BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035702
(202 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 68/123 (55%)
Query: 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNS 138
+ L+LS + G + +G+LS LR + L N GEIPQE+ + LE L L N
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477
Query: 139 FSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNL 198
+G IP+ LS C+NL + + NN+L G+IPK IG L L L L N + +P +G+
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537
Query: 199 SAL 201
+L
Sbjct: 538 RSL 540
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 70/132 (53%), Gaps = 9/132 (6%)
Query: 77 RHQRVTELNLSSQRIGGILSPYVGNLSF-LRYINLADNGFHGEIPQEIGNLLR-----LE 130
+ + + L+LS G L + NLS L ++L+ N F G I + NL + L+
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI---LPNLCQNPKNTLQ 397
Query: 131 KLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQ 190
+L L NN F+G IP LS CS L+ H+ N L G IP +GSL KL+ L L+ N L +
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457
Query: 191 LPDFIGNLSALE 202
+P + + LE
Sbjct: 458 IPQELMYVKTLE 469
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 67/123 (54%), Gaps = 8/123 (6%)
Query: 84 LNLSSQRIGGILSPYVGNL-----SFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNS 138
L+LSS G P + NL + L+ + L +NGF G+IP + N L L L N
Sbjct: 373 LDLSSNNFSG---PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429
Query: 139 FSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNL 198
SGTIP++L S L + N LEG+IP+E+ + L+TL L +N LT ++P + N
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489
Query: 199 SAL 201
+ L
Sbjct: 490 TNL 492
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 67/126 (53%), Gaps = 6/126 (4%)
Query: 75 GHRHQRVTEL------NLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLR 128
G R +++ L N++S+ GG SP N + +++++ N G IP+EIG++
Sbjct: 598 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 657
Query: 129 LEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLT 188
L L L +N SG+IP + L + +NKL+G+IP+ + +L L + L N L+
Sbjct: 658 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717
Query: 189 RQLPDF 194
+P+
Sbjct: 718 GPIPEM 723
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Query: 65 NLCLWTGVTCGHRHQRV------TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGE 118
+L LW + G Q + L L + G + + N + L +I+L++N GE
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505
Query: 119 IPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEI 171
IP+ IG L L L L NNSFSG IP L C +LI+ + N G IP +
Sbjct: 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 10/104 (9%)
Query: 84 LNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTI 143
++LS+ R+ G + ++G L L + L++N F G IP E+G+ L L L N F+GTI
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554
Query: 144 PTNLSRCSNLI---------YFHVGNNKLEGQIPKEIGSLLKLQ 178
P + + S I Y ++ N+ ++ + G+LL+ Q
Sbjct: 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC-HGAGNLLEFQ 597
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 28/157 (17%)
Query: 70 TGVTCGHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRL 129
TG+ + L++S ++ G S + + L+ +N++ N F G IP L L
Sbjct: 214 TGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSL 271
Query: 130 EKLALPNNSFSGTIPTNLS-RCSNLIYFHVGNNKLEGQIPKEIG---------------- 172
+ L+L N F+G IP LS C L + N G +P G
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331
Query: 173 ------SLLK---LQTLALYYNYLTRQLPDFIGNLSA 200
+LLK L+ L L +N + +LP+ + NLSA
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 368
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 11/147 (7%)
Query: 49 QLHDPSGVTSSWNNTINLCLWTGVTCGHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYI 108
++ D S + S N + L G CG + L +S +I G + V L ++
Sbjct: 154 EVLDLSANSISGANVVGWVLSDG--CGE----LKHLAISGNKISGDVD--VSRCVNLEFL 205
Query: 109 NLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIP 168
+++ N F IP +G+ L+ L + N SG +S C+ L ++ +N+ G IP
Sbjct: 206 DVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 264
Query: 169 KEIGSLLKLQTLALYYNYLTRQLPDFI 195
L LQ L+L N T ++PDF+
Sbjct: 265 PL--PLKSLQYLSLAENKFTGEIPDFL 289
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 25/152 (16%)
Query: 43 LLTIKSQLHDPSGVTSSWNNTINLCLWTGVTCGHRHQRVTELNLSSQRIGGILSPY---- 98
L++ K L D + W++ N C + GVTC R +VT ++LSS+ + S
Sbjct: 17 LISFKDVLPD-KNLLPDWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPLNVGFSAVSSSL 73
Query: 99 ----VGNLSFL--RYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIP--TNLSRC 150
FL +IN + +GF L L L NS SG + T+L C
Sbjct: 74 LSLTGLESLFLSNSHINGSVSGFKCSA--------SLTSLDLSRNSLSGPVTTLTSLGSC 125
Query: 151 SNLIYFHVGNNKLEGQIPKEIGSLLKLQTLAL 182
S L + +V +N L+ P ++ LKL +L +
Sbjct: 126 SGLKFLNVSSNTLD--FPGKVSGGLKLNSLEV 155
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 106 RYINLADNGFHGEIPQEIGNLLRLEKLALPN-NSFSGTIPTNL-SRC------------S 151
RY+ + ++G E GNLL + + N S P N+ SR
Sbjct: 574 RYVYIKNDGMKKEC-HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632
Query: 152 NLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201
++++ + N L G IPKEIGS+ L L L +N ++ +PD +G+L L
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 682
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 71/172 (41%), Gaps = 53/172 (30%)
Query: 84 LNLSSQRIGGILSPYV-GNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGT 142
L+L+ + G + ++ G L ++L+ N F+G +P G+ LE LAL +N+FSG
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 143 IP----------------------------TNLSR--------------------CSN-- 152
+P TNLS C N
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393
Query: 153 --LIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202
L ++ NN G+IP + + +L +L L +NYL+ +P +G+LS L
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 68/123 (55%)
Query: 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNS 138
+ L+LS + G + +G+LS LR + L N GEIPQE+ + LE L L N
Sbjct: 415 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 474
Query: 139 FSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNL 198
+G IP+ LS C+NL + + NN+L G+IPK IG L L L L N + +P +G+
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 534
Query: 199 SAL 201
+L
Sbjct: 535 RSL 537
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 70/132 (53%), Gaps = 9/132 (6%)
Query: 77 RHQRVTELNLSSQRIGGILSPYVGNLSF-LRYINLADNGFHGEIPQEIGNLLR-----LE 130
+ + + L+LS G L + NLS L ++L+ N F G I + NL + L+
Sbjct: 338 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI---LPNLCQNPKNTLQ 394
Query: 131 KLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQ 190
+L L NN F+G IP LS CS L+ H+ N L G IP +GSL KL+ L L+ N L +
Sbjct: 395 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 454
Query: 191 LPDFIGNLSALE 202
+P + + LE
Sbjct: 455 IPQELMYVKTLE 466
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 67/123 (54%), Gaps = 8/123 (6%)
Query: 84 LNLSSQRIGGILSPYVGNL-----SFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNS 138
L+LSS G P + NL + L+ + L +NGF G+IP + N L L L N
Sbjct: 370 LDLSSNNFSG---PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 426
Query: 139 FSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNL 198
SGTIP++L S L + N LEG+IP+E+ + L+TL L +N LT ++P + N
Sbjct: 427 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 486
Query: 199 SAL 201
+ L
Sbjct: 487 TNL 489
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 61/110 (55%)
Query: 85 NLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIP 144
N++S+ GG SP N + +++++ N G IP+EIG++ L L L +N SG+IP
Sbjct: 611 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 670
Query: 145 TNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDF 194
+ L + +NKL+G+IP+ + +L L + L N L+ +P+
Sbjct: 671 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 42/73 (57%)
Query: 99 VGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158
+ N + L +I+L++N GEIP+ IG L L L L NNSFSG IP L C +LI+ +
Sbjct: 483 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 542
Query: 159 GNNKLEGQIPKEI 171
N G IP +
Sbjct: 543 NTNLFNGTIPAAM 555
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%)
Query: 84 LNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTI 143
L++S + G + +G++ +L +NL N G IP E+G+L L L L +N G I
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 144 PTNLSRCSNLIYFHVGNNKLEGQIPK 169
P +S + L + NN L G IP+
Sbjct: 694 PQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 10/104 (9%)
Query: 84 LNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTI 143
++LS+ R+ G + ++G L L + L++N F G IP E+G+ L L L N F+GTI
Sbjct: 492 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 551
Query: 144 PTNLSRCSNLI---------YFHVGNNKLEGQIPKEIGSLLKLQ 178
P + + S I Y ++ N+ ++ + G+LL+ Q
Sbjct: 552 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC-HGAGNLLEFQ 594
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 28/157 (17%)
Query: 70 TGVTCGHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRL 129
TG+ + L++S ++ G S + + L+ +N++ N F G IP L L
Sbjct: 211 TGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSL 268
Query: 130 EKLALPNNSFSGTIPTNLS-RCSNLIYFHVGNNKLEGQIPKEIG---------------- 172
+ L+L N F+G IP LS C L + N G +P G
Sbjct: 269 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 328
Query: 173 ------SLLK---LQTLALYYNYLTRQLPDFIGNLSA 200
+LLK L+ L L +N + +LP+ + NLSA
Sbjct: 329 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 365
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 11/147 (7%)
Query: 49 QLHDPSGVTSSWNNTINLCLWTGVTCGHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYI 108
++ D S + S N + L G CG + L +S +I G + V L ++
Sbjct: 151 EVLDLSANSISGANVVGWVLSDG--CGE----LKHLAISGNKISGDVD--VSRCVNLEFL 202
Query: 109 NLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIP 168
+++ N F IP +G+ L+ L + N SG +S C+ L ++ +N+ G IP
Sbjct: 203 DVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 261
Query: 169 KEIGSLLKLQTLALYYNYLTRQLPDFI 195
L LQ L+L N T ++PDF+
Sbjct: 262 PL--PLKSLQYLSLAENKFTGEIPDFL 286
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 25/152 (16%)
Query: 43 LLTIKSQLHDPSGVTSSWNNTINLCLWTGVTCGHRHQRVTELNLSSQRIGGILSPY---- 98
L++ K L D + + W++ N C + GVTC R +VT ++LSS+ + S
Sbjct: 14 LISFKDVLPDKN-LLPDWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPLNVGFSAVSSSL 70
Query: 99 ----VGNLSFL--RYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIP--TNLSRC 150
FL +IN + +GF L L L NS SG + T+L C
Sbjct: 71 LSLTGLESLFLSNSHINGSVSGFKCSA--------SLTSLDLSRNSLSGPVTTLTSLGSC 122
Query: 151 SNLIYFHVGNNKLEGQIPKEIGSLLKLQTLAL 182
S L + +V +N L+ P ++ LKL +L +
Sbjct: 123 SGLKFLNVSSNTLD--FPGKVSGGLKLNSLEV 152
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 106 RYINLADNGFHGEIPQEIGNLLRLEKLALPN-NSFSGTIPTNL-SRC------------S 151
RY+ + ++G E GNLL + + N S P N+ SR
Sbjct: 571 RYVYIKNDGMKKEC-HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 629
Query: 152 NLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201
++++ + N L G IPKEIGS+ L L L +N ++ +PD +G+L L
Sbjct: 630 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 679
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 71/172 (41%), Gaps = 53/172 (30%)
Query: 84 LNLSSQRIGGILSPYV-GNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGT 142
L+L+ + G + ++ G L ++L+ N F+G +P G+ LE LAL +N+FSG
Sbjct: 271 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 143 IP----------------------------TNLSR--------------------CSN-- 152
+P TNLS C N
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 390
Query: 153 --LIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202
L ++ NN G+IP + + +L +L L +NYL+ +P +G+LS L
Sbjct: 391 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 442
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 84/195 (43%), Gaps = 33/195 (16%)
Query: 36 NETDRLALLTIKSQLHDPSGVTSSWNNTINLC--LWTGVTCGHRHQ--RVTELNLSSQR- 90
N D+ ALL IK L +P+ + SSW T + C W GV C Q RV L+LS
Sbjct: 4 NPQDKQALLQIKKDLGNPTTL-SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL 62
Query: 91 --------------------IGGI------LSPYVGNLSFLRYINLADNGFHGEIPQEIG 124
IGGI + P + L+ L Y+ + G IP +
Sbjct: 63 PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122
Query: 125 NLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQT-LALY 183
+ L L N+ SGT+P ++S NL+ N++ G IP GS KL T + +
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182
Query: 184 YNYLTRQLPDFIGNL 198
N LT ++P NL
Sbjct: 183 RNRLTGKIPPTFANL 197
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 61/128 (47%), Gaps = 3/128 (2%)
Query: 75 GHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLAL 134
G + T + +S R+ G + P NL+ L +++L+ N G+ G+ +K+ L
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228
Query: 135 PNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDF 194
NS + + + NL + NN++ G +P+ + L L +L + +N L ++P
Sbjct: 229 AKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287
Query: 195 IGNLSALE 202
GNL +
Sbjct: 288 -GNLQRFD 294
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 2/115 (1%)
Query: 76 HRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALP 135
HR ++ L L+ ++ + + L L + + DN L+ L +L L
Sbjct: 58 HRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117
Query: 136 NNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEI-GSLLKLQTLALYYNYLTR 189
N P + L Y +G N+L+ +PK + L L+ L LY N L R
Sbjct: 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLKR 171
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 136 NNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFI 195
NN + + T+L + L N+LEG++P GS +KL +L L YN +T +F
Sbjct: 315 NNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFC 373
Query: 196 GNLSALE 202
G +E
Sbjct: 374 GFTEQVE 380
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%)
Query: 129 LEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLT 188
++ L L NN + ++L RC NL + +N + SL L+ L L YNYL+
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 189 RQLPDFIGNLSAL 201
+ LS+L
Sbjct: 114 NLSSSWFKPLSSL 126
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%)
Query: 129 LEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLT 188
++ L L NN + ++L RC NL + +N + SL L+ L L YNYL+
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Query: 189 RQLPDFIGNLSAL 201
+ LS+L
Sbjct: 88 NLSSSWFKPLSSL 100
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%)
Query: 119 IPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQ 178
+P+E+ N L + L NN S + S + L+ + N+L P+ L L+
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 179 TLALYYNYLTRQLPDFIGNLSAL 201
L+L+ N ++ +LSAL
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSAL 128
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
Query: 105 LRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLE 164
LR + +D G +P+EI L L L NN S + +L + NNK+
Sbjct: 35 LRVVQCSDLGLKA-VPKEISPDTTL--LDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91
Query: 165 GQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202
K L KLQ L + N+L P+ +L L
Sbjct: 92 KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELR 129
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 12/137 (8%)
Query: 60 WNNTINLCL----WTGVTCGHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGF 115
NN I L L T +T ++TEL LS + + + + L ++ ++L
Sbjct: 68 LNNLIGLELKDNQITDLTPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQI 125
Query: 116 HGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLL 175
P + L L+ L L N + P L+ +NL Y +GNN++ P + +L
Sbjct: 126 TDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQVNDLTP--LANLS 179
Query: 176 KLQTLALYYNYLTRQLP 192
KL TL N ++ P
Sbjct: 180 KLTTLRADDNKISDISP 196
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 45/108 (41%)
Query: 80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSF 139
++T LNL ++ + + +L+ L + LA+N +L +L+KL L N
Sbjct: 60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL 119
Query: 140 SGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYL 187
R + L + N+L+ L LQTL+L N L
Sbjct: 120 KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 45/108 (41%)
Query: 80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSF 139
++T LNL ++ + + +L+ L + LA+N +L +L+KL L N
Sbjct: 60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL 119
Query: 140 SGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYL 187
R + L + N+L+ L LQTL+L N L
Sbjct: 120 KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
>pdb|2WD6|A Chain A, Crystal Structure Of The Variable Domain Of The
Streptococcus Gordonii Surface Protein Sspb
pdb|2WD6|B Chain B, Crystal Structure Of The Variable Domain Of The
Streptococcus Gordonii Surface Protein Sspb
Length = 349
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 57 TSSWNNTINLCLWTGVTCGHRHQRVTELNLSSQRIGGILSPYVGNL 102
TS W+ T + W G G Q N++S + G I + N+
Sbjct: 258 TSEWDTTSSPNNWYGAIVGEITQSEISFNMASSKSGNIWFAFNSNI 303
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,853,855
Number of Sequences: 62578
Number of extensions: 227886
Number of successful extensions: 509
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 431
Number of HSP's gapped (non-prelim): 80
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)