Query 035700
Match_columns 179
No_of_seqs 191 out of 546
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 05:30:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035700.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035700hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02309 AUX_IAA: AUX/IAA fami 100.0 3.9E-51 8.4E-56 341.0 0.3 118 58-178 82-205 (215)
2 PF00564 PB1: PB1 domain; Int 97.7 0.00019 4.2E-09 50.5 6.6 68 90-172 3-71 (84)
3 cd06398 PB1_Joka2 The PB1 doma 97.3 0.0013 2.8E-08 49.2 7.3 67 90-171 2-71 (91)
4 smart00666 PB1 PB1 domain. Pho 97.3 0.002 4.4E-08 45.3 7.9 66 91-172 4-70 (81)
5 cd05992 PB1 The PB1 domain is 97.3 0.0019 4.2E-08 45.1 7.5 65 91-171 3-69 (81)
6 cd06407 PB1_NLP A PB1 domain i 97.2 0.0021 4.6E-08 47.0 7.3 53 91-158 3-55 (82)
7 cd06396 PB1_NBR1 The PB1 domai 96.9 0.0049 1.1E-07 45.5 6.8 53 91-159 3-55 (81)
8 cd06401 PB1_TFG The PB1 domain 96.7 0.0095 2.1E-07 44.1 7.5 72 91-175 3-78 (81)
9 cd06409 PB1_MUG70 The MUG70 pr 96.5 0.0065 1.4E-07 45.2 5.2 51 98-159 7-59 (86)
10 cd06403 PB1_Par6 The PB1 domai 96.2 0.017 3.8E-07 42.7 5.9 68 91-172 3-71 (80)
11 cd06402 PB1_p62 The PB1 domain 96.0 0.041 9E-07 41.0 7.4 58 90-160 2-64 (87)
12 cd06404 PB1_aPKC PB1 domain is 95.6 0.045 9.7E-07 40.8 6.1 54 91-159 3-56 (83)
13 cd06397 PB1_UP1 Uncharacterize 95.5 0.063 1.4E-06 39.9 6.4 66 91-172 3-69 (82)
14 cd06408 PB1_NoxR The PB1 domai 93.5 0.32 7E-06 36.3 6.4 55 89-161 3-57 (86)
15 cd06399 PB1_P40 The PB1 domain 82.0 3 6.5E-05 31.6 4.5 40 104-159 22-61 (92)
16 PF10411 DsbC_N: Disulfide bon 58.4 9.7 0.00021 25.6 2.4 17 145-161 34-50 (57)
17 cd06395 PB1_Map2k5 PB1 domain 58.1 21 0.00045 26.9 4.2 49 96-159 9-57 (91)
18 PF06463 Mob_synth_C: Molybden 46.4 46 0.001 25.8 4.8 65 104-176 17-81 (128)
19 PRK13361 molybdenum cofactor b 45.4 66 0.0014 28.3 6.1 76 93-176 187-264 (329)
20 cd06406 PB1_P67 A PB1 domain i 42.7 1E+02 0.0023 22.7 5.8 65 90-171 4-69 (80)
21 COG0219 CspR Predicted rRNA me 38.8 14 0.00031 30.4 0.9 55 96-162 48-105 (155)
22 PF00788 RA: Ras association ( 35.9 1.4E+02 0.0031 20.4 6.5 70 88-169 2-77 (93)
23 PF14688 DUF4461: Domain of un 30.7 32 0.00069 30.9 1.8 23 149-171 92-117 (313)
24 KOG3579 Predicted E3 ubiquitin 28.9 23 0.00049 32.4 0.5 58 110-171 18-80 (352)
25 KOG3957 Predicted L-carnitine 28.8 98 0.0021 29.0 4.6 73 100-175 177-249 (387)
26 PF02013 CBM_10: Cellulose or 28.3 18 0.0004 22.9 -0.1 12 145-156 16-27 (36)
27 PF03625 DUF302: Domain of unk 28.1 33 0.00072 23.0 1.1 18 142-159 45-62 (65)
28 PF09840 DUF2067: Uncharacteri 26.3 41 0.00089 28.3 1.6 28 142-173 98-125 (190)
29 PF07929 PRiA4_ORF3: Plasmid p 23.8 1E+02 0.0022 24.6 3.5 37 89-125 5-43 (179)
30 PF12108 SF3a60_bindingd: Spli 23.5 14 0.00031 22.2 -1.2 17 158-174 4-20 (28)
31 PF13665 DUF4150: Domain of un 23.3 47 0.001 25.5 1.3 25 88-112 81-105 (110)
32 COG3816 Uncharacterized protei 22.5 57 0.0012 27.7 1.7 18 94-125 56-73 (205)
33 PLN02622 iron superoxide dismu 22.3 1.7E+02 0.0037 25.8 4.8 40 114-153 143-183 (261)
34 PRK11430 putative CoA-transfer 22.2 91 0.002 28.4 3.2 25 147-172 241-268 (381)
35 COG3286 Uncharacterized protei 22.0 39 0.00085 29.1 0.7 29 141-173 100-128 (204)
36 PF09676 TraV: Type IV conjuga 21.8 63 0.0014 24.2 1.7 19 143-161 92-110 (119)
No 1
>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []. The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.
Probab=100.00 E-value=3.9e-51 Score=340.95 Aligned_cols=118 Identities=45% Similarity=0.826 Sum_probs=5.9
Q ss_pred CCCcccCCCCCchhhhhhhhhhhhhcCCCccceEEEEecCcccceeeecCCCCCHHHHHHHHHHhhcccccc---cc-c-
Q 035700 58 DDDQASDWPPTKPLIMRRALEEEENEGSSATFFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIW---SE-M- 132 (179)
Q Consensus 58 ~~~QvvgWPPvrs~~~r~~l~~~~~~~~~~~~~VKV~MdG~~igRkVDL~~~~sY~eL~~~Le~MF~~~~~~---~e-~- 132 (179)
.++|+||||||++| +++.+.... ....+.||||+|||+||||||||++|+||++|+.+|++||.++... +. .
T Consensus 82 ~~~~~vgwpp~~s~-r~n~~~~~~--~~~~~~~vKV~mdG~~igRkVDL~~~~sY~~L~~~L~~MF~~~~i~~~~~~~~~ 158 (215)
T PF02309_consen 82 SKAQVVGWPPVRSF-RKNSLSEKQ--SSSSRSYVKVNMDGVPIGRKVDLSAYSSYEELSSALEKMFSCFSIEQCGSHGLN 158 (215)
T ss_dssp ----BTTBS----S------------------------------------------------------------------
T ss_pred ccccccCCCccccc-ccccccccc--cccCCceeEEEecCcccceecCHHHhhCHHHHHHHHHHhcCCCCcccccccccc
Confidence 46899999999999 666655222 2335899999999999999999999999999999999999543211 00 0
Q ss_pred -CCCCCCCCCCceEEEEEeCCCCeEEecCcChhHHhhccceeEEeec
Q 035700 133 -DGSVSAYSETCHVLTYEDKEGDWMMVGDVPWEMFLSTVRRLKITRA 178 (179)
Q Consensus 133 -~g~~~~~~~~~~vl~YeD~eGD~mLVGDvPW~~Fv~svKRLrI~~~ 178 (179)
.+.....++++|+|||||+||||||||||||+|||++|||||||+.
T Consensus 159 ~~~~~~~~~~~~~~l~Y~D~egd~mlvGD~PW~~F~~~vkRl~I~~~ 205 (215)
T PF02309_consen 159 ESGLLDLLNGSEYVLVYEDKEGDWMLVGDVPWEEFVKSVKRLRIMKS 205 (215)
T ss_dssp -----------------------------------------------
T ss_pred chhhccccCCcceeEEEECCCCCEEEecCCCHHHHHHHhhccEEecH
Confidence 0112234567999999999999999999999999999999999974
No 2
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=97.66 E-value=0.00019 Score=50.50 Aligned_cols=68 Identities=24% Similarity=0.341 Sum_probs=55.3
Q ss_pred eEEEEecCcccceeeecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEec-CcChhHHhh
Q 035700 90 FVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVG-DVPWEMFLS 168 (179)
Q Consensus 90 ~VKV~MdG~~igRkVDL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVG-DvPW~~Fv~ 168 (179)
-||+...|. +=|.+.+..--+|++|...+++.|+.. ...+.+.|.|.||||..+- |.=|++.++
T Consensus 3 ~vK~~~~~~-~~~~~~~~~~~s~~~L~~~i~~~~~~~--------------~~~~~l~Y~D~dgD~V~i~sd~Dl~~a~~ 67 (84)
T PF00564_consen 3 RVKVRYGGD-IRRIISLPSDVSFDDLRSKIREKFGLL--------------DEDFQLKYKDEDGDLVTISSDEDLQEAIE 67 (84)
T ss_dssp EEEEEETTE-EEEEEEECSTSHHHHHHHHHHHHHTTS--------------TSSEEEEEEETTSSEEEESSHHHHHHHHH
T ss_pred EEEEEECCe-eEEEEEcCCCCCHHHHHHHHHHHhCCC--------------CccEEEEeeCCCCCEEEeCCHHHHHHHHH
Confidence 489999994 444688888889999999999999962 1458999999999999887 446888888
Q ss_pred ccce
Q 035700 169 TVRR 172 (179)
Q Consensus 169 svKR 172 (179)
.+++
T Consensus 68 ~~~~ 71 (84)
T PF00564_consen 68 QAKE 71 (84)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8753
No 3
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=97.29 E-value=0.0013 Score=49.16 Aligned_cols=67 Identities=21% Similarity=0.261 Sum_probs=49.2
Q ss_pred eEEEEecCcccceeeecC---CCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEecCcChhHH
Q 035700 90 FVKVYMEGIPIGRKLDLL---AHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVGDVPWEMF 166 (179)
Q Consensus 90 ~VKV~MdG~~igRkVDL~---~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVGDvPW~~F 166 (179)
-|||.-+|.-+=-++++. .--+|++|...+++.|.+. ...++++.|.|.||||..+-.. ++|
T Consensus 2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~-------------~~~~~~l~Y~Dedgd~V~l~~D--~DL 66 (91)
T cd06398 2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLS-------------PDADLSLTYTDEDGDVVTLVDD--NDL 66 (91)
T ss_pred EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCC-------------CCCcEEEEEECCCCCEEEEccH--HHH
Confidence 389999997444455543 4579999999999999863 1246899999999999988554 344
Q ss_pred hhccc
Q 035700 167 LSTVR 171 (179)
Q Consensus 167 v~svK 171 (179)
..++.
T Consensus 67 ~~a~~ 71 (91)
T cd06398 67 TDAIQ 71 (91)
T ss_pred HHHHH
Confidence 44443
No 4
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=97.28 E-value=0.002 Score=45.26 Aligned_cols=66 Identities=23% Similarity=0.357 Sum_probs=52.3
Q ss_pred EEEEecCcccceeeecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEec-CcChhHHhhc
Q 035700 91 VKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVG-DVPWEMFLST 169 (179)
Q Consensus 91 VKV~MdG~~igRkVDL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVG-DvPW~~Fv~s 169 (179)
|||.-.| --|.+-+..--+|++|..++.+.|+.. ...+.|.|+|.||||..+. |.=|++.++.
T Consensus 4 vK~~~~~--~~~~~~~~~~~s~~dL~~~i~~~~~~~--------------~~~~~l~Y~Dedgd~v~l~sd~Dl~~a~~~ 67 (81)
T smart00666 4 VKLRYGG--ETRRLSVPRDISFEDLRSKVAKRFGLD--------------NQSFTLKYQDEDGDLVSLTSDEDLEEAIEE 67 (81)
T ss_pred EEEEECC--EEEEEEECCCCCHHHHHHHHHHHhCCC--------------CCCeEEEEECCCCCEEEecCHHHHHHHHHH
Confidence 7887755 467788888899999999999999852 0358999999999998665 4578877777
Q ss_pred cce
Q 035700 170 VRR 172 (179)
Q Consensus 170 vKR 172 (179)
+++
T Consensus 68 ~~~ 70 (81)
T smart00666 68 YDS 70 (81)
T ss_pred HHH
Confidence 663
No 5
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=97.26 E-value=0.0019 Score=45.05 Aligned_cols=65 Identities=23% Similarity=0.347 Sum_probs=51.2
Q ss_pred EEEEecCcccceeeecC-CCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEecC-cChhHHhh
Q 035700 91 VKVYMEGIPIGRKLDLL-AHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVGD-VPWEMFLS 168 (179)
Q Consensus 91 VKV~MdG~~igRkVDL~-~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVGD-vPW~~Fv~ 168 (179)
|||.-.|. =|.+=+. .--+|++|...|.+.|+... ..+.+.|+|.||||..+.+ .=|++-++
T Consensus 3 vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~~~~~~--------------~~~~l~y~D~e~d~v~l~sd~Dl~~a~~ 66 (81)
T cd05992 3 VKVKYGGE--IRRFVVVSRSISFEDLRSKIAEKFGLDA--------------VSFKLKYPDEDGDLVTISSDEDLEEAIE 66 (81)
T ss_pred EEEEecCC--CEEEEEecCCCCHHHHHHHHHHHhCCCC--------------CcEEEEeeCCCCCEEEeCCHHHHHHHHH
Confidence 78888874 3444444 88899999999999999621 3478999999999998887 67777777
Q ss_pred ccc
Q 035700 169 TVR 171 (179)
Q Consensus 169 svK 171 (179)
.++
T Consensus 67 ~~~ 69 (81)
T cd05992 67 EAR 69 (81)
T ss_pred HHh
Confidence 765
No 6
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=97.18 E-value=0.0021 Score=47.03 Aligned_cols=53 Identities=19% Similarity=0.371 Sum_probs=42.7
Q ss_pred EEEEecCcccceeeecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEe
Q 035700 91 VKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMV 158 (179)
Q Consensus 91 VKV~MdG~~igRkVDL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLV 158 (179)
|||...|. -+.+-|..--+|++|..++.++|... ....|.|-|.|.||||..+
T Consensus 3 vK~~~~~d--~~r~~l~~~~~~~~L~~~i~~r~~~~-------------~~~~f~LkY~Ddegd~v~l 55 (82)
T cd06407 3 VKATYGEE--KIRFRLPPSWGFTELKQEIAKRFKLD-------------DMSAFDLKYLDDDEEWVLL 55 (82)
T ss_pred EEEEeCCe--EEEEEcCCCCCHHHHHHHHHHHhCCC-------------CCCeeEEEEECCCCCeEEe
Confidence 89999885 45556666669999999999999952 1146999999999999876
No 7
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=96.86 E-value=0.0049 Score=45.53 Aligned_cols=53 Identities=17% Similarity=0.169 Sum_probs=45.7
Q ss_pred EEEEecCcccceeeecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEec
Q 035700 91 VKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVG 159 (179)
Q Consensus 91 VKV~MdG~~igRkVDL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVG 159 (179)
|||.-.|.-+--+++-+..-+|++|..++.++|++. .+.|.|-|.||||.++-
T Consensus 3 vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~----------------~f~lKYlDde~e~v~ls 55 (81)
T cd06396 3 LKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN----------------DIQIKYVDEENEEVSVN 55 (81)
T ss_pred EEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC----------------cceeEEEcCCCCEEEEE
Confidence 799999987777788777889999999999999962 37899999999998763
No 8
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=96.74 E-value=0.0095 Score=44.11 Aligned_cols=72 Identities=19% Similarity=0.402 Sum_probs=48.7
Q ss_pred EEEEecCcccceeeecCCC-CCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEecCc---ChhHH
Q 035700 91 VKVYMEGIPIGRKLDLLAH-DGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVGDV---PWEMF 166 (179)
Q Consensus 91 VKV~MdG~~igRkVDL~~~-~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVGDv---PW~~F 166 (179)
+|+.-+| +| |++=+..- -+|.+|...+.+.|.... .....+.+.|.|.|||+.-+-+. -|..=
T Consensus 3 iK~~~g~-Di-R~~~~~~~~~t~~~L~~~v~~~F~~~~-----------~~~~~flIKYkD~dGDlVTIts~~dL~~A~~ 69 (81)
T cd06401 3 LKAQLGD-DI-RRIPIHNEDITYDELLLMMQRVFRGKL-----------GSSDDVLIKYKDEDGDLITIFDSSDLSFAIQ 69 (81)
T ss_pred EEEEeCC-eE-EEEeccCccccHHHHHHHHHHHhcccc-----------CCcccEEEEEECCCCCEEEeccHHHHHHHHh
Confidence 6776655 55 44444432 399999999999998521 12346899999999999999875 34433
Q ss_pred hhccceeEE
Q 035700 167 LSTVRRLKI 175 (179)
Q Consensus 167 v~svKRLrI 175 (179)
+...+||+|
T Consensus 70 ~~~~~~l~~ 78 (81)
T cd06401 70 CSRILKLTL 78 (81)
T ss_pred cCcceEEEE
Confidence 334445544
No 9
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=96.48 E-value=0.0065 Score=45.24 Aligned_cols=51 Identities=20% Similarity=0.324 Sum_probs=39.1
Q ss_pred cccceeeecC--CCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEec
Q 035700 98 IPIGRKLDLL--AHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVG 159 (179)
Q Consensus 98 ~~igRkVDL~--~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVG 159 (179)
.|-||.+=+. ...|+.+|..++.+-|+.... ....|.|.|.|.||||.++-
T Consensus 7 ~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~-----------~~~~~~L~YlDDEgD~VllT 59 (86)
T cd06409 7 DPKGRVHRFRLRPSESLEELRTLISQRLGDDDF-----------ETHLYALSYVDDEGDIVLIT 59 (86)
T ss_pred CCCCCEEEEEecCCCCHHHHHHHHHHHhCCccc-----------cCCcccEEEEcCCCCEEEEe
Confidence 4677765554 478999999999999996421 12458999999999998763
No 10
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=96.17 E-value=0.017 Score=42.67 Aligned_cols=68 Identities=19% Similarity=0.235 Sum_probs=50.4
Q ss_pred EEEEecCcccceeeecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEec-CcChhHHhhc
Q 035700 91 VKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVG-DVPWEMFLST 169 (179)
Q Consensus 91 VKV~MdG~~igRkVDL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVG-DvPW~~Fv~s 169 (179)
||..-|.+=-=-.+|.....+|++++.-|+.||.+. ...++|-|.|.+||.+-+- |+-+..=+++
T Consensus 3 VKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l~--------------~~~f~i~Y~D~~gDLLPInNDdNf~kAlss 68 (80)
T cd06403 3 VKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHIP--------------NVDFLIGYTDPHGDLLPINNDDNFLKALSS 68 (80)
T ss_pred eecccCCeEEEEEeccccCcCHHHHHHHHHHHhCCC--------------CCcEEEEEeCCCCCEecccCcHHHHHHHHc
Confidence 666666643333566667799999999999999863 1458999999999999764 5566666666
Q ss_pred cce
Q 035700 170 VRR 172 (179)
Q Consensus 170 vKR 172 (179)
++.
T Consensus 69 a~p 71 (80)
T cd06403 69 ANP 71 (80)
T ss_pred CCC
Confidence 664
No 11
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=96.01 E-value=0.041 Score=41.05 Aligned_cols=58 Identities=24% Similarity=0.354 Sum_probs=42.7
Q ss_pred eEEEEecC---cccceee--ecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEecC
Q 035700 90 FVKVYMEG---IPIGRKL--DLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVGD 160 (179)
Q Consensus 90 ~VKV~MdG---~~igRkV--DL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVGD 160 (179)
.||.+..| .+==|++ |=....+|++|...+.++|... .+..+.+.|.|.|||..-+..
T Consensus 2 ~vkayl~~~~~~~EIRRf~l~~~~~~s~~~L~~~V~~~f~~l-------------~~~~ftlky~DeeGDlvtIss 64 (87)
T cd06402 2 TVKAYLLGKDANAEIRRFAIDEDVSTSYEYLVEKVAAVFPSL-------------RGKNFQLFWKDEEGDLVAFSS 64 (87)
T ss_pred eEEEeecCCCCccceEEEEecCCCCcCHHHHHHHHHHHcccc-------------CCCcEEEEEECCCCCEEeecC
Confidence 57888877 2233444 4466679999999999999641 114699999999999987654
No 12
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=95.62 E-value=0.045 Score=40.76 Aligned_cols=54 Identities=20% Similarity=0.223 Sum_probs=42.3
Q ss_pred EEEEecCcccceeeecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEec
Q 035700 91 VKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVG 159 (179)
Q Consensus 91 VKV~MdG~~igRkVDL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVG 159 (179)
+|+.-.|.-.--.+|. .-+|++|.+++.+||... .+..+++.|.|.|||.--+.
T Consensus 3 ~K~~y~gdi~it~~d~--~~s~e~L~~~v~~~c~~~-------------~~q~ft~kw~DEEGDp~tiS 56 (83)
T cd06404 3 VKAAYNGDIMITSIDP--SISLEELCNEVRDMCRFH-------------NDQPFTLKWIDEEGDPCTIS 56 (83)
T ss_pred EEEEecCcEEEEEcCC--CcCHHHHHHHHHHHhCCC-------------CCCcEEEEEECCCCCceeec
Confidence 7899999655555555 678999999999999852 12458999999999986554
No 13
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=95.47 E-value=0.063 Score=39.91 Aligned_cols=66 Identities=17% Similarity=0.212 Sum_probs=50.8
Q ss_pred EEEEecCcccceeeecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEe-cCcChhHHhhc
Q 035700 91 VKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMV-GDVPWEMFLST 169 (179)
Q Consensus 91 VKV~MdG~~igRkVDL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLV-GDvPW~~Fv~s 169 (179)
-||.-+| -.|++--..-=+|.+|...|+.+|.++. -.+.|+|.|.|||..-+ -|.--++|.+-
T Consensus 3 fKv~~~g--~~RRf~~~~~pt~~~L~~kl~~Lf~lp~--------------~~~~vtYiDeD~D~ITlssd~eL~d~~~~ 66 (82)
T cd06397 3 FKSSFLG--DTRRIVFPDIPTWEALASKLENLYNLPE--------------IKVGVTYIDNDNDEITLSSNKELQDFYRL 66 (82)
T ss_pred EEEEeCC--ceEEEecCCCccHHHHHHHHHHHhCCCh--------------hHeEEEEEcCCCCEEEecchHHHHHHHHh
Confidence 4888888 5788888888999999999999999741 12789999999998754 44556666554
Q ss_pred cce
Q 035700 170 VRR 172 (179)
Q Consensus 170 vKR 172 (179)
..|
T Consensus 67 ~~~ 69 (82)
T cd06397 67 SHR 69 (82)
T ss_pred ccc
Confidence 443
No 14
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=93.53 E-value=0.32 Score=36.30 Aligned_cols=55 Identities=22% Similarity=0.298 Sum_probs=44.9
Q ss_pred ceEEEEecCcccceeeecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEecCc
Q 035700 89 FFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVGDV 161 (179)
Q Consensus 89 ~~VKV~MdG~~igRkVDL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVGDv 161 (179)
.-|||+-.|. .|-|-+..-=+|++|...+.++|++. ..+.+-|.|. ||..-+++.
T Consensus 3 ikVKv~~~~D--v~~i~v~~~i~f~dL~~kIrdkf~~~---------------~~~~iKykDE-GD~iti~sq 57 (86)
T cd06408 3 IRVKVHAQDD--TRYIMIGPDTGFADFEDKIRDKFGFK---------------RRLKIKMKDD-GDMITMGDQ 57 (86)
T ss_pred EEEEEEecCc--EEEEEcCCCCCHHHHHHHHHHHhCCC---------------CceEEEEEcC-CCCccccCH
Confidence 3489998886 66777777778999999999999962 2479999999 999887764
No 15
>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes , such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domain of p40 represents a type I PB1 domain which interacts with the PB1 domain of oxidase activator p67 w
Probab=82.03 E-value=3 Score=31.63 Aligned_cols=40 Identities=28% Similarity=0.312 Sum_probs=33.0
Q ss_pred eecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEec
Q 035700 104 LDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVG 159 (179)
Q Consensus 104 VDL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVG 159 (179)
=||+..-.|.+|..-..+-|... +-+|-|+|.|||..-+=
T Consensus 22 e~l~~~P~~kdLl~lmr~~f~~~----------------dIaLNYrD~EGDLIRll 61 (92)
T cd06399 22 EDLSSTPLLKDLLELTRREFQRE----------------DIALNYRDAEGDLIRLL 61 (92)
T ss_pred cccccCccHHHHHHHHHHHhchh----------------heeeeeecCCCCEEEEc
Confidence 37888899999999999999852 24799999999987553
No 16
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=58.44 E-value=9.7 Score=25.63 Aligned_cols=17 Identities=24% Similarity=0.710 Sum_probs=14.4
Q ss_pred EEEEEeCCCCeEEecCc
Q 035700 145 VLTYEDKEGDWMMVGDV 161 (179)
Q Consensus 145 vl~YeD~eGD~mLVGDv 161 (179)
-+.|.|.||+.+++|+.
T Consensus 34 ~i~Y~~~dg~yli~G~l 50 (57)
T PF10411_consen 34 GILYVDEDGRYLIQGQL 50 (57)
T ss_dssp EEEEEETTSSEEEES-E
T ss_pred eEEEEcCCCCEEEEeEE
Confidence 37999999999999974
No 17
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=58.13 E-value=21 Score=26.94 Aligned_cols=49 Identities=18% Similarity=0.352 Sum_probs=36.9
Q ss_pred cCcccceeeecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEec
Q 035700 96 EGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVG 159 (179)
Q Consensus 96 dG~~igRkVDL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVG 159 (179)
+|.++--.||...+=++.++..++.+..-.. .--..-|||.|||..-|-
T Consensus 9 ~gg~vDw~V~~~~~L~F~DvL~~I~~vlp~a---------------T~tAFeYEDE~gDRITVR 57 (91)
T cd06395 9 NGGAVDWTVQSGPQLLFRDVLDVIGQVLPEA---------------TTTAFEYEDEDGDRITVR 57 (91)
T ss_pred CCCcccccccCcccccHHHHHHHHHHhcccc---------------cccceeeccccCCeeEec
Confidence 4567788888888889999999998876521 012358999999998774
No 18
>PF06463 Mob_synth_C: Molybdenum Cofactor Synthesis C; InterPro: IPR010505 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This entry represents MoaA, which belongs to a family of enzymes involved in the synthesis of metallo-cofactors (IPR000385 from INTERPRO). Each subunit of the MoaA dimer is comprised of an N-terminal SAM domain (IPR007197 from INTERPRO) that contains the [4Fe-4S] cluster typical for this family of enzymes, as well as an additional [4Fe-4S] cluster in the C-terminal domain that is unique to MoaA proteins []. The unique Fe site of the C-terminal [4Fe-4S] cluster is thought to be involved in the binding and activation of 5'-GTP. Mutations in the human MoCF biosynthesis proteins MOCS1, MOCS2 or GEPH cause MoCF Deficiency type A (MOCOD), causing the loss of activity of MoCF-containing enzymes, resulting in neurological abnormalities and death [].; GO: 0051539 4 iron, 4 sulfur cluster binding, 0006777 Mo-molybdopterin cofactor biosynthetic process, 0019008 molybdopterin synthase complex; PDB: 2FB2_A 2FB3_A 1TV8_B 1TV7_A.
Probab=46.43 E-value=46 Score=25.78 Aligned_cols=65 Identities=11% Similarity=0.029 Sum_probs=29.3
Q ss_pred eecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEecCcChhHHhhccceeEEe
Q 035700 104 LDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVGDVPWEMFLSTVRRLKIT 176 (179)
Q Consensus 104 VDL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVGDvPW~~Fv~svKRLrI~ 176 (179)
.--..|-+++++...|++-|...... ..+ ..+. ......+..|..=++.-+-= .||.+|.||||.
T Consensus 17 ~~~~~~~~~~ei~~~l~~~~~~~~~~--~~~---~~pa--~~y~~~g~~g~vG~I~~~s~-~FC~~CNRiRlT 81 (128)
T PF06463_consen 17 WFEEEFVPAQEILERLEERYELLPSE--KRP---NGPA--RYYRIPGGKGRVGFISPVSN-PFCSSCNRIRLT 81 (128)
T ss_dssp B-TTTB--HHHHHHHHHHHS-EEEE----SS---T-SS--EEEEETTT--EEEEE-TTTS---GGG--EEEE-
T ss_pred chhhcCcCHHHHHHHHHHhCCccccc--ccc---CCcc--eEEEECCCCcEEEEEeCCCC-CCCCcCCEEEEc
Confidence 34467888999999999999853211 110 1111 11122333344444443332 399999999985
No 19
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=45.39 E-value=66 Score=28.28 Aligned_cols=76 Identities=12% Similarity=0.191 Sum_probs=43.6
Q ss_pred EEecCcccceeee--cCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEecCcChhHHhhcc
Q 035700 93 VYMEGIPIGRKLD--LLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVGDVPWEMFLSTV 170 (179)
Q Consensus 93 V~MdG~~igRkVD--L~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVGDvPW~~Fv~sv 170 (179)
.+.+-.|+|+--+ -..+=+.+++...|++.|...... . ...+........|..|-+=++.-+-.. ||.+|
T Consensus 187 ~~ie~mP~g~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~ig~I~~~s~~-fC~~C 258 (329)
T PRK13361 187 AFIEEMPLGEIDERRRARHCSSDEVRAIIETRYPLTPSN-K------RTGGPARYYTMADSPIHIGFISPHSHN-FCHEC 258 (329)
T ss_pred EEEecccCCCccchhhccCcCHHHHHHHHHHhCCcccCC-C------CCCCCCeEEEECCCCeEEEEEcCCCcc-ccccC
Confidence 3566778887322 345667889999999887632110 0 011111111223444455455544454 99999
Q ss_pred ceeEEe
Q 035700 171 RRLKIT 176 (179)
Q Consensus 171 KRLrI~ 176 (179)
.||||.
T Consensus 259 nr~rlt 264 (329)
T PRK13361 259 NRVRVT 264 (329)
T ss_pred CeEEEc
Confidence 999985
No 20
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=42.70 E-value=1e+02 Score=22.69 Aligned_cols=65 Identities=15% Similarity=0.213 Sum_probs=47.1
Q ss_pred eEEEEecCcccceeeecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCC-CeEEecCcChhHHhh
Q 035700 90 FVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEG-DWMMVGDVPWEMFLS 168 (179)
Q Consensus 90 ~VKV~MdG~~igRkVDL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eG-D~mLVGDvPW~~Fv~ 168 (179)
-|||+-++ .=.|-...=-+|.+|...|.+-+.... .+-+|-|.|.+. +...++|.-++.=.+
T Consensus 4 vvKV~f~~---tIaIrvp~~~~y~~L~~ki~~kLkl~~--------------e~i~LsYkde~s~~~v~l~d~dle~aws 66 (80)
T cd06406 4 VVKVHFKY---TVAIQVARGLSYATLLQKISSKLELPA--------------EHITLSYKSEASGEDVILSDTNMEDVWS 66 (80)
T ss_pred EEEEEEEE---EEEEEcCCCCCHHHHHHHHHHHhCCCc--------------hhcEEEeccCCCCCccCcChHHHHHHHH
Confidence 48999987 334555556689999999999998631 224789988664 444449988888777
Q ss_pred ccc
Q 035700 169 TVR 171 (179)
Q Consensus 169 svK 171 (179)
.|+
T Consensus 67 ~~~ 69 (80)
T cd06406 67 QAK 69 (80)
T ss_pred hhc
Confidence 776
No 21
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]
Probab=38.79 E-value=14 Score=30.42 Aligned_cols=55 Identities=20% Similarity=0.372 Sum_probs=39.2
Q ss_pred cCcccceeeecCCCCCHHHHHHHH---HHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEecCcC
Q 035700 96 EGIPIGRKLDLLAHDGYHDLIRTL---DYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVGDVP 162 (179)
Q Consensus 96 dG~~igRkVDL~~~~sY~eL~~~L---e~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVGDvP 162 (179)
-|-.|--+++|..|++|++...+. .++|..+.. | ..-|. -+....||+++-|-++
T Consensus 48 AGlDY~~~~~l~~h~s~e~fl~~~~~~~rl~~~tt~-----~------~~~~~-~~~f~~~d~llFG~Es 105 (155)
T COG0219 48 AGLDYHEKASLTEHDSLEAFLEAEPIGGRLFALTTK-----G------TTTYT-DVSFQKGDYLLFGPES 105 (155)
T ss_pred cccchHhhcceEEeCCHHHHHhhccCCceEEEEEec-----c------ccccc-cccCCCCCEEEECCCC
Confidence 477899999999999999999998 467765321 1 01121 2444669999999764
No 22
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=35.86 E-value=1.4e+02 Score=20.38 Aligned_cols=70 Identities=13% Similarity=0.098 Sum_probs=48.7
Q ss_pred cceEEEEecCccc---ceeeecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEE-EEeC-CCCeEEecC-c
Q 035700 88 TFFVKVYMEGIPI---GRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLT-YEDK-EGDWMMVGD-V 161 (179)
Q Consensus 88 ~~~VKV~MdG~~i---gRkVDL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~-YeD~-eGD~mLVGD-v 161 (179)
..++||+++...- -+.|=+.....-.+++.++.+.|++. .+..+|.|. +.-. .....|-.| .
T Consensus 2 ~~~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~------------~~~~~y~L~~~~~~~~~er~L~~~E~ 69 (93)
T PF00788_consen 2 SGVLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLA------------EDPSDYCLVEVEESGGEERPLDDDEC 69 (93)
T ss_dssp EEEEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTS------------SSGGGEEEEEEECTTTEEEEETTTSB
T ss_pred CeEEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCC------------CCCCCEEEEEEEcCCCEEEEcCCCCc
Confidence 3579999987553 68899999999999999999999962 122568884 4444 444444433 3
Q ss_pred ChhHHhhc
Q 035700 162 PWEMFLST 169 (179)
Q Consensus 162 PW~~Fv~s 169 (179)
|+..+..-
T Consensus 70 pl~i~~~~ 77 (93)
T PF00788_consen 70 PLQIQLQW 77 (93)
T ss_dssp HHHHHHTT
T ss_pred hHHHHHhC
Confidence 77766544
No 23
>PF14688 DUF4461: Domain of unknown function (DUF4461)
Probab=30.66 E-value=32 Score=30.90 Aligned_cols=23 Identities=39% Similarity=0.835 Sum_probs=17.2
Q ss_pred EeCCCCeEE-ecCcC--hhHHhhccc
Q 035700 149 EDKEGDWMM-VGDVP--WEMFLSTVR 171 (179)
Q Consensus 149 eD~eGD~mL-VGDvP--W~~Fv~svK 171 (179)
.|.+|++|| +|||| |..|++.+.
T Consensus 92 v~~~G~v~L~~~Dv~~~W~~~l~~l~ 117 (313)
T PF14688_consen 92 VSLDGHVMLGTGDVPHQWTSFLERLP 117 (313)
T ss_pred cCCCCCEEecCCCcHHHHHHHHHhCC
Confidence 467888777 78887 888887654
No 24
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.88 E-value=23 Score=32.39 Aligned_cols=58 Identities=22% Similarity=0.330 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEe--CCCCeEEecCcChh---HHhhccc
Q 035700 110 DGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYED--KEGDWMMVGDVPWE---MFLSTVR 171 (179)
Q Consensus 110 ~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD--~eGD~mLVGDvPW~---~Fv~svK 171 (179)
+.|.-.+..++.||.... .+ .|.-+...+.-| +-||. .+|+|.+.||.||. .|.+.|-
T Consensus 18 n~ya~~~~~aaa~~~~al--~~-~G~~l~ss~~a~-le~e~~~~~~~~rq~gdll~~~v~~f~e~~~ 80 (352)
T KOG3579|consen 18 NVYAAVSGVAAAMNADAL--AD-NGRSLSSSGFAY-LEYENRHGSGLWRQLGDLLTAAVRDFAEPVP 80 (352)
T ss_pred chhhhhHHHHHhhhhhhh--hc-cCcccccchhhh-hhhhhcccccchhhhccchHHHHHhhccccc
Confidence 478888999999998532 11 232222334445 37876 56899999999995 4655544
No 25
>KOG3957 consensus Predicted L-carnitine dehydratase/alpha-methylacyl-CoA racemase [Lipid transport and metabolism]
Probab=28.81 E-value=98 Score=28.95 Aligned_cols=73 Identities=21% Similarity=0.258 Sum_probs=48.3
Q ss_pred cceeeecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEecCcChhHHhhccceeEE
Q 035700 100 IGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVGDVPWEMFLSTVRRLKI 175 (179)
Q Consensus 100 igRkVDL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVGDvPW~~Fv~svKRLrI 175 (179)
=|-.||-++..+-.-|+.-|..-+....--++..+ .....-.-|. ||+-+||-.|.||-.- .-|.+.|+++..
T Consensus 177 kGqviD~~m~eg~ayl~S~v~~~y~~s~~ea~R~~-~~~G~~~~Y~-tykTkDG~fmavga~e-pQF~~~l~~ll~ 249 (387)
T KOG3957|consen 177 KGQVIDCNMLEGVAYLLSFVQKNYLQSLWEADRYG-TAHGSIPPYQ-TYKTKDGYFMAVGALE-PQFYELLKKLLG 249 (387)
T ss_pred CceEEEechhHhHHHHHHHHHHHhhhhhccccccc-cccCCCccce-eeeccCceEEEecccc-HHHHHHHHHhhC
Confidence 46778888888888888888776654321122211 1122334577 9999999999999864 357777777643
No 26
>PF02013 CBM_10: Cellulose or protein binding domain; InterPro: IPR002883 This domain is found in two distinct sets of proteins with different functions. Those found in aerobic bacteria bind cellulose (or other carbohydrates); but in anaerobic fungi they are protein binding domains, referred to as dockerin domains or docking domains. They are believed to be responsible for the assembly of a multiprotein cellulase/hemicellulase complex, similar to the cellulosome found in certain anaerobic bacteria. The recycling of photosynthetically fixed carbon in plant cell walls is a key microbial process. Enzyme systems that attack the plant cell wall contain noncatalytic carbohydrate-binding modules that mediate attachment to this composite structure and play a pivotal role in maximizing the hydrolytic process. In anaerobes, the degradation is carried out by a high molecular weight, multifunctional complex termed the cellulosome. This consists of a number of independent enzyme components, each of which contains a conserved 40-residue dockerin domain, which functions to bind the enzyme to a cohesin domain within the scaffoldin protein [, ]. In anaerobic bacteria that degrade plant cell walls, exemplified by Clostridium thermocellum, the dockerin domains of the catalytic polypeptides can bind equally well to any cohesin from the same organism. More recently, anaerobic fungi, typified by Piromyces equi, have been suggested to also synthesise a cellulosome complex, although the dockerin sequences of the bacterial and fungal enzymes are completely different []. For example, the fungal enzymes contain one, two or three copies of the dockerin sequence in tandem within the catalytic polypeptide. In contrast, all the C. thermocellum cellulosome catalytic components contain a single dockerin domain. The anaerobic bacterial dockerins are homologous to EF hands (calcium-binding motifs) and require calcium for activity whereas the fungal dockerin does not require calcium. Finally, the interaction between cohesin and dockerin appears to be species specific in bacteria, there is almost no species specificity of binding within fungal species and no identified sites that distinguish different species. The structure of dockerin from P. equi contains two helical stretches and four short beta-strands which form an antiparallel sheet structure adjacent to an additional short twisted parallel strand. The N- and C-termini are adjacent to each other. Aerobic bacteria contain related regions, however these appear to function as cellulose/carbohydrate binding domains.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2J4M_A 2J4N_A 1E8R_A 1QLD_A 1E8P_A 1E8Q_A.
Probab=28.32 E-value=18 Score=22.86 Aligned_cols=12 Identities=33% Similarity=0.913 Sum_probs=9.0
Q ss_pred EEEEEeCCCCeE
Q 035700 145 VLTYEDKEGDWM 156 (179)
Q Consensus 145 vl~YeD~eGD~m 156 (179)
.+.|.|.+|+|=
T Consensus 16 ~v~y~d~~g~WG 27 (36)
T PF02013_consen 16 EVVYTDDDGGWG 27 (36)
T ss_dssp --SEEETTEEEE
T ss_pred ceEEcCCCCCEe
Confidence 569999999983
No 27
>PF03625 DUF302: Domain of unknown function DUF302 ; InterPro: IPR005180 This domain is found in an undescribed set of proteins. It normally occurs uniquely within a sequence, but is found as a tandem repeat (Q9X8B8 from SWISSPROT). It has an interesting phylogenetic distribution with the majority of examples in bacteria and archaea, but it is also found in Drosophila melanogaster (e.g. Q9VA18 from SWISSPROT). The hypothetical protein TT1751 from Thermus thermophilus has a beta-alpha-beta(4)-alpha structural fold [].; PDB: 1Q9U_A 1J3M_B.
Probab=28.13 E-value=33 Score=22.98 Aligned_cols=18 Identities=39% Similarity=0.735 Sum_probs=13.5
Q ss_pred CceEEEEEeCCCCeEEec
Q 035700 142 TCHVLTYEDKEGDWMMVG 159 (179)
Q Consensus 142 ~~~vl~YeD~eGD~mLVG 159 (179)
...+++|||++|...+.=
T Consensus 45 Pcrv~vye~~~G~~~v~~ 62 (65)
T PF03625_consen 45 PCRVLVYEDEDGKVWVSY 62 (65)
T ss_dssp SEEEEEEE-ETTEEEEEE
T ss_pred CeEEEEEEecCCeEEEEE
Confidence 457999999999877653
No 28
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=26.25 E-value=41 Score=28.26 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCeEEecCcChhHHhhcccee
Q 035700 142 TCHVLTYEDKEGDWMMVGDVPWEMFLSTVRRL 173 (179)
Q Consensus 142 ~~~vl~YeD~eGD~mLVGDvPW~~Fv~svKRL 173 (179)
.+|..-|.+. -+..|.||+++++.++||
T Consensus 98 ~G~~ae~~~~----~i~T~a~~eev~~l~~~L 125 (190)
T PF09840_consen 98 LGYKAEYRED----VIKTDAPLEEVVELAERL 125 (190)
T ss_pred CCCeeEEeCC----eEEecCCHHHHHHHHHHH
Confidence 4566677655 888999999999999987
No 29
>PF07929 PRiA4_ORF3: Plasmid pRiA4b ORF-3-like protein; InterPro: IPR012912 Members of this family are similar to the protein product of ORF-3 (Q44206 from SWISSPROT) found on plasmid pRiA4 in the bacterium Agrobacterium rhizogenes. This plasmid is responsible for tumourigenesis at wound sites of plants infected by this bacterium, but the ORF-3 product does not seem to be involved in the pathogenetic process []. Other proteins found in this family are annotated as being putative TnpR resolvases (Q9LCU7 from SWISSPROT, Q50439 from SWISSPROT), but no further evidence was found to back this. Moreover, another member of this family is described as a probable lexA repressor (Q7UEI4 from SWISSPROT) and in fact carries a LexA DNA binding domain (IPR006199 from INTERPRO), but no references were found to expand on this. ; PDB: 2I1S_A.
Probab=23.84 E-value=1e+02 Score=24.63 Aligned_cols=37 Identities=27% Similarity=0.420 Sum_probs=30.3
Q ss_pred ceEEEEecCc--ccceeeecCCCCCHHHHHHHHHHhhcc
Q 035700 89 FFVKVYMEGI--PIGRKLDLLAHDGYHDLIRTLDYMFST 125 (179)
Q Consensus 89 ~~VKV~MdG~--~igRkVDL~~~~sY~eL~~~Le~MF~~ 125 (179)
--+||..+|. +|=|.|.+..--+..+|...|...|+-
T Consensus 5 y~lkV~L~~~~p~iwRri~Vp~~~tl~~Lh~~Iq~afgw 43 (179)
T PF07929_consen 5 YQLKVSLKGSKPPIWRRIEVPADITLADLHEVIQAAFGW 43 (179)
T ss_dssp EEEEEEETT-SS-EEEEEEEETT-BHHHHHHHHHHHTT-
T ss_pred EEEEEEEcCCCCCeEEEEEECCCCCHHHHHHHHHHHhCc
Confidence 4578988874 899999999999999999999999974
No 30
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription. ; PDB: 2DT7_A.
Probab=23.55 E-value=14 Score=22.22 Aligned_cols=17 Identities=24% Similarity=0.591 Sum_probs=11.5
Q ss_pred ecCcChhHHhhccceeE
Q 035700 158 VGDVPWEMFLSTVRRLK 174 (179)
Q Consensus 158 VGDvPW~~Fv~svKRLr 174 (179)
-|..||++|-+-.|.||
T Consensus 4 s~~d~f~eFY~rlk~Ik 20 (28)
T PF12108_consen 4 SGGDPFSEFYERLKEIK 20 (28)
T ss_dssp -S--HHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHH
Confidence 47889999998777664
No 31
>PF13665 DUF4150: Domain of unknown function (DUF4150)
Probab=23.26 E-value=47 Score=25.55 Aligned_cols=25 Identities=28% Similarity=0.210 Sum_probs=21.5
Q ss_pred cceEEEEecCcccceeeecCCCCCH
Q 035700 88 TFFVKVYMEGIPIGRKLDLLAHDGY 112 (179)
Q Consensus 88 ~~~VKV~MdG~~igRkVDL~~~~sY 112 (179)
..-.+|+.||.|+.|-.|+...+++
T Consensus 81 ~~S~~V~ieG~p~~R~~d~~~~N~~ 105 (110)
T PF13665_consen 81 SGSFTVKIEGKPATRLTDLTWMNNK 105 (110)
T ss_pred ccCCeEEECCEEEEEcCCCccccCC
Confidence 4557899999999999999988864
No 32
>COG3816 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.47 E-value=57 Score=27.70 Aligned_cols=18 Identities=56% Similarity=0.890 Sum_probs=14.0
Q ss_pred EecCcccceeeecCCCCCHHHHHHHHHHhhcc
Q 035700 94 YMEGIPIGRKLDLLAHDGYHDLIRTLDYMFST 125 (179)
Q Consensus 94 ~MdG~~igRkVDL~~~~sY~eL~~~Le~MF~~ 125 (179)
|-.|.||||+ .|-++|..
T Consensus 56 FylGTPIGR~--------------plVrLFSt 73 (205)
T COG3816 56 FYLGTPIGRK--------------PLVRLFST 73 (205)
T ss_pred EEecCccchH--------------HHHHHHHH
Confidence 5568999996 67788874
No 33
>PLN02622 iron superoxide dismutase
Probab=22.33 E-value=1.7e+02 Score=25.78 Aligned_cols=40 Identities=8% Similarity=0.102 Sum_probs=19.0
Q ss_pred HHHHHHHHhhcccccc-cccCCCCCCCCCCceEEEEEeCCC
Q 035700 114 DLIRTLDYMFSTNIIW-SEMDGSVSAYSETCHVLTYEDKEG 153 (179)
Q Consensus 114 eL~~~Le~MF~~~~~~-~e~~g~~~~~~~~~~vl~YeD~eG 153 (179)
.|..++++=|+..... .++........+++|+..+.|.++
T Consensus 143 ~L~~aI~~~FGS~d~Fk~~F~~aA~s~fGSGW~WLv~d~~~ 183 (261)
T PLN02622 143 GVLEQIEKDFGSFTNFREKFTEAALTLFGSGWVWLVLKREE 183 (261)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhcCCceEEEEEEeCCC
Confidence 4666666666642111 111000011234778888777654
No 34
>PRK11430 putative CoA-transferase; Provisional
Probab=22.21 E-value=91 Score=28.43 Aligned_cols=25 Identities=4% Similarity=0.189 Sum_probs=19.1
Q ss_pred EEEeCCCCeEEec---CcChhHHhhccce
Q 035700 147 TYEDKEGDWMMVG---DVPWEMFLSTVRR 172 (179)
Q Consensus 147 ~YeD~eGD~mLVG---DvPW~~Fv~svKR 172 (179)
+|+=+|| |+.++ |.-|..||+...|
T Consensus 241 ~y~~~DG-~i~i~~~~~~~w~~l~~~lg~ 268 (381)
T PRK11430 241 VFDTQDK-PITICCGNDKLFSALCQALEL 268 (381)
T ss_pred ceEcCCC-cEEEEeCCHHHHHHHHHHhCC
Confidence 7999999 77774 4579988877654
No 35
>COG3286 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.98 E-value=39 Score=29.07 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=23.0
Q ss_pred CCceEEEEEeCCCCeEEecCcChhHHhhcccee
Q 035700 141 ETCHVLTYEDKEGDWMMVGDVPWEMFLSTVRRL 173 (179)
Q Consensus 141 ~~~~vl~YeD~eGD~mLVGDvPW~~Fv~svKRL 173 (179)
..+|.+-|.+.+ +--+.||++|++.|++|
T Consensus 100 ~~GyrVevr~~~----l~T~ap~~ev~E~vreL 128 (204)
T COG3286 100 LLGYRVEVRGGE----LKTNAPWSEVVELVREL 128 (204)
T ss_pred hCCceEEeeCce----eecCCCHHHHHHHHHHH
Confidence 346777777544 88899999999999876
No 36
>PF09676 TraV: Type IV conjugative transfer system lipoprotein (TraV); InterPro: IPR014118 This entry represents TraV, a component of a conjugative type IV secretion system. TraV is an outer membrane lipoprotein that is believed to interact with the secretin TraK [, , ]. This protein contains three conserved cysteines in the N-terminal half.
Probab=21.77 E-value=63 Score=24.19 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=16.0
Q ss_pred ceEEEEEeCCCCeEEecCc
Q 035700 143 CHVLTYEDKEGDWMMVGDV 161 (179)
Q Consensus 143 ~~vl~YeD~eGD~mLVGDv 161 (179)
=|+.-|+|.+||+..-|.|
T Consensus 92 iwiaP~~D~~g~l~~~~~V 110 (119)
T PF09676_consen 92 IWIAPWEDADGDLHDPGYV 110 (119)
T ss_pred EEEeeeECCCCCEeccceE
Confidence 4889999999999877765
Done!