc-
Q 035699 406 VGYSIRFEDCTSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLIN-----------------YRPDLKLLISSATL- 465 (633)
Q Consensus 406 VGy~ir~e~~~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~~-----------------~rpdlklil~SAT~- 465 (633)
||+ +.++......++|+|||||+|++++..++ .+.++++|| |.+| ..+++++|+||||+
T Consensus 254 Vgl-ltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~qvl~lSATip 332 (1108)
T 3l9o_A 254 VGL-MTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIP 332 (1108)
T ss_dssp EEE-ECSSCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTSEEEEEECSCS
T ss_pred ccE-EeCccccCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHHhcCCCceEEEEcCCCC
Confidence 555 33444456678999999999999998877 488999998 5554 23578999999999
Q ss_pred CHHhHhhhhC-----CCCEEEeCCeeeeEEEEEEcCCch---------------hHH-----------------------
Q 035699 466 DAENFSDYFG-----SAPIFKIPRRRYHVELFYTKAPEA---------------DYI----------------------- 502 (633)
Q Consensus 466 ~~~~~s~~f~-----~~pii~i~gr~~pv~~~y~~~~~~---------------~yl----------------------- 502 (633)
+...|..|+. .+.++..+.+..|+..++.+.... ++.
T Consensus 333 n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 412 (1108)
T 3l9o_A 333 NAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKK 412 (1108)
T ss_dssp SCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC-----------------
T ss_pred CHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhccccccccccccc
Confidence 6666776653 244566677777877665432110 000
Q ss_pred -------------HHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccC---------------------CC
Q 035699 503 -------------EAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLG---------------------TK 548 (633)
Q Consensus 503 -------------~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~---------------------~~ 548 (633)
...+..++..+.....+++||||+++..|+.++..|....-... ..
T Consensus 413 ~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~ 492 (1108)
T 3l9o_A 413 GQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRE 492 (1108)
T ss_dssp ------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTC
T ss_pred ccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhh
Confidence 22344455666666678999999999999999998854210000 00
Q ss_pred CC---------ceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccccccCCCCceee
Q 035699 549 IA---------ELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVKSYNPKTGMESL 619 (633)
Q Consensus 549 ~~---------~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~~yd~~~g~~~l 619 (633)
.+ ...|.++||+|++..|..++..|+.|..+|||||+++++|||||+|++||+++.+ ||+.
T Consensus 493 l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~----~d~~------ 562 (1108)
T 3l9o_A 493 LPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRK----WDGQ------ 562 (1108)
T ss_dssp CHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEE----ESSS------
T ss_pred hhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcc----cCcc------
Confidence 00 0128999999999999999999999999999999999999999999999987543 3432
Q ss_pred eeeeccHHHHhhcC
Q 035699 620 LVNPISKASANQRT 633 (633)
Q Consensus 620 ~~~~iSka~a~QR~ 633 (633)
...|+|.++..||+
T Consensus 563 ~~r~iS~~eyiQr~ 576 (1108)
T 3l9o_A 563 QFRWVSGGEYIQMS 576 (1108)
T ss_dssp CEEECCHHHHHHHH
T ss_pred ccccCCHHHHHHhh
Confidence 24578999998873
No 7
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=2e-32 Score=293.19 Aligned_cols=270 Identities=16% Similarity=0.177 Sum_probs=206.1
Q ss_pred ccCCChHHHHHHHHHHHcC--CeEEEeccCCChhhchHHHHHHHhccccC--CeeeecchhHHHHHHHHHHHHHHhCCcc
Q 035699 327 KTLPIYPFREELLQAVSEY--PVLVIVGETGSGKTTQIPQYLYEAGYTKQ--GKIGCTQLRRVAAMSVAARVSQEMGVKL 402 (633)
Q Consensus 327 ~~LPi~~~q~~il~al~~~--~~vIi~a~TGSGKTt~lp~~Lle~~~~~~--gkilitqPrR~aA~qva~rva~e~g~~v 402 (633)
.--..+++|.++++.+.++ ++++++||||||||++++.+++....... ++++|++|+++||.|++..+........
T Consensus 44 g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 123 (412)
T 3fht_A 44 GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 123 (412)
T ss_dssp TCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcc
Confidence 3345678888899999886 89999999999999999888887654322 2899999999999999987766554333
Q ss_pred cceEeeeeeccccc---CCCCcEEEeCchHHHHHHhcCC--CCCCceeee-eeccc------------------CCCccE
Q 035699 403 GHEVGYSIRFEDCT---SDKTVLKYMTDGMLLREIVLEP--SLESYSVLI-DLINY------------------RPDLKL 458 (633)
Q Consensus 403 g~~VGy~ir~e~~~---s~~t~Iiv~TpGrLL~~l~~~~--~L~~~s~vI-di~~~------------------rpdlkl 458 (633)
+..+++........ ...++|+|+|||+|++++.... .+.++++|| |.+|. .++.++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (412)
T 3fht_A 124 ELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQM 203 (412)
T ss_dssp TCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEE
T ss_pred cceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceE
Confidence 45566555544322 3457899999999999986644 568899988 55431 346789
Q ss_pred EEeecccCHH--hHh-hhhCCCCEEEeCCe---eeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHH
Q 035699 459 LISSATLDAE--NFS-DYFGSAPIFKIPRR---RYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFE 532 (633)
Q Consensus 459 il~SAT~~~~--~~s-~~f~~~pii~i~gr---~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie 532 (633)
++||||++.. .+. .++.++..+.+... ...+..++...+..+. .+..+..++.....+++||||+++..++
T Consensus 204 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~lvf~~~~~~~~ 280 (412)
T 3fht_A 204 LLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE---KFQALCNLYGAITIAQAMIFCHTRKTAS 280 (412)
T ss_dssp EEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHH---HHHHHHHHHHHHSSSEEEEECSSHHHHH
T ss_pred EEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHH---HHHHHHHHHhhcCCCCEEEEeCCHHHHH
Confidence 9999999653 333 45555545544332 2234555555444332 3344445555556689999999999999
Q ss_pred HHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccc
Q 035699 533 TAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVK 608 (633)
Q Consensus 533 ~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~ 608 (633)
.+++.|... ++.+..+||+|++.+|..+++.|+.|..+|||||+++++|||||++++||++|+|..+
T Consensus 281 ~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~ 347 (412)
T 3fht_A 281 WLAAELSKE---------GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDK 347 (412)
T ss_dssp HHHHHHHHT---------TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCS
T ss_pred HHHHHHHhC---------CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCC
Confidence 999999884 6789999999999999999999999999999999999999999999999999999654
No 8
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=1.3e-33 Score=322.14 Aligned_cols=265 Identities=20% Similarity=0.199 Sum_probs=199.7
Q ss_pred HHHHccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcc
Q 035699 323 QEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKL 402 (633)
Q Consensus 323 ~~~r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~v 402 (633)
.+.|..||++.+|+.++.++.++++++++|+||||||+++++++++. +.+++|++|||+||.|++.++++.++..+
T Consensus 210 l~~r~~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~----g~~vLVl~PTReLA~Qia~~l~~~~g~~v 285 (666)
T 3o8b_A 210 METTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ----GYKVLVLNPSVAATLGFGAYMSKAHGIDP 285 (666)
T ss_dssp HHHHHHSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT----TCCEEEEESCHHHHHHHHHHHHHHHSCCC
T ss_pred hhhhccCCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC----CCeEEEEcchHHHHHHHHHHHHHHhCCCe
Confidence 45588999999999999999999999999999999999999999874 23899999999999999999999999888
Q ss_pred cceEeeeeecccccCCCCcEEEeCchHHHHHHhcCCCCCCceeee-eecccC---------------C---CccEEEeec
Q 035699 403 GHEVGYSIRFEDCTSDKTVLKYMTDGMLLREIVLEPSLESYSVLI-DLINYR---------------P---DLKLLISSA 463 (633)
Q Consensus 403 g~~VGy~ir~e~~~s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-di~~~r---------------p---dlklil~SA 463 (633)
+..+|+.. ...+++|+|+|||+|+. .....+.++++|| |++|.. + ...+++|||
T Consensus 286 g~~vG~~~-----~~~~~~IlV~TPGrLl~--~~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~SA 358 (666)
T 3o8b_A 286 NIRTGVRT-----ITTGAPVTYSTYGKFLA--DGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATA 358 (666)
T ss_dssp EEECSSCE-----ECCCCSEEEEEHHHHHH--TTSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEES
T ss_pred eEEECcEe-----ccCCCCEEEECcHHHHh--CCCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEECC
Confidence 77777533 35678999999999842 1122677899988 443322 2 223677899
Q ss_pred ccCHHhHhhhhCCCCEEEeCCeeeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhc
Q 035699 464 TLDAENFSDYFGSAPIFKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTR 543 (633)
Q Consensus 464 T~~~~~~s~~f~~~pii~i~gr~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~ 543 (633)
|++.. +. +....+..+.-...+ .+.+. ...-. +.....+++||||+|++.++.+++.|...
T Consensus 359 T~~~~-i~--~~~p~i~~v~~~~~~-~i~~~--~~~~~-----------l~~~~~~~vLVFv~Tr~~ae~la~~L~~~-- 419 (666)
T 3o8b_A 359 TPPGS-VT--VPHPNIEEVALSNTG-EIPFY--GKAIP-----------IEAIRGGRHLIFCHSKKKCDELAAKLSGL-- 419 (666)
T ss_dssp SCTTC-CC--CCCTTEEEEECBSCS-SEEET--TEEEC-----------GGGSSSSEEEEECSCHHHHHHHHHHHHTT--
T ss_pred CCCcc-cc--cCCcceEEEeecccc-hhHHH--Hhhhh-----------hhhccCCcEEEEeCCHHHHHHHHHHHHhC--
Confidence 99642 11 111111111000000 00000 00000 11235689999999999999999999874
Q ss_pred ccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCcccc----ccCCCCceee
Q 035699 544 GLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVKS----YNPKTGMESL 619 (633)
Q Consensus 544 ~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~~----yd~~~g~~~l 619 (633)
++.+.++||+|++.+ |+.+..+||||||++++||||| |++|||+|+.+..+ |||+.|+..+
T Consensus 420 -------g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~ 484 (666)
T 3o8b_A 420 -------GINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETT 484 (666)
T ss_dssp -------TCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEE
T ss_pred -------CCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccc
Confidence 788999999999874 4456679999999999999998 99999999988664 7788998775
Q ss_pred eeeeccHHHHhhcC
Q 035699 620 LVNPISKASANQRT 633 (633)
Q Consensus 620 ~~~~iSka~a~QR~ 633 (633)
..|+|.++..||+
T Consensus 485 -~~P~s~~syiQRi 497 (666)
T 3o8b_A 485 -TVPQDAVSRSQRR 497 (666)
T ss_dssp -EEECBHHHHHHHH
T ss_pred -cCcCCHHHHHHHh
Confidence 7899999999984
No 9
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=5.4e-33 Score=298.24 Aligned_cols=278 Identities=12% Similarity=0.179 Sum_probs=204.9
Q ss_pred HccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccc--cCCeeeecchhHHHHHHHHHHHHHHhCCccc
Q 035699 326 RKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYT--KQGKIGCTQLRRVAAMSVAARVSQEMGVKLG 403 (633)
Q Consensus 326 r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~--~~gkilitqPrR~aA~qva~rva~e~g~~vg 403 (633)
..-.+.+++|.++++++.++++++++|+||||||++++++++..... .+++++|++|+++||.|++..+.... ...+
T Consensus 58 ~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~-~~~~ 136 (414)
T 3eiq_A 58 YGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALG-DYMG 136 (414)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHG-GGSC
T ss_pred cCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHh-cccC
Confidence 56678899999999999999999999999999999999998876543 23489999999999999988776643 3334
Q ss_pred ceEeeeeecccc-------cCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eecc-----------------cCCCcc
Q 035699 404 HEVGYSIRFEDC-------TSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLIN-----------------YRPDLK 457 (633)
Q Consensus 404 ~~VGy~ir~e~~-------~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~~-----------------~rpdlk 457 (633)
..++..+.+... ....++|+|+|||+|++++.... .+..+++|| |.+| ..++.+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~ 216 (414)
T 3eiq_A 137 ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQ 216 (414)
T ss_dssp CCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCE
T ss_pred ceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCe
Confidence 444433333221 12568999999999999998766 688899888 4433 236789
Q ss_pred EEEeecccCHHh---HhhhhCCCCEEEeCCeee---eEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHH
Q 035699 458 LLISSATLDAEN---FSDYFGSAPIFKIPRRRY---HVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQF 531 (633)
Q Consensus 458 lil~SAT~~~~~---~s~~f~~~pii~i~gr~~---pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~ei 531 (633)
+++||||++... +..++.++..+.+..... .+..++.......+ .+..+..++.....+++||||+++..+
T Consensus 217 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~lvf~~~~~~~ 293 (414)
T 3eiq_A 217 VVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEW---KLDTLCDLYETLTITQAVIFINTRRKV 293 (414)
T ss_dssp EEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTT---HHHHHHHHHHSSCCSSCEEECSCHHHH
T ss_pred EEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHh---HHHHHHHHHHhCCCCcEEEEeCCHHHH
Confidence 999999996532 334555554444433322 23444544443332 234556666666778999999999999
Q ss_pred HHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccc-cc
Q 035699 532 ETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVK-SY 610 (633)
Q Consensus 532 e~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~-~y 610 (633)
+.+++.|... ++.+..+||+|++.+|..+++.|+.|..+|||||+++++|||||+|++||++++|... .|
T Consensus 294 ~~l~~~l~~~---------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~ 364 (414)
T 3eiq_A 294 DWLTEKMHAR---------DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENY 364 (414)
T ss_dssp HHHHHHHHTT---------TCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHH
T ss_pred HHHHHHHHhc---------CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHh
Confidence 9999999874 7889999999999999999999999999999999999999999999999999998754 36
Q ss_pred cCCCCc
Q 035699 611 NPKTGM 616 (633)
Q Consensus 611 d~~~g~ 616 (633)
..+.|.
T Consensus 365 ~Qr~GR 370 (414)
T 3eiq_A 365 IHRIGR 370 (414)
T ss_dssp HHHSCC
T ss_pred hhhcCc
Confidence 555543
No 10
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.3e-33 Score=310.90 Aligned_cols=261 Identities=15% Similarity=0.177 Sum_probs=201.5
Q ss_pred HHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccceEeeeeeccc
Q 035699 335 REELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFED 414 (633)
Q Consensus 335 q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~VGy~ir~e~ 414 (633)
|+.|..++.++++++++||||||||+++..+++......+++++|++|||+||.|++..+. |..++|......
T Consensus 9 q~~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~~~ 81 (451)
T 2jlq_A 9 YEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALR-------GLPIRYQTPAVK 81 (451)
T ss_dssp CCCCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT-------TSCEEECCTTCS
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhc-------Cceeeeeecccc
Confidence 3444445556676799999999999987777765544455699999999999999987652 334666555442
Q ss_pred -ccCCCCcEEEeCchHHHHHHhcCCCCCCceeee-eeccc-----------------CCCccEEEeecccCHHhHhhhhC
Q 035699 415 -CTSDKTVLKYMTDGMLLREIVLEPSLESYSVLI-DLINY-----------------RPDLKLLISSATLDAENFSDYFG 475 (633)
Q Consensus 415 -~~s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-di~~~-----------------rpdlklil~SAT~~~~~~s~~f~ 475 (633)
....++.|.++|+|+|.+.+...+.|.++++|| |.+|. .++.++++||||++...+..++.
T Consensus 82 ~~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~ 161 (451)
T 2jlq_A 82 SDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQS 161 (451)
T ss_dssp CCCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC
T ss_pred ccCCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccCCcchHHHHHHHHHhhcCCCceEEEEccCCCccchhhhcC
Confidence 224567899999999999999989999999999 65543 25789999999997765555556
Q ss_pred CCCEEEeCCeeeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEE
Q 035699 476 SAPIFKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIIC 555 (633)
Q Consensus 476 ~~pii~i~gr~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~ 555 (633)
+++++.++ +.+|.. .|.. +...+.. ..+++||||||+..++.+++.|... ++.+.
T Consensus 162 ~~~~~~~~-~~~p~~---------~~~~-----~~~~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~---------g~~~~ 216 (451)
T 2jlq_A 162 NSPIEDIE-REIPER---------SWNT-----GFDWITD-YQGKTVWFVPSIKAGNDIANCLRKS---------GKRVI 216 (451)
T ss_dssp SSCEEEEE-CCCCSS---------CCSS-----SCHHHHH-CCSCEEEECSSHHHHHHHHHHHHTT---------TCCEE
T ss_pred CCceEecC-ccCCch---------hhHH-----HHHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHc---------CCeEE
Confidence 66666543 222211 1100 0111111 2579999999999999999999874 67889
Q ss_pred eccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccccccCCCCceeeee---eeccHHHHhhc
Q 035699 556 PIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVKSYNPKTGMESLLV---NPISKASANQR 632 (633)
Q Consensus 556 ~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~~yd~~~g~~~l~~---~~iSka~a~QR 632 (633)
++||.+. ..+++.|+.|..+||||||++++|||||+ ++|||+|+++.+.|| ..|+..+.. .|+|.++..||
T Consensus 217 ~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d-~~~~~~l~~~~~~p~s~~~y~Qr 290 (451)
T 2jlq_A 217 QLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVIL-TDGPERVILAGPIPVTPASAAQR 290 (451)
T ss_dssp EECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEE-CSSSCEEEEEEEEECCHHHHHHH
T ss_pred ECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccc-ccccceeeecccccCCHHHHHHh
Confidence 9999865 47899999999999999999999999999 999999999999998 678888887 99999999998
Q ss_pred C
Q 035699 633 T 633 (633)
Q Consensus 633 ~ 633 (633)
+
T Consensus 291 ~ 291 (451)
T 2jlq_A 291 R 291 (451)
T ss_dssp H
T ss_pred c
Confidence 4
No 11
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.98 E-value=8.1e-33 Score=305.23 Aligned_cols=278 Identities=16% Similarity=0.195 Sum_probs=115.3
Q ss_pred ccCCChHHHHHHHHHHHcC--CeEEEeccCCChhhchHHHHHHHhccccCC--eeeecchhHHHHHHHHHHHHHHhCCcc
Q 035699 327 KTLPIYPFREELLQAVSEY--PVLVIVGETGSGKTTQIPQYLYEAGYTKQG--KIGCTQLRRVAAMSVAARVSQEMGVKL 402 (633)
Q Consensus 327 ~~LPi~~~q~~il~al~~~--~~vIi~a~TGSGKTt~lp~~Lle~~~~~~g--kilitqPrR~aA~qva~rva~e~g~~v 402 (633)
.--..+++|..+++.+..+ ++++++|+||||||+++.++++.......+ +++|++|+++||.|++..+........
T Consensus 111 g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 190 (479)
T 3fmp_B 111 GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 190 (479)
T ss_dssp TCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTST
T ss_pred CCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCC
Confidence 4456778888899999886 899999999999999999998876543322 899999999999999887766654433
Q ss_pred cceEeeeeeccccc---CCCCcEEEeCchHHHHHHhcCC--CCCCceeee-eecc------------------cCCCccE
Q 035699 403 GHEVGYSIRFEDCT---SDKTVLKYMTDGMLLREIVLEP--SLESYSVLI-DLIN------------------YRPDLKL 458 (633)
Q Consensus 403 g~~VGy~ir~e~~~---s~~t~Iiv~TpGrLL~~l~~~~--~L~~~s~vI-di~~------------------~rpdlkl 458 (633)
+..+++.++..... ...++|+|||||+|++++.... .+.++++|| |.+| ..++.++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~ 270 (479)
T 3fmp_B 191 ELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQM 270 (479)
T ss_dssp TCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEE
T ss_pred CceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceE
Confidence 44455555443322 3457899999999999997644 568999988 4433 1346799
Q ss_pred EEeecccCHH--hHh-hhhCCCCEEEeCCeee---eEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHH
Q 035699 459 LISSATLDAE--NFS-DYFGSAPIFKIPRRRY---HVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFE 532 (633)
Q Consensus 459 il~SAT~~~~--~~s-~~f~~~pii~i~gr~~---pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie 532 (633)
++||||++.. .+. .++.++.++.+..... .+...+...+... .....++.++.....+++||||+++..++
T Consensus 271 i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~lvF~~s~~~~~ 347 (479)
T 3fmp_B 271 LLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRD---EKFQALCNLYGAITIAQAMIFCHTRKTAS 347 (479)
T ss_dssp EEEESCCCHHHHHHHHHHSSSEEEEEEC----------------------------------------------------
T ss_pred EEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHH---HHHHHHHHHHhhccCCceEEEeCcHHHHH
Confidence 9999999653 344 4555555555543322 2233333333222 23344555555556689999999999999
Q ss_pred HHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccc----
Q 035699 533 TAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVK---- 608 (633)
Q Consensus 533 ~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~---- 608 (633)
.+++.|... ++.+..+||+|++.+|..+++.|+.|..+|||||+++++|||||+|++|||+++|...
T Consensus 348 ~l~~~L~~~---------~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~ 418 (479)
T 3fmp_B 348 WLAAELSKE---------GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNP 418 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhC---------CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCccCC
Confidence 999999874 6789999999999999999999999999999999999999999999999999999643
Q ss_pred ---cccCCCCc
Q 035699 609 ---SYNPKTGM 616 (633)
Q Consensus 609 ---~yd~~~g~ 616 (633)
.|-++.|.
T Consensus 419 s~~~~~Qr~GR 429 (479)
T 3fmp_B 419 DNETYLHRIGR 429 (479)
T ss_dssp -----------
T ss_pred CHHHHHHHhcc
Confidence 46665544
No 12
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.98 E-value=2.2e-31 Score=282.82 Aligned_cols=267 Identities=15% Similarity=0.195 Sum_probs=202.3
Q ss_pred ccCCChHHHHHHHHHHHcC--CeEEEeccCCChhhchHHHHHHHhcccc--CCeeeecchhHHHHHHHHHHHHHHhCCcc
Q 035699 327 KTLPIYPFREELLQAVSEY--PVLVIVGETGSGKTTQIPQYLYEAGYTK--QGKIGCTQLRRVAAMSVAARVSQEMGVKL 402 (633)
Q Consensus 327 ~~LPi~~~q~~il~al~~~--~~vIi~a~TGSGKTt~lp~~Lle~~~~~--~gkilitqPrR~aA~qva~rva~e~g~~v 402 (633)
.-...+++|.++++.+..+ ++++++||||||||++++.+++...... +++++|++|+++||.|++..+... +...
T Consensus 24 ~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~-~~~~ 102 (395)
T 3pey_A 24 KFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEM-GKFT 102 (395)
T ss_dssp TCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHH-TTTS
T ss_pred CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHH-hccc
Confidence 4456788999999999987 8999999999999999998888764432 338999999999999999877554 3333
Q ss_pred cceEeeeeec--ccccCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eecc------------------cCCCccEEE
Q 035699 403 GHEVGYSIRF--EDCTSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLIN------------------YRPDLKLLI 460 (633)
Q Consensus 403 g~~VGy~ir~--e~~~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~~------------------~rpdlklil 460 (633)
+..++..... .......++|+|+|||+|++.+.... .+.++++|| |.+| ..++.++++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~ 182 (395)
T 3pey_A 103 KITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVL 182 (395)
T ss_dssp CCCEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEE
T ss_pred CeeEEEEecCchhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEE
Confidence 3333332222 22223468999999999999987765 788999988 5443 135689999
Q ss_pred eecccCH--HhHh-hhhCCCCEEEeCCeee---eEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHH
Q 035699 461 SSATLDA--ENFS-DYFGSAPIFKIPRRRY---HVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETA 534 (633)
Q Consensus 461 ~SAT~~~--~~~s-~~f~~~pii~i~gr~~---pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l 534 (633)
||||+.. ..+. .++.+...+.+..... .+...+...+... .....+..++.....+++||||+++..++.+
T Consensus 183 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l 259 (395)
T 3pey_A 183 FSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEA---DKFDVLTELYGLMTIGSSIIFVATKKTANVL 259 (395)
T ss_dssp EESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHH---HHHHHHHHHHTTTTSSEEEEECSCHHHHHHH
T ss_pred EEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchH---HHHHHHHHHHHhccCCCEEEEeCCHHHHHHH
Confidence 9999964 3344 3444444444433322 2444454443322 2233445555555678999999999999999
Q ss_pred HHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCc
Q 035699 535 EEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAK 606 (633)
Q Consensus 535 ~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k 606 (633)
++.|... ++.+..+||+|++.+|..+++.|+.|..+|||||+++++|||||++++||++++|.
T Consensus 260 ~~~l~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~ 322 (395)
T 3pey_A 260 YGKLKSE---------GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPT 322 (395)
T ss_dssp HHHHHHT---------TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCB
T ss_pred HHHHHhc---------CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCC
Confidence 9999874 67899999999999999999999999999999999999999999999999999887
No 13
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.97 E-value=1.3e-30 Score=280.28 Aligned_cols=276 Identities=17% Similarity=0.132 Sum_probs=200.3
Q ss_pred HccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhcccc--------------------CCeeeecchhHH
Q 035699 326 RKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTK--------------------QGKIGCTQLRRV 385 (633)
Q Consensus 326 r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~--------------------~gkilitqPrR~ 385 (633)
..--..+++|.++++++.++++++++||||||||+++..+++...... ..+++|+.|||+
T Consensus 33 ~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 112 (417)
T 2i4i_A 33 TRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRE 112 (417)
T ss_dssp HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHH
T ss_pred CCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHH
Confidence 344467889999999999999999999999999998887776543211 136999999999
Q ss_pred HHHHHHHHHHHHhCCcccceEeeeeeccc------ccCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eeccc-----
Q 035699 386 AAMSVAARVSQEMGVKLGHEVGYSIRFED------CTSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLINY----- 452 (633)
Q Consensus 386 aA~qva~rva~e~g~~vg~~VGy~ir~e~------~~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~~~----- 452 (633)
||.|++..+.... ...+..++....+.. ....+++|+|+|||+|++++.... .+.++++|| |.+|.
T Consensus 113 L~~q~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~~~~ 191 (417)
T 2i4i_A 113 LAVQIYEEARKFS-YRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMG 191 (417)
T ss_dssp HHHHHHHHHHHHH-TTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHHHTT
T ss_pred HHHHHHHHHHHHh-CcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHhhccC
Confidence 9999998776543 222323332222211 113568999999999999988766 688999988 33321
Q ss_pred --------------C--CCccEEEeecccCH--HhHhhhhCCCCE-EEeCCe---eeeEEEEEEcCCchhHHHHHHHHHH
Q 035699 453 --------------R--PDLKLLISSATLDA--ENFSDYFGSAPI-FKIPRR---RYHVELFYTKAPEADYIEAAIVTAL 510 (633)
Q Consensus 453 --------------r--pdlklil~SAT~~~--~~~s~~f~~~pi-i~i~gr---~~pv~~~y~~~~~~~yl~~~v~~l~ 510 (633)
. +..++++||||++. ..+...+.+.++ +.+... ...+...+...+..+.. ..+.
T Consensus 192 ~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~l~ 267 (417)
T 2i4i_A 192 FEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKR----SFLL 267 (417)
T ss_dssp CHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEEEEEEECCGGGHH----HHHH
T ss_pred cHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCceEEEEEeccHhHH----HHHH
Confidence 1 25789999999954 344443334444 333211 12234444444444332 2333
Q ss_pred HHHhcC-CCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCcccc
Q 035699 511 QIHVNE-PIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAET 589 (633)
Q Consensus 511 ~i~~~~-~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAer 589 (633)
.++... ..+++||||++...++.+++.|... ++.+..+||+|++.+|..+++.|+.|..+|||||+++++
T Consensus 268 ~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~ 338 (417)
T 2i4i_A 268 DLLNATGKDSLTLVFVETKKGADSLEDFLYHE---------GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAAR 338 (417)
T ss_dssp HHHHTCCTTCEEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHT
T ss_pred HHHHhcCCCCeEEEEECCHHHHHHHHHHHHHC---------CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhc
Confidence 444443 4578999999999999999999874 688999999999999999999999999999999999999
Q ss_pred CCCCCCccEEEeCCCCccc-cccCCCC
Q 035699 590 SLTIDGIKYVIDPGFAKVK-SYNPKTG 615 (633)
Q Consensus 590 GLdIp~V~~VID~G~~k~~-~yd~~~g 615 (633)
|||||+|++||++++|... .|-.+.|
T Consensus 339 Gidip~v~~Vi~~~~p~s~~~~~Qr~G 365 (417)
T 2i4i_A 339 GLDISNVKHVINFDLPSDIEEYVHRIG 365 (417)
T ss_dssp TSCCCCEEEEEESSCCSSHHHHHHHHT
T ss_pred CCCcccCCEEEEEcCCCCHHHHHHhcC
Confidence 9999999999999998753 3555443
No 14
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.97 E-value=1.8e-31 Score=286.97 Aligned_cols=273 Identities=14% Similarity=0.232 Sum_probs=204.1
Q ss_pred CChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccc--cCCeeeecchhHHHHHHHHHHHHHHhCCcccceEe
Q 035699 330 PIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYT--KQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVG 407 (633)
Q Consensus 330 Pi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~--~~gkilitqPrR~aA~qva~rva~e~g~~vg~~VG 407 (633)
..+++|.++++++.++++++++|+||||||++++.+++..... .+++++|++||++||.|++..+.. ++...+..++
T Consensus 59 ~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~ 137 (410)
T 2j0s_A 59 KPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLA-LGDYMNVQCH 137 (410)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHH-HTTTTTCCEE
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHH-HhccCCeEEE
Confidence 4788999999999999999999999999999999988876432 234899999999999999987755 3433444444
Q ss_pred eeeecccc------cCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eecc----------------c-CCCccEEEee
Q 035699 408 YSIRFEDC------TSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLIN----------------Y-RPDLKLLISS 462 (633)
Q Consensus 408 y~ir~e~~------~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~~----------------~-rpdlklil~S 462 (633)
....+... ...+++|+|+|||+|++++.... .+..+++|| |.+| . .++.++++||
T Consensus 138 ~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 217 (410)
T 2j0s_A 138 ACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLIS 217 (410)
T ss_dssp EECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEE
T ss_pred EEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEE
Confidence 33332211 12357899999999999987765 688899888 4433 1 2567999999
Q ss_pred cccCHH--hH-hhhhCCCCEEEeCCee---eeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHH
Q 035699 463 ATLDAE--NF-SDYFGSAPIFKIPRRR---YHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEE 536 (633)
Q Consensus 463 AT~~~~--~~-s~~f~~~pii~i~gr~---~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~ 536 (633)
||+..+ .+ ..++.++..+.+.... ..+..++...+...+. ...+..++.....+++||||++...++.+++
T Consensus 218 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k---~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~ 294 (410)
T 2j0s_A 218 ATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWK---FDTLCDLYDTLTITQAVIFCNTKRKVDWLTE 294 (410)
T ss_dssp SCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHH---HHHHHHHHHHHTSSEEEEECSSHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhH---HHHHHHHHHhcCCCcEEEEEcCHHHHHHHHH
Confidence 999653 23 3455444334333221 2345555544433322 2334444444456799999999999999999
Q ss_pred HHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccc-cccCCCC
Q 035699 537 ILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVK-SYNPKTG 615 (633)
Q Consensus 537 ~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~-~yd~~~g 615 (633)
.|... ++.+..+||+|++.+|..+++.|..|..+|||||+++++|||||+|++||++++|... .|..+.|
T Consensus 295 ~L~~~---------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~G 365 (410)
T 2j0s_A 295 KMREA---------NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIG 365 (410)
T ss_dssp HHHHT---------TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHT
T ss_pred HHHhC---------CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcc
Confidence 99874 6789999999999999999999999999999999999999999999999999998754 3554444
No 15
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.97 E-value=7.8e-32 Score=297.47 Aligned_cols=258 Identities=17% Similarity=0.212 Sum_probs=190.6
Q ss_pred HHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccceEeeeeecccc-c
Q 035699 338 LLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDC-T 416 (633)
Q Consensus 338 il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~VGy~ir~e~~-~ 416 (633)
...++.++++++++||||||||++++++++......+++++|++|||+||.|++.++. |..+++....... .
T Consensus 14 ~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~~~~~~ 86 (459)
T 2z83_A 14 SPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALR-------GLPVRYQTSAVQREH 86 (459)
T ss_dssp -CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTT-------TSCEEECC-------
T ss_pred HHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhc-------CceEeEEecccccCC
Confidence 3667888999999999999999998888876644455689999999999999988764 3334444433221 2
Q ss_pred CCCCcEEEeCchHHHHHHhcCCCCCCceeee-eeccc-----------------CCCccEEEeecccCHHhHhhhhCCCC
Q 035699 417 SDKTVLKYMTDGMLLREIVLEPSLESYSVLI-DLINY-----------------RPDLKLLISSATLDAENFSDYFGSAP 478 (633)
Q Consensus 417 s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-di~~~-----------------rpdlklil~SAT~~~~~~s~~f~~~p 478 (633)
.+...|.++|.|.+.+.+...+.+.++++|| |.+|. .++.++|+||||++.....-...+.|
T Consensus 87 t~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~~~~~~~il~SAT~~~~~~~~~~~~~p 166 (459)
T 2z83_A 87 QGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVELGEAAAIFMTATPPGTTDPFPDSNAP 166 (459)
T ss_dssp -CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCCSSC
T ss_pred CCCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHhccCCccEEEEEcCCCcchhhhccCCCC
Confidence 3456788999999999999989999999999 66654 26789999999996542221223455
Q ss_pred EEEeCCeeeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEecc
Q 035699 479 IFKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIY 558 (633)
Q Consensus 479 ii~i~gr~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lH 558 (633)
++.+.. ..+...+.. ++..+.. ..+++||||||+..++.+++.|... ++.+.++|
T Consensus 167 i~~~~~----------~~~~~~~~~-----~~~~l~~-~~~~~LVF~~s~~~~~~l~~~L~~~---------g~~v~~lh 221 (459)
T 2z83_A 167 IHDLQD----------EIPDRAWSS-----GYEWITE-YAGKTVWFVASVKMGNEIAMCLQRA---------GKKVIQLN 221 (459)
T ss_dssp EEEEEC----------CCCSSCCSS-----CCHHHHH-CCSCEEEECSCHHHHHHHHHHHHHT---------TCCEEEES
T ss_pred eEEecc----------cCCcchhHH-----HHHHHHh-cCCCEEEEeCChHHHHHHHHHHHhc---------CCcEEecC
Confidence 554321 111111100 0111111 2689999999999999999999884 68899999
Q ss_pred CCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccccccCCCCceeeee---eeccHHHHhhcC
Q 035699 559 GNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVKSYNPKTGMESLLV---NPISKASANQRT 633 (633)
Q Consensus 559 g~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~~yd~~~g~~~l~~---~~iSka~a~QR~ 633 (633)
|. +|..+++.|+.|..+||||||++++|||||+ ++|||+|.++.+.|+ ..|+..+.. .|+|.++..||+
T Consensus 222 ~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~-~~~~~~~~~~~d~p~s~~~~~QR~ 293 (459)
T 2z83_A 222 RK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTIL-EEGEGRVILGNPSPITSASAAQRR 293 (459)
T ss_dssp TT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEE-CSSSCEEEECSCEECCHHHHHHHH
T ss_pred HH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccc-cccccccccccCCCCCHHHHHHhc
Confidence 95 6778999999999999999999999999999 999999999998877 356677766 999999999984
No 16
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.97 E-value=2e-31 Score=304.21 Aligned_cols=267 Identities=16% Similarity=0.211 Sum_probs=207.2
Q ss_pred HccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccce
Q 035699 326 RKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHE 405 (633)
Q Consensus 326 r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~ 405 (633)
++.+|++.+ . ++++.++++++++|+||||||++++.+++......+.+++|++|||+||.|++..+. |..
T Consensus 170 ~~~lpiq~~--~-i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~-------~~~ 239 (618)
T 2whx_A 170 RIGEPDYEV--D-EDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALR-------GLP 239 (618)
T ss_dssp CCCCCCCCC--C-GGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT-------TSC
T ss_pred ccCCCcccc--C-HHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhc-------CCc
Confidence 667888765 3 899999999999999999999998777776544444589999999999999987553 334
Q ss_pred Eeeeeec-ccccCCCCcEEEeCchHHHHHHhcCCCCCCceeee-eecccC-----------------CCccEEEeecccC
Q 035699 406 VGYSIRF-EDCTSDKTVLKYMTDGMLLREIVLEPSLESYSVLI-DLINYR-----------------PDLKLLISSATLD 466 (633)
Q Consensus 406 VGy~ir~-e~~~s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-di~~~r-----------------pdlklil~SAT~~ 466 (633)
+||..+. .....++..|.++|.|.|.+.+...+.|.++++|| |.+|.. ++.++|+||||++
T Consensus 240 v~~~~~~l~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~i~~~l~~~~~q~il~SAT~~ 319 (618)
T 2whx_A 240 IRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTATPP 319 (618)
T ss_dssp EEECCTTSSCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHHTSCEEEEECSSCT
T ss_pred eeEecccceeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCCCccHHHHHHHHHHHhcccCccEEEEECCCc
Confidence 6666654 23445677899999999999999989999999999 655432 6789999999995
Q ss_pred HHhHhhhhC-CCCEEEeCCeeeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhccc
Q 035699 467 AENFSDYFG-SAPIFKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGL 545 (633)
Q Consensus 467 ~~~~s~~f~-~~pii~i~gr~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l 545 (633)
.. ...++. +++++.+... + |...+ . .++..+.. ..+++||||+|+..++.+++.|...
T Consensus 320 ~~-~~~~~~~~~~~~~v~~~-~---------~~~~~-~----~ll~~l~~-~~~~~LVF~~s~~~a~~l~~~L~~~---- 378 (618)
T 2whx_A 320 GS-TDPFPQSNSPIEDIERE-I---------PERSW-N----TGFDWITD-YQGKTVWFVPSIKAGNDIANCLRKS---- 378 (618)
T ss_dssp TC-CCSSCCCSSCEEEEECC-C---------CSSCC-S----SSCHHHHH-CCSCEEEECSSHHHHHHHHHHHHHT----
T ss_pred hh-hhhhhccCCceeeeccc-C---------CHHHH-H----HHHHHHHh-CCCCEEEEECChhHHHHHHHHHHHc----
Confidence 43 223333 3444444322 1 11111 0 11122222 2689999999999999999999885
Q ss_pred CCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccccc--cCCCCceeeeeee
Q 035699 546 GTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVKSY--NPKTGMESLLVNP 623 (633)
Q Consensus 546 ~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~~y--d~~~g~~~l~~~~ 623 (633)
++.+.++||. +|..+++.|+.|..+||||||++++||||| |++|||+|+++.+.| +...++......|
T Consensus 379 -----g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P 448 (618)
T 2whx_A 379 -----GKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIP 448 (618)
T ss_dssp -----TCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEE
T ss_pred -----CCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEccccc
Confidence 6789999985 677899999999999999999999999997 999999999888775 5566788888999
Q ss_pred ccHHHHhhcC
Q 035699 624 ISKASANQRT 633 (633)
Q Consensus 624 iSka~a~QR~ 633 (633)
+|.++..||+
T Consensus 449 ~s~~~yiQR~ 458 (618)
T 2whx_A 449 VTPASAAQRR 458 (618)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHhc
Confidence 9999999984
No 17
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.97 E-value=1.3e-30 Score=292.88 Aligned_cols=282 Identities=15% Similarity=0.151 Sum_probs=200.3
Q ss_pred CCChHHHHHHHHHHH--cCCeEEEeccCCChhhchHHHHHHHhcccc------CCeeeecchhHHHHHHHHHHHHHHhCC
Q 035699 329 LPIYPFREELLQAVS--EYPVLVIVGETGSGKTTQIPQYLYEAGYTK------QGKIGCTQLRRVAAMSVAARVSQEMGV 400 (633)
Q Consensus 329 LPi~~~q~~il~al~--~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~------~gkilitqPrR~aA~qva~rva~e~g~ 400 (633)
-..+++|.++++++. .+++++++||||||||+++..+++...... +.+++|++||++||.|++..+....+.
T Consensus 93 ~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~ 172 (563)
T 3i5x_A 93 PGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDM 172 (563)
T ss_dssp SSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhh
Confidence 347889999999998 678999999999999999887776553322 128999999999999999988775432
Q ss_pred ccc---ceEeeeeecccc-------cCCCCcEEEeCchHHHHHHhcCC--CCCCceeee-eeccc---------------
Q 035699 401 KLG---HEVGYSIRFEDC-------TSDKTVLKYMTDGMLLREIVLEP--SLESYSVLI-DLINY--------------- 452 (633)
Q Consensus 401 ~vg---~~VGy~ir~e~~-------~s~~t~Iiv~TpGrLL~~l~~~~--~L~~~s~vI-di~~~--------------- 452 (633)
..+ ..+.....+... ...+++|+|||||+|++++.... .+..+++|| |.+|.
T Consensus 173 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~ 252 (563)
T 3i5x_A 173 NYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISG 252 (563)
T ss_dssp CGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHH
T ss_pred ccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHHHHHHHH
Confidence 111 112111111110 12367999999999999887543 588899988 54432
Q ss_pred ---------CCCccEEEeecccCH--HhHhhhhCCC-CEEEeCC-------eeeeEEEEEEcC-CchhHHHHHHHHHHHH
Q 035699 453 ---------RPDLKLLISSATLDA--ENFSDYFGSA-PIFKIPR-------RRYHVELFYTKA-PEADYIEAAIVTALQI 512 (633)
Q Consensus 453 ---------rpdlklil~SAT~~~--~~~s~~f~~~-pii~i~g-------r~~pv~~~y~~~-~~~~yl~~~v~~l~~i 512 (633)
.++.++++||||++. ..+...+... ..+.+.. ....+...+... .....+...+..+...
T Consensus 253 ~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 332 (563)
T 3i5x_A 253 ILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQ 332 (563)
T ss_dssp HHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHH
T ss_pred hhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHH
Confidence 235689999999953 4555444333 3333211 111223333222 2233334444444444
Q ss_pred Hhc-CCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCC
Q 035699 513 HVN-EPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSL 591 (633)
Q Consensus 513 ~~~-~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGL 591 (633)
+.. .+.+++||||+|+..++.+++.|..... .++.+..+||+|++.+|..+++.|..|..+|||||+++++||
T Consensus 333 ~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~------~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gi 406 (563)
T 3i5x_A 333 IKERDSNYKAIIFAPTVKFTSFLCSILKNEFK------KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGM 406 (563)
T ss_dssp HHHTTTCCEEEEECSCHHHHHHHHHHHHHHHT------TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSC
T ss_pred HhhcCCCCcEEEEcCcHHHHHHHHHHHHHhcc------CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCC
Confidence 433 4568999999999999999999988642 267899999999999999999999999999999999999999
Q ss_pred CCCCccEEEeCCCCccc-cccCCCCc
Q 035699 592 TIDGIKYVIDPGFAKVK-SYNPKTGM 616 (633)
Q Consensus 592 dIp~V~~VID~G~~k~~-~yd~~~g~ 616 (633)
|||+|++||++++|... .|-.+.|.
T Consensus 407 Dip~v~~VI~~~~p~s~~~y~Qr~GR 432 (563)
T 3i5x_A 407 DFPNVHEVLQIGVPSELANYIHRIGR 432 (563)
T ss_dssp CCTTCCEEEEESCCSSTTHHHHHHTT
T ss_pred CcccCCEEEEECCCCchhhhhhhcCc
Confidence 99999999999999764 36655443
No 18
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=9.2e-30 Score=267.61 Aligned_cols=265 Identities=18% Similarity=0.188 Sum_probs=201.4
Q ss_pred ccCCChHHHHHHHHHHHcC-CeEEEeccCCChhhchHHHHHHHhccccCC-eeeecchhHHHHHHHHHHHHHHhCCcccc
Q 035699 327 KTLPIYPFREELLQAVSEY-PVLVIVGETGSGKTTQIPQYLYEAGYTKQG-KIGCTQLRRVAAMSVAARVSQEMGVKLGH 404 (633)
Q Consensus 327 ~~LPi~~~q~~il~al~~~-~~vIi~a~TGSGKTt~lp~~Lle~~~~~~g-kilitqPrR~aA~qva~rva~e~g~~vg~ 404 (633)
.--..+++|.++++.+.++ +++++.||||||||++++.+++......++ +++|++|+++++.|++..+....+.. +.
T Consensus 25 g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~ 103 (367)
T 1hv8_A 25 GFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNK-NL 103 (367)
T ss_dssp TCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSS-CC
T ss_pred CCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCC-Cc
Confidence 3346788888888888877 799999999999999998888876544334 89999999999999999888776432 22
Q ss_pred eEeeeeeccc-----ccCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eecc-----------------cCCCccEEE
Q 035699 405 EVGYSIRFED-----CTSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLIN-----------------YRPDLKLLI 460 (633)
Q Consensus 405 ~VGy~ir~e~-----~~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~~-----------------~rpdlklil 460 (633)
.++....+.. .....++|+|+||++|++.+.... .+.+++++| |.+| ..++.++++
T Consensus 104 ~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~ 183 (367)
T 1hv8_A 104 KIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILL 183 (367)
T ss_dssp CEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEE
T ss_pred eEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCceEEE
Confidence 2322121111 111357899999999999987765 688999988 4443 125678999
Q ss_pred eecccCHH---hHhhhhCCCCEEEeCCeeeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHH
Q 035699 461 SSATLDAE---NFSDYFGSAPIFKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEI 537 (633)
Q Consensus 461 ~SAT~~~~---~~s~~f~~~pii~i~gr~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~ 537 (633)
||||++.. .+..++.+...+.... ...+...+...+..+.+. .+..++. ...+++||||++...++.+++.
T Consensus 184 ~SAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~l~~~l~-~~~~~~lvf~~~~~~~~~l~~~ 257 (367)
T 1hv8_A 184 FSATMPREILNLAKKYMGDYSFIKAKI-NANIEQSYVEVNENERFE----ALCRLLK-NKEFYGLVFCKTKRDTKELASM 257 (367)
T ss_dssp ECSSCCHHHHHHHHHHCCSEEEEECCS-SSSSEEEEEECCGGGHHH----HHHHHHC-STTCCEEEECSSHHHHHHHHHH
T ss_pred EeeccCHHHHHHHHHHcCCCeEEEecC-CCCceEEEEEeChHHHHH----HHHHHHh-cCCCcEEEEECCHHHHHHHHHH
Confidence 99999653 3445665554444332 234555555555555443 3333333 4568999999999999999999
Q ss_pred HHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCcc
Q 035699 538 LKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKV 607 (633)
Q Consensus 538 L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~ 607 (633)
|... ++.+..+||++++.+|..+++.|+.|..+|||||+++++|+|+|++++||++++|..
T Consensus 258 L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s 318 (367)
T 1hv8_A 258 LRDI---------GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQN 318 (367)
T ss_dssp HHHT---------TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSC
T ss_pred HHhc---------CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCC
Confidence 9874 678999999999999999999999999999999999999999999999999999865
No 19
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.97 E-value=2.5e-29 Score=269.14 Aligned_cols=264 Identities=15% Similarity=0.151 Sum_probs=200.0
Q ss_pred CChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhcccc--CCeeeecchhHHHHHHHHHHHHHHhCCcccceEe
Q 035699 330 PIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTK--QGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVG 407 (633)
Q Consensus 330 Pi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~--~gkilitqPrR~aA~qva~rva~e~g~~vg~~VG 407 (633)
..+++|.++++++.++++++++||||||||+++..+++...... +.+++|++|++++|.|++..+.... ...|..++
T Consensus 43 ~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~-~~~~~~~~ 121 (400)
T 1s2m_A 43 KPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLG-KHCGISCM 121 (400)
T ss_dssp SCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT-TTTTCCEE
T ss_pred CCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHh-cccCceEE
Confidence 37899999999999999999999999999999888887764432 3389999999999999988776543 23333343
Q ss_pred eeeeccc------ccCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eecc----------------c-CCCccEEEee
Q 035699 408 YSIRFED------CTSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLIN----------------Y-RPDLKLLISS 462 (633)
Q Consensus 408 y~ir~e~------~~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~~----------------~-rpdlklil~S 462 (633)
....... .....++|+|||||+|++.+.... .+.++++|| |.+| . .+..++++||
T Consensus 122 ~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lS 201 (400)
T 1s2m_A 122 VTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFS 201 (400)
T ss_dssp EECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEE
T ss_pred EEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCcCceEEEEE
Confidence 3222211 123567999999999999887665 788999988 4443 1 2467899999
Q ss_pred cccCH---HhHhhhhCCCCEEEeCCe--eeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHH
Q 035699 463 ATLDA---ENFSDYFGSAPIFKIPRR--RYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEI 537 (633)
Q Consensus 463 AT~~~---~~~s~~f~~~pii~i~gr--~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~ 537 (633)
||++. +.+..++..+..+.+... ...+..++........+. .+..++.....+++||||++...++.+++.
T Consensus 202 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~----~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~ 277 (400)
T 1s2m_A 202 ATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLH----CLNTLFSKLQINQAIIFCNSTNRVELLAKK 277 (400)
T ss_dssp SCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECCGGGHHH----HHHHHHHHSCCSEEEEECSSHHHHHHHHHH
T ss_pred ecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEEEEechhhHHH----HHHHHHhhcCCCcEEEEEecHHHHHHHHHH
Confidence 99964 234445544433333222 123455555555444332 333444445668999999999999999999
Q ss_pred HHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCcc
Q 035699 538 LKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKV 607 (633)
Q Consensus 538 L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~ 607 (633)
|... ++.+..+||+|++.+|..+++.|..|..+|||||+++++|||||++++||++++|..
T Consensus 278 L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s 338 (400)
T 1s2m_A 278 ITDL---------GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKT 338 (400)
T ss_dssp HHHH---------TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSS
T ss_pred HHhc---------CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCC
Confidence 9875 678999999999999999999999999999999999999999999999999999875
No 20
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.97 E-value=1.5e-29 Score=269.42 Aligned_cols=266 Identities=12% Similarity=0.107 Sum_probs=201.3
Q ss_pred CChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhcccc--CCeeeecchhHHHHHHHHHHHHHHhCCcccceEe
Q 035699 330 PIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTK--QGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVG 407 (633)
Q Consensus 330 Pi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~--~gkilitqPrR~aA~qva~rva~e~g~~vg~~VG 407 (633)
..+++|.++++++..++++++++|||||||+++..+++...... +++++|++|+++|+.|++..+........+..++
T Consensus 30 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 109 (391)
T 1xti_A 30 HPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 109 (391)
T ss_dssp SCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEE
T ss_pred CCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEE
Confidence 48999999999999999999999999999999888887664322 2389999999999999998877665332233444
Q ss_pred eeeecccc-------cCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eecc-----------------c-CCCccEEE
Q 035699 408 YSIRFEDC-------TSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLIN-----------------Y-RPDLKLLI 460 (633)
Q Consensus 408 y~ir~e~~-------~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~~-----------------~-rpdlklil 460 (633)
........ ....++|+|+|||+|+.++.... .+.++++|| |.+| . .++.++++
T Consensus 110 ~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~ 189 (391)
T 1xti_A 110 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 189 (391)
T ss_dssp EECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEE
T ss_pred EEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEE
Confidence 32222111 12347899999999999887765 688999888 4433 1 23678999
Q ss_pred eecccCH--H-hHhhhhCCCCEEEeCCee----eeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHH
Q 035699 461 SSATLDA--E-NFSDYFGSAPIFKIPRRR----YHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFET 533 (633)
Q Consensus 461 ~SAT~~~--~-~~s~~f~~~pii~i~gr~----~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~ 533 (633)
||||+.. . .+..++.++..+.+.... ..+..++...+...... .+..++.....+++||||++...++.
T Consensus 190 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~l~~~~~~~~lvf~~~~~~~~~ 265 (391)
T 1xti_A 190 FSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNR----KLFDLLDVLEFNQVVIFVKSVQRCIA 265 (391)
T ss_dssp EESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHH----HHHHHHHHSCCSEEEEECSCHHHHHH
T ss_pred EEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHH----HHHHHHHhcCCCcEEEEeCcHHHHHH
Confidence 9999943 3 344555555445443321 23455555555444332 33344444567899999999999999
Q ss_pred HHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccc
Q 035699 534 AEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVK 608 (633)
Q Consensus 534 l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~ 608 (633)
+++.|... ++.+..+||+|++.+|..+++.|+.|..+|||||+++++|||+|++++||++++|...
T Consensus 266 l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~ 331 (391)
T 1xti_A 266 LAQLLVEQ---------NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDS 331 (391)
T ss_dssp HHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSH
T ss_pred HHHHHHhC---------CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCH
Confidence 99999874 6789999999999999999999999999999999999999999999999999998753
No 21
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.97 E-value=3.4e-30 Score=291.61 Aligned_cols=279 Identities=15% Similarity=0.152 Sum_probs=199.3
Q ss_pred ChHHHHHHHHHHH--cCCeEEEeccCCChhhchHHHHHHHhcccc------CCeeeecchhHHHHHHHHHHHHHHhC---
Q 035699 331 IYPFREELLQAVS--EYPVLVIVGETGSGKTTQIPQYLYEAGYTK------QGKIGCTQLRRVAAMSVAARVSQEMG--- 399 (633)
Q Consensus 331 i~~~q~~il~al~--~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~------~gkilitqPrR~aA~qva~rva~e~g--- 399 (633)
.+++|.++++++. .+++++++||||||||+++..+++...... +.+++|++||++||.|++..+.....
T Consensus 44 ~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~ 123 (579)
T 3sqw_A 44 LTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNY 123 (579)
T ss_dssp CCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCG
T ss_pred CCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhhcc
Confidence 7889999999998 778999999999999999888877543322 12899999999999999998877642
Q ss_pred -CcccceEeeeeecccc-------cCCCCcEEEeCchHHHHHHhcCC--CCCCceeee-eeccc----------------
Q 035699 400 -VKLGHEVGYSIRFEDC-------TSDKTVLKYMTDGMLLREIVLEP--SLESYSVLI-DLINY---------------- 452 (633)
Q Consensus 400 -~~vg~~VGy~ir~e~~-------~s~~t~Iiv~TpGrLL~~l~~~~--~L~~~s~vI-di~~~---------------- 452 (633)
..... +.....+... ...+++|+|+|||+|++++.... .+..+++|| |.+|.
T Consensus 124 ~~~~~~-~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~ 202 (579)
T 3sqw_A 124 GLKKYA-CVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGI 202 (579)
T ss_dssp GGTTSC-EEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHH
T ss_pred cccceE-EEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHHHHHHHHH
Confidence 22111 1111111110 02368999999999999887542 688888888 44432
Q ss_pred --------CCCccEEEeecccCH--HhHhh-hhCCCCEEEeCC-------eeeeEEEEEEcCC-chhHHHHHHHHHHHHH
Q 035699 453 --------RPDLKLLISSATLDA--ENFSD-YFGSAPIFKIPR-------RRYHVELFYTKAP-EADYIEAAIVTALQIH 513 (633)
Q Consensus 453 --------rpdlklil~SAT~~~--~~~s~-~f~~~pii~i~g-------r~~pv~~~y~~~~-~~~yl~~~v~~l~~i~ 513 (633)
.++.++++||||++. ..+.. ++.+...+.+.. ....+...+...+ ........+..+...+
T Consensus 203 l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~ 282 (579)
T 3sqw_A 203 LNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQI 282 (579)
T ss_dssp HHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHH
T ss_pred hhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHH
Confidence 125689999999953 44444 444333333211 1112333333222 2333334444444444
Q ss_pred hc-CCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCC
Q 035699 514 VN-EPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLT 592 (633)
Q Consensus 514 ~~-~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLd 592 (633)
.. .+.+++||||+|+..++.+++.|..... .++.+..+||+|++.+|..+++.|..|..+|||||+++++|||
T Consensus 283 ~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~------~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiD 356 (579)
T 3sqw_A 283 KERDSNYKAIIFAPTVKFTSFLCSILKNEFK------KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMD 356 (579)
T ss_dssp HHTTTCCEEEEECSSHHHHHHHHHHHHHHHT------TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCC
T ss_pred hhcCCCCcEEEECCcHHHHHHHHHHHHHhhc------CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCC
Confidence 33 4568999999999999999999988642 2678999999999999999999999999999999999999999
Q ss_pred CCCccEEEeCCCCccc-cccCCCCc
Q 035699 593 IDGIKYVIDPGFAKVK-SYNPKTGM 616 (633)
Q Consensus 593 Ip~V~~VID~G~~k~~-~yd~~~g~ 616 (633)
||+|++||++++|... .|-++.|.
T Consensus 357 ip~v~~VI~~~~p~s~~~y~Qr~GR 381 (579)
T 3sqw_A 357 FPNVHEVLQIGVPSELANYIHRIGR 381 (579)
T ss_dssp CTTCCEEEEESCCSSTTHHHHHHTT
T ss_pred cccCCEEEEcCCCCCHHHhhhhccc
Confidence 9999999999999764 36655543
No 22
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5e-30 Score=306.77 Aligned_cols=288 Identities=16% Similarity=0.172 Sum_probs=214.2
Q ss_pred cCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccceEe
Q 035699 328 TLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVG 407 (633)
Q Consensus 328 ~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~VG 407 (633)
.++.+++|.++++++.++++++|+||||||||+++..+++.. +..+++++|++|+++||.|++..+...++ . ||
T Consensus 84 ~f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~-l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~-~----vg 157 (1010)
T 2xgj_A 84 PFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQS-LKNKQRVIYTSPIKALSNQKYRELLAEFG-D----VG 157 (1010)
T ss_dssp SSCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHH-HHTTCEEEEEESSHHHHHHHHHHHHHHHS-C----EE
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHH-hccCCeEEEECChHHHHHHHHHHHHHHhC-C----EE
Confidence 456899999999999999999999999999999876666554 33455999999999999999999988887 3 44
Q ss_pred eeeecccccCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eeccc-----------------CCCccEEEeeccc-CH
Q 035699 408 YSIRFEDCTSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLINY-----------------RPDLKLLISSATL-DA 467 (633)
Q Consensus 408 y~ir~e~~~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~~~-----------------rpdlklil~SAT~-~~ 467 (633)
. +.++......++|+|||||+|.+++.... .+.++++|| |.+|. .++.++|+||||+ |.
T Consensus 158 l-ltGd~~~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~il~LSATi~n~ 236 (1010)
T 2xgj_A 158 L-MTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNA 236 (1010)
T ss_dssp E-ECSSCEECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCEEEEEECCCTTH
T ss_pred E-EeCCCccCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCeEEEEcCCCCCH
Confidence 3 22333345578999999999999987665 789999999 55542 2578999999999 77
Q ss_pred HhHhhhhC-----CCCEEEeCCeeeeEEEEEEcCCc---------------hhHH-------------------------
Q 035699 468 ENFSDYFG-----SAPIFKIPRRRYHVELFYTKAPE---------------ADYI------------------------- 502 (633)
Q Consensus 468 ~~~s~~f~-----~~pii~i~gr~~pv~~~y~~~~~---------------~~yl------------------------- 502 (633)
..|+.|+. .+.++..+++..|+..++.+.+. .++.
T Consensus 237 ~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~ 316 (1010)
T 2xgj_A 237 MEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQ 316 (1010)
T ss_dssp HHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC------------------
T ss_pred HHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhccccccccccccccc
Confidence 77888764 34456667777787776654220 0000
Q ss_pred -----------HHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhh------------------cccCCCCC---
Q 035699 503 -----------EAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRT------------------RGLGTKIA--- 550 (633)
Q Consensus 503 -----------~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~------------------~~l~~~~~--- 550 (633)
...+..++..+.....+++|||++++..|+.++..|.... ..+.....
T Consensus 317 ~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~ 396 (1010)
T 2xgj_A 317 TYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELP 396 (1010)
T ss_dssp ------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCH
T ss_pred ccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcch
Confidence 1112234444444455799999999999999999886520 00000000
Q ss_pred ---------ceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccccccCCCCceeeee
Q 035699 551 ---------ELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVKSYNPKTGMESLLV 621 (633)
Q Consensus 551 ---------~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~~yd~~~g~~~l~~ 621 (633)
...|..+||+|++.+|..++..|+.|..+|||||+++++|||+|++++||+. ...||... .
T Consensus 397 ~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~----~~kfd~~~------~ 466 (1010)
T 2xgj_A 397 QIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTS----VRKWDGQQ------F 466 (1010)
T ss_dssp HHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESC----SEEECSSC------E
T ss_pred hHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeC----CcccCCcC------C
Confidence 1238899999999999999999999999999999999999999999999983 22355432 4
Q ss_pred eeccHHHHhhc
Q 035699 622 NPISKASANQR 632 (633)
Q Consensus 622 ~~iSka~a~QR 632 (633)
.|+|.++..||
T Consensus 467 rp~s~~~y~Qr 477 (1010)
T 2xgj_A 467 RWVSGGEYIQM 477 (1010)
T ss_dssp EECCHHHHHHH
T ss_pred ccCCHHHHhHh
Confidence 56777777776
No 23
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.97 E-value=4e-30 Score=307.46 Aligned_cols=291 Identities=16% Similarity=0.170 Sum_probs=214.2
Q ss_pred cCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccceEe
Q 035699 328 TLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVG 407 (633)
Q Consensus 328 ~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~VG 407 (633)
.++..++|.++++++.++++++|+||||||||+++..++... ...+++++|++|+++||.|++.++...++ |..+|
T Consensus 37 ~f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~-~~~g~~vlvl~PtraLa~Q~~~~l~~~~~---~~~v~ 112 (997)
T 4a4z_A 37 PFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMA-HRNMTKTIYTSPIKALSNQKFRDFKETFD---DVNIG 112 (997)
T ss_dssp SSCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHH-HHTTCEEEEEESCGGGHHHHHHHHHTTC-----CCEE
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHH-HhcCCeEEEEeCCHHHHHHHHHHHHHHcC---CCeEE
Confidence 355899999999999999999999999999998654444432 23445899999999999999999887662 22344
Q ss_pred eeeecccccCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eeccc-----------------CCCccEEEeeccc-CH
Q 035699 408 YSIRFEDCTSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLINY-----------------RPDLKLLISSATL-DA 467 (633)
Q Consensus 408 y~ir~e~~~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~~~-----------------rpdlklil~SAT~-~~ 467 (633)
... +.......++|+|||||+|++++.... .+.++++|| |.+|. .++.++|++|||+ |.
T Consensus 113 ~l~-G~~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT~~n~ 191 (997)
T 4a4z_A 113 LIT-GDVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNT 191 (997)
T ss_dssp EEC-SSCEECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEEEEEECCCTTH
T ss_pred EEe-CCCccCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCEEEEcCCCCCh
Confidence 322 233345668999999999999987766 688999988 54442 3568999999999 78
Q ss_pred HhHhhhhC-----CCCEEEeCCeeeeEEEEEEcCCc-------------hhHH---------------------------
Q 035699 468 ENFSDYFG-----SAPIFKIPRRRYHVELFYTKAPE-------------ADYI--------------------------- 502 (633)
Q Consensus 468 ~~~s~~f~-----~~pii~i~gr~~pv~~~y~~~~~-------------~~yl--------------------------- 502 (633)
..|..|+. ++.++..+++.+|+.+++..... .+|.
T Consensus 192 ~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 271 (997)
T 4a4z_A 192 YEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTA 271 (997)
T ss_dssp HHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC--------------------
T ss_pred HHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccccccccccccccccc
Confidence 88999884 34466778888888766532110 0000
Q ss_pred -------------------------------------------------HHHHHHHHHHHhcCCCCCEEEEcCcHHHHHH
Q 035699 503 -------------------------------------------------EAAIVTALQIHVNEPIGDILVFLTGQDQFET 533 (633)
Q Consensus 503 -------------------------------------------------~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~ 533 (633)
...+..++.++.....+++||||+|+..|+.
T Consensus 272 ~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~ 351 (997)
T 4a4z_A 272 RGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEE 351 (997)
T ss_dssp ---------------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHHHH
Confidence 0113455666666667899999999999999
Q ss_pred HHHHHHHhhc------------------ccCCC------------CCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEe
Q 035699 534 AEEILKQRTR------------------GLGTK------------IAELIICPIYGNLPTELQAKIFEPTPEGARKVVLA 583 (633)
Q Consensus 534 l~~~L~~~~~------------------~l~~~------------~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvA 583 (633)
++..|....- .+... .....|.++||+|++.+|..++..|..|..+||||
T Consensus 352 la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvA 431 (997)
T 4a4z_A 352 YADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFA 431 (997)
T ss_dssp HHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEE
Confidence 9998854100 00000 00124789999999999999999999999999999
Q ss_pred CCccccCCCCCCccEEEeCCCCccccccCCCCceeeeeeeccHHHHhhcC
Q 035699 584 TNIAETSLTIDGIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQRT 633 (633)
Q Consensus 584 TdIAerGLdIp~V~~VID~G~~k~~~yd~~~g~~~l~~~~iSka~a~QR~ 633 (633)
|+++++|||||+ .+||..++++ ||+. -..|+|.++..||+
T Consensus 432 T~~~a~GIDiP~-~~VVi~~~~k---~dg~------~~~~~s~~~y~Qr~ 471 (997)
T 4a4z_A 432 TETFAMGLNLPT-RTVIFSSIRK---HDGN------GLRELTPGEFTQMA 471 (997)
T ss_dssp CTHHHHSCCCCC-SEEEESCSEE---EETT------EEEECCHHHHHHHH
T ss_pred chHhhCCCCCCC-ceEEEecccc---ccCc------cCCCCCHHHHhHHh
Confidence 999999999999 5566666666 5543 23488999988873
No 24
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.96 E-value=4.3e-30 Score=273.51 Aligned_cols=277 Identities=15% Similarity=0.219 Sum_probs=111.2
Q ss_pred ccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccc--cCCeeeecchhHHHHHHHHHHHHHHhCCcccc
Q 035699 327 KTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYT--KQGKIGCTQLRRVAAMSVAARVSQEMGVKLGH 404 (633)
Q Consensus 327 ~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~--~~gkilitqPrR~aA~qva~rva~e~g~~vg~ 404 (633)
.--..+++|.++++++.++++++++||||||||+++..+++..... .++++++++|+++++.|++..+.... ...+.
T Consensus 40 g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~-~~~~~ 118 (394)
T 1fuu_A 40 GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALA-FHMDI 118 (394)
T ss_dssp TCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHT-TTSCC
T ss_pred CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHh-ccCCe
Confidence 3346789999999999999999999999999999988888766443 23389999999999999988776543 22232
Q ss_pred eEeeeeecccc-----cCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eeccc-----------------CCCccEEE
Q 035699 405 EVGYSIRFEDC-----TSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLINY-----------------RPDLKLLI 460 (633)
Q Consensus 405 ~VGy~ir~e~~-----~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~~~-----------------rpdlklil 460 (633)
.++....+... ...+++|+|+|||+|++.+.... .+.++++|| |.+|. .+..++++
T Consensus 119 ~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~ 198 (394)
T 1fuu_A 119 KVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVL 198 (394)
T ss_dssp CEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEE
T ss_pred eEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCceEEE
Confidence 33322221111 01257899999999999987665 688899888 54431 25678999
Q ss_pred eecccCH---HhHhhhhCCCCEEEeCCeee---eEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHH
Q 035699 461 SSATLDA---ENFSDYFGSAPIFKIPRRRY---HVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETA 534 (633)
Q Consensus 461 ~SAT~~~---~~~s~~f~~~pii~i~gr~~---pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l 534 (633)
||||++. +.+..++.++..+.+..... .+..++...+..++. ...+..++.....+++||||++...++.+
T Consensus 199 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~lVf~~~~~~~~~l 275 (394)
T 1fuu_A 199 LSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYK---YECLTDLYDSISVTQAVIFCNTRRKVEEL 275 (394)
T ss_dssp ECSSCCHHHHHHHHHHCCSCEEEEECC-----------------------------------------------------
T ss_pred EEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhH---HHHHHHHHhcCCCCcEEEEECCHHHHHHH
Confidence 9999964 33445555444444433221 122333332222222 22333344444568999999999999999
Q ss_pred HHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccc-cccCC
Q 035699 535 EEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVK-SYNPK 613 (633)
Q Consensus 535 ~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~-~yd~~ 613 (633)
++.|... ++.+..+||+|++.+|..+++.|..|..+|||||+++++|||+|++++||++++|... .|..+
T Consensus 276 ~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr 346 (394)
T 1fuu_A 276 TTKLRND---------KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHR 346 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHc---------CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHH
Confidence 9999774 6789999999999999999999999999999999999999999999999999998753 46655
Q ss_pred CCc
Q 035699 614 TGM 616 (633)
Q Consensus 614 ~g~ 616 (633)
.|.
T Consensus 347 ~GR 349 (394)
T 1fuu_A 347 IGR 349 (394)
T ss_dssp ---
T ss_pred cCc
Confidence 553
No 25
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.96 E-value=1.4e-29 Score=277.22 Aligned_cols=251 Identities=16% Similarity=0.183 Sum_probs=188.3
Q ss_pred cCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccceEeeeeec-ccccCCCCcE
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRF-EDCTSDKTVL 422 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~VGy~ir~-e~~~s~~t~I 422 (633)
.+++++++||||||||+++..+++......+.+++|++||++||.|++..+. | ..|++..+. .....++..+
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~---~----~~v~~~~~~~~~~~~~~~~~ 73 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALR---G----EPIRYMTPAVQSERTGNEIV 73 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT---T----SCEEEC---------CCCSE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhC---C----CeEEEEecCccccCCCCceE
Confidence 3678999999999999998776664434445599999999999999887553 3 345554443 2333456778
Q ss_pred EEeCchHHHHHHhcCCCCCCceeee-eeccc-----------------CCCccEEEeecccCHHhHhhhh-CCCCEEEeC
Q 035699 423 KYMTDGMLLREIVLEPSLESYSVLI-DLINY-----------------RPDLKLLISSATLDAENFSDYF-GSAPIFKIP 483 (633)
Q Consensus 423 iv~TpGrLL~~l~~~~~L~~~s~vI-di~~~-----------------rpdlklil~SAT~~~~~~s~~f-~~~pii~i~ 483 (633)
.++|.|.+.+.+...+.+.++++|| |.+|. +++.++|+||||+... +..+. .+.|++.++
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~-~~~~~~~~~~i~~~~ 152 (431)
T 2v6i_A 74 DFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRVSMGDAGAIFMTATPPGT-TEAFPPSNSPIIDEE 152 (431)
T ss_dssp EEEEHHHHHHHHHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHTTSCEEEEEESSCTTC-CCSSCCCSSCCEEEE
T ss_pred EEEchHHHHHHHhcCccccCCCEEEEeCCccCCccHHHHHHHHHHHhhCCCCcEEEEeCCCCcc-hhhhcCCCCceeecc
Confidence 8999999999888877899999999 55543 3478999999999643 22222 234444332
Q ss_pred CeeeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCH
Q 035699 484 RRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPT 563 (633)
Q Consensus 484 gr~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~ 563 (633)
+. .+..++ ..++.++.. ..|++|||||++..++.+++.|... ++.+.++||+
T Consensus 153 ~~----------~~~~~~-----~~~~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~v~~lhg~--- 204 (431)
T 2v6i_A 153 TR----------IPDKAW-----NSGYEWITE-FDGRTVWFVHSIKQGAEIGTCLQKA---------GKKVLYLNRK--- 204 (431)
T ss_dssp CC----------CCSSCC-----SSCCHHHHS-CSSCEEEECSSHHHHHHHHHHHHHT---------TCCEEEESTT---
T ss_pred cc----------CCHHHH-----HHHHHHHHc-CCCCEEEEeCCHHHHHHHHHHHHHc---------CCeEEEeCCc---
Confidence 21 111111 111222222 3689999999999999999999874 6789999997
Q ss_pred HHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccccccCCCCceeeeeeeccHHHHhhcC
Q 035699 564 ELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQRT 633 (633)
Q Consensus 564 ~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~~yd~~~g~~~l~~~~iSka~a~QR~ 633 (633)
+|..+++.|+.|..+|||||+++++||||| +.+|||+|.++.+.|| .++|......|.|.++..||+
T Consensus 205 -~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d-~~~~vi~~~~p~~~~~~~Qr~ 271 (431)
T 2v6i_A 205 -TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILL-DGRVSMQGPIAITPASAAQRR 271 (431)
T ss_dssp -THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEE-TTEEEEEEEEECCHHHHHHHH
T ss_pred -cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceec-ccceeecccccCCHHHHHHhh
Confidence 577899999999999999999999999999 9999999999999999 788888889999999999984
No 26
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.96 E-value=1.9e-28 Score=282.06 Aligned_cols=282 Identities=14% Similarity=0.121 Sum_probs=166.6
Q ss_pred CCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhcccc----CCeeeecchhHHHHHHHHHHHHHHhCCcccc
Q 035699 329 LPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTK----QGKIGCTQLRRVAAMSVAARVSQEMGVKLGH 404 (633)
Q Consensus 329 LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~----~gkilitqPrR~aA~qva~rva~e~g~~vg~ 404 (633)
...+++|.++++++..++++||++|||||||+++..++++..... +++++|+.||+.|+.|+...+..... ..|.
T Consensus 12 ~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~-~~~~ 90 (696)
T 2ykg_A 12 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFE-RHGY 90 (696)
T ss_dssp -CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTT-TTTC
T ss_pred CCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhc-cCCc
Confidence 456899999999999999999999999999999888877543322 25899999999999999887766541 1222
Q ss_pred eEeeeeeccccc------CCCCcEEEeCchHHHHHHhcCC--CCCCceeee-eeccc-----------------------
Q 035699 405 EVGYSIRFEDCT------SDKTVLKYMTDGMLLREIVLEP--SLESYSVLI-DLINY----------------------- 452 (633)
Q Consensus 405 ~VGy~ir~e~~~------s~~t~Iiv~TpGrLL~~l~~~~--~L~~~s~vI-di~~~----------------------- 452 (633)
.++...+..... ..+++|+|||||+|++.+.... .+.++++|| |.+|.
T Consensus 91 ~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~~~~~~~~ 170 (696)
T 2ykg_A 91 RVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSS 170 (696)
T ss_dssp CEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCC
T ss_pred eEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHHHHhhcccC
Confidence 333222221111 1358999999999999998764 588899988 77665
Q ss_pred CCCccEEEeecccC-------H---HhHhhhh--CCCCEEEeCCee---------eeEEEEEEcCC--------------
Q 035699 453 RPDLKLLISSATLD-------A---ENFSDYF--GSAPIFKIPRRR---------YHVELFYTKAP-------------- 497 (633)
Q Consensus 453 rpdlklil~SAT~~-------~---~~~s~~f--~~~pii~i~gr~---------~pv~~~y~~~~-------------- 497 (633)
.+..++|+||||+. . +.+..++ .+.+++...... .|...+.....
T Consensus 171 ~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs~~~~~l~ 250 (696)
T 2ykg_A 171 GPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLM 250 (696)
T ss_dssp SCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHHHHHHHHH
T ss_pred CCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHHHHHHHHH
Confidence 26789999999996 2 2222221 122222211000 01110000000
Q ss_pred --------------------------------------------------------------------------------
Q 035699 498 -------------------------------------------------------------------------------- 497 (633)
Q Consensus 498 -------------------------------------------------------------------------------- 497 (633)
T Consensus 251 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~~ 330 (696)
T 2ykg_A 251 RDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHAR 330 (696)
T ss_dssp HHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHHhccchhh
Confidence
Q ss_pred ---------------------c--hhH--------------------HHHHHHHHHHHHhc----CCCCCEEEEcCcHHH
Q 035699 498 ---------------------E--ADY--------------------IEAAIVTALQIHVN----EPIGDILVFLTGQDQ 530 (633)
Q Consensus 498 ---------------------~--~~y--------------------l~~~v~~l~~i~~~----~~~g~iLVFl~t~~e 530 (633)
. ..+ ....+..+..++.. .+.+++||||+++..
T Consensus 331 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~ 410 (696)
T 2ykg_A 331 MKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL 410 (696)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHH
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHH
Confidence 0 000 00122223333332 356899999999999
Q ss_pred HHHHHHHHHHhhcccCCCCCceEEEec--------cCCCCHHHHHHHhCCCCC-CCeeEEEeCCccccCCCCCCccEEEe
Q 035699 531 FETAEEILKQRTRGLGTKIAELIICPI--------YGNLPTELQAKIFEPTPE-GARKVVLATNIAETSLTIDGIKYVID 601 (633)
Q Consensus 531 ie~l~~~L~~~~~~l~~~~~~~~v~~l--------Hg~l~~~~R~~i~~~f~~-g~rkVLvATdIAerGLdIp~V~~VID 601 (633)
++.+++.|.... ....+.+..+ ||+|++.+|..+++.|+. |..+|||||+++++|||||+|++||+
T Consensus 411 ~~~l~~~L~~~~-----~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~ 485 (696)
T 2ykg_A 411 VDALKNWIEGNP-----KLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL 485 (696)
T ss_dssp HHHHHHHHHHCT-----TCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCSEEEE
T ss_pred HHHHHHHHHhCC-----CccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEEE
Confidence 999999998741 0122667777 669999999999999998 99999999999999999999999999
Q ss_pred CCCCccc-cccCCCCc
Q 035699 602 PGFAKVK-SYNPKTGM 616 (633)
Q Consensus 602 ~G~~k~~-~yd~~~g~ 616 (633)
+++|... .|-.+.|.
T Consensus 486 ~d~p~s~~~~~Qr~GR 501 (696)
T 2ykg_A 486 YEYVGNVIKMIQTRGR 501 (696)
T ss_dssp ESCC--CCCC------
T ss_pred eCCCCCHHHHHHhhcc
Confidence 9999764 47777664
No 27
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.96 E-value=4.8e-29 Score=283.41 Aligned_cols=271 Identities=14% Similarity=0.109 Sum_probs=194.8
Q ss_pred CChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccceEeee
Q 035699 330 PIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYS 409 (633)
Q Consensus 330 Pi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~VGy~ 409 (633)
...++|.++++++.+++++++++|||||||+++..+++.. ++.++|+.|+++|+.++...+.. +|..++...|..
T Consensus 44 ~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~----~g~~lVisP~~~L~~q~~~~l~~-~gi~~~~l~~~~ 118 (591)
T 2v1x_A 44 KFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS----DGFTLVICPLISLMEDQLMVLKQ-LGISATMLNASS 118 (591)
T ss_dssp SCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS----SSEEEEECSCHHHHHHHHHHHHH-HTCCEEECCSSC
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc----CCcEEEEeCHHHHHHHHHHHHHh-cCCcEEEEeCCC
Confidence 4568899999999999999999999999999877776542 46899999999999999887765 465543222211
Q ss_pred eeccc--------ccCCCCcEEEeCchHHH------HHHhcCCCCCCceeee-eeccc---------------------C
Q 035699 410 IRFED--------CTSDKTVLKYMTDGMLL------REIVLEPSLESYSVLI-DLINY---------------------R 453 (633)
Q Consensus 410 ir~e~--------~~s~~t~Iiv~TpGrLL------~~l~~~~~L~~~s~vI-di~~~---------------------r 453 (633)
...+. .....++|+|+||++|. +.+.....+..+++|| |.+|. .
T Consensus 119 ~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~ 198 (591)
T 2v1x_A 119 SKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQF 198 (591)
T ss_dssp CHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHC
T ss_pred CHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhC
Confidence 11110 02456899999999874 2333323577888888 54442 2
Q ss_pred CCccEEEeecccCHH---hHhhhhCCCC-EEEeCCeeeeEEEEEEcCCchhHHHHHHHHHHHHHhcC-CCCCEEEEcCcH
Q 035699 454 PDLKLLISSATLDAE---NFSDYFGSAP-IFKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNE-PIGDILVFLTGQ 528 (633)
Q Consensus 454 pdlklil~SAT~~~~---~~s~~f~~~p-ii~i~gr~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~-~~g~iLVFl~t~ 528 (633)
|+.++|+||||++.. .+..++.... ++...+... ..++|...+........+..+..++... +.+++||||+|+
T Consensus 199 ~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r-~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr 277 (591)
T 2v1x_A 199 PNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNR-PNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQ 277 (591)
T ss_dssp TTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCC-TTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSH
T ss_pred CCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCC-cccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcH
Confidence 567899999999763 4455664333 322222111 1222322221111223445555555433 567899999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccc
Q 035699 529 DQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVK 608 (633)
Q Consensus 529 ~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~ 608 (633)
..++.+++.|... ++.+.++||+|++.+|..+++.|..|..+|||||+++++|||+|+|++||++++|+..
T Consensus 278 ~~~e~la~~L~~~---------g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~ 348 (591)
T 2v1x_A 278 KDSEQVTVSLQNL---------GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSM 348 (591)
T ss_dssp HHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSH
T ss_pred HHHHHHHHHHHHC---------CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCH
Confidence 9999999999874 7889999999999999999999999999999999999999999999999999999864
Q ss_pred -cccCCCC
Q 035699 609 -SYNPKTG 615 (633)
Q Consensus 609 -~yd~~~g 615 (633)
.|-.+.|
T Consensus 349 ~~y~Qr~G 356 (591)
T 2v1x_A 349 ENYYQESG 356 (591)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 3655443
No 28
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.96 E-value=2.6e-29 Score=271.71 Aligned_cols=266 Identities=14% Similarity=0.082 Sum_probs=188.0
Q ss_pred HHHHHccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCc
Q 035699 322 LQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVK 401 (633)
Q Consensus 322 l~~~r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~ 401 (633)
+.........+++|.++++++.++++++++||||||||+++..+++... ..+++++|++||++||.|++.++.....
T Consensus 13 ~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~-- 89 (414)
T 3oiy_A 13 FFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA-RKGKKSALVFPTVTLVKQTLERLQKLAD-- 89 (414)
T ss_dssp HHHHHHSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH-TTTCCEEEEESSHHHHHHHHHHHHHHCC--
T ss_pred HHHHhcCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh-cCCCEEEEEECCHHHHHHHHHHHHHHcc--
Confidence 3333445677899999999999999999999999999997666655432 3445899999999999999998877433
Q ss_pred ccceEeeeeecccc----------cCCCCcEEEeCchHHHHHHhcCCCCCCceeee-eeccc------------------
Q 035699 402 LGHEVGYSIRFEDC----------TSDKTVLKYMTDGMLLREIVLEPSLESYSVLI-DLINY------------------ 452 (633)
Q Consensus 402 vg~~VGy~ir~e~~----------~s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-di~~~------------------ 452 (633)
.|..++....+... ....++|+|+|||+|++++.. ..+.++++|| |.+|.
T Consensus 90 ~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~ 168 (414)
T 3oiy_A 90 EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIP 168 (414)
T ss_dssp SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCC
T ss_pred CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-hccccccEEEEeChHhhhhccchhhhHHhhcCCc
Confidence 44445533332221 123489999999999887654 4567888888 66541
Q ss_pred -----------C-----------CCccEEEeecccCHH----hHh-hhhCCCCEEEeCCeeeeEEEEEEcCCchhHHHHH
Q 035699 453 -----------R-----------PDLKLLISSATLDAE----NFS-DYFGSAPIFKIPRRRYHVELFYTKAPEADYIEAA 505 (633)
Q Consensus 453 -----------r-----------pdlklil~SAT~~~~----~~s-~~f~~~pii~i~gr~~pv~~~y~~~~~~~yl~~~ 505 (633)
+ ++.++++||||+... .+. .++. ..+.........+...+...+..+.+
T Consensus 169 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l--- 244 (414)
T 3oiy_A 169 EEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-FTVGRLVSVARNITHVRISSRSKEKL--- 244 (414)
T ss_dssp HHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS-CCSSCCCCCCCSEEEEEESSCCHHHH---
T ss_pred HHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc-cCcCccccccccchheeeccCHHHHH---
Confidence 0 678999999995221 222 2332 11111111122355555555433332
Q ss_pred HHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEE-eccCCCCHHHHHHHhCCCCCCCeeEEEe-
Q 035699 506 IVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIIC-PIYGNLPTELQAKIFEPTPEGARKVVLA- 583 (633)
Q Consensus 506 v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~-~lHg~l~~~~R~~i~~~f~~g~rkVLvA- 583 (633)
..++.. .++++||||+++..++.+++.|... ++.+. .+||+ +| + ++.|..|..+||||
T Consensus 245 ----~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~h~~----~r-~-~~~f~~g~~~vLvat 304 (414)
T 3oiy_A 245 ----VELLEI-FRDGILIFAQTEEEGKELYEYLKRF---------KFNVGETWSEF----EK-N-FEDFKVGKINILIGV 304 (414)
T ss_dssp ----HHHHHH-HCSSEEEEESSHHHHHHHHHHHHHT---------TCCEEESSSCH----HH-H-HHHHHTTSCSEEEEE
T ss_pred ----HHHHHH-cCCCEEEEECCHHHHHHHHHHHHHc---------CCceehhhcCc----ch-H-HHHHhCCCCeEEEEe
Confidence 222222 2378999999999999999999884 67787 99995 33 3 88999999999999
Q ss_pred ---CCccccCCCCCC-ccEEEeCCCC--cc-ccccCCCC
Q 035699 584 ---TNIAETSLTIDG-IKYVIDPGFA--KV-KSYNPKTG 615 (633)
Q Consensus 584 ---TdIAerGLdIp~-V~~VID~G~~--k~-~~yd~~~g 615 (633)
|+++++|||||+ |++||++|+| .. ..|.++.|
T Consensus 305 ~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~G 343 (414)
T 3oiy_A 305 QAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASG 343 (414)
T ss_dssp CCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHG
T ss_pred cCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhC
Confidence 999999999999 9999999999 33 34665544
No 29
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.96 E-value=2.1e-28 Score=254.63 Aligned_cols=257 Identities=16% Similarity=0.136 Sum_probs=192.4
Q ss_pred cCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccceEe
Q 035699 328 TLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVG 407 (633)
Q Consensus 328 ~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~VG 407 (633)
--+.+++|.++++++.++++++++||||||||++++.+++.. +.++++++|+++++.|++..+.... ...+..++
T Consensus 14 ~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~----~~~~liv~P~~~L~~q~~~~~~~~~-~~~~~~~~ 88 (337)
T 2z0m_A 14 FKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL----GMKSLVVTPTRELTRQVASHIRDIG-RYMDTKVA 88 (337)
T ss_dssp CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH----TCCEEEECSSHHHHHHHHHHHHHHT-TTSCCCEE
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh----cCCEEEEeCCHHHHHHHHHHHHHHh-hhcCCcEE
Confidence 346789999999999999999999999999999988888764 3489999999999999999876543 22233333
Q ss_pred eeeecccc-----cCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eeccc-----------------CCCccEEEeec
Q 035699 408 YSIRFEDC-----TSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLINY-----------------RPDLKLLISSA 463 (633)
Q Consensus 408 y~ir~e~~-----~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~~~-----------------rpdlklil~SA 463 (633)
........ ....++|+|+|||+|++.+.... .+.++++|| |.+|. .+..++++|||
T Consensus 89 ~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 168 (337)
T 2z0m_A 89 EVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSA 168 (337)
T ss_dssp EECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTCSEEEEEES
T ss_pred EEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHHHhhCCcccEEEEEeC
Confidence 22221111 11348899999999999987655 688889888 55442 23567889999
Q ss_pred ccCH---HhHhhhhCCCCEEEeCCeeeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHH
Q 035699 464 TLDA---ENFSDYFGSAPIFKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQ 540 (633)
Q Consensus 464 T~~~---~~~s~~f~~~pii~i~gr~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~ 540 (633)
|++. +.+..|+.+...+........+...+...+.... ..+..+.....+++||||++.+.++.+++.|.
T Consensus 169 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~- 241 (337)
T 2z0m_A 169 TIPEEIRKVVKDFITNYEEIEACIGLANVEHKFVHVKDDWR------SKVQALRENKDKGVIVFVRTRNRVAKLVRLFD- 241 (337)
T ss_dssp CCCHHHHHHHHHHSCSCEEEECSGGGGGEEEEEEECSSSSH------HHHHHHHTCCCSSEEEECSCHHHHHHHHTTCT-
T ss_pred cCCHHHHHHHHHhcCCceeeecccccCCceEEEEEeChHHH------HHHHHHHhCCCCcEEEEEcCHHHHHHHHHHhh-
Confidence 9965 3455676665555443333344444444332211 12234445667899999999999998887764
Q ss_pred hhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccc
Q 035699 541 RTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVK 608 (633)
Q Consensus 541 ~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~ 608 (633)
.+..+||+|++.+|..+++.|..|..+|||||+++++|||+|++++||+++.|...
T Consensus 242 ------------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~ 297 (337)
T 2z0m_A 242 ------------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDL 297 (337)
T ss_dssp ------------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSH
T ss_pred ------------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCH
Confidence 36789999999999999999999999999999999999999999999999988653
No 30
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.96 E-value=5e-28 Score=268.71 Aligned_cols=288 Identities=14% Similarity=0.114 Sum_probs=172.9
Q ss_pred CCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhcccc----CCeeeecchhHHHHHHHHHHHHHHh---CCc
Q 035699 329 LPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTK----QGKIGCTQLRRVAAMSVAARVSQEM---GVK 401 (633)
Q Consensus 329 LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~----~gkilitqPrR~aA~qva~rva~e~---g~~ 401 (633)
+..+++|.++++++.+++++++++|||||||.++..+++...... +++++|++|+++|+.|++..+...+ +..
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 82 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYN 82 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcE
Confidence 567899999999999999999999999999999888877654332 4489999999999999988776654 444
Q ss_pred ccceEeeeeeccc--ccCCCCcEEEeCchHHHHHHhcCC--CCCCceeee-eecccC-----------------------
Q 035699 402 LGHEVGYSIRFED--CTSDKTVLKYMTDGMLLREIVLEP--SLESYSVLI-DLINYR----------------------- 453 (633)
Q Consensus 402 vg~~VGy~ir~e~--~~s~~t~Iiv~TpGrLL~~l~~~~--~L~~~s~vI-di~~~r----------------------- 453 (633)
++...|....... ....+++|+|+|||+|++++.... .+.++++|| |.+|..
T Consensus 83 ~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (555)
T 3tbk_A 83 IASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRD 162 (555)
T ss_dssp EEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCCS
T ss_pred EEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccccC
Confidence 3322221100000 001247899999999999987765 578889888 555431
Q ss_pred CCccEEEeecccCH----------HhHhhhh--CCCCEEEeCCe---------eeeEEEEEEcC--Cchh----------
Q 035699 454 PDLKLLISSATLDA----------ENFSDYF--GSAPIFKIPRR---------RYHVELFYTKA--PEAD---------- 500 (633)
Q Consensus 454 pdlklil~SAT~~~----------~~~s~~f--~~~pii~i~gr---------~~pv~~~y~~~--~~~~---------- 500 (633)
+..++++||||+.. +.+...+ .+++.+..+.. ..|........ ....
T Consensus 163 ~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
T 3tbk_A 163 PLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLMK 242 (555)
T ss_dssp CCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHHH
T ss_pred CCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHHHH
Confidence 55689999999932 2222111 23334433221 01111111000 0000
Q ss_pred -------------------------------HH-----------------------------------------------
Q 035699 501 -------------------------------YI----------------------------------------------- 502 (633)
Q Consensus 501 -------------------------------yl----------------------------------------------- 502 (633)
|+
T Consensus 243 ~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 322 (555)
T 3tbk_A 243 ETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQM 322 (555)
T ss_dssp HHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 00
Q ss_pred -----------------------------------------------HHHHHHHH----HHHhcCCCCCEEEEcCcHHHH
Q 035699 503 -----------------------------------------------EAAIVTAL----QIHVNEPIGDILVFLTGQDQF 531 (633)
Q Consensus 503 -----------------------------------------------~~~v~~l~----~i~~~~~~g~iLVFl~t~~ei 531 (633)
..++..+. ..+...+.+++||||+++..+
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~ 402 (555)
T 3tbk_A 323 TDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALV 402 (555)
T ss_dssp HHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHH
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHH
Confidence 00111122 222234568999999999999
Q ss_pred HHHHHHHHHhhcc--cC-CCCCceEEEeccCCCCHHHHHHHhCCCCC-CCeeEEEeCCccccCCCCCCccEEEeCCCCcc
Q 035699 532 ETAEEILKQRTRG--LG-TKIAELIICPIYGNLPTELQAKIFEPTPE-GARKVVLATNIAETSLTIDGIKYVIDPGFAKV 607 (633)
Q Consensus 532 e~l~~~L~~~~~~--l~-~~~~~~~v~~lHg~l~~~~R~~i~~~f~~-g~rkVLvATdIAerGLdIp~V~~VID~G~~k~ 607 (633)
+.++..|...... +. ....+.....+||+|++.+|..+++.|.. |..+|||||+++++|||||+|++||++++|..
T Consensus 403 ~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s 482 (555)
T 3tbk_A 403 DALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGN 482 (555)
T ss_dssp HHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESCCSS
T ss_pred HHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCCC
Confidence 9999999874110 00 00113345567789999999999999999 99999999999999999999999999999977
Q ss_pred c-cccCCCCc
Q 035699 608 K-SYNPKTGM 616 (633)
Q Consensus 608 ~-~yd~~~g~ 616 (633)
+ .|..+.|.
T Consensus 483 ~~~~~Qr~GR 492 (555)
T 3tbk_A 483 VIKMIQTRGR 492 (555)
T ss_dssp CCCEECSSCC
T ss_pred HHHHHHhcCc
Confidence 5 48888776
No 31
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.96 E-value=4.2e-29 Score=274.32 Aligned_cols=255 Identities=16% Similarity=0.145 Sum_probs=180.4
Q ss_pred HHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccceEeeeeecc-cccCCC
Q 035699 341 AVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFE-DCTSDK 419 (633)
Q Consensus 341 al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~VGy~ir~e-~~~s~~ 419 (633)
++.++++++++|+||||||++++.+++......+.+++|++|||+||.|++..+. +. .+++..... ....++
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~---~~----~v~~~~~~~~~v~Tp~ 76 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFH---GL----DVKFHTQAFSAHGSGR 76 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT---TS----CEEEESSCCCCCCCSS
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHh---cC----CeEEecccceeccCCc
Confidence 4678899999999999999998777776544444589999999999999988664 22 244443322 122344
Q ss_pred CcEEEeCchHHHHHHhcCCCCCCceeee-eecccC-----------------CCccEEEeecccCHHhHhhhh-CCCCEE
Q 035699 420 TVLKYMTDGMLLREIVLEPSLESYSVLI-DLINYR-----------------PDLKLLISSATLDAENFSDYF-GSAPIF 480 (633)
Q Consensus 420 t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-di~~~r-----------------pdlklil~SAT~~~~~~s~~f-~~~pii 480 (633)
..+-+++.|.+...+.....+.++++|| |.+|.. ++.++++||||+..... .+. ...++.
T Consensus 77 ~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~-~~~~~~~~~~ 155 (440)
T 1yks_A 77 EVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARANESATILMTATPPGTSD-EFPHSNGEIE 155 (440)
T ss_dssp CCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCC-SSCCCSSCEE
T ss_pred cceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHHHHHhccCCceEEEEeCCCCchhh-hhhhcCCCee
Confidence 4566777787777777777899999999 666553 57899999999954322 221 122322
Q ss_pred EeCCeeeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCC
Q 035699 481 KIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGN 560 (633)
Q Consensus 481 ~i~gr~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~ 560 (633)
.+. ...+.... ...+..+. . ..+++|||||+++.++.+++.|... ++.+..+||
T Consensus 156 ~~~----------~~~~~~~~-~~~~~~l~----~-~~~~~lVF~~s~~~a~~l~~~L~~~---------~~~v~~lhg- 209 (440)
T 1yks_A 156 DVQ----------TDIPSEPW-NTGHDWIL----A-DKRPTAWFLPSIRAANVMAASLRKA---------GKSVVVLNR- 209 (440)
T ss_dssp EEE----------CCCCSSCC-SSSCHHHH----H-CCSCEEEECSCHHHHHHHHHHHHHT---------TCCEEECCS-
T ss_pred Eee----------eccChHHH-HHHHHHHH----h-cCCCEEEEeCCHHHHHHHHHHHHHc---------CCCEEEecc-
Confidence 221 11111110 00111111 1 2589999999999999999999884 678999999
Q ss_pred CCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccccc-cCCCCceeeeeeeccHHHHhhcC
Q 035699 561 LPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVKSY-NPKTGMESLLVNPISKASANQRT 633 (633)
Q Consensus 561 l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~~y-d~~~g~~~l~~~~iSka~a~QR~ 633 (633)
.+|..+++.|+.|..+||||||++++||||| |++|||+|+++.+.| ++..+|......|.|.++..||+
T Consensus 210 ---~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~ 279 (440)
T 1yks_A 210 ---KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRR 279 (440)
T ss_dssp ---SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHH
T ss_pred ---hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhc
Confidence 4578899999999999999999999999999 999999999998886 56667888888999999999984
No 32
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.1e-29 Score=283.40 Aligned_cols=265 Identities=14% Similarity=0.209 Sum_probs=179.0
Q ss_pred CChHHHHHHHHHHHcC--CeEEEeccCCChhhchHHHHHHHhccccC--CeeeecchhHHHHHHHHHHHHHHhCC-cccc
Q 035699 330 PIYPFREELLQAVSEY--PVLVIVGETGSGKTTQIPQYLYEAGYTKQ--GKIGCTQLRRVAAMSVAARVSQEMGV-KLGH 404 (633)
Q Consensus 330 Pi~~~q~~il~al~~~--~~vIi~a~TGSGKTt~lp~~Lle~~~~~~--gkilitqPrR~aA~qva~rva~e~g~-~vg~ 404 (633)
..+++|.++++++.++ ++++++|+||||||+++.++++....... ++++|++|+++|+.|++.++....+. .+..
T Consensus 141 ~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~ 220 (508)
T 3fho_A 141 XXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKT 220 (508)
T ss_dssp ECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCE
T ss_pred CcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeE
Confidence 3567788888888887 89999999999999998888887644332 38999999999999999988776532 2222
Q ss_pred eEeeeeecccccCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eecc------------------cCCCccEEEeecc
Q 035699 405 EVGYSIRFEDCTSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLIN------------------YRPDLKLLISSAT 464 (633)
Q Consensus 405 ~VGy~ir~e~~~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~~------------------~rpdlklil~SAT 464 (633)
.+++...........++|+|+|||+|++.+.... .+.++++|| |.+| ..++.++|+||||
T Consensus 221 ~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT 300 (508)
T 3fho_A 221 AFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSAT 300 (508)
T ss_dssp EC----------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESC
T ss_pred EEEeCCcccccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCC
Confidence 2222222222233468999999999999987766 688999988 5443 2346789999999
Q ss_pred cC--HHhHhhhh-CCCCEEEeCCeeee---EEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHH
Q 035699 465 LD--AENFSDYF-GSAPIFKIPRRRYH---VELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEIL 538 (633)
Q Consensus 465 ~~--~~~~s~~f-~~~pii~i~gr~~p---v~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L 538 (633)
+. .+.+...+ .+...+.+....++ +...+....... .....+..++.....+++||||+++..++.++..|
T Consensus 301 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L 377 (508)
T 3fho_A 301 FSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEE---HKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRM 377 (508)
T ss_dssp CSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CH---HHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHH
T ss_pred CCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchH---HHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHH
Confidence 95 45555544 44444444433322 223333332222 22334555555556789999999999999999999
Q ss_pred HHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCc
Q 035699 539 KQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAK 606 (633)
Q Consensus 539 ~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k 606 (633)
... ++.+..+||+|++.+|..+++.|+.|..+|||||+++++|||||+|++||++++|.
T Consensus 378 ~~~---------~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~ 436 (508)
T 3fho_A 378 TAD---------GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPL 436 (508)
T ss_dssp TTT---------TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----C
T ss_pred HhC---------CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCC
Confidence 763 67899999999999999999999999999999999999999999999999999884
No 33
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.95 E-value=3.5e-28 Score=270.67 Aligned_cols=288 Identities=13% Similarity=0.085 Sum_probs=153.8
Q ss_pred cCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhcccc----CCeeeecchhHHHHHHHHHHHHHHh---CC
Q 035699 328 TLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTK----QGKIGCTQLRRVAAMSVAARVSQEM---GV 400 (633)
Q Consensus 328 ~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~----~gkilitqPrR~aA~qva~rva~e~---g~ 400 (633)
.+..+++|.++++++.+++++++++|||||||.++..+++...... +++++|++|+++|+.|++..+...+ +.
T Consensus 5 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 84 (556)
T 4a2p_A 5 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 84 (556)
T ss_dssp ---CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCc
Confidence 4567899999999999999999999999999999888876653332 4489999999999999998776654 44
Q ss_pred cccceEeeeeeccc--ccCCCCcEEEeCchHHHHHHhcCC--CCCCceeee-eeccc----------------------C
Q 035699 401 KLGHEVGYSIRFED--CTSDKTVLKYMTDGMLLREIVLEP--SLESYSVLI-DLINY----------------------R 453 (633)
Q Consensus 401 ~vg~~VGy~ir~e~--~~s~~t~Iiv~TpGrLL~~l~~~~--~L~~~s~vI-di~~~----------------------r 453 (633)
.++...|....... ....+++|+|+|||+|++++.... .+.++++|| |.+|. .
T Consensus 85 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~ 164 (556)
T 4a2p_A 85 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSAS 164 (556)
T ss_dssp CEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHCC--
T ss_pred eEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhcccC
Confidence 44333331111000 011357899999999999987764 588899888 65543 2
Q ss_pred CCccEEEeecccCH----------Hh---HhhhhCCCCEEEeCCe---------eeeEEEEEEcC--Cch----------
Q 035699 454 PDLKLLISSATLDA----------EN---FSDYFGSAPIFKIPRR---------RYHVELFYTKA--PEA---------- 499 (633)
Q Consensus 454 pdlklil~SAT~~~----------~~---~s~~f~~~pii~i~gr---------~~pv~~~y~~~--~~~---------- 499 (633)
+..++|+||||+.. +. +...+ ++..+..+.. ..|........ ...
T Consensus 165 ~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (556)
T 4a2p_A 165 QLPQILGLTASVGVGNAKNIEETIEHICSLCSYL-DIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLM 243 (556)
T ss_dssp -CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHH-TCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHHHH
T ss_pred CCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhc-CCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHHHH
Confidence 45789999999921 11 11222 2222222210 00111110000 000
Q ss_pred ---------------------------h---HH-----------------------------------------------
Q 035699 500 ---------------------------D---YI----------------------------------------------- 502 (633)
Q Consensus 500 ---------------------------~---yl----------------------------------------------- 502 (633)
. ++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 323 (556)
T 4a2p_A 244 SETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARI 323 (556)
T ss_dssp HHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 0 00
Q ss_pred -----------------------------------------------HHHHHHHHHHH----hcCCCCCEEEEcCcHHHH
Q 035699 503 -----------------------------------------------EAAIVTALQIH----VNEPIGDILVFLTGQDQF 531 (633)
Q Consensus 503 -----------------------------------------------~~~v~~l~~i~----~~~~~g~iLVFl~t~~ei 531 (633)
..++..+..++ ...+.+++|||++++..+
T Consensus 324 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~ 403 (556)
T 4a2p_A 324 IDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALV 403 (556)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHH
Confidence 00111122222 224568999999999999
Q ss_pred HHHHHHHHHhhcc--cCC-CCCceEEEeccCCCCHHHHHHHhCCCCC-CCeeEEEeCCccccCCCCCCccEEEeCCCCcc
Q 035699 532 ETAEEILKQRTRG--LGT-KIAELIICPIYGNLPTELQAKIFEPTPE-GARKVVLATNIAETSLTIDGIKYVIDPGFAKV 607 (633)
Q Consensus 532 e~l~~~L~~~~~~--l~~-~~~~~~v~~lHg~l~~~~R~~i~~~f~~-g~rkVLvATdIAerGLdIp~V~~VID~G~~k~ 607 (633)
+.+++.|...... +.. ...+.....+||+|++.+|..+++.|+. |..+|||||+++++|||||+|++||++++|..
T Consensus 404 ~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s 483 (556)
T 4a2p_A 404 SALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGN 483 (556)
T ss_dssp HHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETCCSC
T ss_pred HHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCCC
Confidence 9999999764100 000 0124455667899999999999999999 99999999999999999999999999999977
Q ss_pred c-cccCCCCc
Q 035699 608 K-SYNPKTGM 616 (633)
Q Consensus 608 ~-~yd~~~g~ 616 (633)
. .|..+.|.
T Consensus 484 ~~~~~Qr~GR 493 (556)
T 4a2p_A 484 VTKMIQVRGR 493 (556)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHhcCC
Confidence 4 47777776
No 34
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.95 E-value=3e-28 Score=280.24 Aligned_cols=255 Identities=16% Similarity=0.225 Sum_probs=190.6
Q ss_pred HHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccceEeeeeeccc-ccCCC
Q 035699 341 AVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFED-CTSDK 419 (633)
Q Consensus 341 al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~VGy~ir~e~-~~s~~ 419 (633)
++.++++++++|+||||||++++.+++......+.+++|++|||+||.|++..+. +. .+++.+.... ...++
T Consensus 237 ~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~---~~----~i~~~~~~l~~v~tp~ 309 (673)
T 2wv9_A 237 MLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALR---GL----PVRYLTPAVQREHSGN 309 (673)
T ss_dssp GGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT---TS----CCEECCC---CCCCSC
T ss_pred HHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHh---cC----CeeeecccccccCCHH
Confidence 3448999999999999999998777776544445589999999999999987664 22 2344333221 33455
Q ss_pred CcEEEeCchHHHHHHhcCCCCCCceeee-eecccC-----------------CCccEEEeecccCHHhHhhhh-CCCCEE
Q 035699 420 TVLKYMTDGMLLREIVLEPSLESYSVLI-DLINYR-----------------PDLKLLISSATLDAENFSDYF-GSAPIF 480 (633)
Q Consensus 420 t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-di~~~r-----------------pdlklil~SAT~~~~~~s~~f-~~~pii 480 (633)
..+.+++.|.+.+.+...+.+.++++|| |.+|.. ++.++|+||||+.... ..+. .+.|+.
T Consensus 310 ~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i-~~~~~~~~~i~ 388 (673)
T 2wv9_A 310 EIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRVEAGEAAAIFMTATPPGTS-DPFPDTNSPVH 388 (673)
T ss_dssp CCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCC-CSSCCCSSCEE
T ss_pred HHHHHHHhhhhHHHHhcccccccceEEEEeCCcccCccHHHHHHHHHHhccccCCcEEEEcCCCChhh-hhhcccCCceE
Confidence 6678899999998888888899999999 666544 5789999999995432 1222 234444
Q ss_pred EeCCeeeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCC
Q 035699 481 KIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGN 560 (633)
Q Consensus 481 ~i~gr~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~ 560 (633)
.+... .+...+ . .++..+. ...+++|||||+++.++.+++.|... ++.+..+||.
T Consensus 389 ~v~~~----------~~~~~~-~----~~l~~l~-~~~~~~lVF~~s~~~~e~la~~L~~~---------g~~v~~lHg~ 443 (673)
T 2wv9_A 389 DVSSE----------IPDRAW-S----SGFEWIT-DYAGKTVWFVASVKMSNEIAQCLQRA---------GKRVIQLNRK 443 (673)
T ss_dssp EEECC----------CCSSCC-S----SCCHHHH-SCCSCEEEECSSHHHHHHHHHHHHTT---------TCCEEEECSS
T ss_pred EEeee----------cCHHHH-H----HHHHHHH-hCCCCEEEEECCHHHHHHHHHHHHhC---------CCeEEEeChH
Confidence 33221 111111 0 0111122 24689999999999999999999874 6889999994
Q ss_pred CCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCcccc--ccCCCCceeeeeeeccHHHHhhcC
Q 035699 561 LPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVKS--YNPKTGMESLLVNPISKASANQRT 633 (633)
Q Consensus 561 l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~~--yd~~~g~~~l~~~~iSka~a~QR~ 633 (633)
+|..+++.|+.|..+||||||++++||||| |++|||+|.+..+. ||+..++..+-..|+|.++..||+
T Consensus 444 ----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~ 513 (673)
T 2wv9_A 444 ----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRR 513 (673)
T ss_dssp ----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHH
T ss_pred ----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHh
Confidence 788999999999999999999999999999 99999999887754 777777777778999999999984
No 35
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.95 E-value=2.6e-28 Score=280.92 Aligned_cols=287 Identities=15% Similarity=0.140 Sum_probs=185.0
Q ss_pred HccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccc-----cCCeeeecchhHHHHHHH-HHHHHHHhC
Q 035699 326 RKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYT-----KQGKIGCTQLRRVAAMSV-AARVSQEMG 399 (633)
Q Consensus 326 r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~-----~~gkilitqPrR~aA~qv-a~rva~e~g 399 (633)
+..++.+++|.++++++.++++++|++|||||||.++..+++..... .+++++|++|+++|+.|+ +..+...++
T Consensus 3 ~~~~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~ 82 (699)
T 4gl2_A 3 GAMLQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 82 (699)
T ss_dssp ----CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHT
T ss_pred CCCCCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcC
Confidence 45688999999999999999999999999999999888777653221 125899999999999999 888887776
Q ss_pred --CcccceEeeeeecc--cccCCCCcEEEeCchHHHHHHhcC-------CCCCCceeee-eecccC--------------
Q 035699 400 --VKLGHEVGYSIRFE--DCTSDKTVLKYMTDGMLLREIVLE-------PSLESYSVLI-DLINYR-------------- 453 (633)
Q Consensus 400 --~~vg~~VGy~ir~e--~~~s~~t~Iiv~TpGrLL~~l~~~-------~~L~~~s~vI-di~~~r-------------- 453 (633)
..++...|...... ......++|+|+|||+|++.+.+. ..+.++++|| |.+|..
T Consensus 83 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l 162 (699)
T 4gl2_A 83 KWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYL 162 (699)
T ss_dssp TTSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHH
T ss_pred cCceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHH
Confidence 34433333221111 011246899999999999987432 2578888888 666521
Q ss_pred -----------------CCccEEEeecccCH----------Hh---HhhhhCCCCEEEeCCe--------eeeEEEEEEc
Q 035699 454 -----------------PDLKLLISSATLDA----------EN---FSDYFGSAPIFKIPRR--------RYHVELFYTK 495 (633)
Q Consensus 454 -----------------pdlklil~SAT~~~----------~~---~s~~f~~~pii~i~gr--------~~pv~~~y~~ 495 (633)
|..++|++|||+.. +. +...++...+...... ..|...+...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~ 242 (699)
T 4gl2_A 163 MQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIA 242 (699)
T ss_dssp HHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEE
T ss_pred HhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEc
Confidence 56789999999953 11 1122222121111110 0111111100
Q ss_pred C-----Cchh----------------------------H-----------------------------------------
Q 035699 496 A-----PEAD----------------------------Y----------------------------------------- 501 (633)
Q Consensus 496 ~-----~~~~----------------------------y----------------------------------------- 501 (633)
. +... |
T Consensus 243 ~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 322 (699)
T 4gl2_A 243 DATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDA 322 (699)
T ss_dssp C-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000 0
Q ss_pred -----------------------------------HH-------------------------HHHHHHHHHHhcCC-CCC
Q 035699 502 -----------------------------------IE-------------------------AAIVTALQIHVNEP-IGD 520 (633)
Q Consensus 502 -----------------------------------l~-------------------------~~v~~l~~i~~~~~-~g~ 520 (633)
+. ..+..+...+...+ .++
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~ 402 (699)
T 4gl2_A 323 YTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESAR 402 (699)
T ss_dssp HHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 00 00011111122233 689
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCC--------CCHHHHHHHhCCCCCCCeeEEEeCCccccCCC
Q 035699 521 ILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGN--------LPTELQAKIFEPTPEGARKVVLATNIAETSLT 592 (633)
Q Consensus 521 iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~--------l~~~~R~~i~~~f~~g~rkVLvATdIAerGLd 592 (633)
+|||++++..++.+++.|.... .+ ...++.+..+||+ |++.+|..+++.|+.|..+|||||+++++|||
T Consensus 403 ~IVF~~s~~~~~~l~~~L~~~~-~l--~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 403 GIIFTKTRQSAYALSQWITENE-KF--AEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp EEEECSCHHHHHHHHHHHHSSC-SC--C-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred EEEEECcHHHHHHHHHHHHhCc-cc--cccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 9999999999999999998741 11 1126889999999 99999999999999999999999999999999
Q ss_pred CCCccEEEeCCCCccc-cccCCCC
Q 035699 593 IDGIKYVIDPGFAKVK-SYNPKTG 615 (633)
Q Consensus 593 Ip~V~~VID~G~~k~~-~yd~~~g 615 (633)
||+|++||++++|... .|..+.|
T Consensus 480 ip~v~~VI~~d~p~s~~~~~Qr~G 503 (699)
T 4gl2_A 480 IKECNIVIRYGLVTNEIAMVQARG 503 (699)
T ss_dssp CCSCCCCEEESCCCCHHHHHHHHT
T ss_pred cccCCEEEEeCCCCCHHHHHHHcC
Confidence 9999999999998753 3555444
No 36
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.95 E-value=2e-27 Score=266.34 Aligned_cols=267 Identities=15% Similarity=0.176 Sum_probs=191.4
Q ss_pred CChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccceEeee
Q 035699 330 PIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYS 409 (633)
Q Consensus 330 Pi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~VGy~ 409 (633)
...++|.++++++.+++++++++|||||||+++..+++.. ++.++|+.|+++|+.++..++.. +|...+...|..
T Consensus 25 ~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~----~g~~lvi~P~~aL~~q~~~~l~~-~gi~~~~l~~~~ 99 (523)
T 1oyw_A 25 QFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL----NGLTVVVSPLISLMKDQVDQLQA-NGVAAACLNSTQ 99 (523)
T ss_dssp SCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS----SSEEEEECSCHHHHHHHHHHHHH-TTCCEEEECTTS
T ss_pred CCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh----CCCEEEECChHHHHHHHHHHHHH-cCCcEEEEeCCC
Confidence 4478899999999999999999999999999776666533 35899999999999999887754 555433221211
Q ss_pred eecc------cccCCCCcEEEeCchHHHHHH-hcCCCCCCceeee-eecc---------------------cCCCccEEE
Q 035699 410 IRFE------DCTSDKTVLKYMTDGMLLREI-VLEPSLESYSVLI-DLIN---------------------YRPDLKLLI 460 (633)
Q Consensus 410 ir~e------~~~s~~t~Iiv~TpGrLL~~l-~~~~~L~~~s~vI-di~~---------------------~rpdlklil 460 (633)
...+ ......++|+|+||++|+... .......++++|| |.+| ..|+.++++
T Consensus 100 ~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~ 179 (523)
T 1oyw_A 100 TREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMA 179 (523)
T ss_dssp CHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEE
T ss_pred CHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCCCCCEEE
Confidence 1100 111345899999999996321 1111346777777 4443 235678999
Q ss_pred eecccCHH---hHhhhhC-CCCEEEeCCeeeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHH
Q 035699 461 SSATLDAE---NFSDYFG-SAPIFKIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEE 536 (633)
Q Consensus 461 ~SAT~~~~---~~s~~f~-~~pii~i~gr~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~ 536 (633)
+|||++.. .+..++. ..|.+.+.+...| .+.|...+..+.+ ..++.++...+.+++||||+|+..++.+++
T Consensus 180 lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~-~l~~~v~~~~~~~----~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~ 254 (523)
T 1oyw_A 180 LTATADDTTRQDIVRLLGLNDPLIQISSFDRP-NIRYMLMEKFKPL----DQLMRYVQEQRGKSGIIYCNSRAKVEDTAA 254 (523)
T ss_dssp EESCCCHHHHHHHHHHHTCCSCEEEECCCCCT-TEEEEEEECSSHH----HHHHHHHHHTTTCCEEEECSSHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCC-ceEEEEEeCCCHH----HHHHHHHHhcCCCcEEEEeCCHHHHHHHHH
Confidence 99999654 3444443 4555555443322 1222222222222 334444555566799999999999999999
Q ss_pred HHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccc-cccCCCC
Q 035699 537 ILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVK-SYNPKTG 615 (633)
Q Consensus 537 ~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~-~yd~~~g 615 (633)
.|... ++.+.++||+|++.+|..+++.|..|..+|||||+++++|||+|+|++||++|+|+.. .|..+.|
T Consensus 255 ~L~~~---------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~G 325 (523)
T 1oyw_A 255 RLQSK---------GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETG 325 (523)
T ss_dssp HHHHT---------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHT
T ss_pred HHHHC---------CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhc
Confidence 99884 6789999999999999999999999999999999999999999999999999999864 3544433
No 37
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.94 E-value=2e-27 Score=286.54 Aligned_cols=266 Identities=13% Similarity=0.062 Sum_probs=190.3
Q ss_pred ccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccceE
Q 035699 327 KTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEV 406 (633)
Q Consensus 327 ~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~V 406 (633)
-.+..+++|..+++.+.++++++++|+||||||+++..+++.. ...+++++|+.|||+||.|++.++.. ++ ..|..+
T Consensus 75 ~gf~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~-~~~~~~~Lil~PtreLa~Q~~~~l~~-l~-~~~i~v 151 (1104)
T 4ddu_A 75 FGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWL-ARKGKKSALVFPTVTLVKQTLERLQK-LA-DEKVKI 151 (1104)
T ss_dssp SSSCCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHH-HTTTCCEEEEESSHHHHHHHHHHHHT-TS-CTTSCE
T ss_pred cCCCCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHH-HhcCCeEEEEechHHHHHHHHHHHHH-hh-CCCCeE
Confidence 3457789999999999999999999999999999665555544 24445899999999999999998877 55 445556
Q ss_pred eeeeecccc---------c-CCCCcEEEeCchHHHHHHhcCCCCCCceeee-eeccc-----------------------
Q 035699 407 GYSIRFEDC---------T-SDKTVLKYMTDGMLLREIVLEPSLESYSVLI-DLINY----------------------- 452 (633)
Q Consensus 407 Gy~ir~e~~---------~-s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-di~~~----------------------- 452 (633)
+...++... . ...++|+|+|||+|++++.. ..+.++++|| |.+|.
T Consensus 152 ~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~ 230 (1104)
T 4ddu_A 152 FGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIR 230 (1104)
T ss_dssp EEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHH
Confidence 554443322 1 23489999999999888654 4577888888 55531
Q ss_pred ------C-----------CCccEEEeecccCHH----hHhhhhCCCCEEEeCCeeeeEEEEEEcCCchhHHHHHHHHHHH
Q 035699 453 ------R-----------PDLKLLISSATLDAE----NFSDYFGSAPIFKIPRRRYHVELFYTKAPEADYIEAAIVTALQ 511 (633)
Q Consensus 453 ------r-----------pdlklil~SAT~~~~----~~s~~f~~~pii~i~gr~~pv~~~y~~~~~~~yl~~~v~~l~~ 511 (633)
. ++.++++||||+... .+...+....+.........+...+........+ ..
T Consensus 231 ~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v~~~~~~~~~i~~~~~~~~k~~~L-------~~ 303 (1104)
T 4ddu_A 231 KAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRISSRSKEKL-------VE 303 (1104)
T ss_dssp HHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCCCBCCCCCCCEEEEEESCCCHHHH-------HH
T ss_pred HHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEeccCCCCcCCceeEEEecCHHHHH-------HH
Confidence 0 567999999995332 2222222211111111223355666655433332 22
Q ss_pred HHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEE-eccCCCCHHHHHHHhCCCCCCCeeEEEe----CCc
Q 035699 512 IHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIIC-PIYGNLPTELQAKIFEPTPEGARKVVLA----TNI 586 (633)
Q Consensus 512 i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~-~lHg~l~~~~R~~i~~~f~~g~rkVLvA----TdI 586 (633)
++.. .++++||||+++..++.++..|... ++.+. .+||. |.+ ++.|..|..+|||| ||+
T Consensus 304 ll~~-~~~~~LVF~~s~~~a~~l~~~L~~~---------g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~Tdv 367 (1104)
T 4ddu_A 304 LLEI-FRDGILIFAQTEEEGKELYEYLKRF---------KFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGK 367 (1104)
T ss_dssp HHHH-HCSSEEEEESSSHHHHHHHHHHHHT---------TCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHH
T ss_pred HHHh-cCCCEEEEECcHHHHHHHHHHHHhC---------CCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCe
Confidence 2222 2389999999999999999999884 67887 99993 455 99999999999999 999
Q ss_pred cccCCCCCC-ccEEEeCCCCc-----cccccCCCCceee
Q 035699 587 AETSLTIDG-IKYVIDPGFAK-----VKSYNPKTGMESL 619 (633)
Q Consensus 587 AerGLdIp~-V~~VID~G~~k-----~~~yd~~~g~~~l 619 (633)
+++|||||+ |++|||+|+|+ +..++|.+++..+
T Consensus 368 larGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l 406 (1104)
T 4ddu_A 368 LTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARV 406 (1104)
T ss_dssp HCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHH
T ss_pred eEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHH
Confidence 999999999 99999999999 3345555544443
No 38
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.94 E-value=9.2e-27 Score=273.14 Aligned_cols=288 Identities=13% Similarity=0.081 Sum_probs=160.5
Q ss_pred cCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhcccc----CCeeeecchhHHHHHHHHHHHHHHh---CC
Q 035699 328 TLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTK----QGKIGCTQLRRVAAMSVAARVSQEM---GV 400 (633)
Q Consensus 328 ~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~----~gkilitqPrR~aA~qva~rva~e~---g~ 400 (633)
.....++|.++++++.+++++|++++||||||.++..+++...... +++++|++|+++|+.|+...+...+ +.
T Consensus 246 ~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~ 325 (797)
T 4a2q_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 325 (797)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCc
Confidence 4567899999999999999999999999999999888877653332 4589999999999999988776654 45
Q ss_pred cccceEeeeeeccc--ccCCCCcEEEeCchHHHHHHhcCC--CCCCceeee-eeccc----------------------C
Q 035699 401 KLGHEVGYSIRFED--CTSDKTVLKYMTDGMLLREIVLEP--SLESYSVLI-DLINY----------------------R 453 (633)
Q Consensus 401 ~vg~~VGy~ir~e~--~~s~~t~Iiv~TpGrLL~~l~~~~--~L~~~s~vI-di~~~----------------------r 453 (633)
.++..+|....... ....+++|+|+|||+|++++.... .+.++++|| |.+|. .
T Consensus 326 ~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~~~~~ 405 (797)
T 4a2q_A 326 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSAS 405 (797)
T ss_dssp CEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHHTTCC
T ss_pred eEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHhhccCC
Confidence 44433332111000 112367899999999999987654 578889888 55542 3
Q ss_pred CCccEEEeecccCH----------HhHh---hhhCCCCEEEeCCe---------eeeEEEEEEcC--C------------
Q 035699 454 PDLKLLISSATLDA----------ENFS---DYFGSAPIFKIPRR---------RYHVELFYTKA--P------------ 497 (633)
Q Consensus 454 pdlklil~SAT~~~----------~~~s---~~f~~~pii~i~gr---------~~pv~~~y~~~--~------------ 497 (633)
+..++|+||||+.. +.+. ..+ ++..+..... ..|...+.... .
T Consensus 406 ~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L-~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 484 (797)
T 4a2q_A 406 QLPQILGLTASVGVGNAKNIEETIEHICSLCSYL-DIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLM 484 (797)
T ss_dssp CCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHH-TCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHH
T ss_pred CCCeEEEEcCCccccccccHHHHHHHHHHHHHhc-CCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHHHHH
Confidence 45789999999931 1222 222 2222222110 00110000000 0
Q ss_pred -------------------------ch---hHH-----------------------------------------------
Q 035699 498 -------------------------EA---DYI----------------------------------------------- 502 (633)
Q Consensus 498 -------------------------~~---~yl----------------------------------------------- 502 (633)
.. .|+
T Consensus 485 ~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 564 (797)
T 4a2q_A 485 SETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARI 564 (797)
T ss_dssp HHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhccccH
Confidence 00 000
Q ss_pred -----------------------------------------------HHHHHHHHHHH----hcCCCCCEEEEcCcHHHH
Q 035699 503 -----------------------------------------------EAAIVTALQIH----VNEPIGDILVFLTGQDQF 531 (633)
Q Consensus 503 -----------------------------------------------~~~v~~l~~i~----~~~~~g~iLVFl~t~~ei 531 (633)
..++..+..++ ...+.+++|||++++..+
T Consensus 565 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~ 644 (797)
T 4a2q_A 565 IDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALV 644 (797)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHH
T ss_pred HHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHH
Confidence 00111122222 225568999999999999
Q ss_pred HHHHHHHHHhhcc--cCC-CCCceEEEeccCCCCHHHHHHHhCCCCC-CCeeEEEeCCccccCCCCCCccEEEeCCCCcc
Q 035699 532 ETAEEILKQRTRG--LGT-KIAELIICPIYGNLPTELQAKIFEPTPE-GARKVVLATNIAETSLTIDGIKYVIDPGFAKV 607 (633)
Q Consensus 532 e~l~~~L~~~~~~--l~~-~~~~~~v~~lHg~l~~~~R~~i~~~f~~-g~rkVLvATdIAerGLdIp~V~~VID~G~~k~ 607 (633)
+.++..|...... +.. ...+.....+||+|++.+|..+++.|+. |..+|||||+++++|||||+|++||++++|..
T Consensus 645 ~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s 724 (797)
T 4a2q_A 645 SALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGN 724 (797)
T ss_dssp HHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEESCCSC
T ss_pred HHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCCCCC
Confidence 9999999873100 000 0124456778999999999999999999 99999999999999999999999999999976
Q ss_pred c-cccCCCCc
Q 035699 608 K-SYNPKTGM 616 (633)
Q Consensus 608 ~-~yd~~~g~ 616 (633)
+ .|..+.|.
T Consensus 725 ~~~~iQr~GR 734 (797)
T 4a2q_A 725 VTKMIQVRGR 734 (797)
T ss_dssp HHHHHTC---
T ss_pred HHHHHHhcCC
Confidence 4 47777775
No 39
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.94 E-value=1.5e-27 Score=287.00 Aligned_cols=250 Identities=14% Similarity=0.090 Sum_probs=173.0
Q ss_pred ccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHh---CCccc
Q 035699 327 KTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEM---GVKLG 403 (633)
Q Consensus 327 ~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~---g~~vg 403 (633)
..++. ++|.++++++.++++++++||||||||+ +.++++......+++++|++|||+||.|++..+.... +...+
T Consensus 54 ~g~~p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~ 131 (1054)
T 1gku_B 54 VGEPR-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTE 131 (1054)
T ss_dssp TCSCC-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGG
T ss_pred cCCCH-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCcc
Confidence 34555 9999999999999999999999999997 7777666545555699999999999999998776554 33111
Q ss_pred ceEeeeeecc---------cccCCCCcEEEeCchHHHHHHhcCCCCCCceeee-eeccc---------------------
Q 035699 404 HEVGYSIRFE---------DCTSDKTVLKYMTDGMLLREIVLEPSLESYSVLI-DLINY--------------------- 452 (633)
Q Consensus 404 ~~VGy~ir~e---------~~~s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-di~~~--------------------- 452 (633)
..++...++. ..... ++|+|||||+|++++.. |.++++|| |.+|.
T Consensus 132 ~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~---L~~l~~lViDEah~~l~~~~~~~~i~~~lgf~~~~ 207 (1054)
T 1gku_B 132 NLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE---LGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDL 207 (1054)
T ss_dssp GSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT---SCCCSEEEESCHHHHHTSTHHHHHHHHHTTEEEET
T ss_pred ceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH---hccCCEEEEeChhhhhhccccHHHHHHHhCcchhh
Confidence 1333222211 11123 89999999999998755 77898888 55432
Q ss_pred -----CCCccEEEeecccCH-HhHh-hhhCCCCEEEeCCee---eeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEE
Q 035699 453 -----RPDLKLLISSATLDA-ENFS-DYFGSAPIFKIPRRR---YHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDIL 522 (633)
Q Consensus 453 -----rpdlklil~SAT~~~-~~~s-~~f~~~pii~i~gr~---~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iL 522 (633)
.+..++++||||+.. ..+. .++.+...+.+.+.. ..+..++........ +..++... ++++|
T Consensus 208 ~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~~~k~~~-------L~~ll~~~-~~~~L 279 (1054)
T 1gku_B 208 KTKSWVGEARGCLMVSTATAKKGKKAELFRQLLNFDIGSSRITVRNVEDVAVNDESIST-------LSSILEKL-GTGGI 279 (1054)
T ss_dssp TTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHCCCCSCCEECCCCEEEEEESCCCTTT-------THHHHTTS-CSCEE
T ss_pred hhhhcccCCceEEEEecCCCchhHHHHHhhcceEEEccCcccCcCCceEEEechhHHHH-------HHHHHhhc-CCCEE
Confidence 234678999999844 2222 233222222332222 234555554332222 23333332 57899
Q ss_pred EEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEe----CCccccCCCCCCc-c
Q 035699 523 VFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLA----TNIAETSLTIDGI-K 597 (633)
Q Consensus 523 VFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvA----TdIAerGLdIp~V-~ 597 (633)
|||+|+..++.+++.|.. . +.+.++||+|. .+++.|+.|..+|||| ||++++|||||+| +
T Consensus 280 VF~~t~~~a~~l~~~L~~---------~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~ 344 (1054)
T 1gku_B 280 IYARTGEEAEEIYESLKN---------K-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIR 344 (1054)
T ss_dssp EEESSHHHHHHHHHTTTT---------S-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCTTTCC
T ss_pred EEEcCHHHHHHHHHHHhh---------c-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccCCccc
Confidence 999999999999998865 1 77999999984 5677888999999999 9999999999995 9
Q ss_pred EEEeCCCC
Q 035699 598 YVIDPGFA 605 (633)
Q Consensus 598 ~VID~G~~ 605 (633)
+|||+|+|
T Consensus 345 ~VI~~~~P 352 (1054)
T 1gku_B 345 FAVFVGCP 352 (1054)
T ss_dssp EEEEESCC
T ss_pred EEEEeCCC
Confidence 99999999
No 40
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.94 E-value=4.7e-26 Score=284.05 Aligned_cols=272 Identities=13% Similarity=0.081 Sum_probs=198.6
Q ss_pred ChHHHHHHHHHHH-cCCeEEEeccCCChhhchHHHHHHHhcccc-CCeeeecchhHHHHHHHHHHHHHHhCCcccceEee
Q 035699 331 IYPFREELLQAVS-EYPVLVIVGETGSGKTTQIPQYLYEAGYTK-QGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGY 408 (633)
Q Consensus 331 i~~~q~~il~al~-~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~-~gkilitqPrR~aA~qva~rva~e~g~~vg~~VGy 408 (633)
..++|.++++.+. ++++++|+||||||||+++.++++...... ++++++++|+|+||.+++..+...++..+|..||.
T Consensus 927 fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ 1006 (1724)
T 4f92_B 927 FNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVL 1006 (1724)
T ss_dssp CCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEE
T ss_pred CCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEE
Confidence 4678888888885 568899999999999999888887765443 34899999999999999999988888777777775
Q ss_pred eeeccc---ccCCCCcEEEeCchHHHHHHhcCC---CCCCceeee-eecc-----------------------cCCCccE
Q 035699 409 SIRFED---CTSDKTVLKYMTDGMLLREIVLEP---SLESYSVLI-DLIN-----------------------YRPDLKL 458 (633)
Q Consensus 409 ~ir~e~---~~s~~t~Iiv~TpGrLL~~l~~~~---~L~~~s~vI-di~~-----------------------~rpdlkl 458 (633)
..+... ....+++|+|||||++..++.+.. .+.++++|| |.+| ..+++|+
T Consensus 1007 ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~~~~~~ri 1086 (1724)
T 4f92_B 1007 LTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRI 1086 (1724)
T ss_dssp CCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEE
T ss_pred EECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHHHHHHHHHHhhcCCCceE
Confidence 443221 112457899999999876664432 478899988 4443 1246899
Q ss_pred EEeeccc-CHHhHhhhhCC--CCEEEeCC--eeeeEEEEEEcCCchhHH---HHHHHHHHHH-HhcCCCCCEEEEcCcHH
Q 035699 459 LISSATL-DAENFSDYFGS--APIFKIPR--RRYHVELFYTKAPEADYI---EAAIVTALQI-HVNEPIGDILVFLTGQD 529 (633)
Q Consensus 459 il~SAT~-~~~~~s~~f~~--~pii~i~g--r~~pv~~~y~~~~~~~yl---~~~v~~l~~i-~~~~~~g~iLVFl~t~~ 529 (633)
|+||||+ |++.|++|++. ..++.+.. |..|+..+....+..++. ......+... ....+.+++||||+++.
T Consensus 1087 I~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~ 1166 (1724)
T 4f92_B 1087 VALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRK 1166 (1724)
T ss_dssp EEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHH
T ss_pred EEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHH
Confidence 9999999 89999999964 34555543 445555554433322221 1111222222 22345689999999999
Q ss_pred HHHHHHHHHHHhhcccCCCC-------------------------CceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeC
Q 035699 530 QFETAEEILKQRTRGLGTKI-------------------------AELIICPIYGNLPTELQAKIFEPTPEGARKVVLAT 584 (633)
Q Consensus 530 eie~l~~~L~~~~~~l~~~~-------------------------~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvAT 584 (633)
.|+.++..|...+..-.... -...|..+||+|++.+|..+++.|+.|..+|||||
T Consensus 1167 ~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT 1246 (1724)
T 4f92_B 1167 QTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVAS 1246 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEE
T ss_pred HHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEC
Confidence 99999988765432111000 02348899999999999999999999999999999
Q ss_pred CccccCCCCCCccEEEeC
Q 035699 585 NIAETSLTIDGIKYVIDP 602 (633)
Q Consensus 585 dIAerGLdIp~V~~VID~ 602 (633)
+++++|||+|.+.+||..
T Consensus 1247 ~tlA~GVnlPa~~VVI~~ 1264 (1724)
T 4f92_B 1247 RSLCWGMNVAAHLVIIMD 1264 (1724)
T ss_dssp GGGSSSCCCCBSEEEEEC
T ss_pred hHHHcCCCCCccEEEEec
Confidence 999999999999999964
No 41
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.94 E-value=1.6e-26 Score=249.89 Aligned_cols=270 Identities=17% Similarity=0.132 Sum_probs=188.5
Q ss_pred cCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCC---cccc
Q 035699 328 TLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGV---KLGH 404 (633)
Q Consensus 328 ~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~---~vg~ 404 (633)
.++.+++|.+++.++..+ ++++.++||+|||++++.++.......+++++|++|++.++.|.+..+...++. .++.
T Consensus 7 ~~~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~ 85 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVA 85 (494)
T ss_dssp HHCCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEE
T ss_pred CCCccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEE
Confidence 467899999999999999 899999999999999888877653334559999999999999999999888765 3322
Q ss_pred eEeeeeeccc-ccCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eecccC-----------------CCccEEEeecc
Q 035699 405 EVGYSIRFED-CTSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLINYR-----------------PDLKLLISSAT 464 (633)
Q Consensus 405 ~VGy~ir~e~-~~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~~~r-----------------pdlklil~SAT 464 (633)
..|....... .....++|+|+||++|.+.+.... .+.++++|| |.+|.. +..++++||||
T Consensus 86 ~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaT 165 (494)
T 1wp9_A 86 LTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTAS 165 (494)
T ss_dssp ECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESC
T ss_pred eeCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEecC
Confidence 2221111000 001257899999999999987665 688899888 776643 35679999999
Q ss_pred cC--HHhHhhhh---CCCCEEEe-CCe------eeeEEEEE--EcCCc--------------------------------
Q 035699 465 LD--AENFSDYF---GSAPIFKI-PRR------RYHVELFY--TKAPE-------------------------------- 498 (633)
Q Consensus 465 ~~--~~~~s~~f---~~~pii~i-~gr------~~pv~~~y--~~~~~-------------------------------- 498 (633)
+. .+.+..++ ...++... ... ..+....+ ...+.
T Consensus 166 p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (494)
T 1wp9_A 166 PGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPD 245 (494)
T ss_dssp SCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCTT
T ss_pred CCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 94 44444332 21111110 000 00111111 01000
Q ss_pred ----------------------------------------------------hhHHH-----------------------
Q 035699 499 ----------------------------------------------------ADYIE----------------------- 503 (633)
Q Consensus 499 ----------------------------------------------------~~yl~----------------------- 503 (633)
.+|+.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 325 (494)
T 1wp9_A 246 IPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRM 325 (494)
T ss_dssp SCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHHH
T ss_pred cchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHHH
Confidence 00000
Q ss_pred -----------------HHHHHHHHHHhc----CCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccC---
Q 035699 504 -----------------AAIVTALQIHVN----EPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYG--- 559 (633)
Q Consensus 504 -----------------~~v~~l~~i~~~----~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg--- 559 (633)
.++..+..++.. .+.+++|||+++...++.+++.|... ++.+..+||
T Consensus 326 ~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~~~ 396 (494)
T 1wp9_A 326 KKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD---------GIKAKRFVGQAS 396 (494)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHT---------TCCEEEECCSSC
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHc---------CCCcEEEecccc
Confidence 011222333322 46789999999999999999999884 678999999
Q ss_pred -----CCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCcc
Q 035699 560 -----NLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKV 607 (633)
Q Consensus 560 -----~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~ 607 (633)
+|++.+|..+++.|..|..+|||||+++++|||+|++++||+++.|..
T Consensus 397 ~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~ 449 (494)
T 1wp9_A 397 KENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPS 449 (494)
T ss_dssp C-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHH
T ss_pred ccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCC
Confidence 999999999999999999999999999999999999999999998864
No 42
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.93 E-value=2.4e-26 Score=264.16 Aligned_cols=251 Identities=19% Similarity=0.158 Sum_probs=166.2
Q ss_pred HHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccceEeeeeecccccCCCC
Q 035699 341 AVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSDKT 420 (633)
Q Consensus 341 al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~VGy~ir~e~~~s~~t 420 (633)
...++++++++||||||||+.+++.+... +..++++|||+||.|++.++.. +|..++..+|.............
T Consensus 151 r~l~rk~vlv~apTGSGKT~~al~~l~~~-----~~gl~l~PtR~LA~Qi~~~l~~-~g~~v~lltG~~~~iv~TpGr~~ 224 (677)
T 3rc3_A 151 RAMQRKIIFHSGPTNSGKTYHAIQKYFSA-----KSGVYCGPLKLLAHEIFEKSNA-AGVPCDLVTGEERVTVQPNGKQA 224 (677)
T ss_dssp HTSCCEEEEEECCTTSSHHHHHHHHHHHS-----SSEEEEESSHHHHHHHHHHHHH-TTCCEEEECSSCEECCSTTCCCC
T ss_pred HhcCCCEEEEEcCCCCCHHHHHHHHHHhc-----CCeEEEeCHHHHHHHHHHHHHh-cCCcEEEEECCeeEEecCCCccc
Confidence 34578899999999999999766666654 2447889999999999998755 56655443332111110001124
Q ss_pred cEEEeCchHHHHHHhcCCCCCCceeee-eecccC------------------CCccEEEeecccC-HHhHhhhhCCCCEE
Q 035699 421 VLKYMTDGMLLREIVLEPSLESYSVLI-DLINYR------------------PDLKLLISSATLD-AENFSDYFGSAPIF 480 (633)
Q Consensus 421 ~Iiv~TpGrLL~~l~~~~~L~~~s~vI-di~~~r------------------pdlklil~SAT~~-~~~~s~~f~~~pii 480 (633)
.++++|++++. .+..++++| |.+|.. ++++++++|||.+ ...+....+....+
T Consensus 225 ~il~~T~e~~~-------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~~i~~l~~~~~~~~~v 297 (677)
T 3rc3_A 225 SHVSCTVEMCS-------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEV 297 (677)
T ss_dssp SEEEEEGGGCC-------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHHHHHHHHHHHTCCEEE
T ss_pred ceeEecHhHhh-------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHHHHHHHHHhcCCceEE
Confidence 56666665432 457788888 555421 4568999999973 34444444322222
Q ss_pred EeCCeeeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCC
Q 035699 481 KIPRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGN 560 (633)
Q Consensus 481 ~i~gr~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~ 560 (633)
....+..|... ..... ..+....+|+ +|||+++.+|+.+++.|... ++.+.++||+
T Consensus 298 ~~~~r~~~l~~--~~~~l------------~~l~~~~~g~-iIf~~s~~~ie~la~~L~~~---------g~~v~~lHG~ 353 (677)
T 3rc3_A 298 RDYKRLTPISV--LDHAL------------ESLDNLRPGD-CIVCFSKNDIYSVSRQIEIR---------GLESAVIYGS 353 (677)
T ss_dssp EECCCSSCEEE--CSSCC------------CSGGGCCTTE-EEECSSHHHHHHHHHHHHHT---------TCCCEEECTT
T ss_pred EEeeecchHHH--HHHHH------------HHHHhcCCCC-EEEEcCHHHHHHHHHHHHhc---------CCCeeeeecc
Confidence 21112222211 11110 0111223444 67788999999999999874 6889999999
Q ss_pred CCHHHHHHHhCCCCC--CCeeEEEeCCccccCCCCCCccEEEeCCCCccccccCCCCceeeeeeeccHHHHhhcC
Q 035699 561 LPTELQAKIFEPTPE--GARKVVLATNIAETSLTIDGIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQRT 633 (633)
Q Consensus 561 l~~~~R~~i~~~f~~--g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~~yd~~~g~~~l~~~~iSka~a~QR~ 633 (633)
|++.+|..+++.|.+ |..+||||||++++|||| +|++|||+|+++. .||+..+. ..+|+|.+++.||+
T Consensus 354 L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~-~~~~~G~~---~~~p~s~~~~~QR~ 423 (677)
T 3rc3_A 354 LPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKP-SINEKGER---ELEPITTSQALQIA 423 (677)
T ss_dssp SCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC---------------CBCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcccc-ccccCCcc---ccccCCHHHHHHHh
Confidence 999999999999987 899999999999999999 8999999999998 89998544 26799999999984
No 43
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.93 E-value=2.2e-25 Score=265.67 Aligned_cols=290 Identities=13% Similarity=0.091 Sum_probs=161.4
Q ss_pred HccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhcccc----CCeeeecchhHHHHHHHHHHHHHHh---
Q 035699 326 RKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTK----QGKIGCTQLRRVAAMSVAARVSQEM--- 398 (633)
Q Consensus 326 r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~----~gkilitqPrR~aA~qva~rva~e~--- 398 (633)
.......++|.++++++.++++++++++||||||.++..+++...... +++++|+.|+++|+.|++..+...+
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~ 323 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ 323 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 345678899999999999999999999999999999888887664332 4489999999999999988776654
Q ss_pred CCcccceEeeeeeccc--ccCCCCcEEEeCchHHHHHHhcCC--CCCCceeee-eeccc---------------------
Q 035699 399 GVKLGHEVGYSIRFED--CTSDKTVLKYMTDGMLLREIVLEP--SLESYSVLI-DLINY--------------------- 452 (633)
Q Consensus 399 g~~vg~~VGy~ir~e~--~~s~~t~Iiv~TpGrLL~~l~~~~--~L~~~s~vI-di~~~--------------------- 452 (633)
+..++...|....... ....+++|+|+|||+|++++.... .+.++++|| |.+|.
T Consensus 324 ~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~~~ 403 (936)
T 4a2w_A 324 GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNS 403 (936)
T ss_dssp TCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTT
T ss_pred CceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHhhcc
Confidence 4544333331110000 011357899999999999987654 578889888 65542
Q ss_pred -CCCccEEEeecccCH----------HhHh---hhhCCCCEEEeCCe---------eeeEEEEEEcC-------------
Q 035699 453 -RPDLKLLISSATLDA----------ENFS---DYFGSAPIFKIPRR---------RYHVELFYTKA------------- 496 (633)
Q Consensus 453 -rpdlklil~SAT~~~----------~~~s---~~f~~~pii~i~gr---------~~pv~~~y~~~------------- 496 (633)
.+..++++||||+.. +.+. ..+ ++..+..... ..|...+....
T Consensus 404 ~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L-~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~ 482 (936)
T 4a2w_A 404 ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYL-DIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISN 482 (936)
T ss_dssp CSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHH-TCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHH
T ss_pred CCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhc-CCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHHH
Confidence 344679999999931 1111 111 2222221110 00100000000
Q ss_pred -----------------------------------------------Cch------------------------------
Q 035699 497 -----------------------------------------------PEA------------------------------ 499 (633)
Q Consensus 497 -----------------------------------------------~~~------------------------------ 499 (633)
+..
T Consensus 483 l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~ 562 (936)
T 4a2w_A 483 LMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDA 562 (936)
T ss_dssp HHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 000
Q ss_pred ------hHH----------------------------------------HHHHHHHHHHHhc----CCCCCEEEEcCcHH
Q 035699 500 ------DYI----------------------------------------EAAIVTALQIHVN----EPIGDILVFLTGQD 529 (633)
Q Consensus 500 ------~yl----------------------------------------~~~v~~l~~i~~~----~~~g~iLVFl~t~~ 529 (633)
.++ ..++..+..++.. .+.+++|||++++.
T Consensus 563 ~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~ 642 (936)
T 4a2w_A 563 RIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRA 642 (936)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHH
T ss_pred hHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHH
Confidence 000 0011122223322 34589999999999
Q ss_pred HHHHHHHHHHHhhcc--cCC-CCCceEEEeccCCCCHHHHHHHhCCCCC-CCeeEEEeCCccccCCCCCCccEEEeCCCC
Q 035699 530 QFETAEEILKQRTRG--LGT-KIAELIICPIYGNLPTELQAKIFEPTPE-GARKVVLATNIAETSLTIDGIKYVIDPGFA 605 (633)
Q Consensus 530 eie~l~~~L~~~~~~--l~~-~~~~~~v~~lHg~l~~~~R~~i~~~f~~-g~rkVLvATdIAerGLdIp~V~~VID~G~~ 605 (633)
.++.+++.|...... +.. -..+..+..+||+|++.+|..+++.|+. |..+|||||+++++|||||+|++||++++|
T Consensus 643 ~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p 722 (936)
T 4a2w_A 643 LVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYS 722 (936)
T ss_dssp HHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEESCC
T ss_pred HHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCCC
Confidence 999999999874100 000 0124456677999999999999999999 999999999999999999999999999998
Q ss_pred ccc-cccCCCCc
Q 035699 606 KVK-SYNPKTGM 616 (633)
Q Consensus 606 k~~-~yd~~~g~ 616 (633)
... .|..+.|.
T Consensus 723 ~s~~~~iQr~GR 734 (936)
T 4a2w_A 723 GNVTKMIQVRGR 734 (936)
T ss_dssp SCSHHHHCC---
T ss_pred CCHHHHHHhcCC
Confidence 764 47777765
No 44
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.93 E-value=1.5e-25 Score=279.45 Aligned_cols=293 Identities=15% Similarity=0.140 Sum_probs=203.1
Q ss_pred ChHHHHHHHHH-HHcCCeEEEeccCCChhhchHHHHHHHhccc----------cCCeeeecchhHHHHHHHHHHHHHHhC
Q 035699 331 IYPFREELLQA-VSEYPVLVIVGETGSGKTTQIPQYLYEAGYT----------KQGKIGCTQLRRVAAMSVAARVSQEMG 399 (633)
Q Consensus 331 i~~~q~~il~a-l~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~----------~~gkilitqPrR~aA~qva~rva~e~g 399 (633)
..++|..+++. +.++++++|+||||||||.++..+++..... .+++++++.|+|+||.++...+...++
T Consensus 80 ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~ 159 (1724)
T 4f92_B 80 LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLA 159 (1724)
T ss_dssp CCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHHh
Confidence 45677777775 5578899999999999999877776654321 233899999999999999988877663
Q ss_pred CcccceEeeeeeccccc---CCCCcEEEeCchHHHHHHhcCC---CCCCceeee-eecc---------------------
Q 035699 400 VKLGHEVGYSIRFEDCT---SDKTVLKYMTDGMLLREIVLEP---SLESYSVLI-DLIN--------------------- 451 (633)
Q Consensus 400 ~~vg~~VGy~ir~e~~~---s~~t~Iiv~TpGrLL~~l~~~~---~L~~~s~vI-di~~--------------------- 451 (633)
. +|..||...+..... ...++|+||||+++.-++.+.. .++.+++|| |.+|
T Consensus 160 ~-~gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~~ 238 (1724)
T 4f92_B 160 T-YGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNI 238 (1724)
T ss_dssp T-TTCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHHHHHHHHH
T ss_pred h-CCCEEEEEECCCCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCccHHHHHHHHHHHHHHH
Confidence 2 344454222211111 1358999999999744433322 378899888 4443
Q ss_pred --cCCCccEEEeeccc-CHHhHhhhhCCCC---EEEeCC--eeeeEEEEEEcCCchhHHH--HHHH-HHHHHHhc-CCCC
Q 035699 452 --YRPDLKLLISSATL-DAENFSDYFGSAP---IFKIPR--RRYHVELFYTKAPEADYIE--AAIV-TALQIHVN-EPIG 519 (633)
Q Consensus 452 --~rpdlklil~SAT~-~~~~~s~~f~~~p---ii~i~g--r~~pv~~~y~~~~~~~yl~--~~v~-~l~~i~~~-~~~g 519 (633)
..+++|+|++|||+ |++.+++|++..+ ++.+.. |..|+..++...+...... ..+. .+...... ...+
T Consensus 239 ~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 318 (1724)
T 4f92_B 239 EMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKN 318 (1724)
T ss_dssp HHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSC
T ss_pred HhCCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCC
Confidence 13578999999999 8899999997543 344443 4445555554333222211 1111 22222222 3357
Q ss_pred CEEEEcCcHHHHHHHHHHHHHhhcccCC--------------------C--------CCceEEEeccCCCCHHHHHHHhC
Q 035699 520 DILVFLTGQDQFETAEEILKQRTRGLGT--------------------K--------IAELIICPIYGNLPTELQAKIFE 571 (633)
Q Consensus 520 ~iLVFl~t~~eie~l~~~L~~~~~~l~~--------------------~--------~~~~~v~~lHg~l~~~~R~~i~~ 571 (633)
++||||+|+..++.++..|.+.+..-+. . .-...|..+||+|++.+|..+.+
T Consensus 319 ~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~ 398 (1724)
T 4f92_B 319 QVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVED 398 (1724)
T ss_dssp CEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHH
T ss_pred cEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHH
Confidence 8999999999999999988765321100 0 01223788999999999999999
Q ss_pred CCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccccccCCCCceeeeeeeccHHHHhhc
Q 035699 572 PTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVKSYNPKTGMESLLVNPISKASANQR 632 (633)
Q Consensus 572 ~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~~yd~~~g~~~l~~~~iSka~a~QR 632 (633)
.|+.|..+|||||++++.|||+|.+++||.. ...|||..|.. .|+|.++..||
T Consensus 399 ~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~----~~~~~~~~~~~----~~ls~~~~~Qm 451 (1724)
T 4f92_B 399 LFADKHIQVLVSTATLAWGVNLPAHTVIIKG----TQVYSPEKGRW----TELGALDILQM 451 (1724)
T ss_dssp HHHTTCCCEEEECHHHHHHSCCCBSEEEEEC----CEEEETTTTEE----EECCHHHHHHH
T ss_pred HHHCCCCeEEEEcchhHhhCCCCCceEEEeC----CEEecCcCCCc----ccCCHHHHHHh
Confidence 9999999999999999999999999999964 34588887743 45788887776
No 45
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.92 E-value=2.9e-25 Score=256.24 Aligned_cols=273 Identities=15% Similarity=0.115 Sum_probs=178.4
Q ss_pred cCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHH---HhCCcccc
Q 035699 328 TLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQ---EMGVKLGH 404 (633)
Q Consensus 328 ~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~---e~g~~vg~ 404 (633)
.+-.+++|...++.+..++ |+.++||||||+++.+|++...+. +..++|+.|||+||.+++..+.. .+|..+|.
T Consensus 81 G~~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~-g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~ 157 (844)
T 1tf5_A 81 GMFPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT-GKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGL 157 (844)
T ss_dssp SCCCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT-SSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEE
Confidence 3466788888888888888 889999999999988887643232 33799999999999998775543 44554443
Q ss_pred eEeeeeecccccCCCCcEEEeCchHH-HHHHhcC-------CCCCCceeee-e----ec---------------------
Q 035699 405 EVGYSIRFEDCTSDKTVLKYMTDGML-LREIVLE-------PSLESYSVLI-D----LI--------------------- 450 (633)
Q Consensus 405 ~VGy~ir~e~~~s~~t~Iiv~TpGrL-L~~l~~~-------~~L~~~s~vI-d----i~--------------------- 450 (633)
.+|-.-........+++|+|+|||+| ++++..+ ..+..+.++| | ++
T Consensus 158 i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~ 237 (844)
T 1tf5_A 158 NLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLY 237 (844)
T ss_dssp CCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHH
T ss_pred EeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhHH
Confidence 33211000111123589999999999 6665432 2567888877 1 11
Q ss_pred -------ccCC----------CccEE-----------------EeecccCH--HhH-----hh-hhC-CCC-E------E
Q 035699 451 -------NYRP----------DLKLL-----------------ISSATLDA--ENF-----SD-YFG-SAP-I------F 480 (633)
Q Consensus 451 -------~~rp----------dlkli-----------------l~SAT~~~--~~~-----s~-~f~-~~p-i------i 480 (633)
...| +.+++ +||||+.. ..+ +. +|. +.. + +
T Consensus 238 ~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ 317 (844)
T 1tf5_A 238 VQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVV 317 (844)
T ss_dssp HHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEE
T ss_pred HHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeE
Confidence 1111 34555 88999731 111 11 221 111 1 1
Q ss_pred Ee--------CCeeee------------------------E--------------------------------EEE----
Q 035699 481 KI--------PRRRYH------------------------V--------------------------------ELF---- 492 (633)
Q Consensus 481 ~i--------~gr~~p------------------------v--------------------------------~~~---- 492 (633)
.| +|++++ + ++.
T Consensus 318 ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPt 397 (844)
T 1tf5_A 318 IVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPT 397 (844)
T ss_dssp EBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECCC
T ss_pred EeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEecC
Confidence 01 111110 0 000
Q ss_pred -----------EEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCC
Q 035699 493 -----------YTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNL 561 (633)
Q Consensus 493 -----------y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l 561 (633)
+...+....+.+.+..+...+. ...++||||+|++.++.++..|... ++.+..|||++
T Consensus 398 n~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~--~~~pvLVft~s~~~se~Ls~~L~~~---------gi~~~vLhg~~ 466 (844)
T 1tf5_A 398 NRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYM--TGQPVLVGTVAVETSELISKLLKNK---------GIPHQVLNAKN 466 (844)
T ss_dssp SSCCCCEECCCEEESSHHHHHHHHHHHHHHHHH--HTCCEEEEESCHHHHHHHHHHHHTT---------TCCCEEECSSC
T ss_pred CCCcccccCCcEEEeCHHHHHHHHHHHHHHHHh--cCCcEEEEECCHHHHHHHHHHHHHC---------CCCEEEeeCCc
Confidence 1111223334433333433332 2357999999999999999999874 78899999999
Q ss_pred CHHHHHHHhCCCCCCCeeEEEeCCccccCCCCC--------CccEEEeCCCCccc-cccCCCCc
Q 035699 562 PTELQAKIFEPTPEGARKVVLATNIAETSLTID--------GIKYVIDPGFAKVK-SYNPKTGM 616 (633)
Q Consensus 562 ~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp--------~V~~VID~G~~k~~-~yd~~~g~ 616 (633)
.+.++..+...+.+| .|+||||+|+||+||+ |+.||||+.+|... .|+++.|.
T Consensus 467 ~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GR 528 (844)
T 1tf5_A 467 HEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGR 528 (844)
T ss_dssp HHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTT
T ss_pred cHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCc
Confidence 999998888888777 5999999999999999 89999999999875 48887665
No 46
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.92 E-value=7.3e-26 Score=263.82 Aligned_cols=262 Identities=14% Similarity=0.155 Sum_probs=184.6
Q ss_pred cCCChHHHHHHHHHHHcC------CeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCc
Q 035699 328 TLPIYPFREELLQAVSEY------PVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVK 401 (633)
Q Consensus 328 ~LPi~~~q~~il~al~~~------~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~ 401 (633)
.+..+++|.++++.+.++ .+++++|+||||||.++..+++... ..+.+++++.||++||.|++..+...++ .
T Consensus 366 pf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l-~~g~qvlvlaPtr~La~Q~~~~l~~~~~-~ 443 (780)
T 1gm5_A 366 PFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNY-EAGFQTAFMVPTSILAIQHYRRTVESFS-K 443 (780)
T ss_dssp SSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHH-HHTSCEEEECSCHHHHHHHHHHHHHHHT-C
T ss_pred CCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEEEeCcHHHHHHHHHHHHHHhh-h
Confidence 345788999989888765 4789999999999999888887652 3445899999999999999998887763 2
Q ss_pred ccceEeeeeeccc----------ccCCCCcEEEeCchHHHHHHhcCCCCCCceeee-eeccc------------CCCccE
Q 035699 402 LGHEVGYSIRFED----------CTSDKTVLKYMTDGMLLREIVLEPSLESYSVLI-DLINY------------RPDLKL 458 (633)
Q Consensus 402 vg~~VGy~ir~e~----------~~s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-di~~~------------rpdlkl 458 (633)
.|..|+...+... ..+..++|+||||++|.+ ...+.++++|| |.+|. .++.++
T Consensus 444 ~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~~~~~~l~lVVIDEaHr~g~~qr~~l~~~~~~~~v 519 (780)
T 1gm5_A 444 FNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE----DVHFKNLGLVIIDEQHRFGVKQREALMNKGKMVDT 519 (780)
T ss_dssp SSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH----CCCCSCCCEEEEESCCCC-----CCCCSSSSCCCE
T ss_pred cCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh----hhhccCCceEEecccchhhHHHHHHHHHhCCCCCE
Confidence 2333443222211 112358999999997754 45688999988 65543 245789
Q ss_pred EEeecccCHHhHhh-hhCCCCEEEe---CCeeeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHH----
Q 035699 459 LISSATLDAENFSD-YFGSAPIFKI---PRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQ---- 530 (633)
Q Consensus 459 il~SAT~~~~~~s~-~f~~~pii~i---~gr~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~e---- 530 (633)
++||||+....+.. ++++..+..+ |....|+..++......+ ..+..+...+ ...++++||||+.++
T Consensus 520 L~mSATp~p~tl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~---~l~~~i~~~l--~~g~qvlVf~~~ie~se~l 594 (780)
T 1gm5_A 520 LVMSATPIPRSMALAFYGDLDVTVIDEMPPGRKEVQTMLVPMDRVN---EVYEFVRQEV--MRGGQAFIVYPLIEESDKL 594 (780)
T ss_dssp EEEESSCCCHHHHHHHTCCSSCEEECCCCSSCCCCEECCCCSSTHH---HHHHHHHHHT--TTSCCBCCBCCCC------
T ss_pred EEEeCCCCHHHHHHHHhCCcceeeeeccCCCCcceEEEEeccchHH---HHHHHHHHHH--hcCCcEEEEecchhhhhhh
Confidence 99999997766653 4444333333 333456665555433222 2222222222 235789999997654
Q ss_pred ----HHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCc
Q 035699 531 ----FETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAK 606 (633)
Q Consensus 531 ----ie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k 606 (633)
++.+++.|... ..+++.+..+||+|++.+|..+++.|..|..+|||||+++++|||||+|++||+.+.++
T Consensus 595 ~~~~a~~l~~~L~~~------~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r 668 (780)
T 1gm5_A 595 NVKSAVEMYEYLSKE------VFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPER 668 (780)
T ss_dssp --CHHHHHHHSGGGS------CC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSS
T ss_pred hHHHHHHHHHHHHhh------hcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCC
Confidence 45555555440 12467899999999999999999999999999999999999999999999999999886
No 47
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.92 E-value=2.5e-24 Score=260.87 Aligned_cols=254 Identities=17% Similarity=0.171 Sum_probs=186.8
Q ss_pred ChHHHHHHHHHHHc----CC--eEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccc
Q 035699 331 IYPFREELLQAVSE----YP--VLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGH 404 (633)
Q Consensus 331 i~~~q~~il~al~~----~~--~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~ 404 (633)
.+++|..+++.+.. ++ +++++|+||||||.++..+++.. ...+++++|++||++||.|++..+...++. .+.
T Consensus 604 ~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~-~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~-~~i 681 (1151)
T 2eyq_A 604 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA-VDNHKQVAVLVPTTLLAQQHYDNFRDRFAN-WPV 681 (1151)
T ss_dssp CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHH-HTTTCEEEEECSSHHHHHHHHHHHHHHSTT-TTC
T ss_pred CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHH-HHhCCeEEEEechHHHHHHHHHHHHHHhhc-CCC
Confidence 48899999988876 54 89999999999998876665543 233459999999999999999998877642 233
Q ss_pred eEeeeeecccc----------cCCCCcEEEeCchHHHHHHhcCCCCCCceeee-eeccc------------CCCccEEEe
Q 035699 405 EVGYSIRFEDC----------TSDKTVLKYMTDGMLLREIVLEPSLESYSVLI-DLINY------------RPDLKLLIS 461 (633)
Q Consensus 405 ~VGy~ir~e~~----------~s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-di~~~------------rpdlklil~ 461 (633)
.+++..++... .....+|+|+||++|. ....+.++++|| |.+|. +++.++++|
T Consensus 682 ~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~----~~~~~~~l~lvIiDEaH~~g~~~~~~l~~l~~~~~vl~l 757 (1151)
T 2eyq_A 682 RIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ----SDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTL 757 (1151)
T ss_dssp CEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH----SCCCCSSEEEEEEESGGGSCHHHHHHHHHHHTTSEEEEE
T ss_pred eEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh----CCccccccceEEEechHhcChHHHHHHHHhcCCCCEEEE
Confidence 34433322211 1235899999998653 345788999988 66553 356789999
Q ss_pred ecccCHHhHhhhhCCCC---EEEe-CCeeeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHH
Q 035699 462 SATLDAENFSDYFGSAP---IFKI-PRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEI 537 (633)
Q Consensus 462 SAT~~~~~~s~~f~~~p---ii~i-~gr~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~ 537 (633)
|||+....+...+.+.. ++.. |....++..++.......... .++..+ ...+++|||||+.+.++.+++.
T Consensus 758 SATp~p~~l~~~~~~~~~~~~i~~~~~~r~~i~~~~~~~~~~~i~~----~il~~l--~~g~qvlvf~~~v~~~~~l~~~ 831 (1151)
T 2eyq_A 758 TATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVRE----AILREI--LRGGQVYYLYNDVENIQKAAER 831 (1151)
T ss_dssp ESSCCCHHHHHHHTTTSEEEECCCCCCBCBCEEEEEEECCHHHHHH----HHHHHH--TTTCEEEEECCCSSCHHHHHHH
T ss_pred cCCCChhhHHHHHhcCCCceEEecCCCCccccEEEEecCCHHHHHH----HHHHHH--hcCCeEEEEECCHHHHHHHHHH
Confidence 99996655554443322 2222 334456776666544322222 222222 2458999999999999999999
Q ss_pred HHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCC
Q 035699 538 LKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPG 603 (633)
Q Consensus 538 L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G 603 (633)
|.... +++.+..+||+|++.+|..++..|..|..+|||||+++++|||||++++||..+
T Consensus 832 L~~~~-------p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~ 890 (1151)
T 2eyq_A 832 LAELV-------PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 890 (1151)
T ss_dssp HHHHC-------TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETT
T ss_pred HHHhC-------CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeC
Confidence 98863 567899999999999999999999999999999999999999999999999543
No 48
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.92 E-value=6.4e-25 Score=220.63 Aligned_cols=162 Identities=38% Similarity=0.639 Sum_probs=142.2
Q ss_pred HHHHHHHHccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccC----CeeeecchhHHHHHHHHHHH
Q 035699 319 LEMLQEERKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQ----GKIGCTQLRRVAAMSVAARV 394 (633)
Q Consensus 319 ~~~l~~~r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~----gkilitqPrR~aA~qva~rv 394 (633)
...+.+.+..+|++++|.++++++.++++++++|+|||||||++++++++.....+ .+++|++|+|++|.+++.++
T Consensus 50 ~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~ 129 (235)
T 3llm_A 50 LQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERV 129 (235)
T ss_dssp HHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHH
Confidence 35567788999999999999999999999999999999999999998877544332 28999999999999999999
Q ss_pred HHHhCCcccceEeeeeecccccC-CCCcEEEeCchHHHHHHhcCCCCCCceeee-eeccc------------------CC
Q 035699 395 SQEMGVKLGHEVGYSIRFEDCTS-DKTVLKYMTDGMLLREIVLEPSLESYSVLI-DLINY------------------RP 454 (633)
Q Consensus 395 a~e~g~~vg~~VGy~ir~e~~~s-~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-di~~~------------------rp 454 (633)
+..++..+|..+||.++++.... .+++|+|||||+|++++.. .|.++++|| |.+|. +|
T Consensus 130 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~--~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~ 207 (235)
T 3llm_A 130 AFERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEA--GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP 207 (235)
T ss_dssp HHTTTCCTTSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHH--CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT
T ss_pred HHHhccccCceEEEeechhhccCCCCCeEEEECHHHHHHHHHh--hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC
Confidence 99999999999999999888764 6789999999999999876 489999998 44433 47
Q ss_pred CccEEEeecccCHHhHhhhhCCCCEEEe
Q 035699 455 DLKLLISSATLDAENFSDYFGSAPIFKI 482 (633)
Q Consensus 455 dlklil~SAT~~~~~~s~~f~~~pii~i 482 (633)
++++++||||++.+.|++||.++|++.+
T Consensus 208 ~~~~il~SAT~~~~~~~~~~~~~pvi~v 235 (235)
T 3llm_A 208 EVRIVLMSATIDTSMFCEYFFNCPIIEV 235 (235)
T ss_dssp TSEEEEEECSSCCHHHHHHTTSCCCEEC
T ss_pred CCeEEEEecCCCHHHHHHHcCCCCEEeC
Confidence 8899999999998889999999999864
No 49
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.90 E-value=1.5e-23 Score=241.60 Aligned_cols=88 Identities=16% Similarity=0.070 Sum_probs=78.5
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCC--
Q 035699 518 IGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDG-- 595 (633)
Q Consensus 518 ~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~-- 595 (633)
..++||||+|.+.++.++..|... ++++..|||++.+.++..+.+.|++| .|+||||+|+||+||+.
T Consensus 441 gqpvLVft~sie~se~Ls~~L~~~---------gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~g 509 (853)
T 2fsf_A 441 GQPVLVGTISIEKSELVSNELTKA---------GIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGG 509 (853)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHT---------TCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTC
T ss_pred CCCEEEEECcHHHHHHHHHHHHHC---------CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCC
Confidence 457999999999999999999885 78899999999999998999999998 59999999999999997
Q ss_pred ------------------------------c-----cEEEeCCCCccc-cccCCCCc
Q 035699 596 ------------------------------I-----KYVIDPGFAKVK-SYNPKTGM 616 (633)
Q Consensus 596 ------------------------------V-----~~VID~G~~k~~-~yd~~~g~ 616 (633)
| .||||+.+|... .|+++.|.
T Consensus 510 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GR 566 (853)
T 2fsf_A 510 SWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGR 566 (853)
T ss_dssp CHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTT
T ss_pred chHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccc
Confidence 4 699999999875 48886654
No 50
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.89 E-value=6.2e-23 Score=227.77 Aligned_cols=265 Identities=10% Similarity=0.059 Sum_probs=177.1
Q ss_pred CCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccceEee
Q 035699 329 LPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGY 408 (633)
Q Consensus 329 LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~VGy 408 (633)
...+++|...+.++..+.+++++|+||||||.++..++.......+++++|++|+++|+.|+...+.. ++...+..++.
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~-~~~~~~~~v~~ 190 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVD-YRLFSHAMIKK 190 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHH-TTSSCGGGEEE
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHH-hhcCCccceEE
Confidence 36789999999999988999999999999999887776654333344999999999999999998844 33322223432
Q ss_pred eeeccccc---CCCCcEEEeCchHHHHHHhcCCCCCCceeee-eecc------------c-CCCccEEEeecccCHH--h
Q 035699 409 SIRFEDCT---SDKTVLKYMTDGMLLREIVLEPSLESYSVLI-DLIN------------Y-RPDLKLLISSATLDAE--N 469 (633)
Q Consensus 409 ~ir~e~~~---s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-di~~------------~-rpdlklil~SAT~~~~--~ 469 (633)
..++.... ....+|+|+||+.|++. ....+.++++|| |.+| . .+..++++||||+... .
T Consensus 191 ~~~~~~~~~~~~~~~~I~i~T~~~l~~~--~~~~~~~~~liIiDE~H~~~~~~~~~il~~~~~~~~~l~lSATp~~~~~~ 268 (510)
T 2oca_A 191 IGGGASKDDKYKNDAPVVVGTWQTVVKQ--PKEWFSQFGMMMNDECHLATGKSISSIISGLNNCMFKFGLSGSLRDGKAN 268 (510)
T ss_dssp CGGGCCTTGGGCTTCSEEEEEHHHHTTS--CGGGGGGEEEEEEETGGGCCHHHHHHHGGGCTTCCEEEEEESCGGGCSSC
T ss_pred EecCCccccccccCCcEEEEeHHHHhhc--hhhhhhcCCEEEEECCcCCCcccHHHHHHhcccCcEEEEEEeCCCCCccc
Confidence 22222111 25689999999977643 112577889888 4443 2 3556899999999322 1
Q ss_pred ---HhhhhCCCCEEEeCCe-------eee--EEEEEEcCCc--------hhHHH---------HHHHHHHHHHh---cCC
Q 035699 470 ---FSDYFGSAPIFKIPRR-------RYH--VELFYTKAPE--------ADYIE---------AAIVTALQIHV---NEP 517 (633)
Q Consensus 470 ---~s~~f~~~pii~i~gr-------~~p--v~~~y~~~~~--------~~yl~---------~~v~~l~~i~~---~~~ 517 (633)
+..+++ .+++.++.. ..| +.......+. ..|-. .....+..++. ...
T Consensus 269 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 347 (510)
T 2oca_A 269 IMQYVGMFG-EIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKD 347 (510)
T ss_dssp HHHHHHHHC-SEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTT
T ss_pred HHHhHHhhC-CeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHHhcC
Confidence 222332 333222221 111 1111111111 11211 01111222222 223
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeC-CccccCCCCCCc
Q 035699 518 IGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLAT-NIAETSLTIDGI 596 (633)
Q Consensus 518 ~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvAT-dIAerGLdIp~V 596 (633)
...+|||++ ...++.+++.|... +..+..+||+|++.+|..+++.|..|..+||||| +++++|||||+|
T Consensus 348 ~~~~ivf~~-~~~~~~l~~~L~~~---------~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v 417 (510)
T 2oca_A 348 ENAFVMFKH-VSHGKAIFDLIKNE---------YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNL 417 (510)
T ss_dssp CEEEEEESS-HHHHHHHHHHHHTT---------CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSE
T ss_pred CCeEEEEec-HHHHHHHHHHHHHc---------CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccC
Confidence 345667776 88888899988774 3478999999999999999999999999999999 999999999999
Q ss_pred cEEEeCCCCcc
Q 035699 597 KYVIDPGFAKV 607 (633)
Q Consensus 597 ~~VID~G~~k~ 607 (633)
++||..+.+..
T Consensus 418 ~~vi~~~~~~s 428 (510)
T 2oca_A 418 HHVVLAHGVKS 428 (510)
T ss_dssp EEEEESSCCCS
T ss_pred cEEEEeCCCCC
Confidence 99999888754
No 51
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.89 E-value=1.7e-23 Score=230.17 Aligned_cols=252 Identities=15% Similarity=0.130 Sum_probs=178.1
Q ss_pred cCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccceEe
Q 035699 328 TLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVG 407 (633)
Q Consensus 328 ~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~VG 407 (633)
.++++++|.+++.++..+..++++++||||||.++..++... +++++|++|++.|+.|.+.++.. +|.. .||
T Consensus 91 ~~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~----~~~~Lvl~P~~~L~~Q~~~~~~~-~~~~---~v~ 162 (472)
T 2fwr_A 91 EISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGI-FGEE---YVG 162 (472)
T ss_dssp CCCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH----CSCEEEEESSHHHHHHHHHHGGG-GCGG---GEE
T ss_pred CCCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEECCHHHHHHHHHHHHh-CCCc---ceE
Confidence 356899999999999999999999999999999988777654 34899999999999999998877 6554 033
Q ss_pred eeeecccccCCCCcEEEeCchHHHHHHhcCCCCCCceeee-eeccc------------CCCccEEEeecccCH-----Hh
Q 035699 408 YSIRFEDCTSDKTVLKYMTDGMLLREIVLEPSLESYSVLI-DLINY------------RPDLKLLISSATLDA-----EN 469 (633)
Q Consensus 408 y~ir~e~~~s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-di~~~------------rpdlklil~SAT~~~-----~~ 469 (633)
.... .....++|+|+||++|...+.. ....+++|| |.+|. .+..++|++|||+.. ..
T Consensus 163 ~~~g---~~~~~~~Ivv~T~~~l~~~~~~--~~~~~~liIvDEaH~~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~ 237 (472)
T 2fwr_A 163 EFSG---RIKELKPLTVSTYDSAYVNAEK--LGNRFMLLIFDEVHHLPAESYVQIAQMSIAPFRLGLTATFEREDGRHEI 237 (472)
T ss_dssp EBSS---SCBCCCSEEEEEHHHHHHTHHH--HTTTCSEEEEETGGGTTSTTTHHHHHTCCCSEEEEEESCCCCTTSGGGS
T ss_pred EECC---CcCCcCCEEEEEcHHHHHHHHH--hcCCCCEEEEECCcCCCChHHHHHHHhcCCCeEEEEecCccCCCCHHHH
Confidence 2111 1234578999999999877642 124578888 66654 245678999999941 12
Q ss_pred HhhhhCCCCEEEeC-----Ce---eeeEEEEEEcCCchh------------------------------H----------
Q 035699 470 FSDYFGSAPIFKIP-----RR---RYHVELFYTKAPEAD------------------------------Y---------- 501 (633)
Q Consensus 470 ~s~~f~~~pii~i~-----gr---~~pv~~~y~~~~~~~------------------------------y---------- 501 (633)
+..+++ +.++... +. .+.+.......+... +
T Consensus 238 l~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (472)
T 2fwr_A 238 LKEVVG-GKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERA 316 (472)
T ss_dssp HHHHTC-CEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSS
T ss_pred HHHHhC-CeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHH
Confidence 333332 2222111 00 000001111100000 0
Q ss_pred ----------------HHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHH
Q 035699 502 ----------------IEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTEL 565 (633)
Q Consensus 502 ----------------l~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~ 565 (633)
....+..+..++.....+++|||+++...++.+++.|. +..+||++++.+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~--------------~~~~~g~~~~~~ 382 (472)
T 2fwr_A 317 YEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL--------------IPAITHRTSREE 382 (472)
T ss_dssp STTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT--------------CCBCCSSSCSHH
T ss_pred HHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC--------------cceeeCCCCHHH
Confidence 00123444555555667899999999999999888762 457999999999
Q ss_pred HHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCcc
Q 035699 566 QAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKV 607 (633)
Q Consensus 566 R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~ 607 (633)
|..+++.|..|..+|||||+++++|||+|++++||+++.|..
T Consensus 383 R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s 424 (472)
T 2fwr_A 383 REEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGS 424 (472)
T ss_dssp HHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSC
T ss_pred HHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCC
Confidence 999999999999999999999999999999999999887754
No 52
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.89 E-value=7.4e-23 Score=236.27 Aligned_cols=248 Identities=14% Similarity=0.083 Sum_probs=160.9
Q ss_pred CCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHH---HHhCCcccce
Q 035699 329 LPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVS---QEMGVKLGHE 405 (633)
Q Consensus 329 LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva---~e~g~~vg~~ 405 (633)
+-.+++|...++.+..++ |+.++||||||+++.+|++...+. +..++|+.||+.||.+++..+. ..+|..
T Consensus 110 ~rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~-g~~v~VvTpTreLA~Qdae~m~~l~~~lGLs---- 182 (922)
T 1nkt_A 110 QRPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA-GNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQ---- 182 (922)
T ss_dssp CCCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT-TSCEEEEESSHHHHHHHHHHHHHHHHHTTCC----
T ss_pred CCCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh-CCCeEEEeCCHHHHHHHHHHHHHHHhhcCCe----
Confidence 456777777777888877 889999999999877776533232 3379999999999999877554 344554
Q ss_pred Eeeeeeccc----ccCCCCcEEEeCchHH-HHHHhcC-------CCCCCceeee-e----ec------------------
Q 035699 406 VGYSIRFED----CTSDKTVLKYMTDGML-LREIVLE-------PSLESYSVLI-D----LI------------------ 450 (633)
Q Consensus 406 VGy~ir~e~----~~s~~t~Iiv~TpGrL-L~~l~~~-------~~L~~~s~vI-d----i~------------------ 450 (633)
||..+.+.+ ...-+++|+|+|||+| +++|..+ ..+..+.++| | ++
T Consensus 183 v~~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~ 262 (922)
T 1nkt_A 183 VGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPADGAS 262 (922)
T ss_dssp EEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECCCCH
T ss_pred EEEEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCCcch
Confidence 443332221 1112479999999999 7777543 2567788777 1 11
Q ss_pred ----------ccC----------CCccEE-----------------EeecccCH--HhH-----h-hhhC--------CC
Q 035699 451 ----------NYR----------PDLKLL-----------------ISSATLDA--ENF-----S-DYFG--------SA 477 (633)
Q Consensus 451 ----------~~r----------pdlkli-----------------l~SAT~~~--~~~-----s-~~f~--------~~ 477 (633)
... ++.+++ +||||+.. ..+ + .+|. +.
T Consensus 263 ~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg 342 (922)
T 1nkt_A 263 NWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDG 342 (922)
T ss_dssp HHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSS
T ss_pred hHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeecC
Confidence 111 244566 88999731 111 1 1221 12
Q ss_pred CEEEe--------CCeee---------------------e-----------------------------------EEEEE
Q 035699 478 PIFKI--------PRRRY---------------------H-----------------------------------VELFY 493 (633)
Q Consensus 478 pii~i--------~gr~~---------------------p-----------------------------------v~~~y 493 (633)
.++.| +|+++ . +++..
T Consensus 343 ~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~ 422 (922)
T 1nkt_A 343 EVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVS 422 (922)
T ss_dssp CEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEE
T ss_pred ceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCCeEE
Confidence 22221 11111 0 00000
Q ss_pred ---------------EcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEecc
Q 035699 494 ---------------TKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIY 558 (633)
Q Consensus 494 ---------------~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lH 558 (633)
........+.+.+..+...+. ...++|||++|.+.++.++..|... ++++..||
T Consensus 423 IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~--~gqpvLVft~Sie~sE~Ls~~L~~~---------Gi~~~vLn 491 (922)
T 1nkt_A 423 IPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYA--KGQPVLIGTTSVERSEYLSRQFTKR---------RIPHNVLN 491 (922)
T ss_dssp CCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHHHHHHHT---------TCCCEEEC
T ss_pred eCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHh--cCCcEEEEECCHHHHHHHHHHHHHC---------CCCEEEec
Confidence 111222333333333333332 2357999999999999999999985 78899999
Q ss_pred CCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCc
Q 035699 559 GNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGI 596 (633)
Q Consensus 559 g~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V 596 (633)
|++.+.++..+.+.|++| .|+||||+|+||+||+.+
T Consensus 492 ak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~ 527 (922)
T 1nkt_A 492 AKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLG 527 (922)
T ss_dssp SSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTT
T ss_pred CChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCC
Confidence 999888888888999888 599999999999999975
No 53
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.86 E-value=1.1e-21 Score=222.11 Aligned_cols=271 Identities=12% Similarity=0.067 Sum_probs=158.5
Q ss_pred CChHHHHHHHHHHHc-----CCeEEEeccCCChhhchHHHHHHHh---ccc-----cCCeeeecchhHHHHHHHHHHHHH
Q 035699 330 PIYPFREELLQAVSE-----YPVLVIVGETGSGKTTQIPQYLYEA---GYT-----KQGKIGCTQLRRVAAMSVAARVSQ 396 (633)
Q Consensus 330 Pi~~~q~~il~al~~-----~~~vIi~a~TGSGKTt~lp~~Lle~---~~~-----~~gkilitqPrR~aA~qva~rva~ 396 (633)
...++|...+.++.. +..++++++||||||.++..++... ++. ..++++++.||++|+.|+......
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 577889888888765 5678999999999998755544332 211 334899999999999998732323
Q ss_pred HhCCcccceEeeeeecccccCCCCcEEEeCchHHHHHHhcC-----CCCCCceeee-eeccc---------------CCC
Q 035699 397 EMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREIVLE-----PSLESYSVLI-DLINY---------------RPD 455 (633)
Q Consensus 397 e~g~~vg~~VGy~ir~e~~~s~~t~Iiv~TpGrLL~~l~~~-----~~L~~~s~vI-di~~~---------------rpd 455 (633)
.++.. ++... ........+|+|+||++|...+... .....+++|| |.+|. .+.
T Consensus 258 ~~~~~----~~~~~--~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~~il~~~~~ 331 (590)
T 3h1t_A 258 PFGDA----RHKIE--GGKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNWREILEYFEP 331 (590)
T ss_dssp TTCSS----EEECC--C--CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------CHHHHHHSTT
T ss_pred hcchh----hhhhh--ccCCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHHHHHHHHhCCc
Confidence 33322 22111 1122356789999999999875322 2356677777 55543 244
Q ss_pred ccEEEeecccCH---HhHhhhhCCCCEEEeC-------CeeeeEEEEEEcC-----------------------------
Q 035699 456 LKLLISSATLDA---ENFSDYFGSAPIFKIP-------RRRYHVELFYTKA----------------------------- 496 (633)
Q Consensus 456 lklil~SAT~~~---~~~s~~f~~~pii~i~-------gr~~pv~~~y~~~----------------------------- 496 (633)
.++|+||||+.. ..+..+|+. ++.... |...|........
T Consensus 332 ~~~l~lTATP~~~~~~~~~~~f~~-~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (590)
T 3h1t_A 332 AFQIGMTATPLREDNRDTYRYFGN-PIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTK 410 (590)
T ss_dssp SEEEEEESSCSCTTTHHHHHHSCS-CSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------------CC
T ss_pred ceEEEeccccccccchhHHHHcCC-ceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccccccCCHH
Confidence 579999999832 334556643 333321 1111111111110
Q ss_pred Cch------hHHHHHHHHHHHHHh-cCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHH
Q 035699 497 PEA------DYIEAAIVTALQIHV-NEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKI 569 (633)
Q Consensus 497 ~~~------~yl~~~v~~l~~i~~-~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i 569 (633)
... .........+..++. ..+.+++||||+++..++.+++.|.......... ..-.+..+||+++. +|..+
T Consensus 411 ~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~-~~~~~~~i~g~~~~-~r~~~ 488 (590)
T 3h1t_A 411 DFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRK-HPDYVARVTSEEGK-IGKGH 488 (590)
T ss_dssp SHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTT-CTTSEEECSSTTHH-HHHHH
T ss_pred HhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhcc-CCCeEEEEeCCChH-HHHHH
Confidence 000 001111122322222 2445899999999999999999998753211111 12237789999865 68899
Q ss_pred hCCCCCCCee---EEEeCCccccCCCCCCccEEEeCCCCcccc
Q 035699 570 FEPTPEGARK---VVLATNIAETSLTIDGIKYVIDPGFAKVKS 609 (633)
Q Consensus 570 ~~~f~~g~rk---VLvATdIAerGLdIp~V~~VID~G~~k~~~ 609 (633)
++.|..|..+ ||+||+++++|||||+|++||++..|....
T Consensus 489 l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~ 531 (590)
T 3h1t_A 489 LSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMS 531 (590)
T ss_dssp HHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHH
T ss_pred HHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChH
Confidence 9999887655 899999999999999999999988876543
No 54
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.76 E-value=1.1e-18 Score=208.66 Aligned_cols=271 Identities=11% Similarity=0.095 Sum_probs=177.0
Q ss_pred CCChHHHHHHHHHHHcC--CeEEEeccCCChhhchHHHHHHHhcccc-CCeeeecchhHHHHHHHHHHHHHHhCCcccce
Q 035699 329 LPIYPFREELLQAVSEY--PVLVIVGETGSGKTTQIPQYLYEAGYTK-QGKIGCTQLRRVAAMSVAARVSQEMGVKLGHE 405 (633)
Q Consensus 329 LPi~~~q~~il~al~~~--~~vIi~a~TGSGKTt~lp~~Lle~~~~~-~gkilitqPrR~aA~qva~rva~e~g~~vg~~ 405 (633)
+..++||..++..+..+ ..++++++||+|||.+....+....... .++++|++|+ .++.|....+...+|..+...
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v~v~ 230 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRFALF 230 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCCEEC
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCEEEE
Confidence 56789999999887764 4789999999999987666655432222 2389999999 777888887877777665322
Q ss_pred Eeeeeec---c-cccCCCCcEEEeCchHHHHHHhcCC--CCCCceeee-eecccCC-------------------CccEE
Q 035699 406 VGYSIRF---E-DCTSDKTVLKYMTDGMLLREIVLEP--SLESYSVLI-DLINYRP-------------------DLKLL 459 (633)
Q Consensus 406 VGy~ir~---e-~~~s~~t~Iiv~TpGrLL~~l~~~~--~L~~~s~vI-di~~~rp-------------------dlkli 459 (633)
.|..... . .......+|+|+|++.|.+...... ...++.+|| |.+|... ..+++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L 310 (968)
T 3dmq_A 231 DDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVL 310 (968)
T ss_dssp CHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSEE
T ss_pred ccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcCCcEE
Confidence 1110000 0 0112356899999998864211000 134677777 6665431 22589
Q ss_pred EeecccCH---H-hHh--hhhCCC--------------------------------------------------------
Q 035699 460 ISSATLDA---E-NFS--DYFGSA-------------------------------------------------------- 477 (633)
Q Consensus 460 l~SAT~~~---~-~~s--~~f~~~-------------------------------------------------------- 477 (633)
++|||+-. . .++ .++...
T Consensus 311 ~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~ 390 (968)
T 3dmq_A 311 LLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAAN 390 (968)
T ss_dssp ESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGTC
T ss_pred EEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHhccc
Confidence 99999821 1 111 111000
Q ss_pred ------------------------C-EEEe---CCeeeeE---EEEEEcCCch---------------------------
Q 035699 478 ------------------------P-IFKI---PRRRYHV---ELFYTKAPEA--------------------------- 499 (633)
Q Consensus 478 ------------------------p-ii~i---~gr~~pv---~~~y~~~~~~--------------------------- 499 (633)
. ++.. .-..+|. ..+....+..
T Consensus 391 ~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p 470 (968)
T 3dmq_A 391 SDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYP 470 (968)
T ss_dssp CCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTHHHHCS
T ss_pred chhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHhhhcCh
Confidence 0 0000 0001111 1111111100
Q ss_pred ------------hH--HHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHH
Q 035699 500 ------------DY--IEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTEL 565 (633)
Q Consensus 500 ------------~y--l~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~ 565 (633)
.+ ...++..+..++...+.+++||||+++..++.++..|... .++.+..+||+|++.+
T Consensus 471 e~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~--------~g~~~~~lhG~~~~~~ 542 (968)
T 3dmq_A 471 ERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLRER--------EGIRAAVFHEGMSIIE 542 (968)
T ss_dssp GGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTT--------TCCCEEEECTTSCTTH
T ss_pred HHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHH--------cCCcEEEEeCCCCHHH
Confidence 00 0123445566666667789999999999999999999853 2788999999999999
Q ss_pred HHHHhCCCCCCC--eeEEEeCCccccCCCCCCccEEEeCCCCccc
Q 035699 566 QAKIFEPTPEGA--RKVVLATNIAETSLTIDGIKYVIDPGFAKVK 608 (633)
Q Consensus 566 R~~i~~~f~~g~--rkVLvATdIAerGLdIp~V~~VID~G~~k~~ 608 (633)
|..++..|..|. .+|||||+++++|||+|++++||+++.|..+
T Consensus 543 R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~ 587 (968)
T 3dmq_A 543 RDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNP 587 (968)
T ss_dssp HHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSH
T ss_pred HHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCH
Confidence 999999999997 9999999999999999999999999998653
No 55
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.74 E-value=1.7e-17 Score=173.08 Aligned_cols=156 Identities=15% Similarity=0.118 Sum_probs=113.0
Q ss_pred ccCCChHHHHHHHHHHHcC--CeEEEeccCCChhhchHHHHHHHhccccCC--eeeecchhHHHHHHHHHHHHHHhCCcc
Q 035699 327 KTLPIYPFREELLQAVSEY--PVLVIVGETGSGKTTQIPQYLYEAGYTKQG--KIGCTQLRRVAAMSVAARVSQEMGVKL 402 (633)
Q Consensus 327 ~~LPi~~~q~~il~al~~~--~~vIi~a~TGSGKTt~lp~~Lle~~~~~~g--kilitqPrR~aA~qva~rva~e~g~~v 402 (633)
.--..+++|..+++++..+ ++++++|+||||||+++.++++......+. +++|+.|||+||.|++..+........
T Consensus 111 g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~ 190 (300)
T 3fmo_B 111 GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 190 (300)
T ss_dssp TCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCC
Confidence 3445678888889999887 899999999999999999888876544332 799999999999999887655443322
Q ss_pred cceEeeeeeccccc---CCCCcEEEeCchHHHHHHhcCC--CCCCceeee-eec-----------------c-cCCCccE
Q 035699 403 GHEVGYSIRFEDCT---SDKTVLKYMTDGMLLREIVLEP--SLESYSVLI-DLI-----------------N-YRPDLKL 458 (633)
Q Consensus 403 g~~VGy~ir~e~~~---s~~t~Iiv~TpGrLL~~l~~~~--~L~~~s~vI-di~-----------------~-~rpdlkl 458 (633)
+..+++.+++.... ...++|+|||||+|++++...+ .+.++.+|| |.+ . ..++.|+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~ 270 (300)
T 3fmo_B 191 ELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQM 270 (300)
T ss_dssp TCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEE
T ss_pred CcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEE
Confidence 44455544433322 3457899999999999997643 688999988 222 1 2356899
Q ss_pred EEeecccCH--HhHhh-hhCCCCEEEe
Q 035699 459 LISSATLDA--ENFSD-YFGSAPIFKI 482 (633)
Q Consensus 459 il~SAT~~~--~~~s~-~f~~~pii~i 482 (633)
++||||++. ..|.. |+.++.+|.+
T Consensus 271 i~~SAT~~~~v~~~a~~~l~~p~~i~~ 297 (300)
T 3fmo_B 271 LLFSATFEDSVWKFAQKVVPDPNVIKL 297 (300)
T ss_dssp EEEESCCCHHHHHHHHHHSSSCEEEEE
T ss_pred EEEeccCCHHHHHHHHHHCCCCeEEEe
Confidence 999999954 45554 5555545554
No 56
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.72 E-value=2.5e-17 Score=186.97 Aligned_cols=146 Identities=16% Similarity=0.137 Sum_probs=107.4
Q ss_pred cEEEeecccC--HHhHhhhhCCCCEEEeCCeee--eEEE-EEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHH
Q 035699 457 KLLISSATLD--AENFSDYFGSAPIFKIPRRRY--HVEL-FYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQF 531 (633)
Q Consensus 457 klil~SAT~~--~~~~s~~f~~~pii~i~gr~~--pv~~-~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~ei 531 (633)
++.+||+|+. .+.|.+.+ +..++.||...- .++. ..........+.+.+..+...+.. ..++||||+|++.+
T Consensus 411 kL~GMTGTa~te~~Ef~~iY-~l~vv~IPtnkp~~R~d~~d~vy~t~~eK~~al~~~I~~~~~~--gqpVLVFt~S~e~s 487 (822)
T 3jux_A 411 KLAGMTGTAKTEESEFVQVY-GMEVVVIPTHKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYKK--GQPVLVGTTSIEKS 487 (822)
T ss_dssp EEEEEESSCGGGHHHHHHHS-CCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHH--TCCEEEEESSHHHH
T ss_pred HHeEECCCCchHHHHHHHHh-CCeEEEECCCCCcceeecCcEEEecHHHHHHHHHHHHHHHhhC--CCCEEEEECCHHHH
Confidence 7889999993 45676666 467888875321 1111 012234455555555555555432 35799999999999
Q ss_pred HHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCC--------CccEEEeCC
Q 035699 532 ETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTID--------GIKYVIDPG 603 (633)
Q Consensus 532 e~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp--------~V~~VID~G 603 (633)
+.++..|... ++.+..|||++.+.++..+...+.+| .|+||||+|+||+||+ |+.||||+.
T Consensus 488 E~Ls~~L~~~---------Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte 556 (822)
T 3jux_A 488 ELLSSMLKKK---------GIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTE 556 (822)
T ss_dssp HHHHHHHHTT---------TCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESS
T ss_pred HHHHHHHHHC---------CCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecC
Confidence 9999999874 78899999997777776666677777 5999999999999998 778999999
Q ss_pred CCccc-cccCCCCc
Q 035699 604 FAKVK-SYNPKTGM 616 (633)
Q Consensus 604 ~~k~~-~yd~~~g~ 616 (633)
+|... .|+++.|.
T Consensus 557 ~Pes~r~y~qriGR 570 (822)
T 3jux_A 557 RHESRRIDNQLRGR 570 (822)
T ss_dssp CCSSHHHHHHHHTT
T ss_pred CCCCHHHHHHhhCc
Confidence 99875 48876554
No 57
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.71 E-value=3.7e-17 Score=162.26 Aligned_cols=147 Identities=20% Similarity=0.150 Sum_probs=105.5
Q ss_pred CCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccc--------cCCeeeecchhHHHHHHHHHHHHHHhCC
Q 035699 329 LPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYT--------KQGKIGCTQLRRVAAMSVAARVSQEMGV 400 (633)
Q Consensus 329 LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~--------~~gkilitqPrR~aA~qva~rva~e~g~ 400 (633)
-..+++|.++++++.++++++++||||||||+++..+++..... .+++++|+.||+++|.|++..+......
T Consensus 41 ~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 120 (228)
T 3iuy_A 41 LKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYK 120 (228)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCCT
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhccc
Confidence 36788999999999999999999999999999887776654321 2338999999999999999988775322
Q ss_pred cccceEeeeeecccc------cCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eecc-----------------cCCC
Q 035699 401 KLGHEVGYSIRFEDC------TSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLIN-----------------YRPD 455 (633)
Q Consensus 401 ~vg~~VGy~ir~e~~------~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~~-----------------~rpd 455 (633)
+..++....+... ...+++|+|+|||+|++++.... .+.+++++| |.+| .+++
T Consensus 121 --~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~ 198 (228)
T 3iuy_A 121 --GLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPD 198 (228)
T ss_dssp --TCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSS
T ss_pred --CceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHHHHHHHhCCcC
Confidence 2222221211111 12457999999999999887766 689999988 4433 2457
Q ss_pred ccEEEeecccCH--HhHhh-hhCCC
Q 035699 456 LKLLISSATLDA--ENFSD-YFGSA 477 (633)
Q Consensus 456 lklil~SAT~~~--~~~s~-~f~~~ 477 (633)
.++++||||++. ..+.. |+.++
T Consensus 199 ~~~l~~SAT~~~~~~~~~~~~l~~p 223 (228)
T 3iuy_A 199 RQTVMTSATWPDTVRQLALSYLKDP 223 (228)
T ss_dssp CEEEEEESCCCHHHHHHHHTTCSSC
T ss_pred CeEEEEEeeCCHHHHHHHHHHCCCC
Confidence 899999999954 44444 44443
No 58
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.70 E-value=1.8e-16 Score=156.56 Aligned_cols=160 Identities=13% Similarity=0.093 Sum_probs=110.5
Q ss_pred ccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhcccc--CCeeeecchhHHHHHHHHHHHHHHhCCcccc
Q 035699 327 KTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTK--QGKIGCTQLRRVAAMSVAARVSQEMGVKLGH 404 (633)
Q Consensus 327 ~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~--~gkilitqPrR~aA~qva~rva~e~g~~vg~ 404 (633)
.--..+++|.++++++.++++++++||||||||.++..+++...... +++++|++|++++|.|++..+.... ...+.
T Consensus 33 g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~ 111 (224)
T 1qde_A 33 GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALA-FHMDI 111 (224)
T ss_dssp TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHT-TTSCC
T ss_pred CCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHh-cccCc
Confidence 34467899999999999999999999999999999888877654332 2389999999999999988776543 22232
Q ss_pred eEeeeeecccc-----cCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eecc-----------------cCCCccEEE
Q 035699 405 EVGYSIRFEDC-----TSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLIN-----------------YRPDLKLLI 460 (633)
Q Consensus 405 ~VGy~ir~e~~-----~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~~-----------------~rpdlklil 460 (633)
.++....+... .-..++|+|+|||+|++.+.... .+.+++++| |.+| ..++.++++
T Consensus 112 ~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~ 191 (224)
T 1qde_A 112 KVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVL 191 (224)
T ss_dssp CEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEE
T ss_pred eEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEE
Confidence 33322221111 11348999999999999987755 688899888 4332 235778999
Q ss_pred eecccCH--Hh-HhhhhCCCCEEEeCCeee
Q 035699 461 SSATLDA--EN-FSDYFGSAPIFKIPRRRY 487 (633)
Q Consensus 461 ~SAT~~~--~~-~s~~f~~~pii~i~gr~~ 487 (633)
||||++. .. +..|+.++..+.+++..+
T Consensus 192 lSAT~~~~~~~~~~~~~~~p~~i~~~~~~~ 221 (224)
T 1qde_A 192 LSATMPNDVLEVTTKFMRNPVRILVKKDEL 221 (224)
T ss_dssp EESSCCHHHHHHHHHHCSSCEEEC------
T ss_pred EEeecCHHHHHHHHHHCCCCEEEEecCCcc
Confidence 9999954 33 445666666666655433
No 59
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.70 E-value=1.2e-16 Score=161.72 Aligned_cols=156 Identities=16% Similarity=0.103 Sum_probs=111.5
Q ss_pred HccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhcccc--CCeeeecchhHHHHHHHHHHHHHHhCCccc
Q 035699 326 RKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTK--QGKIGCTQLRRVAAMSVAARVSQEMGVKLG 403 (633)
Q Consensus 326 r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~--~gkilitqPrR~aA~qva~rva~e~g~~vg 403 (633)
..-...+++|.++++++.++++++++|+||||||++++++++...... +.+++|++|||+||.|++..+.... ...|
T Consensus 61 ~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~-~~~~ 139 (249)
T 3ber_A 61 LGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALG-SSIG 139 (249)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHH-GGGT
T ss_pred cCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHh-ccCC
Confidence 344578999999999999999999999999999999888887654433 2379999999999999998775543 2223
Q ss_pred ceEeeeeeccc------ccCCCCcEEEeCchHHHHHHhcCC--CCCCceeee-eecc-----------------cCCCcc
Q 035699 404 HEVGYSIRFED------CTSDKTVLKYMTDGMLLREIVLEP--SLESYSVLI-DLIN-----------------YRPDLK 457 (633)
Q Consensus 404 ~~VGy~ir~e~------~~s~~t~Iiv~TpGrLL~~l~~~~--~L~~~s~vI-di~~-----------------~rpdlk 457 (633)
..++....+.. ....+++|+|+|||+|++++...+ .+.++++|| |.++ ..++.+
T Consensus 140 ~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~ 219 (249)
T 3ber_A 140 VQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK 219 (249)
T ss_dssp CCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSE
T ss_pred eeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCCCCCe
Confidence 23332222211 113568999999999999987644 688899888 3322 224789
Q ss_pred EEEeecccCH--HhHhh-hhCCCCEEEe
Q 035699 458 LLISSATLDA--ENFSD-YFGSAPIFKI 482 (633)
Q Consensus 458 lil~SAT~~~--~~~s~-~f~~~pii~i 482 (633)
+++||||++. ..+.. |+.++..+.+
T Consensus 220 ~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 220 TFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp EEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred EEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 9999999954 44444 5554444443
No 60
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.70 E-value=8.3e-17 Score=192.46 Aligned_cols=273 Identities=11% Similarity=-0.006 Sum_probs=169.0
Q ss_pred CChHHHHHHHHHHHc--------------CCeEEEeccCCChhhchHHHHHHHhccc-c-CCeeeecchhHHHHHHHHHH
Q 035699 330 PIYPFREELLQAVSE--------------YPVLVIVGETGSGKTTQIPQYLYEAGYT-K-QGKIGCTQLRRVAAMSVAAR 393 (633)
Q Consensus 330 Pi~~~q~~il~al~~--------------~~~vIi~a~TGSGKTt~lp~~Lle~~~~-~-~gkilitqPrR~aA~qva~r 393 (633)
...++|...++++.. +...+|+++||||||.++ .++...... . ..+++|++||++|+.|+...
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 356677777776654 356899999999999875 333332221 1 23899999999999999876
Q ss_pred HHHHhCCcccceEeeeeecc-c-ccCCCCcEEEeCchHHHHHHhcCC---CCCCceeee-eecc-------------cCC
Q 035699 394 VSQEMGVKLGHEVGYSIRFE-D-CTSDKTVLKYMTDGMLLREIVLEP---SLESYSVLI-DLIN-------------YRP 454 (633)
Q Consensus 394 va~e~g~~vg~~VGy~ir~e-~-~~s~~t~Iiv~TpGrLL~~l~~~~---~L~~~s~vI-di~~-------------~rp 454 (633)
+.......++. |.+.... . .....+.|+|+||+.|...+.... .+..+.+|| |.+| ..|
T Consensus 350 f~~f~~~~v~~--~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~~~~~~I~~~~p 427 (1038)
T 2w00_A 350 YQRFSPDSVNG--SENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFGEAQKNLKKKFK 427 (1038)
T ss_dssp HHTTSTTCSSS--SCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHHHHHHHHHHHCS
T ss_pred HHHhccccccc--ccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcchHHHHHHHHhCC
Confidence 65432222210 1111100 0 113467899999999999876532 355666666 6554 346
Q ss_pred CccEEEeecccCH-------HhHhhhhCCCCEEEe-------CCeeeeEEEEEEcC-Cc----------h----------
Q 035699 455 DLKLLISSATLDA-------ENFSDYFGSAPIFKI-------PRRRYHVELFYTKA-PE----------A---------- 499 (633)
Q Consensus 455 dlklil~SAT~~~-------~~~s~~f~~~pii~i-------~gr~~pv~~~y~~~-~~----------~---------- 499 (633)
+.++++||||+.. .....+|++ ++... .|-..|+.+.|... +. .
T Consensus 428 ~a~~lgfTATP~~~~~~~~~~~t~~~FG~-~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~~~ 506 (1038)
T 2w00_A 428 RYYQFGFTGTPIFPENALGSETTASVFGR-ELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQQA 506 (1038)
T ss_dssp SEEEEEEESSCCCSTTCTTSCCHHHHHCS-EEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTCSTTT
T ss_pred cccEEEEeCCccccccchhhhHHHHHhCC-eeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHHHHHHHHH
Confidence 7789999999832 234456653 33322 13345666555431 10 0
Q ss_pred ----hHHHHHHHHHHHHHhcC--------CCCCEEEEcCcHHHHHHHHHHHHHhhccc---CCCCCceEE-EeccCC---
Q 035699 500 ----DYIEAAIVTALQIHVNE--------PIGDILVFLTGQDQFETAEEILKQRTRGL---GTKIAELII-CPIYGN--- 560 (633)
Q Consensus 500 ----~yl~~~v~~l~~i~~~~--------~~g~iLVFl~t~~eie~l~~~L~~~~~~l---~~~~~~~~v-~~lHg~--- 560 (633)
..+...+..++..+... ..+++||||+++..+..+++.|....... .+...++.+ +.+||+
T Consensus 507 l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~ 586 (1038)
T 2w00_A 507 FLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANE 586 (1038)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC--
T ss_pred hcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCcc
Confidence 01112222232222111 23589999999999999999998763211 011123444 455542
Q ss_pred -------C----------CHH-----------------------------HHHHHhCCCCCCCeeEEEeCCccccCCCCC
Q 035699 561 -------L----------PTE-----------------------------LQAKIFEPTPEGARKVVLATNIAETSLTID 594 (633)
Q Consensus 561 -------l----------~~~-----------------------------~R~~i~~~f~~g~rkVLvATdIAerGLdIp 594 (633)
+ ++. .|..++..|+.|..+|||+||++.||+|+|
T Consensus 587 ~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP 666 (1038)
T 2w00_A 587 EQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAP 666 (1038)
T ss_dssp ----CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCT
T ss_pred ccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcc
Confidence 2 221 367788899999999999999999999999
Q ss_pred CccEEEeCCCCcc
Q 035699 595 GIKYVIDPGFAKV 607 (633)
Q Consensus 595 ~V~~VID~G~~k~ 607 (633)
.+ .||..+.|..
T Consensus 667 ~l-~tlylDkpl~ 678 (1038)
T 2w00_A 667 TL-NTLFVDKNLR 678 (1038)
T ss_dssp TE-EEEEEESCCC
T ss_pred cc-cEEEEccCCC
Confidence 99 6777776653
No 61
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.70 E-value=7.4e-17 Score=178.42 Aligned_cols=266 Identities=12% Similarity=0.070 Sum_probs=162.8
Q ss_pred CCChHHHHHHHHHH----HcCCeEEEeccCCChhhchHHHHHHHhccc-cCCeeeecchhHHHHHHHHHHHHHHhCCccc
Q 035699 329 LPIYPFREELLQAV----SEYPVLVIVGETGSGKTTQIPQYLYEAGYT-KQGKIGCTQLRRVAAMSVAARVSQEMGVKLG 403 (633)
Q Consensus 329 LPi~~~q~~il~al----~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~-~~gkilitqPrR~aA~qva~rva~e~g~~vg 403 (633)
..+++||.+.+.++ ..+..+|+..+||+|||.+....+...... ..++++|++|+. ++.|....+..... .
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~-l~~qw~~e~~~~~~-~-- 111 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLS-VLKNWEEELSKFAP-H-- 111 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECST-THHHHHHHHHHHCT-T--
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccHH-HHHHHHHHHHHHCC-C--
Confidence 34788999988877 456778999999999998765554433211 224899999965 55677666655432 1
Q ss_pred ceEeeeeeccc-ccCCCCcEEEeCchHHHHHHhcCCCCCCceeee-eecccC--------------CCccEEEeecccC-
Q 035699 404 HEVGYSIRFED-CTSDKTVLKYMTDGMLLREIVLEPSLESYSVLI-DLINYR--------------PDLKLLISSATLD- 466 (633)
Q Consensus 404 ~~VGy~ir~e~-~~s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-di~~~r--------------pdlklil~SAT~~- 466 (633)
..++....... ......+|+|+|+++|.+... .....+.+|| |.+|.. +....+++|||+-
T Consensus 112 ~~v~~~~g~~~~~~~~~~~ivi~t~~~l~~~~~--l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~~~l~LTaTP~~ 189 (500)
T 1z63_A 112 LRFAVFHEDRSKIKLEDYDIILTTYAVLLRDTR--LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIE 189 (500)
T ss_dssp SCEEECSSSTTSCCGGGSSEEEEEHHHHTTCHH--HHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCST
T ss_pred ceEEEEecCchhccccCCcEEEeeHHHHhccch--hcCCCcCEEEEeCccccCCHhHHHHHHHHhhccCcEEEEecCCCC
Confidence 12221111111 112346899999999976532 1234567777 776643 2235789999982
Q ss_pred --HHhHh---hhhCC--------------------------------CCEEEeCC-------eeeeE---EEEEEcCCc-
Q 035699 467 --AENFS---DYFGS--------------------------------APIFKIPR-------RRYHV---ELFYTKAPE- 498 (633)
Q Consensus 467 --~~~~s---~~f~~--------------------------------~pii~i~g-------r~~pv---~~~y~~~~~- 498 (633)
...+- .|+.. .|++.-.. ...|. ...+.+...
T Consensus 190 n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~ 269 (500)
T 1z63_A 190 NKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPE 269 (500)
T ss_dssp TCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEEECCCHH
T ss_pred CCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCeEEEEEcCCCHH
Confidence 22111 11100 11111000 01111 112222111
Q ss_pred --hhHH------------------------------------------------HHHHHHHHHHHhc--CCCCCEEEEcC
Q 035699 499 --ADYI------------------------------------------------EAAIVTALQIHVN--EPIGDILVFLT 526 (633)
Q Consensus 499 --~~yl------------------------------------------------~~~v~~l~~i~~~--~~~g~iLVFl~ 526 (633)
..|- ..++..+..++.. ....++|||+.
T Consensus 270 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~ 349 (500)
T 1z63_A 270 QAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQ 349 (500)
T ss_dssp HHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTTTCCEEEECS
T ss_pred HHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHccCCcEEEEEe
Confidence 0010 0011112222221 24578999999
Q ss_pred cHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCC-Ce-eEEEeCCccccCCCCCCccEEEeCCC
Q 035699 527 GQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEG-AR-KVVLATNIAETSLTIDGIKYVIDPGF 604 (633)
Q Consensus 527 t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g-~r-kVLvATdIAerGLdIp~V~~VID~G~ 604 (633)
+...++.++..|.... ++.+..+||++++.+|..+++.|..| .. .+|+||+++++|||++++++||+++.
T Consensus 350 ~~~~~~~l~~~l~~~~--------~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~ 421 (500)
T 1z63_A 350 FVDMGKIIRNIIEKEL--------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDR 421 (500)
T ss_dssp CHHHHHHHHHHHHHHH--------TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSC
T ss_pred hHHHHHHHHHHHHHhh--------CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCC
Confidence 9999999999998742 56788899999999999999999877 33 48999999999999999999999988
Q ss_pred Cccc
Q 035699 605 AKVK 608 (633)
Q Consensus 605 ~k~~ 608 (633)
|..+
T Consensus 422 ~~~~ 425 (500)
T 1z63_A 422 WWNP 425 (500)
T ss_dssp CSCC
T ss_pred CCCc
Confidence 7553
No 62
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.69 E-value=1.7e-16 Score=159.27 Aligned_cols=155 Identities=17% Similarity=0.094 Sum_probs=110.9
Q ss_pred CCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccc---cCCeeeecchhHHHHHHHHHHHHHHhCCcccce
Q 035699 329 LPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYT---KQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHE 405 (633)
Q Consensus 329 LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~---~~gkilitqPrR~aA~qva~rva~e~g~~vg~~ 405 (633)
-..+++|.++++++.++++++++||||||||.++..+++..... .+.+++|+.||++||.|++..+.... ...|..
T Consensus 50 ~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~ 128 (245)
T 3dkp_A 50 QMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKIS-EGTGFR 128 (245)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHT-TTSCCC
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHh-cccCce
Confidence 34789999999999999999999999999999988887765432 22389999999999999998776543 223333
Q ss_pred Eeeeeec-------ccccCCCCcEEEeCchHHHHHHhcCC---CCCCceeee-eecc---------------------cC
Q 035699 406 VGYSIRF-------EDCTSDKTVLKYMTDGMLLREIVLEP---SLESYSVLI-DLIN---------------------YR 453 (633)
Q Consensus 406 VGy~ir~-------e~~~s~~t~Iiv~TpGrLL~~l~~~~---~L~~~s~vI-di~~---------------------~r 453 (633)
++..... ......+++|+|+|||+|++++...+ .+.+++++| |.+| ..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~ 208 (245)
T 3dkp_A 129 IHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTS 208 (245)
T ss_dssp EECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCC
T ss_pred EEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCC
Confidence 3322111 11224568999999999999998763 688899888 3322 12
Q ss_pred CCccEEEeecccC--HHhHhh-hhCCCCEEEeCC
Q 035699 454 PDLKLLISSATLD--AENFSD-YFGSAPIFKIPR 484 (633)
Q Consensus 454 pdlklil~SAT~~--~~~~s~-~f~~~pii~i~g 484 (633)
++.++++||||++ ...+.. ++.++..+.+.+
T Consensus 209 ~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~ 242 (245)
T 3dkp_A 209 HKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGA 242 (245)
T ss_dssp TTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC
T ss_pred CCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCC
Confidence 4679999999995 355555 444444455543
No 63
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.69 E-value=3e-16 Score=156.53 Aligned_cols=158 Identities=16% Similarity=0.112 Sum_probs=112.5
Q ss_pred HccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccc------cCCeeeecchhHHHHHHHHHHHHHHhC
Q 035699 326 RKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYT------KQGKIGCTQLRRVAAMSVAARVSQEMG 399 (633)
Q Consensus 326 r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~------~~gkilitqPrR~aA~qva~rva~e~g 399 (633)
..--..+++|.++++++.++++++++||||||||+++..+++...+. .+.+++|++||+++|.|++..+.. ++
T Consensus 43 ~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~ 121 (236)
T 2pl3_A 43 AQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRK-VG 121 (236)
T ss_dssp TTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHH-HT
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHH-Hh
Confidence 44457789999999999999999999999999999988877655321 234899999999999999987655 43
Q ss_pred CcccceEeeeeecccc-----cCCCCcEEEeCchHHHHHHhcC--CCCCCceeee-eecc-----------------cCC
Q 035699 400 VKLGHEVGYSIRFEDC-----TSDKTVLKYMTDGMLLREIVLE--PSLESYSVLI-DLIN-----------------YRP 454 (633)
Q Consensus 400 ~~vg~~VGy~ir~e~~-----~s~~t~Iiv~TpGrLL~~l~~~--~~L~~~s~vI-di~~-----------------~rp 454 (633)
...+..++...++... ...+++|+|+|||+|++++... ..+.+++++| |.+| ..+
T Consensus 122 ~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~ 201 (236)
T 2pl3_A 122 KNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPK 201 (236)
T ss_dssp TTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCT
T ss_pred CCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCC
Confidence 3333344433322211 1246899999999999998765 3678898888 4332 224
Q ss_pred CccEEEeecccCH--HhHhh-hhCCCCEEEeCC
Q 035699 455 DLKLLISSATLDA--ENFSD-YFGSAPIFKIPR 484 (633)
Q Consensus 455 dlklil~SAT~~~--~~~s~-~f~~~pii~i~g 484 (633)
+.++++||||++. ..+.. ++.++..+.+.+
T Consensus 202 ~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 202 KRQTLLFSATQTKSVKDLARLSLKNPEYVWVHE 234 (236)
T ss_dssp TSEEEEEESSCCHHHHHHHHHSCSSCEEEECCC
T ss_pred CCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC
Confidence 6789999999954 44554 455555555543
No 64
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.69 E-value=2.5e-16 Score=155.45 Aligned_cols=156 Identities=16% Similarity=0.099 Sum_probs=110.8
Q ss_pred ccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhcccc--CCeeeecchhHHHHHHHHHHHHHHhCCc---
Q 035699 327 KTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTK--QGKIGCTQLRRVAAMSVAARVSQEMGVK--- 401 (633)
Q Consensus 327 ~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~--~gkilitqPrR~aA~qva~rva~e~g~~--- 401 (633)
.-...+++|.++++++.++++++++|+||||||+++..+++...... +.+++|+.||+++|.|++..+.......
T Consensus 23 g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 102 (219)
T 1q0u_A 23 RFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKD 102 (219)
T ss_dssp TCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGG
T ss_pred CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccc
Confidence 44467899999999999999999999999999999888887764432 2389999999999999998776654321
Q ss_pred ccceEeeeeecccc------cCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eec----------------cc-CCCc
Q 035699 402 LGHEVGYSIRFEDC------TSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLI----------------NY-RPDL 456 (633)
Q Consensus 402 vg~~VGy~ir~e~~------~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~----------------~~-rpdl 456 (633)
.+..++....+.+. ...+++|+|+|||+|++.+.... .+.+++++| |.+ .. .++.
T Consensus 103 ~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~ 182 (219)
T 1q0u_A 103 RMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDL 182 (219)
T ss_dssp GCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTC
T ss_pred cceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChHHHHHHHHHhCCccc
Confidence 02233322222211 12467899999999999987655 688888888 332 22 3478
Q ss_pred cEEEeecccCH--Hh-HhhhhCCCCEEEe
Q 035699 457 KLLISSATLDA--EN-FSDYFGSAPIFKI 482 (633)
Q Consensus 457 klil~SAT~~~--~~-~s~~f~~~pii~i 482 (633)
++++||||++. .. +..|+.++..+.+
T Consensus 183 ~~l~~SAT~~~~~~~~~~~~~~~p~~~~~ 211 (219)
T 1q0u_A 183 QMLVFSATIPEKLKPFLKKYMENPTFVHV 211 (219)
T ss_dssp EEEEEESCCCGGGHHHHHHHCSSCEEEEC
T ss_pred EEEEEecCCCHHHHHHHHHHcCCCeEEEe
Confidence 99999999943 33 3445555444443
No 65
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.69 E-value=7.6e-17 Score=161.94 Aligned_cols=153 Identities=16% Similarity=0.031 Sum_probs=107.7
Q ss_pred CChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccc-------cCCeeeecchhHHHHHHHHHHHHHHhCCcc
Q 035699 330 PIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYT-------KQGKIGCTQLRRVAAMSVAARVSQEMGVKL 402 (633)
Q Consensus 330 Pi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~-------~~gkilitqPrR~aA~qva~rva~e~g~~v 402 (633)
..+++|.++++++.++++++++||||||||+++..+++..... .+++++|+.|||+||.|++..+.... ...
T Consensus 51 ~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~-~~~ 129 (242)
T 3fe2_A 51 EPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYC-RAC 129 (242)
T ss_dssp SCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHH-HHT
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHH-hhc
Confidence 3789999999999999999999999999999988777654331 23379999999999999977665432 111
Q ss_pred cceEeeeeecccc------cCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eecc-----------------cCCCcc
Q 035699 403 GHEVGYSIRFEDC------TSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLIN-----------------YRPDLK 457 (633)
Q Consensus 403 g~~VGy~ir~e~~------~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~~-----------------~rpdlk 457 (633)
|..++....+... ...+++|+|+|||+|++++.... .+.+++++| |.+| .+++.+
T Consensus 130 ~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q 209 (242)
T 3fe2_A 130 RLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 209 (242)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCE
T ss_pred CceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccce
Confidence 2223322221111 12357999999999999997766 789999988 3322 236789
Q ss_pred EEEeecccCH--HhHhh-hhCCCCEEEeC
Q 035699 458 LLISSATLDA--ENFSD-YFGSAPIFKIP 483 (633)
Q Consensus 458 lil~SAT~~~--~~~s~-~f~~~pii~i~ 483 (633)
+++||||++. ..+.. |+.++..+.+.
T Consensus 210 ~~~~SAT~~~~~~~~~~~~l~~~~~i~~~ 238 (242)
T 3fe2_A 210 TLMWSATWPKEVRQLAEDFLKDYIHINIG 238 (242)
T ss_dssp EEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred EEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 9999999954 45554 55544445543
No 66
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.68 E-value=1.6e-16 Score=158.40 Aligned_cols=152 Identities=16% Similarity=0.096 Sum_probs=109.4
Q ss_pred CChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhcccc--CCeeeecchhHHHHHHHHHHHHHHhCCcccceEe
Q 035699 330 PIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTK--QGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVG 407 (633)
Q Consensus 330 Pi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~--~gkilitqPrR~aA~qva~rva~e~g~~vg~~VG 407 (633)
..+++|.++++++.++++++++++||||||.++..+++...... +.+++|+.||+++|.|++..+........+..++
T Consensus 46 ~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 125 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECH 125 (230)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEE
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEE
Confidence 37899999999999999999999999999999888887764432 2389999999999999998776653222233344
Q ss_pred eeeeccc-----ccCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eecc-----------------cC-CCccEEEee
Q 035699 408 YSIRFED-----CTSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLIN-----------------YR-PDLKLLISS 462 (633)
Q Consensus 408 y~ir~e~-----~~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~~-----------------~r-pdlklil~S 462 (633)
...++.. ....+++|+|+|||+|++++.... .+.+++++| |.+| .. ++.++++||
T Consensus 126 ~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lS 205 (230)
T 2oxc_A 126 VFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVS 205 (230)
T ss_dssp EECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEE
T ss_pred EEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEE
Confidence 3222211 112468999999999999987655 678888888 3332 22 367899999
Q ss_pred cccCHH---hHhhhhCCCCEEE
Q 035699 463 ATLDAE---NFSDYFGSAPIFK 481 (633)
Q Consensus 463 AT~~~~---~~s~~f~~~pii~ 481 (633)
||++.+ .+..||.++..+.
T Consensus 206 AT~~~~~~~~~~~~~~~p~~i~ 227 (230)
T 2oxc_A 206 ATYPEFLANALTKYMRDPTFVR 227 (230)
T ss_dssp SCCCHHHHHHHTTTCSSCEEEC
T ss_pred eccCHHHHHHHHHHcCCCeEEE
Confidence 999643 3445665554443
No 67
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.68 E-value=3.4e-16 Score=152.32 Aligned_cols=147 Identities=18% Similarity=0.103 Sum_probs=107.4
Q ss_pred CCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhcccc--CCeeeecchhHHHHHHHHHHHHHHhCCcccceE
Q 035699 329 LPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTK--QGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEV 406 (633)
Q Consensus 329 LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~--~gkilitqPrR~aA~qva~rva~e~g~~vg~~V 406 (633)
-..+++|.++++++.++++++++||||||||.++..+++...... +.+++++.|++++|.|++..+........+..+
T Consensus 24 ~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 103 (206)
T 1vec_A 24 EKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKV 103 (206)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCE
T ss_pred CCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceE
Confidence 357899999999999999999999999999998888887764332 238999999999999999877665432213334
Q ss_pred eeeeeccc------ccCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eecc----------------c-CCCccEEEe
Q 035699 407 GYSIRFED------CTSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLIN----------------Y-RPDLKLLIS 461 (633)
Q Consensus 407 Gy~ir~e~------~~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~~----------------~-rpdlklil~ 461 (633)
+....+.. ....+++|+|+|||+|++.+.... .+.+++++| |.+| . .++.++++|
T Consensus 104 ~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~ 183 (206)
T 1vec_A 104 MATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLY 183 (206)
T ss_dssp EEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEE
T ss_pred EEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEE
Confidence 33222211 123568999999999999987665 688899888 4433 1 236899999
Q ss_pred ecccCH--HhHh-hhhC
Q 035699 462 SATLDA--ENFS-DYFG 475 (633)
Q Consensus 462 SAT~~~--~~~s-~~f~ 475 (633)
|||++. ..+. .|+.
T Consensus 184 SAT~~~~~~~~~~~~l~ 200 (206)
T 1vec_A 184 SATFPLSVQKFMNSHLE 200 (206)
T ss_dssp ESCCCHHHHHHHHHHCS
T ss_pred EeeCCHHHHHHHHHHcC
Confidence 999954 3444 4544
No 68
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.68 E-value=2.6e-16 Score=157.71 Aligned_cols=151 Identities=11% Similarity=0.099 Sum_probs=107.3
Q ss_pred CChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccc--cCCeeeecchhHHHHHHHHHHHHHHhCCcccceEe
Q 035699 330 PIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYT--KQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVG 407 (633)
Q Consensus 330 Pi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~--~~gkilitqPrR~aA~qva~rva~e~g~~vg~~VG 407 (633)
..+++|.++++++.++++++++||||||||+++..+++..... .+.+++|++||+++|.|++..+... +...+..++
T Consensus 52 ~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~-~~~~~~~~~ 130 (237)
T 3bor_A 52 KPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILAL-GDYMGATCH 130 (237)
T ss_dssp SCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH-TTTTTCCEE
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHH-hhhcCceEE
Confidence 3789999999999999999999999999999988888876433 2338999999999999998877554 333333333
Q ss_pred eeeeccccc-------CCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eecc-----------------cCCCccEEEe
Q 035699 408 YSIRFEDCT-------SDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLIN-----------------YRPDLKLLIS 461 (633)
Q Consensus 408 y~ir~e~~~-------s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~~-----------------~rpdlklil~ 461 (633)
....+.... ...++|+|+|||+|++++.... .+..+++|| |.++ ..++.++++|
T Consensus 131 ~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~ 210 (237)
T 3bor_A 131 ACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLL 210 (237)
T ss_dssp EECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEE
T ss_pred EEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEE
Confidence 222222111 2237999999999999987665 688899888 4332 2356899999
Q ss_pred ecccCH--HhHh-hhhCCCCEEE
Q 035699 462 SATLDA--ENFS-DYFGSAPIFK 481 (633)
Q Consensus 462 SAT~~~--~~~s-~~f~~~pii~ 481 (633)
|||++. ..+. .|+.++..+.
T Consensus 211 SAT~~~~~~~~~~~~l~~p~~i~ 233 (237)
T 3bor_A 211 SATMPTDVLEVTKKFMRDPIRIL 233 (237)
T ss_dssp CSSCCHHHHHHHHHHCSSCEEEC
T ss_pred EEecCHHHHHHHHHHCCCCEEEE
Confidence 999954 4444 4555443343
No 69
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.67 E-value=1.8e-16 Score=161.69 Aligned_cols=153 Identities=18% Similarity=0.166 Sum_probs=110.1
Q ss_pred ccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccc------cCCeeeecchhHHHHHHHHHHHHHHhCC
Q 035699 327 KTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYT------KQGKIGCTQLRRVAAMSVAARVSQEMGV 400 (633)
Q Consensus 327 ~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~------~~gkilitqPrR~aA~qva~rva~e~g~ 400 (633)
.--..+++|.++++++..+++++++|+||||||+++..+++..... .+.+++|+.|||+||.|++..+.... .
T Consensus 73 g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~-~ 151 (262)
T 3ly5_A 73 GFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELM-T 151 (262)
T ss_dssp TCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHT-T
T ss_pred CCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHH-h
Confidence 3344789999999999999999999999999999888777654322 23489999999999999998776543 3
Q ss_pred cccceEeeeeeccccc------CCCCcEEEeCchHHHHHHhcCC--CCCCceeee-eecc-----------------cCC
Q 035699 401 KLGHEVGYSIRFEDCT------SDKTVLKYMTDGMLLREIVLEP--SLESYSVLI-DLIN-----------------YRP 454 (633)
Q Consensus 401 ~vg~~VGy~ir~e~~~------s~~t~Iiv~TpGrLL~~l~~~~--~L~~~s~vI-di~~-----------------~rp 454 (633)
..+..++...++.... ..+++|+|||||+|++++...+ .+.++++|| |.++ ..+
T Consensus 152 ~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~ 231 (262)
T 3ly5_A 152 HHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPT 231 (262)
T ss_dssp TCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHSCS
T ss_pred hcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHHHhCCC
Confidence 3344444333222111 2357899999999999988765 688899888 4332 224
Q ss_pred CccEEEeecccCH--HhHhh-hhCCCCEE
Q 035699 455 DLKLLISSATLDA--ENFSD-YFGSAPIF 480 (633)
Q Consensus 455 dlklil~SAT~~~--~~~s~-~f~~~pii 480 (633)
+.++++||||++. ..|.. ++.+.+++
T Consensus 232 ~~q~l~~SAT~~~~v~~~~~~~l~~~~~~ 260 (262)
T 3ly5_A 232 RRQTMLFSATQTRKVEDLARISLKKEPLY 260 (262)
T ss_dssp SSEEEEECSSCCHHHHHHHHHHCSSCCEE
T ss_pred CCeEEEEEecCCHHHHHHHHHHcCCCCee
Confidence 6789999999954 55555 44545543
No 70
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.65 E-value=2e-15 Score=146.80 Aligned_cols=152 Identities=19% Similarity=0.133 Sum_probs=110.1
Q ss_pred ccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccc-----cCCeeeecchhHHHHHHHHHHHHHHhCCc
Q 035699 327 KTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYT-----KQGKIGCTQLRRVAAMSVAARVSQEMGVK 401 (633)
Q Consensus 327 ~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~-----~~gkilitqPrR~aA~qva~rva~e~g~~ 401 (633)
.--..+++|.++++++.++++++++||||||||+++..+++..... .+++++|++|+++++.|++..+....+.
T Consensus 20 ~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~- 98 (207)
T 2gxq_A 20 GLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPH- 98 (207)
T ss_dssp TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTT-
T ss_pred CCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhc-
Confidence 3347789999999999999999999999999999988888776442 2338999999999999999988776532
Q ss_pred ccceEeeeeeccc------ccCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eecc-----------------cCCCc
Q 035699 402 LGHEVGYSIRFED------CTSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLIN-----------------YRPDL 456 (633)
Q Consensus 402 vg~~VGy~ir~e~------~~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~~-----------------~rpdl 456 (633)
+ .++....+.. ....+++|+|+|||+|++++.... .+.+++++| |.+| ..++.
T Consensus 99 ~--~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~ 176 (207)
T 2gxq_A 99 L--KVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSR 176 (207)
T ss_dssp S--CEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTS
T ss_pred c--eEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHHHHHHHHHhCCccC
Confidence 1 1221111111 012357899999999999987654 788999988 4332 22477
Q ss_pred cEEEeecccCH--HhHhh-hhCCCCEEE
Q 035699 457 KLLISSATLDA--ENFSD-YFGSAPIFK 481 (633)
Q Consensus 457 klil~SAT~~~--~~~s~-~f~~~pii~ 481 (633)
++++||||++. ..+.+ |+.++.++.
T Consensus 177 ~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 204 (207)
T 2gxq_A 177 QTLLFSATLPSWAKRLAERYMKNPVLIN 204 (207)
T ss_dssp EEEEECSSCCHHHHHHHHHHCSSCEEEE
T ss_pred eEEEEEEecCHHHHHHHHHHcCCCeEEE
Confidence 89999999964 45554 554444443
No 71
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.65 E-value=1.5e-15 Score=149.67 Aligned_cols=151 Identities=12% Similarity=0.014 Sum_probs=108.4
Q ss_pred CChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccC--CeeeecchhHHHHHHHHHHHHHHhCCcccceEe
Q 035699 330 PIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQ--GKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVG 407 (633)
Q Consensus 330 Pi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~--gkilitqPrR~aA~qva~rva~e~g~~vg~~VG 407 (633)
..+++|.++++++.++.++++++|||||||.++..+++....... .+++|++|++++|.|++..+........+..++
T Consensus 36 ~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~ 115 (220)
T 1t6n_A 36 HPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 115 (220)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEE
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEE
Confidence 378999999999999999999999999999998888877643322 289999999999999998776654221133344
Q ss_pred eeeecccc-------cCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eecc-----------------c-CCCccEEE
Q 035699 408 YSIRFEDC-------TSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLIN-----------------Y-RPDLKLLI 460 (633)
Q Consensus 408 y~ir~e~~-------~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~~-----------------~-rpdlklil 460 (633)
....+... ....++|+|+|||+|+..+.... .+.+++++| |.+| . .++.++++
T Consensus 116 ~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~ 195 (220)
T 1t6n_A 116 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 195 (220)
T ss_dssp EESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEE
T ss_pred EEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEE
Confidence 22222110 12346899999999999987665 688999988 4332 2 23678999
Q ss_pred eecccC--HHhHh-hhhCCCCEE
Q 035699 461 SSATLD--AENFS-DYFGSAPIF 480 (633)
Q Consensus 461 ~SAT~~--~~~~s-~~f~~~pii 480 (633)
||||++ ...+. .|+.++..+
T Consensus 196 ~SAT~~~~~~~~~~~~~~~p~~i 218 (220)
T 1t6n_A 196 FSATLSKEIRPVCRKFMQDPMEI 218 (220)
T ss_dssp EESCCCTTTHHHHHTTCSSCEEE
T ss_pred EEeecCHHHHHHHHHHcCCCeEE
Confidence 999994 34444 455554443
No 72
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.64 E-value=1.6e-15 Score=153.00 Aligned_cols=152 Identities=18% Similarity=0.122 Sum_probs=107.5
Q ss_pred CChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccc-----------cCCeeeecchhHHHHHHHHHHHHHHh
Q 035699 330 PIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYT-----------KQGKIGCTQLRRVAAMSVAARVSQEM 398 (633)
Q Consensus 330 Pi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~-----------~~gkilitqPrR~aA~qva~rva~e~ 398 (633)
..+++|.++++++.++++++++|+||||||.++..+++..... .+.+++|+.|||+||.|++..+....
T Consensus 45 ~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 124 (253)
T 1wrb_A 45 RPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFS 124 (253)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHh
Confidence 4688999999999999999999999999999888777654322 12389999999999999998776543
Q ss_pred CCcccceEeeeeeccc------ccCCCCcEEEeCchHHHHHHhcCC-CCCCceeee-eecc------------------c
Q 035699 399 GVKLGHEVGYSIRFED------CTSDKTVLKYMTDGMLLREIVLEP-SLESYSVLI-DLIN------------------Y 452 (633)
Q Consensus 399 g~~vg~~VGy~ir~e~------~~s~~t~Iiv~TpGrLL~~l~~~~-~L~~~s~vI-di~~------------------~ 452 (633)
...+..++....+.. ....+++|+|+|||+|++++.... .+.+++++| |.+| .
T Consensus 125 -~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~ 203 (253)
T 1wrb_A 125 -LNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESN 203 (253)
T ss_dssp -TTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSC
T ss_pred -ccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhcc
Confidence 222223332222211 113568999999999999987766 788899888 3322 1
Q ss_pred CC---CccEEEeecccCH--HhHhh-hhCCCCEEEe
Q 035699 453 RP---DLKLLISSATLDA--ENFSD-YFGSAPIFKI 482 (633)
Q Consensus 453 rp---dlklil~SAT~~~--~~~s~-~f~~~pii~i 482 (633)
.| +.++++||||++. ..+.. |+.++..+.+
T Consensus 204 ~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~ 239 (253)
T 1wrb_A 204 MPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTV 239 (253)
T ss_dssp CCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEE
T ss_pred CCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEE
Confidence 22 5789999999954 45554 5554444444
No 73
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.63 E-value=2.9e-16 Score=155.55 Aligned_cols=112 Identities=16% Similarity=0.212 Sum_probs=93.6
Q ss_pred EEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHh
Q 035699 491 LFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIF 570 (633)
Q Consensus 491 ~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~ 570 (633)
..+...+..+. +..+..++...+++++||||+|+..++.+++.|... ++.+.++||+|++.+|..++
T Consensus 8 ~~~~~~~~~~k----~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~lhg~~~~~~r~~~~ 74 (212)
T 3eaq_A 8 EEAVPAPVRGR----LEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL---------GHPAQALHGDLSQGERERVL 74 (212)
T ss_dssp CEEEECCTTSH----HHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHH---------TCCEEEECSSSCHHHHHHHH
T ss_pred eeEEeCCHHHH----HHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc---------CCCEEEEECCCCHHHHHHHH
Confidence 33444444443 445555555566799999999999999999999885 78899999999999999999
Q ss_pred CCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccc-cccCCCC
Q 035699 571 EPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVK-SYNPKTG 615 (633)
Q Consensus 571 ~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~-~yd~~~g 615 (633)
+.|+.|..+||||||++++|||||+|++|||+|+|... .|.++.|
T Consensus 75 ~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~G 120 (212)
T 3eaq_A 75 GAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSG 120 (212)
T ss_dssp HHHHSSSCCEEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHT
T ss_pred HHHHCCCCeEEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhc
Confidence 99999999999999999999999999999999999764 3665544
No 74
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.60 E-value=6.5e-16 Score=161.39 Aligned_cols=115 Identities=17% Similarity=0.219 Sum_probs=96.4
Q ss_pred EEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHH
Q 035699 489 VELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAK 568 (633)
Q Consensus 489 v~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~ 568 (633)
++.+|...+..+.+. .+..++....++++||||+|+..++.+++.|... ++.+.++||+|++.+|..
T Consensus 3 v~~~~i~~~~~~K~~----~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~---------g~~~~~lhg~l~~~~r~~ 69 (300)
T 3i32_A 3 YEEEAVPAPVRGRLE----VLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL---------GHPAQALHGDMSQGERER 69 (300)
T ss_dssp SEEEEEECCSSSHHH----HHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTT---------TCCEEEECSCCCTHHHHH
T ss_pred eEEEEEECCHHHHHH----HHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhC---------CCCEEEEeCCCCHHHHHH
Confidence 456677666665544 3444444445789999999999999999999774 788999999999999999
Q ss_pred HhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccc-cccCCCCc
Q 035699 569 IFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVK-SYNPKTGM 616 (633)
Q Consensus 569 i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~-~yd~~~g~ 616 (633)
+++.|+.|..+||||||+|++|||||+|++|||+|+|... .|.++.|.
T Consensus 70 ~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GR 118 (300)
T 3i32_A 70 VMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGR 118 (300)
T ss_dssp HHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTC
T ss_pred HHHHhhcCCceEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccC
Confidence 9999999999999999999999999999999999999764 47765543
No 75
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.58 E-value=7.4e-14 Score=161.35 Aligned_cols=114 Identities=15% Similarity=0.044 Sum_probs=78.8
Q ss_pred CChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccceEeee
Q 035699 330 PIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGYS 409 (633)
Q Consensus 330 Pi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~VGy~ 409 (633)
-.+++|...++.+..++ |+.+.||||||.++.++++.... .+.+++|+.||++||.+.+..+...+ ..+|..||..
T Consensus 79 ~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL-~G~qv~VvTPTreLA~Qdae~m~~l~-~~lGLsv~~i 154 (997)
T 2ipc_A 79 RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL-TGKGVHVVTVNDYLARRDAEWMGPVY-RGLGLSVGVI 154 (997)
T ss_dssp CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT-TCSCCEEEESSHHHHHHHHHHHHHHH-HTTTCCEEEC
T ss_pred CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH-hCCCEEEEeCCHHHHHHHHHHHHHHH-HhcCCeEEEE
Confidence 44677777777888888 88999999999988887753323 23379999999999999887654432 2234445543
Q ss_pred eeccc----ccCCCCcEEEeCchHH-HHHHhcC-------CCCC---Cceeee
Q 035699 410 IRFED----CTSDKTVLKYMTDGML-LREIVLE-------PSLE---SYSVLI 447 (633)
Q Consensus 410 ir~e~----~~s~~t~Iiv~TpGrL-L~~l~~~-------~~L~---~~s~vI 447 (633)
+.+.+ .....++|+|+|||+| ++++..+ ..+. .+.++|
T Consensus 155 ~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lI 207 (997)
T 2ipc_A 155 QHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAI 207 (997)
T ss_dssp CTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEE
T ss_pred eCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEE
Confidence 33222 1123589999999999 8887654 1355 677666
No 76
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.56 E-value=8.7e-14 Score=160.07 Aligned_cols=78 Identities=13% Similarity=0.046 Sum_probs=74.1
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCcc
Q 035699 518 IGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIK 597 (633)
Q Consensus 518 ~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~ 597 (633)
.+++||||+|+..++.+++.|... ++.+..+||+|++.+|..+++.|+.|...||||||++++|||||+|+
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~---------gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~ 509 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH---------GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVS 509 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc---------CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCC
Confidence 478999999999999999999885 67889999999999999999999999999999999999999999999
Q ss_pred EEEeCCC
Q 035699 598 YVIDPGF 604 (633)
Q Consensus 598 ~VID~G~ 604 (633)
+||+++.
T Consensus 510 lVI~~d~ 516 (664)
T 1c4o_A 510 LVAILDA 516 (664)
T ss_dssp EEEETTT
T ss_pred EEEEeCC
Confidence 9999986
No 77
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.54 E-value=1.5e-14 Score=137.07 Aligned_cols=116 Identities=16% Similarity=0.393 Sum_probs=96.3
Q ss_pred EEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHH
Q 035699 489 VELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAK 568 (633)
Q Consensus 489 v~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~ 568 (633)
+.++|...+..++ ++..+..++...+.+++||||++...++.++..|... ++.+..+||+|++.+|..
T Consensus 4 i~~~~~~~~~~~~---K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~ 71 (165)
T 1fuk_A 4 IKQFYVNVEEEEY---KYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRND---------KFTVSAIYSDLPQQERDT 71 (165)
T ss_dssp CEEEEEEEESGGG---HHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHH
T ss_pred cEEEEEECCcchh---HHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc---------CCCEEEEECCCCHHHHHH
Confidence 4556665554442 2233444455556789999999999999999999874 678999999999999999
Q ss_pred HhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccc-cccCCCCc
Q 035699 569 IFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVK-SYNPKTGM 616 (633)
Q Consensus 569 i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~-~yd~~~g~ 616 (633)
+++.|+.|..+|||||+++++|+|+|++++||++++|... .|..+.|.
T Consensus 72 ~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR 120 (165)
T 1fuk_A 72 IMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGR 120 (165)
T ss_dssp HHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCS
T ss_pred HHHHHHcCCCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcc
Confidence 9999999999999999999999999999999999999764 57777664
No 78
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.54 E-value=1.3e-14 Score=137.30 Aligned_cols=116 Identities=18% Similarity=0.259 Sum_probs=96.2
Q ss_pred eEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHH
Q 035699 488 HVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQA 567 (633)
Q Consensus 488 pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~ 567 (633)
.+.++|...+..+.+. .+..++....++++||||++...++.+++.|... ++.+..+||+|++.+|.
T Consensus 9 ~i~~~~~~~~~~~K~~----~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~hg~~~~~~r~ 75 (163)
T 2hjv_A 9 NIEHAVIQVREENKFS----LLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDL---------GYPCDKIHGGMIQEDRF 75 (163)
T ss_dssp CEEEEEEECCGGGHHH----HHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHH
T ss_pred cceEEEEECChHHHHH----HHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHHH
Confidence 3667777766655443 3444444456689999999999999999999874 78899999999999999
Q ss_pred HHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccc-cccCCCCc
Q 035699 568 KIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVK-SYNPKTGM 616 (633)
Q Consensus 568 ~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~-~yd~~~g~ 616 (633)
.+++.|..|..+|||||+++++|||+|++++||++++|... .|..+.|.
T Consensus 76 ~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR 125 (163)
T 2hjv_A 76 DVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGR 125 (163)
T ss_dssp HHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTT
T ss_pred HHHHHHHcCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccc
Confidence 99999999999999999999999999999999999999764 36555443
No 79
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.53 E-value=1.5e-14 Score=138.43 Aligned_cols=106 Identities=16% Similarity=0.272 Sum_probs=92.1
Q ss_pred eEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHH
Q 035699 488 HVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQA 567 (633)
Q Consensus 488 pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~ 567 (633)
.+.++|...+..+ .++..+..++...+.+++||||++...++.++..|... ++.+..+||+|++.+|.
T Consensus 7 ~i~q~~~~~~~~~---~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~R~ 74 (175)
T 2rb4_A 7 NIRQYYVLCEHRK---DKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQD---------GHQVSLLSGELTVEQRA 74 (175)
T ss_dssp CEEEEEEECSSHH---HHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTT---------TCCEEEECSSCCHHHHH
T ss_pred CceEEEEEcCChH---hHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHHH
Confidence 3677777766543 23445666666667789999999999999999999874 67899999999999999
Q ss_pred HHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCC
Q 035699 568 KIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFA 605 (633)
Q Consensus 568 ~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~ 605 (633)
.+++.|..|..+|||||+++++|||+|++++||++++|
T Consensus 75 ~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p 112 (175)
T 2rb4_A 75 SIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLP 112 (175)
T ss_dssp HHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCC
T ss_pred HHHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCC
Confidence 99999999999999999999999999999999999998
No 80
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.52 E-value=1.1e-14 Score=139.42 Aligned_cols=113 Identities=12% Similarity=0.258 Sum_probs=95.3
Q ss_pred eEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHH
Q 035699 488 HVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQA 567 (633)
Q Consensus 488 pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~ 567 (633)
.+.++|...+..+.+ ..+..++...+.+++||||++...++.+++.|... ++.+..+||+|++.+|.
T Consensus 5 ~i~q~~~~~~~~~K~----~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~hg~~~~~~r~ 71 (172)
T 1t5i_A 5 GLQQYYVKLKDNEKN----RKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ---------NFPAIAIHRGMPQEERL 71 (172)
T ss_dssp CCEEEEEECCGGGHH----HHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHH
T ss_pred CeEEEEEECChHHHH----HHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhc---------CCCEEEEECCCCHHHHH
Confidence 356777776665543 34555555566789999999999999999999874 78899999999999999
Q ss_pred HHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccc-cccCC
Q 035699 568 KIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVK-SYNPK 613 (633)
Q Consensus 568 ~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~-~yd~~ 613 (633)
.+++.|..|..+|||||+++++|||+|++++||++++|... .|..+
T Consensus 72 ~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr 118 (172)
T 1t5i_A 72 SRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHR 118 (172)
T ss_dssp HHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHH
T ss_pred HHHHHHHCCCCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999753 25443
No 81
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.50 E-value=2.9e-13 Score=155.26 Aligned_cols=83 Identities=12% Similarity=0.161 Sum_probs=74.5
Q ss_pred CCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCe---eEEEeCCccccCCCC
Q 035699 517 PIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGAR---KVVLATNIAETSLTI 593 (633)
Q Consensus 517 ~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~r---kVLvATdIAerGLdI 593 (633)
+..++|||+.....++.+...|... ++.++.+||++++.+|..+++.|..|.. .+||+|++++.|||+
T Consensus 415 ~~~k~lIFs~~~~~~~~l~~~l~~~---------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl 485 (644)
T 1z3i_X 415 TSDKVVLVSNYTQTLDLFEKLCRNR---------RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNL 485 (644)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHH---------TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCC
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHC---------CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCccc
Confidence 4578999999999999999999875 7889999999999999999999987754 589999999999999
Q ss_pred CCccEEEeCCCCccc
Q 035699 594 DGIKYVIDPGFAKVK 608 (633)
Q Consensus 594 p~V~~VID~G~~k~~ 608 (633)
+++++||.++.+..+
T Consensus 486 ~~a~~Vi~~d~~wnp 500 (644)
T 1z3i_X 486 IGANRLVMFDPDWNP 500 (644)
T ss_dssp TTEEEEEECSCCSSH
T ss_pred ccCCEEEEECCCCCc
Confidence 999999999888543
No 82
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.48 E-value=1.8e-13 Score=160.56 Aligned_cols=81 Identities=10% Similarity=0.054 Sum_probs=73.1
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCC---eeEEEeCCccccCCCCC
Q 035699 518 IGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGA---RKVVLATNIAETSLTID 594 (633)
Q Consensus 518 ~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~---rkVLvATdIAerGLdIp 594 (633)
..++|||+.....++.+...|... ++.++.+||++++.+|..++..|..|. ..+|++|.+++.|||++
T Consensus 572 g~kvLIFsq~~~~ld~L~~~L~~~---------g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~ 642 (800)
T 3mwy_W 572 GHRVLIFSQMVRMLDILGDYLSIK---------GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLM 642 (800)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHH---------TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCT
T ss_pred CCeEEEEechHHHHHHHHHHHHhC---------CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCcc
Confidence 468999999999999999999875 788999999999999999999998754 35999999999999999
Q ss_pred CccEEEeCCCCcc
Q 035699 595 GIKYVIDPGFAKV 607 (633)
Q Consensus 595 ~V~~VID~G~~k~ 607 (633)
.+++||.++.+-.
T Consensus 643 ~a~~VI~~D~~wn 655 (800)
T 3mwy_W 643 TADTVVIFDSDWN 655 (800)
T ss_dssp TCCEEEESSCCSC
T ss_pred ccceEEEecCCCC
Confidence 9999999987754
No 83
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.47 E-value=1.2e-13 Score=134.42 Aligned_cols=120 Identities=17% Similarity=0.080 Sum_probs=84.4
Q ss_pred HccCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccc-----cCCeeeecchhHHHHHH-HHHHHHHHhC
Q 035699 326 RKTLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYT-----KQGKIGCTQLRRVAAMS-VAARVSQEMG 399 (633)
Q Consensus 326 r~~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~-----~~gkilitqPrR~aA~q-va~rva~e~g 399 (633)
...++.+++|.++++.+.+++++++.||||||||+++..++...... .+++++|++|+++++.| +...+....+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 45678999999999999999999999999999999877776643221 13489999999999999 5554544443
Q ss_pred CcccceEeeeeecccc------cCCCCcEEEeCchHHHHHHhcC-------CCCCCceeee
Q 035699 400 VKLGHEVGYSIRFEDC------TSDKTVLKYMTDGMLLREIVLE-------PSLESYSVLI 447 (633)
Q Consensus 400 ~~vg~~VGy~ir~e~~------~s~~t~Iiv~TpGrLL~~l~~~-------~~L~~~s~vI 447 (633)
. +..++........ ....++|+|+||++|.+.+... ..+.++++||
T Consensus 109 ~--~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iI 167 (216)
T 3b6e_A 109 K--WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLII 167 (216)
T ss_dssp T--TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEE
T ss_pred c--CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEE
Confidence 2 2223221111110 0124789999999999988764 3467888888
No 84
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.46 E-value=4.1e-14 Score=138.01 Aligned_cols=130 Identities=19% Similarity=0.200 Sum_probs=93.7
Q ss_pred hhhCCCCEEEeCCe---eeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCC
Q 035699 472 DYFGSAPIFKIPRR---RYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTK 548 (633)
Q Consensus 472 ~~f~~~pii~i~gr---~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~ 548 (633)
.|+.++..+.+... ...+.++|...+..+.+ ..+..++... ++++||||++...++.++..|...
T Consensus 10 ~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~----~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~------- 77 (191)
T 2p6n_A 10 GVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKM----VYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLK------- 77 (191)
T ss_dssp ------------------CCSEEEEEECCGGGHH----HHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHH-------
T ss_pred cccCCCEEEEECCCCCCCcCceEEEEEcChHHHH----HHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHc-------
Confidence 45555555555322 12356666666655543 3455555443 468999999999999999999875
Q ss_pred CCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccc-cccCCCC
Q 035699 549 IAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVK-SYNPKTG 615 (633)
Q Consensus 549 ~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~-~yd~~~g 615 (633)
++.+..+||+|++.+|..+++.|+.|..+|||||+++++|||+|++++||++++|... .|-.+.|
T Consensus 78 --g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~G 143 (191)
T 2p6n_A 78 --GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIG 143 (191)
T ss_dssp --TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHT
T ss_pred --CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhC
Confidence 7889999999999999999999999999999999999999999999999999999753 3554443
No 85
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.42 E-value=1.1e-13 Score=134.17 Aligned_cols=114 Identities=18% Similarity=0.198 Sum_probs=79.8
Q ss_pred eEEEEEEcCCchhHHHHHHHHHHHHHhcC-CCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHH
Q 035699 488 HVELFYTKAPEADYIEAAIVTALQIHVNE-PIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQ 566 (633)
Q Consensus 488 pv~~~y~~~~~~~yl~~~v~~l~~i~~~~-~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R 566 (633)
.+.++|...+..+.+. .+..++... +.+++||||++...++.++..|... ++.+..+||+|++.+|
T Consensus 19 ~i~q~~~~v~~~~K~~----~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~---------g~~~~~lhg~~~~~~r 85 (185)
T 2jgn_A 19 NITQKVVWVEESDKRS----FLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE---------GYACTSIHGDRSQRDR 85 (185)
T ss_dssp TEEEEEEECCGGGHHH----HHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHT---------TCCEEEEC--------
T ss_pred CceEEEEEeCcHHHHH----HHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHc---------CCceEEEeCCCCHHHH
Confidence 3667777666655444 333444333 4689999999999999999999874 7889999999999999
Q ss_pred HHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCCCccc-cccCCC
Q 035699 567 AKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFAKVK-SYNPKT 614 (633)
Q Consensus 567 ~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~~k~~-~yd~~~ 614 (633)
..+++.|..|..+|||||+++++|||+|++++||++++|... .|..+.
T Consensus 86 ~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~ 134 (185)
T 2jgn_A 86 EEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI 134 (185)
T ss_dssp CHHHHHHHHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHH
T ss_pred HHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHc
Confidence 999999999999999999999999999999999999999753 254433
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.42 E-value=3e-13 Score=152.02 Aligned_cols=94 Identities=12% Similarity=0.139 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEE
Q 035699 503 EAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVL 582 (633)
Q Consensus 503 ~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLv 582 (633)
......+..++.. .+|.+|||+|+...++.+++.|.. ..+ .++|.. ..+..+++.|+.|. .|++
T Consensus 370 ~~~~~~l~~~~~~-~~g~~lvff~S~~~~~~v~~~l~~-----------~~~-~~q~~~--~~~~~~l~~f~~~~-~il~ 433 (540)
T 2vl7_A 370 PIYSILLKRIYEN-SSKSVLVFFPSYEMLESVRIHLSG-----------IPV-IEENKK--TRHEEVLELMKTGK-YLVM 433 (540)
T ss_dssp HHHHHHHHHHHHT-CSSEEEEEESCHHHHHHHHTTCTT-----------SCE-EESTTT--CCHHHHHHHHHTSC-CEEE
T ss_pred HHHHHHHHHHHHh-CCCCEEEEeCCHHHHHHHHHHhcc-----------Cce-EecCCC--CcHHHHHHHHhcCC-eEEE
Confidence 3344445555443 568999999999999998877632 222 335543 34556667776553 6777
Q ss_pred --eCCccccCCCCCC----ccEEEeCCCCccccccC
Q 035699 583 --ATNIAETSLTIDG----IKYVIDPGFAKVKSYNP 612 (633)
Q Consensus 583 --ATdIAerGLdIp~----V~~VID~G~~k~~~yd~ 612 (633)
||+.+..|||+|| +.+||.+|+|..+.-||
T Consensus 434 ~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~ 469 (540)
T 2vl7_A 434 LVMRAKESEGVEFREKENLFESLVLAGLPYPNVSDD 469 (540)
T ss_dssp EEC---------------CEEEEEEESCCCCCTTSH
T ss_pred EEecCceecceecCCCcccccEEEEECCCCCCCCCH
Confidence 8999999999998 89999999998765454
No 87
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.10 E-value=2.4e-14 Score=136.39 Aligned_cols=102 Identities=15% Similarity=0.281 Sum_probs=88.5
Q ss_pred HHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCC
Q 035699 506 IVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATN 585 (633)
Q Consensus 506 v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATd 585 (633)
+..+..++...+.+++||||++...++.+++.|... ++.+..+||+|++.+|..+++.|..|..+|||||+
T Consensus 18 ~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~ 88 (170)
T 2yjt_D 18 TALLVHLLKQPEATRSIVFVRKRERVHELANWLREA---------GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD 88 (170)
Confidence 334555555555689999999999999999999774 78899999999999999999999999999999999
Q ss_pred ccccCCCCCCccEEEeCCCCccc-cccCCCCc
Q 035699 586 IAETSLTIDGIKYVIDPGFAKVK-SYNPKTGM 616 (633)
Q Consensus 586 IAerGLdIp~V~~VID~G~~k~~-~yd~~~g~ 616 (633)
++++|||+|++++||++++|... .|-.+.|.
T Consensus 89 ~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR 120 (170)
T 2yjt_D 89 VAARGIDIPDVSHVFNFDMPRSGDTYLHRIGR 120 (170)
Confidence 99999999999999999999764 47766654
No 88
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.38 E-value=1.3e-12 Score=150.19 Aligned_cols=133 Identities=15% Similarity=0.077 Sum_probs=96.2
Q ss_pred CccEEEeecccCHHhHhhhhCCCCEEEe----CCeeeeEEEEEEcCCchhHHHHHHHHHHHHHhcCCCCCEEEEcCcHHH
Q 035699 455 DLKLLISSATLDAENFSDYFGSAPIFKI----PRRRYHVELFYTKAPEADYIEAAIVTALQIHVNEPIGDILVFLTGQDQ 530 (633)
Q Consensus 455 dlklil~SAT~~~~~~s~~f~~~pii~i----~gr~~pv~~~y~~~~~~~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~e 530 (633)
..++++||||+....+.. . ..++.. .+...|+ +.. .+..+.+...+..+.... ...+++||||+|+..
T Consensus 386 ~~q~i~~SAT~~~~~~~~--~-~~~~~~~~r~~~l~~p~-i~v--~~~~~~~~~Ll~~l~~~~--~~~~~vlVf~~t~~~ 457 (661)
T 2d7d_A 386 MHNIVYVSATPGPYEIEH--T-DEMVEQIIRPTGLLDPL-IDV--RPIEGQIDDLIGEIQARI--ERNERVLVTTLTKKM 457 (661)
T ss_dssp CSEEEEECSSCCHHHHHH--C-SSCEEECCCTTCCCCCE-EEE--ECSTTHHHHHHHHHHHHH--TTTCEEEEECSSHHH
T ss_pred CCCEEEEecCCChhHHHh--h-hCeeeeeecccCCCCCe-EEE--ecccchHHHHHHHHHHHH--hcCCeEEEEECCHHH
Confidence 467899999996543321 0 111111 1222333 111 122233333333333322 234789999999999
Q ss_pred HHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCccccCCCCCCccEEEeCCC
Q 035699 531 FETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGF 604 (633)
Q Consensus 531 ie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAerGLdIp~V~~VID~G~ 604 (633)
++.+++.|... ++.+..+||++++.+|..+++.|+.|...||||||++++|+|||+|++||+++.
T Consensus 458 ae~L~~~L~~~---------gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~ 522 (661)
T 2d7d_A 458 SEDLTDYLKEI---------GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDA 522 (661)
T ss_dssp HHHHHHHHHHT---------TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTT
T ss_pred HHHHHHHHHhc---------CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCc
Confidence 99999999885 678899999999999999999999999999999999999999999999999986
No 89
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.33 E-value=2.2e-12 Score=132.33 Aligned_cols=134 Identities=7% Similarity=-0.077 Sum_probs=95.7
Q ss_pred CCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccceEee
Q 035699 329 LPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGY 408 (633)
Q Consensus 329 LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~VGy 408 (633)
+..+++|.+.+.++..+...+++++||||||.++..++........++++|+.|+++++.|+...+.... ...+..++.
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~-~~~~~~~~~ 190 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYR-LFSHAMIKK 190 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHT-SCCGGGEEE
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhc-ccccceEEE
Confidence 5788999999998888777889999999999987666554322233489999999999999999886653 322223332
Q ss_pred eeeccccc---CCCCcEEEeCchHHHHHHhcCCCCCCceeee-eeccc-------------CCCccEEEeeccc
Q 035699 409 SIRFEDCT---SDKTVLKYMTDGMLLREIVLEPSLESYSVLI-DLINY-------------RPDLKLLISSATL 465 (633)
Q Consensus 409 ~ir~e~~~---s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-di~~~-------------rpdlklil~SAT~ 465 (633)
...+.... ....+|+|+||+.|.+.. ...+.++++|| |.+|. .+..+++++|||+
T Consensus 191 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~--~~~~~~~~~vIiDEaH~~~~~~~~~il~~~~~~~~~l~lSATp 262 (282)
T 1rif_A 191 IGGGASKDDKYKNDAPVVVGTWQTVVKQP--KEWFSQFGMMMNDECHLATGKSISSIISGLNNCMFKFGLSGSL 262 (282)
T ss_dssp CSTTCSSTTCCCTTCSEEEECHHHHTTSC--GGGGGGEEEEEEETGGGCCHHHHHHHTTTCTTCCEEEEECSSC
T ss_pred EeCCCcchhhhccCCcEEEEchHHHHhhH--HHHHhhCCEEEEECCccCCcccHHHHHHHhhcCCeEEEEeCCC
Confidence 22222221 156899999999886541 12477888888 55442 3567899999999
No 90
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.19 E-value=1e-09 Score=123.54 Aligned_cols=96 Identities=9% Similarity=0.051 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCee
Q 035699 500 DYIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARK 579 (633)
Q Consensus 500 ~yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rk 579 (633)
.+.......+..+... .+|.+|||+|+....+.+++. .+..++.=..+++.......|. ..+ ..
T Consensus 376 ~~~~~l~~~i~~l~~~-~~g~~lvlF~Sy~~l~~v~~~------------~~~~v~~q~~~~~~~~~~~~~~--~~~-~~ 439 (551)
T 3crv_A 376 NMWKRYADYLLKIYFQ-AKANVLVVFPSYEIMDRVMSR------------ISLPKYVESEDSSVEDLYSAIS--ANN-KV 439 (551)
T ss_dssp HHHHHHHHHHHHHHHH-CSSEEEEEESCHHHHHHHHTT------------CCSSEEECCSSCCHHHHHHHTT--SSS-SC
T ss_pred HHHHHHHHHHHHHHHh-CCCCEEEEecCHHHHHHHHHh------------cCCcEEEcCCCCCHHHHHHHHH--hcC-Ce
Confidence 4555555566666554 468999999999988888862 1344444334566666556564 222 47
Q ss_pred EEEeC--CccccCCCCC---C--ccEEEeCCCCccccccC
Q 035699 580 VVLAT--NIAETSLTID---G--IKYVIDPGFAKVKSYNP 612 (633)
Q Consensus 580 VLvAT--dIAerGLdIp---~--V~~VID~G~~k~~~yd~ 612 (633)
||+|| .-..-|||+| | ..+||=.|+|..+. ||
T Consensus 440 vl~~v~gg~~~EGiD~~d~~g~~l~~viI~~lPfp~~-dp 478 (551)
T 3crv_A 440 LIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPYPPP-DD 478 (551)
T ss_dssp EEEEESSCCSCCSSCCEETTEESEEEEEEESCCCCCC-SH
T ss_pred EEEEEecceecccccccccCCcceeEEEEEcCCCCCC-CH
Confidence 99998 6889999999 3 77888889998765 65
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.15 E-value=6.1e-11 Score=119.23 Aligned_cols=125 Identities=19% Similarity=0.056 Sum_probs=91.9
Q ss_pred CCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCCcccceEee
Q 035699 329 LPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVKLGHEVGY 408 (633)
Q Consensus 329 LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~~vg~~VGy 408 (633)
+...++|.+.+..+..+..++++|+||+|||.++..++... +++++++.|++.++.|+...+.. ++... ++.
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~----~~~~liv~P~~~L~~q~~~~~~~-~~~~~---v~~ 163 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGI-FGEEY---VGE 163 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS----CSCEEEEESSHHHHHHHHHHHGG-GCGGG---EEE
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEeCCHHHHHHHHHHHHh-CCCCe---EEE
Confidence 45688999999999998889999999999999877766653 45899999999999999887776 55430 332
Q ss_pred eeecccccCCCCcEEEeCchHHHHHHhcCCCCCCceeee-eeccc------------CCCccEEEeecccC
Q 035699 409 SIRFEDCTSDKTVLKYMTDGMLLREIVLEPSLESYSVLI-DLINY------------RPDLKLLISSATLD 466 (633)
Q Consensus 409 ~ir~e~~~s~~t~Iiv~TpGrLL~~l~~~~~L~~~s~vI-di~~~------------rpdlklil~SAT~~ 466 (633)
... ......+|+|+|++.+...+.. ....+.+|| |.++. .+..++|++|||+.
T Consensus 164 ~~g---~~~~~~~i~v~T~~~l~~~~~~--~~~~~~llIiDEaH~l~~~~~~~i~~~~~~~~~l~LSATp~ 229 (237)
T 2fz4_A 164 FSG---RIKELKPLTVSTYDSAYVNAEK--LGNRFMLLIFDEVHHLPAESYVQIAQMSIAPFRLGLTATFE 229 (237)
T ss_dssp ESS---SCBCCCSEEEEEHHHHHHTHHH--HTTTCSEEEEECSSCCCTTTHHHHHHTCCCSEEEEEEESCC
T ss_pred EeC---CCCCcCCEEEEeHHHHHhhHHH--hcccCCEEEEECCccCCChHHHHHHHhccCCEEEEEecCCC
Confidence 111 1124578999999999876542 124577777 55543 34457889999983
No 92
>1x4q_A U4/U6 small nuclear ribonucleoprotein PRP3; PWI domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.91 E-value=1.3e-09 Score=93.66 Aligned_cols=63 Identities=25% Similarity=0.505 Sum_probs=57.6
Q ss_pred chhhhHhhhhhhhhhcCchhHHHHHHHHHhhccCChHHHHHHhhhcCCCCCHhHHHHHHHHHhhCC
Q 035699 5 DNLKTWVSDKLISLLGYSQPAVVQYVIGLSKQALSSADLETKLQEFEFSSTTETRAFAQEIFARVP 70 (633)
Q Consensus 5 ~~l~~wvsD~l~~llG~sd~~~~~~~~~~a~~a~s~~~l~~~L~~~~~~~~~~~~~Fa~el~~r~p 70 (633)
+.|+.||+++++.+||++|.+||+||+++++++.++..|+..|..+.. .+|..|+.+||..++
T Consensus 16 ~~lkpWI~kkv~e~LG~eD~~lVd~i~~~l~~~~dpk~l~~~L~~fLd---~~a~~Fv~eLW~lL~ 78 (92)
T 1x4q_A 16 DELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKKAADHLKPFLD---DSTLRFVDKLFEAVE 78 (92)
T ss_dssp HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTCCHHHHHHHHTTTTG---GGTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhh---hhHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999999999999998732 248999999999984
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=98.79 E-value=6.7e-09 Score=106.60 Aligned_cols=91 Identities=15% Similarity=0.142 Sum_probs=75.7
Q ss_pred CCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCC-Cee-EEEeCCccccCCCCC
Q 035699 517 PIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEG-ARK-VVLATNIAETSLTID 594 (633)
Q Consensus 517 ~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g-~rk-VLvATdIAerGLdIp 594 (633)
...++|||+.....++.+...|.... ++.++.+||++++.+|..+++.|..| ..+ +|+||+++++|||++
T Consensus 111 ~~~kvlIFs~~~~~~~~l~~~L~~~~--------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~ 182 (271)
T 1z5z_A 111 EGDKIAIFTQFVDMGKIIRNIIEKEL--------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLT 182 (271)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHH--------CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCT
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhc--------CCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcc
Confidence 35799999999999999999998742 57788999999999999999999877 555 799999999999999
Q ss_pred CccEEEeCCCCcccc-ccCCCC
Q 035699 595 GIKYVIDPGFAKVKS-YNPKTG 615 (633)
Q Consensus 595 ~V~~VID~G~~k~~~-yd~~~g 615 (633)
++++||++++|..+. |..+.|
T Consensus 183 ~a~~VI~~d~~wnp~~~~Q~~g 204 (271)
T 1z5z_A 183 SANRVIHFDRWWNPAVEDQATD 204 (271)
T ss_dssp TCSEEEECSCCSCTTTC-----
T ss_pred cCCEEEEECCCCChhHHHHHHH
Confidence 999999999986543 554444
No 94
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.63 E-value=5.8e-05 Score=86.02 Aligned_cols=94 Identities=9% Similarity=0.167 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeE
Q 035699 501 YIEAAIVTALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKV 580 (633)
Q Consensus 501 yl~~~v~~l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkV 580 (633)
+.......+..++... +|.+|||+|+....+.+++.|. .. +.. ..-++....+..+++.|. +...|
T Consensus 432 ~~~~~~~~i~~l~~~~-~g~~lvlF~Sy~~l~~v~~~l~-~~--------~~~---~~q~~~~~~~~~ll~~f~-~~~~v 497 (620)
T 4a15_A 432 ELDRMATVIEDIILKV-KKNTIVYFPSYSLMDRVENRVS-FE--------HMK---EYRGIDQKELYSMLKKFR-RDHGT 497 (620)
T ss_dssp HHHHHHHHHHHHHHHH-CSCEEEEESCHHHHHHHTSSCC-SC--------CEE---CCTTCCSHHHHHHHHHHT-TSCCE
T ss_pred HHHHHHHHHHHHHHhC-CCCEEEEeCCHHHHHHHHHHHH-hc--------chh---ccCCCChhHHHHHHHHhc-cCCcE
Confidence 4444445555555443 6889999999998888887764 11 222 444555567788888887 88899
Q ss_pred EEeCC--ccccCCCCCC--ccEEEeCCCCccc
Q 035699 581 VLATN--IAETSLTIDG--IKYVIDPGFAKVK 608 (633)
Q Consensus 581 LvATd--IAerGLdIp~--V~~VID~G~~k~~ 608 (633)
|+||. ...-|||++| ..+||=.|+|..+
T Consensus 498 L~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~ 529 (620)
T 4a15_A 498 IFAVSGGRLSEGINFPGNELEMIILAGLPFPR 529 (620)
T ss_dssp EEEETTSCC--------CCCCEEEESSCCCCC
T ss_pred EEEEecCceeccccCCCCceEEEEEEcCCCCC
Confidence 99975 8999999985 6688889999765
No 95
>3v53_A RNA-binding protein 25; PWI, RNA-binding domain; 2.90A {Homo sapiens}
Probab=97.46 E-value=0.00012 Score=65.35 Aligned_cols=61 Identities=15% Similarity=0.340 Sum_probs=52.6
Q ss_pred hhhhHhhhhhhhhhcCchhHHHHHHHHHhhccCChHHHHHHhhhcCCCCCHhHHHHHHHHHhhC
Q 035699 6 NLKTWVSDKLISLLGYSQPAVVQYVIGLSKQALSSADLETKLQEFEFSSTTETRAFAQEIFARV 69 (633)
Q Consensus 6 ~l~~wvsD~l~~llG~sd~~~~~~~~~~a~~a~s~~~l~~~L~~~~~~~~~~~~~Fa~el~~r~ 69 (633)
.|+-||+.+...+||+.|.++|+||+..-++-++|..|+..|..+-. .+|..|+.+||..+
T Consensus 46 ~lkPWI~kKI~E~LG~eEd~LVdfI~~~L~~~~~pk~l~~~L~~~LD---eeA~~FV~kLWrlL 106 (119)
T 3v53_A 46 RIRPWINKKIIEYIGEEEATLVDFVCSKVMAHSSPQSILDDVAMVLD---EEAEVFIVKMWRLL 106 (119)
T ss_dssp THHHHHHHHHHHHTC---CHHHHHHHHHHHTTCCHHHHHHHHHHHHT---THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH---hhHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999988732 37899999999864
No 96
>1mp1_A Ser/Arg-related nuclear matrix protein; four helix bundle, RNA binding protein; NMR {Homo sapiens} SCOP: a.188.1.1
Probab=97.27 E-value=0.00048 Score=60.84 Aligned_cols=62 Identities=18% Similarity=0.490 Sum_probs=52.2
Q ss_pred hhhhHhhhhhhhhhcCchhHHHHHHHHHhhc-cCChHHHHHHhhhcCCCCCHhHHHHHHHHHhhC
Q 035699 6 NLKTWVSDKLISLLGYSQPAVVQYVIGLSKQ-ALSSADLETKLQEFEFSSTTETRAFAQEIFARV 69 (633)
Q Consensus 6 ~l~~wvsD~l~~llG~sd~~~~~~~~~~a~~-a~s~~~l~~~L~~~~~~~~~~~~~Fa~el~~r~ 69 (633)
-++.||..++.++||+-|.+||+||+++-.. ..++..+...|..| =..-+|..|+.+||..+
T Consensus 24 ~ikpWI~kki~e~LG~EDdvlid~i~~~L~~~~~dpk~lqi~L~gF--L~~e~a~~Fv~eLW~LL 86 (111)
T 1mp1_A 24 VIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGF--LNGKNAREFMGELWPLL 86 (111)
T ss_dssp GGHHHHHHHHHHHHSSCCSHHHHHHHHHTTSSSCCHHHHHHHHTTT--SCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccHHHHHHHHHHhhccCCCHHHHHHHHHHH--hCcccHHHHHHHHHHHH
Confidence 5799999999999999999999999999876 46777877766555 23357899999999887
No 97
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.27 E-value=0.00035 Score=79.84 Aligned_cols=62 Identities=26% Similarity=0.396 Sum_probs=47.8
Q ss_pred HHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHH
Q 035699 334 FREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQ 396 (633)
Q Consensus 334 ~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~ 396 (633)
|++++..++......+|.||+|||||+.+...+... ...+.+|+++.||-.||-+++.++..
T Consensus 194 Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l-~~~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 194 QKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQA-VKQGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp HHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHH-HhCCCeEEEEcCchHHHHHHHHHHHh
Confidence 344455555667789999999999998877665543 33445999999999999999998864
No 98
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.87 E-value=0.0014 Score=74.58 Aligned_cols=66 Identities=18% Similarity=0.288 Sum_probs=50.9
Q ss_pred ChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHH
Q 035699 331 IYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQ 396 (633)
Q Consensus 331 i~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~ 396 (633)
+...|...+..+..+..++|.||+|||||+.+...+.......+.+|+++.||..||.++..++..
T Consensus 181 ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 181 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 356677777777788899999999999998766554432111344999999999999999988754
No 99
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.81 E-value=0.0017 Score=73.84 Aligned_cols=64 Identities=17% Similarity=0.191 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHcCCeEEEeccCCChhhchHHHH--HHHhccccCC-eeeecchhHHHHHHHHHHHHH
Q 035699 333 PFREELLQAVSEYPVLVIVGETGSGKTTQIPQY--LYEAGYTKQG-KIGCTQLRRVAAMSVAARVSQ 396 (633)
Q Consensus 333 ~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~--Lle~~~~~~g-kilitqPrR~aA~qva~rva~ 396 (633)
+.|...+..+..+.+++|+|++||||||.+... ++.......+ +|+++.||..||.++...+..
T Consensus 152 ~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~ 218 (608)
T 1w36_D 152 NWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGK 218 (608)
T ss_dssp CHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHH
Confidence 456666777778899999999999999764432 3322111223 899999999999988775543
No 100
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.0021 Score=75.39 Aligned_cols=65 Identities=22% Similarity=0.302 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHH
Q 035699 332 YPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQ 396 (633)
Q Consensus 332 ~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~ 396 (633)
.+.|..++..+..+..++|.||+|||||+.+...+.......+.+|+++.||..||..+..++..
T Consensus 362 n~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 362 NSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp CHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHh
Confidence 47788888888888889999999999998765544322111345899999999999999998865
No 101
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.58 E-value=0.003 Score=74.03 Aligned_cols=65 Identities=18% Similarity=0.278 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHH
Q 035699 332 YPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQ 396 (633)
Q Consensus 332 ~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~ 396 (633)
...|..++..+..+..++|.||+|||||+.+...+.......+.+|+++.||-.||.++..++..
T Consensus 358 n~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 358 NHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHH
Confidence 56788888888788899999999999998766554432111344999999999999999888754
No 102
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=96.36 E-value=0.0091 Score=67.94 Aligned_cols=20 Identities=40% Similarity=0.433 Sum_probs=13.5
Q ss_pred ccEEEeecccC-HHhHhhhhC
Q 035699 456 LKLLISSATLD-AENFSDYFG 475 (633)
Q Consensus 456 lklil~SAT~~-~~~~s~~f~ 475 (633)
..+|++|||+. .+.|...++
T Consensus 376 ~~~il~SaTL~p~~~~~~~lG 396 (620)
T 4a15_A 376 SKTIHMSGTLDPFDFYSDITG 396 (620)
T ss_dssp SEEEEEESSCCSHHHHHHHHC
T ss_pred CeEEEEccCCCcHHHHHHHhC
Confidence 35889999994 455555443
No 103
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.17 E-value=0.0066 Score=68.47 Aligned_cols=63 Identities=17% Similarity=0.165 Sum_probs=46.5
Q ss_pred CChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHH
Q 035699 330 PIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAAR 393 (633)
Q Consensus 330 Pi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~r 393 (633)
.+.+.|..++..+.++.+++|.|++||||||.+-..+... ...+.+|+++.||..+|..+...
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l-~~~g~~Vl~~ApT~~Aa~~L~e~ 251 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLA-ESLGLEVGLCAPTGKAARRLGEV 251 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHH-HhcCCeEEEecCcHHHHHHhHhh
Confidence 3456677778888889999999999999998755443221 22334899999999988776553
No 104
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.10 E-value=0.0059 Score=69.09 Aligned_cols=69 Identities=22% Similarity=0.261 Sum_probs=49.8
Q ss_pred ChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHH---HHhccccCCeeeecchhHHHHHHHHHHHHHHhCCc
Q 035699 331 IYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYL---YEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGVK 401 (633)
Q Consensus 331 i~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~L---le~~~~~~gkilitqPrR~aA~qva~rva~e~g~~ 401 (633)
+.+.|.+++.. .+..++|.|+.|||||+.+..-+ +..+-..+.+|+++.+|+.+|.++..++...+|..
T Consensus 10 Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~ 81 (647)
T 3lfu_A 10 LNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTS 81 (647)
T ss_dssp CCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCSC
T ss_pred CCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhccc
Confidence 45667666663 34568899999999998866533 33211122389999999999999999998887643
No 105
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.96 E-value=0.0077 Score=65.76 Aligned_cols=62 Identities=16% Similarity=0.069 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHH----cCC-eEEEeccCCChhhchHHHHHHHhccccC-CeeeecchhHHHHHHHHHHH
Q 035699 332 YPFREELLQAVS----EYP-VLVIVGETGSGKTTQIPQYLYEAGYTKQ-GKIGCTQLRRVAAMSVAARV 394 (633)
Q Consensus 332 ~~~q~~il~al~----~~~-~vIi~a~TGSGKTt~lp~~Lle~~~~~~-gkilitqPrR~aA~qva~rv 394 (633)
.+.|..++..+. +++ .++|.|+.|||||+.+-..+... ...+ ..|+++.||..+|..+..++
T Consensus 27 n~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l-~~~~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 27 TEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEAL-ISTGETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp CHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHH-HHTTCCCEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHH-HhcCCceEEEecCcHHHHHHHHhhh
Confidence 345555555443 334 89999999999998654433322 2222 27999999999987776654
No 106
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.30 E-value=0.017 Score=66.03 Aligned_cols=67 Identities=27% Similarity=0.411 Sum_probs=49.3
Q ss_pred ChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHH---HHHh-ccccCCeeeecchhHHHHHHHHHHHHHHhCC
Q 035699 331 IYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQY---LYEA-GYTKQGKIGCTQLRRVAAMSVAARVSQEMGV 400 (633)
Q Consensus 331 i~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~---Lle~-~~~~~gkilitqPrR~aA~qva~rva~e~g~ 400 (633)
+.+.|.+++... +..++|.|..|||||+.+..- ++.. +. ...+|+++..|+.+|.++..|+...++.
T Consensus 3 L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~-~~~~IL~lTfT~~Aa~em~~Rl~~~l~~ 73 (673)
T 1uaa_A 3 LNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGY-QARHIAAVTFTNKAAREMKERVGQTLGR 73 (673)
T ss_dssp CCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHCC-CGGGEEEEESSHHHHHHHHHHHHHHSCT
T ss_pred CCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcCC-CHHHeEEEeccHHHHHHHHHHHHHHcCc
Confidence 345666666643 556889999999999886643 3332 22 2338999999999999999999987764
No 107
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.23 E-value=0.013 Score=71.87 Aligned_cols=68 Identities=10% Similarity=0.137 Sum_probs=50.7
Q ss_pred CCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhcccc-----CCeeeecchhHHHHHHHHHHHHHHh
Q 035699 329 LPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTK-----QGKIGCTQLRRVAAMSVAARVSQEM 398 (633)
Q Consensus 329 LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~-----~gkilitqPrR~aA~qva~rva~e~ 398 (633)
....+-|..++..- +.+++|.|..|||||+.+..-+....... ..+|+|+.+|+.+|..+..|+...+
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 34566677776654 66799999999999999876554443321 2389999999999999999887754
No 108
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=94.72 E-value=0.032 Score=64.50 Aligned_cols=68 Identities=22% Similarity=0.229 Sum_probs=48.7
Q ss_pred ChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHH---HHHhccccCCeeeecchhHHHHHHHHHHHHHHhCC
Q 035699 331 IYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQY---LYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGV 400 (633)
Q Consensus 331 i~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~---Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~ 400 (633)
+.+.|.+++... ...++|.|..|||||+.+..- ++...-....+|+++..|+-||.++..|+...+|.
T Consensus 12 Ln~~Q~~av~~~--~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~ 82 (724)
T 1pjr_A 12 LNKEQQEAVRTT--EGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGG 82 (724)
T ss_dssp SCHHHHHHHHCC--SSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGG
T ss_pred CCHHHHHHHhCC--CCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhcc
Confidence 456677666653 345888899999999876543 33321112238999999999999999999887654
No 109
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.69 E-value=0.093 Score=48.97 Aligned_cols=24 Identities=38% Similarity=0.338 Sum_probs=19.1
Q ss_pred cCCeEEEeccCCChhhchHHHHHH
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~Ll 367 (633)
.+..+++.||+||||||.+-..+.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999987654433
No 110
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.43 E-value=0.038 Score=54.68 Aligned_cols=40 Identities=18% Similarity=0.019 Sum_probs=30.0
Q ss_pred HcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchh
Q 035699 343 SEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLR 383 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPr 383 (633)
..+..+++.|++||||||++.+.+.... ..+.++++.+|.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~-~~g~kVli~~~~ 49 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLE-YADVKYLVFKPK 49 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHH-HTTCCEEEEEEC
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHH-hcCCEEEEEEec
Confidence 3467889999999999999998887652 223378887774
No 111
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=93.28 E-value=0.16 Score=54.27 Aligned_cols=69 Identities=17% Similarity=0.209 Sum_probs=53.7
Q ss_pred cCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccC-CeeeecchhHHHHHHHHHHHHH
Q 035699 328 TLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQ-GKIGCTQLRRVAAMSVAARVSQ 396 (633)
Q Consensus 328 ~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~-gkilitqPrR~aA~qva~rva~ 396 (633)
.+.+.++|..++.++...+.+++..+-+.|||+.+..+++....... ..|+++.|++..|..+...+..
T Consensus 161 p~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~ 230 (385)
T 2o0j_A 161 KVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (385)
T ss_dssp ECCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 45779999999998877788999999999999876665554323333 3899999999999888765544
No 112
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=93.08 E-value=0.16 Score=57.16 Aligned_cols=71 Identities=17% Similarity=0.221 Sum_probs=55.2
Q ss_pred cCCChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCC-eeeecchhHHHHHHHHHHHHHHh
Q 035699 328 TLPIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQG-KIGCTQLRRVAAMSVAARVSQEM 398 (633)
Q Consensus 328 ~LPi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~g-kilitqPrR~aA~qva~rva~e~ 398 (633)
.+.+.++|..++..+..++.+++.++-|+|||+.+..+++......++ .++|+.|++..|..+...+...+
T Consensus 161 ~~~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i 232 (592)
T 3cpe_A 161 KVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAI 232 (592)
T ss_dssp BCCCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 356789999999988667889999999999999866554433333344 89999999999998887665544
No 113
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.04 E-value=0.058 Score=51.42 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=29.6
Q ss_pred cCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchh
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLR 383 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPr 383 (633)
.+.+++++|+.||||||.+.+.+.... ..+.++++++|.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~-~~g~~v~~~~~~ 40 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYK-LGKKKVAVFKPK 40 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH-HTTCEEEEEEEC
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEeec
Confidence 357889999999999999888776542 223478888886
No 114
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.50 E-value=0.055 Score=54.62 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=20.2
Q ss_pred HHcCCeEEEeccCCChhhchHHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
+..+..++|+|||||||||.+-..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l 45 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASM 45 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHH
Confidence 667888999999999999976544
No 115
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=92.34 E-value=0.07 Score=51.44 Aligned_cols=39 Identities=28% Similarity=0.216 Sum_probs=30.4
Q ss_pred cCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchh
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLR 383 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPr 383 (633)
.++..++.|+.||||||.+...+.... ..+.++++++|.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~-~~g~kV~v~k~~ 45 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAK-IAKQKIQVFKPE 45 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEEC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH-HCCCEEEEEEec
Confidence 356889999999999999988877652 233488888886
No 116
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.04 E-value=0.12 Score=50.44 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=28.2
Q ss_pred CChHHHHHHHHHHHcCCeEEEeccCCChhhchHHHH
Q 035699 330 PIYPFREELLQAVSEYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 330 Pi~~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
|-.--+..++..+..+..+.|.||+||||||.+-..
T Consensus 7 pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l 42 (208)
T 3b85_A 7 PKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAMAK 42 (208)
T ss_dssp CCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHHHHH
T ss_pred cCCHhHHHHHHhccCCCEEEEECCCCCCHHHHHHHH
Confidence 333345667888899999999999999999875443
No 117
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=91.80 E-value=0.2 Score=47.42 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=16.5
Q ss_pred CeEEEeccCCChhhchHHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~ 365 (633)
..+++.|++|||||+.+-..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i 74 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAI 74 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 78999999999999765433
No 118
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=91.62 E-value=0.071 Score=58.08 Aligned_cols=47 Identities=26% Similarity=0.197 Sum_probs=37.2
Q ss_pred HcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHH
Q 035699 343 SEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVS 395 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva 395 (633)
....+.+|.|+.|||||+.+...+. ..+++++.||+.++..+.+++.
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~------~~~~lVlTpT~~aa~~l~~kl~ 205 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVN------FEEDLILVPGRQAAEMIRRRAN 205 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCC------TTTCEEEESCHHHHHHHHHHHT
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhc------cCCeEEEeCCHHHHHHHHHHhh
Confidence 3456788999999999998865542 1368999999999988877663
No 119
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.42 E-value=0.17 Score=45.69 Aligned_cols=28 Identities=21% Similarity=0.350 Sum_probs=20.5
Q ss_pred HHHcCCeEEEeccCCChhhchHHHHHHHh
Q 035699 341 AVSEYPVLVIVGETGSGKTTQIPQYLYEA 369 (633)
Q Consensus 341 al~~~~~vIi~a~TGSGKTt~lp~~Lle~ 369 (633)
+...+..|++.|++|||||+. ...++..
T Consensus 20 ~a~~~~~vll~G~~GtGKt~l-A~~i~~~ 47 (145)
T 3n70_A 20 LSETDIAVWLYGAPGTGRMTG-ARYLHQF 47 (145)
T ss_dssp HTTCCSCEEEESSTTSSHHHH-HHHHHHS
T ss_pred HhCCCCCEEEECCCCCCHHHH-HHHHHHh
Confidence 345667799999999999954 4555554
No 120
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.32 E-value=0.1 Score=55.19 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=19.4
Q ss_pred HHcCCeEEEeccCCChhhchHHHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~L 366 (633)
...+..++|+|||||||||.+-..+
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~ 144 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAML 144 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHH
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3456689999999999999765443
No 121
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.30 E-value=0.087 Score=55.99 Aligned_cols=25 Identities=32% Similarity=0.600 Sum_probs=20.5
Q ss_pred HHcCCeEEEeccCCChhhchHHHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~L 366 (633)
+..+..++|+|||||||||.+-..+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~ 157 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMI 157 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHH
Confidence 4567889999999999999865544
No 122
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=91.24 E-value=0.16 Score=55.23 Aligned_cols=57 Identities=26% Similarity=0.366 Sum_probs=37.4
Q ss_pred CCeEEEeccCCChhhchHHHHHHHhccccCCee--eecchhHHHHHHHHHHHHHHhCCcc
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKI--GCTQLRRVAAMSVAARVSQEMGVKL 402 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gki--litqPrR~aA~qva~rva~e~g~~v 402 (633)
..+++++|++||||||.+........ ..+++| +.+.+.|.+|......++...|+.+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~-~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~ 155 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYK-KRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQV 155 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHH-HTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEecCccchhHHHHHHHHHHhcCCce
Confidence 46788999999999998665543321 123344 3456778777776666766666543
No 123
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.17 E-value=0.11 Score=50.48 Aligned_cols=38 Identities=26% Similarity=0.347 Sum_probs=27.2
Q ss_pred HHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeee
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGC 379 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkili 379 (633)
+..+..++|.|++|+|||+...+++.+.....+..+++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~ 64 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVF 64 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEE
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCcee
Confidence 34578999999999999988888776643333334544
No 124
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.11 E-value=0.11 Score=47.01 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=17.4
Q ss_pred HHHHcCCeEEEeccCCChhhch
Q 035699 340 QAVSEYPVLVIVGETGSGKTTQ 361 (633)
Q Consensus 340 ~al~~~~~vIi~a~TGSGKTt~ 361 (633)
.+...+..|++.|++|||||+.
T Consensus 22 ~~~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 22 AAAKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HHHTCSSCEEEEEETTCCHHHH
T ss_pred HHhCCCCcEEEECCCCccHHHH
Confidence 3445667899999999999953
No 125
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.89 E-value=0.11 Score=54.90 Aligned_cols=30 Identities=47% Similarity=0.567 Sum_probs=23.6
Q ss_pred HHHHHHHcCCeEEEeccCCChhhchHHHHH
Q 035699 337 ELLQAVSEYPVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 337 ~il~al~~~~~vIi~a~TGSGKTt~lp~~L 366 (633)
.+--.+..+..++|+|+|||||||.+-..+
T Consensus 167 ~l~~~i~~G~~i~ivG~sGsGKSTll~~l~ 196 (361)
T 2gza_A 167 FLRRAVQLERVIVVAGETGSGKTTLMKALM 196 (361)
T ss_dssp HHHHHHHTTCCEEEEESSSSCHHHHHHHHH
T ss_pred HHHHHHhcCCEEEEECCCCCCHHHHHHHHH
Confidence 344467788999999999999998765543
No 126
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.81 E-value=0.12 Score=57.25 Aligned_cols=29 Identities=38% Similarity=0.436 Sum_probs=22.8
Q ss_pred HHHHHHHcCCeEEEeccCCChhhchHHHH
Q 035699 337 ELLQAVSEYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 337 ~il~al~~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
.+--.+..+.+++|+|+|||||||.+-..
T Consensus 252 ~l~~~v~~g~~i~I~GptGSGKTTlL~aL 280 (511)
T 2oap_1 252 YLWLAIEHKFSAIVVGETASGKTTTLNAI 280 (511)
T ss_dssp HHHHHHHTTCCEEEEESTTSSHHHHHHHH
T ss_pred HHHHHHhCCCEEEEECCCCCCHHHHHHHH
Confidence 34445778889999999999999876543
No 127
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=90.77 E-value=0.12 Score=48.50 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=18.5
Q ss_pred cCCeEEEeccCCChhhchHHHHH
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~L 366 (633)
.+..++|+||+||||||.+-..+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~ 26 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLI 26 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999998765443
No 128
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.72 E-value=0.26 Score=53.21 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=19.2
Q ss_pred cCCeEEEeccCCChhhchHHHHHH
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~Ll 367 (633)
.+..++|+|||||||||.+-..+-
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHh
Confidence 456789999999999998765543
No 129
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=90.70 E-value=0.11 Score=49.13 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=18.7
Q ss_pred HcCCeEEEeccCCChhhchHHHH
Q 035699 343 SEYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
..+.++.+.||+||||||.+-..
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L 27 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRAL 27 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHHH
Confidence 46788999999999999875443
No 130
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=90.70 E-value=0.19 Score=54.76 Aligned_cols=57 Identities=23% Similarity=0.329 Sum_probs=37.8
Q ss_pred CCeEEEeccCCChhhchHHHHHHHhccccCCee--eecchhHHHHHHHHHHHHHHhCCcc
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKI--GCTQLRRVAAMSVAARVSQEMGVKL 402 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gki--litqPrR~aA~qva~rva~e~g~~v 402 (633)
..+++++|++|+||||.+........ ..+.++ +.+-|.|.+|.......+...|+++
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~-~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv 158 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQ-KRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEV 158 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEE
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHH-HCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcE
Confidence 45788999999999998665543321 122244 4467888888776666666666543
No 131
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=90.63 E-value=0.28 Score=50.71 Aligned_cols=57 Identities=21% Similarity=0.193 Sum_probs=34.2
Q ss_pred cCCeEEEeccCCChhhchHHHHHHHhccccCCeeee--cchhHHHHHHHHHHHHHHhCCc
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGC--TQLRRVAAMSVAARVSQEMGVK 401 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkili--tqPrR~aA~qva~rva~e~g~~ 401 (633)
.+.+++++|++||||||.+........ ..+++|++ .-+.|.++.......+..+|+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~-~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~ 161 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFV-DEGKSVVLAAADTFRAAAIEQLKIWGERVGAT 161 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEECTTCHHHHHHHHHHHHHHTCE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHH-hcCCEEEEEccccccHHHHHHHHHHHHHcCCc
Confidence 456888999999999998665543221 12345443 3566666554444455555543
No 132
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.57 E-value=0.26 Score=50.75 Aligned_cols=46 Identities=28% Similarity=0.307 Sum_probs=28.5
Q ss_pred HHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeee--cchhHHHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGC--TQLRRVAAM 388 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkili--tqPrR~aA~ 388 (633)
+..+.++.++|++||||||.+-....... ..+|+|.+ ..+.|..|.
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~-~~~g~V~l~g~d~~r~~a~ 144 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLK-NEGTKVLMAAGDTFRAAAS 144 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEECCCCSCHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEEEeecccchhHH
Confidence 34567899999999999998665433221 23455544 334455553
No 133
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=90.56 E-value=0.19 Score=52.52 Aligned_cols=57 Identities=25% Similarity=0.259 Sum_probs=33.8
Q ss_pred HcCCeEEEeccCCChhhchHHHHHHHhccccCCeeee--cchhHHHHHHHHHHHHHHhCC
Q 035699 343 SEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGC--TQLRRVAAMSVAARVSQEMGV 400 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkili--tqPrR~aA~qva~rva~e~g~ 400 (633)
..+.++.++|++||||||.+-....... ..+|+|++ ..+.|..+.......+...|+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~-~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLK-NHGFSVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCCEEEEEeecccccchHHHHHHHHHHcCc
Confidence 3567899999999999997655433221 22344443 334455555444445565554
No 134
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=90.52 E-value=0.095 Score=49.62 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=18.4
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..+..++++|++||||||.+-.
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~ 25 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKR 25 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHH
Confidence 34677899999999999987644
No 135
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=90.33 E-value=0.22 Score=45.50 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=16.7
Q ss_pred CCeEEEeccCCChhhchHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~ 365 (633)
...++++|++|+|||+.+-.+
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~ 63 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGL 63 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHH
Confidence 467999999999999765433
No 136
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=90.32 E-value=0.11 Score=49.89 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=18.6
Q ss_pred HHHcCCeEEEeccCCChhhchHHH
Q 035699 341 AVSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 341 al~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
.+..+.++.|.||+||||||.+-.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~ 39 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRC 39 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHH
Confidence 678899999999999999987543
No 137
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=90.19 E-value=0.19 Score=51.56 Aligned_cols=57 Identities=26% Similarity=0.329 Sum_probs=33.2
Q ss_pred cCCeEEEeccCCChhhchHHHHHHHhccccCCeeee--cchhHHHHHHHHHHHHHHhCC
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGC--TQLRRVAAMSVAARVSQEMGV 400 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkili--tqPrR~aA~qva~rva~e~g~ 400 (633)
.+.+++++|++|+||||.+...........+.+|++ .-|.|..+.......+..+|+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl 162 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQA 162 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCC
Confidence 467899999999999998665543321112224443 445565555444434444443
No 138
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=90.16 E-value=0.068 Score=49.94 Aligned_cols=22 Identities=36% Similarity=0.693 Sum_probs=18.5
Q ss_pred HcCCeEEEeccCCChhhchHHH
Q 035699 343 SEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
..+..+.++|++||||||.+-.
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 3567899999999999998764
No 139
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.15 E-value=0.11 Score=50.50 Aligned_cols=26 Identities=35% Similarity=0.588 Sum_probs=21.8
Q ss_pred HHHcCCeEEEeccCCChhhchHHHHH
Q 035699 341 AVSEYPVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 341 al~~~~~vIi~a~TGSGKTt~lp~~L 366 (633)
.+..+.++.|.||+||||||.+-..+
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 45678999999999999999776555
No 140
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=89.95 E-value=0.22 Score=45.63 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=17.4
Q ss_pred CCeEEEeccCCChhhchHHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~L 366 (633)
...++++|++|+|||+.+-.+.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~ 64 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLA 64 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHH
Confidence 5679999999999997654443
No 141
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=89.82 E-value=0.16 Score=54.66 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=30.6
Q ss_pred CCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAA 387 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA 387 (633)
+.+++|.|+||||||+.+...+... ...+..++|+-|..+..
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~-~~~g~~viv~Dpkge~~ 94 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTG-LLRGDRMVIVDPNGDML 94 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHH-HHTTCEEEEEEETTHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHH-HHCCCcEEEEeCCCchh
Confidence 4568999999999999764444332 33455899999988775
No 142
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=89.71 E-value=0.16 Score=48.83 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=18.7
Q ss_pred cCCeEEEeccCCChhhchHHHHH
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~L 366 (633)
.+..++++||+||||||.+-..+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~ 29 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVF 29 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHH
Confidence 56789999999999998765443
No 143
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=89.48 E-value=0.084 Score=49.48 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=19.1
Q ss_pred HHcCCeEEEeccCCChhhchHHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
+..+.+++++|++||||||.+-..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~L 29 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEAL 29 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHH
Confidence 446778999999999999875443
No 144
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=89.47 E-value=0.15 Score=49.42 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=26.6
Q ss_pred HHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeec
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCT 380 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilit 380 (633)
+..+.+++|.|++||||||.+.+++.... ..++++++.
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~-~~~~~v~~~ 57 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGL-KMGEPGIYV 57 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEE
Confidence 45678999999999999998777765442 233355543
No 145
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=89.39 E-value=0.16 Score=48.63 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=16.8
Q ss_pred cCCeEEEeccCCChhhchHHHH
Q 035699 344 EYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
.++.++|+||+||||||.+-..
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L 24 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKL 24 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4567899999999999876543
No 146
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=89.34 E-value=0.16 Score=48.38 Aligned_cols=27 Identities=26% Similarity=0.123 Sum_probs=22.2
Q ss_pred HHHcCCeEEEeccCCChhhchHHHHHH
Q 035699 341 AVSEYPVLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 341 al~~~~~vIi~a~TGSGKTt~lp~~Ll 367 (633)
-+..+..++|.|++||||||.+.+++.
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 345678999999999999998777765
No 147
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=89.23 E-value=0.2 Score=52.18 Aligned_cols=25 Identities=36% Similarity=0.506 Sum_probs=20.4
Q ss_pred HHHHcCCeEEEeccCCChhhchHHH
Q 035699 340 QAVSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 340 ~al~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
-.+..+.+++|+|+|||||||.+-.
T Consensus 166 ~~i~~g~~v~i~G~~GsGKTTll~~ 190 (330)
T 2pt7_A 166 DGIAIGKNVIVCGGTGSGKTTYIKS 190 (330)
T ss_dssp HHHHHTCCEEEEESTTSCHHHHHHH
T ss_pred hhccCCCEEEEECCCCCCHHHHHHH
Confidence 4566788999999999999986543
No 148
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.19 E-value=0.18 Score=51.18 Aligned_cols=43 Identities=21% Similarity=0.269 Sum_probs=28.7
Q ss_pred HHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeee
Q 035699 337 ELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGC 379 (633)
Q Consensus 337 ~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkili 379 (633)
.+.--+..+..++|.|++||||||.+.+.+.......+.+|++
T Consensus 27 ~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~ 69 (296)
T 1cr0_A 27 DKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGL 69 (296)
T ss_dssp HHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEE
T ss_pred HHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEE
Confidence 3334466789999999999999998776654432222325544
No 149
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=89.17 E-value=0.35 Score=45.81 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=17.3
Q ss_pred CeEEEeccCCChhhchHHHHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~Ll 367 (633)
..++|.|++|+|||+.+-.+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999987654443
No 150
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=89.17 E-value=0.18 Score=49.07 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=18.8
Q ss_pred HHcCCeEEEeccCCChhhchHHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
+..+..+.|+||+||||||.+-..
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L 43 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKL 43 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHH
Confidence 567888999999999999876543
No 151
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=88.88 E-value=0.2 Score=47.23 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=17.1
Q ss_pred CCeEEEeccCCChhhchHHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~L 366 (633)
+++++++||+||||||.+-..+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~ 22 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3568899999999998755443
No 152
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=88.83 E-value=1.4 Score=42.54 Aligned_cols=76 Identities=12% Similarity=0.129 Sum_probs=54.6
Q ss_pred CCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCcc------cc
Q 035699 516 EPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIA------ET 589 (633)
Q Consensus 516 ~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIA------er 589 (633)
...+.+||.+|+++-+...++.+.... ...+++.+..+||+.+...+...+. ...|+|+|+-. ..
T Consensus 90 ~~~~~~lil~Pt~~L~~q~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~Iiv~Tp~~l~~~~~~~ 160 (230)
T 2oxc_A 90 NLSTQILILAPTREIAVQIHSVITAIG----IKMEGLECHVFIGGTPLSQDKTRLK-----KCHIAVGSPGRIKQLIELD 160 (230)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHT----TTSTTCCEEEECTTSCHHHHHHHTT-----SCSEEEECHHHHHHHHHTT
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHh----cccCCceEEEEeCCCCHHHHHHhcc-----CCCEEEECHHHHHHHHhcC
Confidence 345689999999999999999887753 2234678899999998887776664 25799999721 23
Q ss_pred CCCCCCccEEE
Q 035699 590 SLTIDGIKYVI 600 (633)
Q Consensus 590 GLdIp~V~~VI 600 (633)
.+...++++||
T Consensus 161 ~~~~~~~~~lV 171 (230)
T 2oxc_A 161 YLNPGSIRLFI 171 (230)
T ss_dssp SSCGGGCCEEE
T ss_pred CcccccCCEEE
Confidence 45556665444
No 153
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=88.69 E-value=0.53 Score=54.84 Aligned_cols=78 Identities=12% Similarity=0.047 Sum_probs=63.8
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCc-cccCCCCCCc
Q 035699 518 IGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNI-AETSLTIDGI 596 (633)
Q Consensus 518 ~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdI-AerGLdIp~V 596 (633)
.+++||.+||..-+...++.+...+.. .++.+..+||+++...+..++.....|...|||+|.- +...+.+.++
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~-----~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l 491 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSK-----FNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNL 491 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTC-----SSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCC
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhh-----cCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCC
Confidence 468999999999999999999887532 2578999999999999988888888888999999963 3345677888
Q ss_pred cEEE
Q 035699 597 KYVI 600 (633)
Q Consensus 597 ~~VI 600 (633)
.+||
T Consensus 492 ~lVV 495 (780)
T 1gm5_A 492 GLVI 495 (780)
T ss_dssp CEEE
T ss_pred ceEE
Confidence 7765
No 154
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=88.61 E-value=0.44 Score=50.44 Aligned_cols=46 Identities=28% Similarity=0.320 Sum_probs=28.2
Q ss_pred HHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeee-c-chhHHHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGC-T-QLRRVAAM 388 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkili-t-qPrR~aA~ 388 (633)
+..+.++.++|++||||||.+-....... ..+|+|++ . .+.|.+|.
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~-~~~G~V~l~g~D~~r~~a~ 201 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLK-NEGTKVLMAAGDTFRAAAS 201 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEECCCCSCHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhcc-ccCCEEEEecccccccchh
Confidence 34567899999999999998665433221 22455544 2 34455543
No 155
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=88.45 E-value=0.23 Score=45.01 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=15.8
Q ss_pred eEEEeccCCChhhchHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~ 365 (633)
+++++|++||||||..-..
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6889999999999876544
No 156
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=88.40 E-value=0.25 Score=47.85 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=22.6
Q ss_pred HHcCCeEEEeccCCChhhchHHHHHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQYLYE 368 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~Lle 368 (633)
+..+.+++|.|++||||||.+.+++..
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 446789999999999999988777664
No 157
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=88.24 E-value=0.52 Score=48.49 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=17.1
Q ss_pred CCeEEEeccCCChhhchHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~ 365 (633)
+..+++.||||+|||+.+-.+
T Consensus 152 ~~~lll~G~~GtGKT~La~ai 172 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAM 172 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 578999999999999765433
No 158
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=88.14 E-value=0.29 Score=46.54 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=18.7
Q ss_pred HHcCCeEEEeccCCChhhchHHHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~L 366 (633)
+..+..++++|++||||||..-...
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3456789999999999998755443
No 159
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=88.07 E-value=0.17 Score=49.30 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=15.6
Q ss_pred HHcCCeEEEeccCCChhhchHHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
+..+.++.|+||+||||||.+-..
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L 47 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKL 47 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHH
Confidence 456788999999999999976543
No 160
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=87.99 E-value=0.31 Score=50.46 Aligned_cols=38 Identities=13% Similarity=0.231 Sum_probs=26.0
Q ss_pred HHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecc
Q 035699 340 QAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQ 381 (633)
Q Consensus 340 ~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitq 381 (633)
-.+..++.+.|+||+||||||.+-..+-- + .|.|++..
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl--~--~G~I~~~v 158 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHF--L--GGSVLSFA 158 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHHHH--H--TCEEECGG
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHhhh--c--CceEEEEe
Confidence 34567899999999999999875544321 1 45665443
No 161
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=87.95 E-value=2.5 Score=39.56 Aligned_cols=76 Identities=12% Similarity=0.156 Sum_probs=53.3
Q ss_pred CCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCC-----ccc-cC
Q 035699 517 PIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATN-----IAE-TS 590 (633)
Q Consensus 517 ~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATd-----IAe-rG 590 (633)
....+||.+|++.-+..+++.+..... ..+++.+..++|+.+...+...+. +...|+|+|+ ... ..
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~ 141 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSK----HMGGAKVMATTGGTNLRDDIMRLD----DTVHVVIATPGRILDLIKKGV 141 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTT----TSSSCCEEEECSSSCHHHHHHHTT----SCCSEEEECHHHHHHHHHTTC
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHh----hcCCceEEEEeCCccHHHHHHhcC----CCCCEEEeCHHHHHHHHHcCC
Confidence 345799999999999999998877532 234678889999988776655443 2357999997 222 23
Q ss_pred CCCCCccEEE
Q 035699 591 LTIDGIKYVI 600 (633)
Q Consensus 591 LdIp~V~~VI 600 (633)
+...++++||
T Consensus 142 ~~~~~~~~lV 151 (206)
T 1vec_A 142 AKVDHVQMIV 151 (206)
T ss_dssp SCCTTCCEEE
T ss_pred cCcccCCEEE
Confidence 4556666555
No 162
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=87.94 E-value=0.36 Score=49.76 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=18.6
Q ss_pred cCCeEEEeccCCChhhchHHHHH
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~L 366 (633)
.+.++.++|++||||||.+-...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 35789999999999999866543
No 163
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=87.94 E-value=0.28 Score=48.18 Aligned_cols=39 Identities=15% Similarity=0.005 Sum_probs=30.1
Q ss_pred CCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhH
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRR 384 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR 384 (633)
+...+++|+-||||||.+...+.... ..+.++++++|..
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~-~~g~kVli~k~~~ 66 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQ-FAKQHAIVFKPCI 66 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH-HTTCCEEEEECC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH-HCCCEEEEEEecc
Confidence 56778899999999999998887652 3334889988865
No 164
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=87.81 E-value=1.8 Score=41.25 Aligned_cols=75 Identities=16% Similarity=0.252 Sum_probs=54.0
Q ss_pred CCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCc-----c-ccCCC
Q 035699 519 GDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNI-----A-ETSLT 592 (633)
Q Consensus 519 g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdI-----A-erGLd 592 (633)
..+||.+|++.-+..+++.+.... ...+++.+..+||+.+...+...+.. +...|+|+|+= . ...+.
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~----~~~~~~~v~~~~g~~~~~~~~~~~~~---~~~~i~v~T~~~l~~~~~~~~~~ 155 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFS----KYMPNVKVAVFFGGLSIKKDEEVLKK---NCPHIVVGTPGRILALARNKSLN 155 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHT----TTSTTCCEEEESCCSCHHHHHHHHHH---SCCSEEEECHHHHHHHHHTTSSC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHH----hhCCCceEEEEeCCCChHHHHHHHhc---CCCCEEEeCHHHHHHHHHhCCCC
Confidence 489999999999999998887753 22346789999999987776655532 34579999952 1 23456
Q ss_pred CCCccEEE
Q 035699 593 IDGIKYVI 600 (633)
Q Consensus 593 Ip~V~~VI 600 (633)
..++++||
T Consensus 156 ~~~~~~lV 163 (220)
T 1t6n_A 156 LKHIKHFI 163 (220)
T ss_dssp CTTCCEEE
T ss_pred cccCCEEE
Confidence 67777655
No 165
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=87.78 E-value=0.52 Score=44.12 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=15.9
Q ss_pred eEEEeccCCChhhchHHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~L 366 (633)
.+++.|++|+|||+.+-.+.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~ 59 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALA 59 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 49999999999997654443
No 166
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=87.78 E-value=0.21 Score=48.95 Aligned_cols=25 Identities=16% Similarity=0.410 Sum_probs=18.8
Q ss_pred HHHcCCeEEEeccCCChhhchHHHH
Q 035699 341 AVSEYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 341 al~~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
.+..+..++|+||+||||||.+-..
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L 36 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQAL 36 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHH
Confidence 4567889999999999999876543
No 167
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=87.68 E-value=0.54 Score=44.97 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=18.8
Q ss_pred cCCeEEEeccCCChhhchHHHHHH
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~Ll 367 (633)
.+..+++.||+|||||+.+-.+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999986654443
No 168
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=87.52 E-value=0.22 Score=46.22 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=17.1
Q ss_pred CCeEEEeccCCChhhchHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~ 365 (633)
+..++|+|++||||||+.-..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L 23 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLA 23 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 467899999999999875443
No 169
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=87.26 E-value=0.28 Score=46.89 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=21.1
Q ss_pred HHcCCeEEEeccCCChhhchHHHHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~Ll 367 (633)
+..+.+++|.|++||||||.+-+++.
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 45678899999999999987766653
No 170
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=87.15 E-value=0.17 Score=50.02 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=18.6
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..+..+.|.||+||||||.+-.
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~ 50 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNI 50 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHH
Confidence 34678899999999999987543
No 171
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=87.14 E-value=0.31 Score=47.20 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=18.9
Q ss_pred cCCeEEEeccCCChhhchHHHHH
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~L 366 (633)
.++.++|+||+||||||.+-..+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~ 40 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALL 40 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHH
Confidence 57789999999999998765544
No 172
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=87.09 E-value=0.56 Score=46.44 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=19.2
Q ss_pred HcCCeEEEeccCCChhhchHHHHHHHh
Q 035699 343 SEYPVLVIVGETGSGKTTQIPQYLYEA 369 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~lp~~Lle~ 369 (633)
..+..+++.|++|||||+ +...++..
T Consensus 27 ~~~~~vll~G~~GtGKt~-la~~i~~~ 52 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKEL-IASRLHYL 52 (265)
T ss_dssp TSCSCEEEECCTTSCHHH-HHHHHHHT
T ss_pred CCCCCEEEECCCCCcHHH-HHHHHHHh
Confidence 345679999999999995 44555554
No 173
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=87.08 E-value=0.26 Score=48.38 Aligned_cols=28 Identities=29% Similarity=0.477 Sum_probs=21.5
Q ss_pred HHcCCeEEEeccCCChhhchHHHHHHHh
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQYLYEA 369 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~Lle~ 369 (633)
+...++++|.||+||||+|+.-......
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4455788999999999999876655444
No 174
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=86.96 E-value=0.25 Score=46.96 Aligned_cols=22 Identities=36% Similarity=0.433 Sum_probs=18.2
Q ss_pred cCCeEEEeccCCChhhchHHHH
Q 035699 344 EYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
.+.+++|+|++||||||.+-..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L 49 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGV 49 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4678999999999999875544
No 175
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=86.87 E-value=0.38 Score=44.70 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=17.4
Q ss_pred CCeEEEeccCCChhhchHHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~L 366 (633)
...++++|++||||||..-...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999998755443
No 176
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=86.82 E-value=0.24 Score=45.42 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=16.8
Q ss_pred CCeEEEeccCCChhhchHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~ 365 (633)
+.+++|+|+.||||||..-..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~L 24 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQL 24 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 457899999999999875443
No 177
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=86.77 E-value=0.31 Score=44.58 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=18.2
Q ss_pred cCCeEEEeccCCChhhchHHHH
Q 035699 344 EYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
.++.+++.|++|||||+.+-..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i 56 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAW 56 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 6788999999999999865443
No 178
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=86.66 E-value=0.19 Score=48.23 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=21.8
Q ss_pred HHHcCCeEEEeccCCChhhchHHHHHH
Q 035699 341 AVSEYPVLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 341 al~~~~~vIi~a~TGSGKTt~lp~~Ll 367 (633)
-+..+..+.|.||+||||||.+-..+.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 345678999999999999988766654
No 179
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=86.46 E-value=0.4 Score=43.67 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=16.3
Q ss_pred eEEEeccCCChhhchHHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~L 366 (633)
.++|+|+.||||||..-...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999998765443
No 180
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=86.36 E-value=0.26 Score=45.29 Aligned_cols=20 Identities=30% Similarity=0.695 Sum_probs=16.1
Q ss_pred eEEEeccCCChhhchHHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~L 366 (633)
.++++|++||||||+.-...
T Consensus 4 ~I~i~G~~GsGKST~a~~L~ 23 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFI 23 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHH
Confidence 58899999999998764433
No 181
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=86.26 E-value=0.38 Score=46.71 Aligned_cols=24 Identities=42% Similarity=0.663 Sum_probs=18.9
Q ss_pred eEEEeccCCChhhchHHHHHHHhc
Q 035699 347 VLVIVGETGSGKTTQIPQYLYEAG 370 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~Lle~~ 370 (633)
++++.||+||||+|+.-......+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478889999999999776655543
No 182
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=86.09 E-value=0.45 Score=50.31 Aligned_cols=41 Identities=17% Similarity=0.261 Sum_probs=29.4
Q ss_pred cCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHH
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRV 385 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~ 385 (633)
.+.+++|.|+||||||+.+-..+... ...++++++.-|...
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~-~~~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE-YMQGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH-HTTTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH-HHCCCEEEEEeCCcC
Confidence 45678999999999998765554433 344558888888654
No 183
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=85.96 E-value=0.67 Score=47.56 Aligned_cols=56 Identities=32% Similarity=0.428 Sum_probs=34.1
Q ss_pred CCeEEEeccCCChhhchHHHHHHHhccccCCeeee--cchhHHHHHHHHHHHHHHhCCc
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGC--TQLRRVAAMSVAARVSQEMGVK 401 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkili--tqPrR~aA~qva~rva~e~g~~ 401 (633)
+.+++++|++|+||||.+........ ..++++++ .-|.|.++.......+...|+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~-~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~ 155 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK-KKGFKVGLVGADVYRPAALEQLQQLGQQIGVP 155 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH-HTTCCEEEEECCCSSSHHHHHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEecCCCCHHHHHHHHHHhccCCeE
Confidence 55788899999999997665543321 22344443 5666666655444455555544
No 184
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=85.92 E-value=0.22 Score=49.33 Aligned_cols=23 Identities=26% Similarity=0.621 Sum_probs=18.7
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++.+.|.|++||||||.+-.
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~ 50 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSA 50 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHHH
Confidence 34677899999999999987643
No 185
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=85.79 E-value=0.37 Score=45.92 Aligned_cols=24 Identities=38% Similarity=0.630 Sum_probs=18.9
Q ss_pred HHcCCeEEEeccCCChhhchHHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
+..+..++++|++||||||..-..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L 32 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKV 32 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHHH
Confidence 345678999999999999865443
No 186
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=85.71 E-value=0.59 Score=47.12 Aligned_cols=19 Identities=32% Similarity=0.396 Sum_probs=15.5
Q ss_pred CCeEEEeccCCChhhchHH
Q 035699 345 YPVLVIVGETGSGKTTQIP 363 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp 363 (633)
...+++.||+|||||+.+-
T Consensus 67 ~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3469999999999997643
No 187
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=85.65 E-value=0.23 Score=46.52 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=16.7
Q ss_pred CeEEEeccCCChhhchHHHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~L 366 (633)
.+++++|++||||||.+-...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~ 23 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLA 23 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHh
Confidence 467889999999998765443
No 188
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=85.65 E-value=0.31 Score=44.95 Aligned_cols=20 Identities=15% Similarity=0.371 Sum_probs=16.2
Q ss_pred CCeEEEeccCCChhhchHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++++|+.||||||..-.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~ 22 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRC 22 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 45789999999999976543
No 189
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=85.62 E-value=0.26 Score=46.92 Aligned_cols=21 Identities=43% Similarity=0.387 Sum_probs=16.9
Q ss_pred cCCeEEEeccCCChhhchHHH
Q 035699 344 EYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~ 364 (633)
.+..+.|.|++||||||.+-.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~ 25 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQA 25 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHH
Confidence 456788999999999987543
No 190
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=85.61 E-value=0.27 Score=45.37 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=17.0
Q ss_pred CCeEEEeccCCChhhchHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~ 365 (633)
+.+++++|+.||||||.+-..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l 28 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEV 28 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHH
Confidence 467899999999999875443
No 191
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=85.49 E-value=0.71 Score=50.91 Aligned_cols=44 Identities=27% Similarity=0.250 Sum_probs=27.8
Q ss_pred HcCCeEEEeccCCChhhchHHHHHHHhccccCCeeee--cchhHHHH
Q 035699 343 SEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGC--TQLRRVAA 387 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkili--tqPrR~aA 387 (633)
..+.++.|+|++||||||.+-...... ...+|+|++ ..+.|.++
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll-~~~~G~V~l~g~D~~r~aa 336 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF-EQQGKSVMLAAGDTFRAAA 336 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH-HHTTCCEEEECCCTTCHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh-hhcCCeEEEecCcccchhh
Confidence 456789999999999999866543322 123455655 34445543
No 192
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=85.38 E-value=0.55 Score=43.81 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=19.5
Q ss_pred HHcCCeEEEeccCCChhhchHHHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~L 366 (633)
+.....++++|++||||||+.-...
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHH
Confidence 3456789999999999999765443
No 193
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=85.34 E-value=0.49 Score=43.85 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=18.3
Q ss_pred cCCeEEEeccCCChhhchHHHHH
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~L 366 (633)
...+++++|++||||||+.-...
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 45679999999999998765443
No 194
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=85.33 E-value=0.36 Score=46.29 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=17.1
Q ss_pred HcCCeEEEeccCCChhhchHH
Q 035699 343 SEYPVLVIVGETGSGKTTQIP 363 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~lp 363 (633)
..+..+.|.|++||||||.+-
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~ 40 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSN 40 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 346788899999999998753
No 195
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=85.31 E-value=0.96 Score=48.91 Aligned_cols=58 Identities=24% Similarity=0.261 Sum_probs=35.5
Q ss_pred cCCeEEEeccCCChhhchHHHHHHHhccccCCeee--ecchhHHHHHHHHHHHHHHhCCcc
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIG--CTQLRRVAAMSVAARVSQEMGVKL 402 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkil--itqPrR~aA~qva~rva~e~g~~v 402 (633)
.+.+++++|++||||||.+........ ..+++|+ -+-|.+.++......++...|+.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~-~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v 156 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK-GKGRRPLLVAADTQRPAAREQLRLLGEKVGVPV 156 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEeeccccCchhHHHHHHhcccCCccE
Confidence 456788889999999997655443321 2234444 356777777654444555566543
No 196
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=85.27 E-value=4.4 Score=39.31 Aligned_cols=74 Identities=19% Similarity=0.262 Sum_probs=54.1
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCC-----ccc-cCC
Q 035699 518 IGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATN-----IAE-TSL 591 (633)
Q Consensus 518 ~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATd-----IAe-rGL 591 (633)
.+.+||.+|+++-+..+++.+...... .++.+..+||+.+...+...+.. ...|||+|+ ... ..+
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~ 172 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRA-----CRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKT 172 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHH-----TTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhh-----cCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCC
Confidence 467999999999999999888876433 25788899999998877666543 257999995 332 234
Q ss_pred CCCCccEEE
Q 035699 592 TIDGIKYVI 600 (633)
Q Consensus 592 dIp~V~~VI 600 (633)
++.++.+||
T Consensus 173 ~~~~~~~lV 181 (242)
T 3fe2_A 173 NLRRTTYLV 181 (242)
T ss_dssp CCTTCCEEE
T ss_pred CcccccEEE
Confidence 566776554
No 197
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=85.27 E-value=0.44 Score=47.48 Aligned_cols=20 Identities=40% Similarity=0.370 Sum_probs=15.9
Q ss_pred eEEEeccCCChhhchHHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~L 366 (633)
+++|+|+|||||||..-...
T Consensus 3 li~I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 57899999999998654443
No 198
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=85.22 E-value=0.23 Score=48.72 Aligned_cols=23 Identities=35% Similarity=0.510 Sum_probs=18.6
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..+.++.|.||+||||||.+-.
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~ 49 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYI 49 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 34677899999999999987643
No 199
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=85.19 E-value=2.4 Score=40.35 Aligned_cols=74 Identities=12% Similarity=0.117 Sum_probs=46.1
Q ss_pred CCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCc------cccC
Q 035699 517 PIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNI------AETS 590 (633)
Q Consensus 517 ~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdI------AerG 590 (633)
..+.+||.+|++.-+..+++.+...... .++.+..+||+.+...+...+.. ..|+|+|+- ....
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~-----~~iiv~Tp~~l~~~~~~~~ 150 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFH-----MDIKVHACIGGTSFVEDAEGLRD-----AQIVVGTPGRVFDNIQRRR 150 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTT-----SCCCEEEECC----------CTT-----CSEEEECHHHHHHHHHTTS
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcc-----cCceEEEEeCCcchHHHHhcCCC-----CCEEEECHHHHHHHHHhCC
Confidence 3468999999999999999988875422 36778889999876655544432 579999962 2335
Q ss_pred CCCCCccEEE
Q 035699 591 LTIDGIKYVI 600 (633)
Q Consensus 591 LdIp~V~~VI 600 (633)
+...++.+||
T Consensus 151 ~~~~~~~~iV 160 (224)
T 1qde_A 151 FRTDKIKMFI 160 (224)
T ss_dssp SCCTTCCEEE
T ss_pred cchhhCcEEE
Confidence 5566676655
No 200
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=85.19 E-value=0.53 Score=43.68 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=19.0
Q ss_pred HcCCeEEEeccCCChhhchHHHH
Q 035699 343 SEYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
..+.++.+.||.||||||.+-..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l 53 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGM 53 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
Confidence 67888999999999999865443
No 201
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=85.08 E-value=0.37 Score=50.22 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=17.0
Q ss_pred CCeEEEeccCCChhhchHHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~L 366 (633)
..+++|+||||||||+......
T Consensus 3 ~~~i~i~GptgsGKt~la~~La 24 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLA 24 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHH
Confidence 4578899999999997655443
No 202
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=85.03 E-value=0.25 Score=50.29 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=19.3
Q ss_pred HHcCCeEEEeccCCChhhchHHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
+..+.++.|.||+||||||.+-..
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l 54 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNF 54 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 456788999999999999876533
No 203
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=84.98 E-value=0.48 Score=48.62 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=22.5
Q ss_pred HHHHHHHHHHcCCeEEEeccCCChhhchHH
Q 035699 334 FREELLQAVSEYPVLVIVGETGSGKTTQIP 363 (633)
Q Consensus 334 ~q~~il~al~~~~~vIi~a~TGSGKTt~lp 363 (633)
....++.++..+..+++.||+|+|||+.+-
T Consensus 35 ~~~~l~~~l~~~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 35 MINRLLIGICTGGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HHHHHHHHHHHTCCEEEESCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEEECCCCCcHHHHHH
Confidence 344555666677789999999999996543
No 204
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=84.95 E-value=0.24 Score=48.40 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=18.5
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++++.|.||+||||||.+-.
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~ 54 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKT 54 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 34677899999999999987643
No 205
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=84.77 E-value=0.26 Score=49.34 Aligned_cols=23 Identities=43% Similarity=0.595 Sum_probs=18.8
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..+.++.|.||+||||||.+=.
T Consensus 30 i~~Ge~~~liG~nGsGKSTLlk~ 52 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLINV 52 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHHHH
T ss_pred EeCCCEEEEECCCCCCHHHHHHH
Confidence 45678899999999999987643
No 206
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=84.72 E-value=0.41 Score=44.47 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=17.5
Q ss_pred CCeEEEeccCCChhhchHHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~L 366 (633)
+..++++|+.||||||+.-...
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4568899999999999865543
No 207
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=84.60 E-value=0.27 Score=48.72 Aligned_cols=23 Identities=30% Similarity=0.629 Sum_probs=18.7
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..+.++.|.||+||||||.+-.
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~ 51 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSA 51 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 34677899999999999987643
No 208
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=84.58 E-value=0.54 Score=46.75 Aligned_cols=40 Identities=23% Similarity=0.173 Sum_probs=31.5
Q ss_pred cCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhH
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRR 384 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR 384 (633)
.++..+++|+-||||||.+...++... ..+.++++.+|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~-~~g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQ-IAQYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH-TTTCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHH-HCCCeEEEEeecC
Confidence 467888999999999999998887652 3334888888864
No 209
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=84.54 E-value=0.69 Score=43.22 Aligned_cols=25 Identities=32% Similarity=0.602 Sum_probs=18.9
Q ss_pred HHcCCeEEEeccCCChhhchHHHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~L 366 (633)
+.....++++|++||||||+.-...
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~ 33 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLV 33 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3345689999999999998764443
No 210
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=84.51 E-value=0.28 Score=48.31 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=18.7
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..+..+.|.||+||||||.+-.
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~ 53 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMM 53 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 34678899999999999987643
No 211
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=84.50 E-value=0.28 Score=49.37 Aligned_cols=23 Identities=35% Similarity=0.513 Sum_probs=18.7
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..+.++.|.||+||||||.+-.
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~ 51 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRC 51 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 44677899999999999987643
No 212
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=84.49 E-value=3.9 Score=40.12 Aligned_cols=76 Identities=14% Similarity=0.157 Sum_probs=54.1
Q ss_pred CCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCC-----ccc--
Q 035699 516 EPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATN-----IAE-- 588 (633)
Q Consensus 516 ~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATd-----IAe-- 588 (633)
.....+||.+|++.-+..+++.+...... .++.+..++|+.+...+...+. +...|+|+|+ ...
T Consensus 109 ~~~~~~lil~Ptr~L~~q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~Tp~~l~~~l~~~ 179 (249)
T 3ber_A 109 PQRLFALVLTPTRELAFQISEQFEALGSS-----IGVQSAVIVGGIDSMSQSLALA----KKPHIIIATPGRLIDHLENT 179 (249)
T ss_dssp CCSSCEEEECSSHHHHHHHHHHHHHHHGG-----GTCCEEEECTTSCHHHHHHHHH----TCCSEEEECHHHHHHHHHHS
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHhcc-----CCeeEEEEECCCChHHHHHHhc----CCCCEEEECHHHHHHHHHcC
Confidence 33467999999999999999888776432 2567888999988776655543 2357999995 222
Q ss_pred cCCCCCCccEEE
Q 035699 589 TSLTIDGIKYVI 600 (633)
Q Consensus 589 rGLdIp~V~~VI 600 (633)
.++.+.++++||
T Consensus 180 ~~~~l~~~~~lV 191 (249)
T 3ber_A 180 KGFNLRALKYLV 191 (249)
T ss_dssp TTCCCTTCCEEE
T ss_pred CCcCccccCEEE
Confidence 356677777555
No 213
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=84.44 E-value=0.57 Score=42.89 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=16.7
Q ss_pred CeEEEeccCCChhhchHHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~ 365 (633)
|+++|.|..||||||+.-..
T Consensus 8 ~~i~l~G~~GsGKSTva~~L 27 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQEL 27 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 78999999999999875433
No 214
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=84.42 E-value=0.28 Score=48.93 Aligned_cols=23 Identities=39% Similarity=0.543 Sum_probs=18.9
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++.+.|.|++||||||.+-.
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~ 54 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKL 54 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 44678899999999999987654
No 215
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=84.35 E-value=0.29 Score=49.22 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=19.4
Q ss_pred HHcCCeEEEeccCCChhhchHHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
+..++.+.|.||+||||||.+-..
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l 66 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLL 66 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHHHH
Confidence 456788999999999999876543
No 216
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=84.23 E-value=0.42 Score=50.16 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=17.0
Q ss_pred CCeEEEeccCCChhhchHHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~L 366 (633)
+.+++|+||||||||+......
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA 61 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLA 61 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 3578999999999997654443
No 217
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=84.19 E-value=0.52 Score=45.61 Aligned_cols=39 Identities=23% Similarity=0.162 Sum_probs=29.8
Q ss_pred cCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchh
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLR 383 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPr 383 (633)
.++..++.|+.||||||.+.+.+...... +.+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~-~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIA-QYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT-TCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEccc
Confidence 35788999999999999998887765332 3477777775
No 218
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=84.12 E-value=0.4 Score=52.02 Aligned_cols=44 Identities=7% Similarity=0.132 Sum_probs=30.3
Q ss_pred HHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeec
Q 035699 337 ELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCT 380 (633)
Q Consensus 337 ~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilit 380 (633)
.++.-+..+..++|.|++|+||||.+.+++.......+.+|++.
T Consensus 195 ~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~ 238 (454)
T 2r6a_A 195 RMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIF 238 (454)
T ss_dssp HHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEE
T ss_pred hhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 33444667899999999999999988777665433223356553
No 219
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=84.05 E-value=0.26 Score=48.95 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=18.7
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..+..+.|.|++||||||.+-.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~ 47 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSL 47 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 34677899999999999987644
No 220
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=83.99 E-value=0.3 Score=49.38 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=18.8
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..+..+.|.||+||||||.+-.
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~ 56 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRL 56 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHH
Confidence 45678899999999999987643
No 221
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=83.94 E-value=0.48 Score=48.81 Aligned_cols=44 Identities=9% Similarity=0.087 Sum_probs=30.5
Q ss_pred HHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeec
Q 035699 336 EELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCT 380 (633)
Q Consensus 336 ~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilit 380 (633)
+.++.-+..+..++|.|++|+|||+.+.+++..... .+.++++.
T Consensus 59 D~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g~~vl~~ 102 (315)
T 3bh0_A 59 DRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-NDDVVNLH 102 (315)
T ss_dssp HHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TTCEEEEE
T ss_pred HhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEE
Confidence 334444666899999999999999888877765432 22355554
No 222
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=83.88 E-value=0.31 Score=48.97 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=18.8
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..+.++.|.||+||||||.+-.
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~ 60 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRI 60 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHH
T ss_pred EcCCcEEEEECCCCCCHHHHHHH
Confidence 44677899999999999987643
No 223
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=83.82 E-value=0.31 Score=48.64 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=19.2
Q ss_pred HHcCCeEEEeccCCChhhchHHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
+..+.++.|.|++||||||.+-..
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l 49 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKIL 49 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 446788999999999999876543
No 224
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=83.82 E-value=0.45 Score=44.81 Aligned_cols=22 Identities=36% Similarity=0.345 Sum_probs=17.8
Q ss_pred cCCeEEEeccCCChhhchHHHH
Q 035699 344 EYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
.+..++++|+.||||||+.-..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L 24 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNI 24 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHH
Confidence 3567899999999999887543
No 225
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=83.72 E-value=0.54 Score=43.75 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=17.3
Q ss_pred CCeEEEeccCCChhhchHHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~L 366 (633)
+..++++|+.||||||+.-...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4578899999999999765443
No 226
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=83.65 E-value=0.32 Score=49.08 Aligned_cols=23 Identities=39% Similarity=0.458 Sum_probs=19.0
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..+.++.|.|++||||||.+-.
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~ 65 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSAT 65 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45678899999999999987644
No 227
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=83.64 E-value=0.39 Score=45.64 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=17.7
Q ss_pred HcCCeEEEeccCCChhhchHHH
Q 035699 343 SEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
..+.+++|.|+.||||||..-.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~ 44 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACA 44 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHH
Confidence 4567899999999999986443
No 228
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=83.60 E-value=0.32 Score=49.06 Aligned_cols=23 Identities=39% Similarity=0.637 Sum_probs=18.9
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..+.++.|.||+||||||.+-.
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~ 69 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRC 69 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHH
T ss_pred EcCCCEEEEEcCCCCcHHHHHHH
Confidence 45677899999999999987644
No 229
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.55 E-value=0.85 Score=47.04 Aligned_cols=27 Identities=33% Similarity=0.464 Sum_probs=19.9
Q ss_pred HHHHHcCCe--EEEeccCCChhhchHHHH
Q 035699 339 LQAVSEYPV--LVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 339 l~al~~~~~--vIi~a~TGSGKTt~lp~~ 365 (633)
-.++.+++. +++.||+|+||||.+-.+
T Consensus 38 ~~~i~~g~~~~~ll~Gp~G~GKTtla~~l 66 (340)
T 1sxj_C 38 RKFVDEGKLPHLLFYGPPGTGKTSTIVAL 66 (340)
T ss_dssp HHHHHTTCCCCEEEECSSSSSHHHHHHHH
T ss_pred HHHHhcCCCceEEEECCCCCCHHHHHHHH
Confidence 344556655 899999999999875444
No 230
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=83.54 E-value=0.33 Score=48.96 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=18.7
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..+.++.|.|++||||||.+-.
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~ 52 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQI 52 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHH
Confidence 44677899999999999987643
No 231
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=83.49 E-value=0.62 Score=43.21 Aligned_cols=20 Identities=35% Similarity=0.591 Sum_probs=16.3
Q ss_pred CeEEEeccCCChhhchHHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~ 365 (633)
..|++.|++||||||+.-..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L 23 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARI 23 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46889999999999876543
No 232
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=83.41 E-value=0.4 Score=44.47 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=15.7
Q ss_pred eEEEeccCCChhhchHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~ 365 (633)
.++|.|+.||||||+.-..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L 21 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKV 21 (194)
T ss_dssp EEEEEECTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999876543
No 233
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=83.41 E-value=0.96 Score=45.27 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=16.5
Q ss_pred CCeEEEeccCCChhhchHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~ 365 (633)
...+++.||+|||||+.+-.+
T Consensus 50 ~~~vll~G~~GtGKT~la~~l 70 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRL 70 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 467999999999999765433
No 234
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=83.31 E-value=0.34 Score=48.54 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=18.7
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..+.++.|.||+||||||.+-.
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~ 50 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDL 50 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHHH
Confidence 45677899999999999987643
No 235
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=83.28 E-value=1.4 Score=45.62 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=17.3
Q ss_pred eEEEeccCCChhhchHHHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~Ll 367 (633)
.++|.||+|+|||+.+-.+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 799999999999987655443
No 236
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=83.19 E-value=0.63 Score=44.40 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=16.8
Q ss_pred eEEEeccCCChhhchHHHHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQYLYE 368 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~Lle 368 (633)
.++|.|++||||||+.-.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3788999999999886554333
No 237
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=83.16 E-value=2.2 Score=40.00 Aligned_cols=72 Identities=15% Similarity=0.168 Sum_probs=51.0
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCC-----ccc-cCC
Q 035699 518 IGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATN-----IAE-TSL 591 (633)
Q Consensus 518 ~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATd-----IAe-rGL 591 (633)
.+.+||.+|++.-+..+++.+.... +.+.+..+||+.....+...+.. ...|+|+|+ ... ..+
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~----~~~i~v~T~~~l~~~~~~~~~ 140 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVA-------PHLKVVAVYGGTGYGKQKEALLR----GADAVVATPGRALDYLRQGVL 140 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHC-------TTSCEEEECSSSCSHHHHHHHHH----CCSEEEECHHHHHHHHHHTSS
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHh-------hcceEEEEECCCChHHHHHHhhC----CCCEEEECHHHHHHHHHcCCc
Confidence 4679999999999999999998764 24678889998876555444322 246999995 222 345
Q ss_pred CCCCccEEE
Q 035699 592 TIDGIKYVI 600 (633)
Q Consensus 592 dIp~V~~VI 600 (633)
...++++||
T Consensus 141 ~~~~~~~iV 149 (207)
T 2gxq_A 141 DLSRVEVAV 149 (207)
T ss_dssp CCTTCSEEE
T ss_pred chhhceEEE
Confidence 566777665
No 238
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=83.14 E-value=0.57 Score=44.76 Aligned_cols=22 Identities=32% Similarity=0.376 Sum_probs=17.2
Q ss_pred CCeEEEeccCCChhhchHHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~L 366 (633)
+..+.++|++||||||.+-..+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~ 22 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKAS 22 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHH
Confidence 3568899999999999765443
No 239
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=83.14 E-value=0.35 Score=48.98 Aligned_cols=23 Identities=35% Similarity=0.418 Sum_probs=19.1
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..+.++.|.|++||||||.+-.
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~ 64 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAAL 64 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHHH
Confidence 55678899999999999987643
No 240
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=83.10 E-value=0.8 Score=47.28 Aligned_cols=28 Identities=29% Similarity=0.321 Sum_probs=22.9
Q ss_pred HHcCCeEEEeccCCChhhchHHHHHHHh
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQYLYEA 369 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~Lle~ 369 (633)
+..+.+++|.|++|||||+.+.+++...
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 3456889999999999998888777654
No 241
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=83.10 E-value=0.42 Score=44.35 Aligned_cols=18 Identities=39% Similarity=0.495 Sum_probs=15.1
Q ss_pred eEEEeccCCChhhchHHH
Q 035699 347 VLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~ 364 (633)
..+|+|++||||||.+-.
T Consensus 28 ~~~i~G~NGsGKStll~a 45 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDA 45 (182)
T ss_dssp EEEEEECTTSSHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHH
Confidence 788999999999987543
No 242
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=83.03 E-value=0.53 Score=45.87 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=16.3
Q ss_pred CCeEEEeccCCChhhchHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~ 365 (633)
+..++|.|+||||||+....+
T Consensus 34 g~~ilI~GpsGsGKStLA~~L 54 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALEL 54 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 456889999999999765433
No 243
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=83.03 E-value=0.57 Score=48.33 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=17.4
Q ss_pred CeEEEeccCCChhhchHHHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~L 366 (633)
.+++|+|+.||||||.+-..+
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~ 25 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHIL 25 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHH
Confidence 468899999999999876554
No 244
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=83.02 E-value=0.89 Score=46.17 Aligned_cols=30 Identities=23% Similarity=0.568 Sum_probs=22.9
Q ss_pred HHHHHcCCeEEEeccCCChhhchHHHHHHH
Q 035699 339 LQAVSEYPVLVIVGETGSGKTTQIPQYLYE 368 (633)
Q Consensus 339 l~al~~~~~vIi~a~TGSGKTt~lp~~Lle 368 (633)
..++..+..++|.|+.|+|||+.+-.++..
T Consensus 25 ~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 25 EESLENYPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp HHHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHhcCCeEEEECCCcCCHHHHHHHHHHH
Confidence 334444688999999999999887766654
No 245
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=82.95 E-value=0.35 Score=49.23 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=18.8
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..+..+.|.||+||||||.+-.
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~ 66 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNI 66 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHH
Confidence 45677899999999999987643
No 246
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=82.93 E-value=0.65 Score=44.93 Aligned_cols=22 Identities=36% Similarity=0.407 Sum_probs=17.6
Q ss_pred CCeEEEeccCCChhhchHHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~L 366 (633)
...+++.|++||||||+.-...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999765443
No 247
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=82.80 E-value=0.44 Score=44.18 Aligned_cols=20 Identities=30% Similarity=0.292 Sum_probs=16.5
Q ss_pred cCCeEEEeccCCChhhchHH
Q 035699 344 EYPVLVIVGETGSGKTTQIP 363 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp 363 (633)
.+..++++|+.||||||+.-
T Consensus 4 ~g~~i~l~G~~GsGKST~~~ 23 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSM 23 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 45678899999999998753
No 248
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=82.77 E-value=0.36 Score=48.29 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=18.8
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..+..+.|.||+||||||.+-.
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~ 45 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLAR 45 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHH
Confidence 34678899999999999987654
No 249
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=82.76 E-value=0.49 Score=51.18 Aligned_cols=45 Identities=16% Similarity=0.187 Sum_probs=30.7
Q ss_pred HHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeec
Q 035699 336 EELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCT 380 (633)
Q Consensus 336 ~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilit 380 (633)
+.++.-+..+..++|.|++|+|||+...+++.......+.++++.
T Consensus 191 D~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~ 235 (444)
T 2q6t_A 191 DQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIY 235 (444)
T ss_dssp HHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred hhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 334444666789999999999999887777665433223356553
No 250
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=82.74 E-value=0.88 Score=46.58 Aligned_cols=26 Identities=23% Similarity=0.463 Sum_probs=19.4
Q ss_pred HcCCeEEEeccCCChhhchHHHHHHHh
Q 035699 343 SEYPVLVIVGETGSGKTTQIPQYLYEA 369 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~lp~~Lle~ 369 (633)
.....|+|.|+||+|||+ +...++..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~-lAr~i~~~ 48 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKEL-VARALHAC 48 (304)
T ss_dssp STTSCEEEESCTTSCHHH-HHHHHHHH
T ss_pred CCCCcEEEECCCCchHHH-HHHHHHHh
Confidence 345679999999999995 44566654
No 251
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=82.74 E-value=0.59 Score=44.12 Aligned_cols=19 Identities=42% Similarity=0.712 Sum_probs=15.2
Q ss_pred eEEEeccCCChhhchHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~ 365 (633)
.+.+.||+||||||.+-..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l 20 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKI 20 (178)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4778999999999876433
No 252
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=82.70 E-value=1.5 Score=44.75 Aligned_cols=56 Identities=25% Similarity=0.252 Sum_probs=31.9
Q ss_pred cCCeEEEeccCCChhhchHHHHHHHhccccCCeeee--cchhHHHHHHHHHHHHHHhCC
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGC--TQLRRVAAMSVAARVSQEMGV 400 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkili--tqPrR~aA~qva~rva~e~g~ 400 (633)
.+.++.++|++|+||||.+........ ..+++|++ .-|++.++......+....|.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~-~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l 154 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK-GKGRRPLLVAADTQRPAAREQLRLLGEKVGV 154 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH-HTTCCEEEEECCSSCHHHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEecCCcccHhHHHHHHHhcccCCe
Confidence 466788889999999987554433221 22345544 455665554333334444443
No 253
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=82.64 E-value=0.56 Score=49.52 Aligned_cols=38 Identities=26% Similarity=0.250 Sum_probs=26.2
Q ss_pred HHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeec
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCT 380 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilit 380 (633)
+..+.+++|.||+||||||.+.+.+.... ..+++++++
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~-~~gg~VlyI 95 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQ-KMGGVAAFI 95 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEE
Confidence 33468899999999999998777765532 233455543
No 254
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=82.63 E-value=0.97 Score=46.95 Aligned_cols=30 Identities=10% Similarity=0.148 Sum_probs=20.9
Q ss_pred HHHHHHc--CCeEEEeccCCChhhchHHHHHH
Q 035699 338 LLQAVSE--YPVLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 338 il~al~~--~~~vIi~a~TGSGKTt~lp~~Ll 367 (633)
+.+++.+ ..+++|.||+|||||+.+-..+.
T Consensus 36 L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~ 67 (318)
T 3te6_A 36 IYDSLMSSQNKLFYITNADDSTKFQLVNDVMD 67 (318)
T ss_dssp HHHHHHTTCCCEEEEECCCSHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3444443 46799999999999976554443
No 255
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=82.60 E-value=0.74 Score=44.14 Aligned_cols=21 Identities=38% Similarity=0.580 Sum_probs=16.9
Q ss_pred CeEEEeccCCChhhchHHHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~L 366 (633)
..+.|.|++||||||..-...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~ 26 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMA 26 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 568899999999998765443
No 256
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=82.56 E-value=0.71 Score=46.37 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=17.9
Q ss_pred CCeEEEeccCCChhhchHHHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Ll 367 (633)
...+++.||+|||||+.+-....
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 56799999999999976544433
No 257
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=82.56 E-value=0.34 Score=50.14 Aligned_cols=23 Identities=35% Similarity=0.510 Sum_probs=19.2
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..+..+.|+|++||||||.+-.
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~l 99 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRL 99 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHH
T ss_pred EcCCCEEEEECCCCchHHHHHHH
Confidence 45678899999999999987643
No 258
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=82.53 E-value=0.65 Score=43.93 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=16.4
Q ss_pred CeEEEeccCCChhhchHHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~ 365 (633)
.+++|+|+.||||||+.-..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L 38 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAI 38 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 47899999999999875443
No 259
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=82.49 E-value=0.7 Score=43.24 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=16.6
Q ss_pred eEEEeccCCChhhchHHHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~Ll 367 (633)
.++|.|+.||||||+.-....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 578999999999997654443
No 260
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=82.48 E-value=0.67 Score=42.85 Aligned_cols=21 Identities=38% Similarity=0.618 Sum_probs=16.6
Q ss_pred CeEEEeccCCChhhchHHHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~L 366 (633)
..++++|++||||||+.-...
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 368899999999998765443
No 261
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=82.45 E-value=0.64 Score=48.29 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=17.0
Q ss_pred CeEEEeccCCChhhchHHHHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~Ll 367 (633)
..++|+||||||||+.......
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 4688899999999976554443
No 262
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=82.35 E-value=0.76 Score=45.09 Aligned_cols=22 Identities=36% Similarity=0.406 Sum_probs=18.0
Q ss_pred CCeEEEeccCCChhhchHHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~L 366 (633)
...++|+|++||||||++-...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999865544
No 263
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=82.33 E-value=0.61 Score=46.78 Aligned_cols=27 Identities=22% Similarity=0.169 Sum_probs=22.4
Q ss_pred HHHcCCeEEEeccCCChhhchHHHHHH
Q 035699 341 AVSEYPVLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 341 al~~~~~vIi~a~TGSGKTt~lp~~Ll 367 (633)
-+..+.+++|.|++||||||.+.+++.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 356788999999999999998776654
No 264
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=82.28 E-value=0.7 Score=43.59 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=17.2
Q ss_pred CeEEEeccCCChhhchHHHHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~Ll 367 (633)
..++++|+.||||||+.-....
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3688899999999987654443
No 265
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=82.26 E-value=0.81 Score=42.83 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=17.3
Q ss_pred cCCeEEEeccCCChhhchHHHH
Q 035699 344 EYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
.+..++++|++||||||..-..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~L 30 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMI 30 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3567999999999999875433
No 266
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=82.22 E-value=0.7 Score=44.13 Aligned_cols=21 Identities=38% Similarity=0.477 Sum_probs=16.4
Q ss_pred eEEEeccCCChhhchHHHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~Ll 367 (633)
.++|+|+.||||||+.-....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378899999999988655433
No 267
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=82.22 E-value=0.47 Score=46.32 Aligned_cols=21 Identities=38% Similarity=0.515 Sum_probs=17.2
Q ss_pred cCCeEEEeccCCChhhchHHH
Q 035699 344 EYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~ 364 (633)
.+..+.|.|+.||||||++-.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~ 39 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNH 39 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHH
Confidence 456788999999999997643
No 268
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=82.22 E-value=0.35 Score=46.05 Aligned_cols=25 Identities=36% Similarity=0.288 Sum_probs=19.1
Q ss_pred HHHHcCCeEEEeccCCChhhchHHH
Q 035699 340 QAVSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 340 ~al~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+.+..+..+.|+|++||||||..-.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~ 40 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKN 40 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHH
Confidence 3445567788999999999987543
No 269
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=82.20 E-value=0.66 Score=48.05 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=18.1
Q ss_pred CeEEEeccCCChhhchHHHHHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQYLYE 368 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~Lle 368 (633)
..+++.||+||||||.+-.....
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 56899999999999876555443
No 270
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=82.11 E-value=0.51 Score=44.07 Aligned_cols=19 Identities=42% Similarity=0.587 Sum_probs=15.5
Q ss_pred eEEEeccCCChhhchHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~ 365 (633)
.+++.|+.||||||+.-..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L 20 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLL 20 (197)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4788999999999986543
No 271
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=82.04 E-value=0.99 Score=45.88 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=18.0
Q ss_pred CCeEEEeccCCChhhchHHHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Ll 367 (633)
...++++|++||||||..-....
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999987665543
No 272
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=81.94 E-value=0.88 Score=44.62 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=19.0
Q ss_pred cCCeEEEeccCCChhhchHHHHHH
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~Ll 367 (633)
.+..+++.|+.||||||++-....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 456789999999999998755443
No 273
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=81.91 E-value=0.71 Score=43.94 Aligned_cols=20 Identities=50% Similarity=0.365 Sum_probs=16.3
Q ss_pred CCeEEEeccCCChhhchHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~ 364 (633)
+.++.|.|++||||||.+-.
T Consensus 22 ~~~i~i~G~~GsGKstl~~~ 41 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQ 41 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 46788999999999987543
No 274
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=81.82 E-value=1.4 Score=46.32 Aligned_cols=79 Identities=11% Similarity=0.136 Sum_probs=58.2
Q ss_pred CCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCcccc----CC
Q 035699 516 EPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIAET----SL 591 (633)
Q Consensus 516 ~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIAer----GL 591 (633)
...+.+||.+|++.-+..+++.+.... . .++.+..+||+.+..++...+.....|...|+|+|+=.-. -+
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~----~--~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~ 135 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLA----D--EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKL 135 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHC----C--SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHH
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHc----c--CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHh
Confidence 345789999999999999999998853 1 4788999999999977666665555666789999973220 14
Q ss_pred CCCCccEEE
Q 035699 592 TIDGIKYVI 600 (633)
Q Consensus 592 dIp~V~~VI 600 (633)
...++++||
T Consensus 136 ~~~~~~~iV 144 (414)
T 3oiy_A 136 SQKRFDFVF 144 (414)
T ss_dssp TTCCCSEEE
T ss_pred ccccccEEE
Confidence 445666554
No 275
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=81.71 E-value=0.51 Score=44.03 Aligned_cols=22 Identities=36% Similarity=0.401 Sum_probs=17.6
Q ss_pred cCCeEEEeccCCChhhchHHHH
Q 035699 344 EYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
.+..++++|..||||||+.-..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L 33 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRL 33 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHH
Confidence 3567889999999999875543
No 276
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=81.70 E-value=1.2 Score=44.28 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=18.4
Q ss_pred HcCCeEEEeccCCChhhchHHHHH
Q 035699 343 SEYPVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~lp~~L 366 (633)
.....+++.||+|||||+.+-...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la 72 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVA 72 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHH
Confidence 345679999999999997654443
No 277
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=81.69 E-value=0.46 Score=46.81 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=17.9
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..+.++.|.|++||||||.+-.
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~ 44 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEK 44 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHH
Confidence 45667788999999999987543
No 278
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.67 E-value=0.88 Score=46.55 Aligned_cols=28 Identities=29% Similarity=0.520 Sum_probs=19.2
Q ss_pred HHHHHHcC--CeEEEeccCCChhhchHHHH
Q 035699 338 LLQAVSEY--PVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 338 il~al~~~--~~vIi~a~TGSGKTt~lp~~ 365 (633)
+..++..+ ..+++.||+|+|||+.+-.+
T Consensus 49 l~~~l~~~~~~~~ll~G~~G~GKT~la~~l 78 (353)
T 1sxj_D 49 LKKTLKSANLPHMLFYGPPGTGKTSTILAL 78 (353)
T ss_dssp HHHHTTCTTCCCEEEECSTTSSHHHHHHHH
T ss_pred HHHHHhcCCCCEEEEECCCCCCHHHHHHHH
Confidence 33444444 45899999999999765433
No 279
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=81.38 E-value=0.51 Score=44.42 Aligned_cols=20 Identities=50% Similarity=0.669 Sum_probs=15.9
Q ss_pred CeEEEeccCCChhhchHHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~ 365 (633)
+.+.|+|++||||||.+-..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L 22 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRM 22 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46788999999999875443
No 280
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=81.33 E-value=0.76 Score=47.97 Aligned_cols=27 Identities=22% Similarity=0.196 Sum_probs=22.4
Q ss_pred HcCCeEEEeccCCChhhchHHHHHHHh
Q 035699 343 SEYPVLVIVGETGSGKTTQIPQYLYEA 369 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~lp~~Lle~ 369 (633)
..+.+++|.|++|||||+.+.+++...
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346889999999999999888777664
No 281
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=81.29 E-value=0.64 Score=50.48 Aligned_cols=43 Identities=9% Similarity=0.066 Sum_probs=30.8
Q ss_pred HHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeec
Q 035699 337 ELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCT 380 (633)
Q Consensus 337 ~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilit 380 (633)
.++.-+..+..++|.|++|+|||+...+++...... +.++++.
T Consensus 189 ~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~f 231 (444)
T 3bgw_A 189 RMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLH 231 (444)
T ss_dssp HHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEEE
T ss_pred hhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEEE
Confidence 334445677899999999999999888877765433 3366554
No 282
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=81.25 E-value=1.3 Score=48.03 Aligned_cols=57 Identities=23% Similarity=0.332 Sum_probs=34.4
Q ss_pred CeEEEeccCCChhhchHHHHHHHhccccCCeee--ecchhHHHHHHHHHHHHHHhCCcc
Q 035699 346 PVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIG--CTQLRRVAAMSVAARVSQEMGVKL 402 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkil--itqPrR~aA~qva~rva~e~g~~v 402 (633)
.+++++|++|+||||.............+.+++ -+-|.|.++......++...|+.+
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v 159 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDF 159 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeE
Confidence 478888999999999766554432221122443 356777666655444555555543
No 283
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=81.23 E-value=2.1 Score=51.97 Aligned_cols=79 Identities=13% Similarity=0.165 Sum_probs=63.9
Q ss_pred CCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCC-ccccCCCCCC
Q 035699 517 PIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATN-IAETSLTIDG 595 (633)
Q Consensus 517 ~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATd-IAerGLdIp~ 595 (633)
..+++||.+||..-+...++.+...+.. .++.+..+||..+...+..++.....|...|||+|. ++...+.+.+
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~-----~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~ 725 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFAN-----WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKD 725 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTT-----TTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSS
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhc-----CCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccc
Confidence 3468999999999999999999876532 256788999999999988888888888899999994 4555677888
Q ss_pred ccEEE
Q 035699 596 IKYVI 600 (633)
Q Consensus 596 V~~VI 600 (633)
+.+||
T Consensus 726 l~lvI 730 (1151)
T 2eyq_A 726 LGLLI 730 (1151)
T ss_dssp EEEEE
T ss_pred cceEE
Confidence 87765
No 284
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=81.20 E-value=1.2 Score=45.99 Aligned_cols=22 Identities=27% Similarity=0.227 Sum_probs=17.2
Q ss_pred CCeEEEeccCCChhhchHHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~L 366 (633)
...++|.||+|+|||+.+-...
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~ 66 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIF 66 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHH
Confidence 4579999999999998654443
No 285
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=81.14 E-value=0.81 Score=45.02 Aligned_cols=41 Identities=17% Similarity=0.044 Sum_probs=30.1
Q ss_pred HcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhH
Q 035699 343 SEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRR 384 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR 384 (633)
..+.+.+++|+-||||||.+...+.... ..+.++++++|..
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~-~~g~kvli~kp~~ 66 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGI-YAKQKVVVFKPAI 66 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHH-HTTCCEEEEEEC-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH-HcCCceEEEEecc
Confidence 4568889999999999998877765542 2234788888854
No 286
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=81.13 E-value=0.6 Score=44.18 Aligned_cols=22 Identities=32% Similarity=0.297 Sum_probs=17.6
Q ss_pred cCCeEEEeccCCChhhchHHHH
Q 035699 344 EYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
.+..++++|+.||||||+.-..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L 30 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLL 30 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHH
Confidence 3567899999999999975443
No 287
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=81.03 E-value=4.1 Score=39.43 Aligned_cols=76 Identities=12% Similarity=0.090 Sum_probs=45.8
Q ss_pred CCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCC-----cccc-C
Q 035699 517 PIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATN-----IAET-S 590 (633)
Q Consensus 517 ~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATd-----IAer-G 590 (633)
..+.+||.+|+++-+..+++.+...... .++.+..++|+.....+. .....+...|+|+|+ ...+ .
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~---~~l~~~~~~Ilv~Tp~~l~~~l~~~~ 168 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDY-----MGATCHACIGGTNVRNEM---QKLQAEAPHIVVGTPGRVFDMLNRRY 168 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTT-----TTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTS
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhh-----cCceEEEEECCCchHHHH---HHHhcCCCCEEEECHHHHHHHHHhCC
Confidence 3468999999999999999998875422 256677888886654332 233345568999993 3333 3
Q ss_pred CCCCCccEEE
Q 035699 591 LTIDGIKYVI 600 (633)
Q Consensus 591 LdIp~V~~VI 600 (633)
+...++.+||
T Consensus 169 ~~~~~~~~lV 178 (237)
T 3bor_A 169 LSPKWIKMFV 178 (237)
T ss_dssp SCSTTCCEEE
T ss_pred cCcccCcEEE
Confidence 5666777655
No 288
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=80.99 E-value=0.59 Score=43.41 Aligned_cols=18 Identities=44% Similarity=0.632 Sum_probs=15.0
Q ss_pred eEEEeccCCChhhchHHH
Q 035699 347 VLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~ 364 (633)
.++++|+.||||||+.-.
T Consensus 2 ~I~l~G~~GsGKsT~~~~ 19 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKK 19 (195)
T ss_dssp EEEEECSTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578899999999987543
No 289
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=80.93 E-value=7.3 Score=37.31 Aligned_cols=73 Identities=11% Similarity=0.150 Sum_probs=50.6
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCc-----ccc--C
Q 035699 518 IGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNI-----AET--S 590 (633)
Q Consensus 518 ~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdI-----Aer--G 590 (633)
...+||.+|++.-+...++.+...... .++.+..+||+.+...+...+. ...|+|+|+- ... .
T Consensus 97 ~~~~lil~Pt~~L~~q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~-----~~~iiv~Tp~~l~~~l~~~~~ 166 (236)
T 2pl3_A 97 GLGVLIISPTRELAYQTFEVLRKVGKN-----HDFSAGLIIGGKDLKHEAERIN-----NINILVCTPGRLLQHMDETVS 166 (236)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTT-----SSCCEEEECCC--CHHHHHHHT-----TCSEEEECHHHHHHHHHHCSS
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCC-----CCeeEEEEECCCCHHHHHHhCC-----CCCEEEECHHHHHHHHHhcCC
Confidence 467999999999999999998875321 2578889999987766655552 3579999951 222 3
Q ss_pred CCCCCccEEE
Q 035699 591 LTIDGIKYVI 600 (633)
Q Consensus 591 LdIp~V~~VI 600 (633)
+...++.+||
T Consensus 167 ~~~~~~~~lV 176 (236)
T 2pl3_A 167 FHATDLQMLV 176 (236)
T ss_dssp CCCTTCCEEE
T ss_pred cccccccEEE
Confidence 5666776555
No 290
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=80.93 E-value=1 Score=46.91 Aligned_cols=20 Identities=35% Similarity=0.522 Sum_probs=15.8
Q ss_pred cCCeEEEeccCCChhhchHH
Q 035699 344 EYPVLVIVGETGSGKTTQIP 363 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp 363 (633)
....+++.||+|||||+..-
T Consensus 50 ~~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 34569999999999997543
No 291
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=80.91 E-value=0.78 Score=44.15 Aligned_cols=22 Identities=32% Similarity=0.271 Sum_probs=17.4
Q ss_pred CeEEEeccCCChhhchHHHHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~Ll 367 (633)
..+++.|+.||||||+.-....
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999998655443
No 292
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=80.89 E-value=0.47 Score=45.04 Aligned_cols=19 Identities=32% Similarity=0.594 Sum_probs=15.8
Q ss_pred eEEEeccCCChhhchHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~ 365 (633)
.++|+|+.||||||++-..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L 20 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKL 20 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 5788999999999986544
No 293
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=80.86 E-value=5.7 Score=37.86 Aligned_cols=74 Identities=18% Similarity=0.189 Sum_probs=47.9
Q ss_pred CCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCC------ccccC
Q 035699 517 PIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATN------IAETS 590 (633)
Q Consensus 517 ~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATd------IAerG 590 (633)
..+.+||.+|+++-+..+++.+.... ..++.+..+||+.+...+...+.. ...|+|+|+ +....
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~----~~~iiv~Tp~~l~~~~~~~~ 162 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYS------YKGLKSICIYGGRNRNGQIEDISK----GVDIIIATPGRLNDLQMNNS 162 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHC------CTTCCEEEECC------CHHHHHS----CCSEEEECHHHHHHHHHTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhc------ccCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCC
Confidence 34679999999999999999888752 136778889998876655444422 257999995 22335
Q ss_pred CCCCCccEEE
Q 035699 591 LTIDGIKYVI 600 (633)
Q Consensus 591 LdIp~V~~VI 600 (633)
+.+.++++||
T Consensus 163 ~~~~~~~~lV 172 (228)
T 3iuy_A 163 VNLRSITYLV 172 (228)
T ss_dssp CCCTTCCEEE
T ss_pred cCcccceEEE
Confidence 5667777654
No 294
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=80.82 E-value=0.83 Score=42.98 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=18.0
Q ss_pred CCeEEEeccCCChhhchHHHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Ll 367 (633)
+..+++.|+.||||||+.-....
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45688999999999998655443
No 295
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=80.78 E-value=0.97 Score=47.01 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=15.3
Q ss_pred eEEEeccCCChhhchHHH
Q 035699 347 VLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~ 364 (633)
++.|.|++||||||.+-.
T Consensus 94 iigI~GpsGSGKSTl~~~ 111 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRV 111 (321)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 788899999999987543
No 296
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=80.78 E-value=0.95 Score=47.50 Aligned_cols=37 Identities=27% Similarity=0.247 Sum_probs=26.2
Q ss_pred HHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeee
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGC 379 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkili 379 (633)
+..+.+++|.|++||||||.+.+.+.... ..++++++
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~-~~g~~vly 94 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQ-AAGGIAAF 94 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH-HTTCCEEE
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH-hCCCeEEE
Confidence 44578899999999999998777765542 22334544
No 297
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=80.74 E-value=0.62 Score=42.57 Aligned_cols=17 Identities=35% Similarity=0.765 Sum_probs=14.3
Q ss_pred CeEEEeccCCChhhchH
Q 035699 346 PVLVIVGETGSGKTTQI 362 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~l 362 (633)
...+|+||+|||||+.+
T Consensus 24 g~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 36788999999999864
No 298
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=80.71 E-value=0.72 Score=48.37 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=22.6
Q ss_pred HHcCCeEEEeccCCChhhchHHHHHHHh
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQYLYEA 369 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~Lle~ 369 (633)
+..+.++.|.|++||||||.+.+.+...
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4456889999999999999887776553
No 299
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=80.65 E-value=1 Score=43.31 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=17.3
Q ss_pred CCeEEEeccCCChhhchHHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~L 366 (633)
+..+++.|+.||||||+.-...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3468899999999999865443
No 300
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=80.62 E-value=0.91 Score=41.39 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=15.9
Q ss_pred CeEEEeccCCChhhchHHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~ 365 (633)
..+++.|+.||||||+.-..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~L 22 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGREL 22 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 35889999999999875443
No 301
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=80.62 E-value=1 Score=44.29 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=16.4
Q ss_pred CCeEEEeccCCChhhchHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~ 365 (633)
...+++.||+|||||+.+-..
T Consensus 45 ~~~vll~G~~GtGKT~la~~l 65 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAI 65 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHH
Confidence 346899999999999765443
No 302
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=80.61 E-value=0.9 Score=42.91 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=16.6
Q ss_pred CeEEEeccCCChhhchHHHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~L 366 (633)
..++++|++||||||+.-...
T Consensus 21 ~~I~l~G~~GsGKST~a~~La 41 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLA 41 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 368899999999998755443
No 303
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=80.54 E-value=0.9 Score=46.85 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=18.0
Q ss_pred cCCeEEEeccCCChhhchHHHHH
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~L 366 (633)
....++|+||+|+|||+.+-.+.
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~ 65 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVL 65 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHH
Confidence 45679999999999998655443
No 304
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=80.51 E-value=1.5 Score=44.17 Aligned_cols=19 Identities=37% Similarity=0.492 Sum_probs=15.5
Q ss_pred eEEEeccCCChhhchHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~ 365 (633)
.+++.||+|+|||+.+-.+
T Consensus 48 ~~ll~G~~G~GKT~la~~l 66 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALAL 66 (327)
T ss_dssp EEEEESCTTSSHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHH
Confidence 5999999999999765443
No 305
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=80.50 E-value=0.69 Score=48.48 Aligned_cols=44 Identities=11% Similarity=0.162 Sum_probs=31.4
Q ss_pred HHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeec
Q 035699 336 EELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCT 380 (633)
Q Consensus 336 ~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilit 380 (633)
+.++.-+..+..++|.|++|+|||+.+.+++..... .+.+|++.
T Consensus 37 D~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~g~~Vl~f 80 (338)
T 4a1f_A 37 DNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN-DDRGVAVF 80 (338)
T ss_dssp HHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-TTCEEEEE
T ss_pred HHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEE
Confidence 444445667889999999999999988777665433 34466654
No 306
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=80.43 E-value=0.77 Score=46.25 Aligned_cols=18 Identities=33% Similarity=0.508 Sum_probs=14.9
Q ss_pred CeEEEeccCCChhhchHH
Q 035699 346 PVLVIVGETGSGKTTQIP 363 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp 363 (633)
..+++.||+|||||+.+-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 468999999999997543
No 307
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=80.39 E-value=0.7 Score=44.25 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=19.0
Q ss_pred HHHcCCeEEEeccCCChhhchHHH
Q 035699 341 AVSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 341 al~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
.+..+..++++|+.||||||+.-.
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~ 44 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVE 44 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHH
Confidence 355677899999999999987543
No 308
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=80.37 E-value=0.84 Score=43.64 Aligned_cols=20 Identities=35% Similarity=0.684 Sum_probs=15.8
Q ss_pred eEEEeccCCChhhchHHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~L 366 (633)
-|||+||+||||||.+-..+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~ 22 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48899999999998664433
No 309
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=80.33 E-value=0.68 Score=43.85 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=17.8
Q ss_pred cCCeEEEeccCCChhhchHHHH
Q 035699 344 EYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
.+..++++|+.||||||+.-..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L 29 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKL 29 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4567899999999999976544
No 310
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=80.31 E-value=0.48 Score=48.55 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=18.7
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++.+.|.|++||||||.+-.
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~ 83 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMM 83 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHH
Confidence 34678899999999999987644
No 311
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=80.25 E-value=0.64 Score=44.09 Aligned_cols=19 Identities=37% Similarity=0.581 Sum_probs=15.2
Q ss_pred eEEEeccCCChhhchHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~ 365 (633)
++.+.|+.||||||..-..
T Consensus 4 ~i~l~G~~GsGKST~~~~L 22 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLF 22 (206)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5788999999999875433
No 312
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=80.24 E-value=1.1 Score=49.59 Aligned_cols=35 Identities=17% Similarity=0.053 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHcCCeEEEeccCCChhhchHHHHHHH
Q 035699 333 PFREELLQAVSEYPVLVIVGETGSGKTTQIPQYLYE 368 (633)
Q Consensus 333 ~~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle 368 (633)
.....++.++..+..|++.||+|+|||+. ...+..
T Consensus 29 ~~i~~l~~al~~~~~VLL~GpPGtGKT~L-AraLa~ 63 (500)
T 3nbx_X 29 HAIRLCLLAALSGESVFLLGPPGIAKSLI-ARRLKF 63 (500)
T ss_dssp HHHHHHHHHHHHTCEEEEECCSSSSHHHH-HHHGGG
T ss_pred HHHHHHHHHHhcCCeeEeecCchHHHHHH-HHHHHH
Confidence 34455677777888999999999999954 334433
No 313
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=80.09 E-value=0.7 Score=50.68 Aligned_cols=45 Identities=16% Similarity=0.161 Sum_probs=32.1
Q ss_pred HHHHHHHHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeec
Q 035699 336 EELLQAVSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCT 380 (633)
Q Consensus 336 ~~il~al~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilit 380 (633)
+.++.-+..+..++|.|++|+|||+...+++.......+.++++.
T Consensus 233 D~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~ 277 (503)
T 1q57_A 233 NDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLA 277 (503)
T ss_dssp HHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEE
T ss_pred hHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEE
Confidence 444444667889999999999999988888876543323355553
No 314
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=80.05 E-value=0.9 Score=43.48 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=16.4
Q ss_pred eEEEeccCCChhhchHHHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~Ll 367 (633)
.+++.|++||||||+.-....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378899999999998654433
No 315
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=80.01 E-value=0.74 Score=45.65 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=18.4
Q ss_pred cCCeEEEeccCCChhhchHHHHH
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~L 366 (633)
.+.++.|.|++||||||.+-...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999998765444
No 316
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=79.94 E-value=0.9 Score=47.69 Aligned_cols=20 Identities=45% Similarity=0.496 Sum_probs=15.9
Q ss_pred CeEEEeccCCChhhchHHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~ 365 (633)
.+++|+|+|||||||.....
T Consensus 8 ~lI~I~GptgSGKTtla~~L 27 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEV 27 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHH
Confidence 36889999999999865443
No 317
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=79.88 E-value=0.63 Score=43.96 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=14.8
Q ss_pred eEEEeccCCChhhchHHH
Q 035699 347 VLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~ 364 (633)
.+.|+|++||||||..-.
T Consensus 3 ~i~i~G~~GsGKSTl~~~ 20 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQM 20 (204)
T ss_dssp EEEEEECTTSSHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHH
Confidence 578999999999986543
No 318
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=79.88 E-value=0.91 Score=46.38 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=17.3
Q ss_pred CCeEEEeccCCChhhchHHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~L 366 (633)
+..+++.||+|+|||+.+-...
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~ 58 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAG 58 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHH
Confidence 4579999999999997654443
No 319
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=79.79 E-value=0.51 Score=46.86 Aligned_cols=19 Identities=32% Similarity=0.534 Sum_probs=16.1
Q ss_pred CeEEEeccCCChhhchHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~ 364 (633)
.++.|.||+||||||.+-.
T Consensus 25 e~~~liG~nGsGKSTLl~~ 43 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLEL 43 (240)
T ss_dssp SEEEEECCTTSSHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 6788999999999987654
No 320
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=79.78 E-value=0.89 Score=47.37 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=16.8
Q ss_pred CeEEEeccCCChhhchHHHHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~Ll 367 (633)
..++|+|+|||||||.......
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999986544433
No 321
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=79.58 E-value=0.93 Score=42.72 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=16.8
Q ss_pred CeEEEeccCCChhhchHHHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~L 366 (633)
.++.++|+.||||||.+...+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~ 25 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWV 25 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 468899999999998765544
No 322
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=79.52 E-value=0.65 Score=45.65 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=16.3
Q ss_pred CeEEEeccCCChhhchHHHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~L 366 (633)
..+++.||+||||||.+-...
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~ 70 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVA 70 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 348999999999998665443
No 323
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=79.46 E-value=1 Score=44.46 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=18.0
Q ss_pred CCeEEEeccCCChhhchHHHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Ll 367 (633)
.-.+++.|+.||||||+.-....
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999998665543
No 324
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=79.46 E-value=0.78 Score=50.69 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=22.4
Q ss_pred HHHcCCeEEEeccCCChhhchHHHHHH
Q 035699 341 AVSEYPVLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 341 al~~~~~vIi~a~TGSGKTt~lp~~Ll 367 (633)
.+..+.++.|.|++||||||.+-++++
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll 61 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLY 61 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 455789999999999999998877643
No 325
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=79.34 E-value=1.1 Score=49.55 Aligned_cols=24 Identities=29% Similarity=0.636 Sum_probs=18.5
Q ss_pred HcCCeEEEeccCCChhhchHHHHH
Q 035699 343 SEYPVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~lp~~L 366 (633)
.....++|.|.||||||+.+-..+
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L~~li 188 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGVNAMI 188 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHHHHHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHH
Confidence 345679999999999998754443
No 326
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=79.31 E-value=1.1 Score=41.56 Aligned_cols=20 Identities=45% Similarity=0.584 Sum_probs=15.8
Q ss_pred CeEEEeccCCChhhchHHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~ 365 (633)
.+++|+|++||||||..-..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~L 22 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRL 22 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 35889999999999875433
No 327
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=79.14 E-value=1.1 Score=43.67 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=17.9
Q ss_pred cCCeEEEeccCCChhhchHHHHHH
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~Ll 367 (633)
....+++.||+|||||+.+-.+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999976544433
No 328
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=79.13 E-value=0.54 Score=49.72 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=18.6
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..+..+.|.||+||||||.+-.
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~ 49 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRC 49 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHH
T ss_pred EcCCCEEEEECCCCchHHHHHHH
Confidence 34677899999999999987543
No 329
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=79.12 E-value=1.7 Score=53.02 Aligned_cols=51 Identities=16% Similarity=0.225 Sum_probs=37.6
Q ss_pred EEEeccCCChhhchHHHHHHHhccc-----------cCCeeeecchhHHHHHHHHHHHHHHh
Q 035699 348 LVIVGETGSGKTTQIPQYLYEAGYT-----------KQGKIGCTQLRRVAAMSVAARVSQEM 398 (633)
Q Consensus 348 vIi~a~TGSGKTt~lp~~Lle~~~~-----------~~gkilitqPrR~aA~qva~rva~e~ 398 (633)
.+|.|.-|||||..+..-++..... ...+|+|+.=|+.||..+..|+...+
T Consensus 19 ~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 19 RLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 4899999999998766544433221 11279999999999999888887654
No 330
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=79.11 E-value=1.4 Score=45.12 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=16.6
Q ss_pred CeEEEeccCCChhhchHHHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~L 366 (633)
..+++.||+|||||+.+-.+.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia 76 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIIS 76 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHH
Confidence 469999999999997655443
No 331
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=79.11 E-value=0.97 Score=41.63 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=13.1
Q ss_pred CCeEEEeccCCChhhchHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~ 365 (633)
...+++.|..||||||+.-..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~L 25 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTL 25 (183)
T ss_dssp CCEEEEECCC----CHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 457899999999999876544
No 332
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=79.03 E-value=1 Score=43.53 Aligned_cols=20 Identities=40% Similarity=0.428 Sum_probs=16.2
Q ss_pred eEEEeccCCChhhchHHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~L 366 (633)
.+++.|+.||||||+.-...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47889999999999865443
No 333
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=79.03 E-value=1.1 Score=40.67 Aligned_cols=19 Identities=26% Similarity=0.256 Sum_probs=15.4
Q ss_pred eEEEeccCCChhhchHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~ 365 (633)
.+++.|+.||||||+.-..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLL 20 (168)
T ss_dssp EEEEESCTTSCHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4789999999999875443
No 334
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=79.01 E-value=0.68 Score=47.86 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=18.1
Q ss_pred HHcCCeEEEeccCCChhhchHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIP 363 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp 363 (633)
+..+.++.|.|++||||||.+-
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~ 108 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTAR 108 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHH
Confidence 4567788999999999998754
No 335
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=78.89 E-value=0.78 Score=46.23 Aligned_cols=20 Identities=40% Similarity=0.581 Sum_probs=17.1
Q ss_pred CCeEEEeccCCChhhchHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~ 364 (633)
++.+.|.|++||||||.+-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~ 49 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRA 49 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 77889999999999987644
No 336
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=78.79 E-value=5.7 Score=40.80 Aligned_cols=76 Identities=14% Similarity=0.239 Sum_probs=53.9
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCcc------ccCC
Q 035699 518 IGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIA------ETSL 591 (633)
Q Consensus 518 ~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIA------erGL 591 (633)
.+.+||.+|++.-+...++.+..... ..+++.+..+||+.+...+...+.. +...|+|+|.=. ...+
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~iiv~T~~~l~~~~~~~~~ 148 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSK----YMPNVKVAVFFGGLSIKKDEEVLKK---NCPHIVVGTPGRILALARNKSL 148 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTT----TCTTCCEEEECTTSCHHHHHHHHHH---SCCSEEEECHHHHHHHHHTTSS
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHh----hCCCeEEEEEeCCCCHHHHHHHHhc---CCCCEEEECHHHHHHHHHcCCc
Confidence 45899999999999999888877532 2346889999999988776655532 345799999521 2234
Q ss_pred CCCCccEEE
Q 035699 592 TIDGIKYVI 600 (633)
Q Consensus 592 dIp~V~~VI 600 (633)
...++++||
T Consensus 149 ~~~~~~~vV 157 (391)
T 1xti_A 149 NLKHIKHFI 157 (391)
T ss_dssp CCTTCSEEE
T ss_pred cccccCEEE
Confidence 566676555
No 337
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=78.74 E-value=0.72 Score=48.61 Aligned_cols=16 Identities=31% Similarity=0.686 Sum_probs=14.2
Q ss_pred eEEEeccCCChhhchH
Q 035699 347 VLVIVGETGSGKTTQI 362 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~l 362 (633)
..+|+|||||||||.+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6778999999999875
No 338
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=78.71 E-value=1 Score=48.29 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=22.7
Q ss_pred HHcCCeEEEeccCCChhhchHHHHHHHh
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQYLYEA 369 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~Lle~ 369 (633)
|..+.++.|.|++||||||.+.+++...
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~~~ 202 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAVTC 202 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHHHh
Confidence 4467899999999999999887766543
No 339
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=78.68 E-value=4.8 Score=39.17 Aligned_cols=73 Identities=15% Similarity=0.219 Sum_probs=52.1
Q ss_pred CCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCc------cccCCC
Q 035699 519 GDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNI------AETSLT 592 (633)
Q Consensus 519 g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdI------AerGLd 592 (633)
+.+||.+|+++-+..+++.+...... .++.++.++|+.+...+...+.. ...|||+|+= ....+.
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~----~~~Ivv~Tp~~l~~~l~~~~~~ 171 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLN-----TPLRSCVVYGGADTHSQIREVQM----GCHLLVATPGRLVDFIEKNKIS 171 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTT-----SSCCEEEECSSSCSHHHHHHHSS----CCSEEEECHHHHHHHHHTTSBC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhcc-----CCceEEEEECCCCHHHHHHHhCC----CCCEEEECHHHHHHHHHcCCCC
Confidence 58999999999999999988876422 25678889999877766555532 3579999962 122345
Q ss_pred CCCccEEE
Q 035699 593 IDGIKYVI 600 (633)
Q Consensus 593 Ip~V~~VI 600 (633)
+.++.+||
T Consensus 172 ~~~~~~lV 179 (253)
T 1wrb_A 172 LEFCKYIV 179 (253)
T ss_dssp CTTCCEEE
T ss_pred hhhCCEEE
Confidence 66676655
No 340
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=78.65 E-value=0.59 Score=49.33 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=18.9
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..+..+.|.||+||||||.+=.
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~ 60 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRL 60 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHH
T ss_pred ECCCCEEEEECCCCCcHHHHHHH
Confidence 45678899999999999987643
No 341
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=78.61 E-value=1 Score=42.47 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=17.5
Q ss_pred CeEEEeccCCChhhchHHHHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~Ll 367 (633)
..++++|++||||||.+...+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 5788999999999987655443
No 342
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=78.61 E-value=0.99 Score=49.02 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=18.9
Q ss_pred HHHHcCC--eEEEeccCCChhhchHHHHH
Q 035699 340 QAVSEYP--VLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 340 ~al~~~~--~vIi~a~TGSGKTt~lp~~L 366 (633)
.++..++ .++++||+|||||+.+-.+.
T Consensus 43 ~~i~~~~~~~vLL~GppGtGKTtlAr~ia 71 (447)
T 3pvs_A 43 RAIEAGHLHSMILWGPPGTGKTTLAEVIA 71 (447)
T ss_dssp HHHHHTCCCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHcCCCcEEEEECCCCCcHHHHHHHHH
Confidence 3444444 58999999999997654433
No 343
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=78.50 E-value=1.7 Score=44.96 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=17.5
Q ss_pred CeEEEeccCCChhhchHHHHHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQYLYE 368 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~Lle 368 (633)
+.+++.||+|+|||+.+-.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999765444433
No 344
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=78.25 E-value=0.63 Score=49.19 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=18.6
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..+..+.+.||+||||||.+-.
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~ 48 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLM 48 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHH
T ss_pred EcCCCEEEEEcCCCchHHHHHHH
Confidence 34677899999999999987644
No 345
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=78.20 E-value=0.8 Score=43.87 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=15.6
Q ss_pred CeEEEeccCCChhhchHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~ 364 (633)
.+++|+|+.||||||+.-.
T Consensus 5 ~~I~i~G~~GSGKST~~~~ 23 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANA 23 (218)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4688999999999987543
No 346
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=78.09 E-value=1.6 Score=44.11 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=17.5
Q ss_pred CCeEEEeccCCChhhchHHHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Ll 367 (633)
...+++.||+|+|||+.+-.+..
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999976544433
No 347
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=78.02 E-value=0.65 Score=49.54 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=19.0
Q ss_pred HHcCCeEEEeccCCChhhchHHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
+..+..+.+.||+||||||.+-..
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~i 49 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMI 49 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHH
T ss_pred ECCCCEEEEEcCCCchHHHHHHHH
Confidence 346778999999999999875433
No 348
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=78.01 E-value=0.58 Score=49.26 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=18.6
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..+..+.+.||+||||||.+=.
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~ 45 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLEL 45 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHH
T ss_pred EcCCCEEEEECCCCccHHHHHHH
Confidence 34677899999999999987643
No 349
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=78.00 E-value=0.65 Score=49.16 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=18.6
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..+..+.+.||+||||||.+-.
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~ 48 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYT 48 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHH
T ss_pred ECCCCEEEEECCCCchHHHHHHH
Confidence 34677899999999999987643
No 350
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=77.90 E-value=1.2 Score=44.30 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=16.9
Q ss_pred CeEEEeccCCChhhchHHHHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~Ll 367 (633)
..+++.||+|||||+.+-.+..
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 5689999999999976544433
No 351
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=77.73 E-value=0.83 Score=45.48 Aligned_cols=19 Identities=26% Similarity=0.476 Sum_probs=15.7
Q ss_pred CeEEEeccCCChhhchHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~ 364 (633)
..++++|.+||||||+.-.
T Consensus 5 ~lIvl~G~pGSGKSTla~~ 23 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKN 23 (260)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHH
Confidence 4688999999999987543
No 352
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=77.65 E-value=2.1 Score=47.31 Aligned_cols=55 Identities=25% Similarity=0.255 Sum_probs=33.3
Q ss_pred CeEEEeccCCChhhchHHHHHHHhccccCCeeee--cchhHHHHHHHHHHHHHHhCCc
Q 035699 346 PVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGC--TQLRRVAAMSVAARVSQEMGVK 401 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkili--tqPrR~aA~qva~rva~e~g~~ 401 (633)
.+|+++|++|+||||.+...+..... .+.++++ .-|.|.++.......+...++.
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~-~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~ 158 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQR-KGWKTCLICADTFRAGAFDQLKQNATKARIP 158 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEEECCSSSHHHHHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEeccccchhHHHHHHHHhhccCce
Confidence 36888999999999987665543321 1224433 4456666655444455555554
No 353
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=77.56 E-value=1.1 Score=48.12 Aligned_cols=21 Identities=43% Similarity=0.548 Sum_probs=16.2
Q ss_pred CeEEEeccCCChhhchHHHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~L 366 (633)
.+++|+||||||||+......
T Consensus 3 ~~i~i~GptgsGKttla~~La 23 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLA 23 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHH
Confidence 468899999999997654443
No 354
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=77.56 E-value=1.3 Score=45.58 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=18.2
Q ss_pred CCeEEEeccCCChhhchHHHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Ll 367 (633)
+..++|.|++|+|||+.+-.+..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 56799999999999987654443
No 355
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=77.48 E-value=1.2 Score=43.18 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=17.9
Q ss_pred CCeEEEeccCCChhhchHHHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Ll 367 (633)
...+++.|++||||||+.-....
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999998654443
No 356
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=77.34 E-value=1.4 Score=46.29 Aligned_cols=38 Identities=24% Similarity=0.184 Sum_probs=26.5
Q ss_pred HHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeec
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCT 380 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilit 380 (633)
+..+.+++|.|++|||||+...+++.... ..+++++++
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~-~~g~~vlyi 97 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ-REGKTCAFI 97 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEE
Confidence 34578899999999999998777766542 223355543
No 357
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=77.27 E-value=0.69 Score=49.12 Aligned_cols=23 Identities=30% Similarity=0.613 Sum_probs=18.7
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..+..+.|.||+||||||.+=.
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~ 48 (372)
T 1g29_1 26 VKDGEFMILLGPSGCGKTTTLRM 48 (372)
T ss_dssp EETTCEEEEECSTTSSHHHHHHH
T ss_pred EcCCCEEEEECCCCcHHHHHHHH
Confidence 34677899999999999987543
No 358
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=77.23 E-value=1.3 Score=40.73 Aligned_cols=19 Identities=37% Similarity=0.515 Sum_probs=15.2
Q ss_pred eEEEeccCCChhhchHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~ 365 (633)
.++|.|+.||||||..-..
T Consensus 6 ~i~i~G~~GsGKsTla~~L 24 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARAL 24 (175)
T ss_dssp CEEEECCTTSCHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 5888999999999864433
No 359
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=77.22 E-value=3.9 Score=46.58 Aligned_cols=59 Identities=17% Similarity=0.206 Sum_probs=43.8
Q ss_pred HHHHHHcCC-eEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCC
Q 035699 338 LLQAVSEYP-VLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGV 400 (633)
Q Consensus 338 il~al~~~~-~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~ 400 (633)
++..+..+. ..++.|.||||||..+...+... +..++|+.|+..+|.+++.-+...++.
T Consensus 24 l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~~~~----~~~~lvv~~~~~~A~~l~~el~~~~~~ 83 (661)
T 2d7d_A 24 LVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEV----NKPTLVIAHNKTLAGQLYSEFKEFFPN 83 (661)
T ss_dssp HHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH----CCCEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhcCCCcEEEECcCCcHHHHHHHHHHHHh----CCCEEEEECCHHHHHHHHHHHHHHcCC
Confidence 345555553 46678999999998776555432 236899999999999999988877653
No 360
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=77.15 E-value=1.3 Score=44.88 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=18.3
Q ss_pred HcCCeEEEeccCCChhhchHHHHH
Q 035699 343 SEYPVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~lp~~L 366 (633)
.....+++.||+|||||+.+-...
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala 70 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIA 70 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHH
Confidence 345779999999999997654443
No 361
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=77.07 E-value=0.71 Score=49.02 Aligned_cols=23 Identities=35% Similarity=0.631 Sum_probs=18.7
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..+..+.|.||+||||||.+-.
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~ 56 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRM 56 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHH
T ss_pred ECCCCEEEEECCCCChHHHHHHH
Confidence 34677899999999999987543
No 362
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=77.06 E-value=1.2 Score=42.68 Aligned_cols=21 Identities=38% Similarity=0.510 Sum_probs=16.7
Q ss_pred CeEEEeccCCChhhchHHHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~L 366 (633)
..+++.|++||||||+.-...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468889999999999865443
No 363
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=76.78 E-value=0.88 Score=42.61 Aligned_cols=19 Identities=37% Similarity=0.525 Sum_probs=15.3
Q ss_pred CeEEEeccCCChhhchHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~ 364 (633)
.++.|+|++||||||..-.
T Consensus 9 ~~I~i~G~~GsGKST~~~~ 27 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAAL 27 (203)
T ss_dssp EEEEEEECTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3578899999999986543
No 364
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=76.77 E-value=2.3 Score=47.77 Aligned_cols=30 Identities=23% Similarity=0.383 Sum_probs=23.7
Q ss_pred HHHHHHHHcCCeEEEeccCCChhhchHHHH
Q 035699 336 EELLQAVSEYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 336 ~~il~al~~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
+.+-.++..+..+++.||+||||||.+-..
T Consensus 51 ~~l~~~i~~g~~vll~Gp~GtGKTtlar~i 80 (604)
T 3k1j_A 51 EVIKTAANQKRHVLLIGEPGTGKSMLGQAM 80 (604)
T ss_dssp HHHHHHHHTTCCEEEECCTTSSHHHHHHHH
T ss_pred hhccccccCCCEEEEEeCCCCCHHHHHHHH
Confidence 455667778889999999999999765433
No 365
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=76.64 E-value=1.6 Score=44.98 Aligned_cols=36 Identities=19% Similarity=0.225 Sum_probs=23.3
Q ss_pred ChHHHHHHH----HHHHcCC---eEEEeccCCChhhchHHHHH
Q 035699 331 IYPFREELL----QAVSEYP---VLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 331 i~~~q~~il----~al~~~~---~vIi~a~TGSGKTt~lp~~L 366 (633)
+|||+++++ .++.+++ .+++.||.|+|||+..-.+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la 45 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALS 45 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHH
Confidence 345555544 4444543 48999999999997654443
No 366
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=76.49 E-value=2.1 Score=44.01 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=16.9
Q ss_pred CeEEEeccCCChhhchHHHHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~Ll 367 (633)
..+++.||+|+|||+.+-.+..
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999987654443
No 367
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=76.42 E-value=0.9 Score=45.44 Aligned_cols=20 Identities=30% Similarity=0.410 Sum_probs=15.9
Q ss_pred eEEEeccCCChhhchHHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~L 366 (633)
.+++.||+||||||.+-...
T Consensus 75 gvll~Gp~GtGKTtl~~~i~ 94 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVA 94 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHH
Confidence 48999999999998654443
No 368
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=76.42 E-value=1.5 Score=42.71 Aligned_cols=21 Identities=38% Similarity=0.419 Sum_probs=17.4
Q ss_pred cCCeEEEeccCCChhhchHHH
Q 035699 344 EYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~ 364 (633)
.+..+++.|+.||||||++-.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~ 22 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNV 22 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 366789999999999998543
No 369
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=76.31 E-value=0.81 Score=49.55 Aligned_cols=55 Identities=25% Similarity=0.277 Sum_probs=30.5
Q ss_pred CeEEEeccCCChhhchHHHHHHHhccccCCeeee--cchhHHHHHHHHHHHHHHhCCc
Q 035699 346 PVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGC--TQLRRVAAMSVAARVSQEMGVK 401 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkili--tqPrR~aA~qva~rva~e~g~~ 401 (633)
.+++++|++|+||||.+........ ..+.++++ +-|.|.++......++...|+.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~-~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~ 156 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQ-KRGLKPALIAADTYRPAAYEQLKQLAEKIHVP 156 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHH-HHHCCEEEECCSCCCTTGGGSSHHHHHHSSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEeccccCchHHHHHHHhhhccCcc
Confidence 4788999999999987655443321 11223433 4555555443333344444544
No 370
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=76.29 E-value=2.5 Score=43.71 Aligned_cols=44 Identities=23% Similarity=0.284 Sum_probs=27.5
Q ss_pred HcCCeEEEeccCCChhhchHHHHHHHhccccCCeeee--cchhHHHH
Q 035699 343 SEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGC--TQLRRVAA 387 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkili--tqPrR~aA 387 (633)
..+.++.++|++|+||||.+........ ..+++|++ .-+.|..+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~-~~g~kVllid~D~~r~~a 148 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYA-ELGYKVLIAAADTFRAGA 148 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHH-HTTCCEEEEECCCSCHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEeCCCcchhH
Confidence 3456888999999999987655433221 22445554 45555554
No 371
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=76.10 E-value=2.4 Score=46.59 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=19.1
Q ss_pred CCeEEEeccCCChhhchHHHHHHHh
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLYEA 369 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Lle~ 369 (633)
...++++||+|+|||+.+-.+..+.
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3679999999999998765554443
No 372
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=76.08 E-value=0.59 Score=49.25 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=18.7
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..+..+.+.||+||||||.+-.
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~ 50 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRI 50 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHH
T ss_pred ECCCCEEEEECCCCCcHHHHHHH
Confidence 34677899999999999987644
No 373
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=75.99 E-value=7.7 Score=38.27 Aligned_cols=74 Identities=12% Similarity=0.149 Sum_probs=52.6
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCC-----cccc--C
Q 035699 518 IGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATN-----IAET--S 590 (633)
Q Consensus 518 ~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATd-----IAer--G 590 (633)
.+.+||.+|+++-+...++.+...... .+..+..++|+.....+...+.. | ..|||+|+ .+.. +
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~---~-~~Iiv~Tp~~l~~~~~~~~~ 196 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTH-----HVHTYGLIMGGSNRSAEAQKLGN---G-INIIVATPGRLLDHMQNTPG 196 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTT-----CCSCEEEECSSSCHHHHHHHHHH---C-CSEEEECHHHHHHHHHHCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhh-----cCceEEEEECCCCHHHHHHHhcC---C-CCEEEEcHHHHHHHHHccCC
Confidence 467999999999999999999886432 24667888998887766554432 2 57999994 2222 3
Q ss_pred CCCCCccEEE
Q 035699 591 LTIDGIKYVI 600 (633)
Q Consensus 591 LdIp~V~~VI 600 (633)
+.+.++.+||
T Consensus 197 ~~~~~l~~lV 206 (262)
T 3ly5_A 197 FMYKNLQCLV 206 (262)
T ss_dssp CCCTTCCEEE
T ss_pred cccccCCEEE
Confidence 5667777654
No 374
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=75.84 E-value=1.6 Score=46.99 Aligned_cols=32 Identities=31% Similarity=0.418 Sum_probs=23.3
Q ss_pred HHHHHHHHHHcCCeEEEeccCCChhhchHHHH
Q 035699 334 FREELLQAVSEYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 334 ~q~~il~al~~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
+++.+-.+...+.++.+.|++|+||||.+=..
T Consensus 58 i~~~L~~~~~~~~~valvG~nGaGKSTLln~L 89 (413)
T 1tq4_A 58 ISDALKEIDSSVLNVAVTGETGSGKSSFINTL 89 (413)
T ss_dssp HHHHHHHHHHCCEEEEEEECTTSSHHHHHHHH
T ss_pred hhhhhhhcccCCeEEEEECCCCCcHHHHHHHH
Confidence 44555555566668889999999999876543
No 375
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=75.82 E-value=1.3 Score=44.22 Aligned_cols=23 Identities=35% Similarity=0.300 Sum_probs=18.5
Q ss_pred cCCeEEEeccCCChhhchHHHHH
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~L 366 (633)
.+..++|+|+.||||||..-...
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~~La 69 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGKIMA 69 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 37789999999999998755443
No 376
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=75.57 E-value=13 Score=38.49 Aligned_cols=73 Identities=19% Similarity=0.245 Sum_probs=52.5
Q ss_pred CCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCC-----cccc-CCC
Q 035699 519 GDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATN-----IAET-SLT 592 (633)
Q Consensus 519 g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATd-----IAer-GLd 592 (633)
..+||.+|+++-+..+++.+...... .++.++.+||+.+...+...+.. ...|+|||+ .... .+.
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~ 172 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYR-----SRVRPCVVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIG 172 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTT-----SSCCEEEECSSSCHHHHHHHHTT----CCSEEEECHHHHHHHHHTTSBC
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCc-----CCceEEEEECCCCHHHHHHHhhC----CCCEEEEChHHHHHHHHcCCcC
Confidence 46999999999999999998876422 36788999999988776655532 257999996 2222 245
Q ss_pred CCCccEEE
Q 035699 593 IDGIKYVI 600 (633)
Q Consensus 593 Ip~V~~VI 600 (633)
..++++||
T Consensus 173 ~~~~~~iV 180 (417)
T 2i4i_A 173 LDFCKYLV 180 (417)
T ss_dssp CTTCCEEE
T ss_pred hhhCcEEE
Confidence 56666555
No 377
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=75.55 E-value=1.5 Score=44.84 Aligned_cols=27 Identities=30% Similarity=0.266 Sum_probs=22.4
Q ss_pred HcCCeEEEeccCCChhhchHHHHHHHh
Q 035699 343 SEYPVLVIVGETGSGKTTQIPQYLYEA 369 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~lp~~Lle~ 369 (633)
..+.+++|.|++|||||+...+++...
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 446889999999999998888877653
No 378
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=75.34 E-value=0.95 Score=46.38 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=17.9
Q ss_pred HcCCeEEEeccCCChhhchHHHH
Q 035699 343 SEYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
..+.++.|.|++||||||.+-..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L 100 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVL 100 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHH
Confidence 34567888999999999876433
No 379
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=75.05 E-value=0.95 Score=47.63 Aligned_cols=17 Identities=41% Similarity=0.821 Sum_probs=14.4
Q ss_pred CeEEEeccCCChhhchH
Q 035699 346 PVLVIVGETGSGKTTQI 362 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~l 362 (633)
...+|+|+||+|||+.+
T Consensus 26 gl~vi~G~NGaGKT~il 42 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46789999999999864
No 380
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=74.89 E-value=0.89 Score=48.21 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=18.9
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..+.++.|.||+||||||.+-.
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~ 73 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRC 73 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHH
T ss_pred EcCCCEEEEEcCCCchHHHHHHH
Confidence 45678899999999999987543
No 381
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=74.84 E-value=1 Score=48.09 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=19.6
Q ss_pred HHcCCeEEEeccCCChhhchHHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
+..+..+.|.||+||||||.+-..
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~i 67 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAF 67 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHH
T ss_pred EcCCCEEEEECCCCChHHHHHHHH
Confidence 556788999999999999876443
No 382
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=74.78 E-value=2.8 Score=41.95 Aligned_cols=19 Identities=37% Similarity=0.545 Sum_probs=15.1
Q ss_pred eEEEeccCCChhhchHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~ 365 (633)
.+++.||+|+|||+.+-.+
T Consensus 44 ~~ll~G~~G~GKt~la~~l 62 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCL 62 (323)
T ss_dssp CEEEECSTTSSHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHH
Confidence 3899999999999765433
No 383
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=74.77 E-value=2.7 Score=50.86 Aligned_cols=78 Identities=13% Similarity=0.146 Sum_probs=57.4
Q ss_pred CCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCc-----cccC
Q 035699 516 EPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNI-----AETS 590 (633)
Q Consensus 516 ~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdI-----AerG 590 (633)
...+.+||.+||++-+..+++.+... + ..++.+..+||+++..++...+.....|...|||+|+= +..
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l----~--~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~- 191 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKL----A--DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK- 191 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTT----S--CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHh----h--CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-
Confidence 34578999999999999999999873 2 24678999999999866666666666677789999962 121
Q ss_pred CCCCCccEEE
Q 035699 591 LTIDGIKYVI 600 (633)
Q Consensus 591 LdIp~V~~VI 600 (633)
+...++.+||
T Consensus 192 l~~~~l~~lV 201 (1104)
T 4ddu_A 192 LSQKRFDFVF 201 (1104)
T ss_dssp HHTSCCSEEE
T ss_pred hcccCcCEEE
Confidence 3445666554
No 384
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=74.65 E-value=1.1 Score=45.25 Aligned_cols=18 Identities=33% Similarity=0.693 Sum_probs=14.7
Q ss_pred eEEEeccCCChhhchHHH
Q 035699 347 VLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~ 364 (633)
.+.|+|++||||||.+=.
T Consensus 4 ~v~lvG~nGaGKSTLln~ 21 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNT 21 (270)
T ss_dssp EEEEEESSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 477899999999987543
No 385
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=74.64 E-value=1.1 Score=45.29 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=16.9
Q ss_pred CeEEEeccCCChhhchHHHHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~Ll 367 (633)
..+++.||+||||||.+-....
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3489999999999987654443
No 386
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=74.59 E-value=2.6 Score=44.00 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=18.8
Q ss_pred cCCeEEEeccCCChhhchHHHHHHH
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYLYE 368 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~Lle 368 (633)
....+++.||+|||||+.+-.+...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999765544433
No 387
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=74.53 E-value=11 Score=39.99 Aligned_cols=74 Identities=15% Similarity=0.187 Sum_probs=54.0
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCC-----cccc-CC
Q 035699 518 IGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATN-----IAET-SL 591 (633)
Q Consensus 518 ~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATd-----IAer-GL 591 (633)
...+||.+||++-+..+++.+...... .++.+..+||+.+...+...+.. ...|||||+ ...+ .+
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~-----~~~~~~~~~gg~~~~~~~~~l~~----~~~Ivv~Tp~~l~~~l~~~~~ 199 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFE-----SYLKIGIVYGGTSFRHQNECITR----GCHVVIATPGRLLDFVDRTFI 199 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTT-----SSCCCCEECTTSCHHHHHHHHTT----CCSEEEECHHHHHHHHHTTSC
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhcc-----CCcEEEEEECCCCHHHHHHHhhc----CCCEEEEChHHHHHHHHhCCc
Confidence 357999999999999999988876422 35678889999998777666542 357999995 2233 34
Q ss_pred CCCCccEEE
Q 035699 592 TIDGIKYVI 600 (633)
Q Consensus 592 dIp~V~~VI 600 (633)
+..++++||
T Consensus 200 ~l~~~~~lV 208 (434)
T 2db3_A 200 TFEDTRFVV 208 (434)
T ss_dssp CCTTCCEEE
T ss_pred ccccCCeEE
Confidence 566777665
No 388
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=74.53 E-value=1.2 Score=42.82 Aligned_cols=18 Identities=33% Similarity=0.709 Sum_probs=14.9
Q ss_pred CeEEEeccCCChhhchHH
Q 035699 346 PVLVIVGETGSGKTTQIP 363 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp 363 (633)
...+|+|++|||||+.+-
T Consensus 24 ~~~~I~G~NgsGKStil~ 41 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLD 41 (203)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHH
Confidence 467889999999998643
No 389
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=74.50 E-value=1.9 Score=48.33 Aligned_cols=24 Identities=38% Similarity=0.688 Sum_probs=18.5
Q ss_pred cCCeEEEeccCCChhhchHHHHHH
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~Ll 367 (633)
....++|.|.||||||+.+-.++.
T Consensus 213 k~pHlLIaG~TGSGKS~~L~tlI~ 236 (574)
T 2iut_A 213 KMPHLLVAGTTGSGKSVGVNAMLL 236 (574)
T ss_dssp GSCCEEEECCTTSSHHHHHHHHHH
T ss_pred hCCeeEEECCCCCCHHHHHHHHHH
Confidence 346689999999999987655444
No 390
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=74.41 E-value=1.6 Score=47.50 Aligned_cols=20 Identities=35% Similarity=0.456 Sum_probs=16.0
Q ss_pred cCCeEEEeccCCChhhchHH
Q 035699 344 EYPVLVIVGETGSGKTTQIP 363 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp 363 (633)
...+++++||+|+|||+.+-
T Consensus 200 ~~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHH
Confidence 34678999999999997543
No 391
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=74.23 E-value=1.6 Score=44.60 Aligned_cols=18 Identities=28% Similarity=0.647 Sum_probs=14.6
Q ss_pred CeEEEeccCCChhhchHH
Q 035699 346 PVLVIVGETGSGKTTQIP 363 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp 363 (633)
..+++.||+|||||+.+-
T Consensus 46 ~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp CCEEEECCGGGCTTHHHH
T ss_pred ceEEEECCCCccHHHHHH
Confidence 459999999999996543
No 392
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=74.19 E-value=12 Score=38.53 Aligned_cols=75 Identities=7% Similarity=0.079 Sum_probs=52.8
Q ss_pred CCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCC-----cccc-C
Q 035699 517 PIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATN-----IAET-S 590 (633)
Q Consensus 517 ~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATd-----IAer-G 590 (633)
..+.+||.+|++.-+...++.+...... .++.+..++|+.....+...+. +...|+|+|. ...+ .
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~----~~~~Ivv~T~~~l~~~~~~~~ 158 (400)
T 1s2m_A 88 NKIQALIMVPTRELALQTSQVVRTLGKH-----CGISCMVTTGGTNLRDDILRLN----ETVHILVGTPGRVLDLASRKV 158 (400)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTT-----TTCCEEEECSSSCHHHHHHHTT----SCCSEEEECHHHHHHHHHTTC
T ss_pred CCccEEEEcCCHHHHHHHHHHHHHHhcc-----cCceEEEEeCCcchHHHHHHhc----CCCCEEEEchHHHHHHHHhCC
Confidence 3468999999999999999988876432 2567888899987766544432 3457999994 2333 3
Q ss_pred CCCCCccEEE
Q 035699 591 LTIDGIKYVI 600 (633)
Q Consensus 591 LdIp~V~~VI 600 (633)
+.+.++++||
T Consensus 159 ~~~~~~~~vI 168 (400)
T 1s2m_A 159 ADLSDCSLFI 168 (400)
T ss_dssp SCCTTCCEEE
T ss_pred cccccCCEEE
Confidence 5667777654
No 393
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=74.12 E-value=17 Score=36.51 Aligned_cols=82 Identities=16% Similarity=0.238 Sum_probs=54.7
Q ss_pred HHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCcc-
Q 035699 509 ALQIHVNEPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIA- 587 (633)
Q Consensus 509 l~~i~~~~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIA- 587 (633)
++......+...+||.+|++.-+..+++.+...... .++.+..++|+.....+...+. ...|+|+|.-.
T Consensus 65 ~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~-----~~~iiv~T~~~l 134 (367)
T 1hv8_A 65 LIELVNENNGIEAIILTPTRELAIQVADEIESLKGN-----KNLKIAKIYGGKAIYPQIKALK-----NANIVVGTPGRI 134 (367)
T ss_dssp HHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCS-----SCCCEEEECTTSCHHHHHHHHH-----TCSEEEECHHHH
T ss_pred HHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCC-----CCceEEEEECCcchHHHHhhcC-----CCCEEEecHHHH
Confidence 333333334568999999999999999999886422 3567888999988766655553 24799999521
Q ss_pred -----ccCCCCCCccEEE
Q 035699 588 -----ETSLTIDGIKYVI 600 (633)
Q Consensus 588 -----erGLdIp~V~~VI 600 (633)
...+.+.++++||
T Consensus 135 ~~~~~~~~~~~~~~~~iI 152 (367)
T 1hv8_A 135 LDHINRGTLNLKNVKYFI 152 (367)
T ss_dssp HHHHHTTCSCTTSCCEEE
T ss_pred HHHHHcCCcccccCCEEE
Confidence 1224455555544
No 394
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=74.04 E-value=1.9 Score=49.19 Aligned_cols=57 Identities=19% Similarity=0.255 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHc--CCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHH
Q 035699 332 YPFREELLQAVSE--YPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAA 392 (633)
Q Consensus 332 ~~~q~~il~al~~--~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~ 392 (633)
..-|.+++..+.. ..+.+|+|.-|.|||+++...+.... +.++||.|+..++..+..
T Consensus 177 T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~----~~~~vtAP~~~a~~~l~~ 235 (671)
T 2zpa_A 177 QPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA----GRAIVTAPAKASTDVLAQ 235 (671)
T ss_dssp CHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS----SCEEEECSSCCSCHHHHH
T ss_pred CHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH----hCcEEECCCHHHHHHHHH
Confidence 3456666676666 45689999999999988777766542 257999999988776554
No 395
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=74.04 E-value=1.2 Score=43.40 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=17.5
Q ss_pred cCCeEEEeccCCChhhchHHH
Q 035699 344 EYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~ 364 (633)
.+..+++.|+.||||||++-.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~ 25 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDY 25 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHH
Confidence 456789999999999998644
No 396
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=74.01 E-value=5.6 Score=37.77 Aligned_cols=78 Identities=6% Similarity=0.011 Sum_probs=50.6
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCC-----cccc-CC
Q 035699 518 IGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATN-----IAET-SL 591 (633)
Q Consensus 518 ~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATd-----IAer-GL 591 (633)
.+.+||.+|+++-+..+++.+.......+. ..++.+..++|+.+...+...+ .+...|+|+|+ ...+ .+
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~----~~~~~Iiv~Tp~~l~~~l~~~~~ 146 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPK-DRMIVARCLIGGTDKQKALEKL----NVQPHIVIGTPGRINDFIREQAL 146 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCG-GGCCCEEEECCCSHHHHTTCCC----SSCCSEEEECHHHHHHHHHTTCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhccc-ccceEEEEEeCCCCHHHHHHHc----CCCCCEEEeCHHHHHHHHHcCCC
Confidence 468999999999999999988876533211 1156788889987655433222 23457999995 2232 34
Q ss_pred CCCCccEEE
Q 035699 592 TIDGIKYVI 600 (633)
Q Consensus 592 dIp~V~~VI 600 (633)
...++++||
T Consensus 147 ~~~~~~~lV 155 (219)
T 1q0u_A 147 DVHTAHILV 155 (219)
T ss_dssp CGGGCCEEE
T ss_pred CcCcceEEE
Confidence 455666544
No 397
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=73.89 E-value=1.9 Score=45.55 Aligned_cols=38 Identities=21% Similarity=0.212 Sum_probs=26.3
Q ss_pred HHcCCeEEEeccCCChhhchHHHHHHHhccccCCeeeec
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCT 380 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilit 380 (633)
+..+.+++|.|++|||||+...+++.... ..+++++++
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~-~~g~~vlyi 108 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQ-KAGGTCAFI 108 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHH-HCCCeEEEE
Confidence 34568899999999999988777766542 223355543
No 398
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=73.86 E-value=1.8 Score=43.33 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=15.2
Q ss_pred eEEEeccCCChhhchHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~ 365 (633)
.+++.||+|+|||+.+-.+
T Consensus 40 ~~ll~G~~G~GKt~la~~l 58 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIAL 58 (319)
T ss_dssp CEEEESSSSSSHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHH
Confidence 4899999999999765433
No 399
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=73.72 E-value=1.1 Score=42.04 Aligned_cols=19 Identities=16% Similarity=0.349 Sum_probs=15.8
Q ss_pred cCCeEEEeccCCChhhchH
Q 035699 344 EYPVLVIVGETGSGKTTQI 362 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~l 362 (633)
.+..++++|++|+||||.+
T Consensus 25 ~~~~v~lvG~~g~GKSTLl 43 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSAL 43 (210)
T ss_dssp CSEEEEEEECTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4556889999999999765
No 400
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=73.51 E-value=2.1 Score=40.98 Aligned_cols=17 Identities=47% Similarity=0.653 Sum_probs=14.3
Q ss_pred EEEeccCCChhhchHHH
Q 035699 348 LVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 348 vIi~a~TGSGKTt~lp~ 364 (633)
+++.|.-|||||||+-.
T Consensus 3 I~~EG~DGsGKsTq~~~ 19 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQL 19 (197)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67899999999998543
No 401
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=73.50 E-value=1.4 Score=43.62 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=17.3
Q ss_pred CCeEEEeccCCChhhchHHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~L 366 (633)
...++++|++||||||..-...
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~ 53 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQ 53 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4578899999999998755443
No 402
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=73.46 E-value=8.9 Score=39.27 Aligned_cols=74 Identities=12% Similarity=0.117 Sum_probs=52.1
Q ss_pred CCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCcc------ccC
Q 035699 517 PIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIA------ETS 590 (633)
Q Consensus 517 ~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIA------erG 590 (633)
..+.+||.+|++.-+...++.+...... .++.+..+||+.....+...+. ...|+|+|.=. ...
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~ 157 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFH-----MDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRR 157 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTT-----SCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTS
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhcc-----CCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCC
Confidence 4568999999999999999988775422 3577889999988877666554 24699999421 223
Q ss_pred CCCCCccEEE
Q 035699 591 LTIDGIKYVI 600 (633)
Q Consensus 591 LdIp~V~~VI 600 (633)
+...++++||
T Consensus 158 ~~~~~~~~vI 167 (394)
T 1fuu_A 158 FRTDKIKMFI 167 (394)
T ss_dssp SCCTTCCEEE
T ss_pred cchhhCcEEE
Confidence 4455665544
No 403
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=73.43 E-value=1.8 Score=43.97 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=16.0
Q ss_pred CeEEEeccCCChhhchHHHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~L 366 (633)
..+++.||+|||||+..-...
T Consensus 37 ~~lLl~GppGtGKT~la~aiA 57 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVF 57 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 568889999999997544333
No 404
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=73.31 E-value=1.5 Score=44.75 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=15.0
Q ss_pred CCeEEEeccCCChhhchH
Q 035699 345 YPVLVIVGETGSGKTTQI 362 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~l 362 (633)
+.+|.|+|++||||||.+
T Consensus 31 ~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456788999999999864
No 405
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=73.30 E-value=1.8 Score=41.64 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=17.0
Q ss_pred eEEEeccCCChhhchHHHHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQYLYE 368 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~Lle 368 (633)
..+++|++|||||+.....+..
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5789999999999876554443
No 406
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=73.25 E-value=1.3 Score=44.64 Aligned_cols=19 Identities=32% Similarity=0.683 Sum_probs=15.7
Q ss_pred eEEEeccCCChhhchHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~ 365 (633)
.+++.|++||||||+.-..
T Consensus 4 ~I~l~G~~GsGKST~a~~L 22 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREF 22 (301)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999976543
No 407
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=73.22 E-value=2 Score=44.02 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=17.9
Q ss_pred CCeEEEeccCCChhhchHHHHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLYE 368 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Lle 368 (633)
...+++.||+|||||+.+-.+..+
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 356999999999999765444333
No 408
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=73.17 E-value=1.7 Score=42.45 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=16.0
Q ss_pred CeEEEeccCCChhhchHHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~ 365 (633)
..+++.||+|||||+.+...
T Consensus 59 n~ili~GPPGtGKTt~a~al 78 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSF 78 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36999999999999765433
No 409
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=72.87 E-value=1.9 Score=44.34 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=18.0
Q ss_pred CCeEEEeccCCChhhchHHHHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLYE 368 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Lle 368 (633)
...+++.||+|||||+.+-.+..+
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 367999999999999765544433
No 410
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=72.81 E-value=2 Score=44.79 Aligned_cols=35 Identities=11% Similarity=-0.042 Sum_probs=25.4
Q ss_pred eEEEeccCCChhhchHHHHHHHhccc-cCCeeeecc
Q 035699 347 VLVIVGETGSGKTTQIPQYLYEAGYT-KQGKIGCTQ 381 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~Lle~~~~-~~gkilitq 381 (633)
.+.|.||+||||||...+++...... .+++++++.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 78999999999999888887765322 134666543
No 411
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=72.81 E-value=1.4 Score=46.14 Aligned_cols=19 Identities=37% Similarity=0.580 Sum_probs=15.6
Q ss_pred CCeEEEeccCCChhhchHH
Q 035699 345 YPVLVIVGETGSGKTTQIP 363 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp 363 (633)
...++++||+|||||+..-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4569999999999996543
No 412
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=72.70 E-value=1.1 Score=50.32 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=18.5
Q ss_pred HHcCCeEEEeccCCChhhchHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIP 363 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp 363 (633)
+..++.+.|+||+||||||.+-
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~ 385 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLIN 385 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHT
T ss_pred ECCCCEEEEECCCCChHHHHHH
Confidence 4567889999999999998753
No 413
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=72.39 E-value=1.4 Score=43.45 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=15.4
Q ss_pred HcCCeEEEeccCCChhhchHHH
Q 035699 343 SEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
..+..+++.|+.||||||++-.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~ 44 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQW 44 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHH
Confidence 4577899999999999998543
No 414
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=71.97 E-value=3 Score=43.83 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=17.8
Q ss_pred CCeEEEeccCCChhhchHHHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Ll 367 (633)
...+++.||+|+|||+.+-.+..
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999976544433
No 415
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=71.84 E-value=1.3 Score=45.86 Aligned_cols=18 Identities=33% Similarity=0.709 Sum_probs=14.9
Q ss_pred CeEEEeccCCChhhchHH
Q 035699 346 PVLVIVGETGSGKTTQIP 363 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp 363 (633)
...+|+||+|||||+.+=
T Consensus 24 ~~~~i~G~NGsGKS~lle 41 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLD 41 (339)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 467889999999998643
No 416
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=71.77 E-value=2.7 Score=41.06 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=18.7
Q ss_pred CeEEEeccCCChhhchHHHHHHHh
Q 035699 346 PVLVIVGETGSGKTTQIPQYLYEA 369 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~Lle~ 369 (633)
.++++.|..|+||||.+.......
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 467889999999999877665443
No 417
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=71.71 E-value=1.1 Score=42.78 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=16.1
Q ss_pred CCeEEEeccCCChhhchHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~ 365 (633)
|-++.++|..||||||..-..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L 32 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEIL 32 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 456778999999999875433
No 418
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=71.65 E-value=1.6 Score=42.61 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=18.8
Q ss_pred cCCeEEEeccCCChhhchHHHHH
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~L 366 (633)
.+..+++.|+.||||||++-...
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~ 26 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILY 26 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999866543
No 419
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=71.44 E-value=1.2 Score=50.22 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=19.2
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++.+.|+||+||||||.+-.
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~ 400 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNL 400 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHH
Confidence 45678899999999999987643
No 420
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=71.34 E-value=8.9 Score=40.00 Aligned_cols=75 Identities=15% Similarity=0.252 Sum_probs=53.9
Q ss_pred CCCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCc------ccc
Q 035699 516 EPIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNI------AET 589 (633)
Q Consensus 516 ~~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdI------Aer 589 (633)
.+.+++||.+|+..-+...++.+...+ +.+...+..+||+.....+...+.. ..|+|+|.= ...
T Consensus 50 ~~~~~~liv~P~~~L~~q~~~~~~~~~-----~~~~~~v~~~~g~~~~~~~~~~~~~-----~~ivv~T~~~l~~~~~~~ 119 (494)
T 1wp9_A 50 KYGGKVLMLAPTKPLVLQHAESFRRLF-----NLPPEKIVALTGEKSPEERSKAWAR-----AKVIVATPQTIENDLLAG 119 (494)
T ss_dssp HSCSCEEEECSSHHHHHHHHHHHHHHB-----CSCGGGEEEECSCSCHHHHHHHHHH-----CSEEEECHHHHHHHHHTT
T ss_pred cCCCeEEEEECCHHHHHHHHHHHHHHh-----CcchhheEEeeCCcchhhhhhhccC-----CCEEEecHHHHHHHHhcC
Confidence 346789999999999999988888764 1234588999999998877666542 469999952 112
Q ss_pred CCCCCCccEEE
Q 035699 590 SLTIDGIKYVI 600 (633)
Q Consensus 590 GLdIp~V~~VI 600 (633)
.+...++++||
T Consensus 120 ~~~~~~~~~vI 130 (494)
T 1wp9_A 120 RISLEDVSLIV 130 (494)
T ss_dssp SCCTTSCSEEE
T ss_pred CcchhhceEEE
Confidence 35566776554
No 421
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=71.18 E-value=3.8 Score=44.11 Aligned_cols=21 Identities=38% Similarity=0.555 Sum_probs=16.7
Q ss_pred CCeEEEeccCCChhhchHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~ 365 (633)
...+++.||+|+|||+.+-..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~ai 150 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSI 150 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 457999999999999865433
No 422
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=71.04 E-value=2.4 Score=39.73 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=15.6
Q ss_pred eEEEeccCCChhhchHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~ 365 (633)
++.|.|+.||||||..-..
T Consensus 4 ~i~i~G~~GsGKst~~~~l 22 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRV 22 (208)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6889999999999875543
No 423
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=71.03 E-value=2 Score=38.06 Aligned_cols=20 Identities=35% Similarity=0.571 Sum_probs=16.3
Q ss_pred eEEEeccCCChhhchHHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~L 366 (633)
.+++.|++|+|||+.+-.++
T Consensus 3 ki~v~G~~~~GKSsli~~l~ 22 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLL 22 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 37889999999998766555
No 424
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=70.94 E-value=1.2 Score=50.00 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=19.1
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++.+.|+||+||||||.+-.
T Consensus 366 i~~G~~~~ivG~sGsGKSTLl~~ 388 (582)
T 3b60_A 366 IPAGKTVALVGRSGSGKSTIASL 388 (582)
T ss_dssp ECTTCEEEEEECTTSSHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45678899999999999987654
No 425
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=70.89 E-value=6.4 Score=37.99 Aligned_cols=74 Identities=12% Similarity=0.210 Sum_probs=49.5
Q ss_pred CCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCC-----cccc---C
Q 035699 519 GDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATN-----IAET---S 590 (633)
Q Consensus 519 g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATd-----IAer---G 590 (633)
..+||.+|+++-+..+++.+...... .++.+..+||+.... ..+.....+...|||+|+ .... .
T Consensus 99 ~~~lil~Pt~~L~~q~~~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~ 170 (245)
T 3dkp_A 99 FRALIISPTRELASQIHRELIKISEG-----TGFRIHMIHKAAVAA---KKFGPKSSKKFDILVTTPNRLIYLLKQDPPG 170 (245)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTT-----SCCCEECCCHHHHHH---TTTSTTSCCCCCEEEECHHHHHHHHHSSSCS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhcc-----cCceEEEEecCccHH---HHhhhhhcCCCCEEEECHHHHHHHHHhCCCC
Confidence 47999999999999999999886432 256677777763322 223333455678999993 2222 4
Q ss_pred CCCCCccEEE
Q 035699 591 LTIDGIKYVI 600 (633)
Q Consensus 591 LdIp~V~~VI 600 (633)
+++.++.+||
T Consensus 171 ~~~~~~~~lV 180 (245)
T 3dkp_A 171 IDLASVEWLV 180 (245)
T ss_dssp CCCTTCCEEE
T ss_pred cccccCcEEE
Confidence 6777777654
No 426
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=70.86 E-value=1.6 Score=43.30 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=16.5
Q ss_pred cCCeEEEeccCCChhhchHH
Q 035699 344 EYPVLVIVGETGSGKTTQIP 363 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp 363 (633)
....|+|.|..||||||+.-
T Consensus 23 ~~~~I~ieG~~GsGKST~~~ 42 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVN 42 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHH
Confidence 34578899999999999864
No 427
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=70.69 E-value=2.1 Score=40.60 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=19.8
Q ss_pred CCeEEEeccCCChhhchHHHHHHHh
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLYEA 369 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Lle~ 369 (633)
...++++|.+|+||||.+-.++...
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3578889999999999877666553
No 428
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=70.62 E-value=1.2 Score=48.49 Aligned_cols=24 Identities=38% Similarity=0.434 Sum_probs=19.6
Q ss_pred HHHcCCeEEEeccCCChhhchHHH
Q 035699 341 AVSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 341 al~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
.+..+..+.|.|++||||||.+-.
T Consensus 134 ~i~~Ge~v~IvGpnGsGKSTLlr~ 157 (460)
T 2npi_A 134 SNFEGPRVVIVGGSQTGKTSLSRT 157 (460)
T ss_dssp HSSSCCCEEEEESTTSSHHHHHHH
T ss_pred EeCCCCEEEEECCCCCCHHHHHHH
Confidence 355788999999999999987543
No 429
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=70.58 E-value=2.3 Score=43.05 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=19.8
Q ss_pred CeEEEeccCCChhhchHHHHHHHh
Q 035699 346 PVLVIVGETGSGKTTQIPQYLYEA 369 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~Lle~ 369 (633)
.+++|.|+.|+|||+.+-.++...
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999998877666543
No 430
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=70.58 E-value=1.9 Score=37.99 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=16.7
Q ss_pred eEEEeccCCChhhchHHHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~Ll 367 (633)
.|++.|++|+|||+.+-.++.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378899999999987765553
No 431
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=70.56 E-value=2.1 Score=42.34 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=18.0
Q ss_pred cCCeEEEeccCCChhhchHHHH
Q 035699 344 EYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
.+..+++.|+.||||||++-..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l 47 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVV 47 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4678999999999999985443
No 432
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=70.53 E-value=5.9 Score=40.14 Aligned_cols=71 Identities=13% Similarity=0.063 Sum_probs=48.2
Q ss_pred CCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCcc------c-cCC
Q 035699 519 GDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNIA------E-TSL 591 (633)
Q Consensus 519 g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdIA------e-rGL 591 (633)
..+||.+||++-+..+++.+.... ...+++.+..++|+.....+ ......|||||+=. . ..+
T Consensus 163 ~~~lil~PtreLa~Q~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~ 231 (300)
T 3fmo_B 163 PQCLCLSPTYELALQTGKVIEQMG----KFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFI 231 (300)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHT----TTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCC
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHH----hhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCC
Confidence 479999999999999998887753 22346677777777543211 13345799999732 1 356
Q ss_pred CCCCccEEE
Q 035699 592 TIDGIKYVI 600 (633)
Q Consensus 592 dIp~V~~VI 600 (633)
++.++.+||
T Consensus 232 ~l~~l~~lV 240 (300)
T 3fmo_B 232 DPKKIKVFV 240 (300)
T ss_dssp CGGGCSEEE
T ss_pred ChhhceEEE
Confidence 677787765
No 433
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=70.48 E-value=1.8 Score=46.04 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=19.8
Q ss_pred HHcCCeEEEeccCCChhhchHHHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~L 366 (633)
+..+..+++.||+||||||.+-...
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~ 190 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALL 190 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHH
Confidence 4467889999999999998765443
No 434
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=70.43 E-value=1.6 Score=48.76 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=19.8
Q ss_pred HHcCCeEEEeccCCChhhchHHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~ 365 (633)
+..++.+.|+||+||||||.+-..
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~l 389 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANLF 389 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHH
Confidence 557888999999999999876543
No 435
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=70.30 E-value=2.6 Score=48.38 Aligned_cols=27 Identities=41% Similarity=0.608 Sum_probs=21.5
Q ss_pred HcCCeEEEeccCCChhhch---HHHHHHHh
Q 035699 343 SEYPVLVIVGETGSGKTTQ---IPQYLYEA 369 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~---lp~~Lle~ 369 (633)
..+|.|||+|+.|||||.. +.+||...
T Consensus 92 ~~nQsIiisGESGAGKTe~tK~i~~yla~~ 121 (697)
T 1lkx_A 92 QENQCVIISGESGAGKTEASKKIMQFLTFV 121 (697)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred CCCcEEEecCCCCCCchhhHHHHHHHHHhh
Confidence 3578999999999999975 66676654
No 436
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=70.14 E-value=2.1 Score=44.68 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=20.6
Q ss_pred HHcCCeEEEeccCCChhhchHHHHHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQYLYE 368 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~~Lle 368 (633)
+..+..++|.|++|||||+...+++..
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 334567899999999999877766554
No 437
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=70.12 E-value=9 Score=38.20 Aligned_cols=73 Identities=16% Similarity=0.229 Sum_probs=51.9
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCCc------cccCC
Q 035699 518 IGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATNI------AETSL 591 (633)
Q Consensus 518 ~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATdI------AerGL 591 (633)
.+.+||.+|++.-+...++.+...... .+..+..+||+.+...+...+.. ..|+|+|+- ....+
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-----~~i~v~T~~~l~~~~~~~~~ 125 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRY-----MDTKVAEVYGGMPYKAQINRVRN-----ADIVVATPGRLLDLWSKGVI 125 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTT-----SCCCEEEECTTSCHHHHHHHHTT-----CSEEEECHHHHHHHHHTTSC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhh-----cCCcEEEEECCcchHHHHhhcCC-----CCEEEECHHHHHHHHHcCCc
Confidence 568999999999999999999875322 25678899999988776665543 469999952 12234
Q ss_pred CCCCccEEE
Q 035699 592 TIDGIKYVI 600 (633)
Q Consensus 592 dIp~V~~VI 600 (633)
...++++||
T Consensus 126 ~~~~~~~iV 134 (337)
T 2z0m_A 126 DLSSFEIVI 134 (337)
T ss_dssp CGGGCSEEE
T ss_pred chhhCcEEE
Confidence 455565544
No 438
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=70.08 E-value=1.6 Score=44.90 Aligned_cols=19 Identities=37% Similarity=0.639 Sum_probs=15.5
Q ss_pred EEEeccCCChhhchHHHHH
Q 035699 348 LVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 348 vIi~a~TGSGKTt~lp~~L 366 (633)
+++.||+|+||||.+-...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la 57 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALL 57 (354)
T ss_dssp EEEECSTTSSHHHHHHTHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 8999999999998754443
No 439
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=69.99 E-value=1.3 Score=49.62 Aligned_cols=22 Identities=41% Similarity=0.656 Sum_probs=18.6
Q ss_pred HHcCCeEEEeccCCChhhchHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIP 363 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp 363 (633)
+..++.+.|+||+||||||.+-
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~ 387 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMN 387 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4567889999999999998764
No 440
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=69.98 E-value=2.4 Score=44.30 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=17.7
Q ss_pred CCeEEEeccCCChhhchHHHHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLYE 368 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Lle 368 (633)
...+++.||+|||||+.+-.+..+
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHH
Confidence 356899999999999765544433
No 441
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=69.97 E-value=3.7 Score=44.36 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=17.4
Q ss_pred CeEEEeccCCChhhchHHHHHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQYLYE 368 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~Lle 368 (633)
..+++.||+|||||+..-.....
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 57999999999999765444333
No 442
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=69.95 E-value=2.1 Score=39.48 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=17.5
Q ss_pred CeEEEeccCCChhhchHHHHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~Ll 367 (633)
-.|++.|++|+|||+.+-.++.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4688999999999987765543
No 443
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=69.95 E-value=2 Score=47.45 Aligned_cols=28 Identities=21% Similarity=0.480 Sum_probs=22.5
Q ss_pred HHHcCCeEEEeccCCChhhchHHHHHHH
Q 035699 341 AVSEYPVLVIVGETGSGKTTQIPQYLYE 368 (633)
Q Consensus 341 al~~~~~vIi~a~TGSGKTt~lp~~Lle 368 (633)
-+..+.+++|.|++||||||.+-+++..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3456788999999999999987776543
No 444
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=69.82 E-value=1.4 Score=43.41 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=16.1
Q ss_pred CeEEEeccCCChhhchHHHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~L 366 (633)
..+++.||+|||||+.+-.+.
T Consensus 45 ~~vll~G~~GtGKT~la~~la 65 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVA 65 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHH
Confidence 458899999999997654433
No 445
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=69.79 E-value=2.5 Score=41.81 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=17.3
Q ss_pred CCeEEEeccCCChhhchHHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~L 366 (633)
.-++.|.|++||||||..-...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4578899999999998765443
No 446
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=69.66 E-value=2.1 Score=40.00 Aligned_cols=20 Identities=25% Similarity=0.742 Sum_probs=15.9
Q ss_pred eEEEeccCCChhhchHHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~L 366 (633)
.+++.|++|+||||.+-.++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~ 26 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFT 26 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 36789999999998765554
No 447
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=69.56 E-value=2.2 Score=37.93 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=16.5
Q ss_pred eEEEeccCCChhhchHHHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~Ll 367 (633)
.|++.|++|+|||+.+-.++.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 378899999999987665543
No 448
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=69.41 E-value=1.3 Score=49.82 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=19.1
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..++.+.|+||+||||||.+-.
T Consensus 367 i~~G~~~~ivG~sGsGKSTLl~~ 389 (595)
T 2yl4_A 367 IPSGSVTALVGPSGSGKSTVLSL 389 (595)
T ss_dssp ECTTCEEEEECCTTSSSTHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45678899999999999987654
No 449
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=69.29 E-value=6.5 Score=44.05 Aligned_cols=59 Identities=17% Similarity=0.073 Sum_probs=50.6
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCC--CCCCeeEEEeCC
Q 035699 518 IGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPT--PEGARKVVLATN 585 (633)
Q Consensus 518 ~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f--~~g~rkVLvATd 585 (633)
+|.+||.+|++.-+....+.|... ++.+..+||+++..++..++... ..+..+||++|+
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~---------gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQL---------GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHH---------TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhc---------CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 578999999999999999888874 67889999999999888776654 467789999998
No 450
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=69.06 E-value=1.7 Score=41.90 Aligned_cols=19 Identities=42% Similarity=0.618 Sum_probs=15.8
Q ss_pred CeEEEeccCCChhhchHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~ 364 (633)
..|++.|.-|||||||+-.
T Consensus 3 kFI~~EG~dGsGKsTq~~~ 21 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINE 21 (205)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHH
Confidence 4678899999999998643
No 451
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=68.96 E-value=1.7 Score=42.45 Aligned_cols=20 Identities=30% Similarity=0.346 Sum_probs=16.1
Q ss_pred CeEEEeccCCChhhchHHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~ 365 (633)
..+++.|..||||||+.-..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l 22 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLL 22 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHH
Confidence 46889999999999976433
No 452
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=68.94 E-value=1.7 Score=43.88 Aligned_cols=20 Identities=35% Similarity=0.498 Sum_probs=15.9
Q ss_pred CeEEEeccCCChhhchHHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~ 365 (633)
..|+|+|+.||||||+.-..
T Consensus 76 ~iI~I~G~~GSGKSTva~~L 95 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRL 95 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 36888999999999875433
No 453
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=68.91 E-value=2.7 Score=44.39 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=16.8
Q ss_pred HHHHHHcC-Ce-EEEeccCCChhhchH
Q 035699 338 LLQAVSEY-PV-LVIVGETGSGKTTQI 362 (633)
Q Consensus 338 il~al~~~-~~-vIi~a~TGSGKTt~l 362 (633)
+++.+.++ +. |+..|+||||||..+
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 44555554 43 555899999999654
No 454
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=68.85 E-value=1.8 Score=44.55 Aligned_cols=18 Identities=50% Similarity=0.704 Sum_probs=15.1
Q ss_pred eEEEeccCCChhhchHHH
Q 035699 347 VLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~ 364 (633)
..+|+|+||||||+.+=.
T Consensus 26 ~~~i~G~NGsGKS~ll~a 43 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDA 43 (322)
T ss_dssp EEEEECCTTTCSTHHHHH
T ss_pred cEEEECCCCCcHHHHHHH
Confidence 788999999999986443
No 455
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=68.84 E-value=3.1 Score=40.42 Aligned_cols=23 Identities=26% Similarity=0.228 Sum_probs=17.6
Q ss_pred cCCeEEEeccCCChhhchHHHHH
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~L 366 (633)
.+..+.|.|+.||||||..-...
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~ 37 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIA 37 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34578899999999998765433
No 456
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=68.76 E-value=2.9 Score=43.50 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=16.8
Q ss_pred HHHHHHcC-Ce-EEEeccCCChhhchH
Q 035699 338 LLQAVSEY-PV-LVIVGETGSGKTTQI 362 (633)
Q Consensus 338 il~al~~~-~~-vIi~a~TGSGKTt~l 362 (633)
+++.+.++ .. |+..|+||||||..+
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 44444444 33 555899999999665
No 457
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=68.72 E-value=2.5 Score=43.23 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=19.1
Q ss_pred HcCCeEEEeccCCChhhchHHHHH
Q 035699 343 SEYPVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~lp~~L 366 (633)
..+..+.+.|++|+||||.+=..+
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH
Confidence 346788999999999998765544
No 458
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=68.67 E-value=2.7 Score=43.78 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=17.8
Q ss_pred CCeEEE--eccCCChhhchHHHHHH
Q 035699 345 YPVLVI--VGETGSGKTTQIPQYLY 367 (633)
Q Consensus 345 ~~~vIi--~a~TGSGKTt~lp~~Ll 367 (633)
...++| +|++|+|||+.+-.++.
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~ 74 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVK 74 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHH
Confidence 457888 99999999987655543
No 459
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=68.28 E-value=2.4 Score=38.24 Aligned_cols=21 Identities=33% Similarity=0.773 Sum_probs=16.7
Q ss_pred eEEEeccCCChhhchHHHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~Ll 367 (633)
.|++.|++|+|||+.+-.++.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478899999999987765553
No 460
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=67.95 E-value=2.9 Score=41.10 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=14.5
Q ss_pred eEEEeccCCChhhchHH
Q 035699 347 VLVIVGETGSGKTTQIP 363 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp 363 (633)
+|.|.|+.||||||..-
T Consensus 24 iI~I~G~~GSGKST~a~ 40 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCA 40 (252)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68889999999998654
No 461
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=67.89 E-value=2.3 Score=39.68 Aligned_cols=20 Identities=25% Similarity=0.742 Sum_probs=16.0
Q ss_pred eEEEeccCCChhhchHHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~L 366 (633)
.+++.|++|+||||.+-.++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~ 50 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFT 50 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 47789999999998765544
No 462
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=67.75 E-value=2.5 Score=37.52 Aligned_cols=21 Identities=29% Similarity=0.616 Sum_probs=16.7
Q ss_pred eEEEeccCCChhhchHHHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~Ll 367 (633)
.|++.|++|+|||+.+-.++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378899999999987765553
No 463
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=67.75 E-value=3.2 Score=48.26 Aligned_cols=26 Identities=35% Similarity=0.645 Sum_probs=21.0
Q ss_pred HcCCeEEEeccCCChhhch---HHHHHHH
Q 035699 343 SEYPVLVIVGETGSGKTTQ---IPQYLYE 368 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~---lp~~Lle 368 (633)
..+|.|||+|+.|||||.. +.+||..
T Consensus 138 ~~nQsIiiSGESGAGKTe~tK~i~~yla~ 166 (784)
T 2v26_A 138 KLSQSIIVSGESGAGKTENTKFVLRYLTE 166 (784)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEcCCCCCCceehHHHHHHHHHh
Confidence 3578999999999999975 6667664
No 464
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=67.70 E-value=2.5 Score=37.30 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=16.6
Q ss_pred eEEEeccCCChhhchHHHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~Ll 367 (633)
.|++.|++|+|||+.+-.++.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478899999999987655543
No 465
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=67.68 E-value=2.5 Score=37.33 Aligned_cols=21 Identities=33% Similarity=0.733 Sum_probs=16.6
Q ss_pred eEEEeccCCChhhchHHHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~Ll 367 (633)
.|++.|++|+|||+.+-.++.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478899999999987665543
No 466
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=67.68 E-value=1.6 Score=48.47 Aligned_cols=23 Identities=43% Similarity=0.564 Sum_probs=19.2
Q ss_pred HHcCCeEEEeccCCChhhchHHH
Q 035699 342 VSEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 342 l~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
+..+.++.++|++||||||.+-.
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~ 66 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKI 66 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHH
Confidence 46788899999999999987543
No 467
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=67.67 E-value=4.7 Score=43.45 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=17.6
Q ss_pred CCeEEEeccCCChhhchHHHHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Ll 367 (633)
...+++.||+|||||+.+-.+..
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999976544433
No 468
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=67.65 E-value=0.85 Score=48.27 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=15.9
Q ss_pred cCCeEEEeccCCChhhchHH
Q 035699 344 EYPVLVIVGETGSGKTTQIP 363 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp 363 (633)
.+ .++|+|++||||||.+=
T Consensus 60 ~G-~~~lvG~NGaGKStLl~ 78 (415)
T 4aby_A 60 GG-FCAFTGETGAGKSIIVD 78 (415)
T ss_dssp SS-EEEEEESHHHHHHHHTH
T ss_pred CC-cEEEECCCCCCHHHHHH
Confidence 45 78999999999998753
No 469
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=67.65 E-value=4.9 Score=40.69 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=16.1
Q ss_pred CeEEEeccCCChhhchHHHHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~Ll 367 (633)
..+++.||+|+|||+.+-....
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~ 70 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCH 70 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHH
T ss_pred eEEEeeCcCCCCHHHHHHHHHH
Confidence 4567788899999976654443
No 470
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=67.54 E-value=2.5 Score=55.58 Aligned_cols=40 Identities=20% Similarity=0.264 Sum_probs=27.6
Q ss_pred HHHccCCChHHHHH---HHHHHHcCCeEEEeccCCChhhchHH
Q 035699 324 EERKTLPIYPFREE---LLQAVSEYPVLVIVGETGSGKTTQIP 363 (633)
Q Consensus 324 ~~r~~LPi~~~q~~---il~al~~~~~vIi~a~TGSGKTt~lp 363 (633)
....-.|...+-.. +...+..+..|+++||||||||+.+-
T Consensus 899 ~~~~l~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 899 QRSGFSMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHTCCCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHcCCcccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 33445566555443 44556677889999999999998643
No 471
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=67.52 E-value=2.8 Score=44.29 Aligned_cols=23 Identities=35% Similarity=0.366 Sum_probs=16.5
Q ss_pred HHHHcCCe--EEEeccCCChhhchH
Q 035699 340 QAVSEYPV--LVIVGETGSGKTTQI 362 (633)
Q Consensus 340 ~al~~~~~--vIi~a~TGSGKTt~l 362 (633)
.++.++.+ |+..|+||||||..+
T Consensus 78 ~~~~~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 78 DLYENGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HHHHHCCEEEEEEECCTTSSHHHHH
T ss_pred hhccCCceeEEEeeCCCCCCCCEEE
Confidence 44444544 678999999999654
No 472
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=67.16 E-value=2.4 Score=38.75 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=16.4
Q ss_pred eEEEeccCCChhhchHHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~L 366 (633)
.|++.|++|+|||+.+-.++
T Consensus 25 ~i~v~G~~~~GKSsli~~l~ 44 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALF 44 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58889999999998776554
No 473
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=67.04 E-value=2.8 Score=39.85 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=19.2
Q ss_pred CeEEEeccCCChhhchHHHHHHHh
Q 035699 346 PVLVIVGETGSGKTTQIPQYLYEA 369 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~Lle~ 369 (633)
..++++|.+|+||||.+-.++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 457888999999999887776553
No 474
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=67.00 E-value=2.8 Score=48.35 Aligned_cols=19 Identities=37% Similarity=0.489 Sum_probs=15.6
Q ss_pred cCCeEEEeccCCChhhchH
Q 035699 344 EYPVLVIVGETGSGKTTQI 362 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~l 362 (633)
...++++.||+|+|||+.+
T Consensus 200 ~~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp SSCEEEEESCTTTTTHHHH
T ss_pred CCCCeEEECCCCCCHHHHH
Confidence 3457999999999999754
No 475
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=66.96 E-value=2.6 Score=38.01 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=16.1
Q ss_pred eEEEeccCCChhhchHHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~L 366 (633)
.+++.|++|+|||+.+-.++
T Consensus 5 ~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47889999999998776554
No 476
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.95 E-value=3 Score=45.15 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=18.9
Q ss_pred CCeEEEeccCCChhhchHHHHHHHh
Q 035699 345 YPVLVIVGETGSGKTTQIPQYLYEA 369 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~~Lle~ 369 (633)
..-+++.||+|||||+..-....+.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHh
Confidence 4679999999999997655544444
No 477
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=66.93 E-value=7.2 Score=42.69 Aligned_cols=53 Identities=13% Similarity=0.030 Sum_probs=40.0
Q ss_pred cCCeEEEeccCCChhhchHHHHHHHhccccCCeeeecchhHHHHHHHHHHHHHHhCC
Q 035699 344 EYPVLVIVGETGSGKTTQIPQYLYEAGYTKQGKIGCTQLRRVAAMSVAARVSQEMGV 400 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~~Lle~~~~~~gkilitqPrR~aA~qva~rva~e~g~ 400 (633)
.++.+.+.|-||||||..+...+... ++.++|+.|....|.+++.-+...++.
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l~~~~----~~p~lvv~~~~~~A~~l~~~l~~~~~~ 65 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEIAERH----AGPVVLIAPDMQNALRLHDEISQFTDQ 65 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHHHHHS----SSCEEEEESSHHHHHHHHHHHHHTCSS
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHHh----CCCEEEEeCCHHHHHHHHHHHHhhCCC
Confidence 35567889999999997776655432 336889999999999988877666553
No 478
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=66.91 E-value=2.5 Score=37.61 Aligned_cols=20 Identities=20% Similarity=0.730 Sum_probs=16.1
Q ss_pred eEEEeccCCChhhchHHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~L 366 (633)
.|++.|++|+|||+.+-.++
T Consensus 5 ~i~v~G~~~~GKssli~~l~ 24 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFV 24 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 37889999999998766555
No 479
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=66.89 E-value=11 Score=43.65 Aligned_cols=59 Identities=10% Similarity=0.168 Sum_probs=41.2
Q ss_pred CCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCC
Q 035699 518 IGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATN 585 (633)
Q Consensus 518 ~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATd 585 (633)
.+.+||.+|+..-+...+..+...+.. .++.+..+||+.+...+...+. +...|||||+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~-----~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp 354 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFER-----QGYSVQGISGENFSNVSVEKVI----EDSDIIVVTP 354 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGG-----GTCCEEEECCC-----CHHHHH----HTCSEEEECH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhccc-----CCceEEEEeCCcchhhhHHHhh----CCCCEEEEch
Confidence 688999999999999999988887532 2678999999987665433332 1256999994
No 480
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=66.88 E-value=2.5 Score=38.94 Aligned_cols=21 Identities=24% Similarity=0.567 Sum_probs=16.8
Q ss_pred CeEEEeccCCChhhchHHHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~L 366 (633)
-.|++.|++|+|||+.+-.++
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~ 44 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLI 44 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 458899999999998765554
No 481
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=66.87 E-value=2.3 Score=47.30 Aligned_cols=20 Identities=35% Similarity=0.624 Sum_probs=16.8
Q ss_pred cCCeEEEeccCCChhhchHH
Q 035699 344 EYPVLVIVGETGSGKTTQIP 363 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp 363 (633)
.+..+++.||+||||||.+-
T Consensus 107 ~g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46789999999999997644
No 482
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=66.84 E-value=2.6 Score=39.79 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=17.6
Q ss_pred CeEEEeccCCChhhchHHHHHH
Q 035699 346 PVLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 346 ~~vIi~a~TGSGKTt~lp~~Ll 367 (633)
-.|++.|++|+|||+.+-.++.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~ 34 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTT 34 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3588999999999987766554
No 483
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=66.83 E-value=2 Score=43.73 Aligned_cols=20 Identities=25% Similarity=0.591 Sum_probs=13.0
Q ss_pred CCeEEEeccCCChhhchHHH
Q 035699 345 YPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 345 ~~~vIi~a~TGSGKTt~lp~ 364 (633)
+.+|.|.|+.||||||..-.
T Consensus 5 ~~iIgItG~sGSGKSTva~~ 24 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHT 24 (290)
T ss_dssp SCEEEEESCC---CCTHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 45788899999999986543
No 484
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=66.82 E-value=2.7 Score=37.41 Aligned_cols=20 Identities=20% Similarity=0.577 Sum_probs=16.0
Q ss_pred eEEEeccCCChhhchHHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQYL 366 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~L 366 (633)
.|++.|++|+|||+.+-.++
T Consensus 5 ~i~v~G~~~~GKssli~~l~ 24 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFV 24 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37889999999998765554
No 485
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=66.67 E-value=2.4 Score=44.37 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=20.9
Q ss_pred HHHHHHc--CCeEEEeccCCChhhchHHHH
Q 035699 338 LLQAVSE--YPVLVIVGETGSGKTTQIPQY 365 (633)
Q Consensus 338 il~al~~--~~~vIi~a~TGSGKTt~lp~~ 365 (633)
+...+.. +..+.|+|++||||||.+-..
T Consensus 161 v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L 190 (365)
T 1lw7_A 161 IPKEARPFFAKTVAILGGESSGKSVLVNKL 190 (365)
T ss_dssp SCTTTGGGTCEEEEEECCTTSHHHHHHHHH
T ss_pred CCHHHHHhhhCeEEEECCCCCCHHHHHHHH
Confidence 3345556 677899999999999876543
No 486
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=66.66 E-value=3.3 Score=43.75 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=16.6
Q ss_pred HHHHHHcC-Ce-EEEeccCCChhhchH
Q 035699 338 LLQAVSEY-PV-LVIVGETGSGKTTQI 362 (633)
Q Consensus 338 il~al~~~-~~-vIi~a~TGSGKTt~l 362 (633)
+++.+.+| .. |+..|+||||||..+
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEE
Confidence 34444444 43 455899999999665
No 487
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=66.63 E-value=2.7 Score=37.37 Aligned_cols=21 Identities=24% Similarity=0.575 Sum_probs=16.5
Q ss_pred eEEEeccCCChhhchHHHHHH
Q 035699 347 VLVIVGETGSGKTTQIPQYLY 367 (633)
Q Consensus 347 ~vIi~a~TGSGKTt~lp~~Ll 367 (633)
.|++.|++|+|||+.+-.++.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~ 28 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVE 28 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 378899999999987665543
No 488
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=66.57 E-value=3.4 Score=43.46 Aligned_cols=25 Identities=40% Similarity=0.533 Sum_probs=16.3
Q ss_pred HHHHHHcC-Ce-EEEeccCCChhhchH
Q 035699 338 LLQAVSEY-PV-LVIVGETGSGKTTQI 362 (633)
Q Consensus 338 il~al~~~-~~-vIi~a~TGSGKTt~l 362 (633)
+++.+.++ .. |+..|+||||||..+
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 34444444 43 455899999999654
No 489
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=66.36 E-value=3.9 Score=47.54 Aligned_cols=27 Identities=37% Similarity=0.617 Sum_probs=21.7
Q ss_pred HcCCeEEEeccCCChhhch---HHHHHHHh
Q 035699 343 SEYPVLVIVGETGSGKTTQ---IPQYLYEA 369 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~---lp~~Lle~ 369 (633)
..+|.|||+|+.|+|||.. +.+||...
T Consensus 169 ~~nQsIiiSGESGAGKTe~tK~im~yla~v 198 (783)
T 4db1_A 169 RENQSILITGESGAGKTVNTKRVIQYFAVI 198 (783)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred CCCceEEEeCCCCCCCchHHHHHHHhhhhh
Confidence 3578899999999999975 66777653
No 490
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=66.22 E-value=2.4 Score=45.42 Aligned_cols=21 Identities=33% Similarity=0.532 Sum_probs=17.2
Q ss_pred cCCeEEEeccCCChhhchHHH
Q 035699 344 EYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 344 ~~~~vIi~a~TGSGKTt~lp~ 364 (633)
.+.+++|+||+|||||+.+-.
T Consensus 25 ~~~~~~i~G~nG~GKstll~a 45 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSNMMDA 45 (430)
T ss_dssp TCSEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 367889999999999986543
No 491
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=66.19 E-value=3.2 Score=43.52 Aligned_cols=22 Identities=23% Similarity=0.525 Sum_probs=15.4
Q ss_pred HHHcCCe-EEEeccCCChhhchH
Q 035699 341 AVSEYPV-LVIVGETGSGKTTQI 362 (633)
Q Consensus 341 al~~~~~-vIi~a~TGSGKTt~l 362 (633)
++.++.. |+..|+||||||..+
T Consensus 90 ~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 90 LLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhCCCceEEEEecCCCCCCCeEE
Confidence 3444444 455899999999665
No 492
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=66.11 E-value=3.5 Score=43.51 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=17.0
Q ss_pred HHHHHHcCCe--EEEeccCCChhhchH
Q 035699 338 LLQAVSEYPV--LVIVGETGSGKTTQI 362 (633)
Q Consensus 338 il~al~~~~~--vIi~a~TGSGKTt~l 362 (633)
+++.+.++-+ |+..|+||||||..+
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 4555555533 455899999999654
No 493
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=66.06 E-value=25 Score=36.10 Aligned_cols=76 Identities=11% Similarity=0.108 Sum_probs=52.4
Q ss_pred CCCCEEEEcCcHHHHHHHHHHHHHhhcccCCCCCceEEEeccCCCCHHHHHHHhCCCCCCCeeEEEeCC-----cccc-C
Q 035699 517 PIGDILVFLTGQDQFETAEEILKQRTRGLGTKIAELIICPIYGNLPTELQAKIFEPTPEGARKVVLATN-----IAET-S 590 (633)
Q Consensus 517 ~~g~iLVFl~t~~eie~l~~~L~~~~~~l~~~~~~~~v~~lHg~l~~~~R~~i~~~f~~g~rkVLvATd-----IAer-G 590 (633)
..+.+||.+|++.-+..+++.+...... .+..+..++|+.....+...+. .+...|+|+|+ .+.+ .
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~---~~~~~iiv~T~~~l~~~l~~~~ 178 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDY-----MGASCHACIGGTNVRAEVQKLQ---MEAPHIIVGTPGRVFDMLNRRY 178 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGG-----SCCCEEECCCCTTHHHHHHHHT---TTCCSEEEECHHHHHHHHHHTS
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcc-----cCceEEEEECCcchHHHHHHHh---cCCCCEEEECHHHHHHHHHcCC
Confidence 4578999999999999999999886432 3567788888877666554443 24468999994 2232 3
Q ss_pred CCCCCccEEE
Q 035699 591 LTIDGIKYVI 600 (633)
Q Consensus 591 LdIp~V~~VI 600 (633)
+....+.+||
T Consensus 179 ~~~~~~~~vV 188 (414)
T 3eiq_A 179 LSPKYIKMFV 188 (414)
T ss_dssp SCSTTCCEEE
T ss_pred cccccCcEEE
Confidence 4556666544
No 494
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=66.00 E-value=3.5 Score=42.92 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=16.5
Q ss_pred HHHHHHcC-Ce-EEEeccCCChhhchH
Q 035699 338 LLQAVSEY-PV-LVIVGETGSGKTTQI 362 (633)
Q Consensus 338 il~al~~~-~~-vIi~a~TGSGKTt~l 362 (633)
++..+.++ .. |+..|+||||||..+
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 34444444 43 455899999999654
No 495
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=65.96 E-value=3.5 Score=44.31 Aligned_cols=25 Identities=40% Similarity=0.488 Sum_probs=17.2
Q ss_pred HHHHHHcCCe--EEEeccCCChhhchH
Q 035699 338 LLQAVSEYPV--LVIVGETGSGKTTQI 362 (633)
Q Consensus 338 il~al~~~~~--vIi~a~TGSGKTt~l 362 (633)
+++.+.+|-+ |+..|+||||||..+
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 4555555433 555899999999665
No 496
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=65.89 E-value=3.8 Score=47.77 Aligned_cols=27 Identities=26% Similarity=0.541 Sum_probs=21.6
Q ss_pred HcCCeEEEeccCCChhhch---HHHHHHHh
Q 035699 343 SEYPVLVIVGETGSGKTTQ---IPQYLYEA 369 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~---lp~~Lle~ 369 (633)
..+|.|||+|+.|+|||.. +.+||...
T Consensus 154 ~~nQsIiisGESGAGKTe~tK~i~~yla~~ 183 (795)
T 1w7j_A 154 ERNQSIIVSGESGAGKTVSAKYAMRYFATV 183 (795)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCCcchHHHHHHHHHHhh
Confidence 3578999999999999975 66676644
No 497
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=65.76 E-value=3.5 Score=43.54 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=16.4
Q ss_pred HHHHHHcC-Ce-EEEeccCCChhhchH
Q 035699 338 LLQAVSEY-PV-LVIVGETGSGKTTQI 362 (633)
Q Consensus 338 il~al~~~-~~-vIi~a~TGSGKTt~l 362 (633)
+++.+.++ .. |+..|+||||||..+
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 34444444 43 455899999999554
No 498
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=65.75 E-value=3.3 Score=43.57 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=16.7
Q ss_pred HHHHHHcC-Ce-EEEeccCCChhhchH
Q 035699 338 LLQAVSEY-PV-LVIVGETGSGKTTQI 362 (633)
Q Consensus 338 il~al~~~-~~-vIi~a~TGSGKTt~l 362 (633)
+++.+.++ .. |+..|+||||||..+
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 72 TVDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCcceEEEECCCCCCcceEe
Confidence 34444444 33 555899999999655
No 499
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=65.67 E-value=3.9 Score=43.09 Aligned_cols=22 Identities=18% Similarity=0.401 Sum_probs=18.3
Q ss_pred HcCCeEEEeccCCChhhchHHH
Q 035699 343 SEYPVLVIVGETGSGKTTQIPQ 364 (633)
Q Consensus 343 ~~~~~vIi~a~TGSGKTt~lp~ 364 (633)
..+..+.+.|++|+||||.+-.
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~ 234 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNA 234 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHH
T ss_pred cCCCEEEEECCCCccHHHHHHH
Confidence 4678899999999999987643
No 500
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=65.61 E-value=3.4 Score=43.39 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=16.5
Q ss_pred HHHHHHcC-Ce-EEEeccCCChhhchH
Q 035699 338 LLQAVSEY-PV-LVIVGETGSGKTTQI 362 (633)
Q Consensus 338 il~al~~~-~~-vIi~a~TGSGKTt~l 362 (633)
+++.+.++ .. |+..|+||||||..+
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 34444444 33 555899999999654
Done!