Query 035703
Match_columns 139
No_of_seqs 157 out of 1568
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 05:32:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035703.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035703hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.8 1.1E-20 2.3E-25 144.6 7.2 70 64-134 216-287 (348)
2 PF13639 zf-RING_2: Ring finge 99.7 1.2E-18 2.6E-23 96.9 1.9 44 77-121 1-44 (44)
3 COG5243 HRD1 HRD ubiquitin lig 99.6 1.1E-15 2.3E-20 116.9 4.9 56 69-125 280-345 (491)
4 PF12678 zf-rbx1: RING-H2 zinc 99.6 3.7E-15 8E-20 91.3 3.9 45 76-121 19-73 (73)
5 PHA02929 N1R/p28-like protein; 99.5 2.2E-14 4.8E-19 105.5 4.6 52 74-125 172-227 (238)
6 COG5540 RING-finger-containing 99.5 1.7E-14 3.7E-19 107.8 3.9 52 75-127 322-374 (374)
7 KOG0317 Predicted E3 ubiquitin 99.5 6.2E-14 1.3E-18 104.2 5.2 49 75-127 238-286 (293)
8 PLN03208 E3 ubiquitin-protein 99.4 8.3E-13 1.8E-17 93.9 4.9 57 73-135 15-87 (193)
9 PF13920 zf-C3HC4_3: Zinc fing 99.4 7.2E-13 1.6E-17 75.4 3.6 46 76-125 2-48 (50)
10 cd00162 RING RING-finger (Real 99.3 3.3E-12 7.1E-17 70.1 3.8 44 78-124 1-45 (45)
11 PF12861 zf-Apc11: Anaphase-pr 99.3 2.7E-12 5.9E-17 79.8 3.5 51 75-125 20-82 (85)
12 PF13923 zf-C3HC4_2: Zinc fing 99.3 2.8E-12 6.1E-17 69.2 3.1 39 79-120 1-39 (39)
13 KOG0823 Predicted E3 ubiquitin 99.3 3.3E-12 7.1E-17 92.5 4.2 58 73-136 44-104 (230)
14 PHA02926 zinc finger-like prot 99.2 6.5E-12 1.4E-16 90.6 3.8 61 73-137 167-238 (242)
15 KOG0802 E3 ubiquitin ligase [P 99.2 6.6E-12 1.4E-16 102.8 3.3 53 72-125 287-341 (543)
16 KOG1734 Predicted RING-contain 99.2 4.2E-11 9.1E-16 88.5 5.0 52 73-125 221-281 (328)
17 PF14634 zf-RING_5: zinc-RING 99.2 3.5E-11 7.6E-16 66.6 3.5 44 78-122 1-44 (44)
18 KOG0320 Predicted E3 ubiquitin 99.1 4.3E-11 9.3E-16 83.5 3.8 51 75-127 130-180 (187)
19 PF15227 zf-C3HC4_4: zinc fing 99.1 8.1E-11 1.8E-15 64.5 3.3 38 79-120 1-42 (42)
20 PF00097 zf-C3HC4: Zinc finger 99.1 6.5E-11 1.4E-15 64.4 2.4 39 79-120 1-41 (41)
21 KOG0828 Predicted E3 ubiquitin 99.1 3E-10 6.5E-15 90.0 6.3 51 75-126 570-635 (636)
22 smart00184 RING Ring finger. E 99.0 2.1E-10 4.5E-15 60.7 3.4 38 79-120 1-39 (39)
23 smart00504 Ubox Modified RING 99.0 3.3E-10 7.2E-15 67.0 4.0 51 77-133 2-52 (63)
24 COG5194 APC11 Component of SCF 98.9 1.4E-09 3E-14 66.3 3.2 29 97-125 53-81 (88)
25 TIGR00599 rad18 DNA repair pro 98.9 1.4E-09 3.1E-14 85.5 3.9 50 73-126 23-72 (397)
26 COG5574 PEX10 RING-finger-cont 98.9 1.2E-09 2.6E-14 80.6 2.5 49 75-127 214-264 (271)
27 KOG1493 Anaphase-promoting com 98.8 7.7E-10 1.7E-14 66.9 -0.4 51 75-125 19-81 (84)
28 smart00744 RINGv The RING-vari 98.8 8.3E-09 1.8E-13 58.3 3.3 42 78-121 1-49 (49)
29 PF13445 zf-RING_UBOX: RING-ty 98.7 1.5E-08 3.3E-13 55.6 2.9 34 79-114 1-35 (43)
30 KOG2164 Predicted E3 ubiquitin 98.6 2.1E-08 4.6E-13 80.0 2.5 47 76-126 186-237 (513)
31 PF11793 FANCL_C: FANCL C-term 98.6 5.6E-09 1.2E-13 63.4 -0.6 50 76-125 2-66 (70)
32 KOG2930 SCF ubiquitin ligase, 98.6 3.5E-08 7.6E-13 63.0 2.4 50 75-124 45-107 (114)
33 PF04564 U-box: U-box domain; 98.6 5.2E-08 1.1E-12 59.6 2.8 53 75-133 3-56 (73)
34 KOG0804 Cytoplasmic Zn-finger 98.5 3E-08 6.5E-13 78.0 1.6 48 75-125 174-222 (493)
35 TIGR00570 cdk7 CDK-activating 98.5 8.4E-08 1.8E-12 73.0 3.9 52 75-127 2-56 (309)
36 KOG4265 Predicted E3 ubiquitin 98.5 1.2E-07 2.6E-12 72.9 3.3 53 74-130 288-341 (349)
37 KOG0287 Postreplication repair 98.4 6.6E-08 1.4E-12 73.9 1.5 47 75-125 22-68 (442)
38 KOG0827 Predicted E3 ubiquitin 98.4 1E-07 2.2E-12 74.0 2.0 47 77-123 5-54 (465)
39 KOG3970 Predicted E3 ubiquitin 98.4 1.9E-07 4.1E-12 67.8 2.2 61 75-137 49-117 (299)
40 KOG2177 Predicted E3 ubiquitin 98.3 2E-07 4.4E-12 69.6 1.9 45 74-122 11-55 (386)
41 KOG4172 Predicted E3 ubiquitin 98.3 1E-07 2.2E-12 54.1 -0.1 45 77-125 8-54 (62)
42 COG5432 RAD18 RING-finger-cont 98.3 4E-07 8.7E-12 68.4 2.6 47 75-125 24-70 (391)
43 COG5219 Uncharacterized conser 98.3 3.3E-07 7.2E-12 77.9 1.5 53 73-125 1466-1523(1525)
44 KOG0825 PHD Zn-finger protein 98.2 3.3E-07 7.1E-12 76.6 -0.2 49 76-125 123-171 (1134)
45 KOG1645 RING-finger-containing 98.2 1.5E-06 3.2E-11 68.0 3.3 51 75-125 3-56 (463)
46 PF14835 zf-RING_6: zf-RING of 98.2 3.7E-07 8E-12 53.8 -0.2 45 76-125 7-51 (65)
47 KOG1039 Predicted E3 ubiquitin 98.1 2.2E-06 4.9E-11 66.4 2.4 51 75-125 160-221 (344)
48 KOG0978 E3 ubiquitin ligase in 98.0 2.3E-06 5E-11 71.3 1.6 53 75-133 642-695 (698)
49 KOG0311 Predicted E3 ubiquitin 97.9 9.7E-07 2.1E-11 67.8 -1.9 48 75-125 42-90 (381)
50 KOG4445 Uncharacterized conser 97.9 4.1E-06 8.9E-11 63.3 1.2 50 75-125 114-186 (368)
51 KOG1941 Acetylcholine receptor 97.9 4.5E-06 9.8E-11 65.1 1.4 61 75-136 364-431 (518)
52 KOG0824 Predicted E3 ubiquitin 97.9 7.5E-06 1.6E-10 61.8 2.1 49 75-127 6-55 (324)
53 PF11789 zf-Nse: Zinc-finger o 97.8 1.2E-05 2.5E-10 46.8 1.9 42 75-119 10-53 (57)
54 KOG1785 Tyrosine kinase negati 97.7 1E-05 2.2E-10 63.4 1.2 45 77-125 370-416 (563)
55 KOG2879 Predicted E3 ubiquitin 97.7 0.00018 3.9E-09 53.9 7.5 56 67-125 230-287 (298)
56 KOG1428 Inhibitor of type V ad 97.7 2.4E-05 5.2E-10 69.5 2.9 53 72-125 3482-3544(3738)
57 KOG0297 TNF receptor-associate 97.6 4.7E-05 1E-09 60.4 2.6 52 73-127 18-69 (391)
58 PF05883 Baculo_RING: Baculovi 97.5 3.9E-05 8.5E-10 51.7 1.2 36 75-111 25-66 (134)
59 KOG4159 Predicted E3 ubiquitin 97.5 6E-05 1.3E-09 59.7 2.2 49 74-126 82-130 (398)
60 KOG1814 Predicted E3 ubiquitin 97.4 0.00011 2.5E-09 57.7 2.4 51 75-126 183-241 (445)
61 PF12906 RINGv: RING-variant d 97.3 0.00014 3E-09 40.5 1.7 40 79-120 1-47 (47)
62 PF14570 zf-RING_4: RING/Ubox 97.2 0.00033 7.1E-09 39.1 2.7 44 79-123 1-46 (48)
63 KOG1952 Transcription factor N 97.2 0.00011 2.4E-09 62.2 1.0 47 75-121 190-243 (950)
64 PHA02862 5L protein; Provision 97.1 0.0005 1.1E-08 46.9 3.1 45 76-125 2-53 (156)
65 KOG3039 Uncharacterized conser 97.1 0.00057 1.2E-08 50.6 3.3 57 75-133 220-276 (303)
66 PF10367 Vps39_2: Vacuolar sor 97.0 0.00033 7.1E-09 45.3 1.4 33 74-108 76-108 (109)
67 PHA02825 LAP/PHD finger-like p 97.0 0.00099 2.2E-08 46.2 3.8 48 74-125 6-59 (162)
68 KOG0801 Predicted E3 ubiquitin 96.9 0.00024 5.2E-09 49.4 0.3 30 74-104 175-204 (205)
69 KOG1002 Nucleotide excision re 96.9 0.00045 9.8E-09 56.2 1.9 50 75-128 535-589 (791)
70 KOG0826 Predicted E3 ubiquitin 96.9 0.0055 1.2E-07 47.1 7.4 51 71-124 295-345 (357)
71 COG5152 Uncharacterized conser 96.8 0.00045 9.8E-09 49.6 1.1 45 76-124 196-240 (259)
72 KOG4692 Predicted E3 ubiquitin 96.8 0.00076 1.6E-08 52.4 2.4 48 74-125 420-467 (489)
73 PHA03096 p28-like protein; Pro 96.8 0.00064 1.4E-08 51.7 1.9 46 77-122 179-231 (284)
74 KOG2660 Locus-specific chromos 96.7 0.00041 8.9E-09 53.2 0.2 52 72-126 11-62 (331)
75 PF04641 Rtf2: Rtf2 RING-finge 96.7 0.002 4.4E-08 48.4 3.9 59 73-134 110-168 (260)
76 PF14447 Prok-RING_4: Prokaryo 96.7 0.00083 1.8E-08 38.4 1.2 43 78-126 9-51 (55)
77 KOG0827 Predicted E3 ubiquitin 96.6 8.2E-05 1.8E-09 58.1 -4.4 50 75-125 195-245 (465)
78 KOG4739 Uncharacterized protei 96.6 0.00079 1.7E-08 49.6 0.9 44 78-125 5-48 (233)
79 KOG2817 Predicted E3 ubiquitin 96.6 0.015 3.3E-07 45.8 7.7 54 75-131 333-389 (394)
80 KOG1571 Predicted E3 ubiquitin 96.5 0.0015 3.2E-08 50.7 2.2 45 74-125 303-347 (355)
81 KOG1940 Zn-finger protein [Gen 96.3 0.0021 4.7E-08 48.6 2.0 44 78-122 160-204 (276)
82 KOG4275 Predicted E3 ubiquitin 96.3 0.00056 1.2E-08 51.8 -1.3 42 76-125 300-342 (350)
83 PF08746 zf-RING-like: RING-li 96.3 0.0026 5.7E-08 34.7 1.6 41 79-120 1-43 (43)
84 KOG1813 Predicted E3 ubiquitin 96.3 0.0018 3.8E-08 49.1 1.0 46 76-125 241-286 (313)
85 PF14446 Prok-RING_1: Prokaryo 96.2 0.0076 1.7E-07 34.4 3.3 35 75-109 4-38 (54)
86 PF03854 zf-P11: P-11 zinc fin 96.1 0.0029 6.2E-08 35.0 1.3 31 98-128 18-49 (50)
87 KOG3268 Predicted E3 ubiquitin 96.1 0.0042 9.1E-08 44.0 2.4 29 97-125 189-228 (234)
88 KOG2114 Vacuolar assembly/sort 95.8 0.0048 1E-07 52.7 1.9 44 75-124 839-882 (933)
89 KOG4185 Predicted E3 ubiquitin 95.8 0.0077 1.7E-07 45.9 2.8 47 77-124 4-54 (296)
90 COG5222 Uncharacterized conser 95.8 0.0082 1.8E-07 45.8 2.8 43 77-122 275-318 (427)
91 COG5236 Uncharacterized conser 95.5 0.024 5.3E-07 44.2 4.5 47 75-125 60-108 (493)
92 KOG0309 Conserved WD40 repeat- 95.5 0.0086 1.9E-07 50.8 2.0 39 79-119 1031-1069(1081)
93 PF07800 DUF1644: Protein of u 95.4 0.022 4.8E-07 39.6 3.5 37 75-111 1-46 (162)
94 PF10272 Tmpp129: Putative tra 95.0 0.037 8E-07 43.5 4.2 54 72-125 267-351 (358)
95 KOG2034 Vacuolar sorting prote 94.9 0.014 3E-07 50.2 1.6 35 75-111 816-850 (911)
96 KOG3053 Uncharacterized conser 94.7 0.021 4.6E-07 42.7 2.0 54 71-125 15-82 (293)
97 COG5175 MOT2 Transcriptional r 94.3 0.036 7.7E-07 43.1 2.6 50 75-125 13-64 (480)
98 KOG1001 Helicase-like transcri 94.0 0.022 4.7E-07 48.4 0.9 44 77-125 455-500 (674)
99 KOG0298 DEAD box-containing he 93.8 0.019 4.1E-07 51.2 0.3 47 75-124 1152-1198(1394)
100 KOG1609 Protein involved in mR 93.8 0.063 1.4E-06 40.9 3.0 50 75-125 77-134 (323)
101 KOG3161 Predicted E3 ubiquitin 93.7 0.024 5.1E-07 47.5 0.6 46 75-123 10-55 (861)
102 KOG1100 Predicted E3 ubiquitin 93.6 0.032 7E-07 40.7 1.2 39 79-125 161-200 (207)
103 PF05393 Hum_adeno_E3A: Human 93.6 0.1 2.3E-06 32.6 3.2 25 17-41 26-50 (94)
104 KOG2932 E3 ubiquitin ligase in 93.5 0.03 6.6E-07 43.0 0.8 45 76-125 90-134 (389)
105 KOG1829 Uncharacterized conser 93.2 0.031 6.8E-07 46.4 0.5 45 74-122 509-558 (580)
106 KOG3002 Zn finger protein [Gen 92.8 0.094 2E-06 40.4 2.7 43 75-125 47-91 (299)
107 COG5183 SSM4 Protein involved 92.7 0.12 2.7E-06 44.5 3.4 49 75-125 11-66 (1175)
108 KOG1812 Predicted E3 ubiquitin 92.6 0.051 1.1E-06 43.2 1.0 38 75-113 145-183 (384)
109 PF05568 ASFV_J13L: African sw 92.5 0.4 8.8E-06 33.0 5.1 34 21-54 27-60 (189)
110 KOG3800 Predicted E3 ubiquitin 91.9 0.16 3.5E-06 38.6 2.8 47 78-125 2-51 (300)
111 PF13901 DUF4206: Domain of un 91.7 0.16 3.4E-06 36.9 2.5 42 75-122 151-197 (202)
112 KOG3899 Uncharacterized conser 91.6 0.1 2.2E-06 39.9 1.5 28 98-125 325-365 (381)
113 PF02891 zf-MIZ: MIZ/SP-RING z 91.0 0.28 6.1E-06 27.5 2.6 42 78-123 4-50 (50)
114 PF15102 TMEM154: TMEM154 prot 90.8 0.2 4.3E-06 34.5 2.2 11 102-112 125-135 (146)
115 COG5220 TFB3 Cdk activating ki 90.8 0.11 2.3E-06 38.7 0.9 48 75-122 9-61 (314)
116 COG5109 Uncharacterized conser 90.5 1.1 2.4E-05 34.8 6.1 45 75-120 335-382 (396)
117 PF01102 Glycophorin_A: Glycop 90.0 0.65 1.4E-05 31.1 4.0 28 25-52 66-94 (122)
118 PF12273 RCR: Chitin synthesis 89.0 0.41 8.8E-06 32.2 2.6 16 36-51 14-29 (130)
119 KOG0269 WD40 repeat-containing 88.7 0.44 9.5E-06 40.8 3.0 41 77-119 780-820 (839)
120 KOG3113 Uncharacterized conser 88.4 0.44 9.5E-06 35.7 2.6 49 75-125 110-158 (293)
121 PF05290 Baculo_IE-1: Baculovi 87.8 0.53 1.1E-05 31.9 2.4 52 75-126 79-133 (140)
122 smart00249 PHD PHD zinc finger 87.5 0.5 1.1E-05 24.9 1.9 31 78-109 1-31 (47)
123 TIGR01478 STEVOR variant surfa 87.2 0.47 1E-05 36.2 2.2 30 15-46 252-281 (295)
124 KOG0802 E3 ubiquitin ligase [P 87.1 0.39 8.5E-06 39.9 1.9 44 74-125 477-520 (543)
125 KOG1815 Predicted E3 ubiquitin 86.8 0.47 1E-05 38.4 2.2 39 72-113 66-104 (444)
126 PTZ00370 STEVOR; Provisional 86.6 0.48 1.1E-05 36.1 2.0 19 15-33 248-266 (296)
127 smart00132 LIM Zinc-binding do 85.7 0.53 1.1E-05 23.9 1.3 37 79-125 2-38 (39)
128 KOG2066 Vacuolar assembly/sort 85.5 0.3 6.6E-06 41.9 0.5 44 75-120 783-830 (846)
129 KOG4367 Predicted Zn-finger pr 85.4 0.43 9.3E-06 38.6 1.3 33 75-111 3-35 (699)
130 PF00628 PHD: PHD-finger; Int 85.2 0.41 8.9E-06 26.4 0.8 43 78-121 1-49 (51)
131 KOG4362 Transcriptional regula 84.9 0.22 4.8E-06 42.2 -0.6 47 75-125 20-69 (684)
132 PF02439 Adeno_E3_CR2: Adenovi 84.7 3 6.5E-05 22.0 3.8 16 37-52 19-34 (38)
133 PF02009 Rifin_STEVOR: Rifin/s 84.5 1.6 3.5E-05 33.7 4.0 30 22-51 254-283 (299)
134 KOG3005 GIY-YIG type nuclease 84.2 0.65 1.4E-05 35.1 1.7 49 77-125 183-243 (276)
135 KOG0825 PHD Zn-finger protein 84.1 1 2.2E-05 39.1 2.9 51 75-125 95-154 (1134)
136 PF15050 SCIMP: SCIMP protein 84.0 1.9 4E-05 28.7 3.5 8 20-27 8-15 (133)
137 PF04277 OAD_gamma: Oxaloaceta 83.3 6.1 0.00013 23.8 5.6 13 24-36 10-22 (79)
138 PF13908 Shisa: Wnt and FGF in 83.2 0.77 1.7E-05 32.4 1.7 21 17-37 73-93 (179)
139 PF10571 UPF0547: Uncharacteri 83.2 0.73 1.6E-05 22.2 1.1 23 78-102 2-24 (26)
140 KOG4718 Non-SMC (structural ma 82.3 0.78 1.7E-05 33.5 1.4 44 75-121 180-223 (235)
141 KOG3842 Adaptor protein Pellin 80.3 2.1 4.6E-05 33.3 3.2 50 75-125 340-414 (429)
142 PF07975 C1_4: TFIIH C1-like d 79.4 1.8 3.8E-05 24.4 1.9 42 79-121 2-50 (51)
143 PF06667 PspB: Phage shock pro 79.2 5.1 0.00011 24.5 4.0 27 23-49 4-30 (75)
144 KOG1812 Predicted E3 ubiquitin 78.4 1 2.2E-05 35.9 1.1 45 75-120 305-351 (384)
145 PF01102 Glycophorin_A: Glycop 78.4 7.5 0.00016 26.0 5.0 37 19-55 64-100 (122)
146 PF13719 zinc_ribbon_5: zinc-r 78.2 1.5 3.2E-05 22.8 1.3 26 78-103 4-36 (37)
147 PF08693 SKG6: Transmembrane a 78.2 0.15 3.3E-06 27.2 -2.5 10 39-48 28-37 (40)
148 PF00412 LIM: LIM domain; Int 77.2 1.9 4.1E-05 24.1 1.7 39 79-127 1-39 (58)
149 PF02060 ISK_Channel: Slow vol 75.5 12 0.00027 25.1 5.3 24 26-49 47-70 (129)
150 PRK09458 pspB phage shock prot 75.2 5 0.00011 24.5 3.2 27 24-50 5-31 (75)
151 PF09125 COX2-transmemb: Cytoc 75.1 7.4 0.00016 20.3 3.3 18 20-37 15-32 (38)
152 PF12768 Rax2: Cortical protei 74.7 3.8 8.2E-05 31.3 3.2 31 21-51 229-259 (281)
153 KOG3653 Transforming growth fa 74.6 20 0.00043 29.7 7.3 6 106-111 294-299 (534)
154 PF01708 Gemini_mov: Geminivir 74.6 3 6.4E-05 26.3 2.1 11 13-23 25-35 (91)
155 PF06024 DUF912: Nucleopolyhed 74.4 2 4.4E-05 27.6 1.4 23 27-49 66-88 (101)
156 PRK13415 flagella biosynthesis 74.3 12 0.00027 27.5 5.6 30 13-42 56-85 (219)
157 PF14569 zf-UDP: Zinc-binding 74.1 6.1 0.00013 24.3 3.4 51 75-125 8-62 (80)
158 PF01363 FYVE: FYVE zinc finge 73.3 1.6 3.4E-05 25.7 0.7 36 75-110 8-43 (69)
159 PF06937 EURL: EURL protein; 72.5 4 8.7E-05 31.0 2.8 17 102-118 57-74 (285)
160 KOG0824 Predicted E3 ubiquitin 72.1 1.5 3.3E-05 33.7 0.5 53 73-128 102-154 (324)
161 PF07191 zinc-ribbons_6: zinc- 71.9 1.3 2.7E-05 26.7 0.0 40 77-125 2-41 (70)
162 PF11023 DUF2614: Protein of u 71.6 26 0.00056 23.1 6.6 14 112-125 83-96 (114)
163 PF02480 Herpes_gE: Alphaherpe 71.5 1.3 2.8E-05 36.0 0.0 13 34-46 363-375 (439)
164 TIGR01477 RIFIN variant surfac 71.3 7.7 0.00017 30.6 4.2 28 25-52 311-338 (353)
165 PTZ00046 rifin; Provisional 71.2 7.7 0.00017 30.7 4.2 28 25-52 316-343 (358)
166 PF04710 Pellino: Pellino; In 71.1 1.3 2.9E-05 35.3 0.0 26 94-123 306-337 (416)
167 PF07649 C1_3: C1-like domain; 71.1 3.7 7.9E-05 20.1 1.6 29 78-107 2-30 (30)
168 PF06305 DUF1049: Protein of u 70.5 9.3 0.0002 22.2 3.6 11 22-32 20-30 (68)
169 KOG3039 Uncharacterized conser 70.3 3.5 7.6E-05 31.0 2.1 34 74-111 41-74 (303)
170 PF02009 Rifin_STEVOR: Rifin/s 70.3 7.7 0.00017 30.0 4.0 33 18-50 254-286 (299)
171 KOG2807 RNA polymerase II tran 69.1 6.1 0.00013 30.9 3.1 50 73-123 327-376 (378)
172 PF14979 TMEM52: Transmembrane 69.0 12 0.00025 25.9 4.2 37 16-52 15-51 (154)
173 PHA02650 hypothetical protein; 68.9 15 0.00032 22.6 4.2 26 21-46 46-71 (81)
174 TIGR02976 phageshock_pspB phag 68.7 13 0.00028 22.6 4.0 18 32-49 13-30 (75)
175 PF07213 DAP10: DAP10 membrane 68.6 14 0.0003 22.8 4.0 40 16-55 27-66 (79)
176 KOG2068 MOT2 transcription fac 68.5 5.6 0.00012 31.0 2.9 48 77-125 250-298 (327)
177 PF13717 zinc_ribbon_4: zinc-r 68.3 2.8 6.2E-05 21.6 0.9 25 78-103 4-36 (36)
178 PF06844 DUF1244: Protein of u 68.1 3.6 7.7E-05 24.4 1.4 11 102-112 12-22 (68)
179 PF15050 SCIMP: SCIMP protein 68.0 13 0.00029 24.8 4.2 26 24-49 8-33 (133)
180 cd00065 FYVE FYVE domain; Zinc 67.7 5.1 0.00011 22.4 2.0 35 77-111 3-37 (57)
181 PF06365 CD34_antigen: CD34/Po 67.2 7.7 0.00017 28.3 3.2 18 32-49 111-128 (202)
182 PF01034 Syndecan: Syndecan do 67.2 1.7 3.6E-05 25.7 -0.1 22 23-44 13-34 (64)
183 PF04995 CcmD: Heme exporter p 66.5 17 0.00036 19.8 3.8 12 19-30 6-17 (46)
184 TIGR00622 ssl1 transcription f 66.4 9.4 0.0002 25.2 3.2 46 76-121 55-110 (112)
185 cd00350 rubredoxin_like Rubred 66.1 3.5 7.5E-05 20.8 0.9 20 98-123 7-26 (33)
186 PHA02849 putative transmembran 65.9 19 0.00041 22.1 4.2 28 19-46 11-38 (82)
187 PF06906 DUF1272: Protein of u 65.8 12 0.00026 21.5 3.2 45 78-126 7-53 (57)
188 PLN02189 cellulose synthase 65.2 8.7 0.00019 34.5 3.7 51 75-125 33-87 (1040)
189 PF04710 Pellino: Pellino; In 64.9 2.1 4.6E-05 34.2 0.0 50 75-125 327-401 (416)
190 PF04216 FdhE: Protein involve 64.7 1.4 3.1E-05 33.6 -1.0 44 76-125 172-222 (290)
191 PF10497 zf-4CXXC_R1: Zinc-fin 64.5 9.5 0.00021 24.7 3.0 24 99-122 37-69 (105)
192 PF04971 Lysis_S: Lysis protei 63.1 15 0.00033 21.9 3.4 21 32-52 42-62 (68)
193 smart00064 FYVE Protein presen 63.0 8.2 0.00018 22.4 2.3 36 76-111 10-45 (68)
194 PF15176 LRR19-TM: Leucine-ric 62.7 36 0.00079 21.9 5.3 24 19-42 14-37 (102)
195 PF10577 UPF0560: Uncharacteri 62.2 20 0.00044 31.3 5.3 29 26-54 276-305 (807)
196 PF08374 Protocadherin: Protoc 62.0 3.9 8.6E-05 30.0 0.9 25 22-46 37-61 (221)
197 PF03229 Alpha_GJ: Alphavirus 61.3 24 0.00052 23.4 4.4 13 24-36 84-96 (126)
198 PRK05978 hypothetical protein; 60.6 7.7 0.00017 26.8 2.1 36 95-135 36-73 (148)
199 PRK11486 flagellar biosynthesi 60.1 49 0.0011 22.2 5.8 17 34-50 27-43 (124)
200 PF14946 DUF4501: Domain of un 59.9 15 0.00033 25.8 3.5 30 16-45 83-114 (180)
201 PF15330 SIT: SHP2-interacting 59.6 35 0.00076 22.2 5.0 21 29-49 3-23 (107)
202 PHA02650 hypothetical protein; 59.5 38 0.00082 20.8 4.7 35 14-48 42-76 (81)
203 PLN02436 cellulose synthase A 59.4 13 0.00028 33.7 3.7 51 75-125 35-89 (1094)
204 PHA02844 putative transmembran 58.8 22 0.00048 21.6 3.6 22 24-45 48-69 (75)
205 KOG2979 Protein involved in DN 58.7 6.3 0.00014 29.7 1.6 42 77-121 177-220 (262)
206 PF09723 Zn-ribbon_8: Zinc rib 58.2 1.7 3.7E-05 23.2 -1.1 24 97-122 10-34 (42)
207 PF05399 EVI2A: Ectropic viral 58.2 28 0.0006 25.6 4.7 20 22-41 126-145 (227)
208 PHA03054 IMV membrane protein; 58.2 26 0.00056 21.1 3.8 24 21-44 45-68 (72)
209 PF04478 Mid2: Mid2 like cell 58.0 1.8 3.9E-05 30.0 -1.3 14 39-52 67-80 (154)
210 PF15102 TMEM154: TMEM154 prot 57.6 5.1 0.00011 27.6 0.8 10 19-28 54-63 (146)
211 PF01299 Lamp: Lysosome-associ 57.2 10 0.00022 29.1 2.6 27 25-51 272-299 (306)
212 PHA02819 hypothetical protein; 57.1 29 0.00063 20.8 3.9 24 21-44 43-66 (71)
213 KOG3579 Predicted E3 ubiquitin 55.4 5.5 0.00012 30.6 0.8 40 75-114 267-306 (352)
214 PF02480 Herpes_gE: Alphaherpe 55.4 3.9 8.5E-05 33.3 0.0 26 27-53 360-385 (439)
215 PF04423 Rad50_zn_hook: Rad50 54.5 3.7 8.1E-05 23.0 -0.2 10 116-125 22-31 (54)
216 PHA03265 envelope glycoprotein 54.3 10 0.00023 30.0 2.1 14 41-54 366-379 (402)
217 PF05440 MtrB: Tetrahydrometha 53.9 11 0.00023 24.2 1.8 22 15-36 74-95 (97)
218 PF07010 Endomucin: Endomucin; 53.8 48 0.001 24.7 5.4 27 22-48 189-215 (259)
219 PHA02975 hypothetical protein; 53.7 35 0.00075 20.4 3.8 25 21-45 41-65 (69)
220 PRK13460 F0F1 ATP synthase sub 53.7 31 0.00067 24.1 4.3 9 16-24 8-16 (173)
221 PHA03099 epidermal growth fact 53.6 17 0.00038 24.5 2.8 21 30-50 107-127 (139)
222 PF12877 DUF3827: Domain of un 53.5 18 0.00039 30.9 3.5 28 9-36 258-285 (684)
223 PF12575 DUF3753: Protein of u 53.3 40 0.00088 20.4 4.1 24 21-44 45-68 (72)
224 PF11770 GAPT: GRB2-binding ad 53.1 4.8 0.0001 27.9 0.2 28 17-44 5-32 (158)
225 COG1622 CyoA Heme/copper-type 53.0 31 0.00067 25.9 4.5 38 15-53 26-63 (247)
226 PF11044 TMEMspv1-c74-12: Plec 52.6 38 0.00081 18.5 3.9 14 23-36 8-21 (49)
227 PF14311 DUF4379: Domain of un 52.3 9.7 0.00021 21.3 1.3 23 97-120 33-55 (55)
228 TIGR02866 CoxB cytochrome c ox 52.3 25 0.00054 25.3 3.8 11 39-49 28-38 (201)
229 PF15298 AJAP1_PANP_C: AJAP1/P 51.2 7.4 0.00016 28.2 0.8 36 18-53 94-131 (205)
230 COG4357 Zinc finger domain con 51.2 14 0.0003 23.7 2.0 28 98-126 65-92 (105)
231 KOG4577 Transcription factor L 50.8 4.3 9.2E-05 31.2 -0.4 41 75-125 91-131 (383)
232 PLN02638 cellulose synthase A 50.5 24 0.00052 32.0 3.9 51 75-125 16-70 (1079)
233 KOG1729 FYVE finger containing 49.8 2.6 5.7E-05 32.3 -1.7 38 76-114 214-251 (288)
234 PF02790 COX2_TM: Cytochrome C 49.7 35 0.00075 20.5 3.7 47 2-48 2-48 (84)
235 PF14169 YdjO: Cold-inducible 49.7 10 0.00022 22.0 1.1 14 114-127 39-52 (59)
236 PF05454 DAG1: Dystroglycan (D 49.5 5.5 0.00012 30.6 0.0 12 15-26 139-150 (290)
237 PF07282 OrfB_Zn_ribbon: Putat 49.2 15 0.00032 21.4 1.9 33 77-109 29-63 (69)
238 PF15179 Myc_target_1: Myc tar 49.0 53 0.0011 23.6 4.8 15 18-32 19-33 (197)
239 PRK11088 rrmA 23S rRNA methylt 48.2 13 0.00028 27.8 1.8 25 77-102 3-27 (272)
240 PF13807 GNVR: G-rich domain o 48.2 53 0.0012 19.8 4.3 19 18-36 56-74 (82)
241 PRK06531 yajC preprotein trans 48.0 16 0.00035 24.1 2.0 8 102-109 74-81 (113)
242 PRK01741 cell division protein 47.6 24 0.00052 27.7 3.2 27 26-52 6-32 (332)
243 COG1545 Predicted nucleic-acid 47.5 9.7 0.00021 26.0 1.0 22 95-124 32-53 (140)
244 KOG2041 WD40 repeat protein [G 47.5 16 0.00034 32.0 2.3 27 95-125 1159-1185(1189)
245 PF06750 DiS_P_DiS: Bacterial 47.5 12 0.00027 23.5 1.4 37 76-125 33-69 (92)
246 PF01708 Gemini_mov: Geminivir 47.4 48 0.001 20.9 3.9 21 4-24 21-41 (91)
247 TIGR01478 STEVOR variant surfa 47.2 29 0.00063 26.7 3.5 23 14-36 255-277 (295)
248 smart00647 IBR In Between Ring 47.0 5.1 0.00011 22.7 -0.4 20 91-110 39-58 (64)
249 PF10083 DUF2321: Uncharacteri 46.8 11 0.00025 26.2 1.2 43 80-125 8-50 (158)
250 TIGR01477 RIFIN variant surfac 46.8 34 0.00073 27.1 3.9 34 18-51 308-341 (353)
251 PLN02915 cellulose synthase A 46.7 23 0.00051 32.0 3.3 51 75-125 14-68 (1044)
252 PF09943 DUF2175: Uncharacteri 46.3 20 0.00043 23.2 2.2 34 77-112 3-36 (101)
253 PF05502 Dynactin_p62: Dynacti 46.0 12 0.00026 30.9 1.4 44 75-130 25-68 (483)
254 PTZ00046 rifin; Provisional 45.7 36 0.00077 27.1 3.9 35 17-51 312-346 (358)
255 PF07245 Phlebovirus_G2: Phleb 45.6 29 0.00064 28.9 3.6 6 15-20 454-459 (507)
256 COG2871 NqrF Na+-transporting 45.6 18 0.00038 28.2 2.2 21 115-135 76-96 (410)
257 PF09451 ATG27: Autophagy-rela 44.9 33 0.00071 25.9 3.6 13 16-28 197-209 (268)
258 KOG1815 Predicted E3 ubiquitin 44.9 6.1 0.00013 32.1 -0.4 39 75-113 225-267 (444)
259 TIGR01195 oadG_fam sodium pump 44.8 59 0.0013 20.0 4.1 13 23-35 12-24 (82)
260 PRK03427 cell division protein 44.6 42 0.00091 26.4 4.1 27 26-52 8-34 (333)
261 KOG4218 Nuclear hormone recept 44.5 22 0.00047 28.2 2.5 25 73-99 12-36 (475)
262 PF09680 Tiny_TM_bacill: Prote 44.3 28 0.0006 16.4 1.9 9 24-32 6-14 (24)
263 PLN02248 cellulose synthase-li 44.3 28 0.0006 31.8 3.4 29 97-125 149-177 (1135)
264 PF14316 DUF4381: Domain of un 44.2 50 0.0011 22.4 4.1 9 23-31 20-28 (146)
265 KOG4443 Putative transcription 43.9 14 0.0003 31.6 1.5 27 97-123 40-71 (694)
266 PF15353 HECA: Headcase protei 43.6 16 0.00035 23.7 1.5 14 98-111 40-53 (107)
267 PF06422 PDR_CDR: CDR ABC tran 43.4 51 0.0011 21.1 3.8 20 18-37 46-65 (103)
268 PF10883 DUF2681: Protein of u 43.3 60 0.0013 20.4 3.9 9 28-36 6-14 (87)
269 PF14991 MLANA: Protein melan- 43.1 3.6 7.8E-05 27.1 -1.6 15 37-51 38-52 (118)
270 PF02318 FYVE_2: FYVE-type zin 42.8 16 0.00034 24.0 1.4 33 75-108 53-87 (118)
271 CHL00038 psbL photosystem II p 42.6 51 0.0011 17.2 3.7 14 16-29 12-25 (38)
272 PF13832 zf-HC5HC2H_2: PHD-zin 42.6 21 0.00045 22.8 1.9 34 75-110 54-88 (110)
273 PF15116 CD52: CAMPATH-1 antig 42.0 19 0.00041 19.5 1.3 26 3-28 10-35 (44)
274 PF08135 EPV_E5: Major transfo 41.8 57 0.0012 17.5 4.2 25 20-44 4-28 (44)
275 COG3115 ZipA Cell division pro 41.7 38 0.00081 26.3 3.4 25 26-50 7-31 (324)
276 TIGR03141 cytochro_ccmD heme e 41.7 58 0.0013 17.5 4.0 9 19-27 7-15 (45)
277 PRK06287 cobalt transport prot 41.6 57 0.0012 21.2 3.9 25 21-45 76-100 (107)
278 COG3492 Uncharacterized protei 41.2 15 0.00033 23.3 1.0 12 101-112 42-53 (104)
279 KOG1245 Chromatin remodeling c 41.1 9.6 0.00021 35.5 0.2 49 75-124 1107-1159(1404)
280 smart00734 ZnF_Rad18 Rad18-lik 41.1 14 0.0003 17.6 0.7 9 116-124 3-11 (26)
281 PF14851 FAM176: FAM176 family 40.7 1E+02 0.0022 21.5 5.2 29 21-49 19-47 (153)
282 PF11157 DUF2937: Protein of u 40.6 66 0.0014 22.6 4.3 22 16-37 130-151 (167)
283 PF00130 C1_1: Phorbol esters/ 40.0 20 0.00043 19.6 1.3 35 74-109 9-45 (53)
284 KOG2678 Predicted membrane pro 39.8 49 0.0011 24.6 3.6 18 19-36 215-232 (244)
285 PHA02692 hypothetical protein; 39.8 67 0.0015 19.3 3.6 7 24-30 45-51 (70)
286 COG5627 MMS21 DNA repair prote 39.5 15 0.00033 27.5 1.0 41 76-119 189-231 (275)
287 PLN02400 cellulose synthase 39.5 28 0.00061 31.6 2.8 51 75-125 35-89 (1085)
288 PF05605 zf-Di19: Drought indu 39.2 2.8 6.2E-05 23.5 -2.3 39 76-125 2-42 (54)
289 PRK03564 formate dehydrogenase 38.9 9.6 0.00021 29.6 -0.1 42 75-122 186-234 (309)
290 PLN02195 cellulose synthase A 38.7 44 0.00096 30.1 3.8 51 75-125 5-59 (977)
291 PRK13454 F0F1 ATP synthase sub 38.7 66 0.0014 22.7 4.2 9 15-23 20-28 (181)
292 PRK11827 hypothetical protein; 38.4 11 0.00024 22.0 0.1 17 109-125 3-19 (60)
293 PF15106 TMEM156: TMEM156 prot 38.3 87 0.0019 23.1 4.7 8 23-30 177-184 (226)
294 KOG1842 FYVE finger-containing 38.2 12 0.00026 30.5 0.3 60 75-138 14-103 (505)
295 PF15168 TRIQK: Triple QxxK/R 37.9 89 0.0019 19.1 3.9 20 27-46 53-72 (79)
296 COG4062 MtrB Tetrahydromethano 37.8 1.1E+02 0.0023 19.8 4.5 8 1-8 54-61 (108)
297 TIGR00686 phnA alkylphosphonat 37.3 20 0.00042 23.5 1.1 27 77-103 3-30 (109)
298 PF03119 DNA_ligase_ZBD: NAD-d 37.0 10 0.00022 18.4 -0.2 12 116-127 1-12 (28)
299 PHA02610 uvsY.-2 hypothetical 36.9 12 0.00027 21.0 0.1 14 116-129 3-16 (53)
300 PF13771 zf-HC5HC2H: PHD-like 36.7 23 0.0005 21.6 1.4 34 75-109 35-68 (90)
301 PF03107 C1_2: C1 domain; Int 36.7 25 0.00055 17.1 1.3 28 78-106 2-29 (30)
302 TIGR01433 CyoA cytochrome o ub 36.7 54 0.0012 24.2 3.5 8 43-50 51-58 (226)
303 PRK01343 zinc-binding protein; 36.5 23 0.00051 20.4 1.2 12 114-125 9-20 (57)
304 PF11755 DUF3311: Protein of u 36.4 92 0.002 18.3 4.3 30 15-46 23-52 (66)
305 PF01299 Lamp: Lysosome-associ 36.3 24 0.00053 27.0 1.7 32 19-50 270-301 (306)
306 KOG1094 Discoidin domain recep 36.1 67 0.0015 27.7 4.3 17 118-135 484-500 (807)
307 PF05510 Sarcoglycan_2: Sarcog 35.9 56 0.0012 26.3 3.7 13 41-53 303-315 (386)
308 TIGR01562 FdhE formate dehydro 35.8 9.2 0.0002 29.6 -0.6 42 76-123 184-233 (305)
309 COG4736 CcoQ Cbb3-type cytochr 35.6 75 0.0016 18.5 3.3 8 23-30 10-17 (60)
310 PF05337 CSF-1: Macrophage col 35.6 12 0.00027 28.5 0.0 31 20-50 224-254 (285)
311 TIGR03758 conj_TIGR03758 integ 35.5 47 0.001 19.7 2.4 33 10-42 4-36 (65)
312 KOG2071 mRNA cleavage and poly 35.5 16 0.00035 30.7 0.7 34 75-110 512-556 (579)
313 KOG2231 Predicted E3 ubiquitin 35.3 30 0.00066 29.8 2.2 44 78-125 2-52 (669)
314 PF07234 DUF1426: Protein of u 34.9 79 0.0017 20.4 3.6 16 20-35 13-28 (117)
315 KOG4323 Polycomb-like PHD Zn-f 34.8 25 0.00054 28.9 1.6 51 75-125 167-226 (464)
316 smart00834 CxxC_CXXC_SSSS Puta 34.7 10 0.00022 19.6 -0.5 11 114-124 26-36 (41)
317 PF10717 ODV-E18: Occlusion-de 34.7 1.2E+02 0.0025 19.0 5.0 24 16-39 18-41 (85)
318 TIGR00985 3a0801s04tom mitocho 34.6 51 0.0011 22.8 2.9 19 27-45 10-28 (148)
319 smart00531 TFIIE Transcription 34.4 40 0.00088 22.9 2.4 11 115-125 124-134 (147)
320 KOG3352 Cytochrome c oxidase, 34.4 22 0.00047 24.7 1.0 6 79-85 114-119 (153)
321 TIGR01006 polys_exp_MPA1 polys 34.2 1.1E+02 0.0023 22.1 4.8 32 19-50 173-204 (226)
322 PF11084 DUF2621: Protein of u 34.2 1.3E+02 0.0029 20.4 4.7 14 19-32 3-16 (141)
323 PF12955 DUF3844: Domain of un 34.0 84 0.0018 20.4 3.7 20 16-35 64-83 (103)
324 TIGR02205 septum_zipA cell div 33.7 41 0.00088 25.9 2.5 21 26-46 5-25 (284)
325 PRK00965 tetrahydromethanopter 33.1 28 0.00061 22.3 1.3 19 16-34 76-94 (96)
326 TIGR01732 tiny_TM_bacill conse 32.7 63 0.0014 15.5 2.2 9 24-32 8-16 (26)
327 KOG1512 PHD Zn-finger protein 32.4 18 0.0004 27.9 0.5 33 75-108 313-345 (381)
328 PF13260 DUF4051: Protein of u 32.3 95 0.0021 17.2 3.4 13 39-51 19-31 (54)
329 COG4847 Uncharacterized protei 32.3 41 0.0009 21.5 2.0 34 76-111 6-39 (103)
330 PF15122 TMEM206: TMEM206 prot 32.2 99 0.0021 23.4 4.2 10 94-104 72-81 (298)
331 PHA03189 UL14 tegument protein 31.9 93 0.002 24.3 4.2 47 6-52 274-320 (348)
332 smart00109 C1 Protein kinase C 31.9 50 0.0011 17.2 2.1 34 75-109 10-44 (49)
333 PF09835 DUF2062: Uncharacteri 31.8 76 0.0016 21.5 3.5 8 25-32 117-124 (154)
334 PF05715 zf-piccolo: Piccolo Z 31.7 31 0.00068 20.0 1.2 12 114-125 2-13 (61)
335 PRK15136 multidrug efflux syst 31.6 1.4E+02 0.003 23.8 5.4 14 1-14 1-14 (390)
336 KOG2487 RNA polymerase II tran 31.6 16 0.00035 27.9 0.1 14 75-88 272-285 (314)
337 PF14584 DUF4446: Protein of u 31.5 1.5E+02 0.0033 20.5 4.9 11 75-85 96-106 (151)
338 PLN02971 tryptophan N-hydroxyl 31.4 68 0.0015 26.5 3.7 29 4-32 9-37 (543)
339 PF05810 NinF: NinF protein; 31.4 42 0.00091 19.2 1.7 11 102-112 34-44 (58)
340 PRK09510 tolA cell envelope in 31.2 76 0.0016 25.6 3.7 21 19-39 10-30 (387)
341 PF06679 DUF1180: Protein of u 31.1 1.2E+02 0.0025 21.4 4.3 10 32-41 100-109 (163)
342 TIGR03017 EpsF chain length de 31.1 1.3E+02 0.0028 24.1 5.1 34 16-49 392-425 (444)
343 COG5456 Predicted integral mem 31.0 1.3E+02 0.0029 21.0 4.4 20 26-45 20-39 (166)
344 PF14914 LRRC37AB_C: LRRC37A/B 30.7 1.2E+02 0.0026 21.1 4.1 6 18-23 113-118 (154)
345 TIGR00383 corA magnesium Mg(2+ 30.7 88 0.0019 23.8 4.0 23 17-39 285-307 (318)
346 PF13453 zf-TFIIB: Transcripti 30.7 23 0.00051 18.5 0.6 10 116-125 1-10 (41)
347 KOG4085 Uncharacterized conser 30.6 1.9E+02 0.0041 20.1 5.2 14 1-14 1-16 (175)
348 PF11660 DUF3262: Protein of u 30.6 69 0.0015 19.4 2.8 32 10-41 5-36 (76)
349 cd00029 C1 Protein kinase C co 30.6 38 0.00083 17.9 1.5 34 75-109 10-45 (50)
350 PHA02673 ORF109 EEV glycoprote 30.3 92 0.002 21.8 3.6 22 20-41 34-55 (161)
351 COG1288 Predicted membrane pro 30.1 41 0.00089 27.7 2.1 27 29-55 221-247 (481)
352 KOG0955 PHD finger protein BR1 30.0 38 0.00083 30.8 2.1 38 71-108 214-252 (1051)
353 TIGR00859 ENaC sodium channel 29.9 1.6E+02 0.0036 25.0 5.7 13 21-33 505-517 (595)
354 PF03908 Sec20: Sec20; InterP 29.8 79 0.0017 19.6 3.0 8 29-36 74-81 (92)
355 PF11628 TCR_zetazeta: T-cell 29.7 86 0.0019 15.9 2.9 19 31-49 10-28 (33)
356 PRK01026 tetrahydromethanopter 29.5 1.2E+02 0.0026 18.5 3.6 10 20-29 50-59 (77)
357 cd00729 rubredoxin_SM Rubredox 29.4 34 0.00073 17.3 1.0 8 116-123 20-27 (34)
358 KOG4482 Sarcoglycan complex, a 29.4 85 0.0018 25.3 3.7 17 15-31 292-308 (449)
359 PF07406 NICE-3: NICE-3 protei 29.4 94 0.002 22.3 3.7 10 102-111 124-133 (186)
360 PRK10220 hypothetical protein; 29.4 41 0.00089 22.0 1.7 26 77-102 4-30 (111)
361 PF12297 EVC2_like: Ellis van 29.2 1.3E+02 0.0029 24.5 4.7 21 15-35 61-81 (429)
362 PRK15103 paraquat-inducible me 29.0 1.8E+02 0.004 23.5 5.7 7 78-84 223-229 (419)
363 TIGR01294 P_lamban phospholamb 28.6 18 0.00038 19.8 -0.1 20 12-31 23-42 (52)
364 KOG3816 Cell differentiation r 28.6 26 0.00057 28.3 0.8 27 80-110 92-118 (526)
365 PRK11901 hypothetical protein; 28.1 64 0.0014 25.3 2.8 18 26-43 38-55 (327)
366 PF04418 DUF543: Domain of unk 27.9 62 0.0013 19.7 2.2 25 1-27 1-25 (75)
367 PF13706 PepSY_TM_3: PepSY-ass 27.9 95 0.0021 15.8 3.3 18 20-37 9-26 (37)
368 PF03988 DUF347: Repeat of Unk 27.8 1.2E+02 0.0026 17.0 3.5 9 20-28 25-33 (55)
369 KOG0289 mRNA splicing factor [ 27.8 57 0.0012 26.7 2.5 45 78-125 2-46 (506)
370 PRK13881 conjugal transfer pro 27.6 1.2E+02 0.0026 25.1 4.3 21 16-36 25-45 (472)
371 PHA03093 EEV glycoprotein; Pro 27.2 1.4E+02 0.003 21.5 4.1 28 19-46 36-63 (185)
372 PF13937 DUF4212: Domain of un 27.0 1.6E+02 0.0035 18.1 4.6 26 16-41 40-65 (81)
373 PF05624 LSR: Lipolysis stimul 27.0 54 0.0012 18.0 1.6 14 27-40 7-20 (49)
374 PF15339 Afaf: Acrosome format 26.6 1.6E+02 0.0035 21.1 4.3 16 18-33 126-141 (200)
375 PF04272 Phospholamban: Phosph 26.5 11 0.00023 20.7 -1.2 19 13-31 24-42 (52)
376 PF12088 DUF3565: Protein of u 26.3 46 0.001 19.4 1.3 16 88-104 8-23 (61)
377 PF05568 ASFV_J13L: African sw 26.3 1.3E+02 0.0029 20.9 3.8 37 17-53 27-63 (189)
378 KOG1538 Uncharacterized conser 26.3 30 0.00065 30.1 0.8 32 94-125 1046-1077(1081)
379 COG0675 Transposase and inacti 26.2 48 0.001 25.0 1.9 32 75-109 308-339 (364)
380 PF07774 DUF1620: Protein of u 26.2 1.9E+02 0.0042 21.2 4.9 19 8-26 172-190 (217)
381 PF05510 Sarcoglycan_2: Sarcog 25.8 2.5E+02 0.0054 22.7 5.8 41 15-55 280-320 (386)
382 PF11446 DUF2897: Protein of u 25.7 1.2E+02 0.0027 17.2 3.0 20 27-46 8-27 (55)
383 PF05191 ADK_lid: Adenylate ki 25.6 31 0.00068 17.7 0.5 28 96-125 5-32 (36)
384 PRK01658 holin-like protein; V 25.4 1.4E+02 0.003 19.9 3.7 20 18-37 85-104 (122)
385 PRK09546 zntB zinc transporter 25.4 1.1E+02 0.0024 23.5 3.8 21 17-37 291-311 (324)
386 COG4477 EzrA Negative regulato 25.3 76 0.0017 26.7 2.9 22 28-49 4-25 (570)
387 COG2956 Predicted N-acetylgluc 25.3 29 0.00063 27.5 0.5 19 92-122 355-376 (389)
388 KOG2113 Predicted RNA binding 25.1 71 0.0015 25.1 2.5 45 75-125 342-387 (394)
389 COG2835 Uncharacterized conser 25.1 34 0.00073 19.9 0.6 10 116-125 10-19 (60)
390 PF09835 DUF2062: Uncharacteri 25.0 1.6E+02 0.0035 19.9 4.2 31 18-48 114-144 (154)
391 PRK10525 cytochrome o ubiquino 24.9 94 0.002 24.3 3.2 18 34-51 54-71 (315)
392 PRK04125 murein hydrolase regu 24.8 1.2E+02 0.0027 20.7 3.5 18 19-36 89-106 (141)
393 PF09777 OSTMP1: Osteopetrosis 24.7 67 0.0015 23.9 2.3 25 27-51 194-218 (237)
394 KOG1973 Chromatin remodeling p 24.6 14 0.0003 28.1 -1.4 29 97-125 239-270 (274)
395 KOG3054 Uncharacterized conser 24.6 1.1E+02 0.0024 23.2 3.4 8 43-50 20-27 (299)
396 PRK00420 hypothetical protein; 24.6 65 0.0014 21.2 2.0 12 76-87 23-34 (112)
397 PRK12657 putative monovalent c 24.6 2E+02 0.0043 18.4 4.3 24 23-46 64-87 (100)
398 COG0598 CorA Mg2+ and Co2+ tra 24.6 1E+02 0.0022 23.8 3.4 26 16-41 288-313 (322)
399 PF10886 DUF2685: Protein of u 24.6 32 0.00069 19.6 0.4 12 116-127 3-14 (54)
400 KOG1140 N-end rule pathway, re 24.4 39 0.00084 32.3 1.2 16 97-112 1150-1165(1738)
401 PF13209 DUF4017: Protein of u 24.4 55 0.0012 18.6 1.4 32 15-46 25-56 (60)
402 PF03884 DUF329: Domain of unk 24.4 23 0.00049 20.4 -0.2 11 116-126 4-14 (57)
403 PRK02919 oxaloacetate decarbox 24.4 1.8E+02 0.0039 17.9 4.1 12 23-34 15-26 (82)
404 KOG3799 Rab3 effector RIM1 and 24.4 37 0.0008 23.2 0.8 19 71-89 60-79 (169)
405 PF06697 DUF1191: Protein of u 24.1 1.2E+02 0.0027 23.2 3.6 22 25-46 220-241 (278)
406 TIGR01710 typeII_sec_gspG gene 24.0 1.4E+02 0.0029 19.9 3.6 10 27-36 9-18 (134)
407 PF06160 EzrA: Septation ring 24.0 56 0.0012 27.5 2.0 6 39-44 12-17 (560)
408 PF03302 VSP: Giardia variant- 24.0 37 0.00081 27.2 0.9 19 18-36 362-380 (397)
409 PRK14750 kdpF potassium-transp 23.8 1.1E+02 0.0023 15.0 3.0 7 29-35 6-12 (29)
410 PF15446 zf-PHD-like: PHD/FYVE 23.6 45 0.00099 23.6 1.2 31 79-110 2-35 (175)
411 PHA03289 envelope glycoprotein 23.6 2.3E+02 0.005 22.4 5.0 21 1-21 242-262 (352)
412 PRK14748 kdpF potassium-transp 23.5 1.1E+02 0.0023 15.0 3.0 7 29-35 6-12 (29)
413 COG4647 AcxC Acetone carboxyla 23.3 46 0.00099 22.6 1.1 23 78-104 59-81 (165)
414 TIGR02605 CxxC_CxxC_SSSS putat 23.3 20 0.00043 19.6 -0.6 25 97-122 10-34 (52)
415 PF04906 Tweety: Tweety; Inte 23.2 1.3E+02 0.0029 24.2 3.9 20 16-35 15-34 (406)
416 PF07010 Endomucin: Endomucin; 23.1 3.3E+02 0.0072 20.4 6.1 18 36-53 200-217 (259)
417 PRK15348 type III secretion sy 23.1 2E+02 0.0043 21.7 4.5 12 21-32 218-229 (249)
418 PF06170 DUF983: Protein of un 23.1 31 0.00067 21.5 0.2 26 109-134 3-28 (86)
419 TIGR00155 pqiA_fam integral me 23.0 1.9E+02 0.0042 23.3 4.8 24 78-102 217-240 (403)
420 PF07227 DUF1423: Protein of u 22.9 59 0.0013 26.6 1.8 32 77-109 129-163 (446)
421 PF09356 Phage_BR0599: Phage c 22.8 1E+02 0.0022 18.8 2.5 25 85-110 40-64 (80)
422 PF03966 Trm112p: Trm112p-like 22.7 61 0.0013 18.9 1.5 8 95-102 56-63 (68)
423 PF12773 DZR: Double zinc ribb 22.6 80 0.0017 16.9 1.9 42 79-127 1-42 (50)
424 TIGR01432 QOXA cytochrome aa3 22.4 1.1E+02 0.0024 22.3 3.1 58 9-66 11-68 (217)
425 PF09889 DUF2116: Uncharacteri 22.3 1.7E+02 0.0037 16.9 3.3 23 23-45 37-59 (59)
426 PRK00753 psbL photosystem II r 22.3 1.3E+02 0.0029 15.7 3.7 33 1-37 2-34 (39)
427 TIGR00540 hemY_coli hemY prote 22.3 1.3E+02 0.0028 23.9 3.7 53 3-55 22-86 (409)
428 PRK08476 F0F1 ATP synthase sub 22.3 1.8E+02 0.0038 19.6 3.9 32 20-51 3-34 (141)
429 PF13314 DUF4083: Domain of un 22.2 1.7E+02 0.0037 16.9 4.7 40 20-59 1-40 (58)
430 PHA02681 ORF089 virion membran 22.2 1.6E+02 0.0035 18.3 3.2 26 24-49 1-26 (92)
431 PF12259 DUF3609: Protein of u 22.1 1.2E+02 0.0026 24.1 3.4 45 29-73 303-347 (361)
432 PF10764 Gin: Inhibitor of sig 22.1 51 0.0011 18.0 0.9 24 78-106 1-24 (46)
433 PF12263 DUF3611: Protein of u 22.1 3.1E+02 0.0066 19.7 5.9 55 4-62 43-97 (183)
434 PF07948 Nairovirus_M: Nairovi 22.1 11 0.00024 31.4 -2.4 91 1-98 444-541 (645)
435 PF10146 zf-C4H2: Zinc finger- 22.0 68 0.0015 23.8 1.9 21 103-123 197-217 (230)
436 PRK11595 DNA utilization prote 21.8 85 0.0018 22.9 2.4 38 79-125 8-45 (227)
437 TIGR03521 GldG gliding-associa 21.7 1.6E+02 0.0034 24.8 4.2 31 22-52 522-552 (552)
438 PF13268 DUF4059: Protein of u 21.6 1.3E+02 0.0027 18.2 2.6 33 25-57 12-44 (72)
439 COG3813 Uncharacterized protei 21.6 80 0.0017 19.2 1.8 55 79-139 8-64 (84)
440 COG3058 FdhE Uncharacterized p 21.5 1.9E+02 0.0041 22.4 4.1 76 28-123 151-234 (308)
441 PF05478 Prominin: Prominin; 21.4 95 0.0021 27.4 2.9 37 15-51 765-801 (806)
442 PF12072 DUF3552: Domain of un 21.3 1.3E+02 0.0027 21.7 3.1 28 26-53 1-28 (201)
443 KOG4451 Uncharacterized conser 21.1 67 0.0015 24.0 1.7 21 103-123 252-272 (286)
444 PF09237 GAGA: GAGA factor; I 21.1 25 0.00054 19.9 -0.4 9 116-124 26-34 (54)
445 PF03597 CcoS: Cytochrome oxid 21.1 1.6E+02 0.0034 16.0 3.5 27 24-50 3-29 (45)
446 PF11190 DUF2976: Protein of u 21.1 1.5E+02 0.0034 18.5 3.1 22 21-42 60-81 (87)
447 PF12729 4HB_MCP_1: Four helix 21.0 2.2E+02 0.0048 18.6 4.2 33 20-52 4-36 (181)
448 KOG2789 Putative Zn-finger pro 21.0 54 0.0012 26.6 1.2 60 78-139 76-136 (482)
449 PF14654 Epiglycanin_C: Mucin, 20.9 2.5E+02 0.0053 18.1 5.0 44 2-49 1-44 (106)
450 PF14319 Zn_Tnp_IS91: Transpos 20.9 73 0.0016 20.7 1.7 32 82-120 33-66 (111)
451 PF15345 TMEM51: Transmembrane 20.9 2.6E+02 0.0056 20.9 4.7 76 2-78 40-117 (233)
452 COG3924 Predicted membrane pro 20.6 2.1E+02 0.0046 17.3 4.9 38 11-48 33-70 (80)
453 PF10215 Ost4: Oligosaccaryltr 20.5 1.4E+02 0.0031 15.3 3.6 21 24-44 8-28 (35)
454 TIGR02098 MJ0042_CXXC MJ0042 f 20.5 1E+02 0.0022 15.5 1.9 25 78-102 4-35 (38)
455 PTZ00303 phosphatidylinositol 20.4 68 0.0015 28.6 1.8 34 70-106 454-495 (1374)
456 PF11014 DUF2852: Protein of u 20.4 2.6E+02 0.0056 18.5 4.2 29 23-51 10-38 (115)
457 TIGR03007 pepcterm_ChnLen poly 20.4 2.3E+02 0.0049 23.1 4.8 45 1-50 399-443 (498)
458 PF15145 DUF4577: Domain of un 20.2 2.1E+02 0.0046 18.9 3.6 38 6-43 49-86 (128)
459 PF11682 DUF3279: Protein of u 20.2 55 0.0012 22.1 1.0 18 98-124 103-120 (128)
460 KOG4430 Topoisomerase I-bindin 20.0 45 0.00097 28.1 0.6 57 75-131 259-315 (553)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.1e-20 Score=144.56 Aligned_cols=70 Identities=33% Similarity=0.760 Sum_probs=54.6
Q ss_pred ccccccccCCCC-CCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCC-CCcccCCCCCCCCcccCCC
Q 035703 64 IGREYENARTND-YGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSA-TCPLCRSSPATPLAEVVPL 134 (139)
Q Consensus 64 ~~~~~~~~~~~~-~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~-~CP~CR~~v~~~~~~~~~~ 134 (139)
....|.+...++ .+.|+||||+|+.||+++.|| |+|.||..||++||.+.+ .||+||+++.+..++-..+
T Consensus 216 p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~~~~~~ 287 (348)
T KOG4628|consen 216 PVRTFTKGDDEDATDTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSGSEPVS 287 (348)
T ss_pred CcEEeccccccCCCceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCCCCCCCCcc
Confidence 334444443332 258999999999999999999 999999999999997665 5999999998666554433
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.73 E-value=1.2e-18 Score=96.88 Aligned_cols=44 Identities=41% Similarity=1.158 Sum_probs=40.1
Q ss_pred CccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccC
Q 035703 77 GPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCR 121 (139)
Q Consensus 77 ~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR 121 (139)
++|+||++++..++.+..++ |||.||.+||.+|++++.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence 47999999999889999999 999999999999999999999997
No 3
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.1e-15 Score=116.93 Aligned_cols=56 Identities=34% Similarity=0.822 Sum_probs=47.2
Q ss_pred cccCCCCCCccccCcccccCCC----------ceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 69 ENARTNDYGPCSICLCDYKPKD----------SVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 69 ~~~~~~~~~~C~ICl~~~~~~~----------~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
+++-.++|..|.||+|++-.++ +...+| |||.+|.+|++.|++++++||.||.++.
T Consensus 280 ~eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 280 EEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred hhhhcCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCccc
Confidence 4555778999999999954332 445788 9999999999999999999999999976
No 4
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.55 E-value=3.7e-15 Score=91.33 Aligned_cols=45 Identities=38% Similarity=0.919 Sum_probs=35.3
Q ss_pred CCccccCcccccCC----------CceeecCCCCCcccHHHHHHHHhCCCCCcccC
Q 035703 76 YGPCSICLCDYKPK----------DSVRCIPDCHHCFHADCVDEWLRMSATCPLCR 121 (139)
Q Consensus 76 ~~~C~ICl~~~~~~----------~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR 121 (139)
++.|+||++++.+. -.+...+ |||.||..||.+|++.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGP-CGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEET-TSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecc-cCCCEEHHHHHHHHhcCCcCCCCC
Confidence 44599999999422 2334445 999999999999999999999997
No 5
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.49 E-value=2.2e-14 Score=105.53 Aligned_cols=52 Identities=29% Similarity=0.778 Sum_probs=42.7
Q ss_pred CCCCccccCcccccCCCc----eeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 74 NDYGPCSICLCDYKPKDS----VRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 74 ~~~~~C~ICl~~~~~~~~----~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
..+.+|+||++++.+++. +..++.|+|.||.+||.+|+..+.+||+||.++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 456789999999876431 2345459999999999999999999999999865
No 6
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.7e-14 Score=107.79 Aligned_cols=52 Identities=40% Similarity=1.044 Sum_probs=47.0
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHh-CCCCCcccCCCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLR-MSATCPLCRSSPATP 127 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~-~~~~CP~CR~~v~~~ 127 (139)
.+.+|+|||++|-.+++++++| |+|.||..|++.|+. -+..||+||.++.++
T Consensus 322 ~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPPp 374 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPPP 374 (374)
T ss_pred CCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCCC
Confidence 5578999999999999999999 999999999999997 566899999998753
No 7
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=6.2e-14 Score=104.19 Aligned_cols=49 Identities=35% Similarity=0.756 Sum_probs=43.3
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPATP 127 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~~~ 127 (139)
.+..|.+|||..++ ...+| |||+||+.||.+|...+..||+||..+.++
T Consensus 238 a~~kC~LCLe~~~~---pSaTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 238 ATRKCSLCLENRSN---PSATP-CGHIFCWSCILEWCSEKAECPLCREKFQPS 286 (293)
T ss_pred CCCceEEEecCCCC---CCcCc-CcchHHHHHHHHHHccccCCCcccccCCCc
Confidence 66789999999776 44677 999999999999999999999999998765
No 8
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.36 E-value=8.3e-13 Score=93.88 Aligned_cols=57 Identities=28% Similarity=0.662 Sum_probs=43.8
Q ss_pred CCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhC----------------CCCCcccCCCCCCCCcccCCCc
Q 035703 73 TNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRM----------------SATCPLCRSSPATPLAEVVPLA 135 (139)
Q Consensus 73 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~----------------~~~CP~CR~~v~~~~~~~~~~~ 135 (139)
..++.+|+||++.+++ ..+++ |||.||+.||..|+.. ...||+||.++.. +.++|.+
T Consensus 15 ~~~~~~CpICld~~~d---PVvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~--~~LvPiy 87 (193)
T PLN03208 15 SGGDFDCNICLDQVRD---PVVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE--ATLVPIY 87 (193)
T ss_pred CCCccCCccCCCcCCC---cEEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh--hcEEEee
Confidence 3366789999999765 34567 9999999999999842 2479999999873 3555554
No 9
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.36 E-value=7.2e-13 Score=75.38 Aligned_cols=46 Identities=30% Similarity=0.808 Sum_probs=39.2
Q ss_pred CCccccCcccccCCCceeecCCCCCc-ccHHHHHHHHhCCCCCcccCCCCC
Q 035703 76 YGPCSICLCDYKPKDSVRCIPDCHHC-FHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 76 ~~~C~ICl~~~~~~~~~~~lp~C~H~-fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
+..|.||++...+ +..+| |||. |+..|+..|+..+..||+||+++.
T Consensus 2 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 5689999998654 67788 9999 999999999999999999999875
No 10
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.29 E-value=3.3e-12 Score=70.11 Aligned_cols=44 Identities=43% Similarity=1.168 Sum_probs=36.3
Q ss_pred ccccCcccccCCCceeecCCCCCcccHHHHHHHHhC-CCCCcccCCCC
Q 035703 78 PCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRM-SATCPLCRSSP 124 (139)
Q Consensus 78 ~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~-~~~CP~CR~~v 124 (139)
+|+||++.+. +.....+ |||.||.+|+..|+.. +..||.||..+
T Consensus 1 ~C~iC~~~~~--~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR--EPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh--CceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999983 3455555 9999999999999987 67899999864
No 11
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.29 E-value=2.7e-12 Score=79.80 Aligned_cols=51 Identities=29% Similarity=0.744 Sum_probs=38.5
Q ss_pred CCCccccCcccccC--------CCc-eeecCCCCCcccHHHHHHHHhC---CCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYKP--------KDS-VRCIPDCHHCFHADCVDEWLRM---SATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~~--------~~~-~~~lp~C~H~fH~~Ci~~wl~~---~~~CP~CR~~v~ 125 (139)
+++.|.||...|+. ++. ..+...|+|.||..||.+|++. +.+||+||++..
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 47789999988872 221 2233359999999999999974 458999999764
No 12
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.28 E-value=2.8e-12 Score=69.20 Aligned_cols=39 Identities=36% Similarity=1.069 Sum_probs=32.5
Q ss_pred cccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCccc
Q 035703 79 CSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLC 120 (139)
Q Consensus 79 C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~C 120 (139)
|+||++.+.+ .+..++ |||.|+.+|+..|++++..||+|
T Consensus 1 C~iC~~~~~~--~~~~~~-CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTP-CGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence 8999999876 345677 99999999999999988899988
No 13
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=3.3e-12 Score=92.52 Aligned_cols=58 Identities=33% Similarity=0.678 Sum_probs=45.0
Q ss_pred CCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhC---CCCCcccCCCCCCCCcccCCCcc
Q 035703 73 TNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRM---SATCPLCRSSPATPLAEVVPLAS 136 (139)
Q Consensus 73 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~---~~~CP~CR~~v~~~~~~~~~~~~ 136 (139)
.....+|.||||.-++ .+++. |||.||+.||.+|+.. ++.||+||..|... ..||.|-
T Consensus 44 ~~~~FdCNICLd~akd---PVvTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~--~vvPlYG 104 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKD---PVVTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSID--TVVPLYG 104 (230)
T ss_pred CCCceeeeeeccccCC---CEEee-cccceehHHHHHHHhhcCCCeeCCccccccccc--eEEeeec
Confidence 3466789999998554 34555 9999999999999964 44699999998844 7777763
No 14
>PHA02926 zinc finger-like protein; Provisional
Probab=99.24 E-value=6.5e-12 Score=90.62 Aligned_cols=61 Identities=23% Similarity=0.542 Sum_probs=43.8
Q ss_pred CCCCCccccCcccccCC-----CceeecCCCCCcccHHHHHHHHhCC------CCCcccCCCCCCCCcccCCCccc
Q 035703 73 TNDYGPCSICLCDYKPK-----DSVRCIPDCHHCFHADCVDEWLRMS------ATCPLCRSSPATPLAEVVPLASH 137 (139)
Q Consensus 73 ~~~~~~C~ICl~~~~~~-----~~~~~lp~C~H~fH~~Ci~~wl~~~------~~CP~CR~~v~~~~~~~~~~~~~ 137 (139)
...+.+|+||||..-++ .....++.|+|.||..||..|...+ .+||+||..+. -+.|+.+.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~----~I~pSrf~ 238 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR----NITMSKFY 238 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee----eeccccce
Confidence 34668899999986322 1234566799999999999998643 35999999854 44555443
No 15
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=6.6e-12 Score=102.79 Aligned_cols=53 Identities=30% Similarity=0.742 Sum_probs=45.7
Q ss_pred CCCCCCccccCcccccCCCc--eeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 72 RTNDYGPCSICLCDYKPKDS--VRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 72 ~~~~~~~C~ICl~~~~~~~~--~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
....++.|+||+|++..++. ...++ |+|+||..|+..|++++++||+||..+.
T Consensus 287 ~~~~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 287 LALSDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred hhhcCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhh
Confidence 34468899999999998654 66788 9999999999999999999999999543
No 16
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=4.2e-11 Score=88.50 Aligned_cols=52 Identities=23% Similarity=0.602 Sum_probs=42.9
Q ss_pred CCCCCccccCcccccCCC-------ceeecCCCCCcccHHHHHHHH--hCCCCCcccCCCCC
Q 035703 73 TNDYGPCSICLCDYKPKD-------SVRCIPDCHHCFHADCVDEWL--RMSATCPLCRSSPA 125 (139)
Q Consensus 73 ~~~~~~C~ICl~~~~~~~-------~~~~lp~C~H~fH~~Ci~~wl--~~~~~CP~CR~~v~ 125 (139)
..+|..|+||-..+...+ +...|. |+|+||+.||+.|. .++++||+|+..+.
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 347788999987776443 666787 99999999999996 57789999999875
No 17
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=99.16 E-value=3.5e-11 Score=66.60 Aligned_cols=44 Identities=32% Similarity=0.812 Sum_probs=37.6
Q ss_pred ccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCC
Q 035703 78 PCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRS 122 (139)
Q Consensus 78 ~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~ 122 (139)
.|+||++.+...+...+++ |||+|+.+|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4999999996556677777 9999999999999866778999985
No 18
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=4.3e-11 Score=83.54 Aligned_cols=51 Identities=27% Similarity=0.624 Sum_probs=42.1
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPATP 127 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~~~ 127 (139)
....|+|||+.+++... +-.+|||+||+.||..-++....||+||+.|...
T Consensus 130 ~~~~CPiCl~~~sek~~--vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVP--VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred cccCCCceecchhhccc--cccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence 45679999999886433 3234999999999999999999999999988643
No 19
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.10 E-value=8.1e-11 Score=64.46 Aligned_cols=38 Identities=34% Similarity=0.906 Sum_probs=28.5
Q ss_pred cccCcccccCCCceeecCCCCCcccHHHHHHHHhCC----CCCccc
Q 035703 79 CSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMS----ATCPLC 120 (139)
Q Consensus 79 C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~----~~CP~C 120 (139)
|+||++.|.+ ...++ |||.|+..||..|++.. ..||.|
T Consensus 1 CpiC~~~~~~---Pv~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD---PVSLP-CGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS---EEE-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC---ccccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999987 45677 99999999999999543 369987
No 20
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=99.08 E-value=6.5e-11 Score=64.39 Aligned_cols=39 Identities=46% Similarity=1.151 Sum_probs=32.8
Q ss_pred cccCcccccCCCceeecCCCCCcccHHHHHHHHh--CCCCCccc
Q 035703 79 CSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLR--MSATCPLC 120 (139)
Q Consensus 79 C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~--~~~~CP~C 120 (139)
|+||++.+..+ ...++ |||.|+.+|+.+|++ ....||.|
T Consensus 1 C~iC~~~~~~~--~~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP--VILLP-CGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE--EEETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC--CEEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999998764 34677 999999999999998 55579987
No 21
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=3e-10 Score=90.03 Aligned_cols=51 Identities=29% Similarity=0.797 Sum_probs=39.9
Q ss_pred CCCccccCcccccC---C-----------CceeecCCCCCcccHHHHHHHHh-CCCCCcccCCCCCC
Q 035703 75 DYGPCSICLCDYKP---K-----------DSVRCIPDCHHCFHADCVDEWLR-MSATCPLCRSSPAT 126 (139)
Q Consensus 75 ~~~~C~ICl~~~~~---~-----------~~~~~lp~C~H~fH~~Ci~~wl~-~~~~CP~CR~~v~~ 126 (139)
...+|+|||.++.- + .....+| |+|+||..|+.+|.+ .+..||+||+++.+
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 55679999988751 1 1234568 999999999999998 55599999998753
No 22
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=99.05 E-value=2.1e-10 Score=60.72 Aligned_cols=38 Identities=39% Similarity=1.133 Sum_probs=31.7
Q ss_pred cccCcccccCCCceeecCCCCCcccHHHHHHHHh-CCCCCccc
Q 035703 79 CSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLR-MSATCPLC 120 (139)
Q Consensus 79 C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~-~~~~CP~C 120 (139)
|+||++.. .....++ |||.||..|++.|+. .+..||.|
T Consensus 1 C~iC~~~~---~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence 78999883 3466777 999999999999997 56679987
No 23
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.03 E-value=3.3e-10 Score=67.03 Aligned_cols=51 Identities=20% Similarity=0.413 Sum_probs=42.1
Q ss_pred CccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCCCCCcccCC
Q 035703 77 GPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPATPLAEVVP 133 (139)
Q Consensus 77 ~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~~~~~~~~~ 133 (139)
..|+||++.++++ ..++ |||+|.++||.+|+..+..||.|+.++.. .+++|
T Consensus 2 ~~Cpi~~~~~~~P---v~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~~--~~l~~ 52 (63)
T smart00504 2 FLCPISLEVMKDP---VILP-SGQTYERRAIEKWLLSHGTDPVTGQPLTH--EDLIP 52 (63)
T ss_pred cCCcCCCCcCCCC---EECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCCh--hhcee
Confidence 4699999998874 4577 99999999999999888899999998852 34444
No 24
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.90 E-value=1.4e-09 Score=66.33 Aligned_cols=29 Identities=38% Similarity=0.929 Sum_probs=27.1
Q ss_pred CCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 97 DCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 97 ~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
.|+|.||..||..||..+..||++|++.+
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred ecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 49999999999999999999999999865
No 25
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.88 E-value=1.4e-09 Score=85.46 Aligned_cols=50 Identities=26% Similarity=0.569 Sum_probs=42.4
Q ss_pred CCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCCC
Q 035703 73 TNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPAT 126 (139)
Q Consensus 73 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~~ 126 (139)
......|+||++.+..+ ..++ |||.||..||..|+.....||+||..+..
T Consensus 23 Le~~l~C~IC~d~~~~P---vitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVP---VLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccccCCCcCchhhhCc---cCCC-CCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 44667899999998764 3567 99999999999999888889999998763
No 26
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=1.2e-09 Score=80.62 Aligned_cols=49 Identities=31% Similarity=0.721 Sum_probs=41.3
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHH-HHhCCCC-CcccCCCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDE-WLRMSAT-CPLCRSSPATP 127 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~-wl~~~~~-CP~CR~~v~~~ 127 (139)
.+..|+||++.... ...++ |||+|+..||.. |-.++.. ||+||+.+.+.
T Consensus 214 ~d~kC~lC~e~~~~---ps~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 214 ADYKCFLCLEEPEV---PSCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred cccceeeeecccCC---ccccc-ccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 57889999998665 45677 999999999999 9877776 99999988754
No 27
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=7.7e-10 Score=66.86 Aligned_cols=51 Identities=31% Similarity=0.744 Sum_probs=36.4
Q ss_pred CCCccccCcccccC--------CC-ceeecCCCCCcccHHHHHHHHhC---CCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYKP--------KD-SVRCIPDCHHCFHADCVDEWLRM---SATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~~--------~~-~~~~lp~C~H~fH~~Ci~~wl~~---~~~CP~CR~~v~ 125 (139)
.++.|-||.-+|.. +| -..++-.|.|.||..||..|+.. +..||+||+...
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 34478888877762 22 22233359999999999999954 347999998754
No 28
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.76 E-value=8.3e-09 Score=58.27 Aligned_cols=42 Identities=29% Similarity=0.860 Sum_probs=32.4
Q ss_pred ccccCcccccCCCceeecCCCC-----CcccHHHHHHHHhCC--CCCcccC
Q 035703 78 PCSICLCDYKPKDSVRCIPDCH-----HCFHADCVDEWLRMS--ATCPLCR 121 (139)
Q Consensus 78 ~C~ICl~~~~~~~~~~~lp~C~-----H~fH~~Ci~~wl~~~--~~CP~CR 121 (139)
.|-||++. .+++.....| |. |.+|..|+..|+..+ .+||+|+
T Consensus 1 ~CrIC~~~-~~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDE-GDEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCC-CCCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 48999993 3345555788 85 899999999999544 4899995
No 29
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.70 E-value=1.5e-08 Score=55.58 Aligned_cols=34 Identities=29% Similarity=0.794 Sum_probs=21.2
Q ss_pred cccCcccccCCC-ceeecCCCCCcccHHHHHHHHhCC
Q 035703 79 CSICLCDYKPKD-SVRCIPDCHHCFHADCVDEWLRMS 114 (139)
Q Consensus 79 C~ICl~~~~~~~-~~~~lp~C~H~fH~~Ci~~wl~~~ 114 (139)
|+||.| +..++ ...+|+ |||+|+++|++.++.++
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcC
Confidence 899999 75544 456788 99999999999999743
No 30
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=2.1e-08 Score=79.99 Aligned_cols=47 Identities=30% Similarity=0.632 Sum_probs=37.2
Q ss_pred CCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCC-----CCCcccCCCCCC
Q 035703 76 YGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMS-----ATCPLCRSSPAT 126 (139)
Q Consensus 76 ~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~-----~~CP~CR~~v~~ 126 (139)
+..|||||++...+ ..+. |||+||..||-+++... ..||+||..|..
T Consensus 186 ~~~CPICL~~~~~p---~~t~-CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP---VRTN-CGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcc---cccc-cCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 67899999986543 2344 99999999999998544 379999998863
No 31
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.60 E-value=5.6e-09 Score=63.36 Aligned_cols=50 Identities=30% Similarity=0.628 Sum_probs=23.1
Q ss_pred CCccccCccccc-CCCce-eec--CCCCCcccHHHHHHHHhC---CC--------CCcccCCCCC
Q 035703 76 YGPCSICLCDYK-PKDSV-RCI--PDCHHCFHADCVDEWLRM---SA--------TCPLCRSSPA 125 (139)
Q Consensus 76 ~~~C~ICl~~~~-~~~~~-~~l--p~C~H~fH~~Ci~~wl~~---~~--------~CP~CR~~v~ 125 (139)
+.+|.||++... .++.. .+- +.|++.||..||.+|+.. .+ +||.|+++|.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 357999999865 33221 122 269999999999999942 11 5999999875
No 32
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=3.5e-08 Score=63.04 Aligned_cols=50 Identities=26% Similarity=0.636 Sum_probs=36.1
Q ss_pred CCCccccCccccc-------------CCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCC
Q 035703 75 DYGPCSICLCDYK-------------PKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSP 124 (139)
Q Consensus 75 ~~~~C~ICl~~~~-------------~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v 124 (139)
..+.|+||..-+- .++-...-..|+|.||..||.+||+.+..||+|.++-
T Consensus 45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 4567999864331 1222222335999999999999999999999998763
No 33
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.56 E-value=5.2e-08 Score=59.56 Aligned_cols=53 Identities=21% Similarity=0.432 Sum_probs=39.4
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhC-CCCCcccCCCCCCCCcccCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRM-SATCPLCRSSPATPLAEVVP 133 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~-~~~CP~CR~~v~~~~~~~~~ 133 (139)
+...|+|+.+-|.+ ...++ +||.|.+.+|..|+.. +..||.+++++... +++|
T Consensus 3 ~~f~CpIt~~lM~d---PVi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~--~l~p 56 (73)
T PF04564_consen 3 DEFLCPITGELMRD---PVILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSES--DLIP 56 (73)
T ss_dssp GGGB-TTTSSB-SS---EEEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG--GSEE
T ss_pred cccCCcCcCcHhhC---ceeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc--cceE
Confidence 45679999999987 45678 9999999999999988 78999999988743 5544
No 34
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.53 E-value=3e-08 Score=78.03 Aligned_cols=48 Identities=29% Similarity=0.892 Sum_probs=38.5
Q ss_pred CCCccccCcccccCCC-ceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYKPKD-SVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~-~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
+...|++|||.|...- .++... |+|.||..|+..| ...+||+||--..
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~-c~Hsfh~~cl~~w--~~~scpvcR~~q~ 222 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTIL-CNHSFHCSCLMKW--WDSSCPVCRYCQS 222 (493)
T ss_pred cCCCcchhHhhcCccccceeeee-cccccchHHHhhc--ccCcChhhhhhcC
Confidence 6678999999998654 334445 9999999999999 4568999997655
No 35
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.53 E-value=8.4e-08 Score=73.03 Aligned_cols=52 Identities=27% Similarity=0.570 Sum_probs=37.4
Q ss_pred CCCccccCccc-ccCCC-ceeecCCCCCcccHHHHHHHH-hCCCCCcccCCCCCCC
Q 035703 75 DYGPCSICLCD-YKPKD-SVRCIPDCHHCFHADCVDEWL-RMSATCPLCRSSPATP 127 (139)
Q Consensus 75 ~~~~C~ICl~~-~~~~~-~~~~lp~C~H~fH~~Ci~~wl-~~~~~CP~CR~~v~~~ 127 (139)
++..||+|..+ +.+++ .+.+.+ |||.||..|++..+ .....||.|+.++.+.
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRKN 56 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccchh
Confidence 34679999985 33333 233335 99999999999966 4445799999988643
No 36
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=1.2e-07 Score=72.88 Aligned_cols=53 Identities=25% Similarity=0.622 Sum_probs=44.1
Q ss_pred CCCCccccCcccccCCCceeecCCCCCc-ccHHHHHHHHhCCCCCcccCCCCCCCCcc
Q 035703 74 NDYGPCSICLCDYKPKDSVRCIPDCHHC-FHADCVDEWLRMSATCPLCRSSPATPLAE 130 (139)
Q Consensus 74 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~-fH~~Ci~~wl~~~~~CP~CR~~v~~~~~~ 130 (139)
+...+|.|||.+.++ ..+|| |.|. .|..|-+..--+.+.||+||+++...++.
T Consensus 288 ~~gkeCVIClse~rd---t~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i 341 (349)
T KOG4265|consen 288 ESGKECVICLSESRD---TVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEI 341 (349)
T ss_pred cCCCeeEEEecCCcc---eEEec-chhhehhHhHHHHHHHhhcCCCccccchHhhhee
Confidence 346789999998664 67899 9999 99999998876778899999999866554
No 37
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.45 E-value=6.6e-08 Score=73.88 Aligned_cols=47 Identities=28% Similarity=0.694 Sum_probs=41.3
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
.-..|-||.|.|.. ...+| |+|.||.-||+.+|..+..||.|+.++.
T Consensus 22 ~lLRC~IC~eyf~i---p~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~ 68 (442)
T KOG0287|consen 22 DLLRCGICFEYFNI---PMITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVT 68 (442)
T ss_pred HHHHHhHHHHHhcC---ceecc-ccchHHHHHHHHHhccCCCCCceecccc
Confidence 44569999999987 34577 9999999999999999999999998876
No 38
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1e-07 Score=73.98 Aligned_cols=47 Identities=28% Similarity=0.805 Sum_probs=35.3
Q ss_pred CccccCcccccCCCceeecCCCCCcccHHHHHHHHhC---CCCCcccCCC
Q 035703 77 GPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRM---SATCPLCRSS 123 (139)
Q Consensus 77 ~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~---~~~CP~CR~~ 123 (139)
..|.||.+-+...+.+.-...|||+||..|+.+|+.. ++.||.||-.
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik 54 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIK 54 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeec
Confidence 4699995555454555555569999999999999963 3589999833
No 39
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=1.9e-07 Score=67.81 Aligned_cols=61 Identities=28% Similarity=0.590 Sum_probs=50.7
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHh--------CCCCCcccCCCCCCCCcccCCCccc
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLR--------MSATCPLCRSSPATPLAEVVPLASH 137 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~--------~~~~CP~CR~~v~~~~~~~~~~~~~ 137 (139)
.+..|..|-..+..+|.++ |- |-|+||++|+++|-. ...+||-|..+|.++....-|.++.
T Consensus 49 Y~pNC~LC~t~La~gdt~R-Lv-CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~NlvsPva~a 117 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTTR-LV-CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINLVSPVAEA 117 (299)
T ss_pred CCCCCceeCCccccCccee-eh-hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCccccchhHHH
Confidence 4445999999999999887 44 999999999999963 2448999999999998888777654
No 40
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=2e-07 Score=69.56 Aligned_cols=45 Identities=29% Similarity=0.737 Sum_probs=38.7
Q ss_pred CCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCC
Q 035703 74 NDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRS 122 (139)
Q Consensus 74 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~ 122 (139)
.+...|+||++.|..+ ..++ |||.|+..|+..++.....||.||.
T Consensus 11 ~~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccCC
Confidence 3667899999999986 5688 9999999999999875568999993
No 41
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1e-07 Score=54.11 Aligned_cols=45 Identities=27% Similarity=0.591 Sum_probs=33.7
Q ss_pred CccccCcccccCCCceeecCCCCCc-ccHHH-HHHHHhCCCCCcccCCCCC
Q 035703 77 GPCSICLCDYKPKDSVRCIPDCHHC-FHADC-VDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 77 ~~C~ICl~~~~~~~~~~~lp~C~H~-fH~~C-i~~wl~~~~~CP~CR~~v~ 125 (139)
++|.||+|.-.+ .+ ... |||. .+.+| ++.|-..+..||+||+++.
T Consensus 8 dECTICye~pvd--sV-lYt-CGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVD--SV-LYT-CGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcch--HH-HHH-cchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 689999887443 22 233 9998 88899 4556557789999999864
No 42
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.30 E-value=4e-07 Score=68.41 Aligned_cols=47 Identities=30% Similarity=0.698 Sum_probs=39.8
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
.-..|-||-+.+..+ ..++ |||.||.-||...|..+..||+||.+..
T Consensus 24 s~lrC~IC~~~i~ip---~~Tt-CgHtFCslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 24 SMLRCRICDCRISIP---CETT-CGHTFCSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred hHHHhhhhhheeecc---eecc-cccchhHHHHHHHhcCCCCCccccccHH
Confidence 345699999998863 3455 9999999999999999999999998754
No 43
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.26 E-value=3.3e-07 Score=77.92 Aligned_cols=53 Identities=26% Similarity=0.688 Sum_probs=37.6
Q ss_pred CCCCCccccCccccc-CCC--ceeecCCCCCcccHHHHHHHHhC--CCCCcccCCCCC
Q 035703 73 TNDYGPCSICLCDYK-PKD--SVRCIPDCHHCFHADCVDEWLRM--SATCPLCRSSPA 125 (139)
Q Consensus 73 ~~~~~~C~ICl~~~~-~~~--~~~~lp~C~H~fH~~Ci~~wl~~--~~~CP~CR~~v~ 125 (139)
..+.++|+||...+. .+. .-...+.|.|.||..|+..|+.. +.+||+||..+.
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 347788999987654 111 11123358999999999999964 458999997764
No 44
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.17 E-value=3.3e-07 Score=76.57 Aligned_cols=49 Identities=27% Similarity=0.515 Sum_probs=39.7
Q ss_pred CCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 76 YGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 76 ~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
...|++|+..+.+.......+ |+|.||..||..|-...++||+||..+.
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~ 171 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFG 171 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhh
Confidence 345888887776655444455 9999999999999999999999999865
No 45
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=1.5e-06 Score=68.02 Aligned_cols=51 Identities=29% Similarity=0.746 Sum_probs=39.0
Q ss_pred CCCccccCcccccCC-CceeecCCCCCcccHHHHHHHHhC--CCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYKPK-DSVRCIPDCHHCFHADCVDEWLRM--SATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~-~~~~~lp~C~H~fH~~Ci~~wl~~--~~~CP~CR~~v~ 125 (139)
.+..|+|||+.+.-. +...+.+.|||.|-.+||+.|+.+ ...||.|...-.
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~kat 56 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKAT 56 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhH
Confidence 456899999998754 444445569999999999999953 237999977544
No 46
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.15 E-value=3.7e-07 Score=53.76 Aligned_cols=45 Identities=31% Similarity=0.827 Sum_probs=23.1
Q ss_pred CCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 76 YGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 76 ~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
...|++|.+-++++ + .+..|.|+|+..||..-+. ..||+|+.+.-
T Consensus 7 lLrCs~C~~~l~~p--v-~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw 51 (65)
T PF14835_consen 7 LLRCSICFDILKEP--V-CLGGCEHIFCSSCIRDCIG--SECPVCHTPAW 51 (65)
T ss_dssp TTS-SSS-S--SS---B----SSS--B-TTTGGGGTT--TB-SSS--B-S
T ss_pred hcCCcHHHHHhcCC--c-eeccCccHHHHHHhHHhcC--CCCCCcCChHH
Confidence 34699999998864 3 3445999999999988654 35999998763
No 47
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=2.2e-06 Score=66.44 Aligned_cols=51 Identities=29% Similarity=0.847 Sum_probs=39.1
Q ss_pred CCCccccCcccccCCC----ceeecCCCCCcccHHHHHHHH--hC-----CCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYKPKD----SVRCIPDCHHCFHADCVDEWL--RM-----SATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~----~~~~lp~C~H~fH~~Ci~~wl--~~-----~~~CP~CR~~v~ 125 (139)
.+..|.||+|..-... ....+|+|.|.|+.+||+.|- .+ .+.||.||....
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 5778999999866432 123457799999999999997 33 457999998764
No 48
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=2.3e-06 Score=71.34 Aligned_cols=53 Identities=25% Similarity=0.580 Sum_probs=41.3
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHh-CCCCCcccCCCCCCCCcccCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLR-MSATCPLCRSSPATPLAEVVP 133 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~-~~~~CP~CR~~v~~~~~~~~~ 133 (139)
.-..|+.|-..+.+ ..... |||+||..|+..-+. +.+.||.|.+.+.++ |+-|
T Consensus 642 ~~LkCs~Cn~R~Kd---~vI~k-C~H~FC~~Cvq~r~etRqRKCP~Cn~aFgan--Dv~~ 695 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKD---AVITK-CGHVFCEECVQTRYETRQRKCPKCNAAFGAN--DVHR 695 (698)
T ss_pred hceeCCCccCchhh---HHHHh-cchHHHHHHHHHHHHHhcCCCCCCCCCCCcc--cccc
Confidence 55679999977654 33344 999999999999994 666899999998865 6554
No 49
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=9.7e-07 Score=67.85 Aligned_cols=48 Identities=31% Similarity=0.552 Sum_probs=39.3
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHH-hCCCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWL-RMSATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl-~~~~~CP~CR~~v~ 125 (139)
.+..|+|||+-++.. +..+.|.|.||.+||..-+ ..+..||.||+.+.
T Consensus 42 ~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~ 90 (381)
T KOG0311|consen 42 IQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLV 90 (381)
T ss_pred hhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcc
Confidence 667899999998763 3444699999999998887 45678999999876
No 50
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.90 E-value=4.1e-06 Score=63.26 Aligned_cols=50 Identities=30% Similarity=0.783 Sum_probs=42.1
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhC-----------------------CCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRM-----------------------SATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~-----------------------~~~CP~CR~~v~ 125 (139)
....|+|||--|..++...+++ |.|.||..|+..+|.- +..||+||..+.
T Consensus 114 p~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 4557999999999999888898 9999999999888731 125999999886
No 51
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.89 E-value=4.5e-06 Score=65.12 Aligned_cols=61 Identities=28% Similarity=0.626 Sum_probs=43.4
Q ss_pred CCCccccCcccccC-CCceeecCCCCCcccHHHHHHHHhCC--CCCcccCCCCC----CCCcccCCCcc
Q 035703 75 DYGPCSICLCDYKP-KDSVRCIPDCHHCFHADCVDEWLRMS--ATCPLCRSSPA----TPLAEVVPLAS 136 (139)
Q Consensus 75 ~~~~C~ICl~~~~~-~~~~~~lp~C~H~fH~~Ci~~wl~~~--~~CP~CR~~v~----~~~~~~~~~~~ 136 (139)
-+..|-.|-|.+.. ++.+--+| |.|+||.+|+...+.++ ++||.||+-.. +-.-..||.++
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~CrklrSs~~rpgfvgs~~Ves 431 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRKLRSSMKRPGFVGSVPVES 431 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHHHHhhccCCCCcCCCcccc
Confidence 45569999988764 34566788 99999999999999654 47999994322 33334555444
No 52
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=7.5e-06 Score=61.84 Aligned_cols=49 Identities=22% Similarity=0.408 Sum_probs=38.1
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHH-hCCCCCcccCCCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWL-RMSATCPLCRSSPATP 127 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl-~~~~~CP~CR~~v~~~ 127 (139)
...+|+||+.....+ ..++ |+|.|+..||.--. ....+|++||.++..+
T Consensus 6 ~~~eC~IC~nt~n~P---v~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 6 KKKECLICYNTGNCP---VNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred cCCcceeeeccCCcC---cccc-ccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 456799998885543 4576 99999999997665 4455799999998744
No 53
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.81 E-value=1.2e-05 Score=46.79 Aligned_cols=42 Identities=24% Similarity=0.555 Sum_probs=27.1
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhC--CCCCcc
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRM--SATCPL 119 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~--~~~CP~ 119 (139)
-...|+|.+..|+++ ++-.. |||+|-++.|.+|+.+ ...||.
T Consensus 10 ~~~~CPiT~~~~~~P--V~s~~-C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDP--VKSKK-CGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSE--EEESS-S--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCC--cCcCC-CCCeecHHHHHHHHHhcCCCCCCC
Confidence 456799999998864 54445 9999999999999943 346998
No 54
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.74 E-value=1e-05 Score=63.36 Aligned_cols=45 Identities=31% Similarity=0.818 Sum_probs=36.8
Q ss_pred CccccCcccccCCCceeecCCCCCcccHHHHHHHHh--CCCCCcccCCCCC
Q 035703 77 GPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLR--MSATCPLCRSSPA 125 (139)
Q Consensus 77 ~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~--~~~~CP~CR~~v~ 125 (139)
..|-||-|. +..+..-| |||..|..|+..|-. ..++||.||..+-
T Consensus 370 eLCKICaen---dKdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 370 ELCKICAEN---DKDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred HHHHHhhcc---CCCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence 459999876 34466778 999999999999973 2578999999885
No 55
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.00018 Score=53.90 Aligned_cols=56 Identities=20% Similarity=0.363 Sum_probs=41.0
Q ss_pred cccccCCCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHh--CCCCCcccCCCCC
Q 035703 67 EYENARTNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLR--MSATCPLCRSSPA 125 (139)
Q Consensus 67 ~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~--~~~~CP~CR~~v~ 125 (139)
++.......+.+|++|-+.-..+ ....+ |||+||.-||..=.. ...+||.|-.++.
T Consensus 230 ~~sss~~t~~~~C~~Cg~~PtiP--~~~~~-C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 230 KFSSSTGTSDTECPVCGEPPTIP--HVIGK-CGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CcccccccCCceeeccCCCCCCC--eeecc-ccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 33444555788999998885543 33345 999999999987664 3468999988876
No 56
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=97.70 E-value=2.4e-05 Score=69.54 Aligned_cols=53 Identities=23% Similarity=0.612 Sum_probs=41.9
Q ss_pred CCCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCC----------CCCcccCCCCC
Q 035703 72 RTNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMS----------ATCPLCRSSPA 125 (139)
Q Consensus 72 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~----------~~CP~CR~~v~ 125 (139)
.++.|+.|.||+.+--.....+.|. |+|+||..|.+.-|+++ .+||+|+.++.
T Consensus 3482 kQD~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred hcccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 4457888999987766556677787 99999999997766543 17999999886
No 57
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.57 E-value=4.7e-05 Score=60.42 Aligned_cols=52 Identities=27% Similarity=0.579 Sum_probs=43.0
Q ss_pred CCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCCCC
Q 035703 73 TNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPATP 127 (139)
Q Consensus 73 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~~~ 127 (139)
.+.+..|+||...+.++-.. .. |||.|+..|+..|+..+..||.|+..+...
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~--~~-cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~ 69 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQT--TT-CGHRFCAGCLLESLSNHQKCPVCRQELTQA 69 (391)
T ss_pred CcccccCccccccccCCCCC--CC-CCCcccccccchhhccCcCCcccccccchh
Confidence 45677899999998875332 34 999999999999999889999999987633
No 58
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=97.50 E-value=3.9e-05 Score=51.73 Aligned_cols=36 Identities=28% Similarity=0.511 Sum_probs=30.1
Q ss_pred CCCccccCcccccCCCceeecCCCC------CcccHHHHHHHH
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCH------HCFHADCVDEWL 111 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~------H~fH~~Ci~~wl 111 (139)
...+|.||++.+.+++.++.++ || |.||.+|+..|-
T Consensus 25 ~~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 25 CTVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred cCeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHH
Confidence 4568999999999856666677 76 999999999994
No 59
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=6e-05 Score=59.69 Aligned_cols=49 Identities=31% Similarity=0.696 Sum_probs=41.7
Q ss_pred CCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCCC
Q 035703 74 NDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPAT 126 (139)
Q Consensus 74 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~~ 126 (139)
..+.+|.||+.-+.. ...+| |||.|+..||+.-+..+..||.||..+..
T Consensus 82 ~sef~c~vc~~~l~~---pv~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYP---PVVTP-CGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCC---Ccccc-ccccccHHHHHHHhccCCCCccccccccc
Confidence 467789999887775 44567 99999999999988888899999999874
No 60
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00011 Score=57.69 Aligned_cols=51 Identities=20% Similarity=0.630 Sum_probs=39.7
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhC--------CCCCcccCCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRM--------SATCPLCRSSPAT 126 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~--------~~~CP~CR~~v~~ 126 (139)
....|.||+++....+....+| |+|+|++.|+..++.. ...||-++..=..
T Consensus 183 slf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~~a 241 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGSVA 241 (445)
T ss_pred hcccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCCcccC
Confidence 5678999999987667788899 9999999999999842 2258777655433
No 61
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=97.31 E-value=0.00014 Score=40.53 Aligned_cols=40 Identities=30% Similarity=0.902 Sum_probs=26.6
Q ss_pred cccCcccccCCCceeecCCCC-----CcccHHHHHHHHh--CCCCCccc
Q 035703 79 CSICLCDYKPKDSVRCIPDCH-----HCFHADCVDEWLR--MSATCPLC 120 (139)
Q Consensus 79 C~ICl~~~~~~~~~~~lp~C~-----H~fH~~Ci~~wl~--~~~~CP~C 120 (139)
|-||++.-.+++ ....| |+ -..|.+|+..|+. .+.+|++|
T Consensus 1 CrIC~~~~~~~~-~li~p-C~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISP-CRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-S-SS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecc-cccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 679998876655 33466 65 3689999999995 45578887
No 62
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=97.24 E-value=0.00033 Score=39.09 Aligned_cols=44 Identities=25% Similarity=0.635 Sum_probs=22.2
Q ss_pred cccCcccccCCCceeecC-CCCCcccHHHHHHHHh-CCCCCcccCCC
Q 035703 79 CSICLCDYKPKDSVRCIP-DCHHCFHADCVDEWLR-MSATCPLCRSS 123 (139)
Q Consensus 79 C~ICl~~~~~~~~~~~lp-~C~H~fH~~Ci~~wl~-~~~~CP~CR~~ 123 (139)
|++|.+++...+. ...| .||+.++..|+..-+. .+..||-||++
T Consensus 1 cp~C~e~~d~~d~-~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETDK-DFYPCECGFQICRFCYHDILENEGGRCPGCREP 46 (48)
T ss_dssp -TTTS-B--CCCT-T--SSTTS----HHHHHHHTTSS-SB-TTT--B
T ss_pred CCCcccccccCCC-ccccCcCCCcHHHHHHHHHHhccCCCCCCCCCC
Confidence 7899999854332 2344 4889999999888875 46689999986
No 63
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=97.22 E-value=0.00011 Score=62.24 Aligned_cols=47 Identities=34% Similarity=0.764 Sum_probs=37.1
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCC-------CCCcccC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMS-------ATCPLCR 121 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~-------~~CP~CR 121 (139)
+..+|.||.+.+.....+-.-..|-|+||..||..|-... -.||.|+
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cq 243 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQ 243 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCccc
Confidence 5678999999998776655444588999999999997431 1599997
No 64
>PHA02862 5L protein; Provisional
Probab=97.11 E-value=0.0005 Score=46.91 Aligned_cols=45 Identities=22% Similarity=0.561 Sum_probs=33.3
Q ss_pred CCccccCcccccCCCceeecCCCC-----CcccHHHHHHHHhC--CCCCcccCCCCC
Q 035703 76 YGPCSICLCDYKPKDSVRCIPDCH-----HCFHADCVDEWLRM--SATCPLCRSSPA 125 (139)
Q Consensus 76 ~~~C~ICl~~~~~~~~~~~lp~C~-----H~fH~~Ci~~wl~~--~~~CP~CR~~v~ 125 (139)
++.|=||+++-+ +. ..| |. ..-|.+|+.+|++. +..|+.|+.+..
T Consensus 2 ~diCWIC~~~~~--e~--~~P-C~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 2 SDICWICNDVCD--ER--NNF-CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CCEEEEecCcCC--CC--ccc-ccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 467999999843 22 245 54 57999999999953 447999998764
No 65
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=0.00057 Score=50.58 Aligned_cols=57 Identities=11% Similarity=0.247 Sum_probs=48.5
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCCCCCcccCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPATPLAEVVP 133 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~~~~~~~~~ 133 (139)
....|++|.+.+.+...+.+|..|||++..+|.+..+.....||+|-.++... ++++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdr--diI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDR--DIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCccc--ceEe
Confidence 45679999999998887777766999999999999999999999999888643 5544
No 66
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=97.01 E-value=0.00033 Score=45.27 Aligned_cols=33 Identities=24% Similarity=0.604 Sum_probs=27.4
Q ss_pred CCCCccccCcccccCCCceeecCCCCCcccHHHHH
Q 035703 74 NDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVD 108 (139)
Q Consensus 74 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~ 108 (139)
.++..|++|-..+.. ....+.| |||+||..|+.
T Consensus 76 ~~~~~C~vC~k~l~~-~~f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGN-SVFVVFP-CGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCC-ceEEEeC-CCeEEeccccc
Confidence 366779999999987 5566788 99999999975
No 67
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=97.00 E-value=0.00099 Score=46.20 Aligned_cols=48 Identities=23% Similarity=0.626 Sum_probs=34.2
Q ss_pred CCCCccccCcccccCCCceeecC-CCCC---cccHHHHHHHHhC--CCCCcccCCCCC
Q 035703 74 NDYGPCSICLCDYKPKDSVRCIP-DCHH---CFHADCVDEWLRM--SATCPLCRSSPA 125 (139)
Q Consensus 74 ~~~~~C~ICl~~~~~~~~~~~lp-~C~H---~fH~~Ci~~wl~~--~~~CP~CR~~v~ 125 (139)
..+..|=||.++-. +. ..| .|.. .-|.+|++.|+.. ...|+.|+.+..
T Consensus 6 ~~~~~CRIC~~~~~--~~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 6 LMDKCCWICKDEYD--VV--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCCeeEecCCCCC--Cc--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 46678999998843 22 245 2444 5699999999964 347999998764
No 68
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.00024 Score=49.40 Aligned_cols=30 Identities=37% Similarity=0.864 Sum_probs=27.5
Q ss_pred CCCCccccCcccccCCCceeecCCCCCcccH
Q 035703 74 NDYGPCSICLCDYKPKDSVRCIPDCHHCFHA 104 (139)
Q Consensus 74 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~ 104 (139)
++..+|.||||+++.++.+..|| |=.+||+
T Consensus 175 ddkGECvICLEdL~~GdtIARLP-CLCIYHK 204 (205)
T KOG0801|consen 175 DDKGECVICLEDLEAGDTIARLP-CLCIYHK 204 (205)
T ss_pred ccCCcEEEEhhhccCCCceeccc-eEEEeec
Confidence 36678999999999999999999 9999997
No 69
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.94 E-value=0.00045 Score=56.18 Aligned_cols=50 Identities=26% Similarity=0.571 Sum_probs=38.5
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHh-----CCCCCcccCCCCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLR-----MSATCPLCRSSPATPL 128 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~-----~~~~CP~CR~~v~~~~ 128 (139)
+..+|-+|-++-++ ..... |.|.||+-|+.+++. .+-+||.|...+...+
T Consensus 535 ~~~~C~lc~d~aed---~i~s~-ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl 589 (791)
T KOG1002|consen 535 GEVECGLCHDPAED---YIESS-CHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL 589 (791)
T ss_pred CceeecccCChhhh---hHhhh-hhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence 55679999988544 44565 999999999999874 3458999988877443
No 70
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0055 Score=47.14 Aligned_cols=51 Identities=18% Similarity=0.339 Sum_probs=38.8
Q ss_pred cCCCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCC
Q 035703 71 ARTNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSP 124 (139)
Q Consensus 71 ~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v 124 (139)
....+...|++|+....++- +... -|-+||..|+-+++.+...||+=..+.
T Consensus 295 ~l~~~~~~CpvClk~r~Npt-vl~v--SGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 295 LLPPDREVCPVCLKKRQNPT-VLEV--SGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred cCCCccccChhHHhccCCCc-eEEe--cceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 33447778999999877643 2222 689999999999999999999865543
No 71
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.84 E-value=0.00045 Score=49.59 Aligned_cols=45 Identities=24% Similarity=0.516 Sum_probs=37.2
Q ss_pred CCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCC
Q 035703 76 YGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSP 124 (139)
Q Consensus 76 ~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v 124 (139)
...|.||-.+|+.+ +++. |||.||..|...-++....|-.|.+..
T Consensus 196 PF~C~iCKkdy~sp---vvt~-CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 196 PFLCGICKKDYESP---VVTE-CGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred ceeehhchhhccch---hhhh-cchhHHHHHHHHHhccCCcceecchhh
Confidence 34799999999874 3454 999999999888888888999998764
No 72
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.00076 Score=52.39 Aligned_cols=48 Identities=21% Similarity=0.527 Sum_probs=40.6
Q ss_pred CCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 74 NDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 74 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
.++..|+||... +..-...| |+|.-|..||.+-+-+.+.|=.|+..+.
T Consensus 420 sEd~lCpICyA~---pi~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAG---PINAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred cccccCcceecc---cchhhccC-CCCchHHHHHHHHHhcCCeeeEecceee
Confidence 378889999654 44455788 9999999999999999999999999876
No 73
>PHA03096 p28-like protein; Provisional
Probab=96.83 E-value=0.00064 Score=51.73 Aligned_cols=46 Identities=30% Similarity=0.551 Sum_probs=32.9
Q ss_pred CccccCcccccCC----CceeecCCCCCcccHHHHHHHHhCC---CCCcccCC
Q 035703 77 GPCSICLCDYKPK----DSVRCIPDCHHCFHADCVDEWLRMS---ATCPLCRS 122 (139)
Q Consensus 77 ~~C~ICl~~~~~~----~~~~~lp~C~H~fH~~Ci~~wl~~~---~~CP~CR~ 122 (139)
..|.||++..... ..-..|+.|.|.|+..|+..|-..+ .+||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 6799999987642 2333577899999999999997432 24555544
No 74
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.73 E-value=0.00041 Score=53.17 Aligned_cols=52 Identities=23% Similarity=0.505 Sum_probs=42.3
Q ss_pred CCCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCCC
Q 035703 72 RTNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPAT 126 (139)
Q Consensus 72 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~~ 126 (139)
..+....|.+|-..|.+...+ . .|=|.||+.||...+.....||.|...+..
T Consensus 11 ~~n~~itC~LC~GYliDATTI--~-eCLHTFCkSCivk~l~~~~~CP~C~i~ih~ 62 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDATTI--T-ECLHTFCKSCIVKYLEESKYCPTCDIVIHK 62 (331)
T ss_pred hcccceehhhccceeecchhH--H-HHHHHHHHHHHHHHHHHhccCCccceeccC
Confidence 345667899999988865432 3 499999999999999999999999888763
No 75
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.73 E-value=0.002 Score=48.44 Aligned_cols=59 Identities=19% Similarity=0.445 Sum_probs=43.9
Q ss_pred CCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCCCCCcccCCC
Q 035703 73 TNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPATPLAEVVPL 134 (139)
Q Consensus 73 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~~~~~~~~~~ 134 (139)
......|||...+|........+..|||+|-.++|.+-- ....||+|-.++... +++|.
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~--DiI~L 168 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEE--DIIPL 168 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccC--CEEEe
Confidence 346678999999996555555554499999999999973 356799999988733 55543
No 76
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.69 E-value=0.00083 Score=38.40 Aligned_cols=43 Identities=23% Similarity=0.566 Sum_probs=31.6
Q ss_pred ccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCCC
Q 035703 78 PCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPAT 126 (139)
Q Consensus 78 ~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~~ 126 (139)
.|..|... +..-.++| |||+.+..|+..+ +-+-||.|.+++..
T Consensus 9 ~~~~~~~~---~~~~~~~p-CgH~I~~~~f~~~--rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 9 PCVFCGFV---GTKGTVLP-CGHLICDNCFPGE--RYNGCPFCGTPFEF 51 (55)
T ss_pred eEEEcccc---cccccccc-ccceeeccccChh--hccCCCCCCCcccC
Confidence 45555444 33345688 9999999998876 55679999999874
No 77
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=8.2e-05 Score=58.14 Aligned_cols=50 Identities=30% Similarity=0.618 Sum_probs=42.3
Q ss_pred CCCccccCcccccCC-CceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYKPK-DSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~-~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
....|+||.+.+... +++..+- |||.+|.+|+..|+.....||.|++.+.
T Consensus 195 lv~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~ 245 (465)
T KOG0827|consen 195 LVGSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELP 245 (465)
T ss_pred HHhhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhh
Confidence 445699999998865 5555565 9999999999999998889999999876
No 78
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.59 E-value=0.00079 Score=49.61 Aligned_cols=44 Identities=27% Similarity=0.617 Sum_probs=32.6
Q ss_pred ccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 78 PCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 78 ~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
.|.-|.-.-. ++....+. |+|+||..|...-.. ..||+||+++-
T Consensus 5 hCn~C~~~~~-~~~f~LTa-C~HvfC~~C~k~~~~--~~C~lCkk~ir 48 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTA-CRHVFCEPCLKASSP--DVCPLCKKSIR 48 (233)
T ss_pred EeccccccCC-CCceeeee-chhhhhhhhcccCCc--cccccccceee
Confidence 5777766544 66676665 999999999876322 28999999864
No 79
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.015 Score=45.83 Aligned_cols=54 Identities=13% Similarity=0.328 Sum_probs=42.7
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCC---CCcccCCCCCCCCccc
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSA---TCPLCRSSPATPLAEV 131 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~---~CP~CR~~v~~~~~~~ 131 (139)
....|||=-+.-.+...+..|. |||+..++-+....++.. .||+| |+....++.
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYC--P~e~~~~~~ 389 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYC--PVEQLASDT 389 (394)
T ss_pred ceeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCC--CcccCHHhc
Confidence 6678999988887777788888 999999999999886554 69999 555444443
No 80
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.0015 Score=50.73 Aligned_cols=45 Identities=27% Similarity=0.597 Sum_probs=32.1
Q ss_pred CCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 74 NDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 74 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
...+.|.||+++..+ ...+| |||.=+ |..-- +...+||+||+.+.
T Consensus 303 ~~p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~cs-~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKS---AVFVP-CGHVCC--CTLCS-KHLPQCPVCRQRIR 347 (355)
T ss_pred CCCCceEEecCCccc---eeeec-CCcEEE--chHHH-hhCCCCchhHHHHH
Confidence 356679999999665 56788 999955 54433 23346999999864
No 81
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=96.35 E-value=0.0021 Score=48.56 Aligned_cols=44 Identities=27% Similarity=0.636 Sum_probs=36.6
Q ss_pred ccccCcccccCCC-ceeecCCCCCcccHHHHHHHHhCCCCCcccCC
Q 035703 78 PCSICLCDYKPKD-SVRCIPDCHHCFHADCVDEWLRMSATCPLCRS 122 (139)
Q Consensus 78 ~C~ICl~~~~~~~-~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~ 122 (139)
.|+||.+.+-... .+..++ |||.-|..|+......+.+||+|.+
T Consensus 160 ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 160 NCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc
Confidence 3999998776543 445677 9999999999999977799999988
No 82
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.00056 Score=51.79 Aligned_cols=42 Identities=24% Similarity=0.606 Sum_probs=32.7
Q ss_pred CCccccCcccccCCCceeecCCCCCc-ccHHHHHHHHhCCCCCcccCCCCC
Q 035703 76 YGPCSICLCDYKPKDSVRCIPDCHHC-FHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 76 ~~~C~ICl~~~~~~~~~~~lp~C~H~-fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
+..|.||++... ....|+ |||. -+.+|-... +.||+||+-|.
T Consensus 300 ~~LC~ICmDaP~---DCvfLe-CGHmVtCt~CGkrm----~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPR---DCVFLE-CGHMVTCTKCGKRM----NECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCc---ceEEee-cCcEEeehhhcccc----ccCchHHHHHH
Confidence 677999988844 477898 9997 778886543 37999998764
No 83
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=96.28 E-value=0.0026 Score=34.69 Aligned_cols=41 Identities=27% Similarity=0.687 Sum_probs=22.6
Q ss_pred cccCcccccCCCceeecCCCCCcccHHHHHHHHhCCC--CCccc
Q 035703 79 CSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSA--TCPLC 120 (139)
Q Consensus 79 C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~--~CP~C 120 (139)
|.+|-+-...|...... .|+=.+|..|+..++..+. .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~-~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNR-DCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCC-ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 56777766655443322 3888999999999997655 69987
No 84
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.0018 Score=49.15 Aligned_cols=46 Identities=20% Similarity=0.362 Sum_probs=38.4
Q ss_pred CCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 76 YGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 76 ~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
...|-||...|..+ +++. |+|.|+..|-..=+++...|.+|.+.+.
T Consensus 241 Pf~c~icr~~f~~p---Vvt~-c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 241 PFKCFICRKYFYRP---VVTK-CGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred Cccccccccccccc---hhhc-CCceeehhhhccccccCCcceecccccc
Confidence 34599999999874 3455 9999999998888888889999988765
No 85
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=96.21 E-value=0.0076 Score=34.39 Aligned_cols=35 Identities=26% Similarity=0.687 Sum_probs=30.0
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHH
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDE 109 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~ 109 (139)
....|.+|-+.|..++.+.+-|.||=.+|++|.+.
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 44579999999998888888889999999999653
No 86
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=96.15 E-value=0.0029 Score=35.01 Aligned_cols=31 Identities=29% Similarity=0.725 Sum_probs=22.4
Q ss_pred CC-CcccHHHHHHHHhCCCCCcccCCCCCCCC
Q 035703 98 CH-HCFHADCVDEWLRMSATCPLCRSSPATPL 128 (139)
Q Consensus 98 C~-H~fH~~Ci~~wl~~~~~CP~CR~~v~~~~ 128 (139)
|+ |..+.+|+...+.++..||+|..++.+.+
T Consensus 18 C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtki 49 (50)
T PF03854_consen 18 CSDHYLCLNCLTLMLSRSDRCPICGKPLPTKI 49 (50)
T ss_dssp -SS-EEEHHHHHHT-SSSSEETTTTEE----S
T ss_pred ecchhHHHHHHHHHhccccCCCcccCcCcccc
Confidence 77 99999999999999999999999887643
No 87
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.0042 Score=43.97 Aligned_cols=29 Identities=38% Similarity=0.959 Sum_probs=23.8
Q ss_pred CCCCcccHHHHHHHHhC----CC-------CCcccCCCCC
Q 035703 97 DCHHCFHADCVDEWLRM----SA-------TCPLCRSSPA 125 (139)
Q Consensus 97 ~C~H~fH~~Ci~~wl~~----~~-------~CP~CR~~v~ 125 (139)
.||.-||.-|+..||.. ++ .||+|..++.
T Consensus 189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 49999999999999852 11 6999988875
No 88
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.85 E-value=0.0048 Score=52.75 Aligned_cols=44 Identities=23% Similarity=0.597 Sum_probs=33.0
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSP 124 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v 124 (139)
....|..|-..++-+ .+.-. |||.||.+|+. .+...||.|+.+.
T Consensus 839 q~skCs~C~~~LdlP--~VhF~-CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLP--FVHFL-CGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeeeecccCCccccc--eeeee-cccHHHHHhhc---cCcccCCccchhh
Confidence 335799998887754 22333 99999999999 4667899998743
No 89
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.0077 Score=45.88 Aligned_cols=47 Identities=34% Similarity=0.788 Sum_probs=37.2
Q ss_pred CccccCcccccCCC---ceeecCCCCCcccHHHHHHHHhCC-CCCcccCCCC
Q 035703 77 GPCSICLCDYKPKD---SVRCIPDCHHCFHADCVDEWLRMS-ATCPLCRSSP 124 (139)
Q Consensus 77 ~~C~ICl~~~~~~~---~~~~lp~C~H~fH~~Ci~~wl~~~-~~CP~CR~~v 124 (139)
..|-||-++|...+ ..+.+. |||.++..|+..-+... ..||.||.+.
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~-c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLK-CGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccc-cCceehHhHHHHHhcCceeeccCCCCcc
Confidence 46999999998663 344555 99999999999877544 3699999985
No 90
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.78 E-value=0.0082 Score=45.83 Aligned_cols=43 Identities=28% Similarity=0.686 Sum_probs=34.2
Q ss_pred CccccCcccccCCCceeecCCCCCcccHHHHHHHH-hCCCCCcccCC
Q 035703 77 GPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWL-RMSATCPLCRS 122 (139)
Q Consensus 77 ~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl-~~~~~CP~CR~ 122 (139)
..|+.|-.-+.++- .++.|||.|+.+||..-| .....||.|.+
T Consensus 275 LkCplc~~Llrnp~---kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPM---KTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcc---cCccccchHHHHHHhhhhhhccccCCCccc
Confidence 67999987776643 346699999999998776 56778999976
No 91
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.54 E-value=0.024 Score=44.17 Aligned_cols=47 Identities=30% Similarity=0.615 Sum_probs=35.9
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHH--HhCCCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEW--LRMSATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~w--l~~~~~CP~CR~~v~ 125 (139)
+...|.||-+.+.. ..++| |+|..|--|--.. |.....||.||..-.
T Consensus 60 en~~C~ICA~~~TY---s~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~e 108 (493)
T COG5236 60 ENMNCQICAGSTTY---SARYP-CGHQICHACAVRLRALYMQKGCPLCRTETE 108 (493)
T ss_pred ccceeEEecCCceE---EEecc-CCchHHHHHHHHHHHHHhccCCCccccccc
Confidence 45569999888665 55788 9999998885433 567788999998643
No 92
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.47 E-value=0.0086 Score=50.81 Aligned_cols=39 Identities=33% Similarity=0.818 Sum_probs=27.6
Q ss_pred cccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcc
Q 035703 79 CSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPL 119 (139)
Q Consensus 79 C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~ 119 (139)
|+||--.+.... ..... |+|+.|..|.+.|+..+-.||.
T Consensus 1031 C~~C~l~V~gss-~~Cg~-C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1031 CAICHLAVRGSS-NFCGT-CGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred eeeEeeEeeccc-hhhcc-ccccccHHHHHHHHhcCCcCCC
Confidence 555544433222 22344 9999999999999999889985
No 93
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=95.38 E-value=0.022 Score=39.56 Aligned_cols=37 Identities=22% Similarity=0.547 Sum_probs=22.8
Q ss_pred CCCccccCcccccCCCceeecC--------CCCC-cccHHHHHHHH
Q 035703 75 DYGPCSICLCDYKPKDSVRCIP--------DCHH-CFHADCVDEWL 111 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp--------~C~H-~fH~~Ci~~wl 111 (139)
++..|+||||---+.-.+.... -|+- .-|.+|++++-
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfk 46 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFK 46 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHH
Confidence 3567999998755432221100 1553 36899999986
No 94
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=95.02 E-value=0.037 Score=43.53 Aligned_cols=54 Identities=20% Similarity=0.616 Sum_probs=32.9
Q ss_pred CCCCCCccccCcccccC-------------CCceeecCC-----CCCcccHHHHHHHHhCCC-------------CCccc
Q 035703 72 RTNDYGPCSICLCDYKP-------------KDSVRCIPD-----CHHCFHADCVDEWLRMSA-------------TCPLC 120 (139)
Q Consensus 72 ~~~~~~~C~ICl~~~~~-------------~~~~~~lp~-----C~H~fH~~Ci~~wl~~~~-------------~CP~C 120 (139)
..++.+.|.-|+..-.+ |......+. |.-.+|.+|+.+|+..++ .||+|
T Consensus 267 ~~~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtC 346 (358)
T PF10272_consen 267 SGQELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTC 346 (358)
T ss_pred CccccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCC
Confidence 44577789999875321 100111111 334568999999984332 69999
Q ss_pred CCCCC
Q 035703 121 RSSPA 125 (139)
Q Consensus 121 R~~v~ 125 (139)
|+.+-
T Consensus 347 Ra~FC 351 (358)
T PF10272_consen 347 RAKFC 351 (358)
T ss_pred cccce
Confidence 99863
No 95
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.88 E-value=0.014 Score=50.25 Aligned_cols=35 Identities=31% Similarity=0.700 Sum_probs=28.1
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHH
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWL 111 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl 111 (139)
.++.|.+|...+... .-.+-| |||.||++|+..-.
T Consensus 816 p~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRHV 850 (911)
T ss_pred CccchHHhcchhhcC-cceeee-ccchHHHHHHHHHH
Confidence 677899999888764 444567 99999999997664
No 96
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.68 E-value=0.021 Score=42.65 Aligned_cols=54 Identities=20% Similarity=0.575 Sum_probs=36.3
Q ss_pred cCCCCCCccccCcccccCCCce-eecCCCC-----CcccHHHHHHHHhCCC--------CCcccCCCCC
Q 035703 71 ARTNDYGPCSICLCDYKPKDSV-RCIPDCH-----HCFHADCVDEWLRMSA--------TCPLCRSSPA 125 (139)
Q Consensus 71 ~~~~~~~~C~ICl~~~~~~~~~-~~lp~C~-----H~fH~~Ci~~wl~~~~--------~CP~CR~~v~ 125 (139)
...+.+..|=||+.-=+++..- -+-| |. |.-|..|+..|+..++ +||-|+.+-.
T Consensus 15 ~~~e~eR~CWiCF~TdeDn~~a~WV~P-CrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 15 DNQELERCCWICFATDEDNRLAAWVHP-CRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred CccccceeEEEEeccCcccchhhhccc-ccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 3445677899998764433211 2345 53 8999999999994322 5999998654
No 97
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=94.33 E-value=0.036 Score=43.15 Aligned_cols=50 Identities=20% Similarity=0.461 Sum_probs=34.3
Q ss_pred CCCccccCcccccCCCcee-ecCCCCCcccHHHHHHHHh-CCCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVR-CIPDCHHCFHADCVDEWLR-MSATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~-~lp~C~H~fH~~Ci~~wl~-~~~~CP~CR~~v~ 125 (139)
+++.|+.|+|++...|+-. -.| ||-..|.-|...--+ -+..||-||+.-.
T Consensus 13 eed~cplcie~mditdknf~pc~-cgy~ic~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCP-CGYQICQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred ccccCcccccccccccCCcccCC-cccHHHHHHHHHHHhhccCCChHhhhhcc
Confidence 4556999999998766443 245 887777777554322 2347999998754
No 98
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.00 E-value=0.022 Score=48.36 Aligned_cols=44 Identities=34% Similarity=0.690 Sum_probs=34.4
Q ss_pred CccccCcccccCCCceeecCCCCCcccHHHHHHHHhC--CCCCcccCCCCC
Q 035703 77 GPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRM--SATCPLCRSSPA 125 (139)
Q Consensus 77 ~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~--~~~CP~CR~~v~ 125 (139)
..|.||++ .+.....+ |+|.|+.+|+..-+.. ...||.||..+.
T Consensus 455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence 78999999 23455566 9999999999888743 236999998765
No 99
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=93.82 E-value=0.019 Score=51.23 Aligned_cols=47 Identities=30% Similarity=0.658 Sum_probs=37.9
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSP 124 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v 124 (139)
....|.||++.+.+-..+ . .|||.++..|...|+..+..||.|+...
T Consensus 1152 ~~~~c~ic~dil~~~~~I--~-~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGI--A-GCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred cccchHHHHHHHHhcCCe--e-eechhHhhhHHHHHHHHhccCcchhhhh
Confidence 555899999998842222 2 2999999999999999999999998543
No 100
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=93.76 E-value=0.063 Score=40.93 Aligned_cols=50 Identities=24% Similarity=0.620 Sum_probs=36.3
Q ss_pred CCCccccCcccccCCCc-eeecCCCC-----CcccHHHHHHHHh--CCCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYKPKDS-VRCIPDCH-----HCFHADCVDEWLR--MSATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~-~~~lp~C~-----H~fH~~Ci~~wl~--~~~~CP~CR~~v~ 125 (139)
++..|-||.++...... ....| |. +..|..|++.|+. .+..|..|.....
T Consensus 77 ~~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 77 SGPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred CCCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 34789999997664331 33455 55 6689999999996 5567999987654
No 101
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.70 E-value=0.024 Score=47.46 Aligned_cols=46 Identities=24% Similarity=0.469 Sum_probs=32.4
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSS 123 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~ 123 (139)
+-..|.||+..|......-+.+.|||..|+.|+..-. +.+|| |+.+
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp-~~~D 55 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP-TKRD 55 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC-CCcc
Confidence 3456999988876544333333599999999998764 45788 6554
No 102
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.64 E-value=0.032 Score=40.68 Aligned_cols=39 Identities=31% Similarity=0.755 Sum_probs=29.7
Q ss_pred cccCcccccCCCceeecCCCCCc-ccHHHHHHHHhCCCCCcccCCCCC
Q 035703 79 CSICLCDYKPKDSVRCIPDCHHC-FHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 79 C~ICl~~~~~~~~~~~lp~C~H~-fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
|-.|-+. +..+..+| |.|. +|..|=.. -..||+|+.+..
T Consensus 161 Cr~C~~~---~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLP-CRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcC---CceEEeec-ccceEeccccccc----CccCCCCcChhh
Confidence 8888665 55688899 9988 88899543 346999988754
No 103
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=93.59 E-value=0.1 Score=32.63 Aligned_cols=25 Identities=16% Similarity=0.093 Sum_probs=11.2
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHH
Q 035703 17 TTGVGLGYGIAIAVSILVLISTIML 41 (139)
Q Consensus 17 ~~~~~~~~~i~i~l~~~~~i~~~~~ 41 (139)
+++-|-+.+|.+++..++++.++++
T Consensus 26 ~~n~~~~Lgm~~lvI~~iFil~Vil 50 (94)
T PF05393_consen 26 FVNNWPNLGMWFLVICGIFILLVIL 50 (94)
T ss_pred ecCCCCccchhHHHHHHHHHHHHHH
Confidence 4555555555444444333333333
No 104
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=93.47 E-value=0.03 Score=42.98 Aligned_cols=45 Identities=29% Similarity=0.606 Sum_probs=30.3
Q ss_pred CCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 76 YGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 76 ~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
.-.|--|--.+. .--+..| |.|+||.+|-.. ...+.||.|-..|.
T Consensus 90 VHfCd~Cd~PI~--IYGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 90 VHFCDRCDFPIA--IYGRMIP-CKHVFCLECARS--DSDKICPLCDDRVQ 134 (389)
T ss_pred eEeecccCCcce--eeecccc-cchhhhhhhhhc--CccccCcCcccHHH
Confidence 445766744433 2234567 999999999764 34568999977664
No 105
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=93.18 E-value=0.031 Score=46.42 Aligned_cols=45 Identities=24% Similarity=0.628 Sum_probs=28.6
Q ss_pred CCCCccccCcc-----cccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCC
Q 035703 74 NDYGPCSICLC-----DYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRS 122 (139)
Q Consensus 74 ~~~~~C~ICl~-----~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~ 122 (139)
..+..|.+|-. .|+ .+.++.-..|+++||++|+.. ++..||.|-+
T Consensus 509 ~~gfiCe~Cq~~~iiyPF~-~~~~~rC~~C~avfH~~C~~r---~s~~CPrC~R 558 (580)
T KOG1829|consen 509 GKGFICELCQHNDIIYPFE-TRNTRRCSTCLAVFHKKCLRR---KSPCCPRCER 558 (580)
T ss_pred cCeeeeeeccCCCcccccc-cccceeHHHHHHHHHHHHHhc---cCCCCCchHH
Confidence 36677888821 222 223333335999999999764 4556999943
No 106
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=92.84 E-value=0.094 Score=40.36 Aligned_cols=43 Identities=28% Similarity=0.673 Sum_probs=33.6
Q ss_pred CCCccccCcccccCCCceeecCCC--CCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDC--HHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C--~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
+-.+||||.+.+..+. .. | ||..+..|-.+ ....||.||.++.
T Consensus 47 ~lleCPvC~~~l~~Pi----~Q-C~nGHlaCssC~~~---~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPPI----FQ-CDNGHLACSSCRTK---VSNKCPTCRLPIG 91 (299)
T ss_pred hhccCchhhccCcccc----ee-cCCCcEehhhhhhh---hcccCCccccccc
Confidence 5677999999988753 22 6 59999999653 5667999999987
No 107
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=92.75 E-value=0.12 Score=44.49 Aligned_cols=49 Identities=27% Similarity=0.737 Sum_probs=36.2
Q ss_pred CCCccccCcccccCCCceeecCCCC-----CcccHHHHHHHHhC--CCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCH-----HCFHADCVDEWLRM--SATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~-----H~fH~~Ci~~wl~~--~~~CP~CR~~v~ 125 (139)
++..|-||..+=..++.+ .-| |. -..|.+|+.+|+.- ...|-.|+.+..
T Consensus 11 d~~~CRICr~e~~~d~pL-fhP-CKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPL-FHP-CKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred cchhceeecCCCCCCCcC-ccc-ccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 567899998775544443 456 55 44899999999964 346999998875
No 108
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.63 E-value=0.051 Score=43.23 Aligned_cols=38 Identities=29% Similarity=0.685 Sum_probs=27.8
Q ss_pred CCCccccCc-ccccCCCceeecCCCCCcccHHHHHHHHhC
Q 035703 75 DYGPCSICL-CDYKPKDSVRCIPDCHHCFHADCVDEWLRM 113 (139)
Q Consensus 75 ~~~~C~ICl-~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~ 113 (139)
....|.||. +.....+..... .|+|.|+.+|+.+.+..
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~-~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVL-KCGHRFCKDCVKQHIEV 183 (384)
T ss_pred ccccCccCccccccHhhhHHHh-cccchhhhHHhHHHhhh
Confidence 466899999 444443444434 49999999999999863
No 109
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=92.50 E-value=0.4 Score=32.99 Aligned_cols=34 Identities=29% Similarity=0.322 Sum_probs=20.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 035703 21 GLGYGIAIAVSILVLISTIMLASYACIRVKANAN 54 (139)
Q Consensus 21 ~~~~~i~i~l~~~~~i~~~~~~~~~~~r~~~~~~ 54 (139)
.......|+++|+++++++++..+++.++++++.
T Consensus 27 fsthm~tILiaIvVliiiiivli~lcssRKkKaa 60 (189)
T PF05568_consen 27 FSTHMYTILIAIVVLIIIIIVLIYLCSSRKKKAA 60 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 3344556666777777666666666666655543
No 110
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=91.86 E-value=0.16 Score=38.62 Aligned_cols=47 Identities=28% Similarity=0.559 Sum_probs=33.5
Q ss_pred ccccCcc-cccCCCce-eecCCCCCcccHHHHHHHHhC-CCCCcccCCCCC
Q 035703 78 PCSICLC-DYKPKDSV-RCIPDCHHCFHADCVDEWLRM-SATCPLCRSSPA 125 (139)
Q Consensus 78 ~C~ICl~-~~~~~~~~-~~lp~C~H~fH~~Ci~~wl~~-~~~CP~CR~~v~ 125 (139)
.|++|-. .+.+++.. .+-+ |+|..|.+|++.-+.. ...||.|-..+-
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~-C~H~lCEsCvd~iF~~g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINE-CGHRLCESCVDRIFSLGPAQCPECMVILR 51 (300)
T ss_pred CCcccccceecCccceeeecc-ccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence 4888865 34444433 3345 9999999999999854 458999976554
No 111
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=91.71 E-value=0.16 Score=36.91 Aligned_cols=42 Identities=31% Similarity=0.761 Sum_probs=29.8
Q ss_pred CCCccccCccc-----ccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCC
Q 035703 75 DYGPCSICLCD-----YKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRS 122 (139)
Q Consensus 75 ~~~~C~ICl~~-----~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~ 122 (139)
.+..|-+|-++ |+. +.+..-+.|+-+||.+|+. +..||.|.+
T Consensus 151 kGfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~-----~~~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFR-----KKSCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence 56788888642 233 3455566799999999977 267999954
No 112
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.61 E-value=0.1 Score=39.92 Aligned_cols=28 Identities=29% Similarity=0.679 Sum_probs=21.7
Q ss_pred CCCcccHHHHHHHHhC-------------CCCCcccCCCCC
Q 035703 98 CHHCFHADCVDEWLRM-------------SATCPLCRSSPA 125 (139)
Q Consensus 98 C~H~fH~~Ci~~wl~~-------------~~~CP~CR~~v~ 125 (139)
|.-.+|.+|+.+|+.. +-+||+||+.+-
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 5567889999999843 237999999764
No 113
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=90.98 E-value=0.28 Score=27.46 Aligned_cols=42 Identities=21% Similarity=0.521 Sum_probs=17.9
Q ss_pred ccccCcccccCCCceeecCCCCCcccHHHHHHHHh---CC--CCCcccCCC
Q 035703 78 PCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLR---MS--ATCPLCRSS 123 (139)
Q Consensus 78 ~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~---~~--~~CP~CR~~ 123 (139)
.|+|....++.+ ++-.. |.|.-+- =++.|+. +. -.||.|.++
T Consensus 4 ~CPls~~~i~~P--~Rg~~-C~H~~CF-Dl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIRIP--VRGKN-CKHLQCF-DLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-SSE--EEETT---SS--E-EHHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEEeC--ccCCc-CcccceE-CHHHHHHHhhccCCeECcCCcCc
Confidence 588888887753 55454 9998321 1233442 22 269999864
No 114
>PF15102 TMEM154: TMEM154 protein family
Probab=90.80 E-value=0.2 Score=34.47 Aligned_cols=11 Identities=18% Similarity=0.770 Sum_probs=7.7
Q ss_pred ccHHHHHHHHh
Q 035703 102 FHADCVDEWLR 112 (139)
Q Consensus 102 fH~~Ci~~wl~ 112 (139)
.--+=+++|..
T Consensus 125 iEmeeldkwm~ 135 (146)
T PF15102_consen 125 IEMEELDKWMN 135 (146)
T ss_pred hhHHHHHhHHH
Confidence 55567888874
No 115
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=90.77 E-value=0.11 Score=38.72 Aligned_cols=48 Identities=29% Similarity=0.706 Sum_probs=35.4
Q ss_pred CCCccccCccc-ccCCC-ceeecCCCCCcccHHHHHHHHhCCC-CCc--ccCC
Q 035703 75 DYGPCSICLCD-YKPKD-SVRCIPDCHHCFHADCVDEWLRMSA-TCP--LCRS 122 (139)
Q Consensus 75 ~~~~C~ICl~~-~~~~~-~~~~lp~C~H~fH~~Ci~~wl~~~~-~CP--~CR~ 122 (139)
.+..||||-.+ +-+++ ++.+.|.|-|..|..|++.-+.... +|| -|-+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 56689999764 33444 4445677999999999999986554 799 6744
No 116
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=90.55 E-value=1.1 Score=34.78 Aligned_cols=45 Identities=13% Similarity=0.336 Sum_probs=34.2
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCC---CCccc
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSA---TCPLC 120 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~---~CP~C 120 (139)
.-..||+--+.-.+......+. |||+.-++-++..-++.. .||+|
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~-CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLE-CGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred ceeeccccHhhhcccCCCeeee-ccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 5667998766655555566676 999999999998765543 59999
No 117
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=89.96 E-value=0.65 Score=31.09 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=12.5
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHhhhhhh
Q 035703 25 GIAIAVSILVL-ISTIMLASYACIRVKAN 52 (139)
Q Consensus 25 ~i~i~l~~~~~-i~~~~~~~~~~~r~~~~ 52 (139)
..+|++++++. ++++++++|+++|++++
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444444444 34444555555555444
No 118
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=88.97 E-value=0.41 Score=32.16 Aligned_cols=16 Identities=6% Similarity=0.004 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHhhhhh
Q 035703 36 ISTIMLASYACIRVKA 51 (139)
Q Consensus 36 i~~~~~~~~~~~r~~~ 51 (139)
+++++++....+|+++
T Consensus 14 l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 14 LFLFLFYCHNRRRRRR 29 (130)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 3333444445555444
No 119
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=88.68 E-value=0.44 Score=40.83 Aligned_cols=41 Identities=20% Similarity=0.450 Sum_probs=31.1
Q ss_pred CccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcc
Q 035703 77 GPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPL 119 (139)
Q Consensus 77 ~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~ 119 (139)
..|.+|-..+.. ..+ .-+.|||.-|.+|+.+|+....-||.
T Consensus 780 ~~CtVC~~vi~G-~~~-~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIRG-VDV-WCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceeee-eEe-ecccccccccHHHHHHHHhcCCCCcc
Confidence 358888776653 222 34469999999999999998887876
No 120
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.41 E-value=0.44 Score=35.75 Aligned_cols=49 Identities=14% Similarity=0.274 Sum_probs=37.6
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
....|+|---+|........+..|||+|-..-+.+. ...+|++|.+...
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~ 158 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQ 158 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCccc
Confidence 445699987777755544455569999999998885 5678999998876
No 121
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=87.76 E-value=0.53 Score=31.90 Aligned_cols=52 Identities=17% Similarity=0.422 Sum_probs=34.6
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHh---CCCCCcccCCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLR---MSATCPLCRSSPAT 126 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~---~~~~CP~CR~~v~~ 126 (139)
.-.+|.||.|.-.+..-+.--.-||-..+.-|....++ ....||.|+..+-.
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 55679999987554322211125998899988655443 45589999988753
No 122
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=87.22 E-value=0.47 Score=36.17 Aligned_cols=30 Identities=30% Similarity=0.467 Sum_probs=13.2
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 035703 15 TTTTGVGLGYGIAIAVSILVLISTIMLASYAC 46 (139)
Q Consensus 15 ~~~~~~~~~~~i~i~l~~~~~i~~~~~~~~~~ 46 (139)
..+......++|+.++.+++. ++++++|.+
T Consensus 252 taA~aaF~Pcgiaalvllil~--vvliiLYiW 281 (295)
T TIGR01478 252 SAATSTFLPYGIAALVLIILT--VVLIILYIW 281 (295)
T ss_pred HHHHHhhcccHHHHHHHHHHH--HHHHHHHHH
Confidence 344444555555544443333 333344433
No 124
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.07 E-value=0.39 Score=39.90 Aligned_cols=44 Identities=36% Similarity=0.896 Sum_probs=36.2
Q ss_pred CCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 74 NDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 74 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
...+.|.||++++ ..+..+ |. |..|+..|+..+..||+|+..+.
T Consensus 477 ~~~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~ 520 (543)
T KOG0802|consen 477 EPNDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMK 520 (543)
T ss_pred cccCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhh
Confidence 3667899999998 234455 87 99999999999999999988765
No 125
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.77 E-value=0.47 Score=38.42 Aligned_cols=39 Identities=23% Similarity=0.546 Sum_probs=30.6
Q ss_pred CCCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhC
Q 035703 72 RTNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRM 113 (139)
Q Consensus 72 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~ 113 (139)
.......|-||.+.+.. ....+. |||.|+..|+..++.+
T Consensus 66 ~~~~~~~c~ic~~~~~~--~~~~~~-c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 66 KKKGDVQCGICVESYDG--EIIGLG-CGHPFCPPCWTGYLGT 104 (444)
T ss_pred CCCccccCCcccCCCcc--hhhhcC-CCcHHHHHHHHHHhhh
Confidence 34566789999999775 344455 9999999999999854
No 126
>PTZ00370 STEVOR; Provisional
Probab=86.62 E-value=0.48 Score=36.13 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=8.9
Q ss_pred CccccchhhHHHHHHHHHH
Q 035703 15 TTTTGVGLGYGIAIAVSIL 33 (139)
Q Consensus 15 ~~~~~~~~~~~i~i~l~~~ 33 (139)
..+.+....+||+.++.++
T Consensus 248 taAsaaF~Pygiaalvlli 266 (296)
T PTZ00370 248 SAASSAFYPYGIAALVLLI 266 (296)
T ss_pred HHHHHhhcccHHHHHHHHH
Confidence 3444445555555444433
No 127
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=85.70 E-value=0.53 Score=23.92 Aligned_cols=37 Identities=19% Similarity=0.467 Sum_probs=24.8
Q ss_pred cccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 79 CSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 79 C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
|..|-+.+..++... .. =+..||.+|+ .|..|+.++.
T Consensus 2 C~~C~~~i~~~~~~~-~~-~~~~~H~~Cf--------~C~~C~~~L~ 38 (39)
T smart00132 2 CAGCGKPIRGGELVL-RA-LGKVWHPECF--------KCSKCGKPLG 38 (39)
T ss_pred ccccCCcccCCcEEE-Ee-CCccccccCC--------CCcccCCcCc
Confidence 778888877653332 22 4678999884 4888877653
No 128
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.54 E-value=0.3 Score=41.90 Aligned_cols=44 Identities=30% Similarity=0.509 Sum_probs=31.1
Q ss_pred CCCccccCcccccCC----CceeecCCCCCcccHHHHHHHHhCCCCCccc
Q 035703 75 DYGPCSICLCDYKPK----DSVRCIPDCHHCFHADCVDEWLRMSATCPLC 120 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~----~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~C 120 (139)
.+..|.-|++..-.. +.+.+.. |||.||+.|+..-..++. |-.|
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~~-c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVFH-CGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEEE-ccchhhhcccccHHHhcc-cChh
Confidence 445799998876522 3566676 999999999987765554 4443
No 129
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=85.44 E-value=0.43 Score=38.57 Aligned_cols=33 Identities=24% Similarity=0.585 Sum_probs=26.8
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHH
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWL 111 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl 111 (139)
+...|+||..-|++ .+.+| |+|..|..|-..-+
T Consensus 3 eelkc~vc~~f~~e---piil~-c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 3 EELKCPVCGSFYRE---PIILP-CSHNLCQACARNIL 35 (699)
T ss_pred ccccCceehhhccC---ceEee-cccHHHHHHHHhhc
Confidence 45679999998886 45688 99999999987654
No 130
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=85.21 E-value=0.41 Score=26.41 Aligned_cols=43 Identities=26% Similarity=0.580 Sum_probs=27.9
Q ss_pred ccccCcccccCCCceeecCCCCCcccHHHHHHHHh------CCCCCcccC
Q 035703 78 PCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLR------MSATCPLCR 121 (139)
Q Consensus 78 ~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~------~~~~CP~CR 121 (139)
.|.||.+.-..++.+ .-..|+..||..|+..=.. ..-.||.|+
T Consensus 1 ~C~vC~~~~~~~~~i-~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMI-QCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEE-EBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeE-EcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 388998854444444 4445999999999754332 234688775
No 131
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=84.94 E-value=0.22 Score=42.19 Aligned_cols=47 Identities=28% Similarity=0.634 Sum_probs=36.0
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhC---CCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRM---SATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~---~~~CP~CR~~v~ 125 (139)
...+|+||++.+.++ ..+. |.|.|...|+..-+.. ...||+|+..+.
T Consensus 20 k~lEc~ic~~~~~~p---~~~k-c~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 20 KILECPICLEHVKEP---SLLK-CDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred hhccCCceeEEeecc---chhh-hhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 456799999988875 3344 9999999998766533 447999997765
No 132
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=84.74 E-value=3 Score=21.96 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhhhhhh
Q 035703 37 STIMLASYACIRVKAN 52 (139)
Q Consensus 37 ~~~~~~~~~~~r~~~~ 52 (139)
+.+.++.|.+.++|.+
T Consensus 19 iii~~~~YaCcykk~~ 34 (38)
T PF02439_consen 19 IIICMFYYACCYKKHR 34 (38)
T ss_pred HHHHHHHHHHHHcccc
Confidence 3344444555544443
No 133
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=84.50 E-value=1.6 Score=33.65 Aligned_cols=30 Identities=23% Similarity=0.402 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 035703 22 LGYGIAIAVSILVLISTIMLASYACIRVKA 51 (139)
Q Consensus 22 ~~~~i~i~l~~~~~i~~~~~~~~~~~r~~~ 51 (139)
+...+...+..+++|.+++++.|+..|.|+
T Consensus 254 ~~t~I~aSiiaIliIVLIMvIIYLILRYRR 283 (299)
T PF02009_consen 254 LTTAIIASIIAILIIVLIMVIIYLILRYRR 283 (299)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445555555565555444
No 134
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=84.22 E-value=0.65 Score=35.07 Aligned_cols=49 Identities=29% Similarity=0.571 Sum_probs=35.4
Q ss_pred CccccCcccccCCCceee---cCCCCCcccHHHHHHHHh-C--------CCCCcccCCCCC
Q 035703 77 GPCSICLCDYKPKDSVRC---IPDCHHCFHADCVDEWLR-M--------SATCPLCRSSPA 125 (139)
Q Consensus 77 ~~C~ICl~~~~~~~~~~~---lp~C~H~fH~~Ci~~wl~-~--------~~~CP~CR~~v~ 125 (139)
.+|-+|.+++.+.+..+. -+.|+-++|..|+..-+. . ...||.|++-+.
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~ 243 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLS 243 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceee
Confidence 589999999965554443 236888999999988542 1 237999988543
No 135
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=84.06 E-value=1 Score=39.08 Aligned_cols=51 Identities=8% Similarity=0.198 Sum_probs=35.1
Q ss_pred CCCccccCcccccCCC---ceeecCCCCCcccHHHHHHHHhC------CCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYKPKD---SVRCIPDCHHCFHADCVDEWLRM------SATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~---~~~~lp~C~H~fH~~Ci~~wl~~------~~~CP~CR~~v~ 125 (139)
+.+.|.+|.-++..++ ....+.+|+|.||..||..|..+ .-.|+.|..-|.
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 5567888877777622 22223359999999999999843 236888877654
No 136
>PF15050 SCIMP: SCIMP protein
Probab=84.02 E-value=1.9 Score=28.73 Aligned_cols=8 Identities=13% Similarity=0.019 Sum_probs=3.2
Q ss_pred chhhHHHH
Q 035703 20 VGLGYGIA 27 (139)
Q Consensus 20 ~~~~~~i~ 27 (139)
+|+...++
T Consensus 8 FWiiLAVa 15 (133)
T PF15050_consen 8 FWIILAVA 15 (133)
T ss_pred hHHHHHHH
Confidence 34433333
No 137
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=83.32 E-value=6.1 Score=23.82 Aligned_cols=13 Identities=31% Similarity=0.718 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 035703 24 YGIAIAVSILVLI 36 (139)
Q Consensus 24 ~~i~i~l~~~~~i 36 (139)
.+|++++.+++++
T Consensus 10 ~Gm~iVF~~L~lL 22 (79)
T PF04277_consen 10 IGMGIVFLVLILL 22 (79)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 138
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=83.21 E-value=0.77 Score=32.45 Aligned_cols=21 Identities=5% Similarity=0.135 Sum_probs=9.4
Q ss_pred cccchhhHHHHHHHHHHHHHH
Q 035703 17 TTGVGLGYGIAIAVSILVLIS 37 (139)
Q Consensus 17 ~~~~~~~~~i~i~l~~~~~i~ 37 (139)
..++.+.+.++++++++++++
T Consensus 73 ~~~~~~~iivgvi~~Vi~Iv~ 93 (179)
T PF13908_consen 73 PIYFITGIIVGVICGVIAIVV 93 (179)
T ss_pred cccceeeeeeehhhHHHHHHH
Confidence 334444444445444444433
No 139
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=83.21 E-value=0.73 Score=22.20 Aligned_cols=23 Identities=22% Similarity=0.553 Sum_probs=13.4
Q ss_pred ccccCcccccCCCceeecCCCCCcc
Q 035703 78 PCSICLCDYKPKDSVRCIPDCHHCF 102 (139)
Q Consensus 78 ~C~ICl~~~~~~~~~~~lp~C~H~f 102 (139)
.|+-|...+... ...-|.|||.|
T Consensus 2 ~CP~C~~~V~~~--~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPES--AKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhh--cCcCCCCCCCC
Confidence 477776665433 33345577776
No 140
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=82.28 E-value=0.78 Score=33.55 Aligned_cols=44 Identities=27% Similarity=0.847 Sum_probs=33.9
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCR 121 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR 121 (139)
+-..|.+|..-.-.+ ++.- .||=.+|..|+..++++...||.|.
T Consensus 180 nlk~Cn~Ch~LvIqg--~rCg-~c~i~~h~~c~qty~q~~~~cphc~ 223 (235)
T KOG4718|consen 180 NLKNCNLCHCLVIQG--IRCG-SCNIQYHRGCIQTYLQRRDICPHCG 223 (235)
T ss_pred HHHHHhHhHHHhhee--eccC-cccchhhhHHHHHHhcccCcCCchh
Confidence 556799998765443 3323 3888899999999999988999994
No 141
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=80.26 E-value=2.1 Score=33.26 Aligned_cols=50 Identities=24% Similarity=0.551 Sum_probs=34.7
Q ss_pred CCCccccCccccc---------------C-CCceeecCCCCCcccHHHHHHHHhC---------CCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYK---------------P-KDSVRCIPDCHHCFHADCVDEWLRM---------SATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~---------------~-~~~~~~lp~C~H~fH~~Ci~~wl~~---------~~~CP~CR~~v~ 125 (139)
...+|++|+..=. . .-.....| |||+--++-..-|-+. +..||.|-..+.
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~P-CGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNP-CGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCC-cccccchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 5678999986421 0 01223567 9999999999999753 236999987765
No 142
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=79.45 E-value=1.8 Score=24.43 Aligned_cols=42 Identities=29% Similarity=0.652 Sum_probs=20.7
Q ss_pred cccCcccccCCC------ceeecCCCCCcccHHHHHHHH-hCCCCCcccC
Q 035703 79 CSICLCDYKPKD------SVRCIPDCHHCFHADCVDEWL-RMSATCPLCR 121 (139)
Q Consensus 79 C~ICl~~~~~~~------~~~~lp~C~H~fH~~Ci~~wl-~~~~~CP~CR 121 (139)
|--|+..+..+. ....-|.|++.|+.+| +.++ +.-.+||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC-D~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC-DVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH-HHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc-ChhhhccccCCcCCC
Confidence 445666666542 3445567999999999 3333 2334799883
No 143
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=79.22 E-value=5.1 Score=24.45 Aligned_cols=27 Identities=7% Similarity=0.105 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 035703 23 GYGIAIAVSILVLISTIMLASYACIRV 49 (139)
Q Consensus 23 ~~~i~i~l~~~~~i~~~~~~~~~~~r~ 49 (139)
.|.+..++.|++++..+++++.+..++
T Consensus 4 ~fl~~plivf~ifVap~WL~lHY~sk~ 30 (75)
T PF06667_consen 4 EFLFVPLIVFMIFVAPIWLILHYRSKW 30 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444555566666666555443
No 144
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.42 E-value=1 Score=35.90 Aligned_cols=45 Identities=20% Similarity=0.504 Sum_probs=32.3
Q ss_pred CCCccccCcccccCCC--ceeecCCCCCcccHHHHHHHHhCCCCCccc
Q 035703 75 DYGPCSICLCDYKPKD--SVRCIPDCHHCFHADCVDEWLRMSATCPLC 120 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~--~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~C 120 (139)
....|++|.-.++-.+ ....-. |||-|+..|...|...+..|..|
T Consensus 305 ~wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 305 RWRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred hcCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 4677999976655433 333445 99999999999998777766444
No 145
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=78.38 E-value=7.5 Score=26.01 Aligned_cols=37 Identities=8% Similarity=0.054 Sum_probs=21.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 035703 19 GVGLGYGIAIAVSILVLISTIMLASYACIRVKANANR 55 (139)
Q Consensus 19 ~~~~~~~i~i~l~~~~~i~~~~~~~~~~~r~~~~~~~ 55 (139)
..-.++.++++.+++.+|+++.++....++......+
T Consensus 64 ~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~~~~~~ 100 (122)
T PF01102_consen 64 PAIIGIIFGVMAGVIGIILLISYCIRRLRKKSSSDVQ 100 (122)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHS--------
T ss_pred cceeehhHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 3446677777788888887777777877777766544
No 146
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=78.21 E-value=1.5 Score=22.82 Aligned_cols=26 Identities=27% Similarity=0.689 Sum_probs=14.6
Q ss_pred ccccCcccccCCCc-------eeecCCCCCccc
Q 035703 78 PCSICLCDYKPKDS-------VRCIPDCHHCFH 103 (139)
Q Consensus 78 ~C~ICl~~~~~~~~-------~~~lp~C~H~fH 103 (139)
.|+=|-..|+.++. ...-+.|+|+|+
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 57777777664432 122335777764
No 147
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=78.19 E-value=0.15 Score=27.23 Aligned_cols=10 Identities=10% Similarity=-0.015 Sum_probs=3.7
Q ss_pred HHHHHHHHhh
Q 035703 39 IMLASYACIR 48 (139)
Q Consensus 39 ~~~~~~~~~r 48 (139)
+.+++++.+|
T Consensus 28 l~~~l~~~~r 37 (40)
T PF08693_consen 28 LGAFLFFWYR 37 (40)
T ss_pred HHHHhheEEe
Confidence 3333343333
No 148
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=77.25 E-value=1.9 Score=24.13 Aligned_cols=39 Identities=18% Similarity=0.411 Sum_probs=24.7
Q ss_pred cccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCCCC
Q 035703 79 CSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPATP 127 (139)
Q Consensus 79 C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~~~ 127 (139)
|.-|-+.+..++.+. .. -|..||.+|+ .|-.|++++...
T Consensus 1 C~~C~~~I~~~~~~~-~~-~~~~~H~~Cf--------~C~~C~~~l~~~ 39 (58)
T PF00412_consen 1 CARCGKPIYGTEIVI-KA-MGKFWHPECF--------KCSKCGKPLNDG 39 (58)
T ss_dssp BTTTSSBESSSSEEE-EE-TTEEEETTTS--------BETTTTCBTTTS
T ss_pred CCCCCCCccCcEEEE-Ee-CCcEEEcccc--------ccCCCCCccCCC
Confidence 566777776544432 22 6777888773 488888777543
No 149
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=75.50 E-value=12 Score=25.12 Aligned_cols=24 Identities=13% Similarity=0.264 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 035703 26 IAIAVSILVLISTIMLASYACIRV 49 (139)
Q Consensus 26 i~i~l~~~~~i~~~~~~~~~~~r~ 49 (139)
|.++++|..++.+.+++.|...++
T Consensus 47 IL~vmgfFgff~~gImlsyvRSKK 70 (129)
T PF02060_consen 47 ILVVMGFFGFFTVGIMLSYVRSKK 70 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444434433333334444333
No 150
>PRK09458 pspB phage shock protein B; Provisional
Probab=75.15 E-value=5 Score=24.45 Aligned_cols=27 Identities=7% Similarity=-0.004 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 035703 24 YGIAIAVSILVLISTIMLASYACIRVK 50 (139)
Q Consensus 24 ~~i~i~l~~~~~i~~~~~~~~~~~r~~ 50 (139)
+..+..+.|++++..+++++.+..+++
T Consensus 5 fl~~PliiF~ifVaPiWL~LHY~sk~~ 31 (75)
T PRK09458 5 FLAIPLTIFVLFVAPIWLWLHYRSKRQ 31 (75)
T ss_pred HHHHhHHHHHHHHHHHHHHHhhccccc
Confidence 333444445555566666665555443
No 151
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=75.06 E-value=7.4 Score=20.26 Aligned_cols=18 Identities=17% Similarity=0.401 Sum_probs=10.0
Q ss_pred chhhHHHHHHHHHHHHHH
Q 035703 20 VGLGYGIAIAVSILVLIS 37 (139)
Q Consensus 20 ~~~~~~i~i~l~~~~~i~ 37 (139)
.|+.|++..++.|++++.
T Consensus 15 ~Wi~F~l~mi~vFi~li~ 32 (38)
T PF09125_consen 15 GWIAFALAMILVFIALIG 32 (38)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 355666665555555544
No 152
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=74.73 E-value=3.8 Score=31.34 Aligned_cols=31 Identities=19% Similarity=0.121 Sum_probs=20.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 035703 21 GLGYGIAIAVSILVLISTIMLASYACIRVKA 51 (139)
Q Consensus 21 ~~~~~i~i~l~~~~~i~~~~~~~~~~~r~~~ 51 (139)
=+.++++|.++.++++.++.+++.+.+|+++
T Consensus 229 VVlIslAiALG~v~ll~l~Gii~~~~~r~~~ 259 (281)
T PF12768_consen 229 VVLISLAIALGTVFLLVLIGIILAYIRRRRQ 259 (281)
T ss_pred EEEEehHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3455677777777777777776666665543
No 153
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=74.64 E-value=20 Score=29.71 Aligned_cols=6 Identities=17% Similarity=0.528 Sum_probs=2.3
Q ss_pred HHHHHH
Q 035703 106 CVDEWL 111 (139)
Q Consensus 106 Ci~~wl 111 (139)
++..||
T Consensus 294 sL~dyL 299 (534)
T KOG3653|consen 294 SLCDYL 299 (534)
T ss_pred cHHHHH
Confidence 333333
No 154
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=74.62 E-value=3 Score=26.31 Aligned_cols=11 Identities=27% Similarity=0.483 Sum_probs=4.3
Q ss_pred CCCccccchhh
Q 035703 13 AATTTTGVGLG 23 (139)
Q Consensus 13 ~~~~~~~~~~~ 23 (139)
+++..++..+.
T Consensus 25 ~~p~ss~~~ws 35 (91)
T PF01708_consen 25 AAPSSSGLPWS 35 (91)
T ss_pred CCCCCCCCcce
Confidence 33444444333
No 155
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=74.39 E-value=2 Score=27.61 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 035703 27 AIAVSILVLISTIMLASYACIRV 49 (139)
Q Consensus 27 ~i~l~~~~~i~~~~~~~~~~~r~ 49 (139)
..++++++++.++++++||..-+
T Consensus 66 i~lls~v~IlVily~IyYFVILR 88 (101)
T PF06024_consen 66 ISLLSFVCILVILYAIYYFVILR 88 (101)
T ss_pred HHHHHHHHHHHHHhhheEEEEEe
Confidence 33334444444445555554433
No 156
>PRK13415 flagella biosynthesis protein FliZ; Provisional
Probab=74.27 E-value=12 Score=27.52 Aligned_cols=30 Identities=17% Similarity=0.053 Sum_probs=13.3
Q ss_pred CCCccccchhhHHHHHHHHHHHHHHHHHHH
Q 035703 13 AATTTTGVGLGYGIAIAVSILVLISTIMLA 42 (139)
Q Consensus 13 ~~~~~~~~~~~~~i~i~l~~~~~i~~~~~~ 42 (139)
+.+..+.......+-+++++++++++++++
T Consensus 56 ~~~~~~~~s~~~l~qmi~aL~~VI~Liy~l 85 (219)
T PRK13415 56 AEAAASSVSAFDFVKLIGATLFVIFLIYAL 85 (219)
T ss_pred ccCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444443
No 157
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=74.08 E-value=6.1 Score=24.26 Aligned_cols=51 Identities=18% Similarity=0.329 Sum_probs=20.4
Q ss_pred CCCccccCcccccC---CCceeecCCCCCcccHHHHHHHH-hCCCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYKP---KDSVRCIPDCHHCFHADCVDEWL-RMSATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~~---~~~~~~lp~C~H~fH~~Ci~~wl-~~~~~CP~CR~~v~ 125 (139)
+...|-||-+++.. ++.-..-..|+--.++.|++-=. ..++.||-|+.+-.
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 55689999988753 33222222366678899987554 45668999997654
No 158
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=73.33 E-value=1.6 Score=25.68 Aligned_cols=36 Identities=14% Similarity=0.351 Sum_probs=17.6
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHH
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEW 110 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~w 110 (139)
+...|.+|...|.--..-..-..||++|+.+|....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 456799999999653322233359999999987644
No 159
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=72.53 E-value=4 Score=30.95 Aligned_cols=17 Identities=35% Similarity=0.886 Sum_probs=14.0
Q ss_pred ccHHHHHHH-HhCCCCCc
Q 035703 102 FHADCVDEW-LRMSATCP 118 (139)
Q Consensus 102 fH~~Ci~~w-l~~~~~CP 118 (139)
=|++|++.| +.-++.||
T Consensus 57 GHrdCFEK~HlIanQ~~p 74 (285)
T PF06937_consen 57 GHRDCFEKYHLIANQDCP 74 (285)
T ss_pred chHHHHHHHHHHHcCCCC
Confidence 689999999 46677788
No 160
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.09 E-value=1.5 Score=33.73 Aligned_cols=53 Identities=26% Similarity=0.535 Sum_probs=41.5
Q ss_pred CCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCCCCC
Q 035703 73 TNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPATPL 128 (139)
Q Consensus 73 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~~~~ 128 (139)
..+.+.|-||...+..+... .+|.|-|...|-..|......||-||....+.+
T Consensus 102 ~~~~~~~~~~~g~l~vpt~~---qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~pv~ 154 (324)
T KOG0824|consen 102 QQDHDICYICYGKLTVPTRI---QGCWHQFCYVCPKSNFAMGNDCPDCRGKISPVL 154 (324)
T ss_pred cCCccceeeeeeeEEecccc---cCceeeeeecCCchhhhhhhccchhhcCcCcee
Confidence 34667799998887765432 259999999999999999999999988766443
No 161
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=71.90 E-value=1.3 Score=26.71 Aligned_cols=40 Identities=20% Similarity=0.531 Sum_probs=18.5
Q ss_pred CccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 77 GPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 77 ~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
..|+.|..+++... +|.++..|-..+ .....||-|.+++.
T Consensus 2 ~~CP~C~~~L~~~~--------~~~~C~~C~~~~-~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQG--------GHYHCEACQKDY-KKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEET--------TEEEETTT--EE-EEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEeC--------CEEECccccccc-eecccCCCcccHHH
Confidence 36899988876533 333444443321 33446899988764
No 162
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=71.57 E-value=26 Score=23.08 Aligned_cols=14 Identities=14% Similarity=0.404 Sum_probs=10.8
Q ss_pred hCCCCCcccCCCCC
Q 035703 112 RMSATCPLCRSSPA 125 (139)
Q Consensus 112 ~~~~~CP~CR~~v~ 125 (139)
.+...|+.|++++.
T Consensus 83 Gr~D~CM~C~~pLT 96 (114)
T PF11023_consen 83 GRVDACMHCKEPLT 96 (114)
T ss_pred chhhccCcCCCcCc
Confidence 34557999999987
No 163
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=71.52 E-value=1.3 Score=36.01 Aligned_cols=13 Identities=31% Similarity=0.659 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH
Q 035703 34 VLISTIMLASYAC 46 (139)
Q Consensus 34 ~~i~~~~~~~~~~ 46 (139)
+++++++++.+.+
T Consensus 363 vlivVv~viv~vc 375 (439)
T PF02480_consen 363 VLIVVVGVIVWVC 375 (439)
T ss_dssp -------------
T ss_pred HHHHHHHHHhhee
Confidence 3333333333333
No 164
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=71.29 E-value=7.7 Score=30.63 Aligned_cols=28 Identities=21% Similarity=0.403 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 035703 25 GIAIAVSILVLISTIMLASYACIRVKAN 52 (139)
Q Consensus 25 ~i~i~l~~~~~i~~~~~~~~~~~r~~~~ 52 (139)
.+...+..+++|.+++++.|...|.|+.
T Consensus 311 ~IiaSiIAIvvIVLIMvIIYLILRYRRK 338 (353)
T TIGR01477 311 PIIASIIAILIIVLIMVIIYLILRYRRK 338 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3344444444555666666766655554
No 165
>PTZ00046 rifin; Provisional
Probab=71.23 E-value=7.7 Score=30.70 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 035703 25 GIAIAVSILVLISTIMLASYACIRVKAN 52 (139)
Q Consensus 25 ~i~i~l~~~~~i~~~~~~~~~~~r~~~~ 52 (139)
.+...+..+++|.+++++.|...|.|+.
T Consensus 316 aIiaSiiAIvVIVLIMvIIYLILRYRRK 343 (358)
T PTZ00046 316 AIIASIVAIVVIVLIMVIIYLILRYRRK 343 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3444444445556666667766655544
No 166
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=71.14 E-value=1.3 Score=35.29 Aligned_cols=26 Identities=38% Similarity=0.862 Sum_probs=0.0
Q ss_pred ecCCCCCcccHHHHHHHHh------CCCCCcccCCC
Q 035703 94 CIPDCHHCFHADCVDEWLR------MSATCPLCRSS 123 (139)
Q Consensus 94 ~lp~C~H~fH~~Ci~~wl~------~~~~CP~CR~~ 123 (139)
.+. |||++-.. .|-. +.++||+||..
T Consensus 306 Yl~-CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 306 YLN-CGHVHGYH---NWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp ------------------------------------
T ss_pred ecc-ccceeeec---ccccccccccccccCCCcccc
Confidence 354 99984432 2542 24589999874
No 167
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=71.11 E-value=3.7 Score=20.09 Aligned_cols=29 Identities=17% Similarity=0.437 Sum_probs=10.2
Q ss_pred ccccCcccccCCCceeecCCCCCcccHHHH
Q 035703 78 PCSICLCDYKPKDSVRCIPDCHHCFHADCV 107 (139)
Q Consensus 78 ~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci 107 (139)
.|.+|-+.... +....-+.|+-.+|.+|+
T Consensus 2 ~C~~C~~~~~~-~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDG-GWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S---EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCC-CceEECccCCCccChhcC
Confidence 47888887665 233333449999999985
No 168
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=70.50 E-value=9.3 Score=22.15 Aligned_cols=11 Identities=45% Similarity=0.492 Sum_probs=4.0
Q ss_pred hhHHHHHHHHH
Q 035703 22 LGYGIAIAVSI 32 (139)
Q Consensus 22 ~~~~i~i~l~~ 32 (139)
++..+.+++++
T Consensus 20 l~l~il~~f~~ 30 (68)
T PF06305_consen 20 LGLLILIAFLL 30 (68)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 169
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.32 E-value=3.5 Score=30.99 Aligned_cols=34 Identities=18% Similarity=0.346 Sum_probs=27.9
Q ss_pred CCCCccccCcccccCCCceeecCCCCCcccHHHHHHHH
Q 035703 74 NDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWL 111 (139)
Q Consensus 74 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl 111 (139)
.+-+.|..||+++.++ ...| =||+|.++||.+++
T Consensus 41 K~FdcCsLtLqPc~dP---vit~-~GylfdrEaILe~i 74 (303)
T KOG3039|consen 41 KPFDCCSLTLQPCRDP---VITP-DGYLFDREAILEYI 74 (303)
T ss_pred CCcceeeeecccccCC---ccCC-CCeeeeHHHHHHHH
Confidence 3566799999998874 3466 89999999999987
No 170
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=70.29 E-value=7.7 Score=29.99 Aligned_cols=33 Identities=15% Similarity=0.083 Sum_probs=19.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 035703 18 TGVGLGYGIAIAVSILVLISTIMLASYACIRVK 50 (139)
Q Consensus 18 ~~~~~~~~i~i~l~~~~~i~~~~~~~~~~~r~~ 50 (139)
....+..++..++.++++++++++++.++++.+
T Consensus 254 ~~t~I~aSiiaIliIVLIMvIIYLILRYRRKKK 286 (299)
T PF02009_consen 254 LTTAIIASIIAILIIVLIMVIIYLILRYRRKKK 286 (299)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445556666555556556666666666655444
No 171
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=69.06 E-value=6.1 Score=30.92 Aligned_cols=50 Identities=24% Similarity=0.458 Sum_probs=33.8
Q ss_pred CCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCC
Q 035703 73 TNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSS 123 (139)
Q Consensus 73 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~ 123 (139)
.+....|-.|.++.......+.-. |.|+||.+|=.--=+.=..||.|...
T Consensus 327 ~~~~~~Cf~C~~~~~~~~~y~C~~-Ck~~FCldCDv~iHesLh~CpgCeh~ 376 (378)
T KOG2807|consen 327 YNGSRFCFACQGELLSSGRYRCES-CKNVFCLDCDVFIHESLHNCPGCEHK 376 (378)
T ss_pred cCCCcceeeeccccCCCCcEEchh-ccceeeccchHHHHhhhhcCCCcCCC
Confidence 345566999987777666555444 99999999933222333479999743
No 172
>PF14979 TMEM52: Transmembrane 52
Probab=69.01 E-value=12 Score=25.89 Aligned_cols=37 Identities=14% Similarity=0.015 Sum_probs=21.5
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 035703 16 TTTGVGLGYGIAIAVSILVLISTIMLASYACIRVKAN 52 (139)
Q Consensus 16 ~~~~~~~~~~i~i~l~~~~~i~~~~~~~~~~~r~~~~ 52 (139)
.-.++|+.|.+.++++.+++-.+...-+.++..+|++
T Consensus 15 ~W~~LWyIwLill~~~llLLCG~ta~C~rfCClrk~~ 51 (154)
T PF14979_consen 15 RWSSLWYIWLILLIGFLLLLCGLTASCVRFCCLRKQA 51 (154)
T ss_pred ceehhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4566777777766666655555555444445555543
No 173
>PHA02650 hypothetical protein; Provisional
Probab=68.88 E-value=15 Score=22.60 Aligned_cols=26 Identities=8% Similarity=-0.150 Sum_probs=12.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 035703 21 GLGYGIAIAVSILVLISTIMLASYAC 46 (139)
Q Consensus 21 ~~~~~i~i~l~~~~~i~~~~~~~~~~ 46 (139)
|..+.+.|++.+++++.+++.++|..
T Consensus 46 ~~~~~~~ii~i~~v~i~~l~~flYLK 71 (81)
T PHA02650 46 WFNGQNFIFLIFSLIIVALFSFFVFK 71 (81)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444545544444444444444443
No 174
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=68.66 E-value=13 Score=22.64 Aligned_cols=18 Identities=6% Similarity=0.139 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 035703 32 ILVLISTIMLASYACIRV 49 (139)
Q Consensus 32 ~~~~i~~~~~~~~~~~r~ 49 (139)
|+++++.+++++.+..+.
T Consensus 13 f~ifVap~wl~lHY~~k~ 30 (75)
T TIGR02976 13 FVIFVAPLWLILHYRSKR 30 (75)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 344445555555544443
No 175
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=68.60 E-value=14 Score=22.79 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=26.5
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 035703 16 TTTGVGLGYGIAIAVSILVLISTIMLASYACIRVKANANR 55 (139)
Q Consensus 16 ~~~~~~~~~~i~i~l~~~~~i~~~~~~~~~~~r~~~~~~~ 55 (139)
.-..+..+.-.+|+++=+++-++|.+..|.+-|.+++..+
T Consensus 27 ~C~~ls~g~LaGiV~~D~vlTLLIv~~vy~car~r~r~~~ 66 (79)
T PF07213_consen 27 GCYPLSPGLLAGIVAADAVLTLLIVLVVYYCARPRRRPTQ 66 (79)
T ss_pred CccccCHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCcc
Confidence 4445566666677777667767777777777776655554
No 176
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=68.46 E-value=5.6 Score=31.00 Aligned_cols=48 Identities=27% Similarity=0.514 Sum_probs=35.3
Q ss_pred CccccCcccccCCCceeecC-CCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 77 GPCSICLCDYKPKDSVRCIP-DCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 77 ~~C~ICl~~~~~~~~~~~lp-~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
..|+||-+.....+.. .+| .|+|..|..|+..-...+.+||.||++..
T Consensus 250 ~s~p~~~~~~~~~d~~-~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSN-FLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCcccccccc-cccccccccchhhhhhcccccCCCCCccCCccc
Confidence 6799999987444322 233 38888888888777777889999997665
No 177
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=68.26 E-value=2.8 Score=21.65 Aligned_cols=25 Identities=36% Similarity=0.837 Sum_probs=14.8
Q ss_pred ccccCcccccCCCc--------eeecCCCCCccc
Q 035703 78 PCSICLCDYKPKDS--------VRCIPDCHHCFH 103 (139)
Q Consensus 78 ~C~ICl~~~~~~~~--------~~~lp~C~H~fH 103 (139)
.|+=|...|+.++. +. -+.|+|.|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~-C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVR-CSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEE-CCCCCCEeC
Confidence 57777777765442 22 335777774
No 178
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=68.12 E-value=3.6 Score=24.44 Aligned_cols=11 Identities=36% Similarity=1.247 Sum_probs=8.2
Q ss_pred ccHHHHHHHHh
Q 035703 102 FHADCVDEWLR 112 (139)
Q Consensus 102 fH~~Ci~~wl~ 112 (139)
||++|+..|+.
T Consensus 12 FCRNCLskWy~ 22 (68)
T PF06844_consen 12 FCRNCLSKWYR 22 (68)
T ss_dssp --HHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999984
No 179
>PF15050 SCIMP: SCIMP protein
Probab=67.98 E-value=13 Score=24.76 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 035703 24 YGIAIAVSILVLISTIMLASYACIRV 49 (139)
Q Consensus 24 ~~i~i~l~~~~~i~~~~~~~~~~~r~ 49 (139)
|.++++++++++-..+.+++|-..|+
T Consensus 8 FWiiLAVaII~vS~~lglIlyCvcR~ 33 (133)
T PF15050_consen 8 FWIILAVAIILVSVVLGLILYCVCRW 33 (133)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677655544444444433333
No 180
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=67.68 E-value=5.1 Score=22.38 Aligned_cols=35 Identities=14% Similarity=0.382 Sum_probs=23.7
Q ss_pred CccccCcccccCCCceeecCCCCCcccHHHHHHHH
Q 035703 77 GPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWL 111 (139)
Q Consensus 77 ~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl 111 (139)
..|.+|-..|.....-..-..||++|+.+|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 46889987776533222233599999999977654
No 181
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=67.20 E-value=7.7 Score=28.25 Aligned_cols=18 Identities=17% Similarity=0.060 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 035703 32 ILVLISTIMLASYACIRV 49 (139)
Q Consensus 32 ~~~~i~~~~~~~~~~~r~ 49 (139)
|++++++++.+++...|+
T Consensus 111 ~lLla~~~~~~Y~~~~Rr 128 (202)
T PF06365_consen 111 FLLLAILLGAGYCCHQRR 128 (202)
T ss_pred HHHHHHHHHHHHHhhhhc
Confidence 344444444444444333
No 182
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=67.19 E-value=1.7 Score=25.67 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 035703 23 GYGIAIAVSILVLISTIMLASY 44 (139)
Q Consensus 23 ~~~i~i~l~~~~~i~~~~~~~~ 44 (139)
+...+.++++++++++++++.|
T Consensus 13 avIaG~Vvgll~ailLIlf~iy 34 (64)
T PF01034_consen 13 AVIAGGVVGLLFAILLILFLIY 34 (64)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333
No 183
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=66.50 E-value=17 Score=19.75 Aligned_cols=12 Identities=33% Similarity=0.368 Sum_probs=5.3
Q ss_pred cchhhHHHHHHH
Q 035703 19 GVGLGYGIAIAV 30 (139)
Q Consensus 19 ~~~~~~~i~i~l 30 (139)
.+|..|++.+++
T Consensus 6 yVW~sYg~t~~~ 17 (46)
T PF04995_consen 6 YVWSSYGVTALV 17 (46)
T ss_pred HHHHHHHHHHHH
Confidence 344445444433
No 184
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=66.42 E-value=9.4 Score=25.15 Aligned_cols=46 Identities=20% Similarity=0.292 Sum_probs=31.5
Q ss_pred CCccccCcccccCCC----------ceeecCCCCCcccHHHHHHHHhCCCCCcccC
Q 035703 76 YGPCSICLCDYKPKD----------SVRCIPDCHHCFHADCVDEWLRMSATCPLCR 121 (139)
Q Consensus 76 ~~~C~ICl~~~~~~~----------~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR 121 (139)
...|--|+..|..+. ....-+.|++.|+.+|=.-+-+.=.+||.|.
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 346999998876431 1223456999999999555545556799995
No 185
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=66.07 E-value=3.5 Score=20.78 Aligned_cols=20 Identities=20% Similarity=0.692 Sum_probs=12.3
Q ss_pred CCCcccHHHHHHHHhCCCCCcccCCC
Q 035703 98 CHHCFHADCVDEWLRMSATCPLCRSS 123 (139)
Q Consensus 98 C~H~fH~~Ci~~wl~~~~~CP~CR~~ 123 (139)
|||++-.+- ....||.|..+
T Consensus 7 CGy~y~~~~------~~~~CP~Cg~~ 26 (33)
T cd00350 7 CGYIYDGEE------APWVCPVCGAP 26 (33)
T ss_pred CCCEECCCc------CCCcCcCCCCc
Confidence 777664432 33479999764
No 186
>PHA02849 putative transmembrane protein; Provisional
Probab=65.94 E-value=19 Score=22.10 Aligned_cols=28 Identities=21% Similarity=0.185 Sum_probs=12.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 035703 19 GVGLGYGIAIAVSILVLISTIMLASYAC 46 (139)
Q Consensus 19 ~~~~~~~i~i~l~~~~~i~~~~~~~~~~ 46 (139)
+++.+..+.|.+.++++.+++++++|..
T Consensus 11 ~f~~g~v~vi~v~v~vI~i~~flLlyLv 38 (82)
T PHA02849 11 EFDAGAVTVILVFVLVISFLAFMLLYLI 38 (82)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 187
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=65.79 E-value=12 Score=21.51 Aligned_cols=45 Identities=31% Similarity=0.698 Sum_probs=29.8
Q ss_pred ccccCcccccCCCceeecCCCC--CcccHHHHHHHHhCCCCCcccCCCCCC
Q 035703 78 PCSICLCDYKPKDSVRCIPDCH--HCFHADCVDEWLRMSATCPLCRSSPAT 126 (139)
Q Consensus 78 ~C~ICl~~~~~~~~~~~lp~C~--H~fH~~Ci~~wl~~~~~CP~CR~~v~~ 126 (139)
.|-.|-.++..+..-... |. ..|+.+|.+.-| +..||.|--.++.
T Consensus 7 nCE~C~~dLp~~s~~A~I--CSfECTFC~~C~e~~l--~~~CPNCgGelv~ 53 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYI--CSFECTFCADCAETML--NGVCPNCGGELVR 53 (57)
T ss_pred CccccCCCCCCCCCcceE--EeEeCcccHHHHHHHh--cCcCcCCCCcccc
Confidence 366676666654411111 65 349999999876 4689999777664
No 188
>PLN02189 cellulose synthase
Probab=65.24 E-value=8.7 Score=34.53 Aligned_cols=51 Identities=20% Similarity=0.361 Sum_probs=34.9
Q ss_pred CCCccccCccccc---CCCceeecCCCCCcccHHHHHHHH-hCCCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYK---PKDSVRCIPDCHHCFHADCVDEWL-RMSATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~---~~~~~~~lp~C~H~fH~~Ci~~wl-~~~~~CP~CR~~v~ 125 (139)
....|.||-|++. +|+.-+....|+--.|..|.+-=- +.++.||-|+..-.
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 5568999999876 334333334477778999984322 34568999998654
No 189
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=64.92 E-value=2.1 Score=34.18 Aligned_cols=50 Identities=20% Similarity=0.495 Sum_probs=0.0
Q ss_pred CCCccccCccccc----------------CCCceeecCCCCCcccHHHHHHHHhC---------CCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYK----------------PKDSVRCIPDCHHCFHADCVDEWLRM---------SATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~----------------~~~~~~~lp~C~H~fH~~Ci~~wl~~---------~~~CP~CR~~v~ 125 (139)
....|++|+..=. ..-.....| |||+-=.+...-|-+. +..||.|-.++.
T Consensus 327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~P-CGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNP-CGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred ccccCCCccccCCceeEeeccccceeecCCCCceeecc-cccccchhhhhhhhcCCCCCCcccccccCCcccCccc
Confidence 3678999985421 111334578 9999999999999642 136999988775
No 190
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=64.70 E-value=1.4 Score=33.58 Aligned_cols=44 Identities=23% Similarity=0.498 Sum_probs=17.9
Q ss_pred CCccccCccccc-----CCC--ceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 76 YGPCSICLCDYK-----PKD--SVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 76 ~~~C~ICl~~~~-----~~~--~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
...||+|-..-. .++ ..+ |.+|.-|-.+|-..+..||.|-..=.
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R------~L~Cs~C~t~W~~~R~~Cp~Cg~~~~ 222 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKR------YLHCSLCGTEWRFVRIKCPYCGNTDH 222 (290)
T ss_dssp -SS-TTT---EEEEEEE------EE------EEEETTT--EEE--TTS-TTT---SS
T ss_pred CCcCCCCCCcCceEEEecCCCCccE------EEEcCCCCCeeeecCCCCcCCCCCCC
Confidence 368999966532 211 112 44566677777667788999966533
No 191
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=64.53 E-value=9.5 Score=24.72 Aligned_cols=24 Identities=25% Similarity=0.598 Sum_probs=17.6
Q ss_pred CCcccHHHHHHHHhC---------CCCCcccCC
Q 035703 99 HHCFHADCVDEWLRM---------SATCPLCRS 122 (139)
Q Consensus 99 ~H~fH~~Ci~~wl~~---------~~~CP~CR~ 122 (139)
.=.|+..||..++.. +-.||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 566999999888742 225999876
No 192
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=63.10 E-value=15 Score=21.91 Aligned_cols=21 Identities=19% Similarity=0.176 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhh
Q 035703 32 ILVLISTIMLASYACIRVKAN 52 (139)
Q Consensus 32 ~~~~i~~~~~~~~~~~r~~~~ 52 (139)
+++.++..+.-.||..|..++
T Consensus 42 i~~~~lt~ltN~YFK~k~drr 62 (68)
T PF04971_consen 42 IFFGLLTYLTNLYFKIKEDRR 62 (68)
T ss_pred HHHHHHHHHhHhhhhhhHhhh
Confidence 333333444444555444433
No 193
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=62.72 E-value=36 Score=21.94 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=12.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHH
Q 035703 19 GVGLGYGIAIAVSILVLISTIMLA 42 (139)
Q Consensus 19 ~~~~~~~i~i~l~~~~~i~~~~~~ 42 (139)
+-...|.++++++.+++-++|.++
T Consensus 14 g~sW~~LVGVv~~al~~SlLIala 37 (102)
T PF15176_consen 14 GRSWPFLVGVVVTALVTSLLIALA 37 (102)
T ss_pred CcccHhHHHHHHHHHHHHHHHHHH
Confidence 444455666666655554444433
No 195
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=62.18 E-value=20 Score=31.33 Aligned_cols=29 Identities=14% Similarity=0.172 Sum_probs=14.0
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHhhhhhhhc
Q 035703 26 IAIAVSILVL-ISTIMLASYACIRVKANAN 54 (139)
Q Consensus 26 i~i~l~~~~~-i~~~~~~~~~~~r~~~~~~ 54 (139)
++|.-+++++ ++++.+.+|+|+|...+.+
T Consensus 276 l~ILG~~~livl~lL~vLl~yCrrkc~~~r 305 (807)
T PF10577_consen 276 LAILGGTALIVLILLCVLLCYCRRKCLKPR 305 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCcc
Confidence 3444333333 3445555666766554443
No 196
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=62.00 E-value=3.9 Score=29.99 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 035703 22 LGYGIAIAVSILVLISTIMLASYAC 46 (139)
Q Consensus 22 ~~~~i~i~l~~~~~i~~~~~~~~~~ 46 (139)
+.+.++++.+++.+|++|++..+.+
T Consensus 37 ~~I~iaiVAG~~tVILVI~i~v~vR 61 (221)
T PF08374_consen 37 VKIMIAIVAGIMTVILVIFIVVLVR 61 (221)
T ss_pred eeeeeeeecchhhhHHHHHHHHHHH
Confidence 4455566666666665555555543
No 197
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=61.31 E-value=24 Score=23.39 Aligned_cols=13 Identities=8% Similarity=0.416 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHH
Q 035703 24 YGIAIAVSILVLI 36 (139)
Q Consensus 24 ~~i~i~l~~~~~i 36 (139)
+.+.++++-+.++
T Consensus 84 ~aLp~VIGGLcaL 96 (126)
T PF03229_consen 84 FALPLVIGGLCAL 96 (126)
T ss_pred cchhhhhhHHHHH
Confidence 4455555555444
No 198
>PRK05978 hypothetical protein; Provisional
Probab=60.62 E-value=7.7 Score=26.84 Aligned_cols=36 Identities=22% Similarity=0.487 Sum_probs=25.6
Q ss_pred cCCCC--CcccHHHHHHHHhCCCCCcccCCCCCCCCcccCCCc
Q 035703 95 IPDCH--HCFHADCVDEWLRMSATCPLCRSSPATPLAEVVPLA 135 (139)
Q Consensus 95 lp~C~--H~fH~~Ci~~wl~~~~~CP~CR~~v~~~~~~~~~~~ 135 (139)
.|+|| |.|+ .+++.+..||.|-.++....++.-|.+
T Consensus 36 CP~CG~G~LF~-----g~Lkv~~~C~~CG~~~~~~~a~DgpAy 73 (148)
T PRK05978 36 CPACGEGKLFR-----AFLKPVDHCAACGEDFTHHRADDLPAY 73 (148)
T ss_pred CCCCCCCcccc-----cccccCCCccccCCccccCCccccCcc
Confidence 44566 7776 578888899999999885544444444
No 199
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=60.10 E-value=49 Score=22.21 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHhhhh
Q 035703 34 VLISTIMLASYACIRVK 50 (139)
Q Consensus 34 ~~i~~~~~~~~~~~r~~ 50 (139)
+++.+++++.|..+|..
T Consensus 27 lVl~lI~~~aWLlkR~~ 43 (124)
T PRK11486 27 GIIALILAAAWLVKRLG 43 (124)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 33444555556666654
No 200
>PF14946 DUF4501: Domain of unknown function (DUF4501)
Probab=59.88 E-value=15 Score=25.82 Aligned_cols=30 Identities=20% Similarity=0.099 Sum_probs=12.4
Q ss_pred ccccchh--hHHHHHHHHHHHHHHHHHHHHHH
Q 035703 16 TTTGVGL--GYGIAIAVSILVLISTIMLASYA 45 (139)
Q Consensus 16 ~~~~~~~--~~~i~i~l~~~~~i~~~~~~~~~ 45 (139)
.++.-++ ...++.+++.+.+|+-+..++|+
T Consensus 83 ~~g~P~vAASL~LgTffIS~~LilSvA~FFYL 114 (180)
T PF14946_consen 83 HTGGPQVAASLFLGTFFISLGLILSVASFFYL 114 (180)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHhhheee
Confidence 4444333 33344444444444433333333
No 201
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=59.56 E-value=35 Score=22.22 Aligned_cols=21 Identities=24% Similarity=0.199 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 035703 29 AVSILVLISTIMLASYACIRV 49 (139)
Q Consensus 29 ~l~~~~~i~~~~~~~~~~~r~ 49 (139)
.++++.+++++.+++-...++
T Consensus 3 Ll~il~llLll~l~asl~~wr 23 (107)
T PF15330_consen 3 LLGILALLLLLSLAASLLAWR 23 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555554444444433333
No 202
>PHA02650 hypothetical protein; Provisional
Probab=59.49 E-value=38 Score=20.84 Aligned_cols=35 Identities=11% Similarity=0.003 Sum_probs=22.8
Q ss_pred CCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035703 14 ATTTTGVGLGYGIAIAVSILVLISTIMLASYACIR 48 (139)
Q Consensus 14 ~~~~~~~~~~~~i~i~l~~~~~i~~~~~~~~~~~r 48 (139)
.+.-+..|..+.+.+++.+++++..++......+.
T Consensus 42 ~~~~~~~~~~~ii~i~~v~i~~l~~flYLK~~~r~ 76 (81)
T PHA02650 42 KSVSWFNGQNFIFLIFSLIIVALFSFFVFKGYTRN 76 (81)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34556667777777777777777666666655543
No 203
>PLN02436 cellulose synthase A
Probab=59.35 E-value=13 Score=33.66 Aligned_cols=51 Identities=16% Similarity=0.365 Sum_probs=34.6
Q ss_pred CCCccccCccccc---CCCceeecCCCCCcccHHHHHHHH-hCCCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYK---PKDSVRCIPDCHHCFHADCVDEWL-RMSATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~---~~~~~~~lp~C~H~fH~~Ci~~wl-~~~~~CP~CR~~v~ 125 (139)
....|-||-|++. +|+.-+-...|+--.|..|.+-=- +.++.||-|++.-.
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 5568999999864 444333333477778999984322 34568999998654
No 204
>PHA02844 putative transmembrane protein; Provisional
Probab=58.79 E-value=22 Score=21.59 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 035703 24 YGIAIAVSILVLISTIMLASYA 45 (139)
Q Consensus 24 ~~i~i~l~~~~~i~~~~~~~~~ 45 (139)
+...|++.+.+++.+++.++|.
T Consensus 48 ~~~~ii~i~~v~~~~~~~flYL 69 (75)
T PHA02844 48 TKIWILTIIFVVFATFLTFLYL 69 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444443
No 205
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=58.71 E-value=6.3 Score=29.70 Aligned_cols=42 Identities=19% Similarity=0.263 Sum_probs=29.7
Q ss_pred CccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCC--CCcccC
Q 035703 77 GPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSA--TCPLCR 121 (139)
Q Consensus 77 ~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~--~CP~CR 121 (139)
..|||=...+.++ ++-. .|||+|-++-|.+.+.... .||+=-
T Consensus 177 ~rdPis~~~I~nP--viSk-kC~HvydrDsI~~~l~~~~~i~CPv~g 220 (262)
T KOG2979|consen 177 NRDPISKKPIVNP--VISK-KCGHVYDRDSIMQILCDEITIRCPVLG 220 (262)
T ss_pred ccCchhhhhhhch--hhhc-CcCcchhhhhHHHHhccCceeeccccc
Confidence 4588877776653 3333 5999999999999986633 577643
No 206
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=58.18 E-value=1.7 Score=23.22 Aligned_cols=24 Identities=33% Similarity=0.700 Sum_probs=14.3
Q ss_pred CCCCcccHHH-HHHHHhCCCCCcccCC
Q 035703 97 DCHHCFHADC-VDEWLRMSATCPLCRS 122 (139)
Q Consensus 97 ~C~H~fH~~C-i~~wl~~~~~CP~CR~ 122 (139)
.|||.|...- +.. .....||.|..
T Consensus 10 ~Cg~~fe~~~~~~~--~~~~~CP~Cg~ 34 (42)
T PF09723_consen 10 ECGHEFEVLQSISE--DDPVPCPECGS 34 (42)
T ss_pred CCCCEEEEEEEcCC--CCCCcCCCCCC
Confidence 3888776532 111 23447999988
No 207
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=58.17 E-value=28 Score=25.63 Aligned_cols=20 Identities=15% Similarity=0.188 Sum_probs=9.2
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 035703 22 LGYGIAIAVSILVLISTIML 41 (139)
Q Consensus 22 ~~~~i~i~l~~~~~i~~~~~ 41 (139)
-++.|.|.+++++++++|+.
T Consensus 126 ~K~amLIClIIIAVLfLICT 145 (227)
T PF05399_consen 126 NKMAMLICLIIIAVLFLICT 145 (227)
T ss_pred cchhHHHHHHHHHHHHHHHH
Confidence 34555554444444444433
No 208
>PHA03054 IMV membrane protein; Provisional
Probab=58.16 E-value=26 Score=21.06 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=10.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 035703 21 GLGYGIAIAVSILVLISTIMLASY 44 (139)
Q Consensus 21 ~~~~~i~i~l~~~~~i~~~~~~~~ 44 (139)
+..+.+.|++.+.+++.+++.+.|
T Consensus 45 ~~~~~~~ii~l~~v~~~~l~~flY 68 (72)
T PHA03054 45 CWGWYWLIIIFFIVLILLLLIYLY 68 (72)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444
No 209
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=57.96 E-value=1.8 Score=30.04 Aligned_cols=14 Identities=36% Similarity=0.522 Sum_probs=6.6
Q ss_pred HHHHHHHHhhhhhh
Q 035703 39 IMLASYACIRVKAN 52 (139)
Q Consensus 39 ~~~~~~~~~r~~~~ 52 (139)
+++++++++|.++.
T Consensus 67 l~lvf~~c~r~kkt 80 (154)
T PF04478_consen 67 LALVFIFCIRRKKT 80 (154)
T ss_pred HHhheeEEEecccC
Confidence 33344555555544
No 210
>PF15102 TMEM154: TMEM154 protein family
Probab=57.56 E-value=5.1 Score=27.63 Aligned_cols=10 Identities=20% Similarity=0.029 Sum_probs=3.8
Q ss_pred cchhhHHHHH
Q 035703 19 GVGLGYGIAI 28 (139)
Q Consensus 19 ~~~~~~~i~i 28 (139)
+..|.+.++|
T Consensus 54 q~efiLmIlI 63 (146)
T PF15102_consen 54 QLEFILMILI 63 (146)
T ss_pred CcceEEEEeH
Confidence 3443333333
No 211
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=57.19 E-value=10 Score=29.09 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=10.8
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHhhhhh
Q 035703 25 GIAIAVSILVL-ISTIMLASYACIRVKA 51 (139)
Q Consensus 25 ~i~i~l~~~~~-i~~~~~~~~~~~r~~~ 51 (139)
.+.|++|+.++ ++++.++.|++.|+|.
T Consensus 272 ~vPIaVG~~La~lvlivLiaYli~Rrr~ 299 (306)
T PF01299_consen 272 LVPIAVGAALAGLVLIVLIAYLIGRRRS 299 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHhheeEeccc
Confidence 34444443333 2333334444444443
No 212
>PHA02819 hypothetical protein; Provisional
Probab=57.05 E-value=29 Score=20.85 Aligned_cols=24 Identities=13% Similarity=0.097 Sum_probs=10.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 035703 21 GLGYGIAIAVSILVLISTIMLASY 44 (139)
Q Consensus 21 ~~~~~i~i~l~~~~~i~~~~~~~~ 44 (139)
+..+.+.|++.+.+++.+++.+.|
T Consensus 43 ~~~~~~~ii~l~~~~~~~~~~flY 66 (71)
T PHA02819 43 SFLRYYLIIGLVTIVFVIIFIIFY 66 (71)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444
No 213
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.41 E-value=5.5 Score=30.57 Aligned_cols=40 Identities=20% Similarity=0.322 Sum_probs=28.0
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMS 114 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~ 114 (139)
....|.+|.|.+++..-+..-.-=.|.||-.|=++-++.+
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHHhh
Confidence 4467999999999765443111124999999988887643
No 214
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=55.36 E-value=3.9 Score=33.26 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 035703 27 AIAVSILVLISTIMLASYACIRVKANA 53 (139)
Q Consensus 27 ~i~l~~~~~i~~~~~~~~~~~r~~~~~ 53 (139)
+++++++++++++++ ...++++|+..
T Consensus 360 gvavlivVv~viv~v-c~~~rrrR~~~ 385 (439)
T PF02480_consen 360 GVAVLIVVVGVIVWV-CLRCRRRRRQR 385 (439)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHhhe-eeeehhccccc
Confidence 334444444444444 44444443333
No 215
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=54.52 E-value=3.7 Score=23.04 Aligned_cols=10 Identities=40% Similarity=1.022 Sum_probs=5.1
Q ss_pred CCcccCCCCC
Q 035703 116 TCPLCRSSPA 125 (139)
Q Consensus 116 ~CP~CR~~v~ 125 (139)
.||+|.+++.
T Consensus 22 ~CPlC~r~l~ 31 (54)
T PF04423_consen 22 CCPLCGRPLD 31 (54)
T ss_dssp E-TTT--EE-
T ss_pred cCCCCCCCCC
Confidence 7999988875
No 216
>PHA03265 envelope glycoprotein D; Provisional
Probab=54.31 E-value=10 Score=29.95 Aligned_cols=14 Identities=29% Similarity=0.646 Sum_probs=6.6
Q ss_pred HHHHHHhhhhhhhc
Q 035703 41 LASYACIRVKANAN 54 (139)
Q Consensus 41 ~~~~~~~r~~~~~~ 54 (139)
.++|++.|+++..+
T Consensus 366 ~il~~~~rr~k~~~ 379 (402)
T PHA03265 366 VILYVCLRRKKELK 379 (402)
T ss_pred HHHHHHhhhhhhhh
Confidence 34455555554433
No 217
>PF05440 MtrB: Tetrahydromethanopterin S-methyltransferase subunit B; InterPro: IPR008690 The N5-methyltetrahydromethanopterin: coenzyme M (2.1.1.86 from EC) of Methanosarcina mazei Go1 is a membrane-associated, corrinoid-containing protein that uses a transmethylation reaction to drive an energy-conserving sodium ion pump [].; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=53.86 E-value=11 Score=24.19 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=13.9
Q ss_pred CccccchhhHHHHHHHHHHHHH
Q 035703 15 TTTTGVGLGYGIAIAVSILVLI 36 (139)
Q Consensus 15 ~~~~~~~~~~~i~i~l~~~~~i 36 (139)
-.++++|++|.+++++..++++
T Consensus 74 G~~tn~fyGf~igL~i~~lva~ 95 (97)
T PF05440_consen 74 GIFTNMFYGFIIGLVIAGLVAL 95 (97)
T ss_pred hhhhhHHHHHHHHHHHHHHHHH
Confidence 3456777777777766555443
No 218
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=53.84 E-value=48 Score=24.71 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035703 22 LGYGIAIAVSILVLISTIMLASYACIR 48 (139)
Q Consensus 22 ~~~~i~i~l~~~~~i~~~~~~~~~~~r 48 (139)
+..-+.|++.++.++.++++.+|...|
T Consensus 189 vilpvvIaliVitl~vf~LvgLyr~C~ 215 (259)
T PF07010_consen 189 VILPVVIALIVITLSVFTLVGLYRMCW 215 (259)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445555554444444444444333
No 219
>PHA02975 hypothetical protein; Provisional
Probab=53.70 E-value=35 Score=20.40 Aligned_cols=25 Identities=16% Similarity=0.041 Sum_probs=10.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 035703 21 GLGYGIAIAVSILVLISTIMLASYA 45 (139)
Q Consensus 21 ~~~~~i~i~l~~~~~i~~~~~~~~~ 45 (139)
+..+.+.+++.+.+++.+++.+.|.
T Consensus 41 ~~~~~~~ii~i~~v~~~~~~~flYL 65 (69)
T PHA02975 41 SSLSIILIIFIIFITCIAVFTFLYL 65 (69)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 220
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=53.65 E-value=31 Score=24.13 Aligned_cols=9 Identities=0% Similarity=-0.156 Sum_probs=3.7
Q ss_pred ccccchhhH
Q 035703 16 TTTGVGLGY 24 (139)
Q Consensus 16 ~~~~~~~~~ 24 (139)
++..+.+.+
T Consensus 8 ~~~~l~~~~ 16 (173)
T PRK13460 8 GLSLLDVNP 16 (173)
T ss_pred CCCccCCcH
Confidence 344444433
No 221
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=53.64 E-value=17 Score=24.53 Aligned_cols=21 Identities=19% Similarity=-0.037 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 035703 30 VSILVLISTIMLASYACIRVK 50 (139)
Q Consensus 30 l~~~~~i~~~~~~~~~~~r~~ 50 (139)
+++++++++....++++++.|
T Consensus 107 l~il~~i~is~~~~~~yr~~r 127 (139)
T PHA03099 107 VLVLVGIIITCCLLSVYRFTR 127 (139)
T ss_pred HHHHHHHHHHHHHHhhheeee
Confidence 333333333333344444333
No 222
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=53.47 E-value=18 Score=30.94 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=16.8
Q ss_pred cCCCCCCccccchhhHHHHHHHHHHHHH
Q 035703 9 VASTAATTTTGVGLGYGIAIAVSILVLI 36 (139)
Q Consensus 9 ~~~~~~~~~~~~~~~~~i~i~l~~~~~i 36 (139)
+.|.+...-.++|+..++++-++++++|
T Consensus 258 a~P~~~s~~~NlWII~gVlvPv~vV~~I 285 (684)
T PF12877_consen 258 AEPPAKSPPNNLWIIAGVLVPVLVVLLI 285 (684)
T ss_pred cCCCCCCCCCCeEEEehHhHHHHHHHHH
Confidence 3444555667888888886555444333
No 223
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=53.25 E-value=40 Score=20.36 Aligned_cols=24 Identities=29% Similarity=0.402 Sum_probs=9.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 035703 21 GLGYGIAIAVSILVLISTIMLASY 44 (139)
Q Consensus 21 ~~~~~i~i~l~~~~~i~~~~~~~~ 44 (139)
++.+.+.++..+.+++.+++.+.|
T Consensus 45 ~~~~~~~ii~ii~v~ii~~l~flY 68 (72)
T PF12575_consen 45 NFNWIILIISIIFVLIIVLLTFLY 68 (72)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Confidence 344334444444444444444343
No 224
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=53.06 E-value=4.8 Score=27.85 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=16.9
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHH
Q 035703 17 TTGVGLGYGIAIAVSILVLISTIMLASY 44 (139)
Q Consensus 17 ~~~~~~~~~i~i~l~~~~~i~~~~~~~~ 44 (139)
.++..+..+|+++|.+++++..+..+.+
T Consensus 5 ~gn~sv~i~igi~Ll~lLl~cgiGcvwh 32 (158)
T PF11770_consen 5 CGNTSVAISIGISLLLLLLLCGIGCVWH 32 (158)
T ss_pred ccCchHHHHHHHHHHHHHHHHhcceEEE
Confidence 3445566677777777666655555433
No 225
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=52.99 E-value=31 Score=25.90 Aligned_cols=38 Identities=13% Similarity=0.200 Sum_probs=18.8
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 035703 15 TTTTGVGLGYGIAIAVSILVLISTIMLASYACIRVKANA 53 (139)
Q Consensus 15 ~~~~~~~~~~~i~i~l~~~~~i~~~~~~~~~~~r~~~~~ 53 (139)
....+.|+.+...++.++ +++.++.+..++..|.|++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~-I~~~V~~~~~~~~~k~R~~~ 63 (247)
T COG1622 26 VAAEQRDLIILSTLLMLV-IVLPVIVLLVYFAWKYRASN 63 (247)
T ss_pred hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhcC
Confidence 445556666655555555 33333444444444444443
No 226
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=52.62 E-value=38 Score=18.49 Aligned_cols=14 Identities=21% Similarity=0.453 Sum_probs=6.2
Q ss_pred hHHHHHHHHHHHHH
Q 035703 23 GYGIAIAVSILVLI 36 (139)
Q Consensus 23 ~~~i~i~l~~~~~i 36 (139)
.|++.|++++++-+
T Consensus 8 iFsvvIil~If~~i 21 (49)
T PF11044_consen 8 IFSVVIILGIFAWI 21 (49)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 227
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=52.34 E-value=9.7 Score=21.34 Aligned_cols=23 Identities=35% Similarity=0.849 Sum_probs=12.9
Q ss_pred CCCCcccHHHHHHHHhCCCCCccc
Q 035703 97 DCHHCFHADCVDEWLRMSATCPLC 120 (139)
Q Consensus 97 ~C~H~fH~~Ci~~wl~~~~~CP~C 120 (139)
.|||.|... +..-......||.|
T Consensus 33 ~Cgh~w~~~-v~~R~~~~~~CP~C 55 (55)
T PF14311_consen 33 KCGHEWKAS-VNDRTRRGKGCPYC 55 (55)
T ss_pred CCCCeeEcc-HhhhccCCCCCCCC
Confidence 467765442 23223456679988
No 228
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=52.28 E-value=25 Score=25.27 Aligned_cols=11 Identities=18% Similarity=0.344 Sum_probs=4.1
Q ss_pred HHHHHHHHhhh
Q 035703 39 IMLASYACIRV 49 (139)
Q Consensus 39 ~~~~~~~~~r~ 49 (139)
..++.++..|.
T Consensus 28 ~~~l~~~~~k~ 38 (201)
T TIGR02866 28 AALLAYVVWKF 38 (201)
T ss_pred HHHHHHhhhhh
Confidence 33333333333
No 229
>PF15298 AJAP1_PANP_C: AJAP1/PANP C-terminus
Probab=51.19 E-value=7.4 Score=28.20 Aligned_cols=36 Identities=25% Similarity=0.408 Sum_probs=15.0
Q ss_pred ccchhhHHHHHHHHHHHHHHH--HHHHHHHHhhhhhhh
Q 035703 18 TGVGLGYGIAIAVSILVLIST--IMLASYACIRVKANA 53 (139)
Q Consensus 18 ~~~~~~~~i~i~l~~~~~i~~--~~~~~~~~~r~~~~~ 53 (139)
+++.....+-|-+.++++|.. ..+++.+|.-+..++
T Consensus 94 ~Glavh~~iTITvSlImViaAliTtlvlK~C~~~s~~~ 131 (205)
T PF15298_consen 94 SGLAVHQIITITVSLIMVIAALITTLVLKNCCAQSQNR 131 (205)
T ss_pred CCCCceEEEEEeeehhHHHHHhhhhhhhhhhhhhhccc
Confidence 345554444444443333322 334444454443333
No 230
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=51.15 E-value=14 Score=23.69 Aligned_cols=28 Identities=25% Similarity=0.505 Sum_probs=20.4
Q ss_pred CCCcccHHHHHHHHhCCCCCcccCCCCCC
Q 035703 98 CHHCFHADCVDEWLRMSATCPLCRSSPAT 126 (139)
Q Consensus 98 C~H~fH~~Ci~~wl~~~~~CP~CR~~v~~ 126 (139)
||+--|.--+.++... ..||.|+.++++
T Consensus 65 CGvC~~~LT~~EY~~~-~~Cp~C~spFNp 92 (105)
T COG4357 65 CGVCRKLLTRAEYGMC-GSCPYCQSPFNP 92 (105)
T ss_pred hhhhhhhhhHHHHhhc-CCCCCcCCCCCc
Confidence 8877777777776433 349999999874
No 231
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=50.76 E-value=4.3 Score=31.24 Aligned_cols=41 Identities=27% Similarity=0.527 Sum_probs=28.9
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
-+..|+-|.+-+-....++.- =+|+||.+|+. |-+|++.+.
T Consensus 91 fGTKCsaC~~GIpPtqVVRkA--qd~VYHl~CF~--------C~iC~R~L~ 131 (383)
T KOG4577|consen 91 FGTKCSACQEGIPPTQVVRKA--QDFVYHLHCFA--------CFICKRQLA 131 (383)
T ss_pred hCCcchhhcCCCChHHHHHHh--hcceeehhhhh--------hHhhhcccc
Confidence 345699998887754444432 67999999975 777777665
No 232
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=50.46 E-value=24 Score=32.05 Aligned_cols=51 Identities=16% Similarity=0.298 Sum_probs=34.0
Q ss_pred CCCccccCccccc---CCCceeecCCCCCcccHHHHHHH-HhCCCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYK---PKDSVRCIPDCHHCFHADCVDEW-LRMSATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~---~~~~~~~lp~C~H~fH~~Ci~~w-l~~~~~CP~CR~~v~ 125 (139)
+...|-||-|++. +|+.-.....|+--.|..|.+-= -+.++.||-|+..-.
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 5568999999875 33433323346666899998422 245668999998654
No 233
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=49.76 E-value=2.6 Score=32.33 Aligned_cols=38 Identities=21% Similarity=0.483 Sum_probs=28.3
Q ss_pred CCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCC
Q 035703 76 YGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMS 114 (139)
Q Consensus 76 ~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~ 114 (139)
..+|.+|++++..+....... |.-+||..|+-.|+...
T Consensus 214 ~rvC~~CF~el~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 251 (288)
T KOG1729|consen 214 IRVCDICFEELEKGARGDRED-SLPVFHGKCYPNWLTTG 251 (288)
T ss_pred ceecHHHHHHHhcccccchhh-ccccccccccccccccc
Confidence 338999999998644444444 55599999999998643
No 234
>PF02790 COX2_TM: Cytochrome C oxidase subunit II, transmembrane domain This family corresponds to chains b and o.; InterPro: IPR011759 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The enzyme complex consists of 3-4 subunits (prokaryotes) to up to 13 polypeptides (mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A) (see IPR001505 from INTERPRO), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c. The N-terminal domain of cytochrome C oxidase contains two transmembrane alpha-helices. ; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0009055 electron carrier activity, 0022900 electron transport chain, 0016021 integral to membrane; PDB: 3VRJ_C 2EIN_B 3AG3_B 2DYR_O 3AG1_B 2EIK_O 3ASN_B 1OCR_B 2EIJ_B 1OCC_O ....
Probab=49.75 E-value=35 Score=20.45 Aligned_cols=47 Identities=11% Similarity=0.104 Sum_probs=18.9
Q ss_pred CCCCCCccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035703 2 STANPPVVASTAATTTTGVGLGYGIAIAVSILVLISTIMLASYACIR 48 (139)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~l~~~~~i~~~~~~~~~~~r 48 (139)
|+-.+-.=|-++.+...++..-+.....+.+++++.+.++..+...+
T Consensus 2 ~~~~~~~f~d~~S~~~~~~~~l~~~~~~i~~~I~~~V~~~l~~~~~~ 48 (84)
T PF02790_consen 2 STWGQLNFQDPASPMMEEMDWLHDFVMIIMIFIFVFVFYFLIYFLFN 48 (84)
T ss_dssp --TT--S-S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCcCCCCCHHHHhHHHHHHHHHHHHhheeeeEeeeccccccc
Confidence 33333333334444445555545555555444444444444444444
No 235
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=49.72 E-value=10 Score=22.01 Aligned_cols=14 Identities=36% Similarity=0.904 Sum_probs=10.8
Q ss_pred CCCCcccCCCCCCC
Q 035703 114 SATCPLCRSSPATP 127 (139)
Q Consensus 114 ~~~CP~CR~~v~~~ 127 (139)
...||+|..++...
T Consensus 39 ~p~CPlC~s~M~~~ 52 (59)
T PF14169_consen 39 EPVCPLCKSPMVSG 52 (59)
T ss_pred CccCCCcCCccccc
Confidence 35799999988744
No 236
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=49.48 E-value=5.5 Score=30.62 Aligned_cols=12 Identities=17% Similarity=-0.136 Sum_probs=0.0
Q ss_pred CccccchhhHHH
Q 035703 15 TTTTGVGLGYGI 26 (139)
Q Consensus 15 ~~~~~~~~~~~i 26 (139)
..+++.++.-.+
T Consensus 139 ~s~~d~yL~T~I 150 (290)
T PF05454_consen 139 SSFSDDYLHTFI 150 (290)
T ss_dssp ------------
T ss_pred cccccchHHHHH
Confidence 344555555444
No 237
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=49.17 E-value=15 Score=21.39 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=21.9
Q ss_pred CccccCcccccC--CCceeecCCCCCcccHHHHHH
Q 035703 77 GPCSICLCDYKP--KDSVRCIPDCHHCFHADCVDE 109 (139)
Q Consensus 77 ~~C~ICl~~~~~--~~~~~~lp~C~H~fH~~Ci~~ 109 (139)
..|+.|-..... .......+.||+.+|.+---.
T Consensus 29 q~C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD~naA 63 (69)
T PF07282_consen 29 QTCPRCGHRNKKRRSGRVFTCPNCGFEMDRDVNAA 63 (69)
T ss_pred cCccCcccccccccccceEEcCCCCCEECcHHHHH
Confidence 359999877665 344445566888888765443
No 238
>PF15179 Myc_target_1: Myc target protein 1
Probab=49.00 E-value=53 Score=23.65 Aligned_cols=15 Identities=13% Similarity=0.452 Sum_probs=8.2
Q ss_pred ccchhhHHHHHHHHH
Q 035703 18 TGVGLGYGIAIAVSI 32 (139)
Q Consensus 18 ~~~~~~~~i~i~l~~ 32 (139)
.++.+.|.+.+++++
T Consensus 19 ~~lIlaF~vSm~iGL 33 (197)
T PF15179_consen 19 EDLILAFCVSMAIGL 33 (197)
T ss_pred hhHHHHHHHHHHHHH
Confidence 445555555655553
No 239
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=48.17 E-value=13 Score=27.81 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=18.3
Q ss_pred CccccCcccccCCCceeecCCCCCcc
Q 035703 77 GPCSICLCDYKPKDSVRCIPDCHHCF 102 (139)
Q Consensus 77 ~~C~ICl~~~~~~~~~~~lp~C~H~f 102 (139)
..||+|.+.+...+.-...+ .||.|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~-~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICP-QNHQF 27 (272)
T ss_pred ccCCCCCcchhcCCCEEEcC-CCCCC
Confidence 46999999997655544455 67888
No 240
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=48.17 E-value=53 Score=19.81 Aligned_cols=19 Identities=11% Similarity=0.186 Sum_probs=7.9
Q ss_pred ccchhhHHHHHHHHHHHHH
Q 035703 18 TGVGLGYGIAIAVSILVLI 36 (139)
Q Consensus 18 ~~~~~~~~i~i~l~~~~~i 36 (139)
..-.+.+.+++++|+++-+
T Consensus 56 P~~~lil~l~~~~Gl~lgi 74 (82)
T PF13807_consen 56 PKRALILALGLFLGLILGI 74 (82)
T ss_pred CcHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333
No 241
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=48.01 E-value=16 Score=24.06 Aligned_cols=8 Identities=13% Similarity=0.434 Sum_probs=3.7
Q ss_pred ccHHHHHH
Q 035703 102 FHADCVDE 109 (139)
Q Consensus 102 fH~~Ci~~ 109 (139)
|.+.-|..
T Consensus 74 v~r~AI~~ 81 (113)
T PRK06531 74 FELAAIKR 81 (113)
T ss_pred EEhhHhhh
Confidence 44444443
No 242
>PRK01741 cell division protein ZipA; Provisional
Probab=47.61 E-value=24 Score=27.67 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 035703 26 IAIAVSILVLISTIMLASYACIRVKAN 52 (139)
Q Consensus 26 i~i~l~~~~~i~~~~~~~~~~~r~~~~ 52 (139)
|.|+|++++++.++...+|..+|-|.+
T Consensus 6 iliILg~lal~~Lv~hgiWsnRrEKSq 32 (332)
T PRK01741 6 ILIILGILALVALVAHGIWSNRREKSQ 32 (332)
T ss_pred hHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 456666767766666666666655543
No 243
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=47.54 E-value=9.7 Score=25.95 Aligned_cols=22 Identities=27% Similarity=0.647 Sum_probs=17.1
Q ss_pred cCCCCCcccHHHHHHHHhCCCCCcccCCCC
Q 035703 95 IPDCHHCFHADCVDEWLRMSATCPLCRSSP 124 (139)
Q Consensus 95 lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v 124 (139)
.++|||+|+- -+..||.|..+.
T Consensus 32 C~~CG~v~~P--------Pr~~Cp~C~~~~ 53 (140)
T COG1545 32 CKKCGRVYFP--------PRAYCPKCGSET 53 (140)
T ss_pred cCCCCeEEcC--------CcccCCCCCCCC
Confidence 3469999876 566799999884
No 244
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=47.49 E-value=16 Score=31.97 Aligned_cols=27 Identities=33% Similarity=0.762 Sum_probs=20.5
Q ss_pred cCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 95 IPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 95 lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
.|.|.|.-|..=|.. .+.||+|+..+.
T Consensus 1159 C~~CkH~a~~~EIs~----y~~CPLCHs~~~ 1185 (1189)
T KOG2041|consen 1159 CPRCKHRAHQHEISK----YNCCPLCHSMES 1185 (1189)
T ss_pred ccccccccccccccc----cccCccccChhh
Confidence 456999998876653 468999988754
No 245
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=47.47 E-value=12 Score=23.52 Aligned_cols=37 Identities=16% Similarity=0.336 Sum_probs=28.2
Q ss_pred CCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 76 YGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 76 ~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
...|.-|...+..-|.+. |-.|+..+..|..|++++.
T Consensus 33 rS~C~~C~~~L~~~~lIP-------------i~S~l~lrGrCr~C~~~I~ 69 (92)
T PF06750_consen 33 RSHCPHCGHPLSWWDLIP-------------ILSYLLLRGRCRYCGAPIP 69 (92)
T ss_pred CCcCcCCCCcCcccccch-------------HHHHHHhCCCCcccCCCCC
Confidence 346888888877655443 4569988889999999886
No 246
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=47.38 E-value=48 Score=20.95 Aligned_cols=21 Identities=14% Similarity=-0.024 Sum_probs=11.9
Q ss_pred CCCCccCCCCCCccccchhhH
Q 035703 4 ANPPVVASTAATTTTGVGLGY 24 (139)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~ 24 (139)
..|+.+|++..-..+.+++..
T Consensus 21 ~~p~~~p~ss~~~ws~vv~v~ 41 (91)
T PF01708_consen 21 RVPTAAPSSSGLPWSRVVEVA 41 (91)
T ss_pred CCCCCCCCCCCCcceeEeeee
Confidence 345556666665666666543
No 247
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=47.25 E-value=29 Score=26.70 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=10.6
Q ss_pred CCccccchhhHHHHHHHHHHHHH
Q 035703 14 ATTTTGVGLGYGIAIAVSILVLI 36 (139)
Q Consensus 14 ~~~~~~~~~~~~i~i~l~~~~~i 36 (139)
...+.--|+...+.+++.++++|
T Consensus 255 ~aaF~Pcgiaalvllil~vvlii 277 (295)
T TIGR01478 255 TSTFLPYGIAALVLIILTVVLII 277 (295)
T ss_pred HHhhcccHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444
No 248
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=47.05 E-value=5.1 Score=22.70 Aligned_cols=20 Identities=25% Similarity=0.620 Sum_probs=14.4
Q ss_pred ceeecCCCCCcccHHHHHHH
Q 035703 91 SVRCIPDCHHCFHADCVDEW 110 (139)
Q Consensus 91 ~~~~lp~C~H~fH~~Ci~~w 110 (139)
....-+.|||.|+..|...|
T Consensus 39 ~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 39 NRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred CeeECCCCCCeECCCCCCcC
Confidence 34445458999998888777
No 249
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=46.84 E-value=11 Score=26.19 Aligned_cols=43 Identities=26% Similarity=0.478 Sum_probs=27.7
Q ss_pred ccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 80 SICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 80 ~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
.||+.--...+..-..|.=.+.||.+|-.+-+. .||.|..++.
T Consensus 8 qiC~NGH~~t~~~~~~p~~~~~fC~kCG~~tI~---~Cp~C~~~Ir 50 (158)
T PF10083_consen 8 QICLNGHVITDSYDKNPELREKFCSKCGAKTIT---SCPNCSTPIR 50 (158)
T ss_pred HHccCccccccccccCchHHHHHHHHhhHHHHH---HCcCCCCCCC
Confidence 366655444444433433456799999877544 5999999875
No 250
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=46.79 E-value=34 Score=27.13 Aligned_cols=34 Identities=15% Similarity=0.019 Sum_probs=22.9
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 035703 18 TGVGLGYGIAIAVSILVLISTIMLASYACIRVKA 51 (139)
Q Consensus 18 ~~~~~~~~i~i~l~~~~~i~~~~~~~~~~~r~~~ 51 (139)
....+..++.-++.+++++.++++++.++++.+-
T Consensus 308 ~~t~IiaSiIAIvvIVLIMvIIYLILRYRRKKKM 341 (353)
T TIGR01477 308 YYTPIIASIIAILIIVLIMVIIYLILRYRRKKKM 341 (353)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence 3456777777777776677777777777666553
No 251
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=46.72 E-value=23 Score=31.97 Aligned_cols=51 Identities=16% Similarity=0.302 Sum_probs=34.4
Q ss_pred CCCccccCccccc---CCCceeecCCCCCcccHHHHHHHH-hCCCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYK---PKDSVRCIPDCHHCFHADCVDEWL-RMSATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~---~~~~~~~lp~C~H~fH~~Ci~~wl-~~~~~CP~CR~~v~ 125 (139)
+...|-||-|+.. +|+.-.....|+--.|..|.+-=. +.++.||.|+..-.
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 5667999999875 334333333477779999984322 34568999998654
No 252
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=46.34 E-value=20 Score=23.18 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=27.3
Q ss_pred CccccCcccccCCCceeecCCCCCcccHHHHHHHHh
Q 035703 77 GPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLR 112 (139)
Q Consensus 77 ~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~ 112 (139)
..|.||-.++-.|+.-..+.+ -.-|..|+..=..
T Consensus 3 WkC~iCg~~I~~gqlFTF~~k--G~VH~~C~~~~~~ 36 (101)
T PF09943_consen 3 WKCYICGKPIYEGQLFTFTKK--GPVHYECFREKAS 36 (101)
T ss_pred eEEEecCCeeeecceEEEecC--CcEeHHHHHHHHh
Confidence 369999999999988877764 5689999887543
No 253
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=45.96 E-value=12 Score=30.89 Aligned_cols=44 Identities=23% Similarity=0.553 Sum_probs=24.6
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCCCCCcc
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPATPLAE 130 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~~~~~~ 130 (139)
+...|+-||+++...+.-.....|.. +| ..||.|...+.....+
T Consensus 25 ~~~yCp~CL~~~p~~e~~~~~nrC~r----~C--------f~CP~C~~~L~~~~~~ 68 (483)
T PF05502_consen 25 DSYYCPNCLFEVPSSEARSEKNRCSR----NC--------FDCPICFSPLSVRASD 68 (483)
T ss_pred ceeECccccccCChhhheeccceecc----cc--------ccCCCCCCcceeEecc
Confidence 45568999888765442111111431 22 2589998887644333
No 254
>PTZ00046 rifin; Provisional
Probab=45.73 E-value=36 Score=27.08 Aligned_cols=35 Identities=17% Similarity=0.098 Sum_probs=23.1
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 035703 17 TTGVGLGYGIAIAVSILVLISTIMLASYACIRVKA 51 (139)
Q Consensus 17 ~~~~~~~~~i~i~l~~~~~i~~~~~~~~~~~r~~~ 51 (139)
..+-.+.+++.-++.+++++.++++++.++++.+-
T Consensus 312 ~~~taIiaSiiAIvVIVLIMvIIYLILRYRRKKKM 346 (358)
T PTZ00046 312 ILQTAIIASIVAIVVIVLIMVIIYLILRYRRKKKM 346 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence 34456777777666666666777777777665543
No 255
>PF07245 Phlebovirus_G2: Phlebovirus glycoprotein G2; InterPro: IPR009878 This domain is found in several Phlebovirus glycoprotein G2 sequences. Members of the Bunyaviridae family acquire an envelope by budding through the lipid bilayer of the Golgi complex. The budding compartment is thought to be determined by the accumulation of the two heterodimeric membrane glycoproteins G1 and G2 in the Golgi [].
Probab=45.62 E-value=29 Score=28.87 Aligned_cols=6 Identities=17% Similarity=0.313 Sum_probs=2.3
Q ss_pred Cccccc
Q 035703 15 TTTTGV 20 (139)
Q Consensus 15 ~~~~~~ 20 (139)
++++++
T Consensus 454 ~w~sgl 459 (507)
T PF07245_consen 454 NWLSGL 459 (507)
T ss_pred HHHhHH
Confidence 334433
No 256
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=45.60 E-value=18 Score=28.22 Aligned_cols=21 Identities=19% Similarity=0.485 Sum_probs=11.0
Q ss_pred CCCcccCCCCCCCCcccCCCc
Q 035703 115 ATCPLCRSSPATPLAEVVPLA 135 (139)
Q Consensus 115 ~~CP~CR~~v~~~~~~~~~~~ 135 (139)
.+|--||-.+...-+++.|+.
T Consensus 76 gsC~QCkv~v~~ggge~LpTe 96 (410)
T COG2871 76 GSCGQCKVRVKKGGGEILPTE 96 (410)
T ss_pred ccccccEEEEecCCCccCcch
Confidence 345555555555555555543
No 257
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=44.94 E-value=33 Score=25.90 Aligned_cols=13 Identities=8% Similarity=-0.212 Sum_probs=5.2
Q ss_pred ccccchhhHHHHH
Q 035703 16 TTTGVGLGYGIAI 28 (139)
Q Consensus 16 ~~~~~~~~~~i~i 28 (139)
.-...||.|.+.+
T Consensus 197 ~~~~g~f~wl~i~ 209 (268)
T PF09451_consen 197 SGGWGFFTWLFII 209 (268)
T ss_pred cccccHHHHHHHH
Confidence 3333444444433
No 258
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.90 E-value=6.1 Score=32.06 Aligned_cols=39 Identities=15% Similarity=0.336 Sum_probs=27.3
Q ss_pred CCCccccCcccccCCCceee----cCCCCCcccHHHHHHHHhC
Q 035703 75 DYGPCSICLCDYKPKDSVRC----IPDCHHCFHADCVDEWLRM 113 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~----lp~C~H~fH~~Ci~~wl~~ 113 (139)
+...||.|....+.++.... ...|+|.||..|+..|-..
T Consensus 225 ntk~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h 267 (444)
T KOG1815|consen 225 NTKECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDH 267 (444)
T ss_pred cCccCCCcccchhccCCccccccccCCcCCeeceeeecccccc
Confidence 33449999998886652221 1239999999998888654
No 259
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=44.82 E-value=59 Score=20.00 Aligned_cols=13 Identities=31% Similarity=0.422 Sum_probs=6.2
Q ss_pred hHHHHHHHHHHHH
Q 035703 23 GYGIAIAVSILVL 35 (139)
Q Consensus 23 ~~~i~i~l~~~~~ 35 (139)
.++|++++.++.+
T Consensus 12 v~GM~~VF~fL~l 24 (82)
T TIGR01195 12 VLGMGIVFLFLSL 24 (82)
T ss_pred HHHHHHHHHHHHH
Confidence 3445555554444
No 260
>PRK03427 cell division protein ZipA; Provisional
Probab=44.63 E-value=42 Score=26.40 Aligned_cols=27 Identities=15% Similarity=0.330 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 035703 26 IAIAVSILVLISTIMLASYACIRVKAN 52 (139)
Q Consensus 26 i~i~l~~~~~i~~~~~~~~~~~r~~~~ 52 (139)
|.|++|.+++|.+++-.+|..+|.+..
T Consensus 8 iLivvGAIAIiAlL~HGlWtsRKers~ 34 (333)
T PRK03427 8 ILIIVGAIAIIALLVHGFWTSRKERSS 34 (333)
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccc
Confidence 456666666666666666666655533
No 261
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=44.49 E-value=22 Score=28.24 Aligned_cols=25 Identities=12% Similarity=0.222 Sum_probs=15.8
Q ss_pred CCCCCccccCcccccCCCceeecCCCC
Q 035703 73 TNDYGPCSICLCDYKPKDSVRCIPDCH 99 (139)
Q Consensus 73 ~~~~~~C~ICl~~~~~~~~~~~lp~C~ 99 (139)
...++.|++|-+... |-....+. |.
T Consensus 12 edl~ElCPVCGDkVS-GYHYGLLT-CE 36 (475)
T KOG4218|consen 12 EDLGELCPVCGDKVS-GYHYGLLT-CE 36 (475)
T ss_pred cccccccccccCccc-cceeeeee-hh
Confidence 346678999988866 34444454 54
No 262
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=44.29 E-value=28 Score=16.35 Aligned_cols=9 Identities=11% Similarity=0.512 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 035703 24 YGIAIAVSI 32 (139)
Q Consensus 24 ~~i~i~l~~ 32 (139)
|.+.+++.+
T Consensus 6 FalivVLFI 14 (24)
T PF09680_consen 6 FALIVVLFI 14 (24)
T ss_pred chhHHHHHH
Confidence 333333333
No 263
>PLN02248 cellulose synthase-like protein
Probab=44.28 E-value=28 Score=31.77 Aligned_cols=29 Identities=21% Similarity=0.562 Sum_probs=25.3
Q ss_pred CCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 97 DCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 97 ~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
.|++..|.+|...-++....||-|+.+-.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (1135)
T PLN02248 149 ECGFKICRDCYIDAVKSGGICPGCKEPYK 177 (1135)
T ss_pred cccchhHHhHhhhhhhcCCCCCCCccccc
Confidence 38899999999999988889999998763
No 264
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=44.24 E-value=50 Score=22.39 Aligned_cols=9 Identities=11% Similarity=0.117 Sum_probs=3.4
Q ss_pred hHHHHHHHH
Q 035703 23 GYGIAIAVS 31 (139)
Q Consensus 23 ~~~i~i~l~ 31 (139)
..+.-++++
T Consensus 20 a~GWwll~~ 28 (146)
T PF14316_consen 20 APGWWLLLA 28 (146)
T ss_pred cHHHHHHHH
Confidence 333333333
No 265
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=43.93 E-value=14 Score=31.58 Aligned_cols=27 Identities=37% Similarity=0.974 Sum_probs=20.8
Q ss_pred CCCCcccHHHHHHHHhC-----CCCCcccCCC
Q 035703 97 DCHHCFHADCVDEWLRM-----SATCPLCRSS 123 (139)
Q Consensus 97 ~C~H~fH~~Ci~~wl~~-----~~~CP~CR~~ 123 (139)
.|+-.||..|+..|+.. .-.||-||.-
T Consensus 40 ~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvC 71 (694)
T KOG4443|consen 40 DCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVC 71 (694)
T ss_pred hhcccCCcchhhHHHhHHHhcCCcccCCceee
Confidence 48999999999999843 2358888753
No 266
>PF15353 HECA: Headcase protein family homologue
Probab=43.63 E-value=16 Score=23.74 Aligned_cols=14 Identities=21% Similarity=0.835 Sum_probs=12.1
Q ss_pred CCCcccHHHHHHHH
Q 035703 98 CHHCFHADCVDEWL 111 (139)
Q Consensus 98 C~H~fH~~Ci~~wl 111 (139)
.++..|.+|++.|=
T Consensus 40 ~~~~MH~~CF~~wE 53 (107)
T PF15353_consen 40 FGQYMHRECFEKWE 53 (107)
T ss_pred CCCchHHHHHHHHH
Confidence 56899999999993
No 267
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=43.41 E-value=51 Score=21.09 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=9.6
Q ss_pred ccchhhHHHHHHHHHHHHHH
Q 035703 18 TGVGLGYGIAIAVSILVLIS 37 (139)
Q Consensus 18 ~~~~~~~~i~i~l~~~~~i~ 37 (139)
++.|=.++|.+.+.++++++
T Consensus 46 sh~WRN~GIli~f~i~f~~~ 65 (103)
T PF06422_consen 46 SHRWRNFGILIAFWIFFIVL 65 (103)
T ss_pred cchhhhHHHHHHHHHHHHHH
Confidence 34455555555554444443
No 268
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=43.25 E-value=60 Score=20.38 Aligned_cols=9 Identities=11% Similarity=0.183 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 035703 28 IAVSILVLI 36 (139)
Q Consensus 28 i~l~~~~~i 36 (139)
|++++++++
T Consensus 6 iv~~~~~v~ 14 (87)
T PF10883_consen 6 IVGGVGAVV 14 (87)
T ss_pred HHHHHHHHH
Confidence 333333333
No 269
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=43.10 E-value=3.6 Score=27.10 Aligned_cols=15 Identities=13% Similarity=0.456 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhh
Q 035703 37 STIMLASYACIRVKA 51 (139)
Q Consensus 37 ~~~~~~~~~~~r~~~ 51 (139)
+++++..|+++|+..
T Consensus 38 iLLliGCWYckRRSG 52 (118)
T PF14991_consen 38 ILLLIGCWYCKRRSG 52 (118)
T ss_dssp ---------------
T ss_pred HHHHHhheeeeecch
Confidence 334445566555543
No 270
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=42.79 E-value=16 Score=24.04 Aligned_cols=33 Identities=21% Similarity=0.462 Sum_probs=20.8
Q ss_pred CCCccccCcccccC--CCceeecCCCCCcccHHHHH
Q 035703 75 DYGPCSICLCDYKP--KDSVRCIPDCHHCFHADCVD 108 (139)
Q Consensus 75 ~~~~C~ICl~~~~~--~~~~~~lp~C~H~fH~~Ci~ 108 (139)
++..|.+|...|.- +....-. .|+|.++.+|-.
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~-~C~~~VC~~C~~ 87 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCV-DCKHRVCKKCGV 87 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEET-TTTEEEETTSEE
T ss_pred CCcchhhhCCcccccCCCCCcCC-cCCccccCccCC
Confidence 56689999987652 2233333 499999998844
No 271
>CHL00038 psbL photosystem II protein L
Probab=42.65 E-value=51 Score=17.16 Aligned_cols=14 Identities=14% Similarity=0.306 Sum_probs=6.0
Q ss_pred ccccchhhHHHHHH
Q 035703 16 TTTGVGLGYGIAIA 29 (139)
Q Consensus 16 ~~~~~~~~~~i~i~ 29 (139)
-+..-++-|++.++
T Consensus 12 ELNRTSLy~GLLli 25 (38)
T CHL00038 12 ELNRTSLYWGLLLI 25 (38)
T ss_pred chhhhhHHHHHHHH
Confidence 33444444444433
No 272
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=42.60 E-value=21 Score=22.79 Aligned_cols=34 Identities=29% Similarity=0.633 Sum_probs=22.2
Q ss_pred CCCccccCcccccCCCceee-cCCCCCcccHHHHHHH
Q 035703 75 DYGPCSICLCDYKPKDSVRC-IPDCHHCFHADCVDEW 110 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~-lp~C~H~fH~~Ci~~w 110 (139)
....|.||... .|..+.- -++|...||..|....
T Consensus 54 ~~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 54 FKLKCSICGKS--GGACIKCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred cCCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHHHC
Confidence 45679999887 3322221 1248889999998653
No 273
>PF15116 CD52: CAMPATH-1 antigen
Probab=42.04 E-value=19 Score=19.48 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=13.1
Q ss_pred CCCCCccCCCCCCccccchhhHHHHH
Q 035703 3 TANPPVVASTAATTTTGVGLGYGIAI 28 (139)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~i~i 28 (139)
+++++-+.+++...+++.++.++++-
T Consensus 10 ttk~~ks~apA~s~lggg~~LfFlaN 35 (44)
T PF15116_consen 10 TTKKPKSGAPALSSLGGGSFLFFLAN 35 (44)
T ss_pred cccCCCCCCccccccCCceEEeehhh
Confidence 34444444455555665555554433
No 274
>PF08135 EPV_E5: Major transforming protein E5 family; InterPro: IPR012555 This family consists of the major transforming proteins (E5) of the bovine papilloma virus (BPV). The equine sarcoid is one of the most common dermatological lesion in equids. It is a benign, locally invasive dermal fibroblastic lesion and studies have shown an association of the lesions with BPV. E5 is a short hydrophobic membrane protein localising to the Golgi apparatus and other intracellular membranes. It binds to and constitutively activates the platelet-derived growth factor-beta in transformed cells. This stimulation activates a receptor signalling cascade which results in an intracellular growth stimulatory signal [].
Probab=41.85 E-value=57 Score=17.47 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=10.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHH
Q 035703 20 VGLGYGIAIAVSILVLISTIMLASY 44 (139)
Q Consensus 20 ~~~~~~i~i~l~~~~~i~~~~~~~~ 44 (139)
.|+-..+++..+.-.++.+.+++++
T Consensus 4 ~glllflgl~~~lQL~LL~FlL~fF 28 (44)
T PF08135_consen 4 GGLLLFLGLTFALQLLLLVFLLFFF 28 (44)
T ss_pred ceeHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443333333333333
No 275
>COG3115 ZipA Cell division protein [Cell division and chromosome partitioning]
Probab=41.73 E-value=38 Score=26.31 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 035703 26 IAIAVSILVLISTIMLASYACIRVK 50 (139)
Q Consensus 26 i~i~l~~~~~i~~~~~~~~~~~r~~ 50 (139)
|.|++++++++.+++-.+|..+|.+
T Consensus 7 ILIIvG~IAIiaLLvhGlWtsRkE~ 31 (324)
T COG3115 7 ILIIVGAIAIIALLVHGLWTSRKER 31 (324)
T ss_pred HHHHHHHHHHHHHHHhhhhhcchhh
Confidence 4455555566665555555544443
No 276
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=41.70 E-value=58 Score=17.50 Aligned_cols=9 Identities=56% Similarity=0.700 Sum_probs=4.0
Q ss_pred cchhhHHHH
Q 035703 19 GVGLGYGIA 27 (139)
Q Consensus 19 ~~~~~~~i~ 27 (139)
.+|..|++.
T Consensus 7 yVW~sYg~t 15 (45)
T TIGR03141 7 YVWLAYGIT 15 (45)
T ss_pred HHHHHHHHH
Confidence 344444443
No 277
>PRK06287 cobalt transport protein CbiN; Validated
Probab=41.60 E-value=57 Score=21.16 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=14.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 035703 21 GLGYGIAIAVSILVLISTIMLASYA 45 (139)
Q Consensus 21 ~~~~~i~i~l~~~~~i~~~~~~~~~ 45 (139)
.+++.++-+++.++++.+.+.+.+.
T Consensus 76 ~~g~ilsgiiGv~i~l~l~~~~~~~ 100 (107)
T PRK06287 76 KIGEIIAMVIGTLLVLALAYGVGKI 100 (107)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777765555555444333
No 278
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.24 E-value=15 Score=23.26 Aligned_cols=12 Identities=33% Similarity=1.079 Sum_probs=10.5
Q ss_pred cccHHHHHHHHh
Q 035703 101 CFHADCVDEWLR 112 (139)
Q Consensus 101 ~fH~~Ci~~wl~ 112 (139)
-||.+|+..|+.
T Consensus 42 gFCRNCLs~Wy~ 53 (104)
T COG3492 42 GFCRNCLSNWYR 53 (104)
T ss_pred HHHHHHHHHHHH
Confidence 399999999984
No 279
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=41.15 E-value=9.6 Score=35.53 Aligned_cols=49 Identities=24% Similarity=0.539 Sum_probs=37.0
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCC----CCcccCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSA----TCPLCRSSP 124 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~----~CP~CR~~v 124 (139)
....|.+|....+..+.+...- |.-.||..|++.-+.... .||-||..-
T Consensus 1107 ~~~~c~~cr~k~~~~~m~lc~~-c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1107 VNALCKVCRRKKQDEKMLLCDE-CLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred chhhhhhhhhcccchhhhhhHh-hhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 5567999998877655444443 888999999999886444 799998764
No 280
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=41.12 E-value=14 Score=17.58 Aligned_cols=9 Identities=33% Similarity=1.014 Sum_probs=7.0
Q ss_pred CCcccCCCC
Q 035703 116 TCPLCRSSP 124 (139)
Q Consensus 116 ~CP~CR~~v 124 (139)
.||+|.+.+
T Consensus 3 ~CPiC~~~v 11 (26)
T smart00734 3 QCPVCFREV 11 (26)
T ss_pred cCCCCcCcc
Confidence 589997776
No 281
>PF14851 FAM176: FAM176 family
Probab=40.69 E-value=1e+02 Score=21.47 Aligned_cols=29 Identities=3% Similarity=-0.054 Sum_probs=15.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 035703 21 GLGYGIAIAVSILVLISTIMLASYACIRV 49 (139)
Q Consensus 21 ~~~~~i~i~l~~~~~i~~~~~~~~~~~r~ 49 (139)
.-.+++.++.++.+.+++.+.++......
T Consensus 19 PE~~aLYFv~gVC~GLlLtLcllV~risc 47 (153)
T PF14851_consen 19 PERFALYFVSGVCAGLLLTLCLLVIRISC 47 (153)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 33455555555555555555555555555
No 282
>PF11157 DUF2937: Protein of unknown function (DUF2937); InterPro: IPR022584 This family of proteins with unknown function appears to be found mainly in Proteobacteria.
Probab=40.56 E-value=66 Score=22.59 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=12.2
Q ss_pred ccccchhhHHHHHHHHHHHHHH
Q 035703 16 TTTGVGLGYGIAIAVSILVLIS 37 (139)
Q Consensus 16 ~~~~~~~~~~i~i~l~~~~~i~ 37 (139)
.++..++.|++..++...+++-
T Consensus 130 plt~~gi~~g~vg~l~~~~l~~ 151 (167)
T PF11157_consen 130 PLTPEGIVFGLVGALLGALLVE 151 (167)
T ss_pred cCCHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666555554443
No 283
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=39.95 E-value=20 Score=19.59 Aligned_cols=35 Identities=23% Similarity=0.438 Sum_probs=23.1
Q ss_pred CCCCccccCcccc--cCCCceeecCCCCCcccHHHHHH
Q 035703 74 NDYGPCSICLCDY--KPKDSVRCIPDCHHCFHADCVDE 109 (139)
Q Consensus 74 ~~~~~C~ICl~~~--~~~~~~~~lp~C~H~fH~~Ci~~ 109 (139)
.....|..|-+.+ .......-.. |+-..|++|++.
T Consensus 9 ~~~~~C~~C~~~i~g~~~~g~~C~~-C~~~~H~~C~~~ 45 (53)
T PF00130_consen 9 SKPTYCDVCGKFIWGLGKQGYRCSW-CGLVCHKKCLSK 45 (53)
T ss_dssp SSTEB-TTSSSBECSSSSCEEEETT-TT-EEETTGGCT
T ss_pred CCCCCCcccCcccCCCCCCeEEECC-CCChHhhhhhhh
Confidence 4556799998888 3334454454 999999999764
No 284
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=39.84 E-value=49 Score=24.62 Aligned_cols=18 Identities=11% Similarity=-0.047 Sum_probs=10.9
Q ss_pred cchhhHHHHHHHHHHHHH
Q 035703 19 GVGLGYGIAIAVSILVLI 36 (139)
Q Consensus 19 ~~~~~~~i~i~l~~~~~i 36 (139)
..||.+.++|++.+.++.
T Consensus 215 s~wf~~~miI~v~~sFVs 232 (244)
T KOG2678|consen 215 SYWFYITMIIFVILSFVS 232 (244)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 567777776666554443
No 285
>PHA02692 hypothetical protein; Provisional
Probab=39.80 E-value=67 Score=19.27 Aligned_cols=7 Identities=0% Similarity=0.259 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 035703 24 YGIAIAV 30 (139)
Q Consensus 24 ~~i~i~l 30 (139)
+...+++
T Consensus 45 ~~~~ii~ 51 (70)
T PHA02692 45 WTTVFLI 51 (70)
T ss_pred hHHHHHH
Confidence 3333333
No 286
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=39.50 E-value=15 Score=27.47 Aligned_cols=41 Identities=22% Similarity=0.392 Sum_probs=29.5
Q ss_pred CCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCC--CCcc
Q 035703 76 YGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSA--TCPL 119 (139)
Q Consensus 76 ~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~--~CP~ 119 (139)
+..|+|-+.++..+ + ....|+|.|-.+-|...++... .||.
T Consensus 189 ~nrCpitl~p~~~p--i-ls~kcnh~~e~D~I~~~lq~~~trvcp~ 231 (275)
T COG5627 189 SNRCPITLNPDFYP--I-LSSKCNHKPEMDLINKKLQVECTRVCPR 231 (275)
T ss_pred cccCCcccCcchhH--H-HHhhhcccccHHHHHHHhcCCceeecch
Confidence 35699988876653 2 2335999999999999998444 4663
No 287
>PLN02400 cellulose synthase
Probab=39.46 E-value=28 Score=31.62 Aligned_cols=51 Identities=20% Similarity=0.354 Sum_probs=33.4
Q ss_pred CCCccccCccccc---CCCceeecCCCCCcccHHHHHHH-HhCCCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYK---PKDSVRCIPDCHHCFHADCVDEW-LRMSATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~---~~~~~~~lp~C~H~fH~~Ci~~w-l~~~~~CP~CR~~v~ 125 (139)
....|-||-|++. +|+.-.....|+---|..|.+-= -+.++.||-||..-.
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 5568999999875 33433222346666899998421 134568999998654
No 288
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=39.16 E-value=2.8 Score=23.50 Aligned_cols=39 Identities=23% Similarity=0.622 Sum_probs=20.4
Q ss_pred CCccccCcccccCCCceeecCCCCCc--ccHHHHHHHHhCCCCCcccCCCCC
Q 035703 76 YGPCSICLCDYKPKDSVRCIPDCHHC--FHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 76 ~~~C~ICl~~~~~~~~~~~lp~C~H~--fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
...||.|-+++...+ | +.|+ .|.. + .+...||+|...+.
T Consensus 2 ~f~CP~C~~~~~~~~----L--~~H~~~~H~~--~---~~~v~CPiC~~~~~ 42 (54)
T PF05605_consen 2 SFTCPYCGKGFSESS----L--VEHCEDEHRS--E---SKNVVCPICSSRVT 42 (54)
T ss_pred CcCCCCCCCccCHHH----H--HHHHHhHCcC--C---CCCccCCCchhhhh
Confidence 356888887655321 2 3343 2221 0 12346999987543
No 289
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=38.85 E-value=9.6 Score=29.61 Aligned_cols=42 Identities=19% Similarity=0.431 Sum_probs=25.6
Q ss_pred CCCccccCcccccC-------CCceeecCCCCCcccHHHHHHHHhCCCCCcccCC
Q 035703 75 DYGPCSICLCDYKP-------KDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRS 122 (139)
Q Consensus 75 ~~~~C~ICl~~~~~-------~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~ 122 (139)
....||+|-..-.. .+..+ |..|.-|-.+|-..+..||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~R------yL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLR------YLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCce------EEEcCCCCCcccccCccCCCCCC
Confidence 45679999765321 12222 33455566677667778999975
No 290
>PLN02195 cellulose synthase A
Probab=38.68 E-value=44 Score=30.09 Aligned_cols=51 Identities=12% Similarity=0.259 Sum_probs=33.9
Q ss_pred CCCccccCcccccC---CCceeecCCCCCcccHHHHHHHH-hCCCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYKP---KDSVRCIPDCHHCFHADCVDEWL-RMSATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~~---~~~~~~lp~C~H~fH~~Ci~~wl-~~~~~CP~CR~~v~ 125 (139)
....|.||-+++.. |+.-.....|+---|+.|.+-=- +.++.||-|+..-.
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 44579999987753 33333333477779999984322 34568999998654
No 291
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=38.65 E-value=66 Score=22.73 Aligned_cols=9 Identities=0% Similarity=0.069 Sum_probs=5.5
Q ss_pred Cccccchhh
Q 035703 15 TTTTGVGLG 23 (139)
Q Consensus 15 ~~~~~~~~~ 23 (139)
.++.++.+.
T Consensus 20 ~gmp~ld~~ 28 (181)
T PRK13454 20 PGMPQLDFS 28 (181)
T ss_pred CCCCCCcHH
Confidence 456666664
No 292
>PRK11827 hypothetical protein; Provisional
Probab=38.41 E-value=11 Score=21.96 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=12.1
Q ss_pred HHHhCCCCCcccCCCCC
Q 035703 109 EWLRMSATCPLCRSSPA 125 (139)
Q Consensus 109 ~wl~~~~~CP~CR~~v~ 125 (139)
.|+..--.||.|+.++.
T Consensus 3 ~~LLeILaCP~ckg~L~ 19 (60)
T PRK11827 3 HRLLEIIACPVCNGKLW 19 (60)
T ss_pred hHHHhheECCCCCCcCe
Confidence 45555557999998876
No 293
>PF15106 TMEM156: TMEM156 protein family
Probab=38.26 E-value=87 Score=23.08 Aligned_cols=8 Identities=0% Similarity=0.193 Sum_probs=2.9
Q ss_pred hHHHHHHH
Q 035703 23 GYGIAIAV 30 (139)
Q Consensus 23 ~~~i~i~l 30 (139)
.|.+.+.+
T Consensus 177 TWYvLVll 184 (226)
T PF15106_consen 177 TWYVLVLL 184 (226)
T ss_pred HHHHHHHH
Confidence 33333333
No 294
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=38.20 E-value=12 Score=30.50 Aligned_cols=60 Identities=15% Similarity=0.184 Sum_probs=38.8
Q ss_pred CCCccccCcccccCCCceeecCCCC----CcccH--HHHHHHHhC------------------------CCCCcccCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCH----HCFHA--DCVDEWLRM------------------------SATCPLCRSSP 124 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~----H~fH~--~Ci~~wl~~------------------------~~~CP~CR~~v 124 (139)
++..||||+.+|.+ +..|. |. |.+-. +-+.+|..+ ...|++|-+.+
T Consensus 14 egflCPiC~~dl~~---~~~L~-~H~d~eH~~ed~~D~lgs~~s~~~~~kkk~~r~~~~~~~k~~~s~~~s~~s~~g~~~ 89 (505)
T KOG1842|consen 14 EGFLCPICLLDLPN---LSALN-DHLDVEHFEEDEKDSLGSFKSRVLNGKKKKQRKAAQELWKMEPSEMVSHDSMCGKLL 89 (505)
T ss_pred hcccCchHhhhhhh---HHHHH-HHHhhhccccchhhHhhhHHHHHHhHHHHHhhhHHHHhhhcCccccccccccccccc
Confidence 67789999999885 22332 43 66655 556666421 12589998888
Q ss_pred CCCCcccCCCcccC
Q 035703 125 ATPLAEVVPLASHA 138 (139)
Q Consensus 125 ~~~~~~~~~~~~~~ 138 (139)
..+-+.+.+....+
T Consensus 90 n~~~~~~~~~~~~~ 103 (505)
T KOG1842|consen 90 NENGGHIYCRFHLP 103 (505)
T ss_pred cccCccccccccCC
Confidence 87766666665544
No 295
>PF15168 TRIQK: Triple QxxK/R motif-containing protein family
Probab=37.94 E-value=89 Score=19.10 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 035703 27 AIAVSILVLISTIMLASYAC 46 (139)
Q Consensus 27 ~i~l~~~~~i~~~~~~~~~~ 46 (139)
.++.+++++++.++.++|..
T Consensus 53 l~l~ail~lL~a~Ya~fyl~ 72 (79)
T PF15168_consen 53 LVLAAILVLLLAFYAFFYLN 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33444445555455544443
No 296
>COG4062 MtrB Tetrahydromethanopterin S-methyltransferase, subunit B [Coenzyme metabolism]
Probab=37.76 E-value=1.1e+02 Score=19.83 Aligned_cols=8 Identities=25% Similarity=0.916 Sum_probs=4.2
Q ss_pred CCCCCCCc
Q 035703 1 MSTANPPV 8 (139)
Q Consensus 1 ~~~~~~~~ 8 (139)
|+|+.|+.
T Consensus 54 ldPstp~l 61 (108)
T COG4062 54 LDPSTPPL 61 (108)
T ss_pred cCCCCCCc
Confidence 45555555
No 297
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=37.33 E-value=20 Score=23.48 Aligned_cols=27 Identities=26% Similarity=0.619 Sum_probs=16.4
Q ss_pred CccccCcccccCCC-ceeecCCCCCccc
Q 035703 77 GPCSICLCDYKPKD-SVRCIPDCHHCFH 103 (139)
Q Consensus 77 ~~C~ICl~~~~~~~-~~~~lp~C~H~fH 103 (139)
..||-|-.++...+ .....|.|+|-+-
T Consensus 3 p~CP~C~seytY~dg~~~iCpeC~~EW~ 30 (109)
T TIGR00686 3 PPCPKCNSEYTYHDGTQLICPSCLYEWN 30 (109)
T ss_pred CcCCcCCCcceEecCCeeECcccccccc
Confidence 35888888775332 3344566777553
No 298
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=37.02 E-value=10 Score=18.40 Aligned_cols=12 Identities=42% Similarity=0.924 Sum_probs=5.4
Q ss_pred CCcccCCCCCCC
Q 035703 116 TCPLCRSSPATP 127 (139)
Q Consensus 116 ~CP~CR~~v~~~ 127 (139)
.||.|..++...
T Consensus 1 ~CP~C~s~l~~~ 12 (28)
T PF03119_consen 1 TCPVCGSKLVRE 12 (28)
T ss_dssp B-TTT--BEEE-
T ss_pred CcCCCCCEeEcC
Confidence 478887777633
No 299
>PHA02610 uvsY.-2 hypothetical protein; Provisional
Probab=36.85 E-value=12 Score=21.01 Aligned_cols=14 Identities=21% Similarity=0.657 Sum_probs=10.7
Q ss_pred CCcccCCCCCCCCc
Q 035703 116 TCPLCRSSPATPLA 129 (139)
Q Consensus 116 ~CP~CR~~v~~~~~ 129 (139)
.|..|++++.+.++
T Consensus 3 iCvvCK~Pi~~al~ 16 (53)
T PHA02610 3 ICVVCKQPIEKALV 16 (53)
T ss_pred eeeeeCCchhhceE
Confidence 59999999875543
No 300
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=36.73 E-value=23 Score=21.61 Aligned_cols=34 Identities=26% Similarity=0.477 Sum_probs=22.1
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHH
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDE 109 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~ 109 (139)
....|.+|-.......... .++|.-.||..|...
T Consensus 35 ~~~~C~~C~~~~Ga~i~C~-~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 35 RKLKCSICKKKGGACIGCS-HPGCSRSFHVPCARK 68 (90)
T ss_pred hCCCCcCCCCCCCeEEEEe-CCCCCcEEChHHHcc
Confidence 4457999987633222222 335999999999754
No 301
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=36.70 E-value=25 Score=17.06 Aligned_cols=28 Identities=21% Similarity=0.596 Sum_probs=16.9
Q ss_pred ccccCcccccCCCceeecCCCCCcccHHH
Q 035703 78 PCSICLCDYKPKDSVRCIPDCHHCFHADC 106 (139)
Q Consensus 78 ~C~ICl~~~~~~~~~~~lp~C~H~fH~~C 106 (139)
.|.+|.++........- ..|+-.+|.+|
T Consensus 2 ~C~~C~~~~~~~~~Y~C-~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKIDGFYFYHC-SECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCcCCCEeEEe-CCCCCeEcCcc
Confidence 48888766554322222 33777788776
No 302
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=36.69 E-value=54 Score=24.19 Aligned_cols=8 Identities=0% Similarity=0.156 Sum_probs=3.4
Q ss_pred HHHHhhhh
Q 035703 43 SYACIRVK 50 (139)
Q Consensus 43 ~~~~~r~~ 50 (139)
.++..|.|
T Consensus 51 ~~~~~r~r 58 (226)
T TIGR01433 51 LFFAWKYR 58 (226)
T ss_pred heeeEEEe
Confidence 34444444
No 303
>PRK01343 zinc-binding protein; Provisional
Probab=36.45 E-value=23 Score=20.37 Aligned_cols=12 Identities=25% Similarity=0.814 Sum_probs=9.3
Q ss_pred CCCCcccCCCCC
Q 035703 114 SATCPLCRSSPA 125 (139)
Q Consensus 114 ~~~CP~CR~~v~ 125 (139)
...||+|++++.
T Consensus 9 ~~~CP~C~k~~~ 20 (57)
T PRK01343 9 TRPCPECGKPST 20 (57)
T ss_pred CCcCCCCCCcCc
Confidence 346999999865
No 304
>PF11755 DUF3311: Protein of unknown function (DUF3311); InterPro: IPR021741 This is a family of short bacterial proteins of unknwon function.
Probab=36.36 E-value=92 Score=18.26 Aligned_cols=30 Identities=27% Similarity=0.262 Sum_probs=12.5
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 035703 15 TTTTGVGLGYGIAIAVSILVLISTIMLASYAC 46 (139)
Q Consensus 15 ~~~~~~~~~~~i~i~l~~~~~i~~~~~~~~~~ 46 (139)
+.+.++.|-+. ..+..+++.++++.+.|..
T Consensus 23 P~v~G~Pff~~--w~~~wv~lts~~~~~~y~l 52 (66)
T PF11755_consen 23 PTVFGMPFFYW--WQLAWVVLTSVCMAIVYRL 52 (66)
T ss_pred ccccCcHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence 44444444433 3333333444444444444
No 305
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=36.34 E-value=24 Score=27.05 Aligned_cols=32 Identities=19% Similarity=-0.015 Sum_probs=23.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 035703 19 GVGLGYGIAIAVSILVLISTIMLASYACIRVK 50 (139)
Q Consensus 19 ~~~~~~~i~i~l~~~~~i~~~~~~~~~~~r~~ 50 (139)
...+-+.++++|+.+++|.++..+...++.+.
T Consensus 270 ~~~vPIaVG~~La~lvlivLiaYli~Rrr~~~ 301 (306)
T PF01299_consen 270 SDLVPIAVGAALAGLVLIVLIAYLIGRRRSRA 301 (306)
T ss_pred cchHHHHHHHHHHHHHHHHHHhheeEeccccc
Confidence 56778888888888888877777766666554
No 306
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=36.11 E-value=67 Score=27.75 Aligned_cols=17 Identities=29% Similarity=0.567 Sum_probs=6.9
Q ss_pred cccCCCCCCCCcccCCCc
Q 035703 118 PLCRSSPATPLAEVVPLA 135 (139)
Q Consensus 118 P~CR~~v~~~~~~~~~~~ 135 (139)
+.|+. +.++-.+.+|.+
T Consensus 484 ~~c~~-v~p~~~~s~p~y 500 (807)
T KOG1094|consen 484 PVCPL-VPPPPPNSVPHY 500 (807)
T ss_pred CCCCC-CCCCCCCCCCCc
Confidence 55533 333333335544
No 307
>PF05510 Sarcoglycan_2: Sarcoglycan alpha/epsilon; InterPro: IPR008908 Sarcoglycans are a subcomplex of transmembrane proteins which are part of the dystrophin-glycoprotein complex. They are expressed in the skeletal, cardiac and smooth muscle. Although numerous studies have been conducted on the sarcoglycan subcomplex in skeletal and cardiac muscle, the manner of the distribution and localisation of these proteins along the nonjunctional sarcolemma is not clear []. This family contains alpha and epsilon members.; GO: 0016012 sarcoglycan complex
Probab=35.94 E-value=56 Score=26.29 Aligned_cols=13 Identities=23% Similarity=0.360 Sum_probs=5.2
Q ss_pred HHHHHHhhhhhhh
Q 035703 41 LASYACIRVKANA 53 (139)
Q Consensus 41 ~~~~~~~r~~~~~ 53 (139)
+.+.+|.++....
T Consensus 303 Ls~Imc~rREG~~ 315 (386)
T PF05510_consen 303 LSYIMCCRREGVK 315 (386)
T ss_pred HHHHheechHHhh
Confidence 3333444443333
No 308
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=35.84 E-value=9.2 Score=29.64 Aligned_cols=42 Identities=21% Similarity=0.449 Sum_probs=25.5
Q ss_pred CCccccCccccc-----C---CCceeecCCCCCcccHHHHHHHHhCCCCCcccCCC
Q 035703 76 YGPCSICLCDYK-----P---KDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSS 123 (139)
Q Consensus 76 ~~~C~ICl~~~~-----~---~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~ 123 (139)
...||+|-..-. . .+..+ |.+|.-|-.+|-..+..||.|-..
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~R------yL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLR------YLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCce------EEEcCCCCCcccccCccCCCCCCC
Confidence 447999976532 1 12223 334455666776677789999764
No 309
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=35.59 E-value=75 Score=18.47 Aligned_cols=8 Identities=0% Similarity=-0.180 Sum_probs=2.9
Q ss_pred hHHHHHHH
Q 035703 23 GYGIAIAV 30 (139)
Q Consensus 23 ~~~i~i~l 30 (139)
+..+++++
T Consensus 10 a~a~~t~~ 17 (60)
T COG4736 10 ADAWGTIA 17 (60)
T ss_pred HHHHHHHH
Confidence 33333333
No 310
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=35.56 E-value=12 Score=28.51 Aligned_cols=31 Identities=26% Similarity=0.254 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 035703 20 VGLGYGIAIAVSILVLISTIMLASYACIRVK 50 (139)
Q Consensus 20 ~~~~~~i~i~l~~~~~i~~~~~~~~~~~r~~ 50 (139)
-+|.|.+.+--+++|++.+..+.+|.++|+.
T Consensus 224 p~~vf~lLVPSiILVLLaVGGLLfYr~rrRs 254 (285)
T PF05337_consen 224 PGFVFYLLVPSIILVLLAVGGLLFYRRRRRS 254 (285)
T ss_dssp -------------------------------
T ss_pred Ccccccccccchhhhhhhccceeeecccccc
Confidence 3466666666666666666666555554433
No 311
>TIGR03758 conj_TIGR03758 integrating conjugative element protein, PFL_4701 family. Members of this family of small, hydrophobic proteins are found occasionally on plasmids such as the Pseudomonas putida TOL (toluene catabolic) plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=35.51 E-value=47 Score=19.68 Aligned_cols=33 Identities=9% Similarity=0.112 Sum_probs=17.2
Q ss_pred CCCCCCccccchhhHHHHHHHHHHHHHHHHHHH
Q 035703 10 ASTAATTTTGVGLGYGIAIAVSILVLISTIMLA 42 (139)
Q Consensus 10 ~~~~~~~~~~~~~~~~i~i~l~~~~~i~~~~~~ 42 (139)
|.++.+..+++.-...-.+.+++++.++++...
T Consensus 4 Q~sAFqA~SG~~p~~l~~l~lG~~~~vllLW~a 36 (65)
T TIGR03758 4 QQSAFQAASGIDPQAMNTLILGLVLAVLFLWGA 36 (65)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556655555555555555555444443
No 312
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=35.49 E-value=16 Score=30.73 Aligned_cols=34 Identities=29% Similarity=0.642 Sum_probs=22.9
Q ss_pred CCCccccCcccccC-----------CCceeecCCCCCcccHHHHHHH
Q 035703 75 DYGPCSICLCDYKP-----------KDSVRCIPDCHHCFHADCVDEW 110 (139)
Q Consensus 75 ~~~~C~ICl~~~~~-----------~~~~~~lp~C~H~fH~~Ci~~w 110 (139)
....|+||.|.|+. .+.+. +. =|-+||..|+..-
T Consensus 512 ~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~-le-~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 512 RQASCPICQEKFEVVFDQEEDLWMYKDAVY-LE-FGRIFHSKCLSEK 556 (579)
T ss_pred cccCCcccccccceeecchhhheeecceee-ec-cCceeeccccchH
Confidence 44569999999872 11222 22 4789999998654
No 313
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.34 E-value=30 Score=29.77 Aligned_cols=44 Identities=32% Similarity=0.556 Sum_probs=31.4
Q ss_pred ccccCcccccCCCceeecCCCCC-cccHHHHHHHH--hC----CCCCcccCCCCC
Q 035703 78 PCSICLCDYKPKDSVRCIPDCHH-CFHADCVDEWL--RM----SATCPLCRSSPA 125 (139)
Q Consensus 78 ~C~ICl~~~~~~~~~~~lp~C~H-~fH~~Ci~~wl--~~----~~~CP~CR~~v~ 125 (139)
.|+||-..... ...- .||| ..+..|..... .. ...||+||..+.
T Consensus 2 ~c~ic~~s~~~---~~~~-s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~ 52 (669)
T KOG2231|consen 2 SCAICAFSPDF---VGRG-SCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVE 52 (669)
T ss_pred CcceeecCccc---cccc-cccccccchhhhhhhhhhcccccccccCccccccee
Confidence 59999776443 4434 4999 79999987764 23 346899999775
No 314
>PF07234 DUF1426: Protein of unknown function (DUF1426); InterPro: IPR009871 This family consists of several Banana bunchy top virus proteins of around 120 residues in length. Q9IGU4 from SWISSPROT is annotated a movement protein whereas most other family members are hypothetical. The function of this family is unknown.
Probab=34.93 E-value=79 Score=20.38 Aligned_cols=16 Identities=25% Similarity=0.110 Sum_probs=8.7
Q ss_pred chhhHHHHHHHHHHHH
Q 035703 20 VGLGYGIAIAVSILVL 35 (139)
Q Consensus 20 ~~~~~~i~i~l~~~~~ 35 (139)
.||.|.-+|++++.++
T Consensus 13 EwFLF~~AIFiAItIl 28 (117)
T PF07234_consen 13 EWFLFFGAIFIAITIL 28 (117)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555444
No 315
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=34.78 E-value=25 Score=28.92 Aligned_cols=51 Identities=20% Similarity=0.574 Sum_probs=32.2
Q ss_pred CCCccccCcccc-cCCCceeecCCCCCcccHHHHHHHHhC----CC----CCcccCCCCC
Q 035703 75 DYGPCSICLCDY-KPKDSVRCIPDCHHCFHADCVDEWLRM----SA----TCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~-~~~~~~~~lp~C~H~fH~~Ci~~wl~~----~~----~CP~CR~~v~ 125 (139)
.+..|.+|..-. .....+.....|+-.||..|....... .. .|=+|.....
T Consensus 167 ~n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~ 226 (464)
T KOG4323|consen 167 VNLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPK 226 (464)
T ss_pred ccceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccchh
Confidence 445699998533 233344445568899999997665421 11 5888876543
No 316
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=34.68 E-value=10 Score=19.57 Aligned_cols=11 Identities=45% Similarity=0.869 Sum_probs=7.9
Q ss_pred CCCCcccCCCC
Q 035703 114 SATCPLCRSSP 124 (139)
Q Consensus 114 ~~~CP~CR~~v 124 (139)
...||.|..++
T Consensus 26 ~~~CP~Cg~~~ 36 (41)
T smart00834 26 LATCPECGGDV 36 (41)
T ss_pred CCCCCCCCCcc
Confidence 34699998754
No 317
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=34.66 E-value=1.2e+02 Score=18.95 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=10.1
Q ss_pred ccccchhhHHHHHHHHHHHHHHHH
Q 035703 16 TTTGVGLGYGIAIAVSILVLISTI 39 (139)
Q Consensus 16 ~~~~~~~~~~i~i~l~~~~~i~~~ 39 (139)
++..+.=...+.|.++++++++++
T Consensus 18 ~~~~l~pn~lMtILivLVIIiLlI 41 (85)
T PF10717_consen 18 NLNGLNPNTLMTILIVLVIIILLI 41 (85)
T ss_pred cccccChhHHHHHHHHHHHHHHHH
Confidence 344444444444444443333333
No 318
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=34.59 E-value=51 Score=22.81 Aligned_cols=19 Identities=16% Similarity=0.002 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 035703 27 AIAVSILVLISTIMLASYA 45 (139)
Q Consensus 27 ~i~l~~~~~i~~~~~~~~~ 45 (139)
.++.+...+.++.+.++|-
T Consensus 10 ~~~ag~a~~~flgYciYFD 28 (148)
T TIGR00985 10 VIAAGIAAAAFLGYAIYFD 28 (148)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 3444444444445554443
No 319
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=34.44 E-value=40 Score=22.94 Aligned_cols=11 Identities=36% Similarity=0.779 Sum_probs=9.4
Q ss_pred CCCcccCCCCC
Q 035703 115 ATCPLCRSSPA 125 (139)
Q Consensus 115 ~~CP~CR~~v~ 125 (139)
..||.|...+.
T Consensus 124 f~Cp~Cg~~l~ 134 (147)
T smart00531 124 FTCPRCGEELE 134 (147)
T ss_pred EECCCCCCEEE
Confidence 67999999886
No 320
>KOG3352 consensus Cytochrome c oxidase, subunit Vb/COX4 [Energy production and conversion]
Probab=34.40 E-value=22 Score=24.71 Aligned_cols=6 Identities=50% Similarity=0.966 Sum_probs=3.6
Q ss_pred cccCccc
Q 035703 79 CSICLCD 85 (139)
Q Consensus 79 C~ICl~~ 85 (139)
| ||.++
T Consensus 114 C-~c~eD 119 (153)
T KOG3352|consen 114 C-GCEED 119 (153)
T ss_pred e-cccCC
Confidence 6 66555
No 321
>TIGR01006 polys_exp_MPA1 polysaccharide export protein, MPA1 family, Gram-positive type. This family contains members from Low GC Gram-positive bacteria; they are proposed to have a function in the export of complex polysaccharides.
Probab=34.21 E-value=1.1e+02 Score=22.12 Aligned_cols=32 Identities=19% Similarity=0.220 Sum_probs=16.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 035703 19 GVGLGYGIAIAVSILVLISTIMLASYACIRVK 50 (139)
Q Consensus 19 ~~~~~~~i~i~l~~~~~i~~~~~~~~~~~r~~ 50 (139)
+....+.+++++|+++.+.++++.-++..+.+
T Consensus 173 ~~~~~~~~g~~~G~~~~~~~~~~~~~~d~~i~ 204 (226)
T TIGR01006 173 NPKRNLLIGFLLGLVVALIIVLLKELLDTRVK 204 (226)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcC
Confidence 44555555666666555555544444444443
No 322
>PF11084 DUF2621: Protein of unknown function (DUF2621); InterPro: IPR020203 This entry represents a group of uncharacterised proteins.
Probab=34.15 E-value=1.3e+02 Score=20.40 Aligned_cols=14 Identities=14% Similarity=-0.088 Sum_probs=6.7
Q ss_pred cchhhHHHHHHHHH
Q 035703 19 GVGLGYGIAIAVSI 32 (139)
Q Consensus 19 ~~~~~~~i~i~l~~ 32 (139)
+.||.+++..-..+
T Consensus 3 ~~wFm~fI~~W~~v 16 (141)
T PF11084_consen 3 NGWFMWFILFWVVV 16 (141)
T ss_pred hhHHHHHHHHHHHH
Confidence 44555555443333
No 323
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=34.00 E-value=84 Score=20.37 Aligned_cols=20 Identities=30% Similarity=0.290 Sum_probs=8.2
Q ss_pred ccccchhhHHHHHHHHHHHH
Q 035703 16 TTTGVGLGYGIAIAVSILVL 35 (139)
Q Consensus 16 ~~~~~~~~~~i~i~l~~~~~ 35 (139)
...++++..+..|++.+++.
T Consensus 64 vS~~F~L~~~~ti~lv~~~~ 83 (103)
T PF12955_consen 64 VSVPFWLFAGFTIALVVLVA 83 (103)
T ss_pred ccchhhHHHHHHHHHHHHHH
Confidence 33444444444444433333
No 324
>TIGR02205 septum_zipA cell division protein ZipA. This model represents the full length of bacterial cell division protein ZipA. The N-terminal hydrophobic stretch is an uncleaved signal-anchor sequence. This is followed by an unconserved, variable length, low complexity region, and then a conserved C-terminal region of about 140 amino acids (see pfam04354) that interacts with the tubulin-like cell division protein FtsZ.
Probab=33.74 E-value=41 Score=25.87 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 035703 26 IAIAVSILVLISTIMLASYAC 46 (139)
Q Consensus 26 i~i~l~~~~~i~~~~~~~~~~ 46 (139)
+.|++|+++++.+++-.+|..
T Consensus 5 iLIIvGaiaI~aLl~hGlwt~ 25 (284)
T TIGR02205 5 ILIIVGILAIAALLFHGLWTS 25 (284)
T ss_pred hHHHHHHHHHHHHHHcccccc
Confidence 344555555544444334433
No 325
>PRK00965 tetrahydromethanopterin S-methyltransferase subunit B; Provisional
Probab=33.09 E-value=28 Score=22.28 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=9.9
Q ss_pred ccccchhhHHHHHHHHHHH
Q 035703 16 TTTGVGLGYGIAIAVSILV 34 (139)
Q Consensus 16 ~~~~~~~~~~i~i~l~~~~ 34 (139)
.+++++++|.+++++.+++
T Consensus 76 ~~tn~fyGf~igL~i~~l~ 94 (96)
T PRK00965 76 IFTNMFYGFWIGLAILFLL 94 (96)
T ss_pred hhhHHHHHHHHHHHHHHHh
Confidence 3455556665555554443
No 326
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=32.74 E-value=63 Score=15.45 Aligned_cols=9 Identities=11% Similarity=0.512 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 035703 24 YGIAIAVSI 32 (139)
Q Consensus 24 ~~i~i~l~~ 32 (139)
|.+.+++.+
T Consensus 8 f~livVLFI 16 (26)
T TIGR01732 8 FALIVVLFI 16 (26)
T ss_pred hHHHHHHHH
Confidence 333333333
No 327
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=32.40 E-value=18 Score=27.88 Aligned_cols=33 Identities=24% Similarity=0.426 Sum_probs=24.6
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHH
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVD 108 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~ 108 (139)
+...|.||+.+..+.+.+. ...|.--||.-|+.
T Consensus 313 ~C~lC~IC~~P~~E~E~~F-CD~CDRG~HT~CVG 345 (381)
T KOG1512|consen 313 SCELCRICLGPVIESEHLF-CDVCDRGPHTLCVG 345 (381)
T ss_pred ccHhhhccCCcccchheec-cccccCCCCccccc
Confidence 4567999999877765554 44488889998974
No 328
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=32.32 E-value=95 Score=17.22 Aligned_cols=13 Identities=8% Similarity=0.122 Sum_probs=5.0
Q ss_pred HHHHHHHHhhhhh
Q 035703 39 IMLASYACIRVKA 51 (139)
Q Consensus 39 ~~~~~~~~~r~~~ 51 (139)
++-..-+|+..++
T Consensus 19 ~~hmkrycrafrq 31 (54)
T PF13260_consen 19 FCHMKRYCRAFRQ 31 (54)
T ss_pred HHHHHHHHHHHhh
Confidence 3333334444433
No 329
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.32 E-value=41 Score=21.49 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=26.8
Q ss_pred CCccccCcccccCCCceeecCCCCCcccHHHHHHHH
Q 035703 76 YGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWL 111 (139)
Q Consensus 76 ~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl 111 (139)
...|.||-+.+..|+.-..++ .-.-|.+|+..=.
T Consensus 6 ewkC~VCg~~iieGqkFTF~~--kGsVH~eCl~~s~ 39 (103)
T COG4847 6 EWKCYVCGGTIIEGQKFTFTK--KGSVHYECLAESK 39 (103)
T ss_pred eeeEeeeCCEeeeccEEEEee--CCcchHHHHHHHH
Confidence 346999999999999887776 4458999987644
No 330
>PF15122 TMEM206: TMEM206 protein family
Probab=32.23 E-value=99 Score=23.44 Aligned_cols=10 Identities=20% Similarity=0.703 Sum_probs=7.7
Q ss_pred ecCCCCCcccH
Q 035703 94 CIPDCHHCFHA 104 (139)
Q Consensus 94 ~lp~C~H~fH~ 104 (139)
.+. |.|.||.
T Consensus 72 lls-Ckhhyyd 81 (298)
T PF15122_consen 72 LLS-CKHHYYD 81 (298)
T ss_pred hcc-ccccccc
Confidence 455 9999886
No 331
>PHA03189 UL14 tegument protein; Provisional
Probab=31.93 E-value=93 Score=24.35 Aligned_cols=47 Identities=15% Similarity=0.060 Sum_probs=23.5
Q ss_pred CCccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 035703 6 PPVVASTAATTTTGVGLGYGIAIAVSILVLISTIMLASYACIRVKAN 52 (139)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~i~i~l~~~~~i~~~~~~~~~~~r~~~~ 52 (139)
|+.++|..-+.--.-|+..+++-+++|-+-++..+++...+.+...+
T Consensus 274 p~~~~p~~i~~~~~~W~t~g~ag~l~~~v~~~c~l~~l~~C~rlc~~ 320 (348)
T PHA03189 274 PTEATPVPIFTGRSPWATRGMAGMLIFGVCFACYLVYLTLCGRLCYK 320 (348)
T ss_pred cccCCCCccccccchhhhcchhhhhhhhhhhhHHHHHHHHHHHHhcc
Confidence 34444444444455667777766665554443333334444444433
No 332
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=31.91 E-value=50 Score=17.18 Aligned_cols=34 Identities=21% Similarity=0.459 Sum_probs=23.3
Q ss_pred CCCccccCcccccCCC-ceeecCCCCCcccHHHHHH
Q 035703 75 DYGPCSICLCDYKPKD-SVRCIPDCHHCFHADCVDE 109 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~-~~~~lp~C~H~fH~~Ci~~ 109 (139)
....|.+|.+.+.... .+.-. .|+=..|.+|...
T Consensus 10 ~~~~C~~C~~~i~~~~~~~~C~-~C~~~~H~~C~~~ 44 (49)
T smart00109 10 KPTKCCVCRKSIWGSFQGLRCS-WCKVKCHKKCAEK 44 (49)
T ss_pred CCCCccccccccCcCCCCcCCC-CCCchHHHHHHhh
Confidence 4456999988876532 23333 4888899999875
No 333
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=31.85 E-value=76 Score=21.52 Aligned_cols=8 Identities=13% Similarity=0.414 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 035703 25 GIAIAVSI 32 (139)
Q Consensus 25 ~i~i~l~~ 32 (139)
...++++.
T Consensus 117 ~~~~~~G~ 124 (154)
T PF09835_consen 117 GLPFLLGS 124 (154)
T ss_pred HHHHHHHH
Confidence 33334443
No 334
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=31.65 E-value=31 Score=20.04 Aligned_cols=12 Identities=33% Similarity=1.043 Sum_probs=8.8
Q ss_pred CCCCcccCCCCC
Q 035703 114 SATCPLCRSSPA 125 (139)
Q Consensus 114 ~~~CP~CR~~v~ 125 (139)
+..||+|+..+.
T Consensus 2 k~~CPlCkt~~n 13 (61)
T PF05715_consen 2 KSLCPLCKTTLN 13 (61)
T ss_pred CccCCcccchhh
Confidence 456888888774
No 335
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=31.61 E-value=1.4e+02 Score=23.76 Aligned_cols=14 Identities=14% Similarity=0.133 Sum_probs=8.2
Q ss_pred CCCCCCCccCCCCC
Q 035703 1 MSTANPPVVASTAA 14 (139)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (139)
||+..-...|++..
T Consensus 1 ~~~~~~~~~~~~~~ 14 (390)
T PRK15136 1 MSANAETQTPQQPV 14 (390)
T ss_pred CCcccccCCCCCCc
Confidence 67666666555533
No 336
>KOG2487 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription; Replication, recombination and repair]
Probab=31.59 E-value=16 Score=27.92 Aligned_cols=14 Identities=29% Similarity=0.384 Sum_probs=9.5
Q ss_pred CCCccccCcccccC
Q 035703 75 DYGPCSICLCDYKP 88 (139)
Q Consensus 75 ~~~~C~ICl~~~~~ 88 (139)
-+..|+|||..|..
T Consensus 272 iG~VCSVCLSVfC~ 285 (314)
T KOG2487|consen 272 IGFVCSVCLSVFCR 285 (314)
T ss_pred eeeehHHHHHHhhC
Confidence 55678888777654
No 337
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=31.47 E-value=1.5e+02 Score=20.46 Aligned_cols=11 Identities=27% Similarity=0.159 Sum_probs=6.8
Q ss_pred CCCccccCccc
Q 035703 75 DYGPCSICLCD 85 (139)
Q Consensus 75 ~~~~C~ICl~~ 85 (139)
.+...++++-+
T Consensus 96 g~LSFslAlLD 106 (151)
T PF14584_consen 96 GDLSFSLALLD 106 (151)
T ss_pred ccceeeeEEEe
Confidence 55566776654
No 338
>PLN02971 tryptophan N-hydroxylase
Probab=31.45 E-value=68 Score=26.47 Aligned_cols=29 Identities=17% Similarity=0.127 Sum_probs=15.9
Q ss_pred CCCCccCCCCCCccccchhhHHHHHHHHH
Q 035703 4 ANPPVVASTAATTTTGVGLGYGIAIAVSI 32 (139)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~i~i~l~~ 32 (139)
|..+.+.+.-|+.++.+++...+.+++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (543)
T PLN02971 9 SDLTTKSSPGTSSFTNMYLLTTLQALVAI 37 (543)
T ss_pred cccccccCCCCccHHHHHHHHHHHHHHHH
Confidence 34444455566677766665555554443
No 339
>PF05810 NinF: NinF protein; InterPro: IPR008712 This family consists of several bacteriophage NinF proteins as well as related sequences from Escherichia coli.
Probab=31.37 E-value=42 Score=19.25 Aligned_cols=11 Identities=36% Similarity=0.984 Sum_probs=8.7
Q ss_pred ccHHHHHHHHh
Q 035703 102 FHADCVDEWLR 112 (139)
Q Consensus 102 fH~~Ci~~wl~ 112 (139)
-+.+|+.+||.
T Consensus 34 ~Ce~C~~E~l~ 44 (58)
T PF05810_consen 34 VCEECCAEWLV 44 (58)
T ss_pred HHHHHHHHHHh
Confidence 35789999985
No 340
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=31.17 E-value=76 Score=25.56 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=9.9
Q ss_pred cchhhHHHHHHHHHHHHHHHH
Q 035703 19 GVGLGYGIAIAVSILVLISTI 39 (139)
Q Consensus 19 ~~~~~~~i~i~l~~~~~i~~~ 39 (139)
.+...+.++++|.++++++++
T Consensus 10 ~~~~aiiiSv~LHvlLi~lLi 30 (387)
T PRK09510 10 KLKRAIIISVVLHIILFALLI 30 (387)
T ss_pred cchhHHHHHHHHHHHHHHHHH
Confidence 334445555555554444443
No 341
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=31.14 E-value=1.2e+02 Score=21.40 Aligned_cols=10 Identities=30% Similarity=0.554 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 035703 32 ILVLISTIML 41 (139)
Q Consensus 32 ~~~~i~~~~~ 41 (139)
+++.++.+.+
T Consensus 100 Vl~g~s~l~i 109 (163)
T PF06679_consen 100 VLVGLSALAI 109 (163)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 342
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=31.07 E-value=1.3e+02 Score=24.10 Aligned_cols=34 Identities=24% Similarity=0.234 Sum_probs=17.6
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 035703 16 TTTGVGLGYGIAIAVSILVLISTIMLASYACIRV 49 (139)
Q Consensus 16 ~~~~~~~~~~i~i~l~~~~~i~~~~~~~~~~~r~ 49 (139)
.-......+.+++++|+++.++++++.-++-.+.
T Consensus 392 ~~P~~~~~l~~~~~~Gl~lg~~~~~l~e~ld~~i 425 (444)
T TIGR03017 392 SSPRLLLNLVLSIFLGMLLGIGFAFLAELMDRRV 425 (444)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3334445555566666655555555554444443
No 343
>COG5456 Predicted integral membrane protein linked to a cation pump [Inorganic ion transport and metabolism]
Probab=31.00 E-value=1.3e+02 Score=20.96 Aligned_cols=20 Identities=10% Similarity=0.187 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 035703 26 IAIAVSILVLISTIMLASYA 45 (139)
Q Consensus 26 i~i~l~~~~~i~~~~~~~~~ 45 (139)
..++++|.++|.+-+++.+.
T Consensus 20 ~vm~~FFg~iIaVnlvma~~ 39 (166)
T COG5456 20 GVMVLFFGVIIAVNLVMAWN 39 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444445444444443
No 344
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=30.72 E-value=1.2e+02 Score=21.08 Aligned_cols=6 Identities=33% Similarity=0.700 Sum_probs=2.3
Q ss_pred ccchhh
Q 035703 18 TGVGLG 23 (139)
Q Consensus 18 ~~~~~~ 23 (139)
.+.++.
T Consensus 113 p~~gY~ 118 (154)
T PF14914_consen 113 PGYGYN 118 (154)
T ss_pred cccccc
Confidence 333443
No 345
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=30.68 E-value=88 Score=23.78 Aligned_cols=23 Identities=13% Similarity=0.284 Sum_probs=11.1
Q ss_pred cccchhhHHHHHHHHHHHHHHHH
Q 035703 17 TTGVGLGYGIAIAVSILVLISTI 39 (139)
Q Consensus 17 ~~~~~~~~~i~i~l~~~~~i~~~ 39 (139)
+.++...|+..+++++.++++++
T Consensus 285 mP~l~~~~gy~~~l~~m~~i~~~ 307 (318)
T TIGR00383 285 MPELNWKYGYPAVLIVMAVIALG 307 (318)
T ss_pred CccccchhHHHHHHHHHHHHHHH
Confidence 44444445555555554444433
No 346
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=30.66 E-value=23 Score=18.49 Aligned_cols=10 Identities=30% Similarity=0.896 Sum_probs=7.9
Q ss_pred CCcccCCCCC
Q 035703 116 TCPLCRSSPA 125 (139)
Q Consensus 116 ~CP~CR~~v~ 125 (139)
.||.|+..+.
T Consensus 1 ~CP~C~~~l~ 10 (41)
T PF13453_consen 1 KCPRCGTELE 10 (41)
T ss_pred CcCCCCcccc
Confidence 4899988765
No 347
>KOG4085 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.65 E-value=1.9e+02 Score=20.12 Aligned_cols=14 Identities=50% Similarity=0.589 Sum_probs=7.5
Q ss_pred CCCCC--CCccCCCCC
Q 035703 1 MSTAN--PPVVASTAA 14 (139)
Q Consensus 1 ~~~~~--~~~~~~~~~ 14 (139)
||.+. |.++++++.
T Consensus 1 Ms~a~~~~G~sa~~~~ 16 (175)
T KOG4085|consen 1 MSSAGGAPGASASSAP 16 (175)
T ss_pred CCcccCCCCccCCCCC
Confidence 66665 555554443
No 348
>PF11660 DUF3262: Protein of unknown function (DUF3262); InterPro: IPR021676 This entry represents small, hydrophobic proteins that are found occasionally on plasmids such as the Pseudomonas putida TOL (toluene catabolic) plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=30.64 E-value=69 Score=19.36 Aligned_cols=32 Identities=13% Similarity=0.076 Sum_probs=14.6
Q ss_pred CCCCCCccccchhhHHHHHHHHHHHHHHHHHH
Q 035703 10 ASTAATTTTGVGLGYGIAIAVSILVLISTIML 41 (139)
Q Consensus 10 ~~~~~~~~~~~~~~~~i~i~l~~~~~i~~~~~ 41 (139)
|.++.+..+++.-.-.-.+++++++.+.++..
T Consensus 5 Q~~AF~aasG~~p~~l~~li~g~~~avllLW~ 36 (76)
T PF11660_consen 5 QLAAFQAASGFTPSQLSLLILGILFAVLLLWA 36 (76)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33444555554444444444444444444443
No 349
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=30.58 E-value=38 Score=17.86 Aligned_cols=34 Identities=24% Similarity=0.482 Sum_probs=22.8
Q ss_pred CCCccccCcccccCC--CceeecCCCCCcccHHHHHH
Q 035703 75 DYGPCSICLCDYKPK--DSVRCIPDCHHCFHADCVDE 109 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~--~~~~~lp~C~H~fH~~Ci~~ 109 (139)
....|.+|.+.+... ....-. .|+=..|.+|...
T Consensus 10 ~~~~C~~C~~~i~~~~~~~~~C~-~C~~~~H~~C~~~ 45 (50)
T cd00029 10 KPTFCDVCRKSIWGLFKQGLRCS-WCKVKCHKKCADK 45 (50)
T ss_pred CCCChhhcchhhhccccceeEcC-CCCCchhhhhhcc
Confidence 445699998887642 233333 4888899999764
No 350
>PHA02673 ORF109 EEV glycoprotein; Provisional
Probab=30.33 E-value=92 Score=21.85 Aligned_cols=22 Identities=23% Similarity=0.316 Sum_probs=8.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHH
Q 035703 20 VGLGYGIAIAVSILVLISTIML 41 (139)
Q Consensus 20 ~~~~~~i~i~l~~~~~i~~~~~ 41 (139)
+.|.+.+++.+.+++++.+++.
T Consensus 34 l~~Ri~~~iSIisL~~l~v~La 55 (161)
T PHA02673 34 LFFRLMAAIAIIVLAILVVILA 55 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444333333333
No 351
>COG1288 Predicted membrane protein [Function unknown]
Probab=30.08 E-value=41 Score=27.66 Aligned_cols=27 Identities=15% Similarity=0.266 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 035703 29 AVSILVLISTIMLASYACIRVKANANR 55 (139)
Q Consensus 29 ~l~~~~~i~~~~~~~~~~~r~~~~~~~ 55 (139)
++.+++.++.+...+++.+|.|+....
T Consensus 221 v~~v~~~~~~i~y~~~Ya~KvkkdP~~ 247 (481)
T COG1288 221 VVWVVFTLISIIYVYWYASKVKKDPTL 247 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 333333344444455566666554443
No 352
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=30.01 E-value=38 Score=30.78 Aligned_cols=38 Identities=21% Similarity=0.448 Sum_probs=27.7
Q ss_pred cCCCCCCccccCcccccC-CCceeecCCCCCcccHHHHH
Q 035703 71 ARTNDYGPCSICLCDYKP-KDSVRCIPDCHHCFHADCVD 108 (139)
Q Consensus 71 ~~~~~~~~C~ICl~~~~~-~~~~~~lp~C~H~fH~~Ci~ 108 (139)
...+.|..|.||++-=.. .+.+.....|+=..|.+|..
T Consensus 214 ~~~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cyg 252 (1051)
T KOG0955|consen 214 ALLEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYG 252 (1051)
T ss_pred cccCCCccceeecccccCCCceEEEcCCCcchhhhhccC
Confidence 344578889999985443 33455566799999999987
No 353
>TIGR00859 ENaC sodium channel transporter. This model is designed from the vertebrate members of the ENaC family.
Probab=29.92 E-value=1.6e+02 Score=24.98 Aligned_cols=13 Identities=15% Similarity=0.342 Sum_probs=4.8
Q ss_pred hhhHHHHHHHHHH
Q 035703 21 GLGYGIAIAVSIL 33 (139)
Q Consensus 21 ~~~~~i~i~l~~~ 33 (139)
++|.+++-++=++
T Consensus 505 fmG~SvLSi~Eii 517 (595)
T TIGR00859 505 WMGASVLCVLELL 517 (595)
T ss_pred HHhhHHHHHHHHH
Confidence 3333333333333
No 354
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=29.80 E-value=79 Score=19.58 Aligned_cols=8 Identities=13% Similarity=0.368 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 035703 29 AVSILVLI 36 (139)
Q Consensus 29 ~l~~~~~i 36 (139)
.++|++++
T Consensus 74 ~~~~~~f~ 81 (92)
T PF03908_consen 74 FFAFLFFL 81 (92)
T ss_pred HHHHHHHH
Confidence 33343333
No 355
>PF11628 TCR_zetazeta: T-cell surface glycoprotein CD3 zeta chain; InterPro: IPR021663 The TCR complex of T-lymphocytes consists of either a TCR alpha/beta or TCR gamma/delta heterodimer co-expressed at the cell surface with the invariant subunits of CD3 labelled gamma, delta, epsilon, zeta, and eta []. The zeta subunit forms either homodimers or heterodimers with eta [], but eta homodimers have not been observed. The structure of the zetazeta transmembrane dimer consists of a left-handed coiled coil with polar contacts. Two aspartic acids are critical for zetazeta dimerisation and assembly with TCR []. The high affinity immunoglobulin epsilon receptor (IgE Fc receptor) subunit gamma associates with a variety of FcR alpha chains to form a functional signaling complex. The gamma subunit has a critical role in allowing the IgE Fc receptor to reach the cell surface and regulates several aspects of the immune response []. This family includes both CD3 zeta subunits and IgE Fc receptor gamma subunits. The gamma chain of the high affinity Fc receptor for IgE has significant structural homology to CD3 zeta and the related CD3 eta subunit and can facilitate T cell receptor expression and signaling in the absence of CD3 zeta and CD3 eta [].; PDB: 2HAC_B.
Probab=29.74 E-value=86 Score=15.92 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 035703 31 SILVLISTIMLASYACIRV 49 (139)
Q Consensus 31 ~~~~~i~~~~~~~~~~~r~ 49 (139)
+++++..+++-++|...+.
T Consensus 10 giL~iYgiiiT~L~~R~K~ 28 (33)
T PF11628_consen 10 GILFIYGIIITALYCREKF 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444444455555554444
No 356
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=29.48 E-value=1.2e+02 Score=18.54 Aligned_cols=10 Identities=40% Similarity=0.996 Sum_probs=4.0
Q ss_pred chhhHHHHHH
Q 035703 20 VGLGYGIAIA 29 (139)
Q Consensus 20 ~~~~~~i~i~ 29 (139)
+|+.|++.+-
T Consensus 50 iGIlYG~viG 59 (77)
T PRK01026 50 IGILYGLVIG 59 (77)
T ss_pred HHHHHHHHHH
Confidence 3444444333
No 357
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=29.45 E-value=34 Score=17.27 Aligned_cols=8 Identities=38% Similarity=1.414 Sum_probs=5.5
Q ss_pred CCcccCCC
Q 035703 116 TCPLCRSS 123 (139)
Q Consensus 116 ~CP~CR~~ 123 (139)
.||+|.++
T Consensus 20 ~CP~Cg~~ 27 (34)
T cd00729 20 KCPICGAP 27 (34)
T ss_pred cCcCCCCc
Confidence 68888654
No 358
>KOG4482 consensus Sarcoglycan complex, alpha/epsilon subunits [Function unknown]
Probab=29.41 E-value=85 Score=25.32 Aligned_cols=17 Identities=12% Similarity=0.112 Sum_probs=7.3
Q ss_pred CccccchhhHHHHHHHH
Q 035703 15 TTTTGVGLGYGIAIAVS 31 (139)
Q Consensus 15 ~~~~~~~~~~~i~i~l~ 31 (139)
++.++.-+.+.|...++
T Consensus 292 dyy~df~~tfaIpl~Va 308 (449)
T KOG4482|consen 292 DYYGDFLHTFAIPLGVA 308 (449)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 44444444444433333
No 359
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=29.39 E-value=94 Score=22.31 Aligned_cols=10 Identities=10% Similarity=0.348 Sum_probs=6.2
Q ss_pred ccHHHHHHHH
Q 035703 102 FHADCVDEWL 111 (139)
Q Consensus 102 fH~~Ci~~wl 111 (139)
...+-+..||
T Consensus 124 ~~G~~~R~~L 133 (186)
T PF07406_consen 124 LPGENFRSYL 133 (186)
T ss_pred cccccHHHHH
Confidence 3456667777
No 360
>PRK10220 hypothetical protein; Provisional
Probab=29.36 E-value=41 Score=22.04 Aligned_cols=26 Identities=27% Similarity=0.701 Sum_probs=15.1
Q ss_pred CccccCcccccCCC-ceeecCCCCCcc
Q 035703 77 GPCSICLCDYKPKD-SVRCIPDCHHCF 102 (139)
Q Consensus 77 ~~C~ICl~~~~~~~-~~~~lp~C~H~f 102 (139)
..||-|-.++...+ ...+.|.|+|-+
T Consensus 4 P~CP~C~seytY~d~~~~vCpeC~hEW 30 (111)
T PRK10220 4 PHCPKCNSEYTYEDNGMYICPECAHEW 30 (111)
T ss_pred CcCCCCCCcceEcCCCeEECCcccCcC
Confidence 35888887765433 233455566644
No 361
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=29.20 E-value=1.3e+02 Score=24.52 Aligned_cols=21 Identities=19% Similarity=0.233 Sum_probs=10.5
Q ss_pred CccccchhhHHHHHHHHHHHH
Q 035703 15 TTTTGVGLGYGIAIAVSILVL 35 (139)
Q Consensus 15 ~~~~~~~~~~~i~i~l~~~~~ 35 (139)
++=+--+.+|++++++++++.
T Consensus 61 pNHGlhaagFfvaflvslVL~ 81 (429)
T PF12297_consen 61 PNHGLHAAGFFVAFLVSLVLT 81 (429)
T ss_pred cCcchHHHHHHHHHHHHHHHH
Confidence 444444555555555555444
No 362
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=28.95 E-value=1.8e+02 Score=23.55 Aligned_cols=7 Identities=43% Similarity=1.127 Sum_probs=3.9
Q ss_pred ccccCcc
Q 035703 78 PCSICLC 84 (139)
Q Consensus 78 ~C~ICl~ 84 (139)
.|+-|-.
T Consensus 223 ~C~~Cd~ 229 (419)
T PRK15103 223 SCSCCTA 229 (419)
T ss_pred cCCCCCC
Confidence 3666644
No 363
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=28.64 E-value=18 Score=19.80 Aligned_cols=20 Identities=5% Similarity=0.105 Sum_probs=11.1
Q ss_pred CCCCccccchhhHHHHHHHH
Q 035703 12 TAATTTTGVGLGYGIAIAVS 31 (139)
Q Consensus 12 ~~~~~~~~~~~~~~i~i~l~ 31 (139)
-+-+++.++.+.|.+.++..
T Consensus 23 qar~~lq~lfvnf~lilicl 42 (52)
T TIGR01294 23 QARQNLQNLFINFCLILICL 42 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33456666666666554433
No 364
>KOG3816 consensus Cell differentiation regulator of the Headcase family [Signal transduction mechanisms]
Probab=28.58 E-value=26 Score=28.25 Aligned_cols=27 Identities=30% Similarity=0.711 Sum_probs=20.9
Q ss_pred ccCcccccCCCceeecCCCCCcccHHHHHHH
Q 035703 80 SICLCDYKPKDSVRCIPDCHHCFHADCVDEW 110 (139)
Q Consensus 80 ~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~w 110 (139)
.||.-.+-++|.. | |+...|.+|+..|
T Consensus 92 ~~C~~VvCNNE~C---~-~~~~MH~qCF~~W 118 (526)
T KOG3816|consen 92 LICSFVVCNNEHC---P-CSTWMHLQCFYEW 118 (526)
T ss_pred hhceEEeecCCCC---C-hhhHHHHHHHHHH
Confidence 4666666666654 3 9999999999999
No 365
>PRK11901 hypothetical protein; Reviewed
Probab=28.12 E-value=64 Score=25.31 Aligned_cols=18 Identities=33% Similarity=0.547 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 035703 26 IAIAVSILVLISTIMLAS 43 (139)
Q Consensus 26 i~i~l~~~~~i~~~~~~~ 43 (139)
|.|-++|||++++|+.+-
T Consensus 38 ~MiGiGilVLlLLIi~Ig 55 (327)
T PRK11901 38 MMIGIGILVLLLLIIAIG 55 (327)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 445555555554444443
No 366
>PF04418 DUF543: Domain of unknown function (DUF543); InterPro: IPR007512 This family of short eukaryotic proteins has no known function. Most of the members of this family are only 80 amino acid residues long. However the Arabidopsis homologue is over 300 residues long. These proteins contain a conserved N-terminal cysteine and a conserved motif GXGXGXG in the carboxy terminal half that may be functionally important.
Probab=27.95 E-value=62 Score=19.66 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=11.1
Q ss_pred CCCCCCCccCCCCCCccccchhhHHHH
Q 035703 1 MSTANPPVVASTAATTTTGVGLGYGIA 27 (139)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~i~ 27 (139)
||...+++++. .+.-..+.-+|.-.
T Consensus 1 Ms~~~~~~~~~--~~se~~~~~kwD~c 25 (75)
T PF04418_consen 1 MSEQPENVAPT--PPSEDELGEKWDRC 25 (75)
T ss_pred CCCCCcCCCCC--CCcHHHHHHHHHHH
Confidence 66655544332 22223444444443
No 367
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=27.86 E-value=95 Score=15.83 Aligned_cols=18 Identities=17% Similarity=0.257 Sum_probs=8.3
Q ss_pred chhhHHHHHHHHHHHHHH
Q 035703 20 VGLGYGIAIAVSILVLIS 37 (139)
Q Consensus 20 ~~~~~~i~i~l~~~~~i~ 37 (139)
-|++..+++++.+.++..
T Consensus 9 ~W~Gl~~g~~l~~~~~tG 26 (37)
T PF13706_consen 9 RWLGLILGLLLFVIFLTG 26 (37)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344555555444444433
No 368
>PF03988 DUF347: Repeat of Unknown Function (DUF347) ; InterPro: IPR007136 This repeat is found as four tandem repeats in a family of bacterial membrane proteins. Each repeat contains two transmembrane regions and a conserved tryptophan.
Probab=27.83 E-value=1.2e+02 Score=16.99 Aligned_cols=9 Identities=56% Similarity=0.995 Sum_probs=3.9
Q ss_pred chhhHHHHH
Q 035703 20 VGLGYGIAI 28 (139)
Q Consensus 20 ~~~~~~i~i 28 (139)
+++++..+.
T Consensus 25 lglg~~~~~ 33 (55)
T PF03988_consen 25 LGLGYLIST 33 (55)
T ss_pred cCccHHHHH
Confidence 444444433
No 369
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=27.80 E-value=57 Score=26.75 Aligned_cols=45 Identities=13% Similarity=0.270 Sum_probs=35.6
Q ss_pred ccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 78 PCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 78 ~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
.|+|=-|. +++..+.|.-||+|-+.=|++++.....+|+=.+++.
T Consensus 2 ~CaISgEv---P~~PVvS~~Sg~vfEkrLIEqyI~e~G~DPIt~~pLs 46 (506)
T KOG0289|consen 2 VCAISGEV---PEEPVVSPVSGHVFEKRLIEQYIAETGKDPITNEPLS 46 (506)
T ss_pred eecccCCC---CCCccccccccchHHHHHHHHHHHHcCCCCCCCCcCC
Confidence 36665554 3445566779999999999999998889999988876
No 370
>PRK13881 conjugal transfer protein TrbI; Provisional
Probab=27.60 E-value=1.2e+02 Score=25.10 Aligned_cols=21 Identities=5% Similarity=0.085 Sum_probs=9.9
Q ss_pred ccccchhhHHHHHHHHHHHHH
Q 035703 16 TTTGVGLGYGIAIAVSILVLI 36 (139)
Q Consensus 16 ~~~~~~~~~~i~i~l~~~~~i 36 (139)
...++.+.+..+++..|++++
T Consensus 25 rvnn~p~~i~~~~~~~f~~~~ 45 (472)
T PRK13881 25 RVNNMPMYILGGVLLSFVLVM 45 (472)
T ss_pred eecCCchhhHHHHHHHHHHHH
Confidence 344555555444444444433
No 371
>PHA03093 EEV glycoprotein; Provisional
Probab=27.20 E-value=1.4e+02 Score=21.48 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=13.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 035703 19 GVGLGYGIAIAVSILVLISTIMLASYAC 46 (139)
Q Consensus 19 ~~~~~~~i~i~l~~~~~i~~~~~~~~~~ 46 (139)
.+.|.+.+++.+..++.+.+++.+.+-.
T Consensus 36 ~i~~RisiiiSIlsL~~i~~~LAlqln~ 63 (185)
T PHA03093 36 GICIRISIIISILSLIAITATLALQLNK 63 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554444444433
No 372
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=27.01 E-value=1.6e+02 Score=18.14 Aligned_cols=26 Identities=35% Similarity=0.474 Sum_probs=16.2
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHH
Q 035703 16 TTTGVGLGYGIAIAVSILVLISTIML 41 (139)
Q Consensus 16 ~~~~~~~~~~i~i~l~~~~~i~~~~~ 41 (139)
.+.+..++|.++--.++++++.++..
T Consensus 40 ~~~GfPlgfw~aaQGsi~~fviLi~~ 65 (81)
T PF13937_consen 40 TFGGFPLGFWFAAQGSIIVFVILIFV 65 (81)
T ss_pred eeCCCChHHHHHHHhHHHHHHHHHHH
Confidence 36677777777766666555544443
No 373
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=26.96 E-value=54 Score=18.02 Aligned_cols=14 Identities=29% Similarity=0.313 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 035703 27 AIAVSILVLISTIM 40 (139)
Q Consensus 27 ~i~l~~~~~i~~~~ 40 (139)
.+++++++++.++.
T Consensus 7 ~iilg~~ll~~Lig 20 (49)
T PF05624_consen 7 LIILGALLLLLLIG 20 (49)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444443333
No 374
>PF15339 Afaf: Acrosome formation-associated factor
Probab=26.59 E-value=1.6e+02 Score=21.07 Aligned_cols=16 Identities=19% Similarity=0.239 Sum_probs=7.6
Q ss_pred ccchhhHHHHHHHHHH
Q 035703 18 TGVGLGYGIAIAVSIL 33 (139)
Q Consensus 18 ~~~~~~~~i~i~l~~~ 33 (139)
-++-++..++|.+--+
T Consensus 126 e~~KlkLmLGIsLmTl 141 (200)
T PF15339_consen 126 EELKLKLMLGISLMTL 141 (200)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555554433
No 375
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=26.47 E-value=11 Score=20.67 Aligned_cols=19 Identities=5% Similarity=0.072 Sum_probs=10.4
Q ss_pred CCCccccchhhHHHHHHHH
Q 035703 13 AATTTTGVGLGYGIAIAVS 31 (139)
Q Consensus 13 ~~~~~~~~~~~~~i~i~l~ 31 (139)
+-+++.++.+.|.+.++..
T Consensus 24 a~qnlqelfvnfclilicl 42 (52)
T PF04272_consen 24 ARQNLQELFVNFCLILICL 42 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3356666666665544433
No 376
>PF12088 DUF3565: Protein of unknown function (DUF3565); InterPro: IPR021948 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 30 to 78 amino acids in length. This protein has two conserved sequence motifs: WVA and CGH.
Probab=26.34 E-value=46 Score=19.35 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=12.2
Q ss_pred CCCceeecCCCCCcccH
Q 035703 88 PKDSVRCIPDCHHCFHA 104 (139)
Q Consensus 88 ~~~~~~~lp~C~H~fH~ 104 (139)
+++.+..|. |||.=|-
T Consensus 8 e~hWVA~L~-CGH~QHv 23 (61)
T PF12088_consen 8 EGHWVAELS-CGHTQHV 23 (61)
T ss_pred cCCEEEEec-ccccccc
Confidence 466788888 9987664
No 377
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=26.28 E-value=1.3e+02 Score=20.87 Aligned_cols=37 Identities=27% Similarity=0.177 Sum_probs=22.7
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 035703 17 TTGVGLGYGIAIAVSILVLISTIMLASYACIRVKANA 53 (139)
Q Consensus 17 ~~~~~~~~~i~i~l~~~~~i~~~~~~~~~~~r~~~~~ 53 (139)
++---+.+.++|++.+++++.++.++.-..++.-..-
T Consensus 27 fsthm~tILiaIvVliiiiivli~lcssRKkKaaAAi 63 (189)
T PF05568_consen 27 FSTHMYTILIAIVVLIIIIIVLIYLCSSRKKKAAAAI 63 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhh
Confidence 3344456667777777777777777666665555433
No 378
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=26.25 E-value=30 Score=30.08 Aligned_cols=32 Identities=28% Similarity=0.726 Sum_probs=25.5
Q ss_pred ecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 94 CIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 94 ~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
..|.|.-+||.+=++.-..++.-||.||..-.
T Consensus 1046 ~Cp~C~~~F~~eDFEl~vLqKGHCPFCrTS~d 1077 (1081)
T KOG1538|consen 1046 MCPSCFQMFHSEDFELLVLQKGHCPFCRTSKD 1077 (1081)
T ss_pred hCchHHhhhccchhhHHHHhcCCCCccccccc
Confidence 45578888998888877777888999998644
No 379
>COG0675 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=26.23 E-value=48 Score=24.95 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=20.3
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHH
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDE 109 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~ 109 (139)
.-..|+.|-. +. ......|.|||.+|.+=--.
T Consensus 308 tS~~C~~cg~-~~--~r~~~C~~cg~~~~rD~naa 339 (364)
T COG0675 308 TSKTCPCCGH-LS--GRLFKCPRCGFVHDRDVNAA 339 (364)
T ss_pred CcccccccCC-cc--ceeEECCCCCCeehhhHHHH
Confidence 3346999988 22 23334566999999865433
No 380
>PF07774 DUF1620: Protein of unknown function (DUF1620); InterPro: IPR011678 These sequences are mainly derived from predicted eukaryotic proteins. The region in question lies towards the C terminus of these large proteins and is approximately 300 amino acid residues long.
Probab=26.16 E-value=1.9e+02 Score=21.20 Aligned_cols=19 Identities=5% Similarity=-0.230 Sum_probs=11.3
Q ss_pred ccCCCCCCccccchhhHHH
Q 035703 8 VVASTAATTTTGVGLGYGI 26 (139)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~i 26 (139)
.+||...|.++...=.+.+
T Consensus 172 i~PS~~FD~L~~dFnk~~L 190 (217)
T PF07774_consen 172 IAPSKSFDLLSEDFNKALL 190 (217)
T ss_pred ecCCccccccccCcCHHHH
Confidence 4677777877654444333
No 381
>PF05510 Sarcoglycan_2: Sarcoglycan alpha/epsilon; InterPro: IPR008908 Sarcoglycans are a subcomplex of transmembrane proteins which are part of the dystrophin-glycoprotein complex. They are expressed in the skeletal, cardiac and smooth muscle. Although numerous studies have been conducted on the sarcoglycan subcomplex in skeletal and cardiac muscle, the manner of the distribution and localisation of these proteins along the nonjunctional sarcolemma is not clear []. This family contains alpha and epsilon members.; GO: 0016012 sarcoglycan complex
Probab=25.83 E-value=2.5e+02 Score=22.69 Aligned_cols=41 Identities=12% Similarity=0.152 Sum_probs=23.3
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 035703 15 TTTTGVGLGYGIAIAVSILVLISTIMLASYACIRVKANANR 55 (139)
Q Consensus 15 ~~~~~~~~~~~i~i~l~~~~~i~~~~~~~~~~~r~~~~~~~ 55 (139)
+++.+..+.+.+..++++++++++.++++...-....+..+
T Consensus 280 ~y~~d~~vtl~iPl~i~llL~llLs~Imc~rREG~~~rd~~ 320 (386)
T PF05510_consen 280 DYFPDFLVTLAIPLIIALLLLLLLSYIMCCRREGVKKRDSK 320 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHheechHHhhcchhc
Confidence 55666556666665565556666666666655444444433
No 382
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=25.69 E-value=1.2e+02 Score=17.17 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 035703 27 AIAVSILVLISTIMLASYAC 46 (139)
Q Consensus 27 ~i~l~~~~~i~~~~~~~~~~ 46 (139)
.|++.+.++++=++++.|..
T Consensus 8 IIviVlgvIigNia~LK~sA 27 (55)
T PF11446_consen 8 IIVIVLGVIIGNIAALKYSA 27 (55)
T ss_pred HHHHHHHHHHhHHHHHHHhc
Confidence 33444444455455544433
No 383
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=25.63 E-value=31 Score=17.73 Aligned_cols=28 Identities=18% Similarity=0.574 Sum_probs=16.0
Q ss_pred CCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 96 PDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 96 p~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
+.||++||..=--. .....|..|..++.
T Consensus 5 ~~Cg~~Yh~~~~pP--~~~~~Cd~cg~~L~ 32 (36)
T PF05191_consen 5 PKCGRIYHIEFNPP--KVEGVCDNCGGELV 32 (36)
T ss_dssp TTTTEEEETTTB----SSTTBCTTTTEBEB
T ss_pred CCCCCccccccCCC--CCCCccCCCCCeeE
Confidence 45999999532111 23346888866543
No 384
>PRK01658 holin-like protein; Validated
Probab=25.42 E-value=1.4e+02 Score=19.87 Aligned_cols=20 Identities=15% Similarity=0.393 Sum_probs=9.4
Q ss_pred ccchhhHHHHHHHHHHHHHH
Q 035703 18 TGVGLGYGIAIAVSILVLIS 37 (139)
Q Consensus 18 ~~~~~~~~i~i~l~~~~~i~ 37 (139)
.+.|+.+.+.++++.+.++.
T Consensus 85 ~~~~~~il~~ivvsT~l~l~ 104 (122)
T PRK01658 85 SSKGISLFLVVVISTFVVMI 104 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555444433
No 385
>PRK09546 zntB zinc transporter; Reviewed
Probab=25.38 E-value=1.1e+02 Score=23.47 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=8.3
Q ss_pred cccchhhHHHHHHHHHHHHHH
Q 035703 17 TTGVGLGYGIAIAVSILVLIS 37 (139)
Q Consensus 17 ~~~~~~~~~i~i~l~~~~~i~ 37 (139)
+.+..-.|+..+++++.++++
T Consensus 291 mPel~~~~gy~~~l~im~~i~ 311 (324)
T PRK09546 291 IPGGGWPFGFSIFCLLLVVLI 311 (324)
T ss_pred CCCcCCcchHHHHHHHHHHHH
Confidence 334332344444444433333
No 386
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=25.34 E-value=76 Score=26.69 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 035703 28 IAVSILVLISTIMLASYACIRV 49 (139)
Q Consensus 28 i~l~~~~~i~~~~~~~~~~~r~ 49 (139)
+++++++++++++.+-|+.++.
T Consensus 4 liv~llVilv~~~~~g~~lRkk 25 (570)
T COG4477 4 LIVALLVILVAAYAVGYLLRKK 25 (570)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444333
No 387
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=25.25 E-value=29 Score=27.47 Aligned_cols=19 Identities=42% Similarity=1.018 Sum_probs=12.8
Q ss_pred eeecCCCC---CcccHHHHHHHHhCCCCCcccCC
Q 035703 92 VRCIPDCH---HCFHADCVDEWLRMSATCPLCRS 122 (139)
Q Consensus 92 ~~~lp~C~---H~fH~~Ci~~wl~~~~~CP~CR~ 122 (139)
.+... || |.|++ .||.||+
T Consensus 355 YRC~~-CGF~a~~l~W-----------~CPsC~~ 376 (389)
T COG2956 355 YRCQN-CGFTAHTLYW-----------HCPSCRA 376 (389)
T ss_pred ceecc-cCCcceeeee-----------eCCCccc
Confidence 34443 88 76665 4799987
No 388
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=25.12 E-value=71 Score=25.13 Aligned_cols=45 Identities=7% Similarity=-0.123 Sum_probs=30.7
Q ss_pred CCCccccCcccccCCCceeecCCCCCc-ccHHHHHHHHhCCCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHC-FHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
...+|..|-+.... ....+ |||. |+.+|-. +.-..+||+|...+-
T Consensus 342 s~~~~~~~~~~~~s---t~~~~-~~~n~~~~~~a~--~s~~~~~~~c~~~~~ 387 (394)
T KOG2113|consen 342 SSLKGTSAGFGLLS---TIWSG-GNMNLSPGSLAS--ASASPTSSTCDHNDH 387 (394)
T ss_pred hhcccccccCceee---eEeec-CCcccChhhhhh--cccCCccccccccce
Confidence 44567777665443 34455 9987 8888877 456678999976543
No 389
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=25.12 E-value=34 Score=19.93 Aligned_cols=10 Identities=30% Similarity=1.142 Sum_probs=8.4
Q ss_pred CCcccCCCCC
Q 035703 116 TCPLCRSSPA 125 (139)
Q Consensus 116 ~CP~CR~~v~ 125 (139)
.||.||.++.
T Consensus 10 aCP~~kg~L~ 19 (60)
T COG2835 10 ACPVCKGPLV 19 (60)
T ss_pred eccCcCCcce
Confidence 5999999875
No 390
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=25.00 E-value=1.6e+02 Score=19.85 Aligned_cols=31 Identities=19% Similarity=0.165 Sum_probs=15.8
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035703 18 TGVGLGYGIAIAVSILVLISTIMLASYACIR 48 (139)
Q Consensus 18 ~~~~~~~~i~i~l~~~~~i~~~~~~~~~~~r 48 (139)
.+....+.++..+..+++..+.+...+...+
T Consensus 114 ~~~~~~~~~G~~i~~~v~~~i~Y~l~~~~~~ 144 (154)
T PF09835_consen 114 WEFGLPFLLGSLILGIVLGIISYFLVYFLVR 144 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666665555555554444444444433
No 391
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=24.91 E-value=94 Score=24.28 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 035703 34 VLISTIMLASYACIRVKA 51 (139)
Q Consensus 34 ~~i~~~~~~~~~~~r~~~ 51 (139)
+++.++.+..++..|.|.
T Consensus 54 v~i~V~~l~~~f~~ryR~ 71 (315)
T PRK10525 54 VVIPAILMAVGFAWKYRA 71 (315)
T ss_pred hHHHHHHHHheeEEEEec
Confidence 333333344444444443
No 392
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=24.82 E-value=1.2e+02 Score=20.70 Aligned_cols=18 Identities=17% Similarity=0.113 Sum_probs=8.4
Q ss_pred cchhhHHHHHHHHHHHHH
Q 035703 19 GVGLGYGIAIAVSILVLI 36 (139)
Q Consensus 19 ~~~~~~~i~i~l~~~~~i 36 (139)
+.|+.+.++++++.++.+
T Consensus 89 ~~~~~Il~~ivvSTllvl 106 (141)
T PRK04125 89 QYPVQIIGVIIVATILLL 106 (141)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444455554444443
No 393
>PF09777 OSTMP1: Osteopetrosis-associated transmembrane protein 1 precursor; InterPro: IPR019172 Osteopetrosis-associated transmembrane protein 1 (OSTM1) is required for osteoclast and melanocyte maturation and function. Mutations in OSTM1 give rise to autosomal recessive osteopetrosis, also called autosomal recessive Albers-Schonberg disease [, ].
Probab=24.71 E-value=67 Score=23.91 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q 035703 27 AIAVSILVLISTIMLASYACIRVKA 51 (139)
Q Consensus 27 ~i~l~~~~~i~~~~~~~~~~~r~~~ 51 (139)
++.+.++++.+++++..|+..+++.
T Consensus 194 ~v~~~vl~lpv~FY~~s~~~~~~~~ 218 (237)
T PF09777_consen 194 AVSVFVLFLPVLFYLSSYLHSERKK 218 (237)
T ss_pred HHHHHHHHHHHHHHHhheeeecccc
Confidence 3333333344444454454444433
No 394
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=24.65 E-value=14 Score=28.10 Aligned_cols=29 Identities=28% Similarity=0.608 Sum_probs=19.6
Q ss_pred CCC-CcccHHHHHHHHh--CCCCCcccCCCCC
Q 035703 97 DCH-HCFHADCVDEWLR--MSATCPLCRSSPA 125 (139)
Q Consensus 97 ~C~-H~fH~~Ci~~wl~--~~~~CP~CR~~v~ 125 (139)
+|. -+||..|+.-=.. .+=.||.|+....
T Consensus 239 ~C~~eWFH~~CVGL~~~PkgkWyC~~C~~~~~ 270 (274)
T KOG1973|consen 239 GCPIEWFHFTCVGLKTKPKGKWYCPRCKAENK 270 (274)
T ss_pred CCCcceEEEeccccccCCCCcccchhhhhhhh
Confidence 488 8999999854321 1226999987643
No 395
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.63 E-value=1.1e+02 Score=23.16 Aligned_cols=8 Identities=13% Similarity=0.172 Sum_probs=3.1
Q ss_pred HHHHhhhh
Q 035703 43 SYACIRVK 50 (139)
Q Consensus 43 ~~~~~r~~ 50 (139)
+|++.+.+
T Consensus 20 l~l~~r~r 27 (299)
T KOG3054|consen 20 LFLWKRRR 27 (299)
T ss_pred HHHHHhhc
Confidence 34444333
No 396
>PRK00420 hypothetical protein; Validated
Probab=24.61 E-value=65 Score=21.20 Aligned_cols=12 Identities=17% Similarity=0.348 Sum_probs=7.7
Q ss_pred CCccccCccccc
Q 035703 76 YGPCSICLCDYK 87 (139)
Q Consensus 76 ~~~C~ICl~~~~ 87 (139)
...||.|-.++-
T Consensus 23 ~~~CP~Cg~pLf 34 (112)
T PRK00420 23 SKHCPVCGLPLF 34 (112)
T ss_pred cCCCCCCCCcce
Confidence 356888866544
No 397
>PRK12657 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=24.59 E-value=2e+02 Score=18.44 Aligned_cols=24 Identities=8% Similarity=0.281 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 035703 23 GYGIAIAVSILVLISTIMLASYAC 46 (139)
Q Consensus 23 ~~~i~i~l~~~~~i~~~~~~~~~~ 46 (139)
-+.++++++.+.+++.+.+..|..
T Consensus 64 ~ldvaLvlAll~Fv~tva~ARyl~ 87 (100)
T PRK12657 64 FLDSIMLIAIISFVSSVSISRFIG 87 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666655543
No 398
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=24.57 E-value=1e+02 Score=23.79 Aligned_cols=26 Identities=19% Similarity=0.478 Sum_probs=11.9
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHH
Q 035703 16 TTTGVGLGYGIAIAVSILVLISTIML 41 (139)
Q Consensus 16 ~~~~~~~~~~i~i~l~~~~~i~~~~~ 41 (139)
.+.++...|+-.+++++.++++++++
T Consensus 288 ~mPel~~~~Gy~~~l~~m~~~~~~~~ 313 (322)
T COG0598 288 GMPELDWPYGYPIALILMLLLALLLY 313 (322)
T ss_pred CCcCCCCcccHHHHHHHHHHHHHHHH
Confidence 34444455554555544444443333
No 399
>PF10886 DUF2685: Protein of unknown function (DUF2685); InterPro: IPR024362 This is a family of uncharacterised bacteriophage proteins. Their function in unknown.
Probab=24.56 E-value=32 Score=19.58 Aligned_cols=12 Identities=17% Similarity=0.642 Sum_probs=9.7
Q ss_pred CCcccCCCCCCC
Q 035703 116 TCPLCRSSPATP 127 (139)
Q Consensus 116 ~CP~CR~~v~~~ 127 (139)
.|.+||+++.+.
T Consensus 3 ~CvVCKqpi~~a 14 (54)
T PF10886_consen 3 ICVVCKQPIDDA 14 (54)
T ss_pred eeeeeCCccCcc
Confidence 488999998865
No 400
>KOG1140 consensus N-end rule pathway, recognition component UBR1 [Posttranslational modification, protein turnover, chaperones]
Probab=24.43 E-value=39 Score=32.33 Aligned_cols=16 Identities=25% Similarity=0.848 Sum_probs=14.2
Q ss_pred CCCCcccHHHHHHHHh
Q 035703 97 DCHHCFHADCVDEWLR 112 (139)
Q Consensus 97 ~C~H~fH~~Ci~~wl~ 112 (139)
.|||..|.+|+....+
T Consensus 1150 ~c~h~mh~~c~~~~~~ 1165 (1738)
T KOG1140|consen 1150 SCGHHMHYGCFKRYVQ 1165 (1738)
T ss_pred ccCCcchHHHHHHHHH
Confidence 4999999999998874
No 401
>PF13209 DUF4017: Protein of unknown function (DUF4017)
Probab=24.39 E-value=55 Score=18.65 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=17.7
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 035703 15 TTTTGVGLGYGIAIAVSILVLISTIMLASYAC 46 (139)
Q Consensus 15 ~~~~~~~~~~~i~i~l~~~~~i~~~~~~~~~~ 46 (139)
++-...+.++.++-+-++-+++....+.+|..
T Consensus 25 egYN~vgWKlfvGQ~YAiPif~i~aiitFyin 56 (60)
T PF13209_consen 25 EGYNTVGWKLFVGQAYAIPIFIITAIITFYIN 56 (60)
T ss_pred cCccccchhheecchhHhHHHHHHHHHhheec
Confidence 34445566666666666665555555544443
No 402
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=24.39 E-value=23 Score=20.41 Aligned_cols=11 Identities=27% Similarity=0.839 Sum_probs=5.8
Q ss_pred CCcccCCCCCC
Q 035703 116 TCPLCRSSPAT 126 (139)
Q Consensus 116 ~CP~CR~~v~~ 126 (139)
.||.|++++..
T Consensus 4 ~CP~C~k~~~~ 14 (57)
T PF03884_consen 4 KCPICGKPVEW 14 (57)
T ss_dssp E-TTT--EEE-
T ss_pred cCCCCCCeecc
Confidence 59999998764
No 403
>PRK02919 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=24.38 E-value=1.8e+02 Score=17.91 Aligned_cols=12 Identities=17% Similarity=0.376 Sum_probs=5.2
Q ss_pred hHHHHHHHHHHH
Q 035703 23 GYGIAIAVSILV 34 (139)
Q Consensus 23 ~~~i~i~l~~~~ 34 (139)
.+||++++.|+.
T Consensus 15 vlGMg~VfvFL~ 26 (82)
T PRK02919 15 FLGMGFVLAFLF 26 (82)
T ss_pred HHHHHHHHHHHH
Confidence 344455444333
No 404
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.37 E-value=37 Score=23.22 Aligned_cols=19 Identities=26% Similarity=0.534 Sum_probs=12.6
Q ss_pred cCCCCCCccccCcc-cccCC
Q 035703 71 ARTNDYGPCSICLC-DYKPK 89 (139)
Q Consensus 71 ~~~~~~~~C~ICl~-~~~~~ 89 (139)
....++..|-||+- .|.+|
T Consensus 60 aGv~ddatC~IC~KTKFADG 79 (169)
T KOG3799|consen 60 AGVGDDATCGICHKTKFADG 79 (169)
T ss_pred cccCcCcchhhhhhcccccc
Confidence 33458889999975 44443
No 405
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=24.10 E-value=1.2e+02 Score=23.24 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 035703 25 GIAIAVSILVLISTIMLASYAC 46 (139)
Q Consensus 25 ~i~i~l~~~~~i~~~~~~~~~~ 46 (139)
..++++..++.++++++..+..
T Consensus 220 ~~G~~~L~ll~~lv~~~vr~kr 241 (278)
T PF06697_consen 220 VGGVVLLGLLSLLVAMLVRYKR 241 (278)
T ss_pred hHHHHHHHHHHHHHHhhhhhhH
Confidence 3444443333333334433333
No 406
>TIGR01710 typeII_sec_gspG general secretion pathway protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=24.03 E-value=1.4e+02 Score=19.91 Aligned_cols=10 Identities=30% Similarity=0.494 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 035703 27 AIAVSILVLI 36 (139)
Q Consensus 27 ~i~l~~~~~i 36 (139)
.++++++.++
T Consensus 9 livlaIigil 18 (134)
T TIGR01710 9 MVVLVILGLL 18 (134)
T ss_pred HHHHHHHHHH
Confidence 3344443333
No 407
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=24.01 E-value=56 Score=27.47 Aligned_cols=6 Identities=33% Similarity=0.777 Sum_probs=2.1
Q ss_pred HHHHHH
Q 035703 39 IMLASY 44 (139)
Q Consensus 39 ~~~~~~ 44 (139)
++++.+
T Consensus 12 ~~~~~~ 17 (560)
T PF06160_consen 12 IYIIGY 17 (560)
T ss_pred HHHHHH
Confidence 333333
No 408
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=23.96 E-value=37 Score=27.23 Aligned_cols=19 Identities=26% Similarity=0.552 Sum_probs=11.3
Q ss_pred ccchhhHHHHHHHHHHHHH
Q 035703 18 TGVGLGYGIAIAVSILVLI 36 (139)
Q Consensus 18 ~~~~~~~~i~i~l~~~~~i 36 (139)
++|.-+-+.+|.+++++++
T Consensus 362 s~LstgaIaGIsvavvvvV 380 (397)
T PF03302_consen 362 SGLSTGAIAGISVAVVVVV 380 (397)
T ss_pred ccccccceeeeeehhHHHH
Confidence 4566666666666655554
No 409
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=23.75 E-value=1.1e+02 Score=15.02 Aligned_cols=7 Identities=14% Similarity=0.349 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 035703 29 AVSILVL 35 (139)
Q Consensus 29 ~l~~~~~ 35 (139)
+.+.+++
T Consensus 6 i~g~llv 12 (29)
T PRK14750 6 VCGALLV 12 (29)
T ss_pred HHHHHHH
Confidence 3333333
No 410
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=23.64 E-value=45 Score=23.64 Aligned_cols=31 Identities=23% Similarity=0.529 Sum_probs=19.3
Q ss_pred cccCc---ccccCCCceeecCCCCCcccHHHHHHH
Q 035703 79 CSICL---CDYKPKDSVRCIPDCHHCFHADCVDEW 110 (139)
Q Consensus 79 C~ICl---~~~~~~~~~~~lp~C~H~fH~~Ci~~w 110 (139)
|-.|. ++...|..+ .-.+|.-.||+.||-.-
T Consensus 2 C~~C~~~g~~~~kG~Lv-~CQGCs~sYHk~CLG~R 35 (175)
T PF15446_consen 2 CDTCGYEGDDRNKGPLV-YCQGCSSSYHKACLGPR 35 (175)
T ss_pred cccccCCCCCccCCCeE-EcCccChHHHhhhcCCc
Confidence 55663 444444444 34458899999998543
No 411
>PHA03289 envelope glycoprotein I; Provisional
Probab=23.56 E-value=2.3e+02 Score=22.36 Aligned_cols=21 Identities=14% Similarity=0.140 Sum_probs=11.7
Q ss_pred CCCCCCCccCCCCCCccccch
Q 035703 1 MSTANPPVVASTAATTTTGVG 21 (139)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (139)
|...|++.+.+--++.+.-++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~ 262 (352)
T PHA03289 242 LNATNLPLPISNYTDYMSVIL 262 (352)
T ss_pred cccCCCCCcccccchhHHHHH
Confidence 456677765555555554443
No 412
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=23.52 E-value=1.1e+02 Score=15.00 Aligned_cols=7 Identities=14% Similarity=0.491 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 035703 29 AVSILVL 35 (139)
Q Consensus 29 ~l~~~~~ 35 (139)
+.+++++
T Consensus 6 i~G~ilv 12 (29)
T PRK14748 6 ITGVLLV 12 (29)
T ss_pred HHHHHHH
Confidence 3333333
No 413
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.33 E-value=46 Score=22.62 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=14.4
Q ss_pred ccccCcccccCCCceeecCCCCCcccH
Q 035703 78 PCSICLCDYKPKDSVRCIPDCHHCFHA 104 (139)
Q Consensus 78 ~C~ICl~~~~~~~~~~~lp~C~H~fH~ 104 (139)
.=-||.+. ...+.... |||.|+.
T Consensus 59 hlfi~qs~---~~rv~rce-cghsf~d 81 (165)
T COG4647 59 HLFICQSA---QKRVIRCE-CGHSFGD 81 (165)
T ss_pred cEEEEecc---cccEEEEe-ccccccC
Confidence 34466555 23365666 9999974
No 414
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=23.27 E-value=20 Score=19.60 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=13.4
Q ss_pred CCCCcccHHHHHHHHhCCCCCcccCC
Q 035703 97 DCHHCFHADCVDEWLRMSATCPLCRS 122 (139)
Q Consensus 97 ~C~H~fH~~Ci~~wl~~~~~CP~CR~ 122 (139)
.|||.|-..--.. -.....||.|..
T Consensus 10 ~Cg~~fe~~~~~~-~~~~~~CP~Cg~ 34 (52)
T TIGR02605 10 ACGHRFEVLQKMS-DDPLATCPECGG 34 (52)
T ss_pred CCCCEeEEEEecC-CCCCCCCCCCCC
Confidence 4888776421000 012336999987
No 415
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=23.16 E-value=1.3e+02 Score=24.18 Aligned_cols=20 Identities=20% Similarity=0.064 Sum_probs=8.0
Q ss_pred ccccchhhHHHHHHHHHHHH
Q 035703 16 TTTGVGLGYGIAIAVSILVL 35 (139)
Q Consensus 16 ~~~~~~~~~~i~i~l~~~~~ 35 (139)
+.-.+.+...++.+...+.+
T Consensus 15 Y~qsL~~la~v~~~~l~l~L 34 (406)
T PF04906_consen 15 YQQSLLILASVAAACLALSL 34 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444333333333
No 416
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=23.15 E-value=3.3e+02 Score=20.45 Aligned_cols=18 Identities=11% Similarity=0.058 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHhhhhhhh
Q 035703 36 ISTIMLASYACIRVKANA 53 (139)
Q Consensus 36 i~~~~~~~~~~~r~~~~~ 53 (139)
|.+..+.+...+|.-.+.
T Consensus 200 itl~vf~LvgLyr~C~k~ 217 (259)
T PF07010_consen 200 ITLSVFTLVGLYRMCWKT 217 (259)
T ss_pred HHHHHHHHHHHHHHhhcC
Confidence 333333333444444443
No 417
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=23.11 E-value=2e+02 Score=21.71 Aligned_cols=12 Identities=17% Similarity=0.321 Sum_probs=4.5
Q ss_pred hhhHHHHHHHHH
Q 035703 21 GLGYGIAIAVSI 32 (139)
Q Consensus 21 ~~~~~i~i~l~~ 32 (139)
+..+.+-++++.
T Consensus 218 ~~~~~~~~~~~~ 229 (249)
T PRK15348 218 LMKYPYQLMLSL 229 (249)
T ss_pred HHHHHHHHHHHH
Confidence 333443333333
No 418
>PF06170 DUF983: Protein of unknown function (DUF983); InterPro: IPR009325 This family consists of several bacterial proteins of unknown function.
Probab=23.05 E-value=31 Score=21.50 Aligned_cols=26 Identities=23% Similarity=0.514 Sum_probs=16.9
Q ss_pred HHHhCCCCCcccCCCCCCCCcccCCC
Q 035703 109 EWLRMSATCPLCRSSPATPLAEVVPL 134 (139)
Q Consensus 109 ~wl~~~~~CP~CR~~v~~~~~~~~~~ 134 (139)
.+++-...|+.|..+....-++.-|.
T Consensus 3 g~Lk~~~~C~~CG~d~~~~~adDgPA 28 (86)
T PF06170_consen 3 GYLKVAPRCPHCGLDYSHARADDGPA 28 (86)
T ss_pred ccccCCCcccccCCccccCCcCccch
Confidence 35666778888888887544444443
No 419
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=22.96 E-value=1.9e+02 Score=23.29 Aligned_cols=24 Identities=25% Similarity=0.587 Sum_probs=11.2
Q ss_pred ccccCcccccCCCceeecCCCCCcc
Q 035703 78 PCSICLCDYKPKDSVRCIPDCHHCF 102 (139)
Q Consensus 78 ~C~ICl~~~~~~~~~~~lp~C~H~f 102 (139)
.|+-|-..+..+++. ..|.|||..
T Consensus 217 ~C~~Cd~~~~~~~~a-~CpRC~~~L 240 (403)
T TIGR00155 217 SCSACHTTILPAQEP-VCPRCSTPL 240 (403)
T ss_pred cCCCCCCccCCCCCc-CCcCCCCcc
Confidence 377775544333322 233355544
No 420
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=22.94 E-value=59 Score=26.64 Aligned_cols=32 Identities=28% Similarity=0.607 Sum_probs=18.7
Q ss_pred CccccCcccccCC-Cceeec--CCCCCcccHHHHHH
Q 035703 77 GPCSICLCDYKPK-DSVRCI--PDCHHCFHADCVDE 109 (139)
Q Consensus 77 ~~C~ICl~~~~~~-~~~~~l--p~C~H~fH~~Ci~~ 109 (139)
-.|.||.. |..+ +...++ ..|||+=|.+|--.
T Consensus 129 C~C~iC~k-fD~~~n~~~Wi~Cd~CgH~cH~dCALr 163 (446)
T PF07227_consen 129 CMCCICSK-FDDNKNTCSWIGCDVCGHWCHLDCALR 163 (446)
T ss_pred CCccccCC-cccCCCCeeEEeccCCCceehhhhhcc
Confidence 34778854 4322 222222 25899999999543
No 421
>PF09356 Phage_BR0599: Phage conserved hypothetical protein BR0599; InterPro: IPR018964 This entry describes the C-terminal region of a family of proteins found almost exclusively in phage or in prophage regions of bacterial genomes, including the phage-like Rhodobacter capsulatus (Rhodopseudomonas capsulata) gene transfer agent, which packages DNA. An apparent exception is Wolbachia pipientis wMel, a bacterial endosymbiont of the fruit fly, which has several candidate phage-related genes physically separate from obvious prophage regions.
Probab=22.80 E-value=1e+02 Score=18.82 Aligned_cols=25 Identities=28% Similarity=0.628 Sum_probs=19.5
Q ss_pred cccCCCceeecCCCCCcccHHHHHHH
Q 035703 85 DYKPKDSVRCIPDCHHCFHADCVDEW 110 (139)
Q Consensus 85 ~~~~~~~~~~lp~C~H~fH~~Ci~~w 110 (139)
.+..++.+.+.+.|.|.+ ..|-.++
T Consensus 40 ~~~~G~~v~l~~GCDkt~-~tC~~kF 64 (80)
T PF09356_consen 40 GLAVGDTVTLYPGCDKTF-ATCRAKF 64 (80)
T ss_pred cCCCCCEEEEEeCCCCCH-HHHHHHh
Confidence 355688899999999977 7776665
No 422
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=22.71 E-value=61 Score=18.90 Aligned_cols=8 Identities=25% Similarity=0.916 Sum_probs=4.2
Q ss_pred cCCCCCcc
Q 035703 95 IPDCHHCF 102 (139)
Q Consensus 95 lp~C~H~f 102 (139)
.|.|||.|
T Consensus 56 Cp~c~r~Y 63 (68)
T PF03966_consen 56 CPECGREY 63 (68)
T ss_dssp ETTTTEEE
T ss_pred cCCCCCEE
Confidence 34466655
No 423
>PF12773 DZR: Double zinc ribbon
Probab=22.64 E-value=80 Score=16.87 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=0.0
Q ss_pred cccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCCCC
Q 035703 79 CSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPATP 127 (139)
Q Consensus 79 C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~~~ 127 (139)
|+-|-..+..+...-.. ||+.+- .-......||.|.+.+...
T Consensus 1 Cp~Cg~~~~~~~~fC~~--CG~~l~-----~~~~~~~~C~~Cg~~~~~~ 42 (50)
T PF12773_consen 1 CPHCGTPNPDDAKFCPH--CGTPLP-----PPDQSKKICPNCGAENPPN 42 (50)
T ss_pred CCCcCCcCCccccCChh--hcCChh-----hccCCCCCCcCCcCCCcCC
No 424
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=22.37 E-value=1.1e+02 Score=22.26 Aligned_cols=58 Identities=14% Similarity=0.038 Sum_probs=0.0
Q ss_pred cCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCccc
Q 035703 9 VASTAATTTTGVGLGYGIAIAVSILVLISTIMLASYACIRVKANANRGGGSGGDYIGR 66 (139)
Q Consensus 9 ~~~~~~~~~~~~~~~~~i~i~l~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 66 (139)
+.++.+.....+.....+...+.++++..++..+.+..++++...........+...+
T Consensus 11 p~gp~a~~i~~L~~~~~~i~~iI~lvv~~lli~~~~kyr~r~~~~~~~~~~~~n~~LE 68 (217)
T TIGR01432 11 PKGPVASSQSDLILYSIVFMLVIVFVVFVLFTIFLVKYRYRKDNGAYSPKMHGNAILE 68 (217)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCcchhh
No 425
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=22.34 E-value=1.7e+02 Score=16.87 Aligned_cols=23 Identities=0% Similarity=0.088 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 035703 23 GYGIAIAVSILVLISTIMLASYA 45 (139)
Q Consensus 23 ~~~i~i~l~~~~~i~~~~~~~~~ 45 (139)
.....+++.+++++++.++..|+
T Consensus 37 ~~~~i~~~~~i~~l~v~~~~~~~ 59 (59)
T PF09889_consen 37 KTQYIFFGIFILFLAVWIFMTFF 59 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
No 426
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=22.33 E-value=1.3e+02 Score=15.66 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=0.0
Q ss_pred CCCCCCCccCCCCCCccccchhhHHHHHHHHHHHHHH
Q 035703 1 MSTANPPVVASTAATTTTGVGLGYGIAIAVSILVLIS 37 (139)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~l~~~~~i~ 37 (139)
|...||-.-+ --+..-++-+++.+++...++.+
T Consensus 2 m~~~NpN~q~----VELNRTSLy~GlLlifvl~vLFs 34 (39)
T PRK00753 2 ERNPNPNKQP----VELNRTSLYLGLLLVFVLGILFS 34 (39)
T ss_pred CCCCCCCCCC----ceechhhHHHHHHHHHHHHHHHH
No 427
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=22.33 E-value=1.3e+02 Score=23.85 Aligned_cols=53 Identities=11% Similarity=0.055 Sum_probs=0.0
Q ss_pred CCCCCccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHH------------HHHhhhhhhhcc
Q 035703 3 TANPPVVASTAATTTTGVGLGYGIAIAVSILVLISTIMLAS------------YACIRVKANANR 55 (139)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~i~i~l~~~~~i~~~~~~~------------~~~~r~~~~~~~ 55 (139)
..+|+-+-.+..++-.++.+...+++++.+++++.+++.++ ++..|++++..+
T Consensus 22 ~~~~Gyv~i~~~~~~ie~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~r~~~k~~~ 86 (409)
T TIGR00540 22 AGHQGYVLIETANRIIEMSITGLAIFFIIALAIIFAFEWGLRRFFRLGAHSRGWFSGRKRRKAQK 86 (409)
T ss_pred cCCCCeEEEEECCEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
No 428
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=22.30 E-value=1.8e+02 Score=19.62 Aligned_cols=32 Identities=13% Similarity=0.218 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 035703 20 VGLGYGIAIAVSILVLISTIMLASYACIRVKA 51 (139)
Q Consensus 20 ~~~~~~i~i~l~~~~~i~~~~~~~~~~~r~~~ 51 (139)
+.+.++..++-.+.++++++++-.+++.+...
T Consensus 3 i~l~~~~~~~qli~Flil~~~l~kfl~kPi~~ 34 (141)
T PRK08476 3 LDVNPYLMLATFVVFLLLIVILNSWLYKPLLK 34 (141)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 429
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=22.22 E-value=1.7e+02 Score=16.85 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCC
Q 035703 20 VGLGYGIAIAVSILVLISTIMLASYACIRVKANANRGGGS 59 (139)
Q Consensus 20 ~~~~~~i~i~l~~~~~i~~~~~~~~~~~r~~~~~~~~~~~ 59 (139)
+.++-.+...+.+.++++....+..+.+|.....+.+.+.
T Consensus 1 M~i~~~Iy~~~Vi~l~vl~~~~Ftl~IRri~~~s~~kkq~ 40 (58)
T PF13314_consen 1 MNIGDLIYYILVIILIVLFGASFTLFIRRILINSNAKKQD 40 (58)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
No 430
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=22.15 E-value=1.6e+02 Score=18.34 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 035703 24 YGIAIAVSILVLISTIMLASYACIRV 49 (139)
Q Consensus 24 ~~i~i~l~~~~~i~~~~~~~~~~~r~ 49 (139)
+++.=.+.+++++++++++.|...|+
T Consensus 1 Mgl~Da~~~~V~V~IVclliya~YRR 26 (92)
T PHA02681 1 MGLLDALLTVIVISIVCYIVIMMYRR 26 (92)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHh
No 431
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=22.14 E-value=1.2e+02 Score=24.12 Aligned_cols=45 Identities=9% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCccccccccCC
Q 035703 29 AVSILVLISTIMLASYACIRVKANANRGGGSGGDYIGREYENART 73 (139)
Q Consensus 29 ~l~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (139)
+.+.++++++++.+.++.++.++++.++.+.+.+........+..
T Consensus 303 v~~~~vli~vl~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 347 (361)
T PF12259_consen 303 VCGAIVLIIVLISLAWLYRTFRRRQLRSAQNPVNVVDGLQDSKNE 347 (361)
T ss_pred hhHHHHHHHHHHHHHhheeehHHHHhhhccCCccccccccccccc
No 432
>PF10764 Gin: Inhibitor of sigma-G Gin; InterPro: IPR019700 Gin allows sigma-F to delay late forespore transcription by preventing sigma-G to take over before the cell has reached a critical stage of development. Gin is also known as CsfB [].
Probab=22.09 E-value=51 Score=18.00 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=0.0
Q ss_pred ccccCcccccCCCceeecCCCCCcccHHH
Q 035703 78 PCSICLCDYKPKDSVRCIPDCHHCFHADC 106 (139)
Q Consensus 78 ~C~ICl~~~~~~~~~~~lp~C~H~fH~~C 106 (139)
.|.||-+.-.+|-.+ .|+.++.+|
T Consensus 1 ~CiiC~~~~~~GI~I-----~~~fIC~~C 24 (46)
T PF10764_consen 1 KCIICGKEKEEGIHI-----YGKFICSDC 24 (46)
T ss_pred CeEeCCCcCCCCEEE-----ECeEehHHH
No 433
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=22.07 E-value=3.1e+02 Score=19.66 Aligned_cols=55 Identities=13% Similarity=0.207 Sum_probs=0.0
Q ss_pred CCCCccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCC
Q 035703 4 ANPPVVASTAATTTTGVGLGYGIAIAVSILVLISTIMLASYACIRVKANANRGGGSGGD 62 (139)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~i~i~l~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~~ 62 (139)
++...+| +...+.++++.+.+.-.++.++++.+.+.|...-++.+.......+++
T Consensus 43 ~~~~~~~----~~~~G~~~gl~~a~~gl~~l~~si~~~fry~Rlar~L~~~~~~~~P~k 97 (183)
T PF12263_consen 43 SGRATSP----NRNPGLGIGLFLAICGLVALFFSIFWSFRYTRLARRLRSPNPAKRPSK 97 (183)
T ss_pred cccCCCC----CcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCH
No 434
>PF07948 Nairovirus_M: Nairovirus M polyprotein-like; InterPro: IPR012487 The sequences in this family are similar to the Dugbe virus (Dugbe nairovirus) M polyprotein precursor (Q02004 from SWISSPROT), which includes glycoproteins G1 and G2. Both are thought to be inserted in the membrane of the Golgi complex of the infected host cell, and G1 is known to have a role in infection of vertebrate hosts []. ; PDB: 2L7X_A.
Probab=22.05 E-value=11 Score=31.41 Aligned_cols=91 Identities=13% Similarity=0.191 Sum_probs=0.0
Q ss_pred CCCCCCCccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCC----CCCccccccccCCC--
Q 035703 1 MSTANPPVVASTAATTTTGVGLGYGIAIAVSILVLISTIMLASYACIRVKANANRGGGSG----GDYIGREYENARTN-- 74 (139)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~l~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~----~~~~~~~~~~~~~~-- 74 (139)
||.-..+. -+..+||+++-.|...+-.++..+++++-...+.-++.+...++. +......++.+-.+
T Consensus 444 MS~rP~t~-------maf~~W~~~GYvITCI~~~ilyy~ii~i~~~~Kk~kq~rE~k~~~C~kCEq~~vN~~DqElHdLN 516 (645)
T PF07948_consen 444 MSNRPKTT-------MAFLFWFSFGYVITCIACFILYYLIIFIGTLGKKLKQYRELKGQTCIKCEQKPVNAIDQELHDLN 516 (645)
T ss_dssp -------------------------------------------------------------TTT----SSHHHHHHHHHH
T ss_pred cCCCchHH-------HHHHHHHhccHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCceeeeecccccchhhHHHHhcC
Q ss_pred -CCCccccCcccccCCCceeecCCC
Q 035703 75 -DYGPCSICLCDYKPKDSVRCIPDC 98 (139)
Q Consensus 75 -~~~~C~ICl~~~~~~~~~~~lp~C 98 (139)
....||-|-..+.++...+..+.|
T Consensus 517 CsyNiCPYCanRLs~eGL~RHV~~C 541 (645)
T PF07948_consen 517 CSYNICPYCANRLSDEGLVRHVPQC 541 (645)
T ss_dssp HTTT--TTT-----TTTHHHHHTT-
T ss_pred CCcccChhhhhccCccchhhhcccC
No 435
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=22.05 E-value=68 Score=23.84 Aligned_cols=21 Identities=29% Similarity=0.781 Sum_probs=0.0
Q ss_pred cHHHHHHHHhCCCCCcccCCC
Q 035703 103 HADCVDEWLRMSATCPLCRSS 123 (139)
Q Consensus 103 H~~Ci~~wl~~~~~CP~CR~~ 123 (139)
|..|-.+-=.+-..||+|++.
T Consensus 197 C~sC~qqIHRNAPiCPlCK~K 217 (230)
T PF10146_consen 197 CQSCHQQIHRNAPICPLCKAK 217 (230)
T ss_pred hHhHHHHHhcCCCCCcccccc
No 436
>PRK11595 DNA utilization protein GntX; Provisional
Probab=21.85 E-value=85 Score=22.91 Aligned_cols=38 Identities=18% Similarity=0.479 Sum_probs=0.0
Q ss_pred cccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 79 CSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 79 C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
|.+|-+.+..+ .+.+|..|...+-.....||.|-.++.
T Consensus 8 C~~C~~~~~~~---------~~~lC~~C~~~l~~~~~~C~~Cg~~~~ 45 (227)
T PRK11595 8 CWLCRMPLALS---------HWGICSVCSRALRTLKTCCPQCGLPAT 45 (227)
T ss_pred CccCCCccCCC---------CCcccHHHHhhCCcccCcCccCCCcCC
No 437
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=21.74 E-value=1.6e+02 Score=24.77 Aligned_cols=31 Identities=10% Similarity=-0.076 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 035703 22 LGYGIAIAVSILVLISTIMLASYACIRVKAN 52 (139)
Q Consensus 22 ~~~~i~i~l~~~~~i~~~~~~~~~~~r~~~~ 52 (139)
..+.+..+++..++++++.++.++.+|+|..
T Consensus 522 ~~~~~~~i~~pp~~~l~~G~~~~~~Rrr~~~ 552 (552)
T TIGR03521 522 TTWQLINIGLPILLLLLFGLSFTYIRKRKYA 552 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 438
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=21.64 E-value=1.3e+02 Score=18.21 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCC
Q 035703 25 GIAIAVSILVLISTIMLASYACIRVKANANRGG 57 (139)
Q Consensus 25 ~i~i~l~~~~~i~~~~~~~~~~~r~~~~~~~~~ 57 (139)
++.+....+.+++.+++.....++..+..+.++
T Consensus 12 gL~ls~i~V~~~~~~wi~~Ra~~~~DKT~~eRQ 44 (72)
T PF13268_consen 12 GLLLSSILVLLVSGIWILWRALRKKDKTAKERQ 44 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHH
No 439
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.62 E-value=80 Score=19.16 Aligned_cols=55 Identities=33% Similarity=0.627 Sum_probs=0.0
Q ss_pred cccCcccccCCCceeecCCCC--CcccHHHHHHHHhCCCCCcccCCCCCCCCcccCCCcccCC
Q 035703 79 CSICLCDYKPKDSVRCIPDCH--HCFHADCVDEWLRMSATCPLCRSSPATPLAEVVPLASHAR 139 (139)
Q Consensus 79 C~ICl~~~~~~~~~~~lp~C~--H~fH~~Ci~~wl~~~~~CP~CR~~v~~~~~~~~~~~~~~~ 139 (139)
|--|-.++-.+..-... |. |.|+.+|.+.-|.. .||.|--.++.. .+.|.+--+|
T Consensus 8 CECCDrDLpp~s~dA~I--CtfEcTFCadCae~~l~g--~CPnCGGelv~R--P~RPaa~L~r 64 (84)
T COG3813 8 CECCDRDLPPDSTDARI--CTFECTFCADCAENRLHG--LCPNCGGELVAR--PIRPAAKLAR 64 (84)
T ss_pred CcccCCCCCCCCCceeE--EEEeeehhHhHHHHhhcC--cCCCCCchhhcC--cCChHHHHhh
No 440
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=21.51 E-value=1.9e+02 Score=22.41 Aligned_cols=76 Identities=16% Similarity=0.369 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCccccccccCCCCCCccccC--------cccccCCCceeecCCCC
Q 035703 28 IAVSILVLISTIMLASYACIRVKANANRGGGSGGDYIGREYENARTNDYGPCSIC--------LCDYKPKDSVRCIPDCH 99 (139)
Q Consensus 28 i~l~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~IC--------l~~~~~~~~~~~lp~C~ 99 (139)
+......++-..+.+++.....+....+ ....+.-..||+| ....+..+..|.+. |+
T Consensus 151 ~ss~~~~fi~AAl~lyw~q~a~~i~~~~--------------~~e~e~~~~CPvCGS~PvaSmV~~g~~~~GlRYL~-Cs 215 (308)
T COG3058 151 VSSAKAPFIWAALSLYWAQMAQGIPGKA--------------RVENESRQYCPVCGSMPVASMVQIGETEQGLRYLH-CS 215 (308)
T ss_pred hhHhHhHHHHHHHHHHHHHHHhcCCccc--------------cccccccccCCCcCCCCcceeeeecCccccchhhh-hh
Q ss_pred CcccHHHHHHHHhCCCCCcccCCC
Q 035703 100 HCFHADCVDEWLRMSATCPLCRSS 123 (139)
Q Consensus 100 H~fH~~Ci~~wl~~~~~CP~CR~~ 123 (139)
-|...|...+..|-.|...
T Consensus 216 -----lC~teW~~VR~KC~nC~~t 234 (308)
T COG3058 216 -----LCETEWHYVRVKCSNCEQS 234 (308)
T ss_pred -----hHHHHHHHHHHHhcccccc
No 441
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=21.37 E-value=95 Score=27.36 Aligned_cols=37 Identities=22% Similarity=0.201 Sum_probs=0.0
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 035703 15 TTTTGVGLGYGIAIAVSILVLISTIMLASYACIRVKA 51 (139)
Q Consensus 15 ~~~~~~~~~~~i~i~l~~~~~i~~~~~~~~~~~r~~~ 51 (139)
+.+.++||+.++..++.+..+++.+-+..|+.+....
T Consensus 765 dp~N~fWf~l~~c~~~liP~ii~avkL~k~yrrm~~~ 801 (806)
T PF05478_consen 765 DPINGFWFGLGWCTLFLIPSIIFAVKLAKYYRRMDPE 801 (806)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
No 442
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=21.31 E-value=1.3e+02 Score=21.68 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 035703 26 IAIAVSILVLISTIMLASYACIRVKANA 53 (139)
Q Consensus 26 i~i~l~~~~~i~~~~~~~~~~~r~~~~~ 53 (139)
|.|+++++++++.+++.+++..+.....
T Consensus 1 ~~ii~~i~~~~vG~~~G~~~~~~~~~~~ 28 (201)
T PF12072_consen 1 MIIIIAIVALIVGIGIGYLVRKKINRKK 28 (201)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH
No 443
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=21.12 E-value=67 Score=24.03 Aligned_cols=21 Identities=29% Similarity=0.765 Sum_probs=0.0
Q ss_pred cHHHHHHHHhCCCCCcccCCC
Q 035703 103 HADCVDEWLRMSATCPLCRSS 123 (139)
Q Consensus 103 H~~Ci~~wl~~~~~CP~CR~~ 123 (139)
|..|-.+--.+-..||+|+..
T Consensus 252 ClsChqqIHRNAPiCPlCKaK 272 (286)
T KOG4451|consen 252 CLSCHQQIHRNAPICPLCKAK 272 (286)
T ss_pred HHHHHHHHhcCCCCCcchhhc
No 444
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=21.12 E-value=25 Score=19.90 Aligned_cols=9 Identities=44% Similarity=1.198 Sum_probs=0.0
Q ss_pred CCcccCCCC
Q 035703 116 TCPLCRSSP 124 (139)
Q Consensus 116 ~CP~CR~~v 124 (139)
+||.|.+.+
T Consensus 26 tCP~C~a~~ 34 (54)
T PF09237_consen 26 TCPICGAVI 34 (54)
T ss_dssp E-TTT--EE
T ss_pred CCCcchhhc
No 445
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=21.11 E-value=1.6e+02 Score=15.97 Aligned_cols=27 Identities=19% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 035703 24 YGIAIAVSILVLISTIMLASYACIRVK 50 (139)
Q Consensus 24 ~~i~i~l~~~~~i~~~~~~~~~~~r~~ 50 (139)
..+.+.+++++.+..+.++++..+..+
T Consensus 3 l~~lip~sl~l~~~~l~~f~Wavk~GQ 29 (45)
T PF03597_consen 3 LYILIPVSLILGLIALAAFLWAVKSGQ 29 (45)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHccCC
No 446
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=21.07 E-value=1.5e+02 Score=18.50 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 035703 21 GLGYGIAIAVSILVLISTIMLA 42 (139)
Q Consensus 21 ~~~~~i~i~l~~~~~i~~~~~~ 42 (139)
|-.|+...++++++++..+++.
T Consensus 60 W~~fg~~~vVGvvLlv~viwLl 81 (87)
T PF11190_consen 60 WGDFGATVVVGVVLLVFVIWLL 81 (87)
T ss_pred HHHhhhHHHHHHHHHHHHHHHH
No 447
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=21.00 E-value=2.2e+02 Score=18.65 Aligned_cols=33 Identities=15% Similarity=0.280 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 035703 20 VGLGYGIAIAVSILVLISTIMLASYACIRVKAN 52 (139)
Q Consensus 20 ~~~~~~i~i~l~~~~~i~~~~~~~~~~~r~~~~ 52 (139)
++-++.+++.+.+++++++.++.++........
T Consensus 4 I~~KL~~~f~~~~~l~~~~~~~~~~~l~~~~~~ 36 (181)
T PF12729_consen 4 IRTKLILGFGLIILLLLIVGIVGLYSLSQINQN 36 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 448
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=20.98 E-value=54 Score=26.56 Aligned_cols=60 Identities=15% Similarity=0.273 Sum_probs=0.0
Q ss_pred ccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCCCCCc-ccCCCcccCC
Q 035703 78 PCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPATPLA-EVVPLASHAR 139 (139)
Q Consensus 78 ~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~~~~~-~~~~~~~~~~ 139 (139)
+|+||+-.+-..-..... |.-..+.+|+.+.-.-+..=|.-.+.+++++- ..+-.+++.+
T Consensus 76 ecpicflyyps~~n~~rc--C~~~Ic~ecf~~~~~~~~~~pt~~a~v~~~~~f~~~s~p~~~~ 136 (482)
T KOG2789|consen 76 ECPICFLYYPSAKNLVRC--CSETICGECFAPFGCYSFEKPTYDATVVKNLIFKRKSAPFYTP 136 (482)
T ss_pred cCceeeeecccccchhhh--hccchhhhheecccCCCcccCcccccccccccccccccccccc
No 449
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=20.93 E-value=2.5e+02 Score=18.13 Aligned_cols=44 Identities=14% Similarity=0.190 Sum_probs=0.0
Q ss_pred CCCCCCccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 035703 2 STANPPVVASTAATTTTGVGLGYGIAIAVSILVLISTIMLASYACIRV 49 (139)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~l~~~~~i~~~~~~~~~~~r~ 49 (139)
++++|+... ...+.+-=--.+.|.+..+++..-+++.+++|.|.
T Consensus 1 ~a~tpvs~~----KPsGsL~PWeIfLItLasVvvavGl~aGLfFcvR~ 44 (106)
T PF14654_consen 1 SAHTPVSEV----KPSGSLKPWEIFLITLASVVVAVGLFAGLFFCVRN 44 (106)
T ss_pred CCcCccccc----ccCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhh
No 450
>PF14319 Zn_Tnp_IS91: Transposase zinc-binding domain
Probab=20.92 E-value=73 Score=20.71 Aligned_cols=32 Identities=28% Similarity=0.667 Sum_probs=0.0
Q ss_pred CcccccCCCceeecCCCCCc--ccHHHHHHHHhCCCCCccc
Q 035703 82 CLCDYKPKDSVRCIPDCHHC--FHADCVDEWLRMSATCPLC 120 (139)
Q Consensus 82 Cl~~~~~~~~~~~lp~C~H~--fH~~Ci~~wl~~~~~CP~C 120 (139)
|-..--......-.. |||. +.-.| +++.||.|
T Consensus 33 Crt~~~G~~~~~C~~-Cg~~~~~~~SC------k~R~CP~C 66 (111)
T PF14319_consen 33 CRTEALGFHRYRCED-CGHEKIVYNSC------KNRHCPSC 66 (111)
T ss_pred cCCccCCcceeecCC-CCceEEecCcc------cCcCCCCC
No 451
>PF15345 TMEM51: Transmembrane protein 51
Probab=20.91 E-value=2.6e+02 Score=20.91 Aligned_cols=76 Identities=9% Similarity=0.091 Sum_probs=0.0
Q ss_pred CCCCCCccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc--cCCCCCCCCccccccccCCCCCCc
Q 035703 2 STANPPVVASTAATTTTGVGLGYGIAIAVSILVLISTIMLASYACIRVKANAN--RGGGSGGDYIGREYENARTNDYGP 78 (139)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~l~~~~~i~~~~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 78 (139)
+.+|....++.-+..-..+.++|.+.-+ ++.++++-+++-..-.+|.++... +......-........+.....++
T Consensus 40 ~~~~n~~~~~~~~~ksKt~SVAyVLVG~-Gv~LLLLSICL~IR~KRr~rq~~e~~Q~~~~~~~~a~~~~~q~e~~~~e~ 117 (233)
T PF15345_consen 40 PQGSNSTEPSDGNLKSKTFSVAYVLVGS-GVALLLLSICLSIRDKRRRRQGEERIQHQAGAEPQAQEEDSQQEEESQEE 117 (233)
T ss_pred CCCCCCcCCCCCcccceeEEEEEehhhH-HHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhhc
No 452
>COG3924 Predicted membrane protein [Function unknown]
Probab=20.64 E-value=2.1e+02 Score=17.34 Aligned_cols=38 Identities=18% Similarity=0.117 Sum_probs=0.0
Q ss_pred CCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035703 11 STAATTTTGVGLGYGIAIAVSILVLISTIMLASYACIR 48 (139)
Q Consensus 11 ~~~~~~~~~~~~~~~i~i~l~~~~~i~~~~~~~~~~~r 48 (139)
|.-++.+.++..-|-++-+..-++++.+......+..+
T Consensus 33 p~~t~G~~gfP~WFE~aCi~lPllFi~l~~~mvkfif~ 70 (80)
T COG3924 33 PGNTPGFTGFPLWFEMACILLPLLFIVLCWAMVKFIFR 70 (80)
T ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 453
>PF10215 Ost4: Oligosaccaryltransferase ; InterPro: IPR018943 Ost4 is a very short, approximately 30 residues, enzyme found from fungi to vertebrates. It is a member of the ER oligosaccaryltansferase complex, 2.4.1.119 from EC, that catalyses the asparagine-linked glycosylation of proteins. It appears to be an integral membrane protein that mediates the en bloc transfer of a pre-assembled high-mannose oligosaccharide onto asparagine residues of nascent polypeptides as they enter the lumen of the rough endoplasmic reticulum. ; PDB: 1RKL_A 2LAT_A.
Probab=20.52 E-value=1.4e+02 Score=15.29 Aligned_cols=21 Identities=10% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 035703 24 YGIAIAVSILVLISTIMLASY 44 (139)
Q Consensus 24 ~~i~i~l~~~~~i~~~~~~~~ 44 (139)
+.+++++|++.++++++.-+.
T Consensus 8 ~~lan~lG~~~~~LIVlYH~v 28 (35)
T PF10215_consen 8 YTLANFLGVAAMVLIVLYHFV 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
No 454
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=20.50 E-value=1e+02 Score=15.48 Aligned_cols=25 Identities=16% Similarity=0.525 Sum_probs=0.0
Q ss_pred ccccCccccc-------CCCceeecCCCCCcc
Q 035703 78 PCSICLCDYK-------PKDSVRCIPDCHHCF 102 (139)
Q Consensus 78 ~C~ICl~~~~-------~~~~~~~lp~C~H~f 102 (139)
.|+-|-..|. .+.....-+.|||.|
T Consensus 4 ~CP~C~~~~~v~~~~~~~~~~~v~C~~C~~~~ 35 (38)
T TIGR02098 4 QCPNCKTSFRVVDSQLGANGGKVRCGKCGHVW 35 (38)
T ss_pred ECCCCCCEEEeCHHHcCCCCCEEECCCCCCEE
No 455
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=20.45 E-value=68 Score=28.58 Aligned_cols=34 Identities=15% Similarity=0.347 Sum_probs=0.0
Q ss_pred ccCCCCCCccccCccccc--------CCCceeecCCCCCcccHHH
Q 035703 70 NARTNDYGPCSICLCDYK--------PKDSVRCIPDCHHCFHADC 106 (139)
Q Consensus 70 ~~~~~~~~~C~ICl~~~~--------~~~~~~~lp~C~H~fH~~C 106 (139)
..+.+..+.|..|-..|. ....++ .||++||..|
T Consensus 454 qpDDEaSdtC~~C~kkFfSlsK~L~~RKHHCR---kCGrVFC~~C 495 (1374)
T PTZ00303 454 QKDDESSDSCPSCGRAFISLSRPLGTRAHHCR---SCGIRLCVFC 495 (1374)
T ss_pred CCCcccCCcccCcCCccccccccccccccccc---CCccccCccc
No 456
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=20.39 E-value=2.6e+02 Score=18.50 Aligned_cols=29 Identities=14% Similarity=0.039 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 035703 23 GYGIAIAVSILVLISTIMLASYACIRVKA 51 (139)
Q Consensus 23 ~~~i~i~l~~~~~i~~~~~~~~~~~r~~~ 51 (139)
.+..+++++|+++--+.+.++.+..+.++
T Consensus 10 a~Ia~mVlGFi~fWPlGla~Lay~iw~~r 38 (115)
T PF11014_consen 10 AWIAAMVLGFIVFWPLGLALLAYMIWGKR 38 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 457
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=20.39 E-value=2.3e+02 Score=23.14 Aligned_cols=45 Identities=13% Similarity=-0.028 Sum_probs=0.0
Q ss_pred CCCCCCCccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 035703 1 MSTANPPVVASTAATTTTGVGLGYGIAIAVSILVLISTIMLASYACIRVK 50 (139)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~l~~~~~i~~~~~~~~~~~r~~ 50 (139)
.+++..|..| ......+...+++++++++.++++++.-++-.+.+
T Consensus 399 i~~A~~P~~P-----~~P~~~~~l~~g~~~Gl~lg~~~~~l~e~ld~~i~ 443 (498)
T TIGR03007 399 IDPPIVPSKP-----SGPNRPLLMLAGLLGGLGAGIGLAFLLSQLRPTVR 443 (498)
T ss_pred eCCCCCCCCC-----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCC
No 458
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=20.21 E-value=2.1e+02 Score=18.90 Aligned_cols=38 Identities=18% Similarity=0.189 Sum_probs=0.0
Q ss_pred CCccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHH
Q 035703 6 PPVVASTAATTTTGVGLGYGIAIAVSILVLISTIMLAS 43 (139)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~i~i~l~~~~~i~~~~~~~ 43 (139)
|.....+.+-.-+-+.+++.+.+.+...++.++++++.
T Consensus 49 ~~~~~~sg~g~~~lffvglii~LivSLaLVsFvIFLii 86 (128)
T PF15145_consen 49 PGTGTNSGNGSRSLFFVGLIIVLIVSLALVSFVIFLII 86 (128)
T ss_pred cccCCCCCCCceeehHHHHHHHHHHHHHHHHHHHHhee
No 459
>PF11682 DUF3279: Protein of unknown function (DUF3279); InterPro: IPR021696 This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.
Probab=20.15 E-value=55 Score=22.09 Aligned_cols=18 Identities=28% Similarity=0.857 Sum_probs=0.0
Q ss_pred CCCcccHHHHHHHHhCCCCCcccCCCC
Q 035703 98 CHHCFHADCVDEWLRMSATCPLCRSSP 124 (139)
Q Consensus 98 C~H~fH~~Ci~~wl~~~~~CP~CR~~v 124 (139)
|+|.||. ++.||.|+.-+
T Consensus 103 C~~~Y~G---------eK~C~~C~tGi 120 (128)
T PF11682_consen 103 CGNHYHG---------EKYCPKCGTGI 120 (128)
T ss_pred CCCccCc---------CEecCCCCCcc
No 460
>KOG4430 consensus Topoisomerase I-binding arginine-serine-rich protein [Transcription]
Probab=20.02 E-value=45 Score=28.06 Aligned_cols=57 Identities=19% Similarity=0.268 Sum_probs=0.0
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCCCCCccc
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPATPLAEV 131 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~~~~~~~ 131 (139)
....|.+|+......++...+..|.|-+...|+..|=.....|+.|++.+.....+.
T Consensus 259 ~~~~~~~~~~~~~~~eqk~l~~~~~~~~g~tsl~~e~~~~~v~~~~~tk~~~~~~e~ 315 (553)
T KOG4430|consen 259 NKNACGLCLSEADAKEQKGLEGNNQRQTGATSLMEEEAVESVCPLRVTKVRTISKEA 315 (553)
T ss_pred cccchhhchhhHhHHHhhhhhhcccchhhhhhhhhhhhhhhhhhccccccccccccc
Done!