Query 035700
Match_columns 179
No_of_seqs 191 out of 546
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 08:52:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035700.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035700hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wmh_B Partitioning defective- 96.3 0.0098 3.3E-07 43.4 6.5 71 87-171 5-76 (86)
2 1vd2_A Protein kinase C, IOTA 96.1 0.018 6.2E-07 42.0 7.0 57 87-158 5-61 (89)
3 2kkc_A Sequestosome-1; P62, PB 95.6 0.029 9.8E-07 41.9 6.3 62 87-161 4-80 (102)
4 2ktr_A Sequestosome-1; autopha 95.0 0.06 2E-06 41.2 6.5 64 85-161 17-95 (117)
5 1q1o_A Cell division control p 91.7 0.57 2E-05 34.7 6.8 75 87-170 4-85 (98)
6 2bkf_A Zinc-finger protein NBR 90.3 0.88 3E-05 33.1 6.5 55 89-159 7-61 (87)
7 1oey_J P40-PHOX, neutrophil cy 89.3 0.64 2.2E-05 35.0 5.2 40 105-160 28-67 (107)
8 1wj6_A KIAA0049 protein, RSGI 88.8 0.93 3.2E-05 33.9 5.8 64 89-170 15-78 (101)
9 1pqs_A Cell division control p 84.1 1 3.5E-05 31.7 3.7 59 104-171 6-65 (77)
10 1oey_A P67-PHOX, neutrophil cy 81.7 7.8 0.00027 27.6 7.6 64 89-169 6-70 (83)
11 1e8p_A Endoglucanase, dockerin 67.8 1.7 5.9E-05 28.2 1.0 13 145-157 20-32 (46)
12 3o27_A Putative uncharacterize 49.4 7 0.00024 27.2 1.5 26 142-175 43-68 (68)
13 2npt_A Dual specificity mitoge 41.2 64 0.0022 23.9 5.7 56 89-159 15-71 (106)
14 2j4m_A Endoglucanase 45A; dock 38.2 6.7 0.00023 29.2 -0.0 13 145-157 21-33 (100)
15 2yim_A Probable alpha-methylac 38.0 17 0.00058 31.7 2.6 27 144-171 224-253 (360)
16 2lic_A Vitellogenin; lipid tra 34.4 14 0.00046 22.2 0.9 11 8-18 15-25 (35)
17 2g04_A Probable fatty-acid-COA 32.5 22 0.00074 31.0 2.3 28 143-171 225-255 (359)
18 2i1s_A Hypothetical protein; m 27.2 55 0.0019 25.5 3.7 38 88-125 8-47 (188)
19 1jyo_A SICP; bacterial pathoge 25.9 57 0.0019 24.8 3.4 49 112-161 4-52 (130)
20 1k3e_A CEST; chaperone, secret 24.4 78 0.0027 24.8 4.0 52 109-160 2-54 (156)
21 3c8c_A Methyl-accepting chemot 23.8 33 0.0011 25.3 1.7 34 141-174 204-238 (240)
No 1
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=96.34 E-value=0.0098 Score=43.36 Aligned_cols=71 Identities=17% Similarity=0.148 Sum_probs=53.0
Q ss_pred ccceEEEEecCcccceeeecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEecCc-ChhH
Q 035700 87 ATFFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVGDV-PWEM 165 (179)
Q Consensus 87 ~~~~VKV~MdG~~igRkVDL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVGDv-PW~~ 165 (179)
+..-||..-|++--=-.+|-....+|++|+..|+++|.+. ...+++.|.|.|||++-+-++ =..+
T Consensus 5 ~~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~--------------~~~f~i~Y~D~dGDLlpInnDdnl~~ 70 (86)
T 1wmh_B 5 SIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIP--------------GLDVLLGYTDAHGDLLPLTNDDSLHR 70 (86)
T ss_dssp CEEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCT--------------TCCCEEEEECTTSCEEECCSHHHHHH
T ss_pred CEEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCC--------------CCCEEEEEECCCCCEeeecCHHHHHH
Confidence 3466888888865444666677889999999999999852 135899999999999977543 4555
Q ss_pred Hhhccc
Q 035700 166 FLSTVR 171 (179)
Q Consensus 166 Fv~svK 171 (179)
=+.++|
T Consensus 71 Al~~a~ 76 (86)
T 1wmh_B 71 ALASGP 76 (86)
T ss_dssp HTTSSS
T ss_pred HHHhCC
Confidence 555565
No 2
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=96.14 E-value=0.018 Score=41.97 Aligned_cols=57 Identities=23% Similarity=0.248 Sum_probs=43.6
Q ss_pred ccceEEEEecCcccceeeecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEe
Q 035700 87 ATFFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMV 158 (179)
Q Consensus 87 ~~~~VKV~MdG~~igRkVDL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLV 158 (179)
+..=|||+-+|.- |.+.+..--+|++|..+|.++|... .+..+++.|.|.|||+.-+
T Consensus 5 ~~vkvK~~~~gdi--~~~~v~~~i~~~~L~~kv~~~~~~~-------------~~~~f~lky~DEeGD~iti 61 (89)
T 1vd2_A 5 SQVRVKAYYRGDI--MITHFEPSISFEGLCNEVRDMCSFD-------------NEQLFTMKWIDEEGDPCTV 61 (89)
T ss_dssp SCEEEEEESSSCE--EEEEECTTCCHHHHHHHHHHHTTCC-------------SSCCEEEEECCSSSCCEEC
T ss_pred CeEEEEEEeCCeE--EEEECCCCCCHHHHHHHHHHHhCCC-------------CCCeEEEEEECCCCCcccc
Confidence 3466899999964 4444445669999999999999952 1245899999999998654
No 3
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=95.61 E-value=0.029 Score=41.86 Aligned_cols=62 Identities=16% Similarity=0.234 Sum_probs=44.7
Q ss_pred ccceEEEEecCc----ccceeeecCC-----------CCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeC
Q 035700 87 ATFFVKVYMEGI----PIGRKLDLLA-----------HDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDK 151 (179)
Q Consensus 87 ~~~~VKV~MdG~----~igRkVDL~~-----------~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~ 151 (179)
.+.-||++..|. .-=|++-|.. ..+|++|...+.++|... . +..|.+.|.|.
T Consensus 4 m~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l------~-------~~~f~l~Y~De 70 (102)
T 2kkc_A 4 MSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPAL------R-------PGGFQAHYRAE 70 (102)
T ss_dssp CEEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTS------C-------SSCEEEEEECT
T ss_pred ceEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHcccc------C-------CCcEEEEEECC
Confidence 356789999752 2345555532 248999999999999731 1 24599999999
Q ss_pred CCCeEEecCc
Q 035700 152 EGDWMMVGDV 161 (179)
Q Consensus 152 eGD~mLVGDv 161 (179)
|||+.-+.+.
T Consensus 71 dGDlItiSsD 80 (102)
T 2kkc_A 71 RGDLVAFSSD 80 (102)
T ss_dssp TCCEEEECSH
T ss_pred CCCEEEecCH
Confidence 9999877654
No 4
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=95.01 E-value=0.06 Score=41.16 Aligned_cols=64 Identities=16% Similarity=0.232 Sum_probs=44.6
Q ss_pred CCccceEEEEecCc----ccceeeecC-----------CCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEE
Q 035700 85 SSATFFVKVYMEGI----PIGRKLDLL-----------AHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYE 149 (179)
Q Consensus 85 ~~~~~~VKV~MdG~----~igRkVDL~-----------~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~Ye 149 (179)
...+.-||++..|. .==|++-|. .-.+|++|...+.++|... . +..|.+.|.
T Consensus 17 ~~~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L------~-------~~~f~l~Yk 83 (117)
T 2ktr_A 17 HMGSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPAL------R-------PGGFQAHYR 83 (117)
T ss_dssp ---CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTS------C-------SSCEEEEEE
T ss_pred ccccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHcccc------C-------CCcEEEEEE
Confidence 34568899999751 223555543 2459999999999999631 1 245999999
Q ss_pred eCCCCeEEecCc
Q 035700 150 DKEGDWMMVGDV 161 (179)
Q Consensus 150 D~eGD~mLVGDv 161 (179)
|.|||+.-+-..
T Consensus 84 DEdGDlItISsD 95 (117)
T 2ktr_A 84 AERGDLVAFSSD 95 (117)
T ss_dssp CTTCCEEEECSH
T ss_pred CCCCCEEEecCH
Confidence 999998876543
No 5
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=91.68 E-value=0.57 Score=34.67 Aligned_cols=75 Identities=15% Similarity=0.295 Sum_probs=53.3
Q ss_pred ccceEEEEecCc------ccceeeecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEecC
Q 035700 87 ATFFVKVYMEGI------PIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVGD 160 (179)
Q Consensus 87 ~~~~VKV~MdG~------~igRkVDL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVGD 160 (179)
++.-|||+-+.. .=.|.|=...-=+|++|+.++.+-|.... ..+. .....+-|+|.|||+...++
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~-~~~i--------~~~~klkYkDEdGD~Vtl~s 74 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTH-NNNI--------SPITKIKYQDEDGDFVVLGS 74 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHC-SSCC--------CCCCCEEEECSSSCEEEECS
T ss_pred ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCc-cccc--------cceeEEEEEcCCCCEEEEcC
Confidence 345688887742 12367777788899999999999998631 0010 12357899999999987775
Q ss_pred c-ChhHHhhcc
Q 035700 161 V-PWEMFLSTV 170 (179)
Q Consensus 161 v-PW~~Fv~sv 170 (179)
. =|++=+.++
T Consensus 75 ddDl~~A~e~~ 85 (98)
T 1q1o_A 75 DEDWNVAKEML 85 (98)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 4 788887775
No 6
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=90.29 E-value=0.88 Score=33.12 Aligned_cols=55 Identities=11% Similarity=0.113 Sum_probs=42.3
Q ss_pred ceEEEEecCcccceeeecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEec
Q 035700 89 FFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVG 159 (179)
Q Consensus 89 ~~VKV~MdG~~igRkVDL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVG 159 (179)
.-+||.-.|...=--|.-..--.+++|...+..+|+. ..++|.|.|.|||-.-|=
T Consensus 7 v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L----------------~~~~ikY~DEenD~v~i~ 61 (87)
T 2bkf_A 7 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDL----------------NTIQIKYLDEENEEVSIN 61 (87)
T ss_dssp EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTC----------------SSEEEEEECTTSCEEEEC
T ss_pred EEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCC----------------CceEEEEEcCCCCEEEEe
Confidence 3478888887544345444477899999999999996 247999999999987663
No 7
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=89.30 E-value=0.64 Score=35.04 Aligned_cols=40 Identities=28% Similarity=0.332 Sum_probs=33.7
Q ss_pred ecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEecC
Q 035700 105 DLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVGD 160 (179)
Q Consensus 105 DL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVGD 160 (179)
||..--.|++|..-..+-|... +-+|-|+|.|||+.-+=|
T Consensus 28 dl~~~P~ykdLl~lmr~~F~~~----------------DIaLNYrD~eGDLIrild 67 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQRE----------------DIALNYRDAEGDLVRLLS 67 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHCCS----------------SEEEEEECTTSCEEECCS
T ss_pred ccccCCCHHHHHHHHHHHhccc----------------ceeeeeecCCCCEEEEcc
Confidence 6788889999999999999842 358999999999987654
No 8
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=88.78 E-value=0.93 Score=33.86 Aligned_cols=64 Identities=11% Similarity=0.114 Sum_probs=47.8
Q ss_pred ceEEEEecCcccceeeecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEecCcChhHHhh
Q 035700 89 FFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVGDVPWEMFLS 168 (179)
Q Consensus 89 ~~VKV~MdG~~igRkVDL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVGDvPW~~Fv~ 168 (179)
.-+||.-.|...=--|.-..--.+++|...+..+|+.. .++|.|.|.|||-.-|= -+.+|-+
T Consensus 15 v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~----------------~~~IkY~DEenD~V~i~--Sq~E~eE 76 (101)
T 1wj6_A 15 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN----------------TIQIKYLDEENEEVSIN--SQGEYEE 76 (101)
T ss_dssp EEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCS----------------SBCCEEECTTSCEECCC--SHHHHHH
T ss_pred EEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCC----------------ceEEEEecCCCCEEEEe--cHHHHHH
Confidence 45899999976544564455778999999999999962 36899999999988763 3555544
Q ss_pred cc
Q 035700 169 TV 170 (179)
Q Consensus 169 sv 170 (179)
.+
T Consensus 77 Al 78 (101)
T 1wj6_A 77 AL 78 (101)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 9
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=84.09 E-value=1 Score=31.70 Aligned_cols=59 Identities=19% Similarity=0.380 Sum_probs=41.1
Q ss_pred eecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEecC-cChhHHhhccc
Q 035700 104 LDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVGD-VPWEMFLSTVR 171 (179)
Q Consensus 104 VDL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVGD-vPW~~Fv~svK 171 (179)
|=...-=+|++|...+.+-|... .+ ........+-|+|.|||+...++ .=|++=+.++|
T Consensus 6 i~V~~~i~f~~L~~kI~~kl~~~--~~-------~~~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~~ 65 (77)
T 1pqs_A 6 LLVEKVWNFDDLIMAINSKISNT--HN-------NNISPITKIKYQDEDGDFVVLGSDEDWNVAKEMLA 65 (77)
T ss_dssp EECTTCCCSHHHHHHHHHHTTTT--TS-------SCSCSTTCCEEEETTTEEEECCSTTHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHccc--cc-------ccccceeEEEEEcCCCCEEEEcCHHHHHHHHHHHH
Confidence 33445558999999999999853 00 01013457899999999976665 57888877763
No 10
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=81.66 E-value=7.8 Score=27.60 Aligned_cols=64 Identities=8% Similarity=0.091 Sum_probs=50.2
Q ss_pred ceEEEEecCcccceeeecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEe-CCCCeEEecCcChhHHh
Q 035700 89 FFVKVYMEGIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYED-KEGDWMMVGDVPWEMFL 167 (179)
Q Consensus 89 ~~VKV~MdG~~igRkVDL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD-~eGD~mLVGDvPW~~Fv 167 (179)
.=|||+-. +.-.|....=-+|.+|...|.+-+.... ..-+|-|.| .+|.|++.+|.=++.=.
T Consensus 6 ~~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~l~~--------------~~~~LsYk~~~s~~~vi~~d~dl~~aw 68 (83)
T 1oey_A 6 YTLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLELRL--------------EHTKLSYRPRDSNELVPLSEDSMKDAW 68 (83)
T ss_dssp EEEEEESS---SEEEEEECTTCCHHHHHHHHHHHTTCCG--------------GGCCEEECCTTCSSCEECCTTTHHHHH
T ss_pred EEEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhCCCc--------------ceeEEEeeCCCCCCeeccChHHHHHHH
Confidence 34666665 6777888888899999999999998631 123689999 68888999999998877
Q ss_pred hc
Q 035700 168 ST 169 (179)
Q Consensus 168 ~s 169 (179)
..
T Consensus 69 ~~ 70 (83)
T 1oey_A 69 GQ 70 (83)
T ss_dssp TT
T ss_pred Hh
Confidence 76
No 11
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=67.82 E-value=1.7 Score=28.16 Aligned_cols=13 Identities=31% Similarity=0.820 Sum_probs=11.0
Q ss_pred EEEEEeCCCCeEE
Q 035700 145 VLTYEDKEGDWMM 157 (179)
Q Consensus 145 vl~YeD~eGD~mL 157 (179)
.++|+|.||+|=.
T Consensus 20 ~V~YtD~dG~WGV 32 (46)
T 1e8p_A 20 KVEYTDASGQWGV 32 (46)
T ss_dssp CEEEEETTEEEEE
T ss_pred eEEEEcCCCcccc
Confidence 4799999999954
No 12
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=49.44 E-value=7 Score=27.17 Aligned_cols=26 Identities=35% Similarity=0.612 Sum_probs=19.6
Q ss_pred CceEEEEEeCCCCeEEecCcChhHHhhccceeEE
Q 035700 142 TCHVLTYEDKEGDWMMVGDVPWEMFLSTVRRLKI 175 (179)
Q Consensus 142 ~~~vl~YeD~eGD~mLVGDvPW~~Fv~svKRLrI 175 (179)
..+.+.++|++|+..|+ .+-||+++|
T Consensus 43 D~fel~ve~kdgeIvLc--------ykRVKk~k~ 68 (68)
T 3o27_A 43 DTFILNMEQKDGDIVLS--------YKRVKELKI 68 (68)
T ss_dssp CCEEEEEEEETTEEEEE--------EEECGGGCC
T ss_pred CEEEEEEecCCCeEEEE--------ehhhhhccC
Confidence 56889999999999887 455555544
No 13
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=41.15 E-value=64 Score=23.91 Aligned_cols=56 Identities=14% Similarity=0.328 Sum_probs=39.2
Q ss_pred ceEEEEec-CcccceeeecCCCCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEec
Q 035700 89 FFVKVYME-GIPIGRKLDLLAHDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVG 159 (179)
Q Consensus 89 ~~VKV~Md-G~~igRkVDL~~~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVG 159 (179)
.-+.+... |.++--.||-..+=++.+|..++.+..-.- .--..-|||.+||..-|-
T Consensus 15 lVIRIk~p~~g~vDwaV~~~~~L~FrDvL~~I~~vmP~a---------------T~TAFeYEDE~gDRITVR 71 (106)
T 2npt_A 15 LVIRIKIPNSGAVDWTVHSGPQLLFRDVLDVIGQVLPEA---------------TTTAFEYEDEDGDRITVR 71 (106)
T ss_dssp EEEEEEETTTEEEEEEECC--CCCHHHHHHHHHHHSTTS---------------CCSEEEEECTTSCEEEEC
T ss_pred eEEEEECCCCCccccccCCcccccHHHHHHHHHHhCccc---------------eeeeeeeccccCCeeEEc
Confidence 33445554 667888888878889999999998876421 112468999999998774
No 14
>2j4m_A Endoglucanase 45A; dockerin, cellulosome, protein binding, small cysteine-rich; NMR {Piromyces equi} PDB: 2j4n_A
Probab=38.22 E-value=6.7 Score=29.16 Aligned_cols=13 Identities=31% Similarity=0.820 Sum_probs=10.9
Q ss_pred EEEEEeCCCCeEE
Q 035700 145 VLTYEDKEGDWMM 157 (179)
Q Consensus 145 vl~YeD~eGD~mL 157 (179)
.++|+|.||||=.
T Consensus 21 ~V~YtD~dG~WGV 33 (100)
T 2j4m_A 21 KVEYTDASGQWGV 33 (100)
T ss_dssp CCCEESSSCEEEE
T ss_pred eEEEEcCCCccce
Confidence 4699999999953
No 15
>2yim_A Probable alpha-methylacyl-COA racemase MCR (2-methylacyl-COA racemase) (2-arylpropionyl-COA...; isomerase, methyl-COA racemase; HET: MC4; 1.41A {Mycobacterium tuberculosis} PDB: 2gce_A* 1x74_A* 2gd0_A* 2gd2_A* 2gd6_A* 2gci_A*
Probab=38.03 E-value=17 Score=31.66 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCeEEec---CcChhHHhhccc
Q 035700 144 HVLTYEDKEGDWMMVG---DVPWEMFLSTVR 171 (179)
Q Consensus 144 ~vl~YeD~eGD~mLVG---DvPW~~Fv~svK 171 (179)
|- +|+=+||-|+.|+ |--|+.||+..-
T Consensus 224 y~-~y~t~DG~~i~i~~~~~~~w~~l~~~lg 253 (360)
T 2yim_A 224 YD-TYECADGRYVAVGAIEPQFYAAMLAGLG 253 (360)
T ss_dssp EE-EEECTTSCEEEEECCSHHHHHHHHHHHT
T ss_pred CC-eEECCCCCEEEEEeCCHHHHHHHHHHhC
Confidence 65 8999999888776 445999987654
No 16
>2lic_A Vitellogenin; lipid transport; HET: SEP; NMR {Apis mellifera}
Probab=34.39 E-value=14 Score=22.19 Aligned_cols=11 Identities=64% Similarity=0.438 Sum_probs=7.3
Q ss_pred CcCCCcccccc
Q 035700 8 SCSSSSTESST 18 (179)
Q Consensus 8 ~~~~~~~~~~~ 18 (179)
|.|||||+|+.
T Consensus 15 stssssissse 25 (35)
T 2lic_A 15 STSSSSISSSE 25 (35)
T ss_dssp CSCSSCCSTTC
T ss_pred ccccccccccc
Confidence 46677777654
No 17
>2g04_A Probable fatty-acid-COA racemase FAR; isomerase; 2.70A {Mycobacterium tuberculosis}
Probab=32.47 E-value=22 Score=30.99 Aligned_cols=28 Identities=29% Similarity=0.457 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCeEEec---CcChhHHhhccc
Q 035700 143 CHVLTYEDKEGDWMMVG---DVPWEMFLSTVR 171 (179)
Q Consensus 143 ~~vl~YeD~eGD~mLVG---DvPW~~Fv~svK 171 (179)
.|- +|+=+||-|+.|| |--|+.||+..-
T Consensus 225 ~y~-~y~t~DG~~i~i~~~~~~~w~~l~~~lg 255 (359)
T 2g04_A 225 FYR-CYETSDGKYMAVGAIEPQFFAALLSGLG 255 (359)
T ss_dssp TEE-EEECTTSCEEEEECCSHHHHHHHHHHTT
T ss_pred CCC-eEECCCCCEEEEEeCCHHHHHHHHHHhC
Confidence 365 8999999888876 345888887654
No 18
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=27.24 E-value=55 Score=25.53 Aligned_cols=38 Identities=18% Similarity=0.410 Sum_probs=34.8
Q ss_pred cceEEEEecCc--ccceeeecCCCCCHHHHHHHHHHhhcc
Q 035700 88 TFFVKVYMEGI--PIGRKLDLLAHDGYHDLIRTLDYMFST 125 (179)
Q Consensus 88 ~~~VKV~MdG~--~igRkVDL~~~~sY~eL~~~Le~MF~~ 125 (179)
..-+||..+|. +|=|.|.+..--...+|...|...|+-
T Consensus 8 iy~lrV~L~~~~p~iWRri~Vp~~~TL~~LH~vIq~afgw 47 (188)
T 2i1s_A 8 VYHLKLSIKGITPQIWRRIQVPENYTFLDLHKAIQAVMDW 47 (188)
T ss_dssp EEEEEEEETTCSSCEEEEEEEETTCBHHHHHHHHHHHTTC
T ss_pred EEEEEEEECCCCCCeEEEEEECCCCCHHHHHHHHHHHhCC
Confidence 45689999986 799999999999999999999999985
No 19
>1jyo_A SICP; bacterial pathogenesis, infectious disease, virulence factor, type III secretion, chaperone, unfolded; 1.90A {Salmonella typhimurium} SCOP: d.198.1.1
Probab=25.94 E-value=57 Score=24.80 Aligned_cols=49 Identities=12% Similarity=0.277 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEeCCCCeEEecCc
Q 035700 112 YHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYEDKEGDWMMVGDV 161 (179)
Q Consensus 112 Y~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD~eGD~mLVGDv 161 (179)
+++|...|.+--+++... +-+|+..-.-+...-++.+.++++|++.|-+
T Consensus 4 ~e~LL~~lg~~lg~pL~f-Den~~C~Ll~D~~~~Isie~~~~~~~l~~~i 52 (130)
T 1jyo_A 4 HQDIIANIGEKLGLPLTF-DDNNQCLLLLDSDIFTSIEAKDDIWLLNGMI 52 (130)
T ss_dssp HHHHHHHHHHHHTSCCCC-CTTSEEEEEETTTEEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCccc-CCCCcEEEEECCceEEEEEecCCeEEEEEEE
Confidence 578999999988875322 2233322112245778999999999987743
No 20
>1k3e_A CEST; chaperone, secretion, type III, intimin receptor; 2.80A {Escherichia coli} SCOP: d.198.1.1
Probab=24.37 E-value=78 Score=24.84 Aligned_cols=52 Identities=12% Similarity=0.038 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHHhhcccccccccCCCCCCCCCCceEEEEEe-CCCCeEEecC
Q 035700 109 HDGYHDLIRTLDYMFSTNIIWSEMDGSVSAYSETCHVLTYED-KEGDWMMVGD 160 (179)
Q Consensus 109 ~~sY~eL~~~Le~MF~~~~~~~e~~g~~~~~~~~~~vl~YeD-~eGD~mLVGD 160 (179)
+..-++|+++|.+-.+.+..--+-+|+....-...+.+..+. ++++||+-|-
T Consensus 2 ~~~~e~LL~efg~~lGLp~L~fDeng~C~L~IDd~i~i~l~~~~d~~l~L~g~ 54 (156)
T 1k3e_A 2 SSRSELLLEKFAEKIGIGSISFNENRLCSFAIDEIYYISLSDANDEYMMIYGV 54 (156)
T ss_dssp CCHHHHHHHHHHHHHSCCCCCCCTTSCCEEEECCCCEEEEECCSSSEEEEEEE
T ss_pred chHHHHHHHHHHHHcCCCCcccCCCCcEEEEECCeEEEEEEEcCCCcEEEEEE
Confidence 344578999999999986332222443222222356777777 5788887654
No 21
>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown function, uncharacterized protein; 1.50A {Vibrio cholerae o1 biovar eltor str}
Probab=23.81 E-value=33 Score=25.25 Aligned_cols=34 Identities=15% Similarity=0.267 Sum_probs=26.5
Q ss_pred CCceEEEEEeC-CCCeEEecCcChhHHhhccceeE
Q 035700 141 ETCHVLTYEDK-EGDWMMVGDVPWEMFLSTVRRLK 174 (179)
Q Consensus 141 ~~~~vl~YeD~-eGD~mLVGDvPW~~Fv~svKRLr 174 (179)
+..+.+.|.-- ..+|.+|.-+|..++...+++++
T Consensus 204 g~~~~~~~~~~~~~~W~vv~~~p~~~~~~~~~~~~ 238 (240)
T 3c8c_A 204 GKPYAVSFSDVEGEDWYVGVVIDEEIAYAALDELR 238 (240)
T ss_dssp TEEEEEEEEECTTSSEEEEEEECHHHHHHHHHHHH
T ss_pred CEEEEEEEEecCCCCeEEEEEeCHHHHHHHHHHHh
Confidence 34566677654 55899999999999999888765
Done!