Query 035702
Match_columns 202
No_of_seqs 247 out of 2548
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 05:32:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035702.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035702hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 4.4E-25 9.6E-30 202.1 16.7 166 36-202 27-215 (968)
2 PLN03150 hypothetical protein; 99.8 6.9E-20 1.5E-24 160.4 13.8 156 33-192 367-532 (623)
3 PLN00113 leucine-rich repeat r 99.7 5.7E-17 1.2E-21 148.8 9.5 124 79-202 140-263 (968)
4 KOG0617 Ras suppressor protein 99.5 1.5E-16 3.4E-21 115.5 -3.1 120 79-202 33-153 (264)
5 PLN03150 hypothetical protein; 99.5 2.8E-14 6.1E-19 125.3 8.2 94 104-197 419-512 (623)
6 KOG0617 Ras suppressor protein 99.4 4.1E-15 9E-20 108.1 -4.3 114 82-199 82-196 (264)
7 KOG4194 Membrane glycoprotein 99.2 2.4E-12 5.2E-17 108.7 -0.6 119 79-198 317-439 (873)
8 KOG0444 Cytoskeletal regulator 99.2 6.5E-13 1.4E-17 113.2 -4.0 115 80-198 223-338 (1255)
9 KOG0472 Leucine-rich repeat pr 99.2 8.6E-13 1.9E-17 107.0 -3.4 112 81-198 185-297 (565)
10 PF14580 LRR_9: Leucine-rich r 99.2 3E-11 6.4E-16 89.5 4.6 103 80-188 20-126 (175)
11 KOG0472 Leucine-rich repeat pr 99.2 5.4E-12 1.2E-16 102.5 0.4 106 80-188 389-541 (565)
12 PRK15370 E3 ubiquitin-protein 99.1 2.8E-09 6.1E-14 95.2 13.1 126 29-164 54-254 (754)
13 KOG0444 Cytoskeletal regulator 99.1 6.6E-12 1.4E-16 107.2 -3.5 120 78-201 244-364 (1255)
14 KOG4194 Membrane glycoprotein 99.0 2.4E-10 5.2E-15 96.9 5.2 120 79-201 78-223 (873)
15 PF13855 LRR_8: Leucine rich r 99.0 3.4E-10 7.4E-15 69.4 3.8 57 129-186 3-60 (61)
16 PF13855 LRR_8: Leucine rich r 99.0 2.6E-10 5.7E-15 69.9 3.0 61 103-163 1-61 (61)
17 KOG4237 Extracellular matrix p 99.0 5.1E-11 1.1E-15 96.6 -1.0 121 79-201 67-190 (498)
18 PRK15387 E3 ubiquitin-protein 99.0 6.1E-10 1.3E-14 99.2 5.5 66 128-198 403-468 (788)
19 KOG0532 Leucine-rich repeat (L 99.0 3.8E-11 8.1E-16 101.2 -2.1 114 81-201 123-236 (722)
20 KOG1259 Nischarin, modulator o 98.9 1.3E-10 2.9E-15 91.5 -0.1 81 79-163 284-364 (490)
21 PF08263 LRRNT_2: Leucine rich 98.9 1.7E-09 3.6E-14 61.5 4.3 39 37-75 2-43 (43)
22 KOG0618 Serine/threonine phosp 98.9 1.5E-10 3.2E-15 102.3 -0.2 105 79-186 383-487 (1081)
23 KOG0618 Serine/threonine phosp 98.9 6.9E-11 1.5E-15 104.3 -2.7 106 79-188 359-465 (1081)
24 cd00116 LRR_RI Leucine-rich re 98.9 5.6E-10 1.2E-14 90.2 2.3 109 81-189 110-235 (319)
25 PF14580 LRR_9: Leucine-rich r 98.9 2E-09 4.4E-14 79.8 4.6 100 79-182 42-147 (175)
26 PLN03210 Resistant to P. syrin 98.9 8.7E-09 1.9E-13 96.6 9.2 117 79-201 778-895 (1153)
27 PLN03210 Resistant to P. syrin 98.9 9.6E-09 2.1E-13 96.4 9.2 104 80-186 612-715 (1153)
28 PRK15370 E3 ubiquitin-protein 98.9 7.3E-09 1.6E-13 92.6 8.0 102 79-193 199-300 (754)
29 PRK15387 E3 ubiquitin-protein 98.8 7.1E-09 1.5E-13 92.5 7.0 25 176-201 423-447 (788)
30 cd00116 LRR_RI Leucine-rich re 98.8 1.4E-09 3E-14 87.9 2.2 110 79-188 137-263 (319)
31 KOG0532 Leucine-rich repeat (L 98.7 3.2E-09 7E-14 89.8 -0.2 112 80-197 144-255 (722)
32 COG4886 Leucine-rich repeat (L 98.7 1.3E-08 2.8E-13 85.0 3.2 115 80-199 117-232 (394)
33 COG4886 Leucine-rich repeat (L 98.6 2.1E-08 4.6E-13 83.7 1.8 115 80-199 141-277 (394)
34 KOG4237 Extracellular matrix p 98.6 2E-08 4.4E-13 81.7 1.4 92 97-188 268-359 (498)
35 KOG4658 Apoptotic ATPase [Sign 98.6 3.9E-08 8.5E-13 89.3 3.3 107 79-186 545-653 (889)
36 KOG4579 Leucine-rich repeat (L 98.5 8.7E-09 1.9E-13 72.6 -1.5 111 79-193 53-164 (177)
37 KOG1259 Nischarin, modulator o 98.5 3.6E-08 7.9E-13 78.0 0.2 65 97-164 278-342 (490)
38 PF12799 LRR_4: Leucine Rich r 98.4 2.4E-07 5.1E-12 52.8 2.9 36 128-164 2-37 (44)
39 PF12799 LRR_4: Leucine Rich r 98.4 3.1E-07 6.7E-12 52.3 3.3 36 152-188 2-37 (44)
40 KOG4658 Apoptotic ATPase [Sign 98.4 2.6E-07 5.6E-12 84.1 4.1 121 79-202 523-645 (889)
41 KOG4579 Leucine-rich repeat (L 98.4 3.5E-08 7.5E-13 69.6 -1.3 110 80-194 28-141 (177)
42 KOG1644 U2-associated snRNP A' 98.1 6.9E-06 1.5E-10 61.6 5.3 101 80-184 43-149 (233)
43 KOG1859 Leucine-rich repeat pr 98.0 1.5E-07 3.2E-12 82.1 -4.8 101 81-188 166-267 (1096)
44 KOG0531 Protein phosphatase 1, 98.0 1.3E-06 2.7E-11 73.7 0.5 102 80-187 96-198 (414)
45 KOG3207 Beta-tubulin folding c 97.9 1.1E-06 2.5E-11 72.5 -1.3 83 79-161 146-232 (505)
46 KOG3207 Beta-tubulin folding c 97.9 3.2E-06 6.9E-11 69.9 0.8 109 79-188 197-314 (505)
47 KOG0531 Protein phosphatase 1, 97.9 4.4E-06 9.6E-11 70.4 1.5 105 79-189 72-176 (414)
48 KOG1644 U2-associated snRNP A' 97.7 7.2E-05 1.6E-09 56.2 5.1 102 82-188 22-126 (233)
49 KOG1859 Leucine-rich repeat pr 97.7 9.7E-07 2.1E-11 77.2 -5.7 104 79-188 187-292 (1096)
50 KOG2739 Leucine-rich acidic nu 97.5 7.2E-05 1.6E-09 58.1 3.0 100 80-182 44-150 (260)
51 KOG1909 Ran GTPase-activating 97.4 3.5E-05 7.5E-10 62.2 -0.2 109 79-187 185-310 (382)
52 KOG3665 ZYG-1-like serine/thre 97.3 0.00012 2.7E-09 65.4 2.5 113 79-193 148-268 (699)
53 KOG2739 Leucine-rich acidic nu 97.3 0.00015 3.2E-09 56.4 1.9 90 95-188 35-129 (260)
54 PF00560 LRR_1: Leucine Rich R 97.1 0.00021 4.6E-09 34.1 1.0 22 176-198 1-22 (22)
55 PRK15386 type III secretion pr 97.1 0.0018 3.9E-08 54.3 7.0 31 152-185 157-187 (426)
56 KOG1909 Ran GTPase-activating 97.1 0.00025 5.5E-09 57.3 1.8 110 79-188 92-226 (382)
57 KOG2123 Uncharacterized conser 97.1 3.1E-05 6.7E-10 61.0 -3.6 98 79-181 19-123 (388)
58 PF13306 LRR_5: Leucine rich r 96.7 0.0079 1.7E-07 41.7 6.8 117 79-202 12-129 (129)
59 KOG2982 Uncharacterized conser 96.7 0.00052 1.1E-08 54.8 0.6 83 79-162 71-157 (418)
60 COG5238 RNA1 Ran GTPase-activa 96.7 0.0048 1E-07 48.8 5.6 106 79-188 92-227 (388)
61 KOG3665 ZYG-1-like serine/thre 96.5 0.0016 3.4E-08 58.5 2.3 108 79-188 122-233 (699)
62 PF00560 LRR_1: Leucine Rich R 96.4 0.0013 2.9E-08 31.3 0.9 12 129-140 2-13 (22)
63 KOG2982 Uncharacterized conser 96.3 0.00085 1.8E-08 53.6 -0.2 59 79-137 97-156 (418)
64 KOG0473 Leucine-rich repeat pr 96.2 8.8E-05 1.9E-09 57.1 -6.2 85 77-164 40-124 (326)
65 KOG2120 SCF ubiquitin ligase, 96.0 0.00077 1.7E-08 53.8 -2.1 39 148-186 310-349 (419)
66 PRK15386 type III secretion pr 96.0 0.015 3.2E-07 48.9 5.3 87 79-184 52-141 (426)
67 COG5238 RNA1 Ran GTPase-activa 95.9 0.013 2.7E-07 46.5 4.4 110 79-188 30-170 (388)
68 PF13306 LRR_5: Leucine rich r 95.4 0.078 1.7E-06 36.6 6.5 86 97-185 6-91 (129)
69 PF13504 LRR_7: Leucine rich r 95.4 0.0096 2.1E-07 26.4 1.1 13 176-188 2-14 (17)
70 KOG0473 Leucine-rich repeat pr 95.2 0.00017 3.7E-09 55.6 -7.9 89 97-188 36-124 (326)
71 KOG2123 Uncharacterized conser 94.8 0.0013 2.8E-08 52.1 -4.3 87 102-193 18-106 (388)
72 smart00370 LRR Leucine-rich re 93.9 0.05 1.1E-06 26.7 1.9 18 175-193 2-19 (26)
73 smart00369 LRR_TYP Leucine-ric 93.9 0.05 1.1E-06 26.7 1.9 18 175-193 2-19 (26)
74 smart00370 LRR Leucine-rich re 92.9 0.11 2.3E-06 25.4 2.1 13 128-140 3-15 (26)
75 smart00369 LRR_TYP Leucine-ric 92.9 0.11 2.3E-06 25.4 2.1 13 128-140 3-15 (26)
76 PF13516 LRR_6: Leucine Rich r 92.1 0.03 6.6E-07 26.9 -0.6 18 175-192 2-19 (24)
77 KOG2120 SCF ubiquitin ligase, 90.8 0.01 2.3E-07 47.6 -4.6 85 104-188 186-273 (419)
78 KOG3864 Uncharacterized conser 90.2 0.065 1.4E-06 40.6 -0.6 83 79-161 101-186 (221)
79 smart00364 LRR_BAC Leucine-ric 88.4 0.29 6.2E-06 24.2 1.1 18 175-193 2-19 (26)
80 smart00365 LRR_SD22 Leucine-ri 82.0 1.3 2.9E-05 21.8 1.8 13 128-140 3-15 (26)
81 KOG3864 Uncharacterized conser 78.6 0.35 7.5E-06 36.8 -1.5 81 104-184 102-185 (221)
82 smart00368 LRR_RI Leucine rich 77.8 2 4.4E-05 21.3 1.7 13 128-140 3-15 (28)
83 KOG1947 Leucine rich repeat pr 76.2 0.82 1.8E-05 38.8 -0.1 60 126-185 242-305 (482)
84 KOG3763 mRNA export factor TAP 72.4 2.3 5E-05 37.1 1.7 80 100-181 215-307 (585)
85 KOG1947 Leucine rich repeat pr 70.2 1.7 3.8E-05 36.8 0.5 104 79-182 214-328 (482)
86 KOG3763 mRNA export factor TAP 50.0 9.8 0.00021 33.4 1.5 63 125-190 216-285 (585)
87 KOG4308 LRR-containing protein 43.2 1.2 2.5E-05 38.6 -5.1 38 151-188 262-303 (478)
88 TIGR00864 PCC polycystin catio 37.8 27 0.00058 36.7 2.6 32 109-140 1-32 (2740)
89 smart00367 LRR_CC Leucine-rich 34.4 27 0.00058 16.6 1.1 15 174-188 1-16 (26)
90 TIGR00864 PCC polycystin catio 29.6 35 0.00077 35.9 2.0 32 85-116 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=4.4e-25 Score=202.05 Aligned_cols=166 Identities=35% Similarity=0.649 Sum_probs=125.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCccccceeCCCCCcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcC
Q 035702 36 NETDRLALLTIKSQLHDPSGVTSSWNNTINLCLWTGVTCGHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGF 115 (202)
Q Consensus 36 ~~~~~~~L~~~~~~~~~~~~~~~~W~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l 115 (202)
.++|+.+|++||+++.+|.+.+.+|+...++|.|+||+|+.. ++|+.|+++++++.+.++..+..+++|+.|++++|.+
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~-~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~ 105 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNS-SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQL 105 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCCC-CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCcc
Confidence 558999999999999878777889998889999999999854 6899999999999998888888999999999999998
Q ss_pred cccCchhcc-CCCCCCeEeCCCCcCcc----------------------CcChhccCCCCCcEEEeecccCcccCChhcc
Q 035702 116 HGEIPQEIG-NLLRLEKLALPNNSFSG----------------------TIPTNLSRCSNLIYFHVGNNKLEGQIPKEIG 172 (202)
Q Consensus 116 ~~~~p~~~~-~l~~L~~L~ls~n~l~~----------------------~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~ 172 (202)
+|.+|..+. .+++|++|++++|.+++ .+|..++++++|++|++++|.+.+.+|..+.
T Consensus 106 ~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 185 (968)
T PLN00113 106 SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT 185 (968)
T ss_pred CCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhh
Confidence 888887654 56666666666665554 4555555666666666666666666666666
Q ss_pred CCCCCceeeccccccccccChhccCCCCCC
Q 035702 173 SLLKLQTLALYYNYLTRQLPDFIGNLSALE 202 (202)
Q Consensus 173 ~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~ 202 (202)
++++|++|++++|.+++.+|..++++++|+
T Consensus 186 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 215 (968)
T PLN00113 186 NLTSLEFLTLASNQLVGQIPRELGQMKSLK 215 (968)
T ss_pred hCcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence 666666666666666666666666665553
No 2
>PLN03150 hypothetical protein; Provisional
Probab=99.83 E-value=6.9e-20 Score=160.39 Aligned_cols=156 Identities=31% Similarity=0.535 Sum_probs=134.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC-----ccccceeCCCC----CcEEEEEcCCCCCccccCccccCCC
Q 035702 33 GQTNETDRLALLTIKSQLHDPSGVTSSWNNTINLC-----LWTGVTCGHRH----QRVTELNLSSQRIGGILSPYVGNLS 103 (202)
Q Consensus 33 ~~~~~~~~~~L~~~~~~~~~~~~~~~~W~~~~~~c-----~w~gv~c~~~~----~~v~~L~l~~~~l~~~~~~~l~~l~ 103 (202)
..+..+|..+|+.+|..+..+. ..+|... +| .|.||.|.... ..++.|+|++|.+.|.+|+.+..++
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~--~~~W~g~--~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~ 442 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPL--RFGWNGD--PCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLR 442 (623)
T ss_pred cccCchHHHHHHHHHHhcCCcc--cCCCCCC--CCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCC
Confidence 3467789999999999986543 2478653 44 79999995321 2589999999999999999999999
Q ss_pred CCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCC-CCCceeec
Q 035702 104 FLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSL-LKLQTLAL 182 (202)
Q Consensus 104 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l-~~L~~L~l 182 (202)
+|+.|++++|.+.|.+|..++.+++|+.|++++|.++|.+|+.++++++|++|++++|+++|.+|..+... .++..+++
T Consensus 443 ~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~ 522 (623)
T PLN03150 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNF 522 (623)
T ss_pred CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999988764 46788999
Q ss_pred cccccccccC
Q 035702 183 YYNYLTRQLP 192 (202)
Q Consensus 183 ~~N~l~g~iP 192 (202)
.+|...+..|
T Consensus 523 ~~N~~lc~~p 532 (623)
T PLN03150 523 TDNAGLCGIP 532 (623)
T ss_pred cCCccccCCC
Confidence 9987654454
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.69 E-value=5.7e-17 Score=148.85 Aligned_cols=124 Identities=37% Similarity=0.629 Sum_probs=83.2
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
.+++.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..++++++|++|++++|.+++.+|..++++++|++|++
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence 34556666666666666666666777777777777766666666666777777777777666666666666666777777
Q ss_pred ecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702 159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202 (202)
Q Consensus 159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~ 202 (202)
++|.+++.+|..+.++++|++|++++|.+++.+|..++++++|+
T Consensus 220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 263 (968)
T PLN00113 220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQ 263 (968)
T ss_pred cCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCC
Confidence 66666666666666666666666666666666666666665553
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=1.5e-16 Score=115.46 Aligned_cols=120 Identities=26% Similarity=0.419 Sum_probs=98.7
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
.+++.+.+++|+++- +|+.+..+.+|+.|++.+|+++ .+|..++.+++|+.|+++.|++. .+|..|+.++.|+.||+
T Consensus 33 s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence 678999999999987 6778999999999999999999 88999999999999999999998 88999999999999999
Q ss_pred ecccCcc-cCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702 159 GNNKLEG-QIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202 (202)
Q Consensus 159 ~~n~~~g-~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~ 202 (202)
.+|++.. .+|..|..+..|+.|+++.|.|. .+|..++++++|+
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lq 153 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQ 153 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhccee
Confidence 9988752 45666666666666666666666 6666666666553
No 5
>PLN03150 hypothetical protein; Provisional
Probab=99.52 E-value=2.8e-14 Score=125.27 Aligned_cols=94 Identities=32% Similarity=0.600 Sum_probs=90.5
Q ss_pred CCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeecc
Q 035702 104 FLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALY 183 (202)
Q Consensus 104 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~ 183 (202)
.++.|+|++|.++|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|+.++++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccChhccC
Q 035702 184 YNYLTRQLPDFIGN 197 (202)
Q Consensus 184 ~N~l~g~iP~~~~~ 197 (202)
+|+++|.+|..++.
T Consensus 499 ~N~l~g~iP~~l~~ 512 (623)
T PLN03150 499 GNSLSGRVPAALGG 512 (623)
T ss_pred CCcccccCChHHhh
Confidence 99999999988765
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.41 E-value=4.1e-15 Score=108.08 Aligned_cols=114 Identities=30% Similarity=0.471 Sum_probs=73.1
Q ss_pred EEEEcCCCCCccccCccccCCCCCcEEEccCCcCc-ccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeec
Q 035702 82 TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFH-GEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGN 160 (202)
Q Consensus 82 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~ 160 (202)
+.+++.-|++.. +|..|+.++.|+.||+..|+++ ..+|..|..+..|+.|++++|.+. .+|..++++++|+.|.+..
T Consensus 82 r~lnvgmnrl~~-lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrd 159 (264)
T KOG0617|consen 82 RILNVGMNRLNI-LPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRD 159 (264)
T ss_pred hheecchhhhhc-CccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeecc
Confidence 333333333332 3444455555555555554443 233444444555555555555555 6777888888888888888
Q ss_pred ccCcccCChhccCCCCCceeeccccccccccChhccCCC
Q 035702 161 NKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLS 199 (202)
Q Consensus 161 n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~ 199 (202)
|.+- ++|..++.+.+|+.|++.+|.++ .+|.+++++.
T Consensus 160 ndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~ 196 (264)
T KOG0617|consen 160 NDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLD 196 (264)
T ss_pred Cchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhh
Confidence 8887 78888888888888888888888 7787777653
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.19 E-value=2.4e-12 Score=108.74 Aligned_cols=119 Identities=28% Similarity=0.319 Sum_probs=92.5
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcC---hhccCCCCCcE
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIP---TNLSRCSNLIY 155 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p---~~l~~l~~L~~ 155 (202)
.++++|+|+.|+++..-+.+|..+..|++|+|+.|.++-.-...|..+++|+.|||++|.+++.+- ..+.+|++|+.
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk 396 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK 396 (873)
T ss_pred ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh
Confidence 456777777777776555667777777777777777764444566778899999999999887654 35678999999
Q ss_pred EEeecccCcccCC-hhccCCCCCceeeccccccccccChhccCC
Q 035702 156 FHVGNNKLEGQIP-KEIGSLLKLQTLALYYNYLTRQLPDFIGNL 198 (202)
Q Consensus 156 L~l~~n~~~g~~p-~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l 198 (202)
|++.+|++. .+| ..|..++.|++|||.+|.+...-|..|..+
T Consensus 397 L~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 397 LRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM 439 (873)
T ss_pred eeecCceee-ecchhhhccCcccceecCCCCcceeecccccccc
Confidence 999999998 666 478899999999999999987777777665
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.19 E-value=6.5e-13 Score=113.17 Aligned_cols=115 Identities=26% Similarity=0.399 Sum_probs=52.1
Q ss_pred cEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEee
Q 035702 80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVG 159 (202)
Q Consensus 80 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~ 159 (202)
++..++++.|++.. +|+++.++.+|+.|+|++|.++ .+.-..+...+|++|++|+|+++ .+|..+.++++|+.|.+.
T Consensus 223 NL~dvDlS~N~Lp~-vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n 299 (1255)
T KOG0444|consen 223 NLRDVDLSENNLPI-VPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYAN 299 (1255)
T ss_pred hhhhccccccCCCc-chHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhc
Confidence 34445555555544 4555555555555555555554 33333333344444444444444 444444444444444444
Q ss_pred cccCc-ccCChhccCCCCCceeeccccccccccChhccCC
Q 035702 160 NNKLE-GQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNL 198 (202)
Q Consensus 160 ~n~~~-g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l 198 (202)
+|+++ ..+|+.++++.+|+.+..++|++. .+|..++.|
T Consensus 300 ~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC 338 (1255)
T KOG0444|consen 300 NNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRC 338 (1255)
T ss_pred cCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhh
Confidence 44432 123444444444444444444443 344444433
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.18 E-value=8.6e-13 Score=107.04 Aligned_cols=112 Identities=29% Similarity=0.456 Sum_probs=78.5
Q ss_pred EEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhc-cCCCCCcEEEee
Q 035702 81 VTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNL-SRCSNLIYFHVG 159 (202)
Q Consensus 81 v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l-~~l~~L~~L~l~ 159 (202)
+++++.-.|-++. +|+.++.+.+|+.|+++.|.+. .+| .|+.+..|..++++.|.++ .+|... +.++++.+||+.
T Consensus 185 L~~ld~~~N~L~t-lP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLR 260 (565)
T KOG0472|consen 185 LKHLDCNSNLLET-LPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLR 260 (565)
T ss_pred HHhcccchhhhhc-CChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecc
Confidence 3344443333332 5555666666666666666655 455 4555666666666666665 566555 478899999999
Q ss_pred cccCcccCChhccCCCCCceeeccccccccccChhccCC
Q 035702 160 NNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNL 198 (202)
Q Consensus 160 ~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l 198 (202)
.|+++ ++|+.+.-+.+|+.||+++|.++ .+|-+++++
T Consensus 261 dNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl 297 (565)
T KOG0472|consen 261 DNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL 297 (565)
T ss_pred ccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc
Confidence 99999 88999999999999999999998 778888877
No 10
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.17 E-value=3e-11 Score=89.54 Aligned_cols=103 Identities=32% Similarity=0.463 Sum_probs=41.2
Q ss_pred cEEEEEcCCCCCccccCcccc-CCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhc-cCCCCCcEEE
Q 035702 80 RVTELNLSSQRIGGILSPYVG-NLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNL-SRCSNLIYFH 157 (202)
Q Consensus 80 ~v~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l-~~l~~L~~L~ 157 (202)
+.++|+|++|.++.. +.+. .+.+|+.|++++|.++ .++ .+..++.|++|++++|.++ .+.+.+ ..+++|++|+
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence 468899999998863 3455 5788999999999998 444 4778899999999999998 565545 4689999999
Q ss_pred eecccCcccCC--hhccCCCCCceeeccccccc
Q 035702 158 VGNNKLEGQIP--KEIGSLLKLQTLALYYNYLT 188 (202)
Q Consensus 158 l~~n~~~g~~p--~~~~~l~~L~~L~l~~N~l~ 188 (202)
+++|++.. +- ..+..+++|+.|++.+|.++
T Consensus 95 L~~N~I~~-l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 95 LSNNKISD-LNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -TTS---S-CCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCcCCC-hHHhHHHHcCCCcceeeccCCccc
Confidence 99999873 22 35678899999999999887
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.16 E-value=5.4e-12 Score=102.47 Aligned_cols=106 Identities=31% Similarity=0.535 Sum_probs=84.1
Q ss_pred cEEEEEcCCCCCcc-----------------------ccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCC
Q 035702 80 RVTELNLSSQRIGG-----------------------ILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPN 136 (202)
Q Consensus 80 ~v~~L~l~~~~l~~-----------------------~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~ 136 (202)
-|+.+++++|++.. .+|..+..+++|..|++++|.+. .+|..++.+..||.++++.
T Consensus 389 ~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~ 467 (565)
T KOG0472|consen 389 IVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSF 467 (565)
T ss_pred ceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccc
Confidence 47888888877643 23445678889999999999988 8899899998999999998
Q ss_pred CcCccCcCh------------------------hccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccccc
Q 035702 137 NSFSGTIPT------------------------NLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLT 188 (202)
Q Consensus 137 n~l~~~~p~------------------------~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~ 188 (202)
|+|. .+|. .+.+|.+|.+||+.+|.+. .+|+.++++.+|++|++.+|+|.
T Consensus 468 NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 468 NRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 8776 3332 3667778888888888887 77888888888888888888886
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.06 E-value=2.8e-09 Score=95.17 Aligned_cols=126 Identities=15% Similarity=0.260 Sum_probs=74.1
Q ss_pred CcccCCCCHHHHHHHHHHHHhCCCCCCCCC----CCCCCCCCCcccc----------------ceeCCC-----------
Q 035702 29 GFSVGQTNETDRLALLTIKSQLHDPSGVTS----SWNNTINLCLWTG----------------VTCGHR----------- 77 (202)
Q Consensus 29 ~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~----~W~~~~~~c~w~g----------------v~c~~~----------- 77 (202)
+.+...+...|...++++...+..|. +.. .|++.+++|.-.. |.|.+.
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~l~~p~-~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~~~vt~l~~~g~~ 132 (754)
T PRK15370 54 CHPPETASPEEIKSKFECLRMLAFPA-YADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGGGKSVTYTRVTESE 132 (754)
T ss_pred hCCCCCCCHHHHHHHHHHHHHhcCCc-hhhccccccCCCCcccccCCcchhhheeeecCCceEEecCCCccccccccccc
Confidence 34556678889999999888876553 444 4988888885433 455310
Q ss_pred --------------------------------------------CCcEEEEEcCCCCCccccCccccCCCCCcEEEccCC
Q 035702 78 --------------------------------------------HQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADN 113 (202)
Q Consensus 78 --------------------------------------------~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n 113 (202)
..+.+.+++++++++. +|..+. ++|+.|++++|
T Consensus 133 ~~~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N 209 (754)
T PRK15370 133 QASSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLTT-IPACIP--EQITTLILDNN 209 (754)
T ss_pred ccccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcCc-CCcccc--cCCcEEEecCC
Confidence 0234567777766665 454443 45777777777
Q ss_pred cCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCc
Q 035702 114 GFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLE 164 (202)
Q Consensus 114 ~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~ 164 (202)
.++ .+|..+. ++|++|++++|.++ .+|..+. ++|+.|++++|.++
T Consensus 210 ~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~ 254 (754)
T PRK15370 210 ELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT 254 (754)
T ss_pred CCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC
Confidence 776 5555433 45666666666665 4554332 23444444444444
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.06 E-value=6.6e-12 Score=107.17 Aligned_cols=120 Identities=34% Similarity=0.468 Sum_probs=106.3
Q ss_pred CCcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCcc-CcChhccCCCCCcEE
Q 035702 78 HQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG-TIPTNLSRCSNLIYF 156 (202)
Q Consensus 78 ~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~-~~p~~l~~l~~L~~L 156 (202)
-..++.|+|++|.++. +.-......+|+.|+++.|+++ .+|+.+..++.|+.|++.+|+++. -+|..++++..|+.+
T Consensus 244 l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf 321 (1255)
T KOG0444|consen 244 LRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVF 321 (1255)
T ss_pred hhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHH
Confidence 3678899999999987 5566788899999999999999 899999999999999999998763 479999999999999
Q ss_pred EeecccCcccCChhccCCCCCceeeccccccccccChhccCCCCC
Q 035702 157 HVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201 (202)
Q Consensus 157 ~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L 201 (202)
...+|.+. -+|+.++++++|+.|.|+.|.+. ++|..+.-++.|
T Consensus 322 ~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l 364 (1255)
T KOG0444|consen 322 HAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDL 364 (1255)
T ss_pred Hhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCc
Confidence 99999998 88999999999999999999987 889887766654
No 14
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.04 E-value=2.4e-10 Score=96.91 Aligned_cols=120 Identities=28% Similarity=0.370 Sum_probs=70.1
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchh------------------------ccCCCCCCeEeC
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQE------------------------IGNLLRLEKLAL 134 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~------------------------~~~l~~L~~L~l 134 (202)
..++.|++++|.+...-+..|.++++|+++++..|.++ .+|.. +..++.|+.|||
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 34566777777776655555666666666666666665 55543 344455555566
Q ss_pred CCCcCccCcC-hhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccccccccC-hhccCCCCC
Q 035702 135 PNNSFSGTIP-TNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLP-DFIGNLSAL 201 (202)
Q Consensus 135 s~n~l~~~~p-~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP-~~~~~l~~L 201 (202)
+.|.++ .+| ..+..=.++++|+|++|.|+..-...|..+.+|..|.|+.|+++ .+| ..|.+++.|
T Consensus 157 SrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L 223 (873)
T KOG4194|consen 157 SRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKL 223 (873)
T ss_pred hhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchh
Confidence 666555 344 23333356666666666666332334566667777777777777 444 444445554
No 15
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.01 E-value=3.4e-10 Score=69.42 Aligned_cols=57 Identities=35% Similarity=0.481 Sum_probs=23.5
Q ss_pred CCeEeCCCCcCccCcC-hhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccc
Q 035702 129 LEKLALPNNSFSGTIP-TNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNY 186 (202)
Q Consensus 129 L~~L~ls~n~l~~~~p-~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~ 186 (202)
|++|++++|+++ .+| ..+.++++|++|++++|.++...|..|..+++|++|++++|+
T Consensus 3 L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 3 LESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp ESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 444444444444 222 233444444444444444442222334444444444444443
No 16
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.00 E-value=2.6e-10 Score=69.91 Aligned_cols=61 Identities=33% Similarity=0.505 Sum_probs=54.7
Q ss_pred CCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccC
Q 035702 103 SFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKL 163 (202)
Q Consensus 103 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~ 163 (202)
++|++|++++|.++...+..|..+++|++|++++|.++..-|..+.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5789999999999955567889999999999999999966667899999999999999975
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.98 E-value=5.1e-11 Score=96.57 Aligned_cols=121 Identities=22% Similarity=0.294 Sum_probs=102.6
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCC-CcCccCcC-hhccCCCCCcEE
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPN-NSFSGTIP-TNLSRCSNLIYF 156 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~-n~l~~~~p-~~l~~l~~L~~L 156 (202)
...++|+|..|+|+...+..|..+.+|+.|||++|.|+..-|+.|.+++++..|-+.+ |+|+ .+| ..|++|.+++.|
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL 145 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence 5678999999999997788899999999999999999988899999999988876655 9999 566 678999999999
Q ss_pred EeecccCcccCChhccCCCCCceeeccccccccccCh-hccCCCCC
Q 035702 157 HVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPD-FIGNLSAL 201 (202)
Q Consensus 157 ~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~-~~~~l~~L 201 (202)
.+.-|++.-...+.+..+++|..|.+..|.+. .++. .|..+.++
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i 190 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAI 190 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhcc
Confidence 99999998444567889999999999999987 6665 55555443
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.98 E-value=6.1e-10 Score=99.24 Aligned_cols=66 Identities=23% Similarity=0.323 Sum_probs=45.0
Q ss_pred CCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccccccccChhccCC
Q 035702 128 RLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNL 198 (202)
Q Consensus 128 ~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l 198 (202)
+|+.|++++|.++ .+|.. ..+|+.|++++|+++ .+|..+.++++|+.+++++|+|+|..|..+.++
T Consensus 403 ~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 403 ELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred CCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 4555555555555 34432 235666777777777 678888888888888998888888877766443
No 19
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.98 E-value=3.8e-11 Score=101.23 Aligned_cols=114 Identities=30% Similarity=0.465 Sum_probs=61.5
Q ss_pred EEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeec
Q 035702 81 VTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGN 160 (202)
Q Consensus 81 v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~ 160 (202)
++.++++.|.+.- +|..+..++ |+.|-+++|+++ .+|+.++.+.+|..||.+.|.+. .+|..++++.+|+.|++..
T Consensus 123 lt~l~ls~NqlS~-lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrR 198 (722)
T KOG0532|consen 123 LTFLDLSSNQLSH-LPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRR 198 (722)
T ss_pred HHHhhhccchhhc-CChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhh
Confidence 4445555555544 444444333 555555555555 55555555555555565555555 5555555555555555555
Q ss_pred ccCcccCChhccCCCCCceeeccccccccccChhccCCCCC
Q 035702 161 NKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201 (202)
Q Consensus 161 n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L 201 (202)
|++. .+|+.+..+ .|..||++.|+++ .||..|.+|+.|
T Consensus 199 n~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~L 236 (722)
T KOG0532|consen 199 NHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHL 236 (722)
T ss_pred hhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhh
Confidence 5555 445555433 2555555555555 555555555544
No 20
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.94 E-value=1.3e-10 Score=91.52 Aligned_cols=81 Identities=25% Similarity=0.304 Sum_probs=50.4
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
..++++||++|.++. +.++..-++.++.|+++.|.+. .+. .+..+++|+.|||++|.++ .+-.+-.++-++++|.|
T Consensus 284 q~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchhh-hhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 556777777777765 5666667777777777777776 332 2666777777777777766 33333334444444444
Q ss_pred ecccC
Q 035702 159 GNNKL 163 (202)
Q Consensus 159 ~~n~~ 163 (202)
++|.+
T Consensus 360 a~N~i 364 (490)
T KOG1259|consen 360 AQNKI 364 (490)
T ss_pred hhhhH
Confidence 44443
No 21
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.93 E-value=1.7e-09 Score=61.48 Aligned_cols=39 Identities=56% Similarity=1.049 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhCC-CCCCCCCCCCCC--CCCCccccceeC
Q 035702 37 ETDRLALLTIKSQLH-DPSGVTSSWNNT--INLCLWTGVTCG 75 (202)
Q Consensus 37 ~~~~~~L~~~~~~~~-~~~~~~~~W~~~--~~~c~w~gv~c~ 75 (202)
++|+++|++||.++. ++.+.+.+|+.. .++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 579999999999998 567889999987 799999999995
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.93 E-value=1.5e-10 Score=102.27 Aligned_cols=105 Identities=25% Similarity=0.313 Sum_probs=80.0
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
.+++.|+|++|++.......+.+++.|++|++++|.++ .+|+.+..++.|++|...+|.+. .+| .+..++.|+.+|+
T Consensus 383 ~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDl 459 (1081)
T KOG0618|consen 383 KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDL 459 (1081)
T ss_pred cceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEec
Confidence 57888888888887744456778888888888888888 77888888888888888888887 777 6778888888888
Q ss_pred ecccCcccCChhccCCCCCceeeccccc
Q 035702 159 GNNKLEGQIPKEIGSLLKLQTLALYYNY 186 (202)
Q Consensus 159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~ 186 (202)
+.|+++...-+.....++|++||++||.
T Consensus 460 S~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 460 SCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred ccchhhhhhhhhhCCCcccceeeccCCc
Confidence 8888863322222233788888888885
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.92 E-value=6.9e-11 Score=104.32 Aligned_cols=106 Identities=26% Similarity=0.441 Sum_probs=97.5
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCch-hccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEE
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQ-EIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFH 157 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ 157 (202)
..++.|++.+|.++...-+.+..+.+|+.|++++|.+. .+|+ .+.++..|+.|+||+|+++ .+|..+.++..|++|.
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ 436 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLR 436 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHh
Confidence 45788899999999988888999999999999999998 6665 5778999999999999999 9999999999999999
Q ss_pred eecccCcccCChhccCCCCCceeeccccccc
Q 035702 158 VGNNKLEGQIPKEIGSLLKLQTLALYYNYLT 188 (202)
Q Consensus 158 l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~ 188 (202)
..+|++. .+| .+..+++|+.+|++.|+++
T Consensus 437 ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 437 AHSNQLL-SFP-ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred hcCCcee-ech-hhhhcCcceEEecccchhh
Confidence 9999999 788 7899999999999999987
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.90 E-value=5.6e-10 Score=90.16 Aligned_cols=109 Identities=27% Similarity=0.400 Sum_probs=59.7
Q ss_pred EEEEEcCCCCCcc----ccCccccCC-CCCcEEEccCCcCccc----CchhccCCCCCCeEeCCCCcCccC----cChhc
Q 035702 81 VTELNLSSQRIGG----ILSPYVGNL-SFLRYINLADNGFHGE----IPQEIGNLLRLEKLALPNNSFSGT----IPTNL 147 (202)
Q Consensus 81 v~~L~l~~~~l~~----~~~~~l~~l-~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~----~p~~l 147 (202)
+++|++++|.+.+ .+...+..+ ++|+.|++++|.+++. ++..+..+++|++|++++|.+++. ++..+
T Consensus 110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l 189 (319)
T cd00116 110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGL 189 (319)
T ss_pred ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHH
Confidence 5666666665552 122233444 5666666666666532 222344455666666666666532 23334
Q ss_pred cCCCCCcEEEeecccCccc----CChhccCCCCCceeecccccccc
Q 035702 148 SRCSNLIYFHVGNNKLEGQ----IPKEIGSLLKLQTLALYYNYLTR 189 (202)
Q Consensus 148 ~~l~~L~~L~l~~n~~~g~----~p~~~~~l~~L~~L~l~~N~l~g 189 (202)
..+++|++|++++|.+++. ++..+..+++|++|++++|.+++
T Consensus 190 ~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 190 KANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred HhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence 4455677777777766532 22334556667777777776664
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.89 E-value=2e-09 Score=79.77 Aligned_cols=100 Identities=25% Similarity=0.296 Sum_probs=51.1
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhc-cCCCCCCeEeCCCCcCccC-cChhccCCCCCcEE
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEI-GNLLRLEKLALPNNSFSGT-IPTNLSRCSNLIYF 156 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~ls~n~l~~~-~p~~l~~l~~L~~L 156 (202)
.+++.|++++|.++.. +.+..++.|+.|++++|.++ .+.+.+ ..+++|+.|++++|++... .-..+..+++|+.|
T Consensus 42 ~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 42 DKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred cCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence 5789999999999873 34888999999999999999 555444 4689999999999999842 12567789999999
Q ss_pred EeecccCcccCCh----hccCCCCCceeec
Q 035702 157 HVGNNKLEGQIPK----EIGSLLKLQTLAL 182 (202)
Q Consensus 157 ~l~~n~~~g~~p~----~~~~l~~L~~L~l 182 (202)
++.+|.++.. +. .+..+|+|+.||-
T Consensus 119 ~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 119 SLEGNPVCEK-KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp E-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred eccCCcccch-hhHHHHHHHHcChhheeCC
Confidence 9999999843 33 3567899999984
No 26
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.87 E-value=8.7e-09 Score=96.65 Aligned_cols=117 Identities=26% Similarity=0.242 Sum_probs=89.8
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
..++.|++++|...+.+|..+..+++|+.|++++|..-+.+|..+ .+++|+.|++++|..-..+|.. ..+|+.|++
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~L 853 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNL 853 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeEC
Confidence 467888888887777788889999999999999876555777765 6888888888887554455543 357888888
Q ss_pred ecccCcccCChhccCCCCCceeeccc-cccccccChhccCCCCC
Q 035702 159 GNNKLEGQIPKEIGSLLKLQTLALYY-NYLTRQLPDFIGNLSAL 201 (202)
Q Consensus 159 ~~n~~~g~~p~~~~~l~~L~~L~l~~-N~l~g~iP~~~~~l~~L 201 (202)
++|.++ .+|..+..+++|+.|++++ |++. .+|..+..+++|
T Consensus 854 s~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L 895 (1153)
T PLN03210 854 SRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHL 895 (1153)
T ss_pred CCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCC
Confidence 888888 6888888888999998887 4555 577666665554
No 27
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.86 E-value=9.6e-09 Score=96.38 Aligned_cols=104 Identities=23% Similarity=0.242 Sum_probs=52.2
Q ss_pred cEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEee
Q 035702 80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVG 159 (202)
Q Consensus 80 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~ 159 (202)
.++.|++.++.+.. ++..+..+++|+.++++++...+.+|. ++.+++|+.|++++|.....+|..+.++++|+.|+++
T Consensus 612 ~L~~L~L~~s~l~~-L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 612 NLVKLQMQGSKLEK-LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred CCcEEECcCccccc-cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 34455555555443 344445555555555555443334443 4555555555555554334555555555556666655
Q ss_pred cccCcccCChhccCCCCCceeeccccc
Q 035702 160 NNKLEGQIPKEIGSLLKLQTLALYYNY 186 (202)
Q Consensus 160 ~n~~~g~~p~~~~~l~~L~~L~l~~N~ 186 (202)
+|...+.+|..+ ++++|+.|++++|.
T Consensus 690 ~c~~L~~Lp~~i-~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 690 RCENLEILPTGI-NLKSLYRLNLSGCS 715 (1153)
T ss_pred CCCCcCccCCcC-CCCCCCEEeCCCCC
Confidence 544333444433 44445555544443
No 28
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.86 E-value=7.3e-09 Score=92.56 Aligned_cols=102 Identities=22% Similarity=0.395 Sum_probs=71.3
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
..++.|++++|.++. +|..+. .+|++|++++|.++ .+|..+. .+|+.|++++|.+. .+|..+. ++|+.|++
T Consensus 199 ~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDL 269 (754)
T ss_pred cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence 468889999998886 565443 57888888888887 5666543 46777888888777 6676553 46777777
Q ss_pred ecccCcccCChhccCCCCCceeeccccccccccCh
Q 035702 159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPD 193 (202)
Q Consensus 159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~ 193 (202)
++|+++ .+|..+. ++|+.|++++|+++ .+|.
T Consensus 270 s~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~ 300 (754)
T PRK15370 270 FHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPA 300 (754)
T ss_pred cCCccC-ccccccC--CCCcEEECCCCccc-cCcc
Confidence 777777 5665443 36777777777776 4443
No 29
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.84 E-value=7.1e-09 Score=92.53 Aligned_cols=25 Identities=40% Similarity=0.551 Sum_probs=16.2
Q ss_pred CCceeeccccccccccChhccCCCCC
Q 035702 176 KLQTLALYYNYLTRQLPDFIGNLSAL 201 (202)
Q Consensus 176 ~L~~L~l~~N~l~g~iP~~~~~l~~L 201 (202)
+|+.|++++|+++ .+|..++++++|
T Consensus 423 ~L~~L~Ls~NqLt-~LP~sl~~L~~L 447 (788)
T PRK15387 423 GLLSLSVYRNQLT-RLPESLIHLSSE 447 (788)
T ss_pred hhhhhhhccCccc-ccChHHhhccCC
Confidence 4556666666666 667777666655
No 30
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.83 E-value=1.4e-09 Score=87.88 Aligned_cols=110 Identities=25% Similarity=0.360 Sum_probs=62.0
Q ss_pred CcEEEEEcCCCCCccc----cCccccCCCCCcEEEccCCcCccc----CchhccCCCCCCeEeCCCCcCccC----cChh
Q 035702 79 QRVTELNLSSQRIGGI----LSPYVGNLSFLRYINLADNGFHGE----IPQEIGNLLRLEKLALPNNSFSGT----IPTN 146 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~----~p~~ 146 (202)
.+++.+++++|.+++. +...+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++. ++..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 4567777777777632 223455556677777777776632 223344455677777777766532 2334
Q ss_pred ccCCCCCcEEEeecccCcccCChhcc-----CCCCCceeeccccccc
Q 035702 147 LSRCSNLIYFHVGNNKLEGQIPKEIG-----SLLKLQTLALYYNYLT 188 (202)
Q Consensus 147 l~~l~~L~~L~l~~n~~~g~~p~~~~-----~l~~L~~L~l~~N~l~ 188 (202)
+..+++|++|++++|.+++.....+. ..+.|+.|++++|.++
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 45566677777777666532111111 1256666666666664
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.68 E-value=3.2e-09 Score=89.81 Aligned_cols=112 Identities=25% Similarity=0.404 Sum_probs=101.3
Q ss_pred cEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEee
Q 035702 80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVG 159 (202)
Q Consensus 80 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~ 159 (202)
.++.+-+++|+++. +|+.++.+..|..||.+.|.+. .+|..++++.+|+.|.+.+|.+. .+|+.+.. -.|..||++
T Consensus 144 pLkvli~sNNkl~~-lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfS 219 (722)
T KOG0532|consen 144 PLKVLIVSNNKLTS-LPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFS 219 (722)
T ss_pred cceeEEEecCcccc-CCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-Cceeeeecc
Confidence 47888899999887 7888999999999999999998 89999999999999999999999 88988884 478999999
Q ss_pred cccCcccCChhccCCCCCceeeccccccccccChhccC
Q 035702 160 NNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGN 197 (202)
Q Consensus 160 ~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~ 197 (202)
.|+++ .+|-.|.+|..|++|-|.+|.+. ..|..++.
T Consensus 220 cNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~ 255 (722)
T KOG0532|consen 220 CNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICE 255 (722)
T ss_pred cCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHh
Confidence 99999 89999999999999999999998 77777664
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.67 E-value=1.3e-08 Score=85.04 Aligned_cols=115 Identities=33% Similarity=0.510 Sum_probs=68.5
Q ss_pred cEEEEEcCCCCCccccCccccCCC-CCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 80 RVTELNLSSQRIGGILSPYVGNLS-FLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 80 ~v~~L~l~~~~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
.++.+++.++.++. +++....+. +|+.|++++|.+. .+|..+..+++|+.|+++.|.++ .+|...+.++.|+.|++
T Consensus 117 ~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 117 NLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL 193 (394)
T ss_pred ceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence 45666666666665 444445453 6677777777666 55555666667777777777666 55655556666666666
Q ss_pred ecccCcccCChhccCCCCCceeeccccccccccChhccCCC
Q 035702 159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLS 199 (202)
Q Consensus 159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~ 199 (202)
++|+++ .+|........|+++.+++|... .++..+.+++
T Consensus 194 s~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~ 232 (394)
T COG4886 194 SGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLK 232 (394)
T ss_pred cCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcc
Confidence 666666 55555444445666666666432 3344344433
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.57 E-value=2.1e-08 Score=83.68 Aligned_cols=115 Identities=30% Similarity=0.524 Sum_probs=81.7
Q ss_pred cEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEee
Q 035702 80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVG 159 (202)
Q Consensus 80 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~ 159 (202)
+++.+++++|.+.. ++..+..++.|+.|++++|.++ .+|...+..+.|+.|++++|.++ .+|........|+++.++
T Consensus 141 nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 141 NLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS 217 (394)
T ss_pred hcccccccccchhh-hhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhc
Confidence 78999999999887 5556889999999999999998 77776667888999999999988 777765555567777777
Q ss_pred cccCcc----------------------cCChhccCCCCCceeeccccccccccChhccCCC
Q 035702 160 NNKLEG----------------------QIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLS 199 (202)
Q Consensus 160 ~n~~~g----------------------~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~ 199 (202)
+|.+.. .++..+..++++++|++++|.++ .++. ++.+.
T Consensus 218 ~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~ 277 (394)
T COG4886 218 NNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS-SISS-LGSLT 277 (394)
T ss_pred CCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccc-cccc-ccccC
Confidence 774220 12344455555666666666665 4443 44333
No 34
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.56 E-value=2e-08 Score=81.72 Aligned_cols=92 Identities=22% Similarity=0.227 Sum_probs=79.3
Q ss_pred ccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCC
Q 035702 97 PYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLK 176 (202)
Q Consensus 97 ~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~ 176 (202)
..|.++++|++|++++|.+++.-+..|..+.+++.|+|.+|++...-..-|.++..|++|+|.+|+|+-.-|-.|..+..
T Consensus 268 ~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~ 347 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS 347 (498)
T ss_pred HHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccce
Confidence 35888999999999999999888888999999999999999998555566788999999999999998666778888889
Q ss_pred Cceeeccccccc
Q 035702 177 LQTLALYYNYLT 188 (202)
Q Consensus 177 L~~L~l~~N~l~ 188 (202)
|.+|++-.|.+.
T Consensus 348 l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 348 LSTLNLLSNPFN 359 (498)
T ss_pred eeeeehccCccc
Confidence 999999888764
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.56 E-value=3.9e-08 Score=89.29 Aligned_cols=107 Identities=25% Similarity=0.400 Sum_probs=81.2
Q ss_pred CcEEEEEcCCCC--CccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEE
Q 035702 79 QRVTELNLSSQR--IGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYF 156 (202)
Q Consensus 79 ~~v~~L~l~~~~--l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L 156 (202)
..+++|-+.+|. +.....+.|..++.|+.||+++|.--+.+|..++.+-+|++|+++++.++ .+|..++++.+|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 346677666665 33333345777888888888887766688888888888888888888888 888888888888888
Q ss_pred EeecccCcccCChhccCCCCCceeeccccc
Q 035702 157 HVGNNKLEGQIPKEIGSLLKLQTLALYYNY 186 (202)
Q Consensus 157 ~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~ 186 (202)
|+..+.....+|.....+.+|++|.+....
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccc
Confidence 888887665566666678888888876543
No 36
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.52 E-value=8.7e-09 Score=72.58 Aligned_cols=111 Identities=17% Similarity=0.184 Sum_probs=76.7
Q ss_pred CcEEEEEcCCCCCccccCccc-cCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEE
Q 035702 79 QRVTELNLSSQRIGGILSPYV-GNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFH 157 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ 157 (202)
.+++.+++++|.+.. +|+.| ..++.++.+++++|.++ .+|..+..++.|+.++++.|.+. ..|.-+..+.++..|+
T Consensus 53 ~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 53 YELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred ceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 567778888888776 45444 34557888888888887 77777888888888888888887 7777777788888888
Q ss_pred eecccCcccCChhccCCCCCceeeccccccccccCh
Q 035702 158 VGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPD 193 (202)
Q Consensus 158 l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~ 193 (202)
..+|.+. .+|-.+..-...-..++.++.+.+.-|.
T Consensus 130 s~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 130 SPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKK 164 (177)
T ss_pred CCCCccc-cCcHHHhccccHHHHHhcCCcccccCcc
Confidence 8877776 5665533333333444556666655443
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.45 E-value=3.6e-08 Score=78.01 Aligned_cols=65 Identities=22% Similarity=0.289 Sum_probs=55.7
Q ss_pred ccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCc
Q 035702 97 PYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLE 164 (202)
Q Consensus 97 ~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~ 164 (202)
..+..+..|+++|+++|.++ .+.++..-+|.++.|+++.|.+. .+- .+..+++|+.|||++|.++
T Consensus 278 ~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 278 VSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA 342 (490)
T ss_pred EecchHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH
Confidence 34566778999999999999 77888888999999999999998 443 4889999999999999876
No 38
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.42 E-value=2.4e-07 Score=52.76 Aligned_cols=36 Identities=36% Similarity=0.583 Sum_probs=19.0
Q ss_pred CCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCc
Q 035702 128 RLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLE 164 (202)
Q Consensus 128 ~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~ 164 (202)
+|++|++++|.++ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 45555555555555555555554
No 39
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.41 E-value=3.1e-07 Score=52.26 Aligned_cols=36 Identities=33% Similarity=0.531 Sum_probs=18.8
Q ss_pred CCcEEEeecccCcccCChhccCCCCCceeeccccccc
Q 035702 152 NLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLT 188 (202)
Q Consensus 152 ~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~ 188 (202)
+|++|++++|+++ .+|..+.++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 44444555555555555555554
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.39 E-value=2.6e-07 Score=84.07 Aligned_cols=121 Identities=21% Similarity=0.298 Sum_probs=94.5
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCc--CcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEE
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNG--FHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYF 156 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~--l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L 156 (202)
..++.+.+.+|.+.. ++... ..+.|+.|-+..|. +.......|..++.|++||+++|.--+.+|..++++-+|++|
T Consensus 523 ~~~rr~s~~~~~~~~-~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEH-IAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchhh-ccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 456777777776654 22222 23468899999986 442333457789999999999987767999999999999999
Q ss_pred EeecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702 157 HVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202 (202)
Q Consensus 157 ~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~ 202 (202)
++++..++ .+|..+.++.+|.+|++..+.....+|.....+.+||
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr 645 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR 645 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence 99999999 8999999999999999998876556676666677764
No 41
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.38 E-value=3.5e-08 Score=69.59 Aligned_cols=110 Identities=26% Similarity=0.323 Sum_probs=88.6
Q ss_pred cEEEEEcCCCCCccccC---ccccCCCCCcEEEccCCcCcccCchhcc-CCCCCCeEeCCCCcCccCcChhccCCCCCcE
Q 035702 80 RVTELNLSSQRIGGILS---PYVGNLSFLRYINLADNGFHGEIPQEIG-NLLRLEKLALPNNSFSGTIPTNLSRCSNLIY 155 (202)
Q Consensus 80 ~v~~L~l~~~~l~~~~~---~~l~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~ 155 (202)
....++|+++.+-- ++ ..+....+|+..++++|.+. .+|+.|. .++..+.+++++|+++ .+|..+..++.|+.
T Consensus 28 E~h~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred HhhhcccccchhhH-HHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 34556777766542 22 33556677888999999999 6666655 4568999999999999 89999999999999
Q ss_pred EEeecccCcccCChhccCCCCCceeeccccccccccChh
Q 035702 156 FHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDF 194 (202)
Q Consensus 156 L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~ 194 (202)
++++.|.+. ..|+.+..+.++..|+..+|... .||-.
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~d 141 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVD 141 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHH
Confidence 999999999 77888888999999999999876 66644
No 42
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.09 E-value=6.9e-06 Score=61.58 Aligned_cols=101 Identities=23% Similarity=0.282 Sum_probs=78.8
Q ss_pred cEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcC--hhccCCCCCcEEE
Q 035702 80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIP--TNLSRCSNLIYFH 157 (202)
Q Consensus 80 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p--~~l~~l~~L~~L~ 157 (202)
+...+++++|.+... +.|..++.|.+|.+.+|.++...|.--.-+++|+.|.+.+|.+. .+- +.+..+++|++|.
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceee
Confidence 456789999988752 45888999999999999999555554344678999999999887 433 4567889999999
Q ss_pred eecccCcccCCh----hccCCCCCceeeccc
Q 035702 158 VGNNKLEGQIPK----EIGSLLKLQTLALYY 184 (202)
Q Consensus 158 l~~n~~~g~~p~----~~~~l~~L~~L~l~~ 184 (202)
+-+|.++. .+. .+..+|+|+.||+..
T Consensus 120 ll~Npv~~-k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEH-KKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhc-ccCceeEEEEecCcceEeehhh
Confidence 99999873 222 366889999999754
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.04 E-value=1.5e-07 Score=82.10 Aligned_cols=101 Identities=27% Similarity=0.400 Sum_probs=61.0
Q ss_pred EEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChh-ccCCCCCcEEEee
Q 035702 81 VTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTN-LSRCSNLIYFHVG 159 (202)
Q Consensus 81 v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~-l~~l~~L~~L~l~ 159 (202)
+...+.+.|.+.- +..++.-++.++.|+|+.|++.... .+..+++|++|||++|.+. .+|.- ..++ .|+.|.++
T Consensus 166 L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred HhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hheeeeec
Confidence 3444555555554 4555666677777777777776332 5666777777777777776 55531 2233 36667777
Q ss_pred cccCcccCChhccCCCCCceeeccccccc
Q 035702 160 NNKLEGQIPKEIGSLLKLQTLALYYNYLT 188 (202)
Q Consensus 160 ~n~~~g~~p~~~~~l~~L~~L~l~~N~l~ 188 (202)
+|.++ .+ ..+.++.+|+.||++.|-+.
T Consensus 241 nN~l~-tL-~gie~LksL~~LDlsyNll~ 267 (1096)
T KOG1859|consen 241 NNALT-TL-RGIENLKSLYGLDLSYNLLS 267 (1096)
T ss_pred ccHHH-hh-hhHHhhhhhhccchhHhhhh
Confidence 77665 32 34566666777777766554
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.02 E-value=1.3e-06 Score=73.70 Aligned_cols=102 Identities=24% Similarity=0.329 Sum_probs=42.0
Q ss_pred cEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEee
Q 035702 80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVG 159 (202)
Q Consensus 80 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~ 159 (202)
.++.+++.+|.+.+. ...+..+++|++|++++|.++...+ +..++.|+.|++++|.++ .+. .+..++.|+.++++
T Consensus 96 ~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~-~~~-~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 96 SLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLIS-DIS-GLESLKSLKLLDLS 170 (414)
T ss_pred ceeeeeccccchhhc-ccchhhhhcchheeccccccccccc--hhhccchhhheeccCcch-hcc-CCccchhhhcccCC
Confidence 344444444444442 1113344444444555444442211 233444444444444444 222 22334444444444
Q ss_pred cccCcccCChh-ccCCCCCceeecccccc
Q 035702 160 NNKLEGQIPKE-IGSLLKLQTLALYYNYL 187 (202)
Q Consensus 160 ~n~~~g~~p~~-~~~l~~L~~L~l~~N~l 187 (202)
+|.++ .+... ...+.+++.+++.+|.+
T Consensus 171 ~n~i~-~ie~~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 171 YNRIV-DIENDELSELISLEELDLGGNSI 198 (414)
T ss_pred cchhh-hhhhhhhhhccchHHHhccCCch
Confidence 44444 22111 23444444444444443
No 45
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=1.1e-06 Score=72.48 Aligned_cols=83 Identities=22% Similarity=0.172 Sum_probs=42.0
Q ss_pred CcEEEEEcCCCCCccccC--ccccCCCCCcEEEccCCcCcccCchh-ccCCCCCCeEeCCCCcCccCcC-hhccCCCCCc
Q 035702 79 QRVTELNLSSQRIGGILS--PYVGNLSFLRYINLADNGFHGEIPQE-IGNLLRLEKLALPNNSFSGTIP-TNLSRCSNLI 154 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~--~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~ls~n~l~~~~p-~~l~~l~~L~ 154 (202)
.+|+.|+|++|-+..-.+ .-...+++|+.|+++.|.+.-..... -..+++|+.|.++.|.++...- .....+|+|+
T Consensus 146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~ 225 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLE 225 (505)
T ss_pred CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHH
Confidence 457777777766553222 22456677777777777664222111 1134555666666665553221 1123344444
Q ss_pred EEEeecc
Q 035702 155 YFHVGNN 161 (202)
Q Consensus 155 ~L~l~~n 161 (202)
.|++..|
T Consensus 226 ~L~L~~N 232 (505)
T KOG3207|consen 226 VLYLEAN 232 (505)
T ss_pred Hhhhhcc
Confidence 4444444
No 46
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=3.2e-06 Score=69.91 Aligned_cols=109 Identities=17% Similarity=0.147 Sum_probs=55.5
Q ss_pred CcEEEEEcCCCCCccc-cCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcC--hhccCCCCCcE
Q 035702 79 QRVTELNLSSQRIGGI-LSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIP--TNLSRCSNLIY 155 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p--~~l~~l~~L~~ 155 (202)
.+++.|.+++++++-. +...+..+++|+.|++..|...+.......-+..|+.|||++|.+- ..+ ...+.++.|+.
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhh
Confidence 4555555555555421 1122344555666666655321121122233455666666666655 333 34456666666
Q ss_pred EEeecccCccc-CChh-----ccCCCCCceeeccccccc
Q 035702 156 FHVGNNKLEGQ-IPKE-----IGSLLKLQTLALYYNYLT 188 (202)
Q Consensus 156 L~l~~n~~~g~-~p~~-----~~~l~~L~~L~l~~N~l~ 188 (202)
|+++.+.+... +|+. --.+++|++|++..|++.
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 66666666421 1221 234566777777777664
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.90 E-value=4.4e-06 Score=70.42 Aligned_cols=105 Identities=27% Similarity=0.363 Sum_probs=82.4
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
..+..+.++.|.+.. .-..+..+++|+.+++.+|.+. .+...+..+++|++|++++|.++. +. .+..++.|+.|++
T Consensus 72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~-i~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITK-LE-GLSTLTLLKELNL 147 (414)
T ss_pred HhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccc-cc-chhhccchhhhee
Confidence 345566677777665 3344788899999999999998 444336789999999999999984 33 3567888999999
Q ss_pred ecccCcccCChhccCCCCCceeecccccccc
Q 035702 159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTR 189 (202)
Q Consensus 159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g 189 (202)
.+|.++ .+ ..+..+++|+.+++++|.++.
T Consensus 148 ~~N~i~-~~-~~~~~l~~L~~l~l~~n~i~~ 176 (414)
T KOG0531|consen 148 SGNLIS-DI-SGLESLKSLKLLDLSYNRIVD 176 (414)
T ss_pred ccCcch-hc-cCCccchhhhcccCCcchhhh
Confidence 999998 44 456668999999999999883
No 48
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.71 E-value=7.2e-05 Score=56.24 Aligned_cols=102 Identities=28% Similarity=0.363 Sum_probs=74.7
Q ss_pred EEEEcCCCCCccccCcccc-CCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeec
Q 035702 82 TELNLSSQRIGGILSPYVG-NLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGN 160 (202)
Q Consensus 82 ~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~ 160 (202)
+++++.+..+... ..++ -......+||++|.+- .+ +.|..++.|.+|.+++|+++..-|.--..+++|..|.+.+
T Consensus 22 ~e~~LR~lkip~i--enlg~~~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 22 RELDLRGLKIPVI--ENLGATLDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred cccccccccccch--hhccccccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 4556666554421 1111 2345678999999986 32 3578899999999999999965555445678899999999
Q ss_pred ccCcccCC--hhccCCCCCceeeccccccc
Q 035702 161 NKLEGQIP--KEIGSLLKLQTLALYYNYLT 188 (202)
Q Consensus 161 n~~~g~~p--~~~~~l~~L~~L~l~~N~l~ 188 (202)
|.+. .+- +.+..+|+|++|.+-+|.++
T Consensus 98 Nsi~-~l~dl~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 98 NSIQ-ELGDLDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred cchh-hhhhcchhccCCccceeeecCCchh
Confidence 9986 322 35778999999999999876
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.69 E-value=9.7e-07 Score=77.21 Aligned_cols=104 Identities=25% Similarity=0.295 Sum_probs=82.7
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchh-ccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEE
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQE-IGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFH 157 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ 157 (202)
..++.|+|+.|+++.. ..+..+++|++||++.|.+. .+|.. ...+ .|+.|.+++|.++ .+ ..+.++.+|+.||
T Consensus 187 ~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~-tL-~gie~LksL~~LD 260 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALT-TL-RGIENLKSLYGLD 260 (1096)
T ss_pred HHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHH-hh-hhHHhhhhhhccc
Confidence 5789999999999874 36889999999999999998 55542 1223 4999999999998 43 3578999999999
Q ss_pred eecccCcccC-ChhccCCCCCceeeccccccc
Q 035702 158 VGNNKLEGQI-PKEIGSLLKLQTLALYYNYLT 188 (202)
Q Consensus 158 l~~n~~~g~~-p~~~~~l~~L~~L~l~~N~l~ 188 (202)
+++|-+.+.- -..++.+..|+.|.|.||.+-
T Consensus 261 lsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 261 LSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 9999987532 134667788999999999875
No 50
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.52 E-value=7.2e-05 Score=58.11 Aligned_cols=100 Identities=19% Similarity=0.179 Sum_probs=56.1
Q ss_pred cEEEEEcCCCCCccccCccccCCCCCcEEEccCC--cCcccCchhccCCCCCCeEeCCCCcCcc-CcChhccCCCCCcEE
Q 035702 80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADN--GFHGEIPQEIGNLLRLEKLALPNNSFSG-TIPTNLSRCSNLIYF 156 (202)
Q Consensus 80 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n--~l~~~~p~~~~~l~~L~~L~ls~n~l~~-~~p~~l~~l~~L~~L 156 (202)
.++.+++.+.+++.. ..+..+++|++|.++.| .+.+.++.-...+++|+++++++|++.. .--..+..+.+|..|
T Consensus 44 ~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 44 ELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL 121 (260)
T ss_pred chhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence 344444444444431 33566777777777777 4444444444445777777777777762 001224455667777
Q ss_pred EeecccCcccCC----hhccCCCCCceeec
Q 035702 157 HVGNNKLEGQIP----KEIGSLLKLQTLAL 182 (202)
Q Consensus 157 ~l~~n~~~g~~p----~~~~~l~~L~~L~l 182 (202)
++.+|..++ .- ..+.-+++|++||-
T Consensus 122 dl~n~~~~~-l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 122 DLFNCSVTN-LDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hcccCCccc-cccHHHHHHHHhhhhccccc
Confidence 777776653 21 12444566666653
No 51
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.39 E-value=3.5e-05 Score=62.20 Aligned_cols=109 Identities=20% Similarity=0.270 Sum_probs=77.0
Q ss_pred CcEEEEEcCCCCCcc----ccCccccCCCCCcEEEccCCcCccc----CchhccCCCCCCeEeCCCCcCccCcCh----h
Q 035702 79 QRVTELNLSSQRIGG----ILSPYVGNLSFLRYINLADNGFHGE----IPQEIGNLLRLEKLALPNNSFSGTIPT----N 146 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~~p~----~ 146 (202)
+.++.+.++.|++.. .+...+..+++|+.||+.+|.++-. +...+..+++|+.++++++.++..--. .
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a 264 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA 264 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence 456777777777652 1234577889999999999988632 334567788899999999888743222 2
Q ss_pred c-cCCCCCcEEEeecccCccc----CChhccCCCCCceeecccccc
Q 035702 147 L-SRCSNLIYFHVGNNKLEGQ----IPKEIGSLLKLQTLALYYNYL 187 (202)
Q Consensus 147 l-~~l~~L~~L~l~~n~~~g~----~p~~~~~l~~L~~L~l~~N~l 187 (202)
+ ...++|+++.+.+|.++.. +-..+...+.|..|+|++|.+
T Consensus 265 l~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 265 LKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 2 3468899999999988632 222345678899999999988
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.33 E-value=0.00012 Score=65.36 Aligned_cols=113 Identities=15% Similarity=0.189 Sum_probs=73.8
Q ss_pred CcEEEEEcCCCCCcc-ccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCcc-CcChhccCCCCCcEE
Q 035702 79 QRVTELNLSSQRIGG-ILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG-TIPTNLSRCSNLIYF 156 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~-~~p~~l~~l~~L~~L 156 (202)
+.+++|.+.+..+.. .+..-..++++|..||+++.+++ .+ ..++++++|+.|.+.+=.+.. ..-..+.+|++|++|
T Consensus 148 PsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL 225 (699)
T KOG3665|consen 148 PSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL 225 (699)
T ss_pred cccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence 567777777755532 23334567788888888888887 33 567788888888777655552 111345688899999
Q ss_pred EeecccCcccC--Ch----hccCCCCCceeeccccccccccCh
Q 035702 157 HVGNNKLEGQI--PK----EIGSLLKLQTLALYYNYLTRQLPD 193 (202)
Q Consensus 157 ~l~~n~~~g~~--p~----~~~~l~~L~~L~l~~N~l~g~iP~ 193 (202)
|++.......- .. --..+|+|+.||.+++.+.+.+-+
T Consensus 226 DIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le 268 (699)
T KOG3665|consen 226 DISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILE 268 (699)
T ss_pred eccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHH
Confidence 99887665221 11 112478899999988877755443
No 53
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.26 E-value=0.00015 Score=56.43 Aligned_cols=90 Identities=22% Similarity=0.375 Sum_probs=66.5
Q ss_pred cCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCC--cCccCcChhccCCCCCcEEEeecccCcccCChh--
Q 035702 95 LSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNN--SFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKE-- 170 (202)
Q Consensus 95 ~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n--~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~-- 170 (202)
+......+..|+.+.+.+..++ .+ ..+..+++|+.|.++.| ++++.++-....+++|+++++++|++.. ++.
T Consensus 35 ~~gl~d~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~ 110 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLR 110 (260)
T ss_pred cccccccccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccc
Confidence 4444455667777777777766 32 24567899999999999 7777777666777999999999999972 333
Q ss_pred -ccCCCCCceeeccccccc
Q 035702 171 -IGSLLKLQTLALYYNYLT 188 (202)
Q Consensus 171 -~~~l~~L~~L~l~~N~l~ 188 (202)
+..+.+|..|++++|..+
T Consensus 111 pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCSVT 129 (260)
T ss_pred hhhhhcchhhhhcccCCcc
Confidence 456677888999888665
No 54
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.12 E-value=0.00021 Score=34.09 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=15.0
Q ss_pred CCceeeccccccccccChhccCC
Q 035702 176 KLQTLALYYNYLTRQLPDFIGNL 198 (202)
Q Consensus 176 ~L~~L~l~~N~l~g~iP~~~~~l 198 (202)
+|++||+++|+++ .+|.+|++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 4677777777777 777766543
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.11 E-value=0.0018 Score=54.26 Aligned_cols=31 Identities=16% Similarity=0.210 Sum_probs=13.3
Q ss_pred CCcEEEeecccCcccCChhccCCCCCceeecccc
Q 035702 152 NLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYN 185 (202)
Q Consensus 152 ~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N 185 (202)
+|++|++.+|... .+|..+. .+|+.|+++.|
T Consensus 157 SLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 157 SLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred cccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 4455555554433 2232221 24555555443
No 56
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.10 E-value=0.00025 Score=57.34 Aligned_cols=110 Identities=15% Similarity=0.195 Sum_probs=66.7
Q ss_pred CcEEEEEcCCCCCccccCc----cccCCCCCcEEEccCCcCcccC-------------chhccCCCCCCeEeCCCCcCcc
Q 035702 79 QRVTELNLSSQRIGGILSP----YVGNLSFLRYINLADNGFHGEI-------------PQEIGNLLRLEKLALPNNSFSG 141 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~----~l~~l~~L~~L~l~~n~l~~~~-------------p~~~~~l~~L~~L~ls~n~l~~ 141 (202)
++++.++|+.|.+.-..++ -+.+...|++|.+.+|.+.-.- ....+.-+.|+++...+|++..
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 4788999999887644333 3556778888888888875211 1123445678888888887763
Q ss_pred C----cChhccCCCCCcEEEeecccCcc--c--CChhccCCCCCceeeccccccc
Q 035702 142 T----IPTNLSRCSNLIYFHVGNNKLEG--Q--IPKEIGSLLKLQTLALYYNYLT 188 (202)
Q Consensus 142 ~----~p~~l~~l~~L~~L~l~~n~~~g--~--~p~~~~~l~~L~~L~l~~N~l~ 188 (202)
. +-..+...+.|+.+.+..|.+.- . +-..+..++.|+.||+..|-|+
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 1 11234445666666666666531 1 1233556666666666666655
No 57
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=3.1e-05 Score=61.00 Aligned_cols=98 Identities=20% Similarity=0.286 Sum_probs=63.7
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcC--hhccCCCCCcEE
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIP--TNLSRCSNLIYF 156 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p--~~l~~l~~L~~L 156 (202)
..|+.|+.-|+++.++ .-..+++.|+.|.|+-|.++..-| +..++.|+.|+|..|.|. .+- .-+.++++|+.|
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhH
Confidence 3456666666666652 123467778888888888773322 567778888888888777 333 234677888888
Q ss_pred EeecccCcccCCh-----hccCCCCCceee
Q 035702 157 HVGNNKLEGQIPK-----EIGSLLKLQTLA 181 (202)
Q Consensus 157 ~l~~n~~~g~~p~-----~~~~l~~L~~L~ 181 (202)
.|..|.=.|.-+. .+.-+|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8888876655443 244567777765
No 58
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.73 E-value=0.0079 Score=41.72 Aligned_cols=117 Identities=19% Similarity=0.292 Sum_probs=61.3
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
.+++.+.+.. .+...-...|..++.|+.+.+.++ +...-...+...++++.+.+.+ .+...-...+..+++|+.+++
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence 4678888874 566655566888889999999886 5534445677887899999976 444233355677899999999
Q ss_pred ecccCcccCC-hhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702 159 GNNKLEGQIP-KEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202 (202)
Q Consensus 159 ~~n~~~g~~p-~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~ 202 (202)
..+ ++ .++ ..+.+. +++.+.+.. .+...-...|.++++|+
T Consensus 89 ~~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 89 PSN-IT-EIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TTT--B-EEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred Ccc-cc-EEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 765 44 333 346666 889888876 44423446777777764
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=0.00052 Score=54.76 Aligned_cols=83 Identities=24% Similarity=0.330 Sum_probs=49.5
Q ss_pred CcEEEEEcCCCCCcc--ccCccccCCCCCcEEEccCCcCcccCchhc-cCCCCCCeEeCCCCcCccCcC-hhccCCCCCc
Q 035702 79 QRVTELNLSSQRIGG--ILSPYVGNLSFLRYINLADNGFHGEIPQEI-GNLLRLEKLALPNNSFSGTIP-TNLSRCSNLI 154 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~ls~n~l~~~~p-~~l~~l~~L~ 154 (202)
.+|++++|.+|.++. .+-.-+.++++|++|+++.|.+...+- .+ ..+.+|++|-|.+..+...-. ..+..+|.++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 456777777777663 122235567777777777777763322 22 245677777777766654333 3345666666
Q ss_pred EEEeeccc
Q 035702 155 YFHVGNNK 162 (202)
Q Consensus 155 ~L~l~~n~ 162 (202)
.++++.|.
T Consensus 150 elHmS~N~ 157 (418)
T KOG2982|consen 150 ELHMSDNS 157 (418)
T ss_pred hhhhccch
Confidence 77666663
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.66 E-value=0.0048 Score=48.83 Aligned_cols=106 Identities=20% Similarity=0.231 Sum_probs=71.1
Q ss_pred CcEEEEEcCCCCCccccCcc----ccCCCCCcEEEccCCcCcccCchh-------------ccCCCCCCeEeCCCCcCcc
Q 035702 79 QRVTELNLSSQRIGGILSPY----VGNLSFLRYINLADNGFHGEIPQE-------------IGNLLRLEKLALPNNSFSG 141 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~----l~~l~~L~~L~l~~n~l~~~~p~~-------------~~~l~~L~~L~ls~n~l~~ 141 (202)
++++.++|+.|.+....|+. +.+-+.|++|.+++|.+.-..-.. ..+-|.|+++...+|++.
T Consensus 92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle- 170 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE- 170 (388)
T ss_pred CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-
Confidence 67888999999887766643 566678999999999875211111 233577888888888877
Q ss_pred CcChh-----ccCCCCCcEEEeecccCcccCCh--------hccCCCCCceeeccccccc
Q 035702 142 TIPTN-----LSRCSNLIYFHVGNNKLEGQIPK--------EIGSLLKLQTLALYYNYLT 188 (202)
Q Consensus 142 ~~p~~-----l~~l~~L~~L~l~~n~~~g~~p~--------~~~~l~~L~~L~l~~N~l~ 188 (202)
..|.. +..-..|+.+.+..|.|. |. .+..+.+|+.||+..|-|+
T Consensus 171 ngs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 171 NGSKELSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred cCcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchh
Confidence 33322 222246777777777775 32 2345667888888888776
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.50 E-value=0.0016 Score=58.45 Aligned_cols=108 Identities=20% Similarity=0.261 Sum_probs=77.3
Q ss_pred CcEEEEEcCCCCCcc-ccCccc-cCCCCCcEEEccCCcCcc-cCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcE
Q 035702 79 QRVTELNLSSQRIGG-ILSPYV-GNLSFLRYINLADNGFHG-EIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIY 155 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~-~~~~~l-~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~ 155 (202)
.+++.|+++|...-. .-+..+ ..+|+|+.|.+.+-.+.. ....-..++++|..||+|+.+++ .+ ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHH
Confidence 467788888754321 112222 357899999999877652 23344567899999999999998 44 67899999999
Q ss_pred EEeecccCcc-cCChhccCCCCCceeeccccccc
Q 035702 156 FHVGNNKLEG-QIPKEIGSLLKLQTLALYYNYLT 188 (202)
Q Consensus 156 L~l~~n~~~g-~~p~~~~~l~~L~~L~l~~N~l~ 188 (202)
|.+.+=.+.. ..-..+.++++|+.||+|.....
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence 9988776652 11236789999999999986544
No 62
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.45 E-value=0.0013 Score=31.26 Aligned_cols=12 Identities=42% Similarity=0.617 Sum_probs=4.9
Q ss_pred CCeEeCCCCcCc
Q 035702 129 LEKLALPNNSFS 140 (202)
Q Consensus 129 L~~L~ls~n~l~ 140 (202)
|++||+++|.++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 334444444444
No 63
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.35 E-value=0.00085 Score=53.60 Aligned_cols=59 Identities=22% Similarity=0.313 Sum_probs=25.5
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccC-chhccCCCCCCeEeCCCC
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEI-PQEIGNLLRLEKLALPNN 137 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~ls~n 137 (202)
++++.|+++.|.+...+..--....+|+.|-+.+..+.... ...+..+|.++.+.++.|
T Consensus 97 P~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 97 PALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred ccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 45555555555554322211123444555555554443222 222334444445544444
No 64
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.20 E-value=8.8e-05 Score=57.12 Aligned_cols=85 Identities=21% Similarity=0.206 Sum_probs=72.6
Q ss_pred CCCcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEE
Q 035702 77 RHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYF 156 (202)
Q Consensus 77 ~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L 156 (202)
+..+++.||++.|++.. +...+..++.++.|+++.|.+. ..|..++++..++.+++..|.++ ..|.+++..+.++++
T Consensus 40 ~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 34789999999988765 4455777888999999999988 88888999999999999999988 889999999999999
Q ss_pred EeecccCc
Q 035702 157 HVGNNKLE 164 (202)
Q Consensus 157 ~l~~n~~~ 164 (202)
++-.|.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 99988876
No 65
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.00077 Score=53.85 Aligned_cols=39 Identities=28% Similarity=0.415 Sum_probs=20.8
Q ss_pred cCCCCCcEEEeeccc-CcccCChhccCCCCCceeeccccc
Q 035702 148 SRCSNLIYFHVGNNK-LEGQIPKEIGSLLKLQTLALYYNY 186 (202)
Q Consensus 148 ~~l~~L~~L~l~~n~-~~g~~p~~~~~l~~L~~L~l~~N~ 186 (202)
..+++|.+|||+.|. ++...-..+.+++.|++|.++.++
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence 345666666666654 232222345566666666665553
No 66
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.97 E-value=0.015 Score=48.92 Aligned_cols=87 Identities=18% Similarity=0.261 Sum_probs=57.0
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCC-cCccCcChhccCCCCCcEEE
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNN-SFSGTIPTNLSRCSNLIYFH 157 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n-~l~~~~p~~l~~l~~L~~L~ 157 (202)
.+.+.|+++++.++. +| .+ ..+|+.|.++++.--..+|..+ .++|+.|++++| .+. .+|. +|+.|+
T Consensus 52 ~~l~~L~Is~c~L~s-LP-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L~ 118 (426)
T PRK15386 52 RASGRLYIKDCDIES-LP-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVRSLE 118 (426)
T ss_pred cCCCEEEeCCCCCcc-cC-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------ccceEE
Confidence 457789999998776 45 22 2469999998853323667655 368999999998 555 5665 466777
Q ss_pred eecccCc--ccCChhccCCCCCceeeccc
Q 035702 158 VGNNKLE--GQIPKEIGSLLKLQTLALYY 184 (202)
Q Consensus 158 l~~n~~~--g~~p~~~~~l~~L~~L~l~~ 184 (202)
+..+... +.+|. +|+.|.+.+
T Consensus 119 L~~n~~~~L~~LPs------sLk~L~I~~ 141 (426)
T PRK15386 119 IKGSATDSIKNVPN------GLTSLSINS 141 (426)
T ss_pred eCCCCCcccccCcc------hHhheeccc
Confidence 7766543 23443 466666643
No 67
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.94 E-value=0.013 Score=46.55 Aligned_cols=110 Identities=29% Similarity=0.417 Sum_probs=61.0
Q ss_pred CcEEEEEcCCCCCccc----cCccccCCCCCcEEEccCCcCcc---cCc-------hhccCCCCCCeEeCCCCcCccCcC
Q 035702 79 QRVTELNLSSQRIGGI----LSPYVGNLSFLRYINLADNGFHG---EIP-------QEIGNLLRLEKLALPNNSFSGTIP 144 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~----~~~~l~~l~~L~~L~l~~n~l~~---~~p-------~~~~~l~~L~~L~ls~n~l~~~~p 144 (202)
..++.++|+||.+... +...+.+-.+|+..+++.-.... .++ +.+-.+++|+.++||+|.|....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 4567778887776532 23345555666666666543321 122 223456777777777777766555
Q ss_pred hhc----cCCCCCcEEEeecccCc----ccCC---------hhccCCCCCceeeccccccc
Q 035702 145 TNL----SRCSNLIYFHVGNNKLE----GQIP---------KEIGSLLKLQTLALYYNYLT 188 (202)
Q Consensus 145 ~~l----~~l~~L~~L~l~~n~~~----g~~p---------~~~~~l~~L~~L~l~~N~l~ 188 (202)
+.+ +.-+.|.+|.+++|.+. |.+- ....+-|.|+......|++.
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 443 44466777777777653 1111 11234556666666666654
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.37 E-value=0.078 Score=36.60 Aligned_cols=86 Identities=19% Similarity=0.210 Sum_probs=52.6
Q ss_pred ccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCC
Q 035702 97 PYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLK 176 (202)
Q Consensus 97 ~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~ 176 (202)
..|...++|+.+.+.. .+...-...|..+++|+.+.+..+ +...-...+.++++++.+.+.+ .+...-...+..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 3467778999999985 566444567888889999999886 6623335677888999999965 443122345667899
Q ss_pred Cceeecccc
Q 035702 177 LQTLALYYN 185 (202)
Q Consensus 177 L~~L~l~~N 185 (202)
|+.+++..+
T Consensus 83 l~~i~~~~~ 91 (129)
T PF13306_consen 83 LKNIDIPSN 91 (129)
T ss_dssp ECEEEETTT
T ss_pred ccccccCcc
Confidence 999999765
No 69
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.36 E-value=0.0096 Score=26.36 Aligned_cols=13 Identities=54% Similarity=0.557 Sum_probs=5.8
Q ss_pred CCceeeccccccc
Q 035702 176 KLQTLALYYNYLT 188 (202)
Q Consensus 176 ~L~~L~l~~N~l~ 188 (202)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4556666666554
No 70
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.24 E-value=0.00017 Score=55.59 Aligned_cols=89 Identities=15% Similarity=0.164 Sum_probs=76.9
Q ss_pred ccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCC
Q 035702 97 PYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLK 176 (202)
Q Consensus 97 ~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~ 176 (202)
..+..+...+.||++.|.+- ..-..++-++.+..++++.|.+. .+|..++.+..++.+++..|..+ ..|..+...+.
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence 34667788899999999876 44456677888999999999998 88999999999999999999998 78999999999
Q ss_pred Cceeeccccccc
Q 035702 177 LQTLALYYNYLT 188 (202)
Q Consensus 177 L~~L~l~~N~l~ 188 (202)
++++++-+|.|.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 999999999876
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.82 E-value=0.0013 Score=52.09 Aligned_cols=87 Identities=25% Similarity=0.300 Sum_probs=67.7
Q ss_pred CCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCCh--hccCCCCCce
Q 035702 102 LSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPK--EIGSLLKLQT 179 (202)
Q Consensus 102 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~--~~~~l~~L~~ 179 (202)
+.+.+.|+.=++.++ .+. ....++.|++|.|+-|+++ .+ ..+..+++|+.|.|..|.|. .+-+ .+.++|+|+.
T Consensus 18 l~~vkKLNcwg~~L~-DIs-ic~kMp~lEVLsLSvNkIs-sL-~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DIS-ICEKMPLLEVLSLSVNKIS-SL-APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCcc-HHH-HHHhcccceeEEeeccccc-cc-hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhh
Confidence 445667777788777 322 2457999999999999998 33 34779999999999999987 4432 4678999999
Q ss_pred eeccccccccccCh
Q 035702 180 LALYYNYLTRQLPD 193 (202)
Q Consensus 180 L~l~~N~l~g~iP~ 193 (202)
|-|..|.-.|.-+.
T Consensus 93 LWL~ENPCc~~ag~ 106 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQ 106 (388)
T ss_pred HhhccCCcccccch
Confidence 99999988776654
No 72
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.95 E-value=0.05 Score=26.68 Aligned_cols=18 Identities=39% Similarity=0.501 Sum_probs=10.5
Q ss_pred CCCceeeccccccccccCh
Q 035702 175 LKLQTLALYYNYLTRQLPD 193 (202)
Q Consensus 175 ~~L~~L~l~~N~l~g~iP~ 193 (202)
++|+.|++++|.++ .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 45566666666665 4554
No 73
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.95 E-value=0.05 Score=26.68 Aligned_cols=18 Identities=39% Similarity=0.501 Sum_probs=10.5
Q ss_pred CCCceeeccccccccccCh
Q 035702 175 LKLQTLALYYNYLTRQLPD 193 (202)
Q Consensus 175 ~~L~~L~l~~N~l~g~iP~ 193 (202)
++|+.|++++|.++ .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 45566666666665 4554
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.91 E-value=0.11 Score=25.44 Aligned_cols=13 Identities=46% Similarity=0.667 Sum_probs=6.1
Q ss_pred CCCeEeCCCCcCc
Q 035702 128 RLEKLALPNNSFS 140 (202)
Q Consensus 128 ~L~~L~ls~n~l~ 140 (202)
+|++|++++|.++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.91 E-value=0.11 Score=25.44 Aligned_cols=13 Identities=46% Similarity=0.667 Sum_probs=6.1
Q ss_pred CCCeEeCCCCcCc
Q 035702 128 RLEKLALPNNSFS 140 (202)
Q Consensus 128 ~L~~L~ls~n~l~ 140 (202)
+|++|++++|.++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.10 E-value=0.03 Score=26.94 Aligned_cols=18 Identities=33% Similarity=0.294 Sum_probs=8.8
Q ss_pred CCCceeeccccccccccC
Q 035702 175 LKLQTLALYYNYLTRQLP 192 (202)
Q Consensus 175 ~~L~~L~l~~N~l~g~iP 192 (202)
++|++|++++|++++...
T Consensus 2 ~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGA 19 (24)
T ss_dssp TT-SEEE-TSSBEHHHHH
T ss_pred CCCCEEEccCCcCCHHHH
Confidence 455666666666654433
No 77
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=90.77 E-value=0.01 Score=47.58 Aligned_cols=85 Identities=16% Similarity=0.266 Sum_probs=57.1
Q ss_pred CCcEEEccCCcCcc-cCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeeccc-Cccc-CChhccCCCCCcee
Q 035702 104 FLRYINLADNGFHG-EIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNK-LEGQ-IPKEIGSLLKLQTL 180 (202)
Q Consensus 104 ~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~-~~g~-~p~~~~~l~~L~~L 180 (202)
.|+++|+++..++. ....-+..+.+|+.|.+.++++.+.+-..+++-..|+.++++.+. ++.. +.-.+.+++.|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 47888888887763 233345667788888888888887777777777888888887653 3311 11235567777777
Q ss_pred eccccccc
Q 035702 181 ALYYNYLT 188 (202)
Q Consensus 181 ~l~~N~l~ 188 (202)
+++-+.++
T Consensus 266 NlsWc~l~ 273 (419)
T KOG2120|consen 266 NLSWCFLF 273 (419)
T ss_pred CchHhhcc
Confidence 77665443
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.21 E-value=0.065 Score=40.58 Aligned_cols=83 Identities=16% Similarity=0.131 Sum_probs=54.4
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcC-cccCchhcc-CCCCCCeEeCCCC-cCccCcChhccCCCCCcE
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGF-HGEIPQEIG-NLLRLEKLALPNN-SFSGTIPTNLSRCSNLIY 155 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l-~~~~p~~~~-~l~~L~~L~ls~n-~l~~~~p~~l~~l~~L~~ 155 (202)
-.|+.++-++..+...--+.+..++.++.|.+.++.- ....-+.++ -.++|+.|++++| +||..--..+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 3477888888777664446677778888888877742 211112222 3578888888876 577555566777888888
Q ss_pred EEeecc
Q 035702 156 FHVGNN 161 (202)
Q Consensus 156 L~l~~n 161 (202)
|.+.+=
T Consensus 181 L~l~~l 186 (221)
T KOG3864|consen 181 LHLYDL 186 (221)
T ss_pred HHhcCc
Confidence 777653
No 79
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=88.35 E-value=0.29 Score=24.20 Aligned_cols=18 Identities=39% Similarity=0.528 Sum_probs=13.4
Q ss_pred CCCceeeccccccccccCh
Q 035702 175 LKLQTLALYYNYLTRQLPD 193 (202)
Q Consensus 175 ~~L~~L~l~~N~l~g~iP~ 193 (202)
++|+.|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 36778888888887 7775
No 80
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=81.95 E-value=1.3 Score=21.80 Aligned_cols=13 Identities=38% Similarity=0.588 Sum_probs=6.0
Q ss_pred CCCeEeCCCCcCc
Q 035702 128 RLEKLALPNNSFS 140 (202)
Q Consensus 128 ~L~~L~ls~n~l~ 140 (202)
+|+.|+++.|+++
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 4444444444443
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.61 E-value=0.35 Score=36.77 Aligned_cols=81 Identities=16% Similarity=0.164 Sum_probs=54.7
Q ss_pred CCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCc-Chhc-cCCCCCcEEEeeccc-CcccCChhccCCCCCcee
Q 035702 104 FLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTI-PTNL-SRCSNLIYFHVGNNK-LEGQIPKEIGSLLKLQTL 180 (202)
Q Consensus 104 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~-p~~l-~~l~~L~~L~l~~n~-~~g~~p~~~~~l~~L~~L 180 (202)
.++.+|-++..+..+--+.+.+++.++.|.+.++.--+.. -+-+ .-.++|+.|++++|. ||..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 3778888888888666677888888888888877533211 0111 144789999999875 553323456677788877
Q ss_pred eccc
Q 035702 181 ALYY 184 (202)
Q Consensus 181 ~l~~ 184 (202)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 7654
No 82
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=77.83 E-value=2 Score=21.35 Aligned_cols=13 Identities=38% Similarity=0.606 Sum_probs=7.1
Q ss_pred CCCeEeCCCCcCc
Q 035702 128 RLEKLALPNNSFS 140 (202)
Q Consensus 128 ~L~~L~ls~n~l~ 140 (202)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 83
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=76.17 E-value=0.82 Score=38.77 Aligned_cols=60 Identities=22% Similarity=0.235 Sum_probs=26.4
Q ss_pred CCCCCeEeCCCCc-CccCcChhcc-CCCCCcEEEeeccc-Cccc-CChhccCCCCCceeecccc
Q 035702 126 LLRLEKLALPNNS-FSGTIPTNLS-RCSNLIYFHVGNNK-LEGQ-IPKEIGSLLKLQTLALYYN 185 (202)
Q Consensus 126 l~~L~~L~ls~n~-l~~~~p~~l~-~l~~L~~L~l~~n~-~~g~-~p~~~~~l~~L~~L~l~~N 185 (202)
+++|+.++++... ++...-..+. .+++|+.|.+.++. ++.. +-.....++.|++|+++.+
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 4555555555554 3322222222 24556665544444 3311 1112234455666665544
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=72.38 E-value=2.3 Score=37.12 Aligned_cols=80 Identities=19% Similarity=0.179 Sum_probs=46.2
Q ss_pred cCCCCCcEEEccCCcCccc--CchhccCCCCCCeEeCCCC--cCccCcChhcc--CCCCCcEEEeecccCcccCCh---h
Q 035702 100 GNLSFLRYINLADNGFHGE--IPQEIGNLLRLEKLALPNN--SFSGTIPTNLS--RCSNLIYFHVGNNKLEGQIPK---E 170 (202)
Q Consensus 100 ~~l~~L~~L~l~~n~l~~~--~p~~~~~l~~L~~L~ls~n--~l~~~~p~~l~--~l~~L~~L~l~~n~~~g~~p~---~ 170 (202)
.+.+.+..+.+++|.+... +..--...|+|.+|+|++| .+. . -.++. +...|+.|-+.+|.+...+-. .
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~-~-~~el~K~k~l~Leel~l~GNPlc~tf~~~s~y 292 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS-S-ESELDKLKGLPLEELVLEGNPLCTTFSDRSEY 292 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc-c-hhhhhhhcCCCHHHeeecCCccccchhhhHHH
Confidence 3556677778888876521 1222234578888888888 433 1 12222 334678888888888644321 1
Q ss_pred c----cCCCCCceee
Q 035702 171 I----GSLLKLQTLA 181 (202)
Q Consensus 171 ~----~~l~~L~~L~ 181 (202)
+ ..+|+|..||
T Consensus 293 v~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 293 VSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHhcchheeec
Confidence 1 2466666665
No 85
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=70.21 E-value=1.7 Score=36.77 Aligned_cols=104 Identities=18% Similarity=0.170 Sum_probs=62.1
Q ss_pred CcEEEEEcCCC-CCcccc----CccccCCCCCcEEEccCCc-CcccCchhcc-CCCCCCeEeCCCCc-CccCcC-hhccC
Q 035702 79 QRVTELNLSSQ-RIGGIL----SPYVGNLSFLRYINLADNG-FHGEIPQEIG-NLLRLEKLALPNNS-FSGTIP-TNLSR 149 (202)
Q Consensus 79 ~~v~~L~l~~~-~l~~~~----~~~l~~l~~L~~L~l~~n~-l~~~~p~~~~-~l~~L~~L~ls~n~-l~~~~p-~~l~~ 149 (202)
.+++.++++++ ...... ......+..|+.++++... ++...-..+. .+++|+.|.+.++. ++..-- .....
T Consensus 214 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~ 293 (482)
T KOG1947|consen 214 PNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAER 293 (482)
T ss_pred chhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHh
Confidence 56888888762 111111 1234456788999999887 5533333333 37899999977776 553322 23356
Q ss_pred CCCCcEEEeecccCccc--CChhccCCCCCceeec
Q 035702 150 CSNLIYFHVGNNKLEGQ--IPKEIGSLLKLQTLAL 182 (202)
Q Consensus 150 l~~L~~L~l~~n~~~g~--~p~~~~~l~~L~~L~l 182 (202)
++.|++|+++.+..... +.....++++++.|.+
T Consensus 294 ~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 294 CPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred cCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 78899999998875321 2222334555555443
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=49.96 E-value=9.8 Score=33.40 Aligned_cols=63 Identities=24% Similarity=0.259 Sum_probs=41.6
Q ss_pred CCCCCCeEeCCCCcCccCcC---hhccCCCCCcEEEeecc--cCcccCChhccC--CCCCceeeccccccccc
Q 035702 125 NLLRLEKLALPNNSFSGTIP---TNLSRCSNLIYFHVGNN--KLEGQIPKEIGS--LLKLQTLALYYNYLTRQ 190 (202)
Q Consensus 125 ~l~~L~~L~ls~n~l~~~~p---~~l~~l~~L~~L~l~~n--~~~g~~p~~~~~--l~~L~~L~l~~N~l~g~ 190 (202)
+.+.+..+.|++|++. .+- .--..-++|..|+|++| .+. .. ..+.+ ...|++|-+.||.+...
T Consensus 216 n~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~-~~-~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKIS-SE-SELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhc-ch-hhhhhhcCCCHHHeeecCCccccc
Confidence 4567888899999877 222 12235578999999999 443 11 22322 33688999999987643
No 87
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=43.16 E-value=1.2 Score=38.63 Aligned_cols=38 Identities=24% Similarity=0.299 Sum_probs=19.6
Q ss_pred CCCcEEEeecccCccc----CChhccCCCCCceeeccccccc
Q 035702 151 SNLIYFHVGNNKLEGQ----IPKEIGSLLKLQTLALYYNYLT 188 (202)
Q Consensus 151 ~~L~~L~l~~n~~~g~----~p~~~~~l~~L~~L~l~~N~l~ 188 (202)
..++++++..|.++.. +.+.+..+++++.+.++.|.+.
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 4455666666665432 2223344555666666665554
No 88
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=37.79 E-value=27 Score=36.73 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=22.4
Q ss_pred EccCCcCcccCchhccCCCCCCeEeCCCCcCc
Q 035702 109 NLADNGFHGEIPQEIGNLLRLEKLALPNNSFS 140 (202)
Q Consensus 109 ~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~ 140 (202)
||++|.|+-.-+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 56778887444456677778888888877655
No 89
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=34.35 E-value=27 Score=16.64 Aligned_cols=15 Identities=27% Similarity=0.131 Sum_probs=10.6
Q ss_pred CCCCceeeccccc-cc
Q 035702 174 LLKLQTLALYYNY-LT 188 (202)
Q Consensus 174 l~~L~~L~l~~N~-l~ 188 (202)
+++|+.|+++++. ++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 3578888888864 54
No 90
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=29.61 E-value=35 Score=35.94 Aligned_cols=32 Identities=31% Similarity=0.431 Sum_probs=27.7
Q ss_pred EcCCCCCccccCccccCCCCCcEEEccCCcCc
Q 035702 85 NLSSQRIGGILSPYVGNLSFLRYINLADNGFH 116 (202)
Q Consensus 85 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~ 116 (202)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57899999866677888999999999999876
Done!