Query 035702
Match_columns 202
No_of_seqs 247 out of 2548
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 08:54:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035702.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035702hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 1.8E-30 6.2E-35 208.9 14.2 168 34-202 2-177 (313)
2 4eco_A Uncharacterized protein 99.9 8.6E-27 2.9E-31 203.7 11.2 162 35-198 27-298 (636)
3 3rgz_A Protein brassinosteroid 99.9 1.4E-26 4.7E-31 206.1 12.3 158 32-192 6-195 (768)
4 4ecn_A Leucine-rich repeat pro 99.9 1E-25 3.5E-30 202.2 9.8 160 34-199 265-541 (876)
5 4fcg_A Uncharacterized protein 99.9 1.8E-24 6.3E-29 174.9 6.6 166 33-202 22-209 (328)
6 3e6j_A Variable lymphocyte rec 99.9 2.3E-21 7.8E-26 149.2 13.3 145 57-202 9-162 (229)
7 2o6s_A Variable lymphocyte rec 99.8 4.2E-20 1.4E-24 139.7 13.2 138 65-202 5-151 (208)
8 2v9t_B SLIT homolog 2 protein 99.8 4.1E-20 1.4E-24 141.3 13.2 138 65-202 9-155 (220)
9 2v70_A SLIT-2, SLIT homolog 2 99.8 7.5E-20 2.6E-24 139.9 12.3 138 65-202 9-156 (220)
10 3m19_A Variable lymphocyte rec 99.8 2.5E-19 8.6E-24 139.3 12.5 122 80-201 60-181 (251)
11 1w8a_A SLIT protein; signaling 99.8 2.6E-19 8.8E-24 134.1 10.6 128 65-192 6-143 (192)
12 2o6q_A Variable lymphocyte rec 99.8 1.1E-18 3.7E-23 137.1 13.5 122 80-201 38-159 (270)
13 3rgz_A Protein brassinosteroid 99.8 3.4E-19 1.2E-23 158.6 11.4 77 126-202 631-707 (768)
14 2o6r_A Variable lymphocyte rec 99.8 1E-18 3.6E-23 128.8 11.2 128 65-192 5-141 (177)
15 1ogq_A PGIP-2, polygalacturona 99.8 3.6E-19 1.2E-23 142.8 7.7 121 79-199 76-198 (313)
16 4fcg_A Uncharacterized protein 99.8 1.1E-18 3.7E-23 141.0 10.1 122 79-202 183-304 (328)
17 4g8a_A TOLL-like receptor 4; l 99.8 3.4E-18 1.1E-22 147.8 12.4 124 79-202 52-176 (635)
18 3m19_A Variable lymphocyte rec 99.8 8.6E-18 3E-22 130.6 12.7 124 79-202 35-158 (251)
19 2je0_A Acidic leucine-rich nuc 99.8 1.3E-18 4.3E-23 124.9 7.3 122 79-202 17-143 (149)
20 3rfs_A Internalin B, repeat mo 99.8 1.3E-17 4.4E-22 131.1 13.5 124 79-202 85-208 (272)
21 3v47_A TOLL-like receptor 5B a 99.8 3.8E-18 1.3E-22 142.7 10.5 137 66-202 7-157 (455)
22 2z81_A CD282 antigen, TOLL-lik 99.7 2.7E-18 9.2E-23 146.8 9.5 135 66-201 3-150 (549)
23 3vq2_A TLR4, TOLL-like recepto 99.7 1.1E-17 3.7E-22 144.7 12.9 124 79-202 32-156 (606)
24 1w8a_A SLIT protein; signaling 99.7 1.2E-17 4.1E-22 124.9 11.0 118 82-202 11-129 (192)
25 2z80_A TOLL-like receptor 2, v 99.7 6.2E-18 2.1E-22 137.5 9.7 121 79-201 52-176 (353)
26 2wfh_A SLIT homolog 2 protein 99.7 1.9E-17 6.7E-22 124.0 11.5 123 66-189 9-140 (193)
27 2ell_A Acidic leucine-rich nuc 99.7 6.9E-18 2.4E-22 123.3 8.7 120 79-201 24-149 (168)
28 3zyi_A Leucine-rich repeat-con 99.7 1.8E-17 6.1E-22 139.1 12.3 123 79-201 75-198 (452)
29 1ozn_A Reticulon 4 receptor; N 99.7 4.2E-17 1.4E-21 128.8 12.8 124 79-202 56-180 (285)
30 2xot_A Amphoterin-induced prot 99.7 2.8E-17 9.7E-22 134.2 12.0 129 65-194 16-154 (361)
31 2id5_A Lingo-1, leucine rich r 99.7 3.1E-17 1.1E-21 138.2 12.2 124 79-202 32-155 (477)
32 2v70_A SLIT-2, SLIT homolog 2 99.7 3E-17 1E-21 125.3 10.8 114 79-192 57-170 (220)
33 2z62_A TOLL-like receptor 4, v 99.7 5.1E-17 1.8E-21 127.7 12.4 122 80-201 29-151 (276)
34 2z66_A Variable lymphocyte rec 99.7 1.9E-17 6.7E-22 131.9 9.3 136 65-201 5-152 (306)
35 3v47_A TOLL-like receptor 5B a 99.7 6.5E-17 2.2E-21 135.3 11.5 122 80-201 276-397 (455)
36 3rfs_A Internalin B, repeat mo 99.7 1.5E-16 5.2E-21 125.0 12.6 122 79-202 63-184 (272)
37 1ozn_A Reticulon 4 receptor; N 99.7 1.8E-16 6.1E-21 125.2 12.6 124 79-202 80-204 (285)
38 2wfh_A SLIT homolog 2 protein 99.7 3.3E-16 1.1E-20 117.3 12.7 117 82-202 13-129 (193)
39 3j0a_A TOLL-like receptor 5; m 99.7 9.4E-17 3.2E-21 144.3 11.5 134 67-202 14-151 (844)
40 4b8c_D Glucose-repressible alc 99.7 2.2E-17 7.5E-22 146.2 7.0 99 99-201 220-318 (727)
41 3oja_B Anopheles plasmodium-re 99.7 6.4E-17 2.2E-21 140.2 9.7 146 56-201 8-173 (597)
42 2o6q_A Variable lymphocyte rec 99.7 3.1E-16 1.1E-20 123.0 12.7 123 79-201 85-207 (270)
43 1ziw_A TOLL-like receptor 3; i 99.7 1.1E-16 3.9E-21 140.1 11.2 123 79-202 25-148 (680)
44 2z66_A Variable lymphocyte rec 99.7 1.5E-16 5E-21 126.8 10.9 123 79-201 126-250 (306)
45 3t6q_A CD180 antigen; protein- 99.7 1.4E-16 4.8E-21 137.8 11.6 111 79-189 33-143 (606)
46 1p9a_G Platelet glycoprotein I 99.7 4.7E-16 1.6E-20 123.5 13.6 121 79-201 77-197 (290)
47 4eco_A Uncharacterized protein 99.7 1.5E-17 5.3E-22 145.2 5.1 121 79-201 206-355 (636)
48 2v9t_B SLIT homolog 2 protein 99.7 2.3E-16 7.9E-21 120.4 11.0 111 79-189 56-166 (220)
49 1p9a_G Platelet glycoprotein I 99.7 4.6E-16 1.6E-20 123.5 12.7 119 80-201 56-174 (290)
50 3o6n_A APL1; leucine-rich repe 99.7 1.1E-16 3.7E-21 131.7 9.2 123 79-202 45-168 (390)
51 2z62_A TOLL-like receptor 4, v 99.7 1.7E-16 5.7E-21 124.8 9.7 121 79-199 52-173 (276)
52 2xwt_C Thyrotropin receptor; s 99.7 2.3E-16 8E-21 121.5 10.3 121 79-201 31-157 (239)
53 1xku_A Decorin; proteoglycan, 99.7 5.5E-16 1.9E-20 124.7 12.5 135 65-202 29-174 (330)
54 3vq2_A TLR4, TOLL-like recepto 99.7 1.5E-16 5.3E-21 137.5 9.8 122 79-200 56-178 (606)
55 3e6j_A Variable lymphocyte rec 99.7 7.3E-16 2.5E-20 118.3 12.4 125 69-202 14-138 (229)
56 2o6s_A Variable lymphocyte rec 99.7 5.3E-16 1.8E-20 117.0 11.4 112 79-190 52-163 (208)
57 2z63_A TOLL-like receptor 4, v 99.7 4.5E-16 1.6E-20 133.4 12.2 122 80-201 29-151 (570)
58 3g39_A Variable lymphocyte rec 99.7 5.5E-16 1.9E-20 113.8 10.9 107 82-191 12-118 (170)
59 3zyj_A Leucine-rich repeat-con 99.7 5.6E-16 1.9E-20 129.5 12.3 123 79-201 64-187 (440)
60 2o6r_A Variable lymphocyte rec 99.7 1E-15 3.6E-20 112.6 12.1 118 82-202 10-127 (177)
61 2ft3_A Biglycan; proteoglycan, 99.7 1.3E-15 4.4E-20 122.8 13.3 131 65-198 31-172 (332)
62 4g8a_A TOLL-like receptor 4; l 99.7 3.5E-16 1.2E-20 135.1 10.1 121 79-199 76-197 (635)
63 4ezg_A Putative uncharacterize 99.6 6.9E-16 2.4E-20 115.6 10.0 119 79-202 66-184 (197)
64 3oja_A Leucine-rich immune mol 99.6 6.3E-16 2.2E-20 131.1 10.5 132 66-202 108-240 (487)
65 2r9u_A Variable lymphocyte rec 99.6 1.8E-15 6E-20 111.5 11.4 105 82-189 15-119 (174)
66 2id5_A Lingo-1, leucine rich r 99.6 8.9E-16 3E-20 129.3 10.8 123 79-201 56-178 (477)
67 2z81_A CD282 antigen, TOLL-lik 99.6 4E-16 1.4E-20 133.4 8.7 123 79-201 50-174 (549)
68 4ezg_A Putative uncharacterize 99.6 9E-16 3.1E-20 115.0 9.5 119 79-202 44-162 (197)
69 4b8c_D Glucose-repressible alc 99.6 2.3E-16 8E-21 139.7 7.0 115 79-197 224-338 (727)
70 1a9n_A U2A', U2A'; complex (nu 99.6 7.8E-16 2.7E-20 113.3 8.6 117 79-202 19-143 (176)
71 1dce_A Protein (RAB geranylger 99.6 8.8E-16 3E-20 132.4 10.3 108 80-192 442-550 (567)
72 2z80_A TOLL-like receptor 2, v 99.6 6.6E-16 2.3E-20 125.5 8.9 122 79-201 76-200 (353)
73 2z7x_B TOLL-like receptor 1, v 99.6 1.8E-15 6.1E-20 128.6 11.5 121 79-201 324-470 (520)
74 2xot_A Amphoterin-induced prot 99.6 1.1E-15 3.8E-20 124.7 9.8 120 79-199 64-187 (361)
75 2z7x_B TOLL-like receptor 1, v 99.6 1.3E-15 4.4E-20 129.6 10.0 117 79-201 21-138 (520)
76 4ecn_A Leucine-rich repeat pro 99.6 2.8E-16 9.5E-21 141.3 6.0 121 79-202 448-598 (876)
77 3t6q_A CD180 antigen; protein- 99.6 2E-15 6.7E-20 130.6 10.8 124 79-202 57-180 (606)
78 2z63_A TOLL-like receptor 4, v 99.6 1.3E-15 4.5E-20 130.5 9.5 123 80-202 397-521 (570)
79 2ell_A Acidic leucine-rich nuc 99.6 1.7E-15 5.6E-20 110.6 8.5 112 79-194 49-165 (168)
80 1wwl_A Monocyte differentiatio 99.6 4.6E-16 1.6E-20 124.5 4.8 122 79-201 121-255 (312)
81 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 4.9E-15 1.7E-19 127.3 11.4 122 79-202 353-500 (562)
82 3o53_A Protein LRIM1, AGAP0063 99.6 4.5E-15 1.5E-19 119.0 10.3 120 79-202 120-240 (317)
83 3oja_B Anopheles plasmodium-re 99.6 5.1E-15 1.7E-19 128.3 11.2 112 79-191 75-187 (597)
84 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 6E-15 2.1E-19 126.8 11.5 108 79-189 52-160 (562)
85 3zyi_A Leucine-rich repeat-con 99.6 7.4E-15 2.5E-19 123.1 11.6 121 79-201 99-244 (452)
86 3o6n_A APL1; leucine-rich repe 99.6 9.2E-15 3.2E-19 120.1 11.2 111 79-190 69-180 (390)
87 3j0a_A TOLL-like receptor 5; m 99.6 5.8E-15 2E-19 132.6 10.9 120 79-198 48-171 (844)
88 1wwl_A Monocyte differentiatio 99.6 1.4E-15 4.8E-20 121.7 5.2 117 79-196 149-273 (312)
89 1xku_A Decorin; proteoglycan, 99.6 1.8E-14 6.2E-19 115.8 11.0 56 144-200 209-264 (330)
90 1ziw_A TOLL-like receptor 3; i 99.6 6.5E-15 2.2E-19 129.0 9.0 114 79-192 49-162 (680)
91 3zyj_A Leucine-rich repeat-con 99.6 1.8E-14 6.3E-19 120.3 11.4 57 79-135 112-168 (440)
92 3oja_A Leucine-rich immune mol 99.5 7E-15 2.4E-19 124.7 7.3 120 80-201 35-171 (487)
93 2je0_A Acidic leucine-rich nuc 99.5 6.4E-15 2.2E-19 105.3 6.0 104 79-184 42-149 (149)
94 2ft3_A Biglycan; proteoglycan, 99.5 1.6E-14 5.3E-19 116.4 8.8 123 79-202 193-323 (332)
95 2xwt_C Thyrotropin receptor; s 99.5 1.1E-14 3.8E-19 112.0 7.3 112 79-193 55-173 (239)
96 3o53_A Protein LRIM1, AGAP0063 99.5 5.7E-15 1.9E-19 118.4 5.9 118 79-200 144-263 (317)
97 3g39_A Variable lymphocyte rec 99.5 3.2E-14 1.1E-18 104.3 9.5 102 65-166 7-117 (170)
98 3cvr_A Invasion plasmid antige 99.5 1.3E-14 4.4E-19 125.1 8.2 117 59-193 35-157 (571)
99 4glp_A Monocyte differentiatio 99.5 7.6E-15 2.6E-19 117.3 6.3 114 79-194 145-269 (310)
100 2ifg_A High affinity nerve gro 99.5 5.2E-14 1.8E-18 113.9 10.7 101 85-188 14-116 (347)
101 1h6t_A Internalin B; cell adhe 99.5 7.7E-14 2.6E-18 110.7 11.2 112 80-201 91-202 (291)
102 1h6t_A Internalin B; cell adhe 99.5 1.4E-13 4.8E-18 109.2 12.1 114 79-202 68-181 (291)
103 1a9n_A U2A', U2A'; complex (nu 99.5 1.7E-14 5.8E-19 106.1 6.3 106 79-188 42-153 (176)
104 1h6u_A Internalin H; cell adhe 99.5 1.5E-13 5E-18 109.9 11.9 102 79-188 85-186 (308)
105 4fmz_A Internalin; leucine ric 99.5 8.3E-14 2.8E-18 112.5 10.5 116 79-202 221-336 (347)
106 1h6u_A Internalin H; cell adhe 99.5 1.5E-13 5.1E-18 109.8 11.7 114 79-202 63-176 (308)
107 1xeu_A Internalin C; cellular 99.5 1.4E-13 4.7E-18 107.7 11.2 113 79-202 63-175 (263)
108 4glp_A Monocyte differentiatio 99.5 1.3E-14 4.5E-19 115.9 5.4 96 102-198 144-247 (310)
109 1xeu_A Internalin C; cellular 99.5 1.4E-13 4.9E-18 107.7 11.0 113 79-202 41-153 (263)
110 2r9u_A Variable lymphocyte rec 99.5 2.2E-13 7.5E-18 100.2 9.9 95 105-202 14-108 (174)
111 1o6v_A Internalin A; bacterial 99.5 4.1E-13 1.4E-17 112.9 11.8 112 80-201 266-377 (466)
112 1m9s_A Internalin B; cell inva 99.5 3.4E-13 1.2E-17 117.1 11.3 114 79-202 87-200 (605)
113 1ds9_A Outer arm dynein; leuci 99.5 4E-16 1.4E-20 117.1 -6.5 118 79-202 48-177 (198)
114 2ast_B S-phase kinase-associat 99.4 1.6E-14 5.3E-19 116.2 2.0 122 80-201 119-249 (336)
115 1m9s_A Internalin B; cell inva 99.4 6E-13 2.1E-17 115.5 12.0 114 79-202 65-178 (605)
116 1ds9_A Outer arm dynein; leuci 99.4 4.5E-16 1.5E-20 116.8 -6.9 117 80-202 19-143 (198)
117 1dce_A Protein (RAB geranylger 99.4 3.3E-13 1.1E-17 116.4 9.8 94 104-202 442-536 (567)
118 2ast_B S-phase kinase-associat 99.4 2.2E-14 7.5E-19 115.3 2.0 122 80-201 94-224 (336)
119 4fmz_A Internalin; leucine ric 99.4 7.8E-13 2.7E-17 106.8 10.8 116 79-202 199-314 (347)
120 3bz5_A Internalin-J, INLJ; leu 99.4 1.4E-12 4.7E-17 109.8 11.6 101 79-191 64-164 (457)
121 3cvr_A Invasion plasmid antige 99.4 2.6E-13 8.8E-18 117.0 7.2 104 80-200 121-231 (571)
122 1o6v_A Internalin A; bacterial 99.4 1.4E-12 4.6E-17 109.7 11.0 112 80-201 244-355 (466)
123 2ifg_A High affinity nerve gro 99.4 1.7E-12 5.7E-17 105.0 9.1 99 66-165 7-117 (347)
124 2ca6_A RAN GTPase-activating p 99.4 9.8E-14 3.3E-18 113.9 1.8 91 99-189 183-288 (386)
125 4ay9_X Follicle-stimulating ho 99.3 2.6E-12 8.8E-17 104.3 9.2 101 66-166 8-119 (350)
126 3g06_A SSPH2 (leucine-rich rep 99.3 4.1E-13 1.4E-17 116.9 4.7 120 59-195 14-160 (622)
127 2ca6_A RAN GTPase-activating p 99.3 1.1E-13 3.8E-18 113.6 0.9 88 103-190 159-259 (386)
128 3bz5_A Internalin-J, INLJ; leu 99.3 5E-12 1.7E-16 106.3 10.5 100 79-189 148-247 (457)
129 1jl5_A Outer protein YOPM; leu 99.3 2.8E-12 9.4E-17 107.8 8.2 88 103-198 317-421 (454)
130 1jl5_A Outer protein YOPM; leu 99.3 1.2E-11 4E-16 104.0 11.1 109 79-201 131-239 (454)
131 3goz_A Leucine-rich repeat-con 99.3 7.6E-13 2.6E-17 107.9 2.6 116 80-195 52-187 (362)
132 3g06_A SSPH2 (leucine-rich rep 99.3 7.4E-12 2.5E-16 109.0 8.6 85 103-196 221-305 (622)
133 3goz_A Leucine-rich repeat-con 99.3 2.2E-12 7.4E-17 105.2 3.9 113 79-191 22-154 (362)
134 4ay9_X Follicle-stimulating ho 99.2 2.5E-11 8.6E-16 98.4 8.7 110 83-195 13-124 (350)
135 1z7x_W Ribonuclease inhibitor; 99.2 7.2E-13 2.5E-17 110.7 -1.1 123 79-201 256-400 (461)
136 1z7x_W Ribonuclease inhibitor; 99.1 2.3E-12 7.8E-17 107.7 -1.6 112 79-190 284-413 (461)
137 3rw6_A Nuclear RNA export fact 99.1 7.5E-12 2.6E-16 98.0 -1.8 67 124-192 167-237 (267)
138 3un9_A NLR family member X1; l 99.0 1.3E-10 4.3E-15 95.3 1.9 111 80-190 127-254 (372)
139 3un9_A NLR family member X1; l 98.9 1.3E-10 4.5E-15 95.2 0.2 111 79-189 101-225 (372)
140 3ogk_B Coronatine-insensitive 98.8 1.3E-09 4.5E-14 93.6 2.0 35 167-201 285-320 (592)
141 3ogk_B Coronatine-insensitive 98.8 4.3E-10 1.5E-14 96.7 -2.1 122 79-201 112-245 (592)
142 3rw6_A Nuclear RNA export fact 98.8 7.6E-09 2.6E-13 80.9 5.2 80 100-181 167-257 (267)
143 1io0_A Tropomodulin; LRR prote 98.7 4E-09 1.4E-13 78.0 1.7 110 79-188 36-164 (185)
144 3sb4_A Hypothetical leucine ri 98.7 7.7E-08 2.6E-12 77.1 8.9 99 102-202 225-324 (329)
145 2p1m_B Transport inhibitor res 98.6 3.9E-09 1.3E-13 90.7 -0.2 122 79-201 105-237 (594)
146 3sb4_A Hypothetical leucine ri 98.6 1.3E-07 4.3E-12 75.9 8.6 102 79-182 226-328 (329)
147 2p1m_B Transport inhibitor res 98.5 6.7E-09 2.3E-13 89.2 -1.7 86 102-188 431-519 (594)
148 1io0_A Tropomodulin; LRR prote 98.4 5E-08 1.7E-12 72.1 0.9 96 95-190 28-138 (185)
149 3e4g_A ATP synthase subunit S, 98.2 6.3E-07 2.2E-11 65.6 3.6 84 79-162 61-150 (176)
150 2ra8_A Uncharacterized protein 98.2 6E-07 2E-11 73.2 3.4 108 79-189 172-293 (362)
151 2ra8_A Uncharacterized protein 98.2 2.4E-07 8.1E-12 75.6 0.5 111 79-189 193-321 (362)
152 3e4g_A ATP synthase subunit S, 98.2 1.3E-06 4.6E-11 63.8 4.2 94 95-188 53-153 (176)
153 4fdw_A Leucine rich hypothetic 98.0 4E-05 1.4E-09 63.2 9.5 115 80-198 249-368 (401)
154 4fdw_A Leucine rich hypothetic 97.8 0.00013 4.4E-09 60.1 10.7 55 146-201 266-325 (401)
155 3rfe_A Platelet glycoprotein I 97.2 0.00073 2.5E-08 46.7 6.2 56 83-140 12-68 (130)
156 3rfe_A Platelet glycoprotein I 97.2 0.00076 2.6E-08 46.6 6.0 57 106-164 11-68 (130)
157 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00025 8.6E-09 52.6 2.4 110 79-188 41-170 (197)
158 4h09_A Hypothetical leucine ri 96.9 0.007 2.4E-07 48.8 9.8 85 97-184 257-342 (379)
159 4fs7_A Uncharacterized protein 96.8 0.0027 9.3E-08 51.7 7.1 100 98-202 292-391 (394)
160 4gt6_A Cell surface protein; l 96.8 0.012 4E-07 48.0 10.4 86 98-187 283-369 (394)
161 4h09_A Hypothetical leucine ri 96.7 0.013 4.5E-07 47.2 10.4 103 97-202 234-336 (379)
162 1pgv_A TMD-1, tropomodulin TMD 96.7 0.0012 4E-08 49.0 3.3 88 98-185 36-136 (197)
163 4gt6_A Cell surface protein; l 96.5 0.02 6.8E-07 46.5 9.8 101 97-202 259-360 (394)
164 4fs7_A Uncharacterized protein 96.3 0.03 1E-06 45.4 10.0 104 79-185 71-195 (394)
165 2lz0_A Uncharacterized protein 42.9 48 0.0016 21.0 4.7 37 98-135 15-51 (100)
166 2lz0_A Uncharacterized protein 39.9 69 0.0024 20.2 6.2 47 114-161 7-53 (100)
167 3ox7_P MH027; urokinase-type p 37.1 8.1 0.00028 17.0 0.2 9 65-73 6-14 (23)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=1.8e-30 Score=208.86 Aligned_cols=168 Identities=32% Similarity=0.556 Sum_probs=155.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc--cccceeCCCC--CcEEEEEcCCCCCcc--ccCccccCCCCCcE
Q 035702 34 QTNETDRLALLTIKSQLHDPSGVTSSWNNTINLCL--WTGVTCGHRH--QRVTELNLSSQRIGG--ILSPYVGNLSFLRY 107 (202)
Q Consensus 34 ~~~~~~~~~L~~~~~~~~~~~~~~~~W~~~~~~c~--w~gv~c~~~~--~~v~~L~l~~~~l~~--~~~~~l~~l~~L~~ 107 (202)
.|.++|++||++||.++.+|. .+.+|..+.++|. |.||.|+... ++|++|+++++.+.+ .+|+.+..+++|++
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~ 80 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF 80 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCe
Confidence 478999999999999998776 6789988889998 9999998654 789999999999999 89999999999999
Q ss_pred EEccC-CcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccc
Q 035702 108 INLAD-NGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNY 186 (202)
Q Consensus 108 L~l~~-n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~ 186 (202)
|++++ |.+.+.+|..++.+++|++|++++|.+++.+|..+.++++|++|++++|.+++.+|..+..+++|++|++++|+
T Consensus 81 L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 160 (313)
T 1ogq_A 81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160 (313)
T ss_dssp EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred eeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc
Confidence 99995 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccChhccCCC-CCC
Q 035702 187 LTRQLPDFIGNLS-ALE 202 (202)
Q Consensus 187 l~g~iP~~~~~l~-~L~ 202 (202)
++|.+|..+++++ +|+
T Consensus 161 l~~~~p~~l~~l~~~L~ 177 (313)
T 1ogq_A 161 ISGAIPDSYGSFSKLFT 177 (313)
T ss_dssp CEEECCGGGGCCCTTCC
T ss_pred ccCcCCHHHhhhhhcCc
Confidence 9999999998887 654
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=8.6e-27 Score=203.66 Aligned_cols=162 Identities=24% Similarity=0.327 Sum_probs=144.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCC-C-------CCCCCCCCCCcc---ccceeCCCCCcEEEEEcCCCCCccccCccccCCC
Q 035702 35 TNETDRLALLTIKSQLHDPSGV-T-------SSWNNTINLCLW---TGVTCGHRHQRVTELNLSSQRIGGILSPYVGNLS 103 (202)
Q Consensus 35 ~~~~~~~~L~~~~~~~~~~~~~-~-------~~W~~~~~~c~w---~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~ 103 (202)
...+|+.||.++|.++.++.+. . .+|+.++++|.| +||+|+.. ++|+.|+|+++++.|.+|+.++.++
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~ 105 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLT 105 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCT
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCc
Confidence 3457999999999998755332 2 379999999999 99999865 8999999999999999999999999
Q ss_pred CCcEEEccCCc---------------------------------------------------------------------
Q 035702 104 FLRYINLADNG--------------------------------------------------------------------- 114 (202)
Q Consensus 104 ~L~~L~l~~n~--------------------------------------------------------------------- 114 (202)
+|++|++++|.
T Consensus 106 ~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~ 185 (636)
T 4eco_A 106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD 185 (636)
T ss_dssp TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCT
T ss_pred cceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhh
Confidence 99999999883
Q ss_pred ---------CcccCchhccCCCCCCeEeCCCCcCccC-----------------cChhcc--CCCCCcEEEeecccCccc
Q 035702 115 ---------FHGEIPQEIGNLLRLEKLALPNNSFSGT-----------------IPTNLS--RCSNLIYFHVGNNKLEGQ 166 (202)
Q Consensus 115 ---------l~~~~p~~~~~l~~L~~L~ls~n~l~~~-----------------~p~~l~--~l~~L~~L~l~~n~~~g~ 166 (202)
++| +|+.++++++|++|++++|.+++. +|..++ ++++|++|++++|.+.|.
T Consensus 186 l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~ 264 (636)
T 4eco_A 186 TQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK 264 (636)
T ss_dssp TTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS
T ss_pred hhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc
Confidence 445 788899999999999999999986 999999 999999999999999999
Q ss_pred CChhccCCCCCceeeccccc-ccc-ccChhccCC
Q 035702 167 IPKEIGSLLKLQTLALYYNY-LTR-QLPDFIGNL 198 (202)
Q Consensus 167 ~p~~~~~l~~L~~L~l~~N~-l~g-~iP~~~~~l 198 (202)
+|..+.++++|++|++++|+ ++| .+|..++++
T Consensus 265 ~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L 298 (636)
T 4eco_A 265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQAL 298 (636)
T ss_dssp CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHH
T ss_pred ChHHHhcCCCCCEEECcCCCCCccccchHHHHhh
Confidence 99999999999999999998 998 899887665
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.94 E-value=1.4e-26 Score=206.14 Aligned_cols=158 Identities=21% Similarity=0.299 Sum_probs=106.2
Q ss_pred cCCCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCccccceeCCCCCcEEEEEcCCCCCccc---cCcc----------
Q 035702 32 VGQTNETDRLALLTIKSQLHDPSGVTSSWNNTINLCLWTGVTCGHRHQRVTELNLSSQRIGGI---LSPY---------- 98 (202)
Q Consensus 32 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~W~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~l~~~---~~~~---------- 98 (202)
+....++|+.||++||+++.+|. .+++|..+++||.|+||+|+ .++|+.|+++++.+.|. +++.
T Consensus 6 ~~~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l 82 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL 82 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEE
T ss_pred cccCCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCccccc
Confidence 34457789999999999998887 88999988899999999998 38999999999999987 5554
Q ss_pred -------------ccCCCCCcEEEccCCcCcccCch--hccCCCCCCeEeCCCCcCccCcChhc-cCCCCCcEEEeeccc
Q 035702 99 -------------VGNLSFLRYINLADNGFHGEIPQ--EIGNLLRLEKLALPNNSFSGTIPTNL-SRCSNLIYFHVGNNK 162 (202)
Q Consensus 99 -------------l~~l~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~ls~n~l~~~~p~~l-~~l~~L~~L~l~~n~ 162 (202)
+..+++|++|++++|.++|.+|. .++.+++|++|++++|.+++..|..+ .++++|++|++++|.
T Consensus 83 ~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 162 (768)
T 3rgz_A 83 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162 (768)
T ss_dssp ECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC
T ss_pred CCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc
Confidence 44555555555555555555555 55555555555555555555555443 455555555555555
Q ss_pred CcccCChh---ccCCCCCceeeccccccccccC
Q 035702 163 LEGQIPKE---IGSLLKLQTLALYYNYLTRQLP 192 (202)
Q Consensus 163 ~~g~~p~~---~~~l~~L~~L~l~~N~l~g~iP 192 (202)
+++..|.. +.++++|++|++++|.+++.+|
T Consensus 163 l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 195 (768)
T 3rgz_A 163 ISGANVVGWVLSDGCGELKHLAISGNKISGDVD 195 (768)
T ss_dssp CEEETHHHHHHTTCCTTCCEEECCSSEEESCCB
T ss_pred cCCcCChhhhhhccCCCCCEEECCCCcccccCC
Confidence 55544443 4555555555555555555444
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=1e-25 Score=202.18 Aligned_cols=160 Identities=24% Similarity=0.289 Sum_probs=140.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCCCCCCCCCC-----CC--Ccc------------ccceeCCCCCcEEEEEcCCCCCccc
Q 035702 34 QTNETDRLALLTIKSQLHDPSGVTSSWNNTI-----NL--CLW------------TGVTCGHRHQRVTELNLSSQRIGGI 94 (202)
Q Consensus 34 ~~~~~~~~~L~~~~~~~~~~~~~~~~W~~~~-----~~--c~w------------~gv~c~~~~~~v~~L~l~~~~l~~~ 94 (202)
.+..+|+.||++||.++.+| +|+.+. ++ |.| .||.|+. .++|+.|+|+++++.|.
T Consensus 265 ~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~ 338 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGR 338 (876)
T ss_dssp CHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEE
T ss_pred ccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCc
Confidence 34568999999999999766 565443 45 999 9999986 38999999999999999
Q ss_pred cCccccCCCCCcEEEc-cCCcCccc-------------------------------------------------------
Q 035702 95 LSPYVGNLSFLRYINL-ADNGFHGE------------------------------------------------------- 118 (202)
Q Consensus 95 ~~~~l~~l~~L~~L~l-~~n~l~~~------------------------------------------------------- 118 (202)
+|+.++.+++|++|++ ++|.++|.
T Consensus 339 ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~ 418 (876)
T 4ecn_A 339 VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIK 418 (876)
T ss_dssp ECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCC
T ss_pred CchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccc
Confidence 9999999999999999 77765444
Q ss_pred ---------------------CchhccCCCCCCeEeCCCCcCcc-----------------CcChhcc--CCCCCcEEEe
Q 035702 119 ---------------------IPQEIGNLLRLEKLALPNNSFSG-----------------TIPTNLS--RCSNLIYFHV 158 (202)
Q Consensus 119 ---------------------~p~~~~~l~~L~~L~ls~n~l~~-----------------~~p~~l~--~l~~L~~L~l 158 (202)
+|..++++++|++|++++|.+++ .+|..++ ++++|++|++
T Consensus 419 ~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~L 498 (876)
T 4ecn_A 419 KDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVEL 498 (876)
T ss_dssp CCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEE
T ss_pred cccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEEC
Confidence 78889999999999999999998 3899988 9999999999
Q ss_pred ecccCcccCChhccCCCCCceeeccccc-ccc-ccChhccCCC
Q 035702 159 GNNKLEGQIPKEIGSLLKLQTLALYYNY-LTR-QLPDFIGNLS 199 (202)
Q Consensus 159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~-l~g-~iP~~~~~l~ 199 (202)
++|.+.+.+|..+.++++|+.|++++|+ ++| .+|..+++++
T Consensus 499 s~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~ 541 (876)
T 4ecn_A 499 YNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLA 541 (876)
T ss_dssp ESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhh
Confidence 9999999999999999999999999998 998 8888776544
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=1.8e-24 Score=174.91 Aligned_cols=166 Identities=22% Similarity=0.320 Sum_probs=132.8
Q ss_pred CCCCHHHHHHHHHHHHhCC-CCCCCCCCC----CCCCCCCccccceeCC--------CCCcEEEEEcCCCCCccccCccc
Q 035702 33 GQTNETDRLALLTIKSQLH-DPSGVTSSW----NNTINLCLWTGVTCGH--------RHQRVTELNLSSQRIGGILSPYV 99 (202)
Q Consensus 33 ~~~~~~~~~~L~~~~~~~~-~~~~~~~~W----~~~~~~c~w~gv~c~~--------~~~~v~~L~l~~~~l~~~~~~~l 99 (202)
.....+|+.+|++||..+. ++.+....| ....++|.|.|+.|.. ...+|+.|++++|.++. +|+.+
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~-lp~~l 100 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQ-FPDQA 100 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSS-CCSCG
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCchh-cChhh
Confidence 3456688999999999874 666667789 4567899999999942 23678999999999884 78778
Q ss_pred cCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCChhccC------
Q 035702 100 GNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGS------ 173 (202)
Q Consensus 100 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~------ 173 (202)
..+++|++|++++|.++ .+|..++.+++|++|++++|.++ .+|..+.++++|++|++++|++.+.+|..+..
T Consensus 101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~ 178 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178 (328)
T ss_dssp GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence 88999999999999988 88888888899999999999888 78888888888888888888777777766543
Q ss_pred ---CCCCceeeccccccccccChhccCCCCCC
Q 035702 174 ---LLKLQTLALYYNYLTRQLPDFIGNLSALE 202 (202)
Q Consensus 174 ---l~~L~~L~l~~N~l~g~iP~~~~~l~~L~ 202 (202)
+++|++|++++|.++ .+|..++++++|+
T Consensus 179 ~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~ 209 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLK 209 (328)
T ss_dssp EEESTTCCEEEEEEECCC-CCCGGGGGCTTCC
T ss_pred hccCCCCCEEECcCCCcC-cchHhhcCCCCCC
Confidence 777777777777777 7777777766654
No 6
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.87 E-value=2.3e-21 Score=149.16 Aligned_cols=145 Identities=23% Similarity=0.226 Sum_probs=124.9
Q ss_pred CCCCCCCCCCCccccceeCCCC---------CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCC
Q 035702 57 TSSWNNTINLCLWTGVTCGHRH---------QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLL 127 (202)
Q Consensus 57 ~~~W~~~~~~c~w~gv~c~~~~---------~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 127 (202)
...|....+.|+|++|.|.... ..++.|++++|.+++..+..+..+++|++|++++|.++...+..+..++
T Consensus 9 ~~~~~~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~ 88 (229)
T 3e6j_A 9 HSAACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT 88 (229)
T ss_dssp --CCCCTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhccCCCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCC
Confidence 3456667789999999997532 5689999999999998888899999999999999999855556678999
Q ss_pred CCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702 128 RLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202 (202)
Q Consensus 128 ~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~ 202 (202)
+|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|+
T Consensus 89 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 162 (229)
T 3e6j_A 89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162 (229)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence 9999999999999655566789999999999999999 8899999999999999999999965556788887764
No 7
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=4.2e-20 Score=139.69 Aligned_cols=138 Identities=20% Similarity=0.250 Sum_probs=116.3
Q ss_pred CCCccccceeCCCC---------CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCC
Q 035702 65 NLCLWTGVTCGHRH---------QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALP 135 (202)
Q Consensus 65 ~~c~w~gv~c~~~~---------~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls 135 (202)
..|.|+++.|.... .+++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 5 C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 5 CSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence 45899999997532 468999999999998666678899999999999999996656667899999999999
Q ss_pred CCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702 136 NNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202 (202)
Q Consensus 136 ~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~ 202 (202)
+|.+++..+..+.++++|++|++++|++++..+..+..+++|++|++++|.+++..+..+.++++|+
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 151 (208)
T 2o6s_A 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 151 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCcc
Confidence 9999955555678999999999999999965555688999999999999999966556678777764
No 8
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.83 E-value=4.1e-20 Score=141.32 Aligned_cols=138 Identities=22% Similarity=0.250 Sum_probs=120.4
Q ss_pred CCCccccceeCCCC---------CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCC
Q 035702 65 NLCLWTGVTCGHRH---------QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALP 135 (202)
Q Consensus 65 ~~c~w~gv~c~~~~---------~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls 135 (202)
..|.|..+.|.... ..++.|++++|.+++..+..+..+++|++|++++|.+++..|..|..+++|++|+++
T Consensus 9 C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 9 CTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp SEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 45788888886432 468999999999999777789999999999999999998889999999999999999
Q ss_pred CCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702 136 NNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202 (202)
Q Consensus 136 ~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~ 202 (202)
+|.++...+..+.++++|++|++++|++++..|..+..+++|++|++++|++++..+..|..+++|+
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 155 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCC
Confidence 9999944334578999999999999999987788899999999999999999977667788887764
No 9
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=7.5e-20 Score=139.88 Aligned_cols=138 Identities=20% Similarity=0.238 Sum_probs=117.9
Q ss_pred CCCccccceeCCCC---------CcEEEEEcCCCCCccccC-ccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeC
Q 035702 65 NLCLWTGVTCGHRH---------QRVTELNLSSQRIGGILS-PYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLAL 134 (202)
Q Consensus 65 ~~c~w~gv~c~~~~---------~~v~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 134 (202)
..|.|..+.|.... ..++.|++++|.+++..+ ..+..+++|++|++++|.+++..+..|..+++|++|++
T Consensus 9 C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 9 CRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 44678777775431 357889999999998655 34789999999999999999777778999999999999
Q ss_pred CCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702 135 PNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202 (202)
Q Consensus 135 s~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~ 202 (202)
++|.+++..+..+.++++|++|++++|++++..|..+..+++|++|++++|++++..|..|..+++|+
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 156 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLS 156 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCC
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCC
Confidence 99999977677789999999999999999987788899999999999999999988788898888774
No 10
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.81 E-value=2.5e-19 Score=139.31 Aligned_cols=122 Identities=24% Similarity=0.254 Sum_probs=62.9
Q ss_pred cEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEee
Q 035702 80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVG 159 (202)
Q Consensus 80 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~ 159 (202)
+++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 60 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 139 (251)
T 3m19_A 60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN 139 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECc
Confidence 44455555555544444444455555555555555553333444555555555555555553333334555556666666
Q ss_pred cccCcccCChhccCCCCCceeeccccccccccChhccCCCCC
Q 035702 160 NNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201 (202)
Q Consensus 160 ~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L 201 (202)
+|++++..+..+..+++|++|++++|++++..|..+.++++|
T Consensus 140 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 181 (251)
T 3m19_A 140 TNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL 181 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred CCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCC
Confidence 665553333345556666666666666654444455555544
No 11
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.80 E-value=2.6e-19 Score=134.08 Aligned_cols=128 Identities=23% Similarity=0.284 Sum_probs=112.8
Q ss_pred CCCccccceeCCCC---------CcEEEEEcCCCCCccccCc-cccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeC
Q 035702 65 NLCLWTGVTCGHRH---------QRVTELNLSSQRIGGILSP-YVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLAL 134 (202)
Q Consensus 65 ~~c~w~gv~c~~~~---------~~v~~L~l~~~~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 134 (202)
..|.|+.+.|.... ..++.|++++|.+++..+. .+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 6 C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 6 CHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp SEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 44778888886431 4789999999999986554 4889999999999999999888999999999999999
Q ss_pred CCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccccccccC
Q 035702 135 PNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLP 192 (202)
Q Consensus 135 s~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP 192 (202)
++|.+++..|..+.++++|++|++++|++++..|..+..+++|++|++++|.+++..+
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 9999997777779999999999999999998889999999999999999999987655
No 12
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.79 E-value=1.1e-18 Score=137.11 Aligned_cols=122 Identities=25% Similarity=0.305 Sum_probs=77.0
Q ss_pred cEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEee
Q 035702 80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVG 159 (202)
Q Consensus 80 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~ 159 (202)
.++.|++++|.+++..+..+..+++|++|++++|.++...+..+..+++|++|++++|.+++..+..+.++++|++|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 46778888888777555567777788888888877774434445667777777777777764434445666666666666
Q ss_pred cccCcccCChhccCCCCCceeeccccccccccChhccCCCCC
Q 035702 160 NNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201 (202)
Q Consensus 160 ~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L 201 (202)
+|.+++..+..+..+++|++|++++|.+++..+..|..+++|
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 159 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc
Confidence 666664444445556666666666666653333334444444
No 13
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.79 E-value=3.4e-19 Score=158.64 Aligned_cols=77 Identities=30% Similarity=0.489 Sum_probs=56.1
Q ss_pred CCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702 126 LLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202 (202)
Q Consensus 126 l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~ 202 (202)
+++|++|++++|.++|.+|..++++++|+.|++++|+++|.+|..++++++|+.||+++|+++|.+|..++++++|+
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 707 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence 34566677777777777777777777777777777777777777777777777777777777777777777776653
No 14
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.78 E-value=1e-18 Score=128.84 Aligned_cols=128 Identities=20% Similarity=0.226 Sum_probs=109.2
Q ss_pred CCCccccceeCCCC---------CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCC
Q 035702 65 NLCLWTGVTCGHRH---------QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALP 135 (202)
Q Consensus 65 ~~c~w~gv~c~~~~---------~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls 135 (202)
..|.|+++.|.... ..++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 5 C~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp CEEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 45789999996432 578999999999998666678899999999999999996666668899999999999
Q ss_pred CCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccccccccC
Q 035702 136 NNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLP 192 (202)
Q Consensus 136 ~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP 192 (202)
+|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..|
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999996655667899999999999999995444456889999999999999997665
No 15
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.77 E-value=3.6e-19 Score=142.85 Aligned_cols=121 Identities=26% Similarity=0.486 Sum_probs=107.0
Q ss_pred CcEEEEEcCC-CCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEE
Q 035702 79 QRVTELNLSS-QRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFH 157 (202)
Q Consensus 79 ~~v~~L~l~~-~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ 157 (202)
.+++.|++++ |.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 155 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence 5788899995 888888888899999999999999999988998899999999999999999988898899999999999
Q ss_pred eecccCcccCChhccCCC-CCceeeccccccccccChhccCCC
Q 035702 158 VGNNKLEGQIPKEIGSLL-KLQTLALYYNYLTRQLPDFIGNLS 199 (202)
Q Consensus 158 l~~n~~~g~~p~~~~~l~-~L~~L~l~~N~l~g~iP~~~~~l~ 199 (202)
+++|.++|.+|..+..++ +|++|++++|.+++.+|..+..++
T Consensus 156 L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~ 198 (313)
T 1ogq_A 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN 198 (313)
T ss_dssp CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC
T ss_pred CcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc
Confidence 999999888888888887 889999999888888888777654
No 16
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.77 E-value=1.1e-18 Score=141.04 Aligned_cols=122 Identities=21% Similarity=0.235 Sum_probs=101.2
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
.+++.|++++|.++ .+|..+..+++|++|++++|.++ .+|+.+..+++|++|++++|.+.+.+|..+.++++|++|++
T Consensus 183 ~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L 260 (328)
T 4fcg_A 183 VNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260 (328)
T ss_dssp TTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred CCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence 45666777777776 46677778888888888888888 46667888888888888888888888888888899999999
Q ss_pred ecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702 159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202 (202)
Q Consensus 159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~ 202 (202)
++|.+.+.+|..+.++++|++|++++|++.+.+|..++++++|+
T Consensus 261 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~ 304 (328)
T 4fcg_A 261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304 (328)
T ss_dssp TTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred CCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence 99888888888888899999999999988889999888888764
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.76 E-value=3.4e-18 Score=147.83 Aligned_cols=124 Identities=22% Similarity=0.218 Sum_probs=108.6
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
..+++|+|++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 47899999999999977778999999999999999999777778999999999999999999544467899999999999
Q ss_pred ecccCcccCChhccCCCCCceeecccccccc-ccChhccCCCCCC
Q 035702 159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTR-QLPDFIGNLSALE 202 (202)
Q Consensus 159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g-~iP~~~~~l~~L~ 202 (202)
++|++++..+..++++++|++|++++|.+++ .+|..++++++|+
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 176 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 176 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhh
Confidence 9999996545568999999999999999974 4678888888764
No 18
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.76 E-value=8.6e-18 Score=130.59 Aligned_cols=124 Identities=22% Similarity=0.251 Sum_probs=99.7
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
..++.|++++|++.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 46788888888888877777888888888888888888777777888888888888888888655566788888888888
Q ss_pred ecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702 159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202 (202)
Q Consensus 159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~ 202 (202)
++|++++..+..+..+++|++|++++|++++..|..|.++++|+
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 158 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCC
Confidence 88888854445567888888888888888855555677777764
No 19
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.76 E-value=1.3e-18 Score=124.85 Aligned_cols=122 Identities=24% Similarity=0.365 Sum_probs=107.8
Q ss_pred CcEEEEEcCCCCCc-cccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEE
Q 035702 79 QRVTELNLSSQRIG-GILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFH 157 (202)
Q Consensus 79 ~~v~~L~l~~~~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ 157 (202)
.+++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 56899999999998 77888889999999999999999965 6789999999999999999977888888899999999
Q ss_pred eecccCccc-CChhccCCCCCceeeccccccccccC---hhccCCCCCC
Q 035702 158 VGNNKLEGQ-IPKEIGSLLKLQTLALYYNYLTRQLP---DFIGNLSALE 202 (202)
Q Consensus 158 l~~n~~~g~-~p~~~~~l~~L~~L~l~~N~l~g~iP---~~~~~l~~L~ 202 (202)
+++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~ 143 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT 143 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcc
Confidence 999999952 34788999999999999999996555 4788888775
No 20
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.75 E-value=1.3e-17 Score=131.14 Aligned_cols=124 Identities=20% Similarity=0.258 Sum_probs=98.5
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
.+++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 85 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 164 (272)
T 3rfs_A 85 TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL 164 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEEC
Confidence 57888888888888766666788888888888888888666666788888888888888888555556788888888888
Q ss_pred ecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702 159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202 (202)
Q Consensus 159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~ 202 (202)
++|++++..+..+..+++|++|++++|++++..|..+.++++|+
T Consensus 165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (272)
T 3rfs_A 165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 208 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCC
Confidence 88888865555677888888888888888877666677777764
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.75 E-value=3.8e-18 Score=142.74 Aligned_cols=137 Identities=20% Similarity=0.240 Sum_probs=110.8
Q ss_pred CCcccc--ceeCCCC--------CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccC-chhccCCCCCCeEeC
Q 035702 66 LCLWTG--VTCGHRH--------QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEI-PQEIGNLLRLEKLAL 134 (202)
Q Consensus 66 ~c~w~g--v~c~~~~--------~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~l 134 (202)
.|.|.+ +.|.... .++++|++++|.+++..|..+..+++|++|++++|.+.+.+ +..+..+++|++|++
T Consensus 7 ~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 7 ECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86 (455)
T ss_dssp CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred eeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence 455554 6665432 56899999999999877888999999999999999887665 456888999999999
Q ss_pred CCCcCccCcChhccCCCCCcEEEeecccCcccCChh--ccCCCCCceeeccccccccccChh-ccCCCCCC
Q 035702 135 PNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKE--IGSLLKLQTLALYYNYLTRQLPDF-IGNLSALE 202 (202)
Q Consensus 135 s~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~--~~~l~~L~~L~l~~N~l~g~iP~~-~~~l~~L~ 202 (202)
++|.+++..|..+.++++|++|++++|.+++.+|.. +..+++|++|++++|.+++..|.. +.++++|+
T Consensus 87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 157 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH 157 (455)
T ss_dssp TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCC
T ss_pred CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCccc
Confidence 999998777888889999999999999988755554 788889999999999988777765 67777764
No 22
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.75 E-value=2.7e-18 Score=146.82 Aligned_cols=135 Identities=22% Similarity=0.215 Sum_probs=97.3
Q ss_pred CCccccceeCCC-----------CCcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeC
Q 035702 66 LCLWTGVTCGHR-----------HQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLAL 134 (202)
Q Consensus 66 ~c~w~gv~c~~~-----------~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 134 (202)
.|.|.|+ |+.. ..++++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 4777776 6422 146788888888888877777888888888888888888777777888888888888
Q ss_pred CCCcCccCcChhccCCCCCcEEEeecccCcc-cCChhccCCCCCceeeccccccccccC-hhccCCCCC
Q 035702 135 PNNSFSGTIPTNLSRCSNLIYFHVGNNKLEG-QIPKEIGSLLKLQTLALYYNYLTRQLP-DFIGNLSAL 201 (202)
Q Consensus 135 s~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g-~~p~~~~~l~~L~~L~l~~N~l~g~iP-~~~~~l~~L 201 (202)
++|.+++..|..++++++|++|++++|.+++ .+|..+.++++|++|++++|.+.+.+| ..+.++++|
T Consensus 82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L 150 (549)
T 2z81_A 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL 150 (549)
T ss_dssp TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccccc
Confidence 8888886555567788888888888887775 345566777777777777776444554 455555544
No 23
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.74 E-value=1.1e-17 Score=144.73 Aligned_cols=124 Identities=23% Similarity=0.301 Sum_probs=100.5
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
.++++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..++++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 56888888888888877777888888888888888888777777888888888888888888666888888888888888
Q ss_pred ecccCcccCChhccCCCCCceeecccccccc-ccChhccCCCCCC
Q 035702 159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTR-QLPDFIGNLSALE 202 (202)
Q Consensus 159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g-~iP~~~~~l~~L~ 202 (202)
++|.+++..|..++++++|++|++++|.+++ .+|..++++++|+
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~ 156 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCC
Confidence 8888875555678888888888888888875 5688888877764
No 24
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=1.2e-17 Score=124.95 Aligned_cols=118 Identities=24% Similarity=0.324 Sum_probs=105.4
Q ss_pred EEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCch-hccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeec
Q 035702 82 TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQ-EIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGN 160 (202)
Q Consensus 82 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~ 160 (202)
+.+++++++++. +|..+.. ++++|++++|.+++..+. .+..+++|++|++++|.+++..|..+.++++|++|++++
T Consensus 11 ~~l~~s~~~l~~-ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKE-IPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSS-CCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCc-CccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 578999999966 6765543 899999999999966554 488999999999999999988899999999999999999
Q ss_pred ccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702 161 NKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202 (202)
Q Consensus 161 n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~ 202 (202)
|++++..|..+..+++|++|++++|++++.+|..+..+++|+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 129 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence 999987777899999999999999999999999999888775
No 25
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.74 E-value=6.2e-18 Score=137.49 Aligned_cols=121 Identities=24% Similarity=0.251 Sum_probs=74.1
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcCh-hccCCCCCcEEE
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPT-NLSRCSNLIYFH 157 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~-~l~~l~~L~~L~ 157 (202)
.++++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++ +|. .+.++++|++|+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS-CCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc-CCHhHhCCCccCCEEE
Confidence 356777777777776544466677777777777777765556666666777777777776663 343 356666666666
Q ss_pred eecccCcccCCh--hccCCCCCceeeccccc-cccccChhccCCCCC
Q 035702 158 VGNNKLEGQIPK--EIGSLLKLQTLALYYNY-LTRQLPDFIGNLSAL 201 (202)
Q Consensus 158 l~~n~~~g~~p~--~~~~l~~L~~L~l~~N~-l~g~iP~~~~~l~~L 201 (202)
+++|+++ .+|. .+.++++|++|++++|+ +++..|..+.++++|
T Consensus 131 L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 176 (353)
T 2z80_A 131 LLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL 176 (353)
T ss_dssp CTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred CCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCC
Confidence 6666666 3443 45566666666666653 443334455554443
No 26
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.74 E-value=1.9e-17 Score=124.02 Aligned_cols=123 Identities=24% Similarity=0.279 Sum_probs=103.4
Q ss_pred CCccccceeCCC---------CCcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCC
Q 035702 66 LCLWTGVTCGHR---------HQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPN 136 (202)
Q Consensus 66 ~c~w~gv~c~~~---------~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~ 136 (202)
.|.|..+.|... ...++.|++++|.++. +|..+..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 9 ~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 9 TCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp EEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 456666667532 1578999999999985 778899999999999999999977777899999999999999
Q ss_pred CcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeecccccccc
Q 035702 137 NSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTR 189 (202)
Q Consensus 137 n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g 189 (202)
|.+++..|..+.++++|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 99997777789999999999999999995444468889999999999998863
No 27
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.74 E-value=6.9e-18 Score=123.32 Aligned_cols=120 Identities=23% Similarity=0.328 Sum_probs=74.5
Q ss_pred CcEEEEEcCCCCCc-cccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEE
Q 035702 79 QRVTELNLSSQRIG-GILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFH 157 (202)
Q Consensus 79 ~~v~~L~l~~~~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ 157 (202)
.+++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44666666666666 45566566666666666666666643 4566666666666666666655566555566666666
Q ss_pred eecccCcccCC--hhccCCCCCceeeccccccccccC---hhccCCCCC
Q 035702 158 VGNNKLEGQIP--KEIGSLLKLQTLALYYNYLTRQLP---DFIGNLSAL 201 (202)
Q Consensus 158 l~~n~~~g~~p--~~~~~l~~L~~L~l~~N~l~g~iP---~~~~~l~~L 201 (202)
+++|.+++ +| ..+..+++|++|++++|.+++..+ ..+..+++|
T Consensus 102 Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L 149 (168)
T 2ell_A 102 LSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQL 149 (168)
T ss_dssp CBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSC
T ss_pred ccCCccCc-chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccC
Confidence 66666663 33 456666666666666666663333 255555554
No 28
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.73 E-value=1.8e-17 Score=139.08 Aligned_cols=123 Identities=20% Similarity=0.132 Sum_probs=97.6
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
..++.|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+.++++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 57899999999999988888999999999999999999888888999999999999999999555566888999999999
Q ss_pred ecccCcccCChhccCCCCCceeeccccccccccCh-hccCCCCC
Q 035702 159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPD-FIGNLSAL 201 (202)
Q Consensus 159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~-~~~~l~~L 201 (202)
++|++++..+..+.++++|++|++++|+..+.+|. .|.++++|
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L 198 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL 198 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTC
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCC
Confidence 99999854444566677777777766433334443 35555544
No 29
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.73 E-value=4.2e-17 Score=128.77 Aligned_cols=124 Identities=23% Similarity=0.242 Sum_probs=76.3
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCc-CcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEE
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNG-FHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFH 157 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ 157 (202)
.+++.|++++|.+++..+..+..+++|++|++++|. ++...|..+..+++|++|++++|.+++..|..+.++++|++|+
T Consensus 56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 135 (285)
T 1ozn_A 56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEE
Confidence 456666666666666555556666666666666665 5544455566666666666666666655555666666677777
Q ss_pred eecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702 158 VGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202 (202)
Q Consensus 158 l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~ 202 (202)
+++|++++..+..+..+++|++|++++|++++..+..+.++++|+
T Consensus 136 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 180 (285)
T 1ozn_A 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180 (285)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccC
Confidence 776666644444466666777777777776644444466555553
No 30
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=2.8e-17 Score=134.24 Aligned_cols=129 Identities=19% Similarity=0.191 Sum_probs=95.0
Q ss_pred CCCccccceeCCCC---------CcEEEEEcCCCCCccccCcccc-CCCCCcEEEccCCcCcccCchhccCCCCCCeEeC
Q 035702 65 NLCLWTGVTCGHRH---------QRVTELNLSSQRIGGILSPYVG-NLSFLRYINLADNGFHGEIPQEIGNLLRLEKLAL 134 (202)
Q Consensus 65 ~~c~w~gv~c~~~~---------~~v~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 134 (202)
..|.+..+.|.... ..++.|++++|.+++..+..+. .+++|++|++++|.+++..+..|..+++|++|++
T Consensus 16 C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 16 CLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp CEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 33566666665321 3467888888888886666666 7888888888888888666667888888888888
Q ss_pred CCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccccccccChh
Q 035702 135 PNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDF 194 (202)
Q Consensus 135 s~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~ 194 (202)
++|.+++..+..+.++++|++|+|++|++++..|..+..+++|++|++++|.++ .+|..
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~ 154 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVE 154 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGG
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHH
Confidence 888887554556778888888888888887666677778888888888888887 45544
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.72 E-value=3.1e-17 Score=138.19 Aligned_cols=124 Identities=22% Similarity=0.226 Sum_probs=93.0
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
..++.|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|++++|.+++..+..+.++++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 46778888888888866777888888888888888888777777888888888888888887433345677788888888
Q ss_pred ecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702 159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202 (202)
Q Consensus 159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~ 202 (202)
++|.+++..|..+..+++|++|++++|.+++..|..|.++++|+
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 155 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE 155 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCC
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCC
Confidence 88877766666777777777777777777766666666666654
No 32
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.72 E-value=3e-17 Score=125.34 Aligned_cols=114 Identities=19% Similarity=0.182 Sum_probs=105.7
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
.+++.|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+.++++|++|++
T Consensus 57 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 136 (220)
T 2v70_A 57 PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSL 136 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEEC
T ss_pred CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEEC
Confidence 67999999999999977778999999999999999999777878999999999999999999877899999999999999
Q ss_pred ecccCcccCChhccCCCCCceeeccccccccccC
Q 035702 159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLP 192 (202)
Q Consensus 159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP 192 (202)
++|++++..|..+..+++|++|++++|.+++..+
T Consensus 137 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 137 YDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 9999998778899999999999999999986544
No 33
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=5.1e-17 Score=127.68 Aligned_cols=122 Identities=21% Similarity=0.219 Sum_probs=60.0
Q ss_pred cEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEee
Q 035702 80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVG 159 (202)
Q Consensus 80 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~ 159 (202)
.++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 35555555555555433345555555555555555554444445555555555555555554333444555555555555
Q ss_pred cccCcccCChhccCCCCCceeecccccccc-ccChhccCCCCC
Q 035702 160 NNKLEGQIPKEIGSLLKLQTLALYYNYLTR-QLPDFIGNLSAL 201 (202)
Q Consensus 160 ~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g-~iP~~~~~l~~L 201 (202)
+|.+++..+..+..+++|++|++++|.+++ .+|..+.++++|
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L 151 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC
Confidence 555543322234444555555555555443 234444444443
No 34
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.71 E-value=1.9e-17 Score=131.87 Aligned_cols=136 Identities=21% Similarity=0.204 Sum_probs=83.3
Q ss_pred CCCccccceeCCCC---------CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcc--cCchhccCCCCCCeEe
Q 035702 65 NLCLWTGVTCGHRH---------QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHG--EIPQEIGNLLRLEKLA 133 (202)
Q Consensus 65 ~~c~w~gv~c~~~~---------~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~ 133 (202)
..|.|+++.|.... ..+++|++++|.++...+..+..+++|++|++++|.++. ..+..+..+++|++|+
T Consensus 5 C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred CeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 45889999997532 478999999999987444457888999999999988872 2244555566666666
Q ss_pred CCCCcCccCcChhccCCCCCcEEEeecccCcccCC-hhccCCCCCceeeccccccccccChhccCCCCC
Q 035702 134 LPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIP-KEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201 (202)
Q Consensus 134 ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p-~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L 201 (202)
+++|.++ .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..|..+.++++|
T Consensus 85 Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 152 (306)
T 2z66_A 85 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 152 (306)
T ss_dssp CCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTC
T ss_pred CCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCC
Confidence 6666655 445445555555555555555543222 234444555555555555544444444444433
No 35
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.70 E-value=6.5e-17 Score=135.25 Aligned_cols=122 Identities=21% Similarity=0.206 Sum_probs=78.9
Q ss_pred cEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEee
Q 035702 80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVG 159 (202)
Q Consensus 80 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~ 159 (202)
.++.+++++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+.++++|++|+++
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 355 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence 46666666666666666666666667777776666666556666666666666666666665555666666666666666
Q ss_pred cccCcccCChhccCCCCCceeeccccccccccChhccCCCCC
Q 035702 160 NNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201 (202)
Q Consensus 160 ~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L 201 (202)
+|++++..|..+..+++|++|++++|++++..+..+..+++|
T Consensus 356 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 397 (455)
T 3v47_A 356 YNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSL 397 (455)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred CCcccccChhhccccccccEEECCCCccccCCHhHhccCCcc
Confidence 666665556666666666666666666664433445555554
No 36
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.70 E-value=1.5e-16 Score=124.97 Aligned_cols=122 Identities=22% Similarity=0.320 Sum_probs=108.1
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
.+++.|++++|.+.+ + +.+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|++
T Consensus 63 ~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 140 (272)
T 3rfs_A 63 PNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140 (272)
T ss_dssp TTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC
Confidence 679999999999988 3 47899999999999999999777777899999999999999999666667899999999999
Q ss_pred ecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702 159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202 (202)
Q Consensus 159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~ 202 (202)
++|.+++..+..+..+++|++|++++|++++..|..++++++|+
T Consensus 141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 184 (272)
T 3rfs_A 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLK 184 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCC
Confidence 99999966666678999999999999999977777778888775
No 37
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.70 E-value=1.8e-16 Score=125.15 Aligned_cols=124 Identities=19% Similarity=0.236 Sum_probs=92.9
Q ss_pred CcEEEEEcCCCC-CccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEE
Q 035702 79 QRVTELNLSSQR-IGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFH 157 (202)
Q Consensus 79 ~~v~~L~l~~~~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ 157 (202)
.+++.|++++|. +....+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+.++++|++|+
T Consensus 80 ~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 159 (285)
T 1ozn_A 80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF 159 (285)
T ss_dssp TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEE
Confidence 567788888886 6665566777788888888888888766677777788888888888888754445577788888888
Q ss_pred eecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702 158 VGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202 (202)
Q Consensus 158 l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~ 202 (202)
+++|++++..+..+..+++|++|++++|.+++..|..+.++++|+
T Consensus 160 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 204 (285)
T 1ozn_A 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCccccc
Confidence 888888754444577778888888888888877777777777664
No 38
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.69 E-value=3.3e-16 Score=117.26 Aligned_cols=117 Identities=24% Similarity=0.277 Sum_probs=102.4
Q ss_pred EEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecc
Q 035702 82 TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNN 161 (202)
Q Consensus 82 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n 161 (202)
+.+++++++++. +|..+. ++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..+.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCc-CCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 468999999986 666553 68999999999998 88889999999999999999999777788999999999999999
Q ss_pred cCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702 162 KLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202 (202)
Q Consensus 162 ~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~ 202 (202)
.+++..|..+..+++|++|++++|.+++..+..|..+++|+
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 129 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALS 129 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCcccc
Confidence 99977677899999999999999999955555687787764
No 39
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.69 E-value=9.4e-17 Score=144.26 Aligned_cols=134 Identities=21% Similarity=0.164 Sum_probs=100.4
Q ss_pred CccccceeCCCCCcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccC-chhccCCCCCCeEeCCCCcCccCcCh
Q 035702 67 CLWTGVTCGHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEI-PQEIGNLLRLEKLALPNNSFSGTIPT 145 (202)
Q Consensus 67 c~w~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~ls~n~l~~~~p~ 145 (202)
|.|+.|.+ ...+++.|++++|.+++..+..+..+++|++|++++|...+.+ |..|.++++|++|++++|.+++..|.
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 45666666 2267888888888888877777888888888888888655555 66777888888888888888766677
Q ss_pred hccCCCCCcEEEeecccCcccCChh--ccCCCCCceeeccccccccccC-hhccCCCCCC
Q 035702 146 NLSRCSNLIYFHVGNNKLEGQIPKE--IGSLLKLQTLALYYNYLTRQLP-DFIGNLSALE 202 (202)
Q Consensus 146 ~l~~l~~L~~L~l~~n~~~g~~p~~--~~~l~~L~~L~l~~N~l~g~iP-~~~~~l~~L~ 202 (202)
.+.++++|++|++++|.+++.+|.. +.++++|++|++++|.+++..| ..|+++++|+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~ 151 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK 151 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCC
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCC
Confidence 7888888888888888887666654 7777888888888888775544 4677777664
No 40
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=2.2e-17 Score=146.22 Aligned_cols=99 Identities=27% Similarity=0.413 Sum_probs=47.1
Q ss_pred ccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCc
Q 035702 99 VGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQ 178 (202)
Q Consensus 99 l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~ 178 (202)
+..++.|+.|++++|.+. .+|..+..+++|++|+|++|.++ .+|..+.++++|++|+|++|.++ .+|..++.+++|+
T Consensus 220 ~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLK 296 (727)
T ss_dssp --CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCS
T ss_pred hccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCC
Confidence 444444555555555444 44444444445555555555544 44444444555555555555544 4444444444555
Q ss_pred eeeccccccccccChhccCCCCC
Q 035702 179 TLALYYNYLTRQLPDFIGNLSAL 201 (202)
Q Consensus 179 ~L~l~~N~l~g~iP~~~~~l~~L 201 (202)
+|+|++|.++ .+|..|+++++|
T Consensus 297 ~L~L~~N~l~-~lp~~~~~l~~L 318 (727)
T 4b8c_D 297 YFYFFDNMVT-TLPWEFGNLCNL 318 (727)
T ss_dssp EEECCSSCCC-CCCSSTTSCTTC
T ss_pred EEECCCCCCC-ccChhhhcCCCc
Confidence 5555555444 444444444443
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=6.4e-17 Score=140.21 Aligned_cols=146 Identities=14% Similarity=0.088 Sum_probs=83.0
Q ss_pred CCCCCCCCCCCCc----cccceeCC------C----------CCcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcC
Q 035702 56 VTSSWNNTINLCL----WTGVTCGH------R----------HQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGF 115 (202)
Q Consensus 56 ~~~~W~~~~~~c~----w~gv~c~~------~----------~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l 115 (202)
....|.+..+||. |.++.|+. . ...++.++++++.+....+..+..+++|++|++++|.+
T Consensus 8 ~l~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l 87 (597)
T 3oja_B 8 NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 87 (597)
T ss_dssp ---CCCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCC
T ss_pred cccCCCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCC
Confidence 4567877766663 55544431 0 02345566666666553333455566666666666666
Q ss_pred cccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccccccccChhc
Q 035702 116 HGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFI 195 (202)
Q Consensus 116 ~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~ 195 (202)
++..|..|+.+++|++|++++|.+++..|..++++++|++|++++|.+++..+..+.++++|++|++++|.+++..|..|
T Consensus 88 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 167 (597)
T 3oja_B 88 EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 167 (597)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhh
Confidence 65555566666666666666666665555555666666666666666663222234566666666666666665555556
Q ss_pred cCCCCC
Q 035702 196 GNLSAL 201 (202)
Q Consensus 196 ~~l~~L 201 (202)
+++++|
T Consensus 168 ~~l~~L 173 (597)
T 3oja_B 168 QATTSL 173 (597)
T ss_dssp TTCTTC
T ss_pred hcCCcC
Confidence 655555
No 42
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=3.1e-16 Score=123.03 Aligned_cols=123 Identities=20% Similarity=0.227 Sum_probs=71.6
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
..++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 85 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 164 (270)
T 2o6q_A 85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL 164 (270)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEe
Confidence 34555566665555544444555666666666666666444455566666666666666666333334566666666666
Q ss_pred ecccCcccCChhccCCCCCceeeccccccccccChhccCCCCC
Q 035702 159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201 (202)
Q Consensus 159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L 201 (202)
++|.+++..+..+..+++|++|++++|++++..+..+..+++|
T Consensus 165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 207 (270)
T 2o6q_A 165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207 (270)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred cCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCC
Confidence 6666664433446666667777777776664433445555554
No 43
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.69 E-value=1.1e-16 Score=140.14 Aligned_cols=123 Identities=22% Similarity=0.231 Sum_probs=99.2
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcCh-hccCCCCCcEEE
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPT-NLSRCSNLIYFH 157 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~-~l~~l~~L~~L~ 157 (202)
.+++.|++++|.+++..+..+..+++|++|++++|.+++..|..++.+++|++|++++|.++ .+|. .++++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEE
Confidence 56888888888888866667888888888888888888777888888888888888888888 4454 588888888888
Q ss_pred eecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702 158 VGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202 (202)
Q Consensus 158 l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~ 202 (202)
+++|++++..|..+.++++|++|++++|.+++..|..++++++|+
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 148 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQ 148 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCC
Confidence 888888755556788888888888888888877777777777764
No 44
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.69 E-value=1.5e-16 Score=126.77 Aligned_cols=123 Identities=20% Similarity=0.220 Sum_probs=93.3
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcc-cCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEE
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHG-EIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFH 157 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ 157 (202)
.+++.|++++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 205 (306)
T 2z66_A 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205 (306)
T ss_dssp TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEE
Confidence 467777777777777666667777788888888887775 4677777788888888888888766677777888888888
Q ss_pred eecccCcccCChhccCCCCCceeeccccccccccChhccCCC-CC
Q 035702 158 VGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLS-AL 201 (202)
Q Consensus 158 l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~-~L 201 (202)
+++|.+++..+..+..+++|++|++++|++++..|..+..++ +|
T Consensus 206 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L 250 (306)
T 2z66_A 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 250 (306)
T ss_dssp CTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTC
T ss_pred CCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccC
Confidence 888888755555677788888888888888877777777663 54
No 45
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.69 E-value=1.4e-16 Score=137.77 Aligned_cols=111 Identities=17% Similarity=0.086 Sum_probs=79.1
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
..++.|++++|.+++..|..|..+++|++|++++|.+++..|..|..+++|++|++++|.+++..|..++++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 45777777777777766667777777777777777777666777777777777777777777666667777777777777
Q ss_pred ecccCcccCChhccCCCCCceeecccccccc
Q 035702 159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTR 189 (202)
Q Consensus 159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g 189 (202)
++|.+++..|..+.++++|++|++++|.+++
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~ 143 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISS 143 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccc
Confidence 7777764334556666666666666666664
No 46
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.68 E-value=4.7e-16 Score=123.46 Aligned_cols=121 Identities=22% Similarity=0.198 Sum_probs=89.7
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
.+++.|++++|.++. +|..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++
T Consensus 77 ~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155 (290)
T ss_dssp TTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CcCCEEECCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEEC
Confidence 567777777777764 6666777888888888888888665667778888888888888888554455677888888888
Q ss_pred ecccCcccCChhccCCCCCceeeccccccccccChhccCCCCC
Q 035702 159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201 (202)
Q Consensus 159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L 201 (202)
++|++++..+..+..+++|++|++++|+++ .+|..+..+.+|
T Consensus 156 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L 197 (290)
T 1p9a_G 156 ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197 (290)
T ss_dssp TTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCC
T ss_pred CCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccC
Confidence 888887433334567888888888888887 777777666554
No 47
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.68 E-value=1.5e-17 Score=145.17 Aligned_cols=121 Identities=18% Similarity=0.281 Sum_probs=105.7
Q ss_pred CcEEEEEcCCCCCccc-----------------cCcccc--CCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCc-
Q 035702 79 QRVTELNLSSQRIGGI-----------------LSPYVG--NLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNS- 138 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~-----------------~~~~l~--~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~- 138 (202)
.+++.|++++|.+++. +|+.+. .+++|++|++++|.+.+.+|..++++++|++|++++|.
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~ 285 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence 6789999999999986 888888 99999999999999999999999999999999999998
Q ss_pred Ccc-CcChhccCC------CCCcEEEeecccCcccCCh--hccCCCCCceeeccccccccccChhccCCCCC
Q 035702 139 FSG-TIPTNLSRC------SNLIYFHVGNNKLEGQIPK--EIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201 (202)
Q Consensus 139 l~~-~~p~~l~~l------~~L~~L~l~~n~~~g~~p~--~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L 201 (202)
++| .+|..++.+ ++|++|++++|+++ .+|. .+.++++|++|++++|.++|.+| .++++++|
T Consensus 286 l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L 355 (636)
T 4eco_A 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKL 355 (636)
T ss_dssp SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEE
T ss_pred CccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCC
Confidence 888 788888776 88999999999988 7888 88888899999999998888888 77666554
No 48
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.68 E-value=2.3e-16 Score=120.43 Aligned_cols=111 Identities=20% Similarity=0.193 Sum_probs=101.1
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
.+++.|++++|.+++..|..|..+++|++|++++|.++...+..+..+++|++|++++|.+++..|..+.++++|++|++
T Consensus 56 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 135 (220)
T 2v9t_B 56 KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSL 135 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEEC
Confidence 67999999999999988899999999999999999999555556789999999999999999888889999999999999
Q ss_pred ecccCcccCChhccCCCCCceeecccccccc
Q 035702 159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTR 189 (202)
Q Consensus 159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g 189 (202)
++|++++..+..+..+++|++|++++|.+..
T Consensus 136 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 136 YDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 9999996666678999999999999998863
No 49
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.68 E-value=4.6e-16 Score=123.54 Aligned_cols=119 Identities=24% Similarity=0.288 Sum_probs=69.7
Q ss_pred cEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEee
Q 035702 80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVG 159 (202)
Q Consensus 80 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~ 159 (202)
+++.|++++|.+++. +. ...+++|++|++++|.++ .+|..+..+++|++|++++|.+++..|..+.++++|++|+++
T Consensus 56 ~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~ 132 (290)
T 1p9a_G 56 RLTQLNLDRAELTKL-QV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132 (290)
T ss_dssp TCCEEECTTSCCCEE-EC-CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECT
T ss_pred CCCEEECCCCccCcc-cC-CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECC
Confidence 444445555444442 11 144555555555555555 455556666677777777777764444556677777777777
Q ss_pred cccCcccCChhccCCCCCceeeccccccccccChhccCCCCC
Q 035702 160 NNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201 (202)
Q Consensus 160 ~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L 201 (202)
+|++++..+..+..+++|+.|++++|++++..+..|.++++|
T Consensus 133 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L 174 (290)
T 1p9a_G 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174 (290)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTC
T ss_pred CCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCC
Confidence 777764444445667777777777777763333344555554
No 50
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.68 E-value=1.1e-16 Score=131.73 Aligned_cols=123 Identities=16% Similarity=0.192 Sum_probs=76.0
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
.+++.++++++.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+.++++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 34566666666666533333556666667777666666555556666666666666666666555555666666666666
Q ss_pred ecccCcccCChh-ccCCCCCceeeccccccccccChhccCCCCCC
Q 035702 159 GNNKLEGQIPKE-IGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202 (202)
Q Consensus 159 ~~n~~~g~~p~~-~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~ 202 (202)
++|+++ .+|.. +.++++|++|++++|.+++..|..+.++++|+
T Consensus 125 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 168 (390)
T 3o6n_A 125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 168 (390)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCC
T ss_pred CCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCC
Confidence 666666 44443 45666666666666666655555566665553
No 51
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.67 E-value=1.7e-16 Score=124.75 Aligned_cols=121 Identities=20% Similarity=0.199 Sum_probs=101.4
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
.+++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 131 (276)
T 2z62_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131 (276)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEEC
Confidence 67889999999998876677888999999999999998777788888999999999999998655557888999999999
Q ss_pred ecccCcc-cCChhccCCCCCceeeccccccccccChhccCCC
Q 035702 159 GNNKLEG-QIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLS 199 (202)
Q Consensus 159 ~~n~~~g-~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~ 199 (202)
++|.+++ .+|..+..+++|++|++++|++++..+..+..++
T Consensus 132 ~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 173 (276)
T 2z62_A 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173 (276)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred cCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh
Confidence 9999885 3688888999999999999999866555555443
No 52
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.67 E-value=2.3e-16 Score=121.46 Aligned_cols=121 Identities=17% Similarity=0.196 Sum_probs=97.7
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCc-CcccCchhccCCCCCCeEeCCC-CcCccCcChhccCCCCCcEE
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNG-FHGEIPQEIGNLLRLEKLALPN-NSFSGTIPTNLSRCSNLIYF 156 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~ls~-n~l~~~~p~~l~~l~~L~~L 156 (202)
..++.|++++|++++..+..+..+++|++|++++|. ++...+..+..+++|++|++++ |.+++..+..+.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 468899999999998666678899999999999996 8755556788899999999998 89985545678889999999
Q ss_pred EeecccCcccCChhccCCCCCc---eeecccc-ccccccChhccCCCCC
Q 035702 157 HVGNNKLEGQIPKEIGSLLKLQ---TLALYYN-YLTRQLPDFIGNLSAL 201 (202)
Q Consensus 157 ~l~~n~~~g~~p~~~~~l~~L~---~L~l~~N-~l~g~iP~~~~~l~~L 201 (202)
++++|++++ +|. +..+++|+ +|++++| .+++..+..|.++++|
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L 157 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE 157 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcc
Confidence 999998884 676 77777777 8888888 8875555557777665
No 53
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.67 E-value=5.5e-16 Score=124.74 Aligned_cols=135 Identities=21% Similarity=0.257 Sum_probs=110.0
Q ss_pred CCCccccceeCCC---------CCcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCC
Q 035702 65 NLCLWTGVTCGHR---------HQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALP 135 (202)
Q Consensus 65 ~~c~w~gv~c~~~---------~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls 135 (202)
..|.|+.+.|... ...++.|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus 29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 4578888888642 1568899999999999777789999999999999999998879999999999999999
Q ss_pred CCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccccc--cccChhccCCCCCC
Q 035702 136 NNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLT--RQLPDFIGNLSALE 202 (202)
Q Consensus 136 ~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~--g~iP~~~~~l~~L~ 202 (202)
+|.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.++ +..|..+.++++|+
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 174 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcC
Confidence 99998 7776654 68888888888888665566778888888888888875 35666677666654
No 54
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.67 E-value=1.5e-16 Score=137.50 Aligned_cols=122 Identities=20% Similarity=0.237 Sum_probs=110.5
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
.+++.|++++|.+++..|..|..+++|++|++++|.+++..|..|+++++|++|++++|.+++..+..++++++|++|++
T Consensus 56 ~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 135 (606)
T 3vq2_A 56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135 (606)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEEC
T ss_pred ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeC
Confidence 67999999999999987888999999999999999999888999999999999999999999666688999999999999
Q ss_pred ecccCcc-cCChhccCCCCCceeeccccccccccChhccCCCC
Q 035702 159 GNNKLEG-QIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSA 200 (202)
Q Consensus 159 ~~n~~~g-~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~ 200 (202)
++|.+++ .+|..+.++++|++|++++|++++..|..++.+++
T Consensus 136 ~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 178 (606)
T 3vq2_A 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178 (606)
T ss_dssp CSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHH
T ss_pred CCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhc
Confidence 9999986 67999999999999999999999877776665543
No 55
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.67 E-value=7.3e-16 Score=118.28 Aligned_cols=125 Identities=22% Similarity=0.288 Sum_probs=106.1
Q ss_pred cccceeCCCCCcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhcc
Q 035702 69 WTGVTCGHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLS 148 (202)
Q Consensus 69 w~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~ 148 (202)
|..-.|.. +.++.++++++. +|..+. ++|++|++++|.+++..|..+..+++|++|++++|.++...+..+.
T Consensus 14 ~~~~~Cs~-----~~v~c~~~~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~ 85 (229)
T 3e6j_A 14 PSQCSCSG-----TTVDCRSKRHAS-VPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD 85 (229)
T ss_dssp CTTCEEET-----TEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCCEEeC-----CEeEccCCCcCc-cCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcc
Confidence 34456753 468999999876 666554 8899999999999988888999999999999999999844445678
Q ss_pred CCCCCcEEEeecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702 149 RCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202 (202)
Q Consensus 149 ~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~ 202 (202)
.+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..+.++++|+
T Consensus 86 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~ 138 (229)
T 3e6j_A 86 SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLT 138 (229)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCS
T ss_pred cCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCC
Confidence 9999999999999999655556789999999999999999 8999998888775
No 56
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.67 E-value=5.3e-16 Score=117.03 Aligned_cols=112 Identities=21% Similarity=0.231 Sum_probs=92.1
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
.++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|++
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 131 (208)
T 2o6s_A 52 TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL 131 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEEC
Confidence 67899999999999865566788999999999999999665666788999999999999999655556788999999999
Q ss_pred ecccCcccCChhccCCCCCceeeccccccccc
Q 035702 159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQ 190 (202)
Q Consensus 159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~ 190 (202)
++|++++..+..+..+++|++|++++|.+.+.
T Consensus 132 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 163 (208)
T 2o6s_A 132 YQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 163 (208)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC
T ss_pred CCCccceeCHHHhccCCCccEEEecCCCeecC
Confidence 99999855555578888888888887765533
No 57
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.67 E-value=4.5e-16 Score=133.38 Aligned_cols=122 Identities=21% Similarity=0.219 Sum_probs=57.8
Q ss_pred cEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEee
Q 035702 80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVG 159 (202)
Q Consensus 80 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~ 159 (202)
.++.|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+.++++|++|+++
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence 34555555555555444445555555555555555554444444555555555555555543333444445555555555
Q ss_pred cccCcccCChhccCCCCCceeecccccccc-ccChhccCCCCC
Q 035702 160 NNKLEGQIPKEIGSLLKLQTLALYYNYLTR-QLPDFIGNLSAL 201 (202)
Q Consensus 160 ~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g-~iP~~~~~l~~L 201 (202)
+|++++..+..+.++++|++|++++|.+++ .+|..++++++|
T Consensus 109 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L 151 (570)
T 2z63_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151 (570)
T ss_dssp TSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred ccccccCCCccccccccccEEecCCCccceecChhhhcccCCC
Confidence 554442222234444444444444444443 234444444443
No 58
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.66 E-value=5.5e-16 Score=113.76 Aligned_cols=107 Identities=18% Similarity=0.202 Sum_probs=89.6
Q ss_pred EEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecc
Q 035702 82 TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNN 161 (202)
Q Consensus 82 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n 161 (202)
+.+++++++++. +|..+. ++|++|++++|.+++..|..|..+++|++|++++|++++..+..+.++++|++|++++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 467778888877 666553 78999999999999877888999999999999999999555556789999999999999
Q ss_pred cCcccCChhccCCCCCceeecccccccccc
Q 035702 162 KLEGQIPKEIGSLLKLQTLALYYNYLTRQL 191 (202)
Q Consensus 162 ~~~g~~p~~~~~l~~L~~L~l~~N~l~g~i 191 (202)
++++..+..+..+++|++|++++|.+++..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 999655556889999999999999987543
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.66 E-value=5.6e-16 Score=129.52 Aligned_cols=123 Identities=20% Similarity=0.153 Sum_probs=90.7
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
..++.|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 46788889998888877778888888889999888888777778888888888888888888444456788888888888
Q ss_pred ecccCcccCChhccCCCCCceeeccccccccccCh-hccCCCCC
Q 035702 159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPD-FIGNLSAL 201 (202)
Q Consensus 159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~-~~~~l~~L 201 (202)
++|.+++..+..+.++++|++|++++|+..+.+|. .|.++++|
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L 187 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL 187 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc
Confidence 88888754444566666677777766433334443 45555544
No 60
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.66 E-value=1e-15 Score=112.64 Aligned_cols=118 Identities=21% Similarity=0.235 Sum_probs=98.8
Q ss_pred EEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecc
Q 035702 82 TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNN 161 (202)
Q Consensus 82 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n 161 (202)
+.+++++++++. +|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 578999999887 55444 378999999999999666667889999999999999999555566799999999999999
Q ss_pred cCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702 162 KLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202 (202)
Q Consensus 162 ~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~ 202 (202)
++++..+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 127 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQ 127 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccC
Confidence 99966556688999999999999999955555567777764
No 61
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.66 E-value=1.3e-15 Score=122.78 Aligned_cols=131 Identities=21% Similarity=0.275 Sum_probs=110.6
Q ss_pred CCCccccceeCCCC---------CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCC
Q 035702 65 NLCLWTGVTCGHRH---------QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALP 135 (202)
Q Consensus 65 ~~c~w~gv~c~~~~---------~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls 135 (202)
..|.|+.+.|.... .+++.|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus 31 c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 31 CHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred CcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 44789999886432 478999999999999777789999999999999999998889999999999999999
Q ss_pred CCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccccc--cccChhccCC
Q 035702 136 NNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLT--RQLPDFIGNL 198 (202)
Q Consensus 136 ~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~--g~iP~~~~~l 198 (202)
+|.++ .+|..+. ++|++|++++|++++..+..+.++++|++|++++|.++ +..|..+..+
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 172 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC
Confidence 99999 7887665 79999999999998554556889999999999999985 3556655544
No 62
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.65 E-value=3.5e-16 Score=135.15 Aligned_cols=121 Identities=20% Similarity=0.199 Sum_probs=107.4
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
.+++.|+|++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|++++|.+++..+..++++++|++|++
T Consensus 76 ~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~L 155 (635)
T 4g8a_A 76 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 155 (635)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeecc
Confidence 67999999999999977778999999999999999999666678999999999999999999655567999999999999
Q ss_pred ecccCcc-cCChhccCCCCCceeeccccccccccChhccCCC
Q 035702 159 GNNKLEG-QIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLS 199 (202)
Q Consensus 159 ~~n~~~g-~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~ 199 (202)
++|.+++ .+|..+..+++|++|++++|++++..|..+..+.
T Consensus 156 s~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 197 (635)
T 4g8a_A 156 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 197 (635)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred ccCccccCCCchhhccchhhhhhcccCccccccccccccchh
Confidence 9999975 4678889999999999999999988777766543
No 63
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=6.9e-16 Score=115.63 Aligned_cols=119 Identities=13% Similarity=0.221 Sum_probs=97.1
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
.+++.|++++|.++. ++.+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 66 ~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L 143 (197)
T 4ezg_A 66 HNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143 (197)
T ss_dssp TTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred CCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence 568888998886654 346888899999999999998777888888999999999999998778888889999999999
Q ss_pred ecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702 159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202 (202)
Q Consensus 159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~ 202 (202)
++|.+.+.+| .+..+++|++|++++|.+++ ++ .+..+++|+
T Consensus 144 ~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~ 184 (197)
T 4ezg_A 144 SYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLN 184 (197)
T ss_dssp CSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCC
T ss_pred cCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCC
Confidence 9998333666 68888999999999999884 55 567777664
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.64 E-value=6.3e-16 Score=131.09 Aligned_cols=132 Identities=20% Similarity=0.156 Sum_probs=108.3
Q ss_pred CCccccceeCCCCCcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhcc-CCCCCCeEeCCCCcCccCcC
Q 035702 66 LCLWTGVTCGHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIG-NLLRLEKLALPNNSFSGTIP 144 (202)
Q Consensus 66 ~c~w~gv~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~ls~n~l~~~~p 144 (202)
.|.+.++.|... ..++.|++++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|++|++++|.+++. |
T Consensus 108 ~N~l~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~ 185 (487)
T 3oja_A 108 NNNISRVSCSRG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K 185 (487)
T ss_dssp SSCCCCEEECCC-SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E
T ss_pred CCcCCCCCcccc-CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c
Confidence 355666666543 6789999999999998788888999999999999999988888776 789999999999999854 4
Q ss_pred hhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702 145 TNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202 (202)
Q Consensus 145 ~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~ 202 (202)
. ...+++|++|++++|.+++ +|+.+..+++|+.|++++|.++ .+|..+..+++|+
T Consensus 186 ~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~ 240 (487)
T 3oja_A 186 G-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE 240 (487)
T ss_dssp C-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCC
T ss_pred c-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCC
Confidence 3 4468999999999999995 5556888999999999999998 5788788777664
No 65
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.64 E-value=1.8e-15 Score=111.53 Aligned_cols=105 Identities=17% Similarity=0.218 Sum_probs=90.4
Q ss_pred EEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecc
Q 035702 82 TELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNN 161 (202)
Q Consensus 82 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n 161 (202)
+.+++++++++. +|..+. ++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 578999999876 676664 88999999999999888889999999999999999999544445689999999999999
Q ss_pred cCcccCChhccCCCCCceeecccccccc
Q 035702 162 KLEGQIPKEIGSLLKLQTLALYYNYLTR 189 (202)
Q Consensus 162 ~~~g~~p~~~~~l~~L~~L~l~~N~l~g 189 (202)
++++..+..+..+++|++|++++|.+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 9995444458899999999999999983
No 66
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.64 E-value=8.9e-16 Score=129.29 Aligned_cols=123 Identities=23% Similarity=0.210 Sum_probs=82.7
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
.+++.|++++|.+++..|..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+.++++|++|++
T Consensus 56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 135 (477)
T 2id5_A 56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEE
T ss_pred CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEEC
Confidence 56777777777777766777777777777777777777444445667777777777777777666666677777777777
Q ss_pred ecccCcccCChhccCCCCCceeeccccccccccChhccCCCCC
Q 035702 159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201 (202)
Q Consensus 159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L 201 (202)
++|.+++..|..+..+++|++|++++|++++..+..+.++++|
T Consensus 136 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 178 (477)
T 2id5_A 136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL 178 (477)
T ss_dssp CCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTC
T ss_pred CCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCC
Confidence 7777665555566666666666666666664333445555444
No 67
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.64 E-value=4e-16 Score=133.36 Aligned_cols=123 Identities=21% Similarity=0.242 Sum_probs=110.5
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCcc-CcChhccCCCCCcEEE
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSG-TIPTNLSRCSNLIYFH 157 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~-~~p~~l~~l~~L~~L~ 157 (202)
.++++|++++|.+++..+..+..+++|++|++++|.+++..|..++.+++|++|++++|.+++ ..|..++++++|++|+
T Consensus 50 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 129 (549)
T 2z81_A 50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129 (549)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred CcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEE
Confidence 679999999999999888889999999999999999997777779999999999999999986 4577899999999999
Q ss_pred eecccCcccCC-hhccCCCCCceeeccccccccccChhccCCCCC
Q 035702 158 VGNNKLEGQIP-KEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201 (202)
Q Consensus 158 l~~n~~~g~~p-~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L 201 (202)
+++|.+.+.+| ..+.++++|++|++++|.+++.+|..++++++|
T Consensus 130 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 174 (549)
T 2z81_A 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI 174 (549)
T ss_dssp EEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred CCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccC
Confidence 99999655666 578999999999999999999999988877654
No 68
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.64 E-value=9e-16 Score=115.00 Aligned_cols=119 Identities=18% Similarity=0.247 Sum_probs=104.5
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
.+++.+++++|.+.. ++ .+..+++|++|++++|.++ .++.+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 568999999999985 55 6889999999999999776 3347889999999999999999888999999999999999
Q ss_pred ecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702 159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202 (202)
Q Consensus 159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~ 202 (202)
++|++++..|..+..+++|++|++++|.+.+.+| .+..+++|+
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~ 162 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELK 162 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCC
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCC
Confidence 9999998788899999999999999998334777 588887774
No 69
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.63 E-value=2.3e-16 Score=139.67 Aligned_cols=115 Identities=32% Similarity=0.469 Sum_probs=106.8
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
..++.|+|++|.+.. +|..+..+++|++|+|++|.++ .+|..++.+++|++|+|++|.++ .+|..++++++|++|+|
T Consensus 224 ~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L 300 (727)
T 4b8c_D 224 QLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYF 300 (727)
T ss_dssp CCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEEC
T ss_pred CCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEEC
Confidence 567889999999984 7878889999999999999999 89999999999999999999999 89999999999999999
Q ss_pred ecccCcccCChhccCCCCCceeeccccccccccChhccC
Q 035702 159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGN 197 (202)
Q Consensus 159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~ 197 (202)
++|.++ .+|..+..+++|++|+|++|.++|.+|..+..
T Consensus 301 ~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 301 FDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp CSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred CCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 999998 88999999999999999999999988877643
No 70
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.63 E-value=7.8e-16 Score=113.33 Aligned_cols=117 Identities=23% Similarity=0.272 Sum_probs=84.0
Q ss_pred CcEEEEEcCCCCCccccCccccCCC-CCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChh-ccCCCCCcEE
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLS-FLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTN-LSRCSNLIYF 156 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~-l~~l~~L~~L 156 (202)
..++.|++++|.++. ++. +..+. +|++|++++|.+++. +.+..+++|++|++++|.++ .+|.. +..+++|++|
T Consensus 19 ~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 19 VRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTEL 93 (176)
T ss_dssp TSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEE
T ss_pred CCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCEE
Confidence 457788888888775 343 44444 788888888888754 56777888888888888887 44533 4778888888
Q ss_pred EeecccCcccCCh--hccCCCCCceeeccccccccccChh----ccCCCCCC
Q 035702 157 HVGNNKLEGQIPK--EIGSLLKLQTLALYYNYLTRQLPDF----IGNLSALE 202 (202)
Q Consensus 157 ~l~~n~~~g~~p~--~~~~l~~L~~L~l~~N~l~g~iP~~----~~~l~~L~ 202 (202)
++++|.++ .+|. .+..+++|++|++++|.++ .+|.. +..+++|+
T Consensus 94 ~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~ 143 (176)
T 1a9n_A 94 ILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVR 143 (176)
T ss_dssp ECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCS
T ss_pred ECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccc
Confidence 88888886 5665 6777888888888888887 56664 66666653
No 71
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=8.8e-16 Score=132.45 Aligned_cols=108 Identities=21% Similarity=0.283 Sum_probs=100.1
Q ss_pred cEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEee
Q 035702 80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVG 159 (202)
Q Consensus 80 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~ 159 (202)
.++.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++.+++|++|++++|.+++ +| .++.+++|++|+++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 47889999999998 666 999999999999999999 889999999999999999999995 78 89999999999999
Q ss_pred cccCcccC-ChhccCCCCCceeeccccccccccC
Q 035702 160 NNKLEGQI-PKEIGSLLKLQTLALYYNYLTRQLP 192 (202)
Q Consensus 160 ~n~~~g~~-p~~~~~l~~L~~L~l~~N~l~g~iP 192 (202)
+|++++.. |..+..+++|+.|++++|.+++..|
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 99999766 8999999999999999999996655
No 72
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.63 E-value=6.6e-16 Score=125.45 Aligned_cols=122 Identities=21% Similarity=0.213 Sum_probs=106.9
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcCh--hccCCCCCcEE
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPT--NLSRCSNLIYF 156 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~--~l~~l~~L~~L 156 (202)
.+++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|. .+.++++|++|
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L 154 (353)
T 2z80_A 76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQIL 154 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEE
Confidence 67999999999999977788999999999999999999554455899999999999999999 5665 78899999999
Q ss_pred Eeeccc-CcccCChhccCCCCCceeeccccccccccChhccCCCCC
Q 035702 157 HVGNNK-LEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201 (202)
Q Consensus 157 ~l~~n~-~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L 201 (202)
++++|. +++..|..+..+++|++|++++|.+++..|..+.++++|
T Consensus 155 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 200 (353)
T 2z80_A 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV 200 (353)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred ECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccC
Confidence 999995 665556788999999999999999998889888887765
No 73
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.63 E-value=1.8e-15 Score=128.65 Aligned_cols=121 Identities=24% Similarity=0.307 Sum_probs=74.5
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcc--cCchhccCCCCCCeEeCCCCcCccCcChh-ccCCC----
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHG--EIPQEIGNLLRLEKLALPNNSFSGTIPTN-LSRCS---- 151 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~ls~n~l~~~~p~~-l~~l~---- 151 (202)
..++.|++++|.+++..|..+..+++|++|++++|.+++ .+|..+..+++|++|++++|.+++.+|.. +..++
T Consensus 324 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~ 403 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS 403 (520)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCE
T ss_pred CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCE
Confidence 556777777777777666666777777777777777764 44555666667777777777666545543 44444
Q ss_pred ------------------CCcEEEeecccCcccCChhccCCCCCceeeccccccccccChh-ccCCCCC
Q 035702 152 ------------------NLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDF-IGNLSAL 201 (202)
Q Consensus 152 ------------------~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~-~~~l~~L 201 (202)
+|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|
T Consensus 404 L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L 470 (520)
T 2z7x_B 404 LNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSL 470 (520)
T ss_dssp EECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred EECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcc
Confidence 4555555555555 45555556666666666666666 45544 5555544
No 74
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.63 E-value=1.1e-15 Score=124.74 Aligned_cols=120 Identities=25% Similarity=0.245 Sum_probs=103.3
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
.+++.|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+.++++|++|+|
T Consensus 64 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 143 (361)
T 2xot_A 64 TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYL 143 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred cccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEEC
Confidence 67999999999999977788999999999999999999777778999999999999999999777889999999999999
Q ss_pred ecccCcccCChhc----cCCCCCceeeccccccccccChhccCCC
Q 035702 159 GNNKLEGQIPKEI----GSLLKLQTLALYYNYLTRQLPDFIGNLS 199 (202)
Q Consensus 159 ~~n~~~g~~p~~~----~~l~~L~~L~l~~N~l~g~iP~~~~~l~ 199 (202)
++|+++ .+|..+ ..+++|+.|++++|++++..+..+..++
T Consensus 144 ~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~ 187 (361)
T 2xot_A 144 SQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLP 187 (361)
T ss_dssp CSSCCC-SCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSC
T ss_pred CCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhcc
Confidence 999999 566554 5799999999999999943334555443
No 75
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.62 E-value=1.3e-15 Score=129.56 Aligned_cols=117 Identities=25% Similarity=0.255 Sum_probs=103.5
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
.+++.|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.++ .+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 67999999999999977778999999999999999999888889999999999999999999 78876 8999999999
Q ss_pred ecccCcc-cCChhccCCCCCceeeccccccccccChhccCCCCC
Q 035702 159 GNNKLEG-QIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201 (202)
Q Consensus 159 ~~n~~~g-~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L 201 (202)
++|.+++ .+|..++++++|++|++++|.+++. .+..+++|
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L 138 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAHL 138 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTTS
T ss_pred cCCccccccchhhhccCCcceEEEecCcccchh---hccccccc
Confidence 9999986 5788999999999999999999863 45555544
No 76
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=2.8e-16 Score=141.27 Aligned_cols=121 Identities=20% Similarity=0.280 Sum_probs=99.8
Q ss_pred CcEEEEEcCCCCCcc-----------------ccCcccc--CCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCc-
Q 035702 79 QRVTELNLSSQRIGG-----------------ILSPYVG--NLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNS- 138 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~-----------------~~~~~l~--~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~- 138 (202)
.+++.|++++|.+++ .+|+.+. .+++|++|++++|.+.+.+|..++++++|++|++++|.
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ 527 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence 678899999999988 4788877 89999999999999888999888899999999999997
Q ss_pred Ccc-CcChhccCCC-------CCcEEEeecccCcccCCh--hccCCCCCceeeccccccccccChhccCCCCCC
Q 035702 139 FSG-TIPTNLSRCS-------NLIYFHVGNNKLEGQIPK--EIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202 (202)
Q Consensus 139 l~~-~~p~~l~~l~-------~L~~L~l~~n~~~g~~p~--~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~ 202 (202)
++| .+|..+++++ +|++|++++|.++ .+|. .+.++++|+.|++++|.++ .+| .++++++|+
T Consensus 528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~ 598 (876)
T 4ecn_A 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLT 598 (876)
T ss_dssp SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEES
T ss_pred cccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcce
Confidence 887 7887665554 8888888888888 7887 7888888888888888887 777 677666553
No 77
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.61 E-value=2e-15 Score=130.57 Aligned_cols=124 Identities=16% Similarity=0.042 Sum_probs=108.4
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
.+++.|++++|.+.+..|..|..+++|++|++++|.+++..|..++.+++|++|++++|.+++..|..+.++++|++|++
T Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L 136 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL 136 (606)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEEC
T ss_pred ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEEC
Confidence 67899999999999988888999999999999999999888889999999999999999999665788899999999999
Q ss_pred ecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702 159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202 (202)
Q Consensus 159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~ 202 (202)
++|.+++..++.+..+++|++|++++|.+++..|..++.+++|+
T Consensus 137 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3t6q_A 137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT 180 (606)
T ss_dssp CSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCC
T ss_pred CCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccc
Confidence 99999863334455589999999999999977788888887764
No 78
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.61 E-value=1.3e-15 Score=130.49 Aligned_cols=123 Identities=21% Similarity=0.317 Sum_probs=75.5
Q ss_pred cEEEEEcCCCCCccccC-ccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCc-cCcChhccCCCCCcEEE
Q 035702 80 RVTELNLSSQRIGGILS-PYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFS-GTIPTNLSRCSNLIYFH 157 (202)
Q Consensus 80 ~v~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~-~~~p~~l~~l~~L~~L~ 157 (202)
+++.|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..+++|++|+
T Consensus 397 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~ 476 (570)
T 2z63_A 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476 (570)
T ss_dssp TCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred CCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEE
Confidence 34444444444444333 23555666666666666666555666666666666666666665 45666666667777777
Q ss_pred eecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702 158 VGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202 (202)
Q Consensus 158 l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~ 202 (202)
+++|++++..|..+..+++|++|++++|++++..|..+.++++|+
T Consensus 477 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 521 (570)
T 2z63_A 477 LSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521 (570)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCc
Confidence 777776655566666667777777777777655555566666553
No 79
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=1.7e-15 Score=110.57 Aligned_cols=112 Identities=20% Similarity=0.194 Sum_probs=99.4
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcC--hhccCCCCCcEE
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIP--TNLSRCSNLIYF 156 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p--~~l~~l~~L~~L 156 (202)
.+++.|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++ +| ..+..+++|++|
T Consensus 49 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~~L 125 (168)
T 2ell_A 49 VNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLECLKSL 125 (168)
T ss_dssp GGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS-SGGGGGGSSCSCCCEE
T ss_pred CCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc-chhHHHHhcCCCCCEE
Confidence 6799999999999985 779999999999999999997788888889999999999999995 44 788999999999
Q ss_pred EeecccCcccCC---hhccCCCCCceeeccccccccccChh
Q 035702 157 HVGNNKLEGQIP---KEIGSLLKLQTLALYYNYLTRQLPDF 194 (202)
Q Consensus 157 ~l~~n~~~g~~p---~~~~~l~~L~~L~l~~N~l~g~iP~~ 194 (202)
++++|.+++..+ ..+..+++|++|++++|.+. .+|..
T Consensus 126 ~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 126 DLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp ECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred EeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 999999995443 37889999999999999997 67754
No 80
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.60 E-value=4.6e-16 Score=124.53 Aligned_cols=122 Identities=19% Similarity=0.156 Sum_probs=75.7
Q ss_pred CcEEEEEcCCCCCccccCccccCC-----CCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccC--cChhc--cC
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNL-----SFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGT--IPTNL--SR 149 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~--~p~~l--~~ 149 (202)
.+++.|++++|.+++. |..+..+ ++|++|++++|.+++..|..++.+++|++|++++|.+.+. +|..+ .+
T Consensus 121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199 (312)
T ss_dssp CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence 4566666666666664 5545444 6677777777777655556667777777777777776654 23344 66
Q ss_pred CCCCcEEEeecccCcc--cCC-hhccCCCCCceeeccccccccccC-hhccCCCCC
Q 035702 150 CSNLIYFHVGNNKLEG--QIP-KEIGSLLKLQTLALYYNYLTRQLP-DFIGNLSAL 201 (202)
Q Consensus 150 l~~L~~L~l~~n~~~g--~~p-~~~~~l~~L~~L~l~~N~l~g~iP-~~~~~l~~L 201 (202)
+++|++|++++|++++ .++ ..+..+++|++|++++|++++.+| ..+..+++|
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 255 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTC
T ss_pred CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCC
Confidence 7777777777777762 122 223466777777777777776554 334444444
No 81
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.60 E-value=4.9e-15 Score=127.34 Aligned_cols=122 Identities=24% Similarity=0.314 Sum_probs=73.5
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcc--cCchhccCCCCCCeEeCCCCcCccCcChh-ccCC-----
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHG--EIPQEIGNLLRLEKLALPNNSFSGTIPTN-LSRC----- 150 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~ls~n~l~~~~p~~-l~~l----- 150 (202)
..++.|++++|.+++..|..+..+++|++|++++|.+++ .+|..+..+++|++|++++|.+++.+|.. +..+
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~ 432 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV 432 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCE
T ss_pred CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCE
Confidence 455666666666666555555666666666666666553 22344555555566666555555434432 2333
Q ss_pred -----------------CCCcEEEeecccCcccCChhccCCCCCceeeccccccccccChh-ccCCCCCC
Q 035702 151 -----------------SNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDF-IGNLSALE 202 (202)
Q Consensus 151 -----------------~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~-~~~l~~L~ 202 (202)
++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|+
T Consensus 433 L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~ 500 (562)
T 3a79_B 433 LNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQ 500 (562)
T ss_dssp EECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCC
T ss_pred EECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCC
Confidence 46666666666666 56666667777888888888777 56665 66666553
No 82
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.59 E-value=4.5e-15 Score=119.02 Aligned_cols=120 Identities=21% Similarity=0.167 Sum_probs=87.6
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhcc-CCCCCCeEeCCCCcCccCcChhccCCCCCcEEE
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIG-NLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFH 157 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ 157 (202)
..++.|++++|.+++..+..+..+++|++|++++|.+++..+..+. .+++|++|++++|.+++ +|. ...+++|++|+
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~-~~~l~~L~~L~ 197 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKG-QVVFAKLKTLD 197 (317)
T ss_dssp SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EEC-CCCCTTCCEEE
T ss_pred CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-ccc-ccccccCCEEE
Confidence 4577778888887776666777788888888888888866666553 57788888888888773 343 33577888888
Q ss_pred eecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702 158 VGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202 (202)
Q Consensus 158 l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~ 202 (202)
+++|+++ .+|..+..+++|++|++++|.++ .+|..+..+++|+
T Consensus 198 Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~ 240 (317)
T 3o53_A 198 LSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE 240 (317)
T ss_dssp CCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCC
T ss_pred CCCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCC
Confidence 8888887 45556777788888888888887 5777777766654
No 83
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.59 E-value=5.1e-15 Score=128.29 Aligned_cols=112 Identities=24% Similarity=0.230 Sum_probs=101.5
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcCh-hccCCCCCcEEE
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPT-NLSRCSNLIYFH 157 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~-~l~~l~~L~~L~ 157 (202)
.+++.|++++|.+++..+..+..+++|++|++++|.+++..|..++.+++|++|++++|.++ .+|. .++++++|++|+
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLS 153 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEE
Confidence 57899999999999977778999999999999999999888888899999999999999999 5554 468999999999
Q ss_pred eecccCcccCChhccCCCCCceeecccccccccc
Q 035702 158 VGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQL 191 (202)
Q Consensus 158 l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~i 191 (202)
+++|.+++..|..+..+++|++|++++|.+++..
T Consensus 154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 187 (597)
T 3oja_B 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 187 (597)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred eeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC
Confidence 9999999877888999999999999999998643
No 84
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.59 E-value=6e-15 Score=126.79 Aligned_cols=108 Identities=25% Similarity=0.252 Sum_probs=93.6
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
.+++.|++++|.+++..+..+..+++|++|++++|.+++..|..|..+++|++|++++|.++ .+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 57889999999999877778899999999999999999777888899999999999999998 78876 8899999999
Q ss_pred ecccCcc-cCChhccCCCCCceeecccccccc
Q 035702 159 GNNKLEG-QIPKEIGSLLKLQTLALYYNYLTR 189 (202)
Q Consensus 159 ~~n~~~g-~~p~~~~~l~~L~~L~l~~N~l~g 189 (202)
++|++++ .+|..+.++++|++|++++|.+++
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred CCCCccccCchHhhcccCcccEEecCCCcccc
Confidence 9999885 456788889999999999998874
No 85
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.59 E-value=7.4e-15 Score=123.11 Aligned_cols=121 Identities=23% Similarity=0.273 Sum_probs=69.8
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChh------------
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTN------------ 146 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~------------ 146 (202)
.+++.|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.++...+..
T Consensus 99 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 178 (452)
T 3zyi_A 99 HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL 178 (452)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeC
Confidence 56777777777777766666777777777777777777554555666777777777776666322222
Q ss_pred -------------ccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccccccccChhccCCCCC
Q 035702 147 -------------LSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201 (202)
Q Consensus 147 -------------l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L 201 (202)
+.++++|++|++++|+++ .+| .+..+++|++|++++|.+++..|..|.++++|
T Consensus 179 ~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 244 (452)
T 3zyi_A 179 GELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSL 244 (452)
T ss_dssp CCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTC
T ss_pred CCCCCccccChhhccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcCcccCcccccCccCC
Confidence 334444445554444444 222 24444455555555555554445555544444
No 86
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.58 E-value=9.2e-15 Score=120.15 Aligned_cols=111 Identities=24% Similarity=0.254 Sum_probs=99.9
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChh-ccCCCCCcEEE
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTN-LSRCSNLIYFH 157 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~-l~~l~~L~~L~ 157 (202)
.+++.|++++|.+++..+..+..+++|++|++++|.+++..|..++.+++|++|++++|.++ .+|.. +.++++|++|+
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLS 147 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEE
Confidence 57899999999999877778999999999999999999877888999999999999999999 66655 58999999999
Q ss_pred eecccCcccCChhccCCCCCceeeccccccccc
Q 035702 158 VGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQ 190 (202)
Q Consensus 158 l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~ 190 (202)
+++|.+++..|..+..+++|++|++++|.+++.
T Consensus 148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred CCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence 999999977677899999999999999999854
No 87
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.58 E-value=5.8e-15 Score=132.63 Aligned_cols=120 Identities=18% Similarity=0.194 Sum_probs=93.7
Q ss_pred CcEEEEEcCCCCCcccc-CccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChh--ccCCCCCcE
Q 035702 79 QRVTELNLSSQRIGGIL-SPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTN--LSRCSNLIY 155 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~--l~~l~~L~~ 155 (202)
.+++.|++++|...+.+ |..|..+++|++|++++|.+++..|..|..+++|++|++++|.+++.+|.. +.++++|++
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~ 127 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127 (844)
T ss_dssp CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCE
T ss_pred ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCE
Confidence 56788888888666555 567888888888888888888777888888888888888888888766655 778888888
Q ss_pred EEeecccCcccCC-hhccCCCCCceeeccccccccccChhccCC
Q 035702 156 FHVGNNKLEGQIP-KEIGSLLKLQTLALYYNYLTRQLPDFIGNL 198 (202)
Q Consensus 156 L~l~~n~~~g~~p-~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l 198 (202)
|++++|.+++..+ ..+.++++|++|++++|.+++..|..+..+
T Consensus 128 L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp EEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred EECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 8888888876544 467888888888888888877777666543
No 88
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.57 E-value=1.4e-15 Score=121.72 Aligned_cols=117 Identities=19% Similarity=0.178 Sum_probs=86.1
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCccc--Cchhc--cCCCCCCeEeCCCCcCcc--CcC-hhccCCC
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGE--IPQEI--GNLLRLEKLALPNNSFSG--TIP-TNLSRCS 151 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~p~~~--~~l~~L~~L~ls~n~l~~--~~p-~~l~~l~ 151 (202)
.+++.|++++|.+.+..+..+..+++|++|++++|.+.+. .|..+ ..+++|++|++++|.+++ .++ ..+.+++
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~ 228 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence 5678888888888886667788888888888888887655 33444 678888888888888872 222 2335778
Q ss_pred CCcEEEeecccCcccCC-hhccCCCCCceeeccccccccccChhcc
Q 035702 152 NLIYFHVGNNKLEGQIP-KEIGSLLKLQTLALYYNYLTRQLPDFIG 196 (202)
Q Consensus 152 ~L~~L~l~~n~~~g~~p-~~~~~l~~L~~L~l~~N~l~g~iP~~~~ 196 (202)
+|++|++++|++++..| ..+..+++|++|++++|+++ .+|..+.
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~ 273 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP 273 (312)
T ss_dssp CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC
T ss_pred CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc
Confidence 88888888888886654 34556778888888888887 7776554
No 89
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.56 E-value=1.8e-14 Score=115.85 Aligned_cols=56 Identities=18% Similarity=0.200 Sum_probs=24.0
Q ss_pred ChhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccccccccChhccCCCC
Q 035702 144 PTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSA 200 (202)
Q Consensus 144 p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~ 200 (202)
|..+.++++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++
T Consensus 209 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~ 264 (330)
T 1xku_A 209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKY 264 (330)
T ss_dssp TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSS
T ss_pred HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCC
Confidence 333444444444444444444333333444444444444444444 44444444333
No 90
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.56 E-value=6.5e-15 Score=129.00 Aligned_cols=114 Identities=21% Similarity=0.215 Sum_probs=61.0
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
.+++.|++++|.+++..|..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..++++++|++|++
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 128 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence 34555566655555554555555555555555555555332234555555555555555555433345555555555555
Q ss_pred ecccCcccCChhccCCCCCceeeccccccccccC
Q 035702 159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLP 192 (202)
Q Consensus 159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP 192 (202)
++|.+++..|..+.++++|++|++++|.+++..|
T Consensus 129 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 162 (680)
T 1ziw_A 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162 (680)
T ss_dssp CSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred CCCcccccCchhhcccccCCEEEccCCcccccCH
Confidence 5555554444445555555555555555554333
No 91
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.56 E-value=1.8e-14 Score=120.31 Aligned_cols=57 Identities=21% Similarity=0.197 Sum_probs=33.4
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCC
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALP 135 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls 135 (202)
.+++.|++++|.+++..+..+..+++|++|++++|.++...+..+..+++|++|+++
T Consensus 112 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~ 168 (440)
T 3zyj_A 112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG 168 (440)
T ss_dssp SSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECC
T ss_pred ccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCC
Confidence 567777777777776544556677777777777776664333333333333333333
No 92
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.54 E-value=7e-15 Score=124.68 Aligned_cols=120 Identities=23% Similarity=0.217 Sum_probs=60.2
Q ss_pred cEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcCh--------------
Q 035702 80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPT-------------- 145 (202)
Q Consensus 80 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~-------------- 145 (202)
+++.|++++|.+++..|..+..+++|++|++++|.+++..| +..+++|++|++++|.+++..+.
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~ 112 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS 112 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCC
Confidence 45555555555555444455555555555555555554333 44444444444444444321000
Q ss_pred --hccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccccccccChhcc-CCCCC
Q 035702 146 --NLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIG-NLSAL 201 (202)
Q Consensus 146 --~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~-~l~~L 201 (202)
....+++|+.|++++|.+++..|..+..+++|++|++++|.+++.+|..+. .+++|
T Consensus 113 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L 171 (487)
T 3oja_A 113 RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171 (487)
T ss_dssp CEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred CCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc
Confidence 001234556666666666655455555566666666666666655555554 34443
No 93
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=6.4e-15 Score=105.34 Aligned_cols=104 Identities=19% Similarity=0.179 Sum_probs=92.2
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccC-cChhccCCCCCcEEE
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGT-IPTNLSRCSNLIYFH 157 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~-~p~~l~~l~~L~~L~ 157 (202)
.+++.|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++. .+..+..+++|++|+
T Consensus 42 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~ 119 (149)
T 2je0_A 42 EELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD 119 (149)
T ss_dssp TTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEE
T ss_pred CCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEe
Confidence 6799999999999985 7789999999999999999977888888899999999999999952 347899999999999
Q ss_pred eecccCcccCC---hhccCCCCCceeeccc
Q 035702 158 VGNNKLEGQIP---KEIGSLLKLQTLALYY 184 (202)
Q Consensus 158 l~~n~~~g~~p---~~~~~l~~L~~L~l~~ 184 (202)
+++|.+++..+ ..+..+++|+.|++++
T Consensus 120 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 120 LFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999996544 4688999999999863
No 94
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.54 E-value=1.6e-14 Score=116.41 Aligned_cols=123 Identities=19% Similarity=0.173 Sum_probs=91.3
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
..++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l 271 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYL 271 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEEC
T ss_pred CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEEC
Confidence 45777788888887766677788888888888888888666667778888888888888887 77877888888888888
Q ss_pred ecccCcccCChhccC------CCCCceeeccccccc--cccChhccCCCCCC
Q 035702 159 GNNKLEGQIPKEIGS------LLKLQTLALYYNYLT--RQLPDFIGNLSALE 202 (202)
Q Consensus 159 ~~n~~~g~~p~~~~~------l~~L~~L~l~~N~l~--g~iP~~~~~l~~L~ 202 (202)
++|++++..+..+.. .++|+.+++++|.+. +..|..|..+++|+
T Consensus 272 ~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~ 323 (332)
T 2ft3_A 272 HTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL 323 (332)
T ss_dssp CSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCST
T ss_pred CCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhh
Confidence 888887443444433 356788888888776 45566676666653
No 95
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.54 E-value=1.1e-14 Score=112.03 Aligned_cols=112 Identities=19% Similarity=0.210 Sum_probs=72.5
Q ss_pred CcEEEEEcCCCC-CccccCccccCCCCCcEEEccC-CcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCc--
Q 035702 79 QRVTELNLSSQR-IGGILSPYVGNLSFLRYINLAD-NGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLI-- 154 (202)
Q Consensus 79 ~~v~~L~l~~~~-l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~-- 154 (202)
.+++.|++++|. +++..+..+..+++|++|++++ |.+++..+..+..+++|++|++++|.+++ +|. +..+++|+
T Consensus 55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L 132 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIF 132 (239)
T ss_dssp TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSE
T ss_pred CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccc
Confidence 567777777776 6665445677777777777777 77775555566777777777777777763 555 55666665
Q ss_pred -EEEeecc-cCcccCChhccCCCCCc-eeeccccccccccCh
Q 035702 155 -YFHVGNN-KLEGQIPKEIGSLLKLQ-TLALYYNYLTRQLPD 193 (202)
Q Consensus 155 -~L~l~~n-~~~g~~p~~~~~l~~L~-~L~l~~N~l~g~iP~ 193 (202)
+|++++| .+++..+..+..+++|+ +|++++|+++ .+|.
T Consensus 133 ~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~ 173 (239)
T 2xwt_C 133 FILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQG 173 (239)
T ss_dssp EEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECT
T ss_pred cEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCH
Confidence 6666666 66533333456666666 6666666665 4444
No 96
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.54 E-value=5.7e-15 Score=118.41 Aligned_cols=118 Identities=21% Similarity=0.221 Sum_probs=102.7
Q ss_pred CcEEEEEcCCCCCccccCcccc-CCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEE
Q 035702 79 QRVTELNLSSQRIGGILSPYVG-NLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFH 157 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ 157 (202)
..++.|++++|.+++..+..+. .+++|++|++++|.+++. +. ...+++|++|++++|.++ .+|..+..+++|++|+
T Consensus 144 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~ 220 (317)
T 3o53_A 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWIS 220 (317)
T ss_dssp SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEE
T ss_pred CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCC-cchhhhcccCcccEEE
Confidence 6799999999999997776664 789999999999999854 43 346899999999999999 6777799999999999
Q ss_pred eecccCcccCChhccCCCCCceeeccccccc-cccChhccCCCC
Q 035702 158 VGNNKLEGQIPKEIGSLLKLQTLALYYNYLT-RQLPDFIGNLSA 200 (202)
Q Consensus 158 l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~-g~iP~~~~~l~~ 200 (202)
+++|+++ .+|..+..+++|+.|++++|.++ +.+|..+..+++
T Consensus 221 L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~ 263 (317)
T 3o53_A 221 LRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263 (317)
T ss_dssp CTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHH
T ss_pred CcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhcccc
Confidence 9999999 68888999999999999999998 777777776654
No 97
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.54 E-value=3.2e-14 Score=104.27 Aligned_cols=102 Identities=19% Similarity=0.209 Sum_probs=87.8
Q ss_pred CCCccccceeCCC---------CCcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCC
Q 035702 65 NLCLWTGVTCGHR---------HQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALP 135 (202)
Q Consensus 65 ~~c~w~gv~c~~~---------~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls 135 (202)
..|.|+.+.|... ...++.|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 7 C~C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 7 CSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp CEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3467777877643 1578999999999999878889999999999999999996666678899999999999
Q ss_pred CCcCccCcChhccCCCCCcEEEeecccCccc
Q 035702 136 NNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQ 166 (202)
Q Consensus 136 ~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~ 166 (202)
+|.+++..+..+..+++|++|++++|.++..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 9999965556689999999999999999854
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.53 E-value=1.3e-14 Score=125.11 Aligned_cols=117 Identities=23% Similarity=0.326 Sum_probs=78.6
Q ss_pred CCCCCCCCC-----ccccc-eeCCCCCcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeE
Q 035702 59 SWNNTINLC-----LWTGV-TCGHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKL 132 (202)
Q Consensus 59 ~W~~~~~~c-----~w~gv-~c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 132 (202)
.|..+.++| .|.|+ .|.. .+++.|++++|++++ +|..+. ++|++|++++|.++ .+| ..+++|++|
T Consensus 35 ~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L 105 (571)
T 3cvr_A 35 KWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYL 105 (571)
T ss_dssp HHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEE
T ss_pred HHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEE
Confidence 355555666 68898 6764 578888888888887 666553 67888888888877 566 346777777
Q ss_pred eCCCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccccccccccCh
Q 035702 133 ALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPD 193 (202)
Q Consensus 133 ~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~ 193 (202)
++++|.+++ +|. +.+ +|++|++++|++++ +|. .+++|+.|++++|.+++ +|.
T Consensus 106 ~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~ 157 (571)
T 3cvr_A 106 DACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE 157 (571)
T ss_dssp ECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC
T ss_pred EccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC
Confidence 777777774 666 544 66666666666664 554 45566666666666653 454
No 99
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.53 E-value=7.6e-15 Score=117.27 Aligned_cols=114 Identities=18% Similarity=0.176 Sum_probs=65.6
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCccc--Cc--hhccCCCCCCeEeCCCCcCccCcCh----hccCC
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGE--IP--QEIGNLLRLEKLALPNNSFSGTIPT----NLSRC 150 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~p--~~~~~l~~L~~L~ls~n~l~~~~p~----~l~~l 150 (202)
.+++.|++++|.+.+..+..+..+++|++|++++|.+.+. ++ ..++.+++|++|++++|.++ .++. .+..+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcC
Confidence 5678888888888776667777888888888888876542 11 12244555555555555554 2222 12444
Q ss_pred CCCcEEEeecccCcccCChhccCC---CCCceeeccccccccccChh
Q 035702 151 SNLIYFHVGNNKLEGQIPKEIGSL---LKLQTLALYYNYLTRQLPDF 194 (202)
Q Consensus 151 ~~L~~L~l~~n~~~g~~p~~~~~l---~~L~~L~l~~N~l~g~iP~~ 194 (202)
++|++|++++|++++..|..+..+ ++|++|++++|+++ .+|..
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~ 269 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKG 269 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhh
Confidence 555555555555554444444443 35555555555555 44443
No 100
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.52 E-value=5.2e-14 Score=113.89 Aligned_cols=101 Identities=18% Similarity=0.171 Sum_probs=84.1
Q ss_pred EcCCC-CCccccCccccCCCCCcEEEccC-CcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeeccc
Q 035702 85 NLSSQ-RIGGILSPYVGNLSFLRYINLAD-NGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNK 162 (202)
Q Consensus 85 ~l~~~-~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~ 162 (202)
+++++ ++++ +|. +..+++|++|+|++ |.+++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|+
T Consensus 14 ~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 14 RCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp ECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 33444 6666 777 99999999999996 99997777889999999999999999998778888999999999999999
Q ss_pred CcccCChhccCCCCCceeeccccccc
Q 035702 163 LEGQIPKEIGSLLKLQTLALYYNYLT 188 (202)
Q Consensus 163 ~~g~~p~~~~~l~~L~~L~l~~N~l~ 188 (202)
+++..+..+..++ |+.|++.+|.+.
T Consensus 92 l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 92 LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 9954333444444 999999999987
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.52 E-value=7.7e-14 Score=110.68 Aligned_cols=112 Identities=30% Similarity=0.401 Sum_probs=53.7
Q ss_pred cEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEee
Q 035702 80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVG 159 (202)
Q Consensus 80 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~ 159 (202)
+++.|++++|.+++ ++ .+..+++|++|++++|.+++ + +.+..+++|++|++++|.+++. ..+..+++|++|+++
T Consensus 91 ~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~ 164 (291)
T 1h6t_A 91 NLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLE 164 (291)
T ss_dssp TCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred CCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEcc
Confidence 34444444444433 11 24444444444444444442 1 2344455555555555555422 344555555555555
Q ss_pred cccCcccCChhccCCCCCceeeccccccccccChhccCCCCC
Q 035702 160 NNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201 (202)
Q Consensus 160 ~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L 201 (202)
+|.+++ ++. +..+++|+.|++++|.++ .+|. +..+++|
T Consensus 165 ~N~l~~-~~~-l~~l~~L~~L~L~~N~i~-~l~~-l~~l~~L 202 (291)
T 1h6t_A 165 DNQISD-IVP-LAGLTKLQNLYLSKNHIS-DLRA-LAGLKNL 202 (291)
T ss_dssp SSCCCC-CGG-GTTCTTCCEEECCSSCCC-BCGG-GTTCTTC
T ss_pred CCcccc-chh-hcCCCccCEEECCCCcCC-CChh-hccCCCC
Confidence 555553 222 555566666666666665 3332 4555544
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.51 E-value=1.4e-13 Score=109.19 Aligned_cols=114 Identities=31% Similarity=0.492 Sum_probs=93.7
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
.+++.|++++|.+++. ++ +..+++|++|++++|.+++ ++ .+..+++|++|++++|.+++ + +.+..+++|++|++
T Consensus 68 ~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l 141 (291)
T 1h6t_A 68 PNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYL 141 (291)
T ss_dssp TTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEEC
T ss_pred CCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEc
Confidence 6788999999999884 34 8889999999999999884 44 48889999999999999984 4 46788999999999
Q ss_pred ecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702 159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202 (202)
Q Consensus 159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~ 202 (202)
++|++++ + ..+..+++|++|++++|.+++..| +..+++|+
T Consensus 142 ~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~ 181 (291)
T 1h6t_A 142 GNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQ 181 (291)
T ss_dssp CSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCC
T ss_pred cCCcCCc-c-hhhccCCCCCEEEccCCccccchh--hcCCCccC
Confidence 9999984 4 578889999999999999985444 77777764
No 103
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=1.7e-14 Score=106.13 Aligned_cols=106 Identities=18% Similarity=0.158 Sum_probs=93.8
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcCh--hccCCCCCcEE
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPT--NLSRCSNLIYF 156 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~--~l~~l~~L~~L 156 (202)
.+++.|++++|.+++. +.+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|. .+..+++|++|
T Consensus 42 ~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L 118 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYL 118 (176)
T ss_dssp TCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEE
T ss_pred CCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEE
Confidence 3799999999999985 67999999999999999999554455588999999999999997 7776 78999999999
Q ss_pred EeecccCcccCChh----ccCCCCCceeeccccccc
Q 035702 157 HVGNNKLEGQIPKE----IGSLLKLQTLALYYNYLT 188 (202)
Q Consensus 157 ~l~~n~~~g~~p~~----~~~l~~L~~L~l~~N~l~ 188 (202)
++++|.++ .+|.. +..+++|+.|+++.|...
T Consensus 119 ~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 119 CILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99999998 66764 889999999999999765
No 104
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.51 E-value=1.5e-13 Score=109.86 Aligned_cols=102 Identities=25% Similarity=0.425 Sum_probs=51.3
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
.+++.|++++|.+++. +.+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ ++. +..+++|++|++
T Consensus 85 ~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l 158 (308)
T 1h6u_A 85 TKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSI 158 (308)
T ss_dssp CSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEEC
T ss_pred CCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEc
Confidence 4566666666666652 245556666666666666553 222 4555555555555555552 222 444444555555
Q ss_pred ecccCcccCChhccCCCCCceeeccccccc
Q 035702 159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLT 188 (202)
Q Consensus 159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~ 188 (202)
++|.+++ ++. +..+++|+.|++++|.++
T Consensus 159 ~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 159 GNAQVSD-LTP-LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp CSSCCCC-CGG-GTTCTTCCEEECCSSCCC
T ss_pred cCCcCCC-Chh-hcCCCCCCEEECCCCccC
Confidence 5444442 222 444444444444444443
No 105
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.51 E-value=8.3e-14 Score=112.50 Aligned_cols=116 Identities=30% Similarity=0.470 Sum_probs=91.6
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
.+++.|++++|.+++. ++ +..+++|++|++++|.+++ + +.+..+++|++|++++|.+++ + +.+..+++|++|++
T Consensus 221 ~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L 294 (347)
T 4fmz_A 221 TRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFL 294 (347)
T ss_dssp TTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEEC
T ss_pred CcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEEC
Confidence 5678888888888774 33 7788888888888888874 3 457788888999999888884 4 35778889999999
Q ss_pred ecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702 159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202 (202)
Q Consensus 159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~ 202 (202)
++|.+++..|..+..+++|++|++++|++++..| +..+++|+
T Consensus 295 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 336 (347)
T 4fmz_A 295 NNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMD 336 (347)
T ss_dssp CSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCS
T ss_pred cCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccc
Confidence 9999887777788888999999999999886655 66666653
No 106
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.50 E-value=1.5e-13 Score=109.82 Aligned_cols=114 Identities=24% Similarity=0.394 Sum_probs=97.0
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
.+++.|++++|.+.+. ++ +..+++|++|++++|.+++ ++ .+..+++|++|++++|.+++ ++. +..+++|++|++
T Consensus 63 ~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l 136 (308)
T 1h6u_A 63 NNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYL 136 (308)
T ss_dssp TTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEEC
Confidence 6789999999999884 44 8999999999999999984 44 68899999999999999984 554 889999999999
Q ss_pred ecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702 159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202 (202)
Q Consensus 159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~ 202 (202)
++|.+++ ++. +..+++|++|++++|.+++ +|. +.++++|+
T Consensus 137 ~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~ 176 (308)
T 1h6u_A 137 DLNQITN-ISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLT 176 (308)
T ss_dssp CSSCCCC-CGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCC
T ss_pred CCCccCc-Ccc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCC
Confidence 9999984 444 8899999999999999984 454 77777764
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.50 E-value=1.4e-13 Score=107.74 Aligned_cols=113 Identities=29% Similarity=0.388 Sum_probs=80.0
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
.+++.|++++|.+++. ++ +..+++|++|++++|.+++ +|. +.. ++|++|++++|.+++ ++ .+..+++|++|++
T Consensus 63 ~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~L 135 (263)
T 1xeu_A 63 TNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSI 135 (263)
T ss_dssp TTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEEC
T ss_pred CCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEEC
Confidence 5678888888888874 33 7788888888888888874 443 223 777788888887774 33 4777788888888
Q ss_pred ecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702 159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202 (202)
Q Consensus 159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~ 202 (202)
++|++++ ++ .+..+++|++|++++|.+++. ..+..+++|+
T Consensus 136 s~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~ 175 (263)
T 1xeu_A 136 RNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVN 175 (263)
T ss_dssp TTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCC
T ss_pred CCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCC
Confidence 8888774 44 567777788888888877744 4566666553
No 108
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.50 E-value=1.3e-14 Score=115.91 Aligned_cols=96 Identities=14% Similarity=0.074 Sum_probs=48.1
Q ss_pred CCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccC--cC--hhccCCCCCcEEEeecccCcccCCh----hccC
Q 035702 102 LSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGT--IP--TNLSRCSNLIYFHVGNNKLEGQIPK----EIGS 173 (202)
Q Consensus 102 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~--~p--~~l~~l~~L~~L~l~~n~~~g~~p~----~~~~ 173 (202)
+++|++|++++|.+++..+..+..+++|++|++++|.+.+. ++ ..+..+++|++|++++|+++ .++. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence 44444444444444433344444445555555555544321 11 11234445555555555554 2222 1345
Q ss_pred CCCCceeeccccccccccChhccCC
Q 035702 174 LLKLQTLALYYNYLTRQLPDFIGNL 198 (202)
Q Consensus 174 l~~L~~L~l~~N~l~g~iP~~~~~l 198 (202)
+++|++|++++|.+++.+|..+..+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~ 247 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRC 247 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSC
T ss_pred CCCCCEEECCCCCCCccchhhHHhc
Confidence 6777777777777776667666655
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.50 E-value=1.4e-13 Score=107.65 Aligned_cols=113 Identities=23% Similarity=0.317 Sum_probs=96.3
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
.+++.|++++|+++. ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.++ .+|.. .. ++|++|++
T Consensus 41 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~-~l~~~-~~-~~L~~L~L 113 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLK-NLNGI-PS-ACLSRLFL 113 (263)
T ss_dssp TTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCS-CCTTC-CC-SSCCEEEC
T ss_pred CcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccC-CcCcc-cc-CcccEEEc
Confidence 578999999999987 45 688999999999999999954 44 899999999999999999 46653 33 99999999
Q ss_pred ecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702 159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202 (202)
Q Consensus 159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~ 202 (202)
++|++++ ++ .+..+++|+.|++++|++++ +| .+..+++|+
T Consensus 114 ~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~ 153 (263)
T 1xeu_A 114 DNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLE 153 (263)
T ss_dssp CSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCC
T ss_pred cCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCC
Confidence 9999995 44 68999999999999999984 55 577777764
No 110
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.48 E-value=2.2e-13 Score=100.21 Aligned_cols=95 Identities=23% Similarity=0.227 Sum_probs=81.5
Q ss_pred CcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeeccc
Q 035702 105 LRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYY 184 (202)
Q Consensus 105 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~ 184 (202)
-+.+++++|.++ .+|..+. ++|++|++++|.+++..|..+.++++|++|+|++|++++..+..+.++++|++|++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 368999999997 7888664 8999999999999987788999999999999999999954444578999999999999
Q ss_pred cccccccChhccCCCCCC
Q 035702 185 NYLTRQLPDFIGNLSALE 202 (202)
Q Consensus 185 N~l~g~iP~~~~~l~~L~ 202 (202)
|++++..+..|.++++|+
T Consensus 91 N~l~~l~~~~~~~l~~L~ 108 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLT 108 (174)
T ss_dssp SCCCCCCTTTTTTCTTCS
T ss_pred CccceeCHHHhccccCCC
Confidence 999955555588888774
No 111
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.46 E-value=4.1e-13 Score=112.88 Aligned_cols=112 Identities=29% Similarity=0.423 Sum_probs=57.3
Q ss_pred cEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEee
Q 035702 80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVG 159 (202)
Q Consensus 80 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~ 159 (202)
.++.|++++|.+.+. ++ +..+++|++|++++|.+++..+ +..+++|+.|++++|.+++..| +..+++|+.|+++
T Consensus 266 ~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 266 KLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFY 339 (466)
T ss_dssp TCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECC
T ss_pred CCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECC
Confidence 444555555555442 22 4455555555555555553222 4455555555555555554333 4455555555555
Q ss_pred cccCcccCChhccCCCCCceeeccccccccccChhccCCCCC
Q 035702 160 NNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201 (202)
Q Consensus 160 ~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L 201 (202)
+|++++. +.+..+++|+.|++++|++++..| +..+++|
T Consensus 340 ~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 377 (466)
T 1o6v_A 340 NNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRI 377 (466)
T ss_dssp SSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTC
T ss_pred CCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCC
Confidence 5555532 345555666666666666655444 4444444
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.46 E-value=3.4e-13 Score=117.10 Aligned_cols=114 Identities=30% Similarity=0.415 Sum_probs=66.8
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
.+++.|+|++|.+.+ + +.+..+++|+.|++++|.+++ + +.+..+++|+.|+|++|.+++. ..+..+++|+.|+|
T Consensus 87 ~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~L 160 (605)
T 1m9s_A 87 KNLGWLFLDENKIKD-L-SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSL 160 (605)
T ss_dssp TTCCEEECCSSCCCC-C-TTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEEC
T ss_pred CCCCEEECcCCCCCC-C-hhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEEC
Confidence 345555555555554 2 245555666666666666553 2 2355666666666666666632 45666667777777
Q ss_pred ecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702 159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202 (202)
Q Consensus 159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~ 202 (202)
++|.+++..| +..+++|+.|+|++|.+++ +| .+..+++|+
T Consensus 161 s~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~ 200 (605)
T 1m9s_A 161 EDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLD 200 (605)
T ss_dssp CSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCS
T ss_pred cCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCC
Confidence 7776664333 6666777777777777763 33 456666553
No 113
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.45 E-value=4e-16 Score=117.05 Aligned_cols=118 Identities=24% Similarity=0.287 Sum_probs=100.9
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
.+++.|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++ +| .+..+++|++|++
T Consensus 48 ~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l 122 (198)
T 1ds9_A 48 KACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYM 122 (198)
T ss_dssp TTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEE
T ss_pred CCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEEC
Confidence 578999999999988 66 7889999999999999998 778877778999999999999994 66 6888999999999
Q ss_pred ecccCcccCC--hhccCCCCCceeeccccccccccChh----------ccCCCCCC
Q 035702 159 GNNKLEGQIP--KEIGSLLKLQTLALYYNYLTRQLPDF----------IGNLSALE 202 (202)
Q Consensus 159 ~~n~~~g~~p--~~~~~l~~L~~L~l~~N~l~g~iP~~----------~~~l~~L~ 202 (202)
++|.+++ ++ ..+..+++|++|++++|.+++.+|.. +..+++|+
T Consensus 123 ~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~ 177 (198)
T 1ds9_A 123 SNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK 177 (198)
T ss_dssp SEEECCC-HHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCS
T ss_pred CCCcCCc-hhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcE
Confidence 9999984 33 36889999999999999998776653 66666654
No 114
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.45 E-value=1.6e-14 Score=116.20 Aligned_cols=122 Identities=18% Similarity=0.236 Sum_probs=58.6
Q ss_pred cEEEEEcCCCCCccccCccccCCCCCcEEEccCC-cCccc-CchhccCCCCCCeEeCCCC-cCccC-cChhccCCC-CCc
Q 035702 80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADN-GFHGE-IPQEIGNLLRLEKLALPNN-SFSGT-IPTNLSRCS-NLI 154 (202)
Q Consensus 80 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~p~~~~~l~~L~~L~ls~n-~l~~~-~p~~l~~l~-~L~ 154 (202)
++++|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|+
T Consensus 119 ~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~ 198 (336)
T 2ast_B 119 KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT 198 (336)
T ss_dssp CCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC
T ss_pred CCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCC
Confidence 3444455544444444444444555555555555 34431 3333444455555555555 44432 334444455 555
Q ss_pred EEEeecc--cCc-ccCChhccCCCCCceeeccccc-cccccChhccCCCCC
Q 035702 155 YFHVGNN--KLE-GQIPKEIGSLLKLQTLALYYNY-LTRQLPDFIGNLSAL 201 (202)
Q Consensus 155 ~L~l~~n--~~~-g~~p~~~~~l~~L~~L~l~~N~-l~g~iP~~~~~l~~L 201 (202)
+|++++| .++ +.+|..+.++++|++|++++|. +++..+..+.++++|
T Consensus 199 ~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L 249 (336)
T 2ast_B 199 QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 249 (336)
T ss_dssp EEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred EEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCC
Confidence 5555555 233 2334444455556666666555 454555555555544
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.44 E-value=6e-13 Score=115.55 Aligned_cols=114 Identities=31% Similarity=0.484 Sum_probs=78.9
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
.+++.|+|++|.+.+.. + +..+++|+.|++++|.+++ +| .+..+++|+.|+|++|.+++ + +.+..+++|+.|+|
T Consensus 65 ~~L~~L~Ls~N~l~~~~-~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~L 138 (605)
T 1m9s_A 65 PNVTKLFLNGNKLTDIK-P-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYL 138 (605)
T ss_dssp TTCCEEECTTSCCCCCG-G-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEEC
T ss_pred CCCCEEEeeCCCCCCCh-h-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEEC
Confidence 56777777777777643 3 6777777777777777763 33 56777777777777777773 3 34677777777777
Q ss_pred ecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702 159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202 (202)
Q Consensus 159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~ 202 (202)
++|.+++ + ..+..+++|+.|+|++|.+++..| +..+++|+
T Consensus 139 s~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~ 178 (605)
T 1m9s_A 139 GNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQ 178 (605)
T ss_dssp CSSCCCC-C-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCC
T ss_pred CCCccCC-c-hhhcccCCCCEEECcCCcCCCchh--hccCCCCC
Confidence 7777774 3 456777777777777777775544 66666653
No 116
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.44 E-value=4.5e-16 Score=116.76 Aligned_cols=117 Identities=21% Similarity=0.302 Sum_probs=96.9
Q ss_pred cEEEEEcCCCCCccccCc------cccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCC
Q 035702 80 RVTELNLSSQRIGGILSP------YVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNL 153 (202)
Q Consensus 80 ~v~~L~l~~~~l~~~~~~------~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L 153 (202)
.++.++++.+.+.|..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 344555555555555554 78999999999999999995 77 7889999999999999999 789888888999
Q ss_pred cEEEeecccCcccCChhccCCCCCceeeccccccccccC--hhccCCCCCC
Q 035702 154 IYFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLP--DFIGNLSALE 202 (202)
Q Consensus 154 ~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP--~~~~~l~~L~ 202 (202)
++|++++|++++ +| .+..+++|++|++++|.+++ +| ..+..+++|+
T Consensus 96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~-~~~~~~l~~l~~L~ 143 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLE 143 (198)
T ss_dssp SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCS
T ss_pred CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc-hhHHHHHhcCCCCC
Confidence 999999999995 55 68899999999999999984 33 4677777764
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.44 E-value=3.3e-13 Score=116.39 Aligned_cols=94 Identities=23% Similarity=0.322 Sum_probs=87.1
Q ss_pred CCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeecc
Q 035702 104 FLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALY 183 (202)
Q Consensus 104 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~ 183 (202)
.|+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..++++++|++|++++|.+++ +| .+..+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 57889999999995 776 999999999999999999 899999999999999999999995 77 89999999999999
Q ss_pred cccccccc-ChhccCCCCCC
Q 035702 184 YNYLTRQL-PDFIGNLSALE 202 (202)
Q Consensus 184 ~N~l~g~i-P~~~~~l~~L~ 202 (202)
+|.+++.. |..++.+++|+
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~ 536 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLV 536 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCC
T ss_pred CCCCCCCCCcHHHhcCCCCC
Confidence 99999776 99999999875
No 118
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.43 E-value=2.2e-14 Score=115.32 Aligned_cols=122 Identities=21% Similarity=0.256 Sum_probs=61.5
Q ss_pred cEEEEEcCCCCCccc-cCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCC-cCccC-cChhccCCCCCcEE
Q 035702 80 RVTELNLSSQRIGGI-LSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNN-SFSGT-IPTNLSRCSNLIYF 156 (202)
Q Consensus 80 ~v~~L~l~~~~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n-~l~~~-~p~~l~~l~~L~~L 156 (202)
+++.|++++|.+.+. ++..+..+++|++|++++|.+++..+..++.+++|++|++++| .+++. ++..+.++++|++|
T Consensus 94 ~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L 173 (336)
T 2ast_B 94 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL 173 (336)
T ss_dssp CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred CCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEE
Confidence 445555555554433 4444455555555555555555445555555555555555555 34432 34444555555555
Q ss_pred Eeecc-cCccc-CChhccCCC-CCceeecccc--ccc-cccChhccCCCCC
Q 035702 157 HVGNN-KLEGQ-IPKEIGSLL-KLQTLALYYN--YLT-RQLPDFIGNLSAL 201 (202)
Q Consensus 157 ~l~~n-~~~g~-~p~~~~~l~-~L~~L~l~~N--~l~-g~iP~~~~~l~~L 201 (202)
++++| .+++. ++..+..++ +|++|++++| .++ +.+|..+.++++|
T Consensus 174 ~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L 224 (336)
T 2ast_B 174 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNL 224 (336)
T ss_dssp ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTC
T ss_pred cCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCC
Confidence 55555 55432 344445555 5555555555 333 3444444444444
No 119
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.43 E-value=7.8e-13 Score=106.76 Aligned_cols=116 Identities=24% Similarity=0.372 Sum_probs=86.9
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
..++.+++++|.+.+..+ +..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ + +.+..+++|++|++
T Consensus 199 ~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l 272 (347)
T 4fmz_A 199 TSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNV 272 (347)
T ss_dssp TTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEEC
T ss_pred CccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEc
Confidence 345555555555554222 6677788888888888874 333 7788888888888888874 3 45788889999999
Q ss_pred ecccCcccCChhccCCCCCceeeccccccccccChhccCCCCCC
Q 035702 159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSALE 202 (202)
Q Consensus 159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L~ 202 (202)
++|.+++ + +.+..+++|+.|++++|.+++..|..++.+++|+
T Consensus 273 ~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 273 GSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp CSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred cCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 9998884 4 4578888999999999999888888888888774
No 120
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.41 E-value=1.4e-12 Score=109.77 Aligned_cols=101 Identities=21% Similarity=0.267 Sum_probs=49.5
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
.+++.|++++|.+++. + +..+++|++|++++|.+++. + ++.+++|++|++++|.+++ +| ++.+++|++|++
T Consensus 64 ~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l 134 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNC 134 (457)
T ss_dssp TTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEEC
Confidence 3445555555555542 2 44455555555555555532 2 4455555555555555553 22 445555555555
Q ss_pred ecccCcccCChhccCCCCCceeecccccccccc
Q 035702 159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQL 191 (202)
Q Consensus 159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~i 191 (202)
++|++++ ++ +..+++|++|++++|...+.+
T Consensus 135 ~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~ 164 (457)
T 3bz5_A 135 ARNTLTE-ID--VSHNTQLTELDCHLNKKITKL 164 (457)
T ss_dssp TTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC
T ss_pred CCCccce-ec--cccCCcCCEEECCCCCccccc
Confidence 5555553 22 445555555555555433344
No 121
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.41 E-value=2.6e-13 Score=117.03 Aligned_cols=104 Identities=25% Similarity=0.370 Sum_probs=51.3
Q ss_pred cEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEee
Q 035702 80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVG 159 (202)
Q Consensus 80 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~ 159 (202)
.++.|++++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|++|+++
T Consensus 121 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls 188 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVS 188 (571)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECC
T ss_pred CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECc
Confidence 45555555555555 333 34556666666666653 443 34556666666666553 444 33 455555555
Q ss_pred cccCcccCChhccCCCCC-------ceeeccccccccccChhccCCCC
Q 035702 160 NNKLEGQIPKEIGSLLKL-------QTLALYYNYLTRQLPDFIGNLSA 200 (202)
Q Consensus 160 ~n~~~g~~p~~~~~l~~L-------~~L~l~~N~l~g~iP~~~~~l~~ 200 (202)
+|+++ .+|. +.. +| +.|++++|+++ .+|..+.++++
T Consensus 189 ~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~ 231 (571)
T 3cvr_A 189 TNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDP 231 (571)
T ss_dssp SSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCT
T ss_pred CCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCC
Confidence 55554 3443 222 33 44444444444 34444444443
No 122
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.40 E-value=1.4e-12 Score=109.74 Aligned_cols=112 Identities=26% Similarity=0.416 Sum_probs=60.6
Q ss_pred cEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEee
Q 035702 80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVG 159 (202)
Q Consensus 80 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~ 159 (202)
+++.|++++|.+.+..+ +..+++|++|++++|.+++. +. +..+++|+.|++++|.+++. +. +..+++|++|+++
T Consensus 244 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~L~ 317 (466)
T 1o6v_A 244 NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDI-SP-ISNLKNLTYLTLY 317 (466)
T ss_dssp TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCC-GG-GGGCTTCSEEECC
T ss_pred CCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCc-hh-hcCCCCCCEEECc
Confidence 44555555555544222 45555555555555555532 22 45556666666666665532 22 5556666666666
Q ss_pred cccCcccCChhccCCCCCceeeccccccccccChhccCCCCC
Q 035702 160 NNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201 (202)
Q Consensus 160 ~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L 201 (202)
+|++++..| +..+++|+.|++++|++++. ..+.++++|
T Consensus 318 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L 355 (466)
T 1o6v_A 318 FNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNI 355 (466)
T ss_dssp SSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred CCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCC
Confidence 666664332 55666666666666666633 245555554
No 123
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.37 E-value=1.7e-12 Score=105.04 Aligned_cols=99 Identities=20% Similarity=0.230 Sum_probs=84.2
Q ss_pred CCccccceeCCC-----------CCcEEEEEcCC-CCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEe
Q 035702 66 LCLWTGVTCGHR-----------HQRVTELNLSS-QRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLA 133 (202)
Q Consensus 66 ~c~w~gv~c~~~-----------~~~v~~L~l~~-~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 133 (202)
.|.|..|.|... ..+++.|+|++ |.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|+
T Consensus 7 ~C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86 (347)
T ss_dssp CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred cccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEe
Confidence 388888888764 14589999996 999997778899999999999999999998888999999999999
Q ss_pred CCCCcCccCcChhccCCCCCcEEEeecccCcc
Q 035702 134 LPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEG 165 (202)
Q Consensus 134 ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g 165 (202)
|++|.+++..+..+..++ |+.|++.+|.+..
T Consensus 87 l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 87 LSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 999999954344455554 9999999999973
No 124
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.37 E-value=9.8e-14 Score=113.93 Aligned_cols=91 Identities=22% Similarity=0.355 Sum_probs=40.1
Q ss_pred ccCCCCCcEEEccCCcCc--c---cCchhccCCCCCCeEeCCCCcCc----cCcChhccCCCCCcEEEeecccCccc---
Q 035702 99 VGNLSFLRYINLADNGFH--G---EIPQEIGNLLRLEKLALPNNSFS----GTIPTNLSRCSNLIYFHVGNNKLEGQ--- 166 (202)
Q Consensus 99 l~~l~~L~~L~l~~n~l~--~---~~p~~~~~l~~L~~L~ls~n~l~----~~~p~~l~~l~~L~~L~l~~n~~~g~--- 166 (202)
+..+++|++|++++|.++ | ..+..+..+++|++|++++|.++ +.+|..+..+++|++|++++|.+++.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 334444444555444444 1 12223444444555555555443 23444444444555555555544432
Q ss_pred -CChhcc--CCCCCceeecccccccc
Q 035702 167 -IPKEIG--SLLKLQTLALYYNYLTR 189 (202)
Q Consensus 167 -~p~~~~--~l~~L~~L~l~~N~l~g 189 (202)
+|..+. ++++|++|++++|.+++
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCH
Confidence 233331 24445555555555443
No 125
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.35 E-value=2.6e-12 Score=104.29 Aligned_cols=101 Identities=18% Similarity=0.219 Sum_probs=81.5
Q ss_pred CCccccceeCCCC---------CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCch-hccCCCCCCe-EeC
Q 035702 66 LCLWTGVTCGHRH---------QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQ-EIGNLLRLEK-LAL 134 (202)
Q Consensus 66 ~c~w~gv~c~~~~---------~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~-L~l 134 (202)
.|.+..|.|.... ..+++|++++|+++...+..|.++++|++|++++|.+.+.+|. .|.++++++. +.+
T Consensus 8 ~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 8 HCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp EEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred EeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 4788888886421 4689999999999985556789999999999999998766664 5778888775 566
Q ss_pred CCCcCccCcChhccCCCCCcEEEeecccCccc
Q 035702 135 PNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQ 166 (202)
Q Consensus 135 s~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~ 166 (202)
..|+++...|..+..+++|++|++++|++++.
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~ 119 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHL 119 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSC
T ss_pred cCCcccccCchhhhhccccccccccccccccC
Confidence 77899866677889999999999999988743
No 126
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.35 E-value=4.1e-13 Score=116.90 Aligned_cols=120 Identities=20% Similarity=0.306 Sum_probs=67.0
Q ss_pred CCCCCCCCCccccce--------eCCCCCcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCC
Q 035702 59 SWNNTINLCLWTGVT--------CGHRHQRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLE 130 (202)
Q Consensus 59 ~W~~~~~~c~w~gv~--------c~~~~~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 130 (202)
.|....++|.|+|.. |.. ..++.|++++++++. +|..+. ++|++|++++|.++ .+|. .+++|+
T Consensus 14 ~W~~~~~~~~~~~r~~~~~~~~~c~~--~~l~~L~ls~n~L~~-lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~ 84 (622)
T 3g06_A 14 AWRRAAPAEESRGRAAVVQKMRACLN--NGNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLT-SLPA---LPPELR 84 (622)
T ss_dssp HHHHTCCGGGHHHHHHHHHHHHHHHH--HCCCEEECCSSCCSC-CCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCC
T ss_pred HHHhcCCcchhccccccCcccccccC--CCCcEEEecCCCcCc-cChhhC--CCCcEEEecCCCCC-CCCC---cCCCCC
Confidence 466666778886542 221 345667777776663 555443 56666666666666 4444 345666
Q ss_pred eEeCCCCcCccCcChhccCCCCCcEEEeecccCcc-------------------cCChhccCCCCCceeecccccccccc
Q 035702 131 KLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEG-------------------QIPKEIGSLLKLQTLALYYNYLTRQL 191 (202)
Q Consensus 131 ~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g-------------------~~p~~~~~l~~L~~L~l~~N~l~g~i 191 (202)
+|++++|.++ .+|. .+++|++|++++|++++ .+|.. +++|++|++++|+++ .+
T Consensus 85 ~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~-~l 156 (622)
T 3g06_A 85 TLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLA-SL 156 (622)
T ss_dssp EEEECSCCCS-CCCC---CCTTCCEEEECSCCCCCCCCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-CC
T ss_pred EEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCCCCCCCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCC-Cc
Confidence 6666666665 4444 44555555555555542 23321 256666666666666 34
Q ss_pred Chhc
Q 035702 192 PDFI 195 (202)
Q Consensus 192 P~~~ 195 (202)
|..+
T Consensus 157 ~~~~ 160 (622)
T 3g06_A 157 PALP 160 (622)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 4433
No 127
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.35 E-value=1.1e-13 Score=113.57 Aligned_cols=88 Identities=18% Similarity=0.262 Sum_probs=43.4
Q ss_pred CCCcEEEccCCcCc-ccCc---hhccCCCCCCeEeCCCCcCcc-----CcChhccCCCCCcEEEeecccCc----ccCCh
Q 035702 103 SFLRYINLADNGFH-GEIP---QEIGNLLRLEKLALPNNSFSG-----TIPTNLSRCSNLIYFHVGNNKLE----GQIPK 169 (202)
Q Consensus 103 ~~L~~L~l~~n~l~-~~~p---~~~~~l~~L~~L~ls~n~l~~-----~~p~~l~~l~~L~~L~l~~n~~~----g~~p~ 169 (202)
++|++|++++|.++ +.++ ..+..+++|++|++++|.++. ..|..+..+++|++|++++|.++ +.+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 44445555554443 2222 233344555555555555541 12224455555555555555553 34455
Q ss_pred hccCCCCCceeeccccccccc
Q 035702 170 EIGSLLKLQTLALYYNYLTRQ 190 (202)
Q Consensus 170 ~~~~l~~L~~L~l~~N~l~g~ 190 (202)
.+..+++|++|++++|.+++.
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~ 259 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSAR 259 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHH
T ss_pred HHccCCCcCEEECCCCCCchh
Confidence 555555566666666655543
No 128
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.34 E-value=5e-12 Score=106.34 Aligned_cols=100 Identities=21% Similarity=0.229 Sum_probs=46.2
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
..++.+++++|...+.+ .+..+++|++|++++|.+++ +| +..+++|+.|++++|.+++. .++.+++|++|++
T Consensus 148 ~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~L 219 (457)
T 3bz5_A 148 TQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDC 219 (457)
T ss_dssp TTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEEC
T ss_pred CcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEEC
Confidence 34455555555333322 24444555555555555543 22 44444455555555544432 2444444444555
Q ss_pred ecccCcccCChhccCCCCCceeecccccccc
Q 035702 159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTR 189 (202)
Q Consensus 159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g 189 (202)
++|++++ +| +..+++|+.|++++|++++
T Consensus 220 s~N~l~~-ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 220 SSNKLTE-ID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp CSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred cCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence 4444443 33 4444444444444444443
No 129
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.32 E-value=2.8e-12 Score=107.81 Aligned_cols=88 Identities=28% Similarity=0.426 Sum_probs=43.4
Q ss_pred CCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcc--cCChhccCC------
Q 035702 103 SFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEG--QIPKEIGSL------ 174 (202)
Q Consensus 103 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g--~~p~~~~~l------ 174 (202)
++|++|++++|.+++ +|.. +++|++|++++|.++ .+|. .+++|++|++++|++++ .+|..+..+
T Consensus 317 ~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~ 388 (454)
T 1jl5_A 317 PSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHL 388 (454)
T ss_dssp TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--
T ss_pred CcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccc
Confidence 356666666666663 4432 467777777777777 5665 46778888888888877 677776666
Q ss_pred -------CCCceeecccccccc--ccChhccCC
Q 035702 175 -------LKLQTLALYYNYLTR--QLPDFIGNL 198 (202)
Q Consensus 175 -------~~L~~L~l~~N~l~g--~iP~~~~~l 198 (202)
++|++|++++|++++ .+|.++.++
T Consensus 389 ~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L 421 (454)
T 1jl5_A 389 AEVPELPQNLKQLHVETNPLREFPDIPESVEDL 421 (454)
T ss_dssp ---------------------------------
T ss_pred cccccccCcCCEEECCCCcCCccccchhhHhhe
Confidence 678888888888876 777666554
No 130
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.31 E-value=1.2e-11 Score=103.97 Aligned_cols=109 Identities=28% Similarity=0.414 Sum_probs=60.4
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEe
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHV 158 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l 158 (202)
.+++.|++++|.+++ +| .+..+++|++|++++|.+++ +|.. ..+|++|++++|.+++ +| .++++++|++|++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 356666666666665 45 46667777777777776663 4432 2356666666666663 45 4566666666666
Q ss_pred ecccCcccCChhccCCCCCceeeccccccccccChhccCCCCC
Q 035702 159 GNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201 (202)
Q Consensus 159 ~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L 201 (202)
++|.+++ +|... ++|++|++++|.++ .+|. ++++++|
T Consensus 203 ~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~-~~~l~~L 239 (454)
T 1jl5_A 203 DNNSLKK-LPDLP---LSLESIVAGNNILE-ELPE-LQNLPFL 239 (454)
T ss_dssp CSSCCSS-CCCCC---TTCCEEECCSSCCS-SCCC-CTTCTTC
T ss_pred CCCcCCc-CCCCc---CcccEEECcCCcCC-cccc-cCCCCCC
Confidence 6666653 33211 24444444444444 4442 4444443
No 131
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.29 E-value=7.6e-13 Score=107.87 Aligned_cols=116 Identities=21% Similarity=0.221 Sum_probs=81.0
Q ss_pred cEEEEEcCCCCCccccCccccCC-----CCCcEEEccCCcCcccCchhc----cCC-CCCCeEeCCCCcCccCcChhc--
Q 035702 80 RVTELNLSSQRIGGILSPYVGNL-----SFLRYINLADNGFHGEIPQEI----GNL-LRLEKLALPNNSFSGTIPTNL-- 147 (202)
Q Consensus 80 ~v~~L~l~~~~l~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~p~~~----~~l-~~L~~L~ls~n~l~~~~p~~l-- 147 (202)
++++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+ ..+ ++|++|++++|.+++..+..+
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 68888888888877655555554 788888888888876655543 333 788888888888875544443
Q ss_pred --cC-CCCCcEEEeecccCcccC----ChhccCCC-CCceeeccccccccccChhc
Q 035702 148 --SR-CSNLIYFHVGNNKLEGQI----PKEIGSLL-KLQTLALYYNYLTRQLPDFI 195 (202)
Q Consensus 148 --~~-l~~L~~L~l~~n~~~g~~----p~~~~~l~-~L~~L~l~~N~l~g~iP~~~ 195 (202)
.. .++|++|++++|.+++.. +..+..++ +|++|++++|++++..+..+
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 187 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAEL 187 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHH
Confidence 33 258888888888887533 33445555 88888888888876665443
No 132
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.28 E-value=7.4e-12 Score=109.02 Aligned_cols=85 Identities=22% Similarity=0.274 Sum_probs=49.9
Q ss_pred CCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeec
Q 035702 103 SFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLAL 182 (202)
Q Consensus 103 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l 182 (202)
++|+.|++++|.+++ +| ..+++|++|++++|.++ .+|. .+++|++|++++|+++ .+|..+.++++|+.|++
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 345555555555552 33 23455666666666665 4454 4456666666666666 56666666666777777
Q ss_pred cccccccccChhcc
Q 035702 183 YYNYLTRQLPDFIG 196 (202)
Q Consensus 183 ~~N~l~g~iP~~~~ 196 (202)
++|.+++.+|..+.
T Consensus 292 ~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 292 EGNPLSERTLQALR 305 (622)
T ss_dssp CSCCCCHHHHHHHH
T ss_pred cCCCCCCcCHHHHH
Confidence 77766666655443
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.26 E-value=2.2e-12 Score=105.17 Aligned_cols=113 Identities=20% Similarity=0.215 Sum_probs=92.1
Q ss_pred CcEEEEEcCCCCCccccC----ccccCCC-CCcEEEccCCcCcccCchhccCC-----CCCCeEeCCCCcCccCcChhc-
Q 035702 79 QRVTELNLSSQRIGGILS----PYVGNLS-FLRYINLADNGFHGEIPQEIGNL-----LRLEKLALPNNSFSGTIPTNL- 147 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~----~~l~~l~-~L~~L~l~~n~l~~~~p~~~~~l-----~~L~~L~ls~n~l~~~~p~~l- 147 (202)
..++.|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 459999999999988655 6678888 89999999999998777777665 999999999999997666544
Q ss_pred ---cCC-CCCcEEEeecccCcccCChhc----cC-CCCCceeecccccccccc
Q 035702 148 ---SRC-SNLIYFHVGNNKLEGQIPKEI----GS-LLKLQTLALYYNYLTRQL 191 (202)
Q Consensus 148 ---~~l-~~L~~L~l~~n~~~g~~p~~~----~~-l~~L~~L~l~~N~l~g~i 191 (202)
..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+++..
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 154 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS 154 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH
Confidence 444 899999999999986655443 34 359999999999998533
No 134
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.23 E-value=2.5e-11 Score=98.44 Aligned_cols=110 Identities=13% Similarity=0.020 Sum_probs=89.4
Q ss_pred EEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcCh-hccCCCCCcE-EEeec
Q 035702 83 ELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPT-NLSRCSNLIY-FHVGN 160 (202)
Q Consensus 83 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~-~l~~l~~L~~-L~l~~ 160 (202)
.++.++++++. +|..+ .+++++|++++|.++...+..|.++++|++|+|++|.+.+.+|. .+.+++++.. +.+..
T Consensus 13 ~v~C~~~~Lt~-iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCCS-CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCCc-cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 57888999886 67655 36899999999999944445789999999999999998767774 5788988775 66777
Q ss_pred ccCcccCChhccCCCCCceeeccccccccccChhc
Q 035702 161 NKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFI 195 (202)
Q Consensus 161 n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~ 195 (202)
|+++...|..+..+++|++|++++|++++..+..+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~ 124 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 124 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTT
T ss_pred CcccccCchhhhhccccccccccccccccCCchhh
Confidence 99996667789999999999999999985444433
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.22 E-value=7.2e-13 Score=110.74 Aligned_cols=123 Identities=21% Similarity=0.177 Sum_probs=57.4
Q ss_pred CcEEEEEcCCCCCccc----cCccccCCCCCcEEEccCCcCcccCchhccC-----CCCCCeEeCCCCcCccC----cCh
Q 035702 79 QRVTELNLSSQRIGGI----LSPYVGNLSFLRYINLADNGFHGEIPQEIGN-----LLRLEKLALPNNSFSGT----IPT 145 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~-----l~~L~~L~ls~n~l~~~----~p~ 145 (202)
.+++.|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++. ++.
T Consensus 256 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 335 (461)
T 1z7x_W 256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS 335 (461)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHH
Confidence 3455556665555542 3344444555666666665554332222211 13455555555555432 333
Q ss_pred hccCCCCCcEEEeecccCcccCChhccC-----CCCCceeecccccccc----ccChhccCCCCC
Q 035702 146 NLSRCSNLIYFHVGNNKLEGQIPKEIGS-----LLKLQTLALYYNYLTR----QLPDFIGNLSAL 201 (202)
Q Consensus 146 ~l~~l~~L~~L~l~~n~~~g~~p~~~~~-----l~~L~~L~l~~N~l~g----~iP~~~~~l~~L 201 (202)
.+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++ .+|..+..+++|
T Consensus 336 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L 400 (461)
T 1z7x_W 336 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL 400 (461)
T ss_dssp HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCc
Confidence 4444455555555555554332222221 3455555555555553 444444444443
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.14 E-value=2.3e-12 Score=107.69 Aligned_cols=112 Identities=16% Similarity=0.167 Sum_probs=90.4
Q ss_pred CcEEEEEcCCCCCccccCcccc-----CCCCCcEEEccCCcCccc----CchhccCCCCCCeEeCCCCcCccCcChhccC
Q 035702 79 QRVTELNLSSQRIGGILSPYVG-----NLSFLRYINLADNGFHGE----IPQEIGNLLRLEKLALPNNSFSGTIPTNLSR 149 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~-----~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~ 149 (202)
..++.|++++|.+.+..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..
T Consensus 284 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 363 (461)
T 1z7x_W 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 363 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHH
T ss_pred CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHH
Confidence 5789999999998764333332 236899999999999865 4566777899999999999998665554432
Q ss_pred -----CCCCcEEEeecccCcc----cCChhccCCCCCceeeccccccccc
Q 035702 150 -----CSNLIYFHVGNNKLEG----QIPKEIGSLLKLQTLALYYNYLTRQ 190 (202)
Q Consensus 150 -----l~~L~~L~l~~n~~~g----~~p~~~~~l~~L~~L~l~~N~l~g~ 190 (202)
.++|++|++++|.+++ .+|..+..+++|++|++++|++++.
T Consensus 364 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 364 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred HHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 6799999999999986 6788888899999999999999854
No 137
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=99.06 E-value=7.5e-12 Score=97.97 Aligned_cols=67 Identities=25% Similarity=0.363 Sum_probs=52.9
Q ss_pred cCCCCCCeEeCCCCcCcc--CcChhccCCCCCcEEEeecccCcccCChhccCCC--CCceeeccccccccccC
Q 035702 124 GNLLRLEKLALPNNSFSG--TIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLL--KLQTLALYYNYLTRQLP 192 (202)
Q Consensus 124 ~~l~~L~~L~ls~n~l~~--~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~--~L~~L~l~~N~l~g~iP 192 (202)
.++++|+.|+|++|.+++ .+|..+..+++|+.|+|++|++++. ..+..+. +|++|++++|.+++.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 457889999999999986 5566777889999999999999853 3344444 89999999999987776
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.97 E-value=1.3e-10 Score=95.33 Aligned_cols=111 Identities=17% Similarity=0.279 Sum_probs=64.9
Q ss_pred cEEEEEcCCCCCccccCccc-----cCCCCCcEEEccCCcCccc----CchhccCCCCCCeEeCCCCcCccC----cChh
Q 035702 80 RVTELNLSSQRIGGILSPYV-----GNLSFLRYINLADNGFHGE----IPQEIGNLLRLEKLALPNNSFSGT----IPTN 146 (202)
Q Consensus 80 ~v~~L~l~~~~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~----~p~~ 146 (202)
+++.|++++|.++..-...+ ...++|++|++++|.++.. ++..+...++|++|+|++|.+++. ++..
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~ 206 (372)
T 3un9_A 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ 206 (372)
T ss_dssp TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence 35556666665543222222 2345677777777776532 333445566777777777776642 2445
Q ss_pred ccCCCCCcEEEeecccCccc----CChhccCCCCCceeeccccccccc
Q 035702 147 LSRCSNLIYFHVGNNKLEGQ----IPKEIGSLLKLQTLALYYNYLTRQ 190 (202)
Q Consensus 147 l~~l~~L~~L~l~~n~~~g~----~p~~~~~l~~L~~L~l~~N~l~g~ 190 (202)
+...++|++|++++|.++.. ++..+...++|++|++++|.++..
T Consensus 207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 55666777777777777632 233344556777777777777644
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.91 E-value=1.3e-10 Score=95.21 Aligned_cols=111 Identities=17% Similarity=0.205 Sum_probs=84.2
Q ss_pred CcEEEEEcCCCCCccccCccc-cCCCCCcEEEccCCcCcccCchhc-----cCCCCCCeEeCCCCcCcc----CcChhcc
Q 035702 79 QRVTELNLSSQRIGGILSPYV-GNLSFLRYINLADNGFHGEIPQEI-----GNLLRLEKLALPNNSFSG----TIPTNLS 148 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~p~~~-----~~l~~L~~L~ls~n~l~~----~~p~~l~ 148 (202)
..+++|++++|.++..-...+ ..+.+|++|++++|.++......+ ...++|++|++++|.++. .++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 579999999999875433222 245678999999999875444333 346789999999999874 2445567
Q ss_pred CCCCCcEEEeecccCccc----CChhccCCCCCceeecccccccc
Q 035702 149 RCSNLIYFHVGNNKLEGQ----IPKEIGSLLKLQTLALYYNYLTR 189 (202)
Q Consensus 149 ~l~~L~~L~l~~n~~~g~----~p~~~~~l~~L~~L~l~~N~l~g 189 (202)
..++|++|+|++|.+++. ++..+...++|++|++++|.++.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 889999999999998742 34566777899999999999974
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.79 E-value=1.3e-09 Score=93.64 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=20.0
Q ss_pred CChhccCCCCCceeeccccccccccC-hhccCCCCC
Q 035702 167 IPKEIGSLLKLQTLALYYNYLTRQLP-DFIGNLSAL 201 (202)
Q Consensus 167 ~p~~~~~l~~L~~L~l~~N~l~g~iP-~~~~~l~~L 201 (202)
+|..+..+++|++|++++|.+++... ..+..+++|
T Consensus 285 l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L 320 (592)
T 3ogk_B 285 MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320 (592)
T ss_dssp GGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred HHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence 44445566677777777777654433 234555554
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.75 E-value=4.3e-10 Score=96.66 Aligned_cols=122 Identities=10% Similarity=0.113 Sum_probs=73.8
Q ss_pred CcEEEEEcCCCCCccccCccccC-C-CCCcEEEccCCc-Ccc-cCchhccCCCCCCeEeCCCCcCccC----cChhccCC
Q 035702 79 QRVTELNLSSQRIGGILSPYVGN-L-SFLRYINLADNG-FHG-EIPQEIGNLLRLEKLALPNNSFSGT----IPTNLSRC 150 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~-l-~~L~~L~l~~n~-l~~-~~p~~~~~l~~L~~L~ls~n~l~~~----~p~~l~~l 150 (202)
.++++|+++++.+++..+..+.. + .+|++|++++|. ++. .++.....+++|++|++++|.+++. ++.....+
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~ 191 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN 191 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHC
T ss_pred CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcC
Confidence 45777888877776554444443 2 237777777665 211 1222233567777777777776654 33344566
Q ss_pred CCCcEEEeecccCc----ccCChhccCCCCCceeeccccccccccChhccCCCCC
Q 035702 151 SNLIYFHVGNNKLE----GQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201 (202)
Q Consensus 151 ~~L~~L~l~~n~~~----g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L 201 (202)
++|++|++++|.++ +.++..+.++++|+.|++++|.+.+ +|..+.++++|
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L 245 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANL 245 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTC
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHH
Confidence 77777777777776 2334445567777777777777763 55555555544
No 142
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.75 E-value=7.6e-09 Score=80.90 Aligned_cols=80 Identities=20% Similarity=0.238 Sum_probs=65.9
Q ss_pred cCCCCCcEEEccCCcCcc--cCchhccCCCCCCeEeCCCCcCccCcChhccCCC--CCcEEEeecccCcccCCh------
Q 035702 100 GNLSFLRYINLADNGFHG--EIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCS--NLIYFHVGNNKLEGQIPK------ 169 (202)
Q Consensus 100 ~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~--~L~~L~l~~n~~~g~~p~------ 169 (202)
..+++|+.|+|++|.+++ .+|..+..+++|+.|+|++|.+++. ..+..+. +|++|+|.+|.+.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 357899999999999997 5567777899999999999999954 3344444 999999999999987763
Q ss_pred -hccCCCCCceee
Q 035702 170 -EIGSLLKLQTLA 181 (202)
Q Consensus 170 -~~~~l~~L~~L~ 181 (202)
.+..+|+|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 367889999987
No 143
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.69 E-value=4e-09 Score=78.05 Aligned_cols=110 Identities=14% Similarity=0.192 Sum_probs=86.8
Q ss_pred CcEEEEEcCCC-CCccc----cCccccCCCCCcEEEccCCcCccc----CchhccCCCCCCeEeCCCCcCccC----cCh
Q 035702 79 QRVTELNLSSQ-RIGGI----LSPYVGNLSFLRYINLADNGFHGE----IPQEIGNLLRLEKLALPNNSFSGT----IPT 145 (202)
Q Consensus 79 ~~v~~L~l~~~-~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~----~p~ 145 (202)
..+++|++++| .+... +...+...++|++|++++|.+... +...+...++|++|+|++|.++.. +..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 67899999999 88742 345567778999999999999743 334455668999999999999853 456
Q ss_pred hccCCCCCcEEEe--ecccCccc----CChhccCCCCCceeeccccccc
Q 035702 146 NLSRCSNLIYFHV--GNNKLEGQ----IPKEIGSLLKLQTLALYYNYLT 188 (202)
Q Consensus 146 ~l~~l~~L~~L~l--~~n~~~g~----~p~~~~~l~~L~~L~l~~N~l~ 188 (202)
.+...++|++|++ ++|.++.. +...+...+.|++|++++|.+.
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 6777889999999 88999743 3345566789999999999885
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.67 E-value=7.7e-08 Score=77.12 Aligned_cols=99 Identities=13% Similarity=0.080 Sum_probs=82.9
Q ss_pred CCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCc-EEEeecccCcccCChhccCCCCCcee
Q 035702 102 LSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLI-YFHVGNNKLEGQIPKEIGSLLKLQTL 180 (202)
Q Consensus 102 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~-~L~l~~n~~~g~~p~~~~~l~~L~~L 180 (202)
+++|+.+++++|.++..-+..|.++++|+.+++.+| ++..-+..|.++++|+ .+++.+ .++..-+..|.++++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 789999999999999555567999999999999998 7744446789999999 999988 6763445689999999999
Q ss_pred eccccccccccChhccCCCCCC
Q 035702 181 ALYYNYLTRQLPDFIGNLSALE 202 (202)
Q Consensus 181 ~l~~N~l~g~iP~~~~~l~~L~ 202 (202)
++++|.++..-+..|.++++|+
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSK 324 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCC
T ss_pred EeCCCccCccchhhhcCCcchh
Confidence 9999999855556898998875
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.62 E-value=3.9e-09 Score=90.65 Aligned_cols=122 Identities=13% Similarity=0.192 Sum_probs=84.1
Q ss_pred CcEEEEEcCCCCCccccCcccc-CCCCCcEEEccCC-cCccc-CchhccCCCCCCeEeCCCCcCccCcChhc----cCCC
Q 035702 79 QRVTELNLSSQRIGGILSPYVG-NLSFLRYINLADN-GFHGE-IPQEIGNLLRLEKLALPNNSFSGTIPTNL----SRCS 151 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n-~l~~~-~p~~~~~l~~L~~L~ls~n~l~~~~p~~l----~~l~ 151 (202)
.++++|+++++.+++..+..+. .+++|++|++++| .++.. ++..+..+++|++|++++|.+++..+..+ ..++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 5788999999988876665564 6889999999988 55532 34444578899999999998876544433 3667
Q ss_pred CCcEEEeeccc--Ccc-cCChhccCCCCCceeecccc-ccccccChhccCCCCC
Q 035702 152 NLIYFHVGNNK--LEG-QIPKEIGSLLKLQTLALYYN-YLTRQLPDFIGNLSAL 201 (202)
Q Consensus 152 ~L~~L~l~~n~--~~g-~~p~~~~~l~~L~~L~l~~N-~l~g~iP~~~~~l~~L 201 (202)
+|++|++++|. ++. .++....++++|++|++++| .+. .+|..+.++++|
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L 237 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQL 237 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTC
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcc
Confidence 89999998886 221 11222345688899998887 343 356555555544
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.61 E-value=1.3e-07 Score=75.87 Aligned_cols=102 Identities=20% Similarity=0.199 Sum_probs=86.8
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCC-eEeCCCCcCccCcChhccCCCCCcEEE
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLE-KLALPNNSFSGTIPTNLSRCSNLIYFH 157 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~-~L~ls~n~l~~~~p~~l~~l~~L~~L~ 157 (202)
..++.+++++|+++......|..+.+|+.+++.+| ++..-+..|.++++|+ .+++.+ .++..-+..|.++++|+.++
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence 57899999999999866678999999999999998 7745567899999999 999998 77744458899999999999
Q ss_pred eecccCcccCChhccCCCCCceeec
Q 035702 158 VGNNKLEGQIPKEIGSLLKLQTLAL 182 (202)
Q Consensus 158 l~~n~~~g~~p~~~~~l~~L~~L~l 182 (202)
+.+|.++..-+..|.++++|+.++.
T Consensus 304 l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 304 ATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred eCCCccCccchhhhcCCcchhhhcc
Confidence 9999998444557899999998863
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.51 E-value=6.7e-09 Score=89.19 Aligned_cols=86 Identities=15% Similarity=0.161 Sum_probs=40.9
Q ss_pred CCCCcEEEccCCcCcccCchhccC-CCCCCeEeCCCCcCccCcChhc-cCCCCCcEEEeecccCcccCCh-hccCCCCCc
Q 035702 102 LSFLRYINLADNGFHGEIPQEIGN-LLRLEKLALPNNSFSGTIPTNL-SRCSNLIYFHVGNNKLEGQIPK-EIGSLLKLQ 178 (202)
Q Consensus 102 l~~L~~L~l~~n~l~~~~p~~~~~-l~~L~~L~ls~n~l~~~~p~~l-~~l~~L~~L~l~~n~~~g~~p~-~~~~l~~L~ 178 (202)
+++|++|++++ .+++..+..+.. +++|++|++++|.+++..+..+ ..+++|++|++++|.+++..+. ....+++|+
T Consensus 431 ~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 509 (594)
T 2p1m_B 431 CKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMR 509 (594)
T ss_dssp CTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSS
T ss_pred CCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCC
Confidence 34444444433 333222223332 4555555555555554333333 4455666666666665432222 223455666
Q ss_pred eeeccccccc
Q 035702 179 TLALYYNYLT 188 (202)
Q Consensus 179 ~L~l~~N~l~ 188 (202)
+|++++|+++
T Consensus 510 ~L~l~~~~~~ 519 (594)
T 2p1m_B 510 SLWMSSCSVS 519 (594)
T ss_dssp EEEEESSCCB
T ss_pred EEeeeCCCCC
Confidence 6666666554
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.40 E-value=5e-08 Score=72.06 Aligned_cols=96 Identities=16% Similarity=0.138 Sum_probs=75.2
Q ss_pred cCccccCCCCCcEEEccCC-cCccc----CchhccCCCCCCeEeCCCCcCccC----cChhccCCCCCcEEEeecccCcc
Q 035702 95 LSPYVGNLSFLRYINLADN-GFHGE----IPQEIGNLLRLEKLALPNNSFSGT----IPTNLSRCSNLIYFHVGNNKLEG 165 (202)
Q Consensus 95 ~~~~l~~l~~L~~L~l~~n-~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~----~p~~l~~l~~L~~L~l~~n~~~g 165 (202)
+...+...+.|++|++++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.++.
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 4455677899999999999 88642 344566778999999999999853 34455666899999999999974
Q ss_pred c----CChhccCCCCCceeec--cccccccc
Q 035702 166 Q----IPKEIGSLLKLQTLAL--YYNYLTRQ 190 (202)
Q Consensus 166 ~----~p~~~~~l~~L~~L~l--~~N~l~g~ 190 (202)
. +...+...+.|++|++ ++|.++..
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~ 138 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNN 138 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHH
Confidence 3 3456777889999999 88998743
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.24 E-value=6.3e-07 Score=65.56 Aligned_cols=84 Identities=12% Similarity=0.167 Sum_probs=53.6
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCc-CcccCchhccCC----CCCCeEeCCCCc-CccCcChhccCCCC
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNG-FHGEIPQEIGNL----LRLEKLALPNNS-FSGTIPTNLSRCSN 152 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~p~~~~~l----~~L~~L~ls~n~-l~~~~p~~l~~l~~ 152 (202)
-++++|+++++.++..--..+..+++|++|+++++. ++..--..+..+ ++|++|+++++. ++..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 357777777777665444556677777777777773 554433444443 357777777763 66544455666777
Q ss_pred CcEEEeeccc
Q 035702 153 LIYFHVGNNK 162 (202)
Q Consensus 153 L~~L~l~~n~ 162 (202)
|++|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777764
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.22 E-value=6e-07 Score=73.19 Aligned_cols=108 Identities=17% Similarity=0.211 Sum_probs=60.8
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhcc--CCCCCCeEeCCC--CcCccC-----cChhc--
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIG--NLLRLEKLALPN--NSFSGT-----IPTNL-- 147 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~--~l~~L~~L~ls~--n~l~~~-----~p~~l-- 147 (202)
+++++|+++++.- -.+++ + ..++|++|++..+.++......+. .+++|+.|+|+. |...+. +...+
T Consensus 172 P~L~~L~L~g~~~-l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~ 248 (362)
T 2ra8_A 172 PLLNNLKIKGTNN-LSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK 248 (362)
T ss_dssp TTCCEEEEECCBT-CBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred CCCcEEEEeCCCC-ceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence 5678888877621 11232 3 266777777777766543333333 567777777642 211111 11112
Q ss_pred cCCCCCcEEEeecccCcccCChhcc---CCCCCceeecccccccc
Q 035702 148 SRCSNLIYFHVGNNKLEGQIPKEIG---SLLKLQTLALYYNYLTR 189 (202)
Q Consensus 148 ~~l~~L~~L~l~~n~~~g~~p~~~~---~l~~L~~L~l~~N~l~g 189 (202)
..+++|++|++.+|.+.+..+..+. .+++|++|+++.|.+++
T Consensus 249 ~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp TTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred CCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 2467777777777777643333332 46677777777777764
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.19 E-value=2.4e-07 Score=75.59 Aligned_cols=111 Identities=13% Similarity=0.185 Sum_probs=78.2
Q ss_pred CcEEEEEcCCCCCccccCcccc--CCCCCcEEEccC--CcCccc-----Cchhc--cCCCCCCeEeCCCCcCccCcChhc
Q 035702 79 QRVTELNLSSQRIGGILSPYVG--NLSFLRYINLAD--NGFHGE-----IPQEI--GNLLRLEKLALPNNSFSGTIPTNL 147 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~--~l~~L~~L~l~~--n~l~~~-----~p~~~--~~l~~L~~L~ls~n~l~~~~p~~l 147 (202)
.+++.|++..+.+.......+. .+++|++|+|+. |...+. +...+ ..+++|++|++.+|.+.+..+..+
T Consensus 193 ~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~l 272 (362)
T 2ra8_A 193 PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF 272 (362)
T ss_dssp TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHH
T ss_pred CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHH
Confidence 5788999988877654333343 689999999863 221111 11122 357999999999999886444333
Q ss_pred ---cCCCCCcEEEeecccCccc----CChhccCCCCCceeecccccccc
Q 035702 148 ---SRCSNLIYFHVGNNKLEGQ----IPKEIGSLLKLQTLALYYNYLTR 189 (202)
Q Consensus 148 ---~~l~~L~~L~l~~n~~~g~----~p~~~~~l~~L~~L~l~~N~l~g 189 (202)
..+++|++|+|+.|.+++. ++..+.++++|+.|++++|.++.
T Consensus 273 a~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 273 LESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp HHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 3578999999999999853 33444567899999999998874
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.17 E-value=1.3e-06 Score=63.82 Aligned_cols=94 Identities=13% Similarity=0.024 Sum_probs=71.5
Q ss_pred cCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCc-CccCcChhccCC----CCCcEEEeeccc-CcccCC
Q 035702 95 LSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNS-FSGTIPTNLSRC----SNLIYFHVGNNK-LEGQIP 168 (202)
Q Consensus 95 ~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~-l~~~~p~~l~~l----~~L~~L~l~~n~-~~g~~p 168 (202)
+|.....-..|+.||++++.++..--..+..+++|+.|+|+++. +++.--..++.+ ++|++|++++|. ++..--
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 34333233469999999999986666678899999999999995 776555566664 479999999985 774333
Q ss_pred hhccCCCCCceeeccccc-cc
Q 035702 169 KEIGSLLKLQTLALYYNY-LT 188 (202)
Q Consensus 169 ~~~~~l~~L~~L~l~~N~-l~ 188 (202)
..+.++++|++|+++++. ++
T Consensus 133 ~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HHGGGCTTCCEEEEESCTTCC
T ss_pred HHHhcCCCCCEEECCCCCCCC
Confidence 457789999999999874 54
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.96 E-value=4e-05 Score=63.16 Aligned_cols=115 Identities=10% Similarity=0.045 Sum_probs=78.3
Q ss_pred cEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCc-----ccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCc
Q 035702 80 RVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFH-----GEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLI 154 (202)
Q Consensus 80 ~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~-----~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~ 154 (202)
.++.+.+ .++++..-...|..+++|+.+++.+|.+. ..-+..|.++++|+.+++.+ .++..-...|.++++|+
T Consensus 249 ~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~ 326 (401)
T 4fdw_A 249 GITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVT 326 (401)
T ss_dssp CCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCC
T ss_pred CccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCcc
Confidence 3455555 23444444566788888999888887664 23345678888899998884 46633346778889999
Q ss_pred EEEeecccCcccCChhccCCCCCceeeccccccccccChhccCC
Q 035702 155 YFHVGNNKLEGQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNL 198 (202)
Q Consensus 155 ~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l 198 (202)
.+.+..| ++..-+..|.++ +|+.+++.+|.+....+..|..+
T Consensus 327 ~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~ 368 (401)
T 4fdw_A 327 QLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGF 368 (401)
T ss_dssp EEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred EEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence 9999655 552334567788 89999999988764444555554
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.85 E-value=0.00013 Score=60.13 Aligned_cols=55 Identities=11% Similarity=0.080 Sum_probs=26.4
Q ss_pred hccCCCCCcEEEeecccCc-----ccCChhccCCCCCceeeccccccccccChhccCCCCC
Q 035702 146 NLSRCSNLIYFHVGNNKLE-----GQIPKEIGSLLKLQTLALYYNYLTRQLPDFIGNLSAL 201 (202)
Q Consensus 146 ~l~~l~~L~~L~l~~n~~~-----g~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~~~l~~L 201 (202)
.|.++++|+.+++.+|.+. ..-+..|..+++|+.+++.. .++..-...|.++++|
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L 325 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKV 325 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSC
T ss_pred HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCc
Confidence 4455555666666555443 11123455556666666652 3442223445555544
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.24 E-value=0.00073 Score=46.66 Aligned_cols=56 Identities=14% Similarity=0.109 Sum_probs=38.2
Q ss_pred EEEcCCCCCc-cccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCc
Q 035702 83 ELNLSSQRIG-GILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFS 140 (202)
Q Consensus 83 ~L~l~~~~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~ 140 (202)
.++.++++++ ..+|..+. ++|++|+|++|.++..-+..|..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5677777776 23554432 45788888888888444455677788888888887664
No 156
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.20 E-value=0.00076 Score=46.57 Aligned_cols=57 Identities=19% Similarity=0.341 Sum_probs=44.1
Q ss_pred cEEEccCCcCc-ccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCc
Q 035702 106 RYINLADNGFH-GEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLE 164 (202)
Q Consensus 106 ~~L~l~~n~l~-~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~ 164 (202)
..++-+++.++ ..+|..+. ++|++|+|++|.++..-+..+..+++|++|+|.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36788888886 46675443 57999999999999433456788999999999999874
No 157
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.05 E-value=0.00025 Score=52.64 Aligned_cols=110 Identities=15% Similarity=0.178 Sum_probs=77.5
Q ss_pred CcEEEEEcCCC-CCccc----cCccccCCCCCcEEEccCCcCcccC----chhccCCCCCCeEeCCCCcCccC----cCh
Q 035702 79 QRVTELNLSSQ-RIGGI----LSPYVGNLSFLRYINLADNGFHGEI----PQEIGNLLRLEKLALPNNSFSGT----IPT 145 (202)
Q Consensus 79 ~~v~~L~l~~~-~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~----p~~~~~l~~L~~L~ls~n~l~~~----~p~ 145 (202)
..+++|+|+++ .+... +-+.+..-+.|+.|+|++|.+...- ...+..-+.|+.|+|+.|.++.. +-+
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 57899999985 76532 3345666788999999999997432 23344558899999999999853 234
Q ss_pred hccCCCCCcEEEeecc---cCcc----cCChhccCCCCCceeeccccccc
Q 035702 146 NLSRCSNLIYFHVGNN---KLEG----QIPKEIGSLLKLQTLALYYNYLT 188 (202)
Q Consensus 146 ~l~~l~~L~~L~l~~n---~~~g----~~p~~~~~l~~L~~L~l~~N~l~ 188 (202)
.+..-+.|++|+|++| .+.. .+.+.+..-+.|+.|+++.|...
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 4555678999999865 3332 13344556678999999877653
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.87 E-value=0.007 Score=48.83 Aligned_cols=85 Identities=15% Similarity=0.128 Sum_probs=49.2
Q ss_pred ccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccC-ChhccCCC
Q 035702 97 PYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQI-PKEIGSLL 175 (202)
Q Consensus 97 ~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~-p~~~~~l~ 175 (202)
..+.....|+.+.+..+ +...-...|.++++|+.+.+.++.++..-...|.++.+|+.+.+..+ ++ .+ ...|.++.
T Consensus 257 ~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~ 333 (379)
T 4h09_A 257 FLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCK 333 (379)
T ss_dssp TTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCT
T ss_pred cccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCC
Confidence 34455556666666443 33222345666777777777766666323355677777777777544 43 23 23566677
Q ss_pred CCceeeccc
Q 035702 176 KLQTLALYY 184 (202)
Q Consensus 176 ~L~~L~l~~ 184 (202)
+|+.+.+..
T Consensus 334 ~L~~i~ip~ 342 (379)
T 4h09_A 334 ALSTISYPK 342 (379)
T ss_dssp TCCCCCCCT
T ss_pred CCCEEEECC
Confidence 777776644
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.84 E-value=0.0027 Score=51.74 Aligned_cols=100 Identities=14% Similarity=0.085 Sum_probs=67.8
Q ss_pred cccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCCC
Q 035702 98 YVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKL 177 (202)
Q Consensus 98 ~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L 177 (202)
.+..+.+|+.+.+.++ ++..-...|.++.+|+.+++..+ ++..-...|.++.+|+.+++..+ ++..-...|.++.+|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 3556677777777654 44233456778888999888754 55233467888899999988766 552223568888899
Q ss_pred ceeeccccccccccChhccCCCCCC
Q 035702 178 QTLALYYNYLTRQLPDFIGNLSALE 202 (202)
Q Consensus 178 ~~L~l~~N~l~g~iP~~~~~l~~L~ 202 (202)
+.+++..+ ++ .+...|.++++|+
T Consensus 369 ~~i~lp~~-~~-~~~~~F~~c~~L~ 391 (394)
T 4fs7_A 369 KKVELPKR-LE-QYRYDFEDTTKFK 391 (394)
T ss_dssp CEEEEEGG-GG-GGGGGBCTTCEEE
T ss_pred CEEEECCC-CE-EhhheecCCCCCc
Confidence 99988765 33 3455677777653
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.76 E-value=0.012 Score=47.96 Aligned_cols=86 Identities=12% Similarity=0.208 Sum_probs=56.1
Q ss_pred cccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCC-hhccCCCC
Q 035702 98 YVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIP-KEIGSLLK 176 (202)
Q Consensus 98 ~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p-~~~~~l~~ 176 (202)
.|..++.|+.+.+.. .++..-...|.++.+|+.+++..+ ++..-...|.++.+|+.+.+..+ ++ .+. ..|.++.+
T Consensus 283 aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~ 358 (394)
T 4gt6_A 283 AFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTA 358 (394)
T ss_dssp TTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTT
T ss_pred ccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCC
Confidence 455666777777753 344233446777788888888754 44233456778888888888654 54 343 46778888
Q ss_pred Cceeecccccc
Q 035702 177 LQTLALYYNYL 187 (202)
Q Consensus 177 L~~L~l~~N~l 187 (202)
|+.+++.+|..
T Consensus 359 L~~i~~~~~~~ 369 (394)
T 4gt6_A 359 LNNIEYSGSRS 369 (394)
T ss_dssp CCEEEESSCHH
T ss_pred CCEEEECCcee
Confidence 88888877654
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.73 E-value=0.013 Score=47.22 Aligned_cols=103 Identities=20% Similarity=0.118 Sum_probs=69.9
Q ss_pred ccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCC
Q 035702 97 PYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLK 176 (202)
Q Consensus 97 ~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~ 176 (202)
..+.....|+.+.+..+ ++..-...+.+..+|+.+.+..+ ++..-...+.++++|+.+.+.++.++..-...|.++.+
T Consensus 234 ~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~ 311 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK 311 (379)
T ss_dssp TTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred ccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCC
Confidence 34566677777777665 44233456677788888888654 44233356788999999999988887333457888999
Q ss_pred CceeeccccccccccChhccCCCCCC
Q 035702 177 LQTLALYYNYLTRQLPDFIGNLSALE 202 (202)
Q Consensus 177 L~~L~l~~N~l~g~iP~~~~~l~~L~ 202 (202)
|+.+.+..+ ++..-...|.++++|+
T Consensus 312 L~~i~lp~~-l~~I~~~aF~~C~~L~ 336 (379)
T 4h09_A 312 LSSVTLPTA-LKTIQVYAFKNCKALS 336 (379)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred CCEEEcCcc-ccEEHHHHhhCCCCCC
Confidence 999999754 5522235677777664
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.66 E-value=0.0012 Score=49.03 Aligned_cols=88 Identities=15% Similarity=0.151 Sum_probs=64.8
Q ss_pred cccCCCCCcEEEccCC-cCccc----CchhccCCCCCCeEeCCCCcCccC----cChhccCCCCCcEEEeecccCccc--
Q 035702 98 YVGNLSFLRYINLADN-GFHGE----IPQEIGNLLRLEKLALPNNSFSGT----IPTNLSRCSNLIYFHVGNNKLEGQ-- 166 (202)
Q Consensus 98 ~l~~l~~L~~L~l~~n-~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~----~p~~l~~l~~L~~L~l~~n~~~g~-- 166 (202)
.+..-+.|++|++++| .+... +-..+..-+.|+.|+|++|.+... +-+.+..-+.|++|+|+.|.|...
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3455678999999986 77532 334566678999999999999853 334445568999999999999743
Q ss_pred --CChhccCCCCCceeecccc
Q 035702 167 --IPKEIGSLLKLQTLALYYN 185 (202)
Q Consensus 167 --~p~~~~~l~~L~~L~l~~N 185 (202)
+-+.+..-..|+.|+|++|
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHhhCCceeEEECCCC
Confidence 2334556667999999865
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.46 E-value=0.02 Score=46.52 Aligned_cols=101 Identities=12% Similarity=0.191 Sum_probs=73.2
Q ss_pred ccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecccCcccCChhccCCCC
Q 035702 97 PYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLK 176 (202)
Q Consensus 97 ~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~ 176 (202)
..|..+..|+.+.+.++..+ .-...|.++++|+.+.+.. .++..-...|.++.+|+.+++..+ ++..-...|.++.+
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 35677788999988776544 4455678889999999974 455233366889999999999765 54222356889999
Q ss_pred Cceeecccccccccc-ChhccCCCCCC
Q 035702 177 LQTLALYYNYLTRQL-PDFIGNLSALE 202 (202)
Q Consensus 177 L~~L~l~~N~l~g~i-P~~~~~l~~L~ 202 (202)
|+.+.+..+ ++ .| ...|.++++|+
T Consensus 336 L~~i~ip~s-v~-~I~~~aF~~C~~L~ 360 (394)
T 4gt6_A 336 LERIAIPSS-VT-KIPESAFSNCTALN 360 (394)
T ss_dssp CCEEEECTT-CC-BCCGGGGTTCTTCC
T ss_pred CCEEEECcc-cC-EEhHhHhhCCCCCC
Confidence 999999654 65 44 46788888875
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.29 E-value=0.03 Score=45.45 Aligned_cols=104 Identities=20% Similarity=0.165 Sum_probs=61.5
Q ss_pred CcEEEEEcCCCCCccccCccccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCCCCcC-------------------
Q 035702 79 QRVTELNLSSQRIGGILSPYVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALPNNSF------------------- 139 (202)
Q Consensus 79 ~~v~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l------------------- 139 (202)
..++++.+.. .++..-...|..+++|+.+++.++ ++..-...|.++.+|+.+.+..+--
T Consensus 71 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~ 148 (394)
T 4fs7_A 71 RKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPE 148 (394)
T ss_dssp TTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCT
T ss_pred CCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccccCc
Confidence 4688888864 466544566888899999998765 4423334566666666655543210
Q ss_pred --ccCcChhccCCCCCcEEEeecccCcccCChhccCCCCCceeecccc
Q 035702 140 --SGTIPTNLSRCSNLIYFHVGNNKLEGQIPKEIGSLLKLQTLALYYN 185 (202)
Q Consensus 140 --~~~~p~~l~~l~~L~~L~l~~n~~~g~~p~~~~~l~~L~~L~l~~N 185 (202)
...-...+.++++|+.+.+.++..+ .-...+.++.+|+.+++..|
T Consensus 149 ~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 149 GVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN 195 (394)
T ss_dssp TCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT
T ss_pred cccccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC
Confidence 0011234667777888887655332 22235666777777777654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=42.90 E-value=48 Score=20.96 Aligned_cols=37 Identities=22% Similarity=0.116 Sum_probs=16.4
Q ss_pred cccCCCCCcEEEccCCcCcccCchhccCCCCCCeEeCC
Q 035702 98 YVGNLSFLRYINLADNGFHGEIPQEIGNLLRLEKLALP 135 (202)
Q Consensus 98 ~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls 135 (202)
.|..++.|+.+.+..+- +..-...|.++.+|+.+.+.
T Consensus 15 aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 15 LFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp TTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEEC
T ss_pred HhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEc
Confidence 34455555555554431 21223344445555555444
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=39.92 E-value=69 Score=20.17 Aligned_cols=47 Identities=11% Similarity=0.073 Sum_probs=33.7
Q ss_pred cCcccCchhccCCCCCCeEeCCCCcCccCcChhccCCCCCcEEEeecc
Q 035702 114 GFHGEIPQEIGNLLRLEKLALPNNSFSGTIPTNLSRCSNLIYFHVGNN 161 (202)
Q Consensus 114 ~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n 161 (202)
.++..-...|.++.+|+.+.+..+ ++..-...|.++.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 444344567888899999988875 34244567889999999988764
No 167
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=37.10 E-value=8.1 Score=17.02 Aligned_cols=9 Identities=33% Similarity=1.143 Sum_probs=6.9
Q ss_pred CCCccccce
Q 035702 65 NLCLWTGVT 73 (202)
Q Consensus 65 ~~c~w~gv~ 73 (202)
..|+|+|..
T Consensus 6 gacswrgle 14 (23)
T 3ox7_P 6 GACSWRGLE 14 (26)
T ss_pred cccccccch
Confidence 469999874
Done!