Query 035703
Match_columns 139
No_of_seqs 157 out of 1568
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 08:56:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035703.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035703hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x4j_A Ring finger protein 38; 99.7 2.5E-18 8.5E-23 104.9 5.7 54 73-127 20-73 (75)
2 1iym_A EL5; ring-H2 finger, ub 99.7 1.5E-18 5.2E-23 99.6 4.3 52 74-125 3-54 (55)
3 2ep4_A Ring finger protein 24; 99.7 3.9E-18 1.3E-22 103.6 6.0 54 73-127 12-65 (74)
4 2kiz_A E3 ubiquitin-protein li 99.7 5.7E-18 2E-22 101.6 6.5 55 72-127 10-64 (69)
5 2l0b_A E3 ubiquitin-protein li 99.7 3E-18 1E-22 108.4 5.1 53 74-127 38-90 (91)
6 2ect_A Ring finger protein 126 99.7 1.4E-17 4.8E-22 102.2 5.4 55 72-127 11-65 (78)
7 2ecl_A Ring-box protein 2; RNF 99.7 1.2E-17 4.1E-22 103.5 4.5 51 75-125 14-75 (81)
8 3ng2_A RNF4, snurf, ring finge 99.7 5.7E-17 2E-21 97.5 4.4 59 73-134 7-69 (71)
9 1v87_A Deltex protein 2; ring- 99.7 5.5E-17 1.9E-21 106.3 3.9 54 73-127 22-95 (114)
10 2ecm_A Ring finger and CHY zin 99.6 1.3E-16 4.5E-21 91.4 4.7 50 75-125 4-54 (55)
11 2xeu_A Ring finger protein 4; 99.6 1.3E-16 4.3E-21 94.0 3.3 57 75-134 2-62 (64)
12 2ea6_A Ring finger protein 4; 99.6 2.5E-16 8.6E-21 94.0 4.0 52 73-125 12-67 (69)
13 3dpl_R Ring-box protein 1; ubi 99.6 5.1E-16 1.7E-20 100.7 5.4 50 75-125 36-100 (106)
14 2djb_A Polycomb group ring fin 99.6 3.2E-15 1.1E-19 90.3 6.4 52 73-127 12-63 (72)
15 2ecn_A Ring finger protein 141 99.6 7.1E-16 2.4E-20 92.6 2.6 49 74-127 13-61 (70)
16 1chc_A Equine herpes virus-1 r 99.6 2.1E-15 7.2E-20 90.0 4.6 49 75-126 4-52 (68)
17 2d8t_A Dactylidin, ring finger 99.6 1.8E-15 6.2E-20 91.2 4.0 49 73-125 12-60 (71)
18 2ct2_A Tripartite motif protei 99.6 6.2E-15 2.1E-19 92.0 6.1 55 71-126 10-68 (88)
19 2d8s_A Cellular modulator of i 99.6 4E-15 1.4E-19 91.8 5.0 51 74-126 13-70 (80)
20 2ysl_A Tripartite motif-contai 99.5 2.6E-14 8.9E-19 86.2 6.9 51 72-126 16-69 (73)
21 2csy_A Zinc finger protein 183 99.5 1.4E-14 4.8E-19 89.3 5.2 49 73-125 12-60 (81)
22 4a0k_B E3 ubiquitin-protein li 99.5 1.2E-15 4.2E-20 100.4 0.2 50 75-125 47-111 (117)
23 2ecy_A TNF receptor-associated 99.5 2.8E-14 9.4E-19 84.7 5.3 50 73-126 12-62 (66)
24 2yur_A Retinoblastoma-binding 99.5 2.4E-14 8.1E-19 86.9 5.0 51 72-125 11-63 (74)
25 4ayc_A E3 ubiquitin-protein li 99.5 1.4E-14 4.8E-19 97.9 3.6 48 75-126 52-99 (138)
26 2ct0_A Non-SMC element 1 homol 99.5 3.8E-14 1.3E-18 86.0 5.0 56 75-133 14-71 (74)
27 2ecw_A Tripartite motif-contai 99.5 7.7E-14 2.6E-18 86.2 6.4 52 71-126 14-71 (85)
28 1g25_A CDK-activating kinase a 99.5 3.8E-14 1.3E-18 83.8 4.4 57 75-134 2-61 (65)
29 2ecv_A Tripartite motif-contai 99.5 9.5E-14 3.2E-18 85.8 6.4 51 72-126 15-71 (85)
30 1t1h_A Gspef-atpub14, armadill 99.5 6E-14 2.1E-18 85.7 5.1 50 73-126 5-55 (78)
31 4ap4_A E3 ubiquitin ligase RNF 99.5 3.9E-14 1.3E-18 94.3 3.9 53 74-127 5-61 (133)
32 2ysj_A Tripartite motif-contai 99.4 2.5E-13 8.5E-18 79.7 6.3 45 72-120 16-63 (63)
33 3lrq_A E3 ubiquitin-protein li 99.4 5.2E-14 1.8E-18 90.2 3.5 48 74-125 20-69 (100)
34 2egp_A Tripartite motif-contai 99.4 3.9E-14 1.3E-18 86.6 2.1 50 73-126 9-65 (79)
35 2y43_A E3 ubiquitin-protein li 99.4 1.2E-13 4E-18 88.2 4.1 48 75-126 21-69 (99)
36 3fl2_A E3 ubiquitin-protein li 99.4 8.7E-14 3E-18 92.3 3.3 48 75-126 51-99 (124)
37 4ap4_A E3 ubiquitin ligase RNF 99.4 7.3E-14 2.5E-18 93.0 2.8 58 74-134 70-131 (133)
38 2ckl_A Polycomb group ring fin 99.4 2.4E-13 8.2E-18 88.1 4.8 50 74-126 13-62 (108)
39 2ecj_A Tripartite motif-contai 99.4 3.7E-13 1.3E-17 77.5 4.6 44 73-120 12-58 (58)
40 3ztg_A E3 ubiquitin-protein li 99.4 5.9E-13 2E-17 83.7 4.6 51 72-125 9-61 (92)
41 1z6u_A NP95-like ring finger p 99.3 6.2E-13 2.1E-17 91.1 4.0 49 75-127 77-126 (150)
42 2ckl_B Ubiquitin ligase protei 99.3 9.9E-13 3.4E-17 91.2 4.5 49 74-125 52-101 (165)
43 2vje_A E3 ubiquitin-protein li 99.3 6.2E-13 2.1E-17 78.6 2.6 48 74-125 6-56 (64)
44 1e4u_A Transcriptional repress 99.3 4.5E-12 1.5E-16 77.7 6.0 54 73-127 8-63 (78)
45 3hct_A TNF receptor-associated 99.3 1.5E-12 5E-17 85.7 4.0 51 72-126 14-65 (118)
46 1jm7_A BRCA1, breast cancer ty 99.3 1.6E-12 5.5E-17 84.4 4.0 48 75-126 20-70 (112)
47 1rmd_A RAG1; V(D)J recombinati 99.3 1.6E-12 5.4E-17 85.2 3.5 48 75-126 22-70 (116)
48 1wgm_A Ubiquitin conjugation f 99.3 9.1E-12 3.1E-16 79.5 6.7 56 72-133 18-74 (98)
49 3l11_A E3 ubiquitin-protein li 99.3 6E-13 2E-17 87.1 0.7 48 74-125 13-61 (115)
50 2kre_A Ubiquitin conjugation f 99.3 1.2E-11 4.1E-16 79.2 6.4 56 72-133 25-80 (100)
51 2vje_B MDM4 protein; proto-onc 99.3 3.1E-12 1.1E-16 75.3 3.3 50 74-125 5-55 (63)
52 2kr4_A Ubiquitin conjugation f 99.2 6.1E-12 2.1E-16 78.3 4.4 55 73-133 11-65 (85)
53 1bor_A Transcription factor PM 99.2 2.4E-12 8.1E-17 74.0 2.3 47 74-127 4-50 (56)
54 2y1n_A E3 ubiquitin-protein li 99.2 6.2E-12 2.1E-16 97.6 4.9 49 75-127 331-380 (389)
55 3knv_A TNF receptor-associated 99.2 7.6E-12 2.6E-16 84.9 2.6 51 71-125 26-77 (141)
56 3k1l_B Fancl; UBC, ring, RWD, 99.2 4.5E-12 1.5E-16 96.5 1.2 58 74-131 306-378 (381)
57 4ic3_A E3 ubiquitin-protein li 99.2 9.1E-12 3.1E-16 75.5 1.9 44 75-126 23-67 (74)
58 1jm7_B BARD1, BRCA1-associated 99.1 8.5E-12 2.9E-16 81.9 1.5 45 75-125 21-66 (117)
59 2ea5_A Cell growth regulator w 99.1 9.8E-11 3.3E-15 69.8 4.1 51 73-131 12-63 (68)
60 3hcs_A TNF receptor-associated 99.1 8.4E-11 2.9E-15 81.7 4.0 51 72-126 14-65 (170)
61 2yu4_A E3 SUMO-protein ligase 99.1 8.2E-11 2.8E-15 74.4 3.1 50 73-125 4-62 (94)
62 2ecg_A Baculoviral IAP repeat- 99.0 4.5E-11 1.5E-15 72.5 1.6 45 75-127 24-69 (75)
63 2c2l_A CHIP, carboxy terminus 99.0 1.8E-10 6.2E-15 85.2 4.5 49 73-125 205-254 (281)
64 1vyx_A ORF K3, K3RING; zinc-bi 99.0 4.4E-10 1.5E-14 65.4 4.1 48 74-125 4-58 (60)
65 2yho_A E3 ubiquitin-protein li 99.0 9.3E-11 3.2E-15 71.9 1.0 51 75-133 17-68 (79)
66 1wim_A KIAA0161 protein; ring 98.9 4E-10 1.4E-14 71.1 3.1 48 75-123 4-61 (94)
67 2f42_A STIP1 homology and U-bo 98.9 5.9E-10 2E-14 78.2 4.1 57 71-133 101-158 (179)
68 2bay_A PRE-mRNA splicing facto 98.8 1.9E-09 6.5E-14 62.8 2.8 55 77-137 4-59 (61)
69 3htk_C E3 SUMO-protein ligase 98.7 3.6E-09 1.2E-13 78.0 2.4 55 74-133 179-237 (267)
70 3t6p_A Baculoviral IAP repeat- 98.7 2.9E-09 1E-13 81.7 1.6 44 75-126 294-338 (345)
71 3vk6_A E3 ubiquitin-protein li 98.5 1.5E-07 5.1E-12 59.4 4.0 45 78-125 3-48 (101)
72 3nw0_A Non-structural maintena 98.1 2E-06 6.8E-11 62.8 4.4 48 75-125 179-228 (238)
73 2ko5_A Ring finger protein Z; 97.5 7.1E-05 2.4E-09 46.5 3.4 51 73-129 25-76 (99)
74 2lri_C Autoimmune regulator; Z 97.1 0.0006 2E-08 39.9 4.0 50 74-127 10-63 (66)
75 2jun_A Midline-1; B-BOX, TRIM, 96.3 0.0032 1.1E-07 39.3 3.1 34 76-110 3-36 (101)
76 1wil_A KIAA1045 protein; ring 96.2 0.0098 3.3E-07 36.2 4.9 36 73-110 12-47 (89)
77 1we9_A PHD finger family prote 95.8 0.0027 9.1E-08 36.6 0.9 50 74-123 4-58 (64)
78 3lqh_A Histone-lysine N-methyl 95.5 0.006 2E-07 42.6 2.1 50 76-125 2-65 (183)
79 2l5u_A Chromodomain-helicase-D 95.0 0.016 5.6E-07 33.0 2.6 48 72-123 7-58 (61)
80 1wep_A PHF8; structural genomi 94.2 0.062 2.1E-06 32.1 4.0 51 75-126 11-66 (79)
81 2k16_A Transcription initiatio 94.1 0.0094 3.2E-07 35.3 0.2 54 71-125 13-70 (75)
82 2vpb_A Hpygo1, pygopus homolog 94.0 0.052 1.8E-06 31.4 3.2 35 73-107 5-40 (65)
83 1mm2_A MI2-beta; PHD, zinc fin 94.0 0.014 4.9E-07 33.3 0.8 49 73-125 6-58 (61)
84 2l2t_A Receptor tyrosine-prote 93.6 0.14 4.7E-06 27.2 4.1 29 24-52 12-40 (44)
85 2ks1_B Epidermal growth factor 93.5 0.086 2.9E-06 28.1 3.2 25 27-51 16-40 (44)
86 2kgg_A Histone demethylase jar 93.0 0.11 3.6E-06 28.5 3.2 44 78-121 4-52 (52)
87 3u5n_A E3 ubiquitin-protein li 92.8 0.023 7.9E-07 40.2 0.3 48 74-125 5-56 (207)
88 3o36_A Transcription intermedi 92.6 0.028 9.5E-07 39.0 0.5 46 75-124 3-52 (184)
89 1f62_A Transcription factor WS 92.6 0.07 2.4E-06 29.0 2.1 44 78-122 2-49 (51)
90 2jwa_A Receptor tyrosine-prote 92.4 0.29 9.9E-06 26.0 4.2 25 25-49 14-38 (44)
91 1wee_A PHD finger family prote 92.4 0.019 6.4E-07 33.8 -0.5 51 73-124 13-67 (72)
92 2yql_A PHD finger protein 21A; 92.0 0.014 4.9E-07 32.6 -1.2 46 73-122 6-55 (56)
93 2ysm_A Myeloid/lymphoid or mix 92.0 0.047 1.6E-06 34.7 1.1 38 74-112 5-42 (111)
94 1wew_A DNA-binding family prot 91.3 0.072 2.5E-06 31.8 1.2 50 75-126 15-75 (78)
95 1wem_A Death associated transc 91.3 0.11 3.7E-06 30.7 2.0 48 76-125 16-72 (76)
96 1wen_A Inhibitor of growth fam 90.8 0.17 5.9E-06 29.6 2.5 47 73-124 13-66 (71)
97 2ri7_A Nucleosome-remodeling f 90.6 0.049 1.7E-06 37.3 0.1 49 74-123 6-59 (174)
98 3v43_A Histone acetyltransfera 90.6 0.072 2.5E-06 34.0 0.9 45 78-122 63-111 (112)
99 1xwh_A Autoimmune regulator; P 90.6 0.04 1.4E-06 31.8 -0.4 47 73-123 5-55 (66)
100 3v43_A Histone acetyltransfera 90.5 0.58 2E-05 29.6 5.1 34 75-108 4-42 (112)
101 3m62_A Ubiquitin conjugation f 90.2 0.3 1E-05 42.0 4.5 57 71-133 886-943 (968)
102 2lbm_A Transcriptional regulat 90.0 0.57 2E-05 31.2 4.9 48 72-123 59-117 (142)
103 1weu_A Inhibitor of growth fam 89.9 0.22 7.5E-06 30.7 2.6 47 74-125 34-87 (91)
104 2xb1_A Pygopus homolog 2, B-ce 89.9 0.19 6.6E-06 31.7 2.4 50 76-125 3-63 (105)
105 2puy_A PHD finger protein 21A; 89.9 0.013 4.4E-07 33.3 -2.9 46 75-124 4-53 (60)
106 2yt5_A Metal-response element- 89.5 0.19 6.6E-06 28.7 2.0 51 73-123 3-61 (66)
107 2ku3_A Bromodomain-containing 89.5 0.53 1.8E-05 27.5 3.9 51 73-123 13-66 (71)
108 2lv9_A Histone-lysine N-methyl 88.9 0.14 4.8E-06 31.9 1.2 46 76-123 28-76 (98)
109 2e6s_A E3 ubiquitin-protein li 88.8 0.095 3.2E-06 31.3 0.3 45 77-122 27-76 (77)
110 1fp0_A KAP-1 corepressor; PHD 88.0 0.25 8.5E-06 30.3 1.9 47 73-123 22-72 (88)
111 3o70_A PHD finger protein 13; 88.0 0.085 2.9E-06 30.7 -0.3 46 75-122 18-66 (68)
112 3ql9_A Transcriptional regulat 87.9 1.1 3.9E-05 29.3 5.1 51 69-123 50-111 (129)
113 3c6w_A P28ING5, inhibitor of g 87.1 0.13 4.4E-06 29.0 0.1 44 74-122 7-57 (59)
114 2kwj_A Zinc finger protein DPF 87.0 0.45 1.5E-05 30.3 2.8 34 77-110 2-41 (114)
115 3asl_A E3 ubiquitin-protein li 86.7 0.11 3.8E-06 30.4 -0.3 45 78-123 20-69 (70)
116 4gne_A Histone-lysine N-methyl 86.6 0.52 1.8E-05 29.8 2.9 48 71-124 10-63 (107)
117 2ro1_A Transcription intermedi 86.4 0.15 5.2E-06 35.5 0.3 46 76-125 2-51 (189)
118 2l43_A N-teminal domain from h 86.1 0.65 2.2E-05 28.2 3.0 53 73-125 22-77 (88)
119 1weo_A Cellulose synthase, cat 86.0 2.3 8E-05 25.9 5.4 51 75-125 15-69 (93)
120 2vnf_A ING 4, P29ING4, inhibit 85.9 0.15 5.1E-06 28.8 0.0 44 74-122 8-58 (60)
121 2e6r_A Jumonji/ARID domain-con 84.1 0.12 4E-06 31.9 -1.1 50 73-123 13-66 (92)
122 2k1k_A Ephrin type-A receptor 83.3 3.1 0.00011 21.1 4.7 24 23-46 11-34 (38)
123 2g6q_A Inhibitor of growth pro 82.9 0.26 9E-06 28.0 0.2 46 74-122 9-59 (62)
124 3ask_A E3 ubiquitin-protein li 82.1 0.33 1.1E-05 34.9 0.4 45 78-123 176-225 (226)
125 3shb_A E3 ubiquitin-protein li 81.3 0.18 6.2E-06 30.0 -1.0 44 78-122 28-76 (77)
126 2cs3_A Protein C14ORF4, MY039 79.9 2.6 9E-05 25.2 3.8 49 74-122 13-66 (93)
127 1vfy_A Phosphatidylinositol-3- 78.9 1.4 4.9E-05 25.6 2.5 33 76-108 11-43 (73)
128 1x4k_A Skeletal muscle LIM-pro 77.8 0.88 3E-05 25.8 1.3 39 77-125 6-44 (72)
129 1wyh_A SLIM 2, skeletal muscle 77.1 2.6 8.8E-05 23.8 3.2 40 76-125 5-44 (72)
130 1z2q_A LM5-1; membrane protein 76.8 2.2 7.4E-05 25.5 2.9 36 75-110 20-55 (84)
131 1wfk_A Zinc finger, FYVE domai 76.3 2.2 7.5E-05 25.8 2.8 50 75-124 8-64 (88)
132 1wev_A Riken cDNA 1110020M19; 76.1 1.2 4.2E-05 27.0 1.6 51 75-125 15-74 (88)
133 2k9y_A Ephrin type-A receptor 75.8 3.8 0.00013 20.8 3.3 10 25-34 16-25 (41)
134 2k21_A Potassium voltage-gated 75.8 6.1 0.00021 25.7 4.9 27 22-49 53-79 (138)
135 2yw8_A RUN and FYVE domain-con 75.6 2 6.8E-05 25.5 2.5 35 75-109 18-52 (82)
136 3t7l_A Zinc finger FYVE domain 75.6 1.9 6.4E-05 26.2 2.4 36 75-110 19-54 (90)
137 3i2d_A E3 SUMO-protein ligase 75.6 2.5 8.7E-05 32.5 3.6 46 77-125 250-299 (371)
138 1g47_A Pinch protein; LIM doma 75.4 2.6 9E-05 24.1 3.0 41 75-125 10-50 (77)
139 2d8v_A Zinc finger FYVE domain 74.6 2.3 7.9E-05 24.4 2.4 32 74-110 6-38 (67)
140 1dvp_A HRS, hepatocyte growth 74.1 1.5 5.2E-05 30.9 2.0 35 75-109 160-194 (220)
141 4fo9_A E3 SUMO-protein ligase 73.9 3.1 0.00011 31.9 3.7 46 77-125 216-265 (360)
142 1joc_A EEA1, early endosomal a 73.8 2.1 7.2E-05 27.6 2.4 34 76-109 69-102 (125)
143 1x63_A Skeletal muscle LIM-pro 73.4 3.2 0.00011 24.0 3.0 40 77-126 16-55 (82)
144 3zyq_A Hepatocyte growth facto 73.2 1.6 5.6E-05 31.0 1.9 36 75-110 163-198 (226)
145 2jne_A Hypothetical protein YF 72.7 1.3 4.4E-05 27.5 1.1 42 75-125 31-72 (101)
146 1x4u_A Zinc finger, FYVE domai 72.6 2.7 9.2E-05 25.0 2.6 34 75-108 13-46 (84)
147 1x4l_A Skeletal muscle LIM-pro 72.2 3.2 0.00011 23.4 2.8 40 76-125 5-46 (72)
148 3o7a_A PHD finger protein 13 v 71.6 0.48 1.6E-05 25.7 -0.9 41 81-122 8-51 (52)
149 1y02_A CARP2, FYVE-ring finger 71.2 0.46 1.6E-05 30.7 -1.2 50 75-124 18-67 (120)
150 1x61_A Thyroid receptor intera 71.0 3.5 0.00012 23.2 2.8 39 77-125 6-44 (72)
151 2cu8_A Cysteine-rich protein 2 71.0 2.1 7.1E-05 24.6 1.7 39 76-125 9-47 (76)
152 2co8_A NEDD9 interacting prote 70.5 4.1 0.00014 23.8 3.0 40 75-125 14-53 (82)
153 2dar_A PDZ and LIM domain prot 69.5 6.3 0.00022 23.3 3.8 40 74-125 23-62 (90)
154 1x68_A FHL5 protein; four-and- 69.3 4.2 0.00014 23.3 2.8 39 77-125 6-46 (76)
155 1zfo_A LAsp-1; LIM domain, zin 68.6 1.4 4.8E-05 21.2 0.5 28 77-107 4-31 (31)
156 2dj7_A Actin-binding LIM prote 68.4 4.1 0.00014 23.7 2.7 40 75-125 14-53 (80)
157 2gsm_B Cytochrome C oxidase su 68.4 8.4 0.00029 28.0 4.9 40 11-50 20-59 (262)
158 3a1b_A DNA (cytosine-5)-methyl 68.4 6.6 0.00022 26.5 4.0 46 73-122 76-133 (159)
159 1zbd_B Rabphilin-3A; G protein 68.2 3.2 0.00011 27.2 2.3 35 74-108 53-88 (134)
160 1iml_A CRIP, cysteine rich int 67.8 2.1 7.2E-05 24.6 1.3 42 75-121 26-68 (76)
161 2gmg_A Hypothetical protein PF 67.6 1 3.5E-05 28.4 -0.1 23 97-124 72-94 (105)
162 3f6q_B LIM and senescent cell 67.2 5 0.00017 22.3 2.8 41 75-125 10-50 (72)
163 2l3k_A Rhombotin-2, linker, LI 66.1 3.5 0.00012 26.1 2.2 35 75-111 35-69 (123)
164 2d8y_A Eplin protein; LIM doma 65.2 6.7 0.00023 23.2 3.3 40 75-125 14-53 (91)
165 3mjh_B Early endosome antigen 64.7 0.57 1.9E-05 23.4 -1.4 16 75-90 4-19 (34)
166 1z60_A TFIIH basal transcripti 64.4 3.6 0.00012 23.1 1.7 42 77-120 16-58 (59)
167 2cor_A Pinch protein; LIM doma 63.0 7.6 0.00026 22.4 3.2 39 75-125 14-52 (79)
168 2zet_C Melanophilin; complex, 62.7 5.1 0.00017 26.9 2.5 33 74-107 66-100 (153)
169 2jrp_A Putative cytoplasmic pr 62.5 4.3 0.00015 24.3 1.9 11 78-88 4-14 (81)
170 1x62_A C-terminal LIM domain p 61.3 3.8 0.00013 23.7 1.6 39 75-125 14-52 (79)
171 2pv0_B DNA (cytosine-5)-methyl 60.7 8.3 0.00028 29.8 3.7 47 73-123 90-148 (386)
172 1a7i_A QCRP2 (LIM1); LIM domai 60.7 1.1 3.8E-05 26.2 -1.0 39 76-125 7-45 (81)
173 3kqi_A GRC5, PHD finger protei 60.6 9.5 0.00032 22.0 3.2 46 80-125 13-63 (75)
174 2o35_A Hypothetical protein DU 60.3 3.9 0.00013 25.5 1.5 11 102-112 43-53 (105)
175 3fyb_A Protein of unknown func 60.0 4 0.00014 25.4 1.5 11 102-112 42-52 (104)
176 2jmi_A Protein YNG1, ING1 homo 59.0 3.8 0.00013 25.0 1.3 47 73-122 23-75 (90)
177 2l34_A TYRO protein tyrosine k 57.8 15 0.00053 17.9 3.8 28 21-48 5-32 (33)
178 3mpx_A FYVE, rhogef and PH dom 56.6 2.3 7.9E-05 32.7 0.0 50 75-124 374-430 (434)
179 2cur_A Skeletal muscle LIM-pro 56.4 3.7 0.00013 22.9 0.9 37 77-125 6-42 (69)
180 2ehe_A Four and A half LIM dom 56.0 8.9 0.0003 22.1 2.6 39 77-125 16-54 (82)
181 1x64_A Alpha-actinin-2 associa 55.3 13 0.00046 21.7 3.4 40 74-125 23-62 (89)
182 1nyp_A Pinch protein; LIM doma 55.0 6.8 0.00023 21.5 1.9 38 76-125 5-42 (66)
183 2egq_A FHL1 protein; LIM domai 52.7 10 0.00034 21.5 2.4 39 77-125 16-57 (77)
184 2rgt_A Fusion of LIM/homeobox 51.9 8.1 0.00028 25.8 2.2 9 116-124 95-103 (169)
185 3kv5_D JMJC domain-containing 51.6 11 0.00037 30.0 3.1 49 75-124 36-89 (488)
186 2l8s_A Integrin alpha-1; trans 49.7 30 0.001 18.9 4.9 7 39-45 26-32 (54)
187 2d8z_A Four and A half LIM dom 49.7 8.4 0.00029 21.4 1.7 37 77-125 6-42 (70)
188 1x6a_A LIMK-2, LIM domain kina 49.6 13 0.00044 21.3 2.6 37 77-125 16-52 (81)
189 1x4i_A Inhibitor of growth pro 49.2 18 0.0006 20.7 3.0 47 75-124 5-56 (70)
190 1afo_A Glycophorin A; integral 49.1 25 0.00087 17.8 3.9 18 33-50 21-38 (40)
191 2d8x_A Protein pinch; LIM doma 49.0 12 0.00043 20.7 2.4 38 76-125 5-42 (70)
192 1wig_A KIAA1808 protein; LIM d 48.6 15 0.00051 20.7 2.7 37 77-125 6-42 (73)
193 3kv4_A PHD finger protein 8; e 47.9 3.4 0.00012 32.6 -0.3 47 79-125 7-58 (447)
194 2cup_A Skeletal muscle LIM-pro 47.3 13 0.00045 22.1 2.5 47 75-126 32-78 (101)
195 2rsd_A E3 SUMO-protein ligase 46.7 5.8 0.0002 22.5 0.7 44 77-122 11-64 (68)
196 2l4z_A DNA endonuclease RBBP8, 46.4 7.9 0.00027 24.6 1.3 39 76-125 61-99 (123)
197 3bz1_X Photosystem II PSBX pro 46.1 34 0.0012 18.3 3.9 23 15-37 10-32 (50)
198 1rut_X Flinc4, fusion protein 45.9 11 0.00038 25.6 2.1 37 78-124 71-107 (188)
199 3hb3_B Cytochrome C oxidase su 45.8 35 0.0012 25.3 5.0 8 105-112 266-273 (298)
200 1wd2_A Ariadne-1 protein homol 45.8 3.4 0.00012 23.1 -0.5 36 77-112 7-46 (60)
201 2iyb_E Testin, TESS, TES; LIM 45.8 11 0.00037 20.7 1.7 39 77-125 3-43 (65)
202 2kpi_A Uncharacterized protein 45.0 15 0.00053 20.1 2.2 28 75-102 9-38 (56)
203 2jvx_A NF-kappa-B essential mo 44.8 4 0.00014 19.3 -0.2 11 115-125 4-14 (28)
204 2ku7_A MLL1 PHD3-CYP33 RRM chi 44.7 40 0.0014 20.9 4.6 29 97-125 7-46 (140)
205 2pk7_A Uncharacterized protein 44.4 5.2 0.00018 23.1 0.2 17 109-125 3-19 (69)
206 2lk9_A Bone marrow stromal ant 43.5 30 0.001 17.0 3.2 6 39-44 22-27 (35)
207 2kog_A Vesicle-associated memb 42.8 36 0.0012 21.6 4.1 10 27-36 99-108 (119)
208 2jmo_A Parkin; IBR, E3 ligase, 42.8 1.5 5.2E-05 26.0 -2.4 14 97-110 55-68 (80)
209 2knc_A Integrin alpha-IIB; tra 42.2 42 0.0014 18.3 6.1 10 36-45 26-35 (54)
210 1v6g_A Actin binding LIM prote 42.2 18 0.00062 20.6 2.4 37 77-125 16-52 (81)
211 2jtn_A LIM domain-binding prot 41.3 11 0.00039 25.3 1.6 45 75-125 86-130 (182)
212 2jny_A Uncharacterized BCR; st 41.1 4.8 0.00016 23.1 -0.3 17 109-125 5-21 (67)
213 2cuq_A Four and A half LIM dom 40.9 19 0.00066 20.4 2.4 37 77-125 16-52 (80)
214 1m3v_A FLIN4, fusion of the LI 38.9 29 0.00099 21.6 3.2 50 75-126 31-81 (122)
215 2dlo_A Thyroid receptor-intera 38.2 20 0.00069 20.4 2.2 39 75-125 14-52 (81)
216 2a20_A Regulating synaptic mem 37.3 27 0.00092 19.5 2.4 38 72-110 5-43 (62)
217 1yuz_A Nigerythrin; rubrythrin 36.8 20 0.0007 24.9 2.3 25 92-123 171-195 (202)
218 1x3h_A Leupaxin; paxillin fami 36.6 22 0.00076 20.1 2.2 38 77-126 16-53 (80)
219 1j2o_A FLIN2, fusion of rhombo 36.2 26 0.0009 21.5 2.6 36 75-112 29-65 (114)
220 2xjy_A Rhombotin-2; oncoprotei 35.2 26 0.0009 21.9 2.5 27 78-106 68-94 (131)
221 2lcq_A Putative toxin VAPC6; P 35.1 7.6 0.00026 25.9 -0.1 22 97-124 137-158 (165)
222 2xqn_T Testin, TESS; metal-bin 34.5 25 0.00087 21.8 2.4 25 99-125 50-74 (126)
223 1q55_A EP-cadherin, C-cadherin 32.4 9.5 0.00032 32.5 0.0 24 18-41 700-723 (880)
224 3vhs_A ATPase wrnip1; zinc fin 32.1 9.2 0.00032 17.6 -0.1 9 116-124 8-16 (29)
225 1v54_B Cytochrome C oxidase po 31.1 88 0.003 22.0 4.9 24 1-24 1-24 (227)
226 2jr6_A UPF0434 protein NMA0874 30.4 5.2 0.00018 23.0 -1.4 15 111-125 5-19 (68)
227 1b8t_A Protein (CRP1); LIM dom 29.9 24 0.00083 23.9 1.8 39 76-125 115-153 (192)
228 4ev6_A Magnesium transport pro 29.5 53 0.0018 24.3 3.7 19 18-36 307-325 (339)
229 3pwf_A Rubrerythrin; non heme 29.4 33 0.0011 23.1 2.3 23 94-123 140-162 (170)
230 2kdx_A HYPA, hydrogenase/ureas 29.4 18 0.00063 22.7 1.0 23 97-125 78-101 (119)
231 2yev_B Cytochrome C oxidase su 32.8 14 0.00046 27.8 0.0 8 116-123 246-253 (337)
232 2hf1_A Tetraacyldisaccharide-1 26.5 5.2 0.00018 23.0 -1.8 11 115-125 9-19 (68)
233 2l9u_A Receptor tyrosine-prote 26.4 66 0.0023 15.8 4.7 9 25-33 9-17 (40)
234 2hac_A T-cell surface glycopro 25.9 66 0.0022 15.6 2.9 19 31-49 10-28 (33)
235 2js4_A UPF0434 protein BB2007; 24.7 5.6 0.00019 23.0 -1.9 13 113-125 7-19 (70)
236 4bbq_A Lysine-specific demethy 24.5 17 0.00059 22.5 0.2 45 79-123 62-114 (117)
237 2ct7_A Ring finger protein 31; 23.6 4.3 0.00015 24.2 -2.7 32 79-110 28-61 (86)
238 1oqw_A Fimbrial protein; type 23.2 89 0.0031 19.9 3.6 19 26-44 6-24 (144)
239 2csz_A Synaptotagmin-like prot 22.7 39 0.0013 19.8 1.5 34 73-106 22-56 (76)
240 1lko_A Rubrerythrin all-iron(I 21.9 25 0.00086 24.1 0.6 22 96-123 159-180 (191)
241 4ayb_P DNA-directed RNA polyme 21.7 48 0.0016 17.5 1.5 11 115-125 24-34 (48)
242 1l8d_A DNA double-strand break 21.5 23 0.00079 21.7 0.3 11 115-125 48-58 (112)
243 3sok_A Fimbrial protein; pilus 21.3 1E+02 0.0035 19.9 3.6 20 26-45 6-25 (151)
244 3mkr_B Coatomer subunit alpha; 21.2 1.1E+02 0.0036 23.0 3.9 42 75-122 261-302 (320)
245 2akl_A PHNA-like protein PA012 20.8 28 0.00096 22.7 0.6 28 75-102 26-54 (138)
246 1lv3_A Hypothetical protein YA 20.2 24 0.00082 20.2 0.2 10 116-125 11-20 (68)
247 2fiy_A Protein FDHE homolog; F 20.1 7.4 0.00025 29.1 -2.6 43 75-123 181-231 (309)
No 1
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2.5e-18 Score=104.89 Aligned_cols=54 Identities=39% Similarity=1.136 Sum_probs=48.9
Q ss_pred CCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCCCC
Q 035703 73 TNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPATP 127 (139)
Q Consensus 73 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~~~ 127 (139)
..++..|+||++++..++.++.++ |+|.||.+||..|+..+.+||+||+++.+.
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 346778999999999988888999 999999999999999899999999998764
No 2
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.74 E-value=1.5e-18 Score=99.64 Aligned_cols=52 Identities=42% Similarity=0.999 Sum_probs=46.6
Q ss_pred CCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 74 NDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 74 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
+++.+|+||++++..++.+..++.|||.||.+||.+|++++.+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 3567899999999998888888679999999999999999999999999874
No 3
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=3.9e-18 Score=103.64 Aligned_cols=54 Identities=37% Similarity=0.902 Sum_probs=48.6
Q ss_pred CCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCCCC
Q 035703 73 TNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPATP 127 (139)
Q Consensus 73 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~~~ 127 (139)
...+..|+||++++..++.+..++ |+|.||..||..|+..+.+||+||+++...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 346678999999999988888888 999999999999999888999999998754
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=5.7e-18 Score=101.59 Aligned_cols=55 Identities=36% Similarity=0.869 Sum_probs=48.6
Q ss_pred CCCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCCCC
Q 035703 72 RTNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPATP 127 (139)
Q Consensus 72 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~~~ 127 (139)
....+..|+||++.+..++.+..++ |||.||..||..|+..+.+||+||+++...
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 3446678999999998888888898 999999999999999889999999998754
No 5
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.73 E-value=3e-18 Score=108.38 Aligned_cols=53 Identities=42% Similarity=0.925 Sum_probs=48.5
Q ss_pred CCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCCCC
Q 035703 74 NDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPATP 127 (139)
Q Consensus 74 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~~~ 127 (139)
.++..|+||++++..++.+..++ |||.||..||..|+..+.+||+||+++.++
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 90 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFPPP 90 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSSCC
T ss_pred CCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCCCC
Confidence 46678999999999989898999 999999999999999999999999998765
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.70 E-value=1.4e-17 Score=102.17 Aligned_cols=55 Identities=36% Similarity=0.850 Sum_probs=48.8
Q ss_pred CCCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCCCC
Q 035703 72 RTNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPATP 127 (139)
Q Consensus 72 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~~~ 127 (139)
...++..|+||++.+..++.+..++ |||.||..||..|+..+.+||+||+++...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred cCCCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 3446778999999999888888888 999999999999999889999999998743
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.2e-17 Score=103.50 Aligned_cols=51 Identities=29% Similarity=0.796 Sum_probs=42.0
Q ss_pred CCCccccCcccccC-----------CCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYKP-----------KDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~~-----------~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
+++.|+||++++.+ ++.++.++.|||.||.+||++|+..+.+||+||+++.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 45668888888854 3445556569999999999999999999999999876
No 8
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.66 E-value=5.7e-17 Score=97.51 Aligned_cols=59 Identities=25% Similarity=0.613 Sum_probs=48.0
Q ss_pred CCCCCccccCcccccCC----CceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCCCCCcccCCC
Q 035703 73 TNDYGPCSICLCDYKPK----DSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPATPLAEVVPL 134 (139)
Q Consensus 73 ~~~~~~C~ICl~~~~~~----~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~~~~~~~~~~ 134 (139)
..++..|+||++.+.++ +....++ |||.||.+||..|+..+.+||+||+++... ++.|.
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~--~~~~~ 69 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK--RYHPI 69 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCC--SCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChh--heeec
Confidence 34677899999998753 4456677 999999999999999889999999998743 55554
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.65 E-value=5.5e-17 Score=106.26 Aligned_cols=54 Identities=24% Similarity=0.461 Sum_probs=43.0
Q ss_pred CCCCCccccCcccccCCC---------------ceeecCCCCCcccHHHHHHHH-----hCCCCCcccCCCCCCC
Q 035703 73 TNDYGPCSICLCDYKPKD---------------SVRCIPDCHHCFHADCVDEWL-----RMSATCPLCRSSPATP 127 (139)
Q Consensus 73 ~~~~~~C~ICl~~~~~~~---------------~~~~lp~C~H~fH~~Ci~~wl-----~~~~~CP~CR~~v~~~ 127 (139)
...++.|+||+++|..+. .+..++ |+|.||..||..|+ ..+.+||+||+.+...
T Consensus 22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 345678999999997643 333567 99999999999999 4567899999988643
No 10
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.65 E-value=1.3e-16 Score=91.38 Aligned_cols=50 Identities=32% Similarity=0.780 Sum_probs=42.9
Q ss_pred CCCccccCcccccCCC-ceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYKPKD-SVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~-~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
++..|+||++++.+++ .+..++ |||.||.+||..|+..+.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 5678999999996544 466677 9999999999999998899999999864
No 11
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.63 E-value=1.3e-16 Score=94.01 Aligned_cols=57 Identities=26% Similarity=0.637 Sum_probs=46.6
Q ss_pred CCCccccCcccccCC----CceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCCCCCcccCCC
Q 035703 75 DYGPCSICLCDYKPK----DSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPATPLAEVVPL 134 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~----~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~~~~~~~~~~ 134 (139)
++..|+||++.+.++ +.+..++ |||.||.+|+..|+..+.+||+||+++... ++.|.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~--~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK--RYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTT--CEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCcc--ceeee
Confidence 456899999998753 4456677 999999999999999889999999998754 55443
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=2.5e-16 Score=94.04 Aligned_cols=52 Identities=27% Similarity=0.652 Sum_probs=44.0
Q ss_pred CCCCCccccCcccccCC----CceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 73 TNDYGPCSICLCDYKPK----DSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 73 ~~~~~~C~ICl~~~~~~----~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
..++..|+||++.+.++ ..+..++ |||.||.+||..|+..+.+||+||+++.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 34677899999998763 3346677 9999999999999998899999999875
No 13
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.61 E-value=5.1e-16 Score=100.75 Aligned_cols=50 Identities=28% Similarity=0.597 Sum_probs=42.6
Q ss_pred CCCccccCcccccCCC---------------ceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYKPKD---------------SVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~---------------~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
+++.|+||++.|.... .+..++ |+|.||..||..|+..+.+||+||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 5678999999998541 355677 9999999999999999999999999864
No 14
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=3.2e-15 Score=90.27 Aligned_cols=52 Identities=25% Similarity=0.473 Sum_probs=43.4
Q ss_pred CCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCCCC
Q 035703 73 TNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPATP 127 (139)
Q Consensus 73 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~~~ 127 (139)
..++..|+||++.+.++ +..++ |||.||..||..|+..+..||+||+++...
T Consensus 12 ~~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 12 LTPYILCSICKGYLIDA--TTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CCGGGSCTTTSSCCSSC--EECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred cCCCCCCCCCChHHHCc--CEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 44677899999998862 33346 999999999999998888999999998744
No 15
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=7.1e-16 Score=92.57 Aligned_cols=49 Identities=31% Similarity=0.809 Sum_probs=43.2
Q ss_pred CCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCCCC
Q 035703 74 NDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPATP 127 (139)
Q Consensus 74 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~~~ 127 (139)
.++..|+||++.+.+ ..++ |||.||..||..|+.++..||+||+++...
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 456789999999875 5678 999999999999999889999999998754
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.57 E-value=2.1e-15 Score=89.95 Aligned_cols=49 Identities=35% Similarity=0.823 Sum_probs=42.5
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPAT 126 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~~ 126 (139)
.+..|+||++.+.++ ...++ |||.||..|+..|+..+.+||+||+++..
T Consensus 4 ~~~~C~IC~~~~~~~--~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNY--SMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSC--EEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCC--cEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 456899999998743 46788 99999999999999988999999999874
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.8e-15 Score=91.17 Aligned_cols=49 Identities=29% Similarity=0.586 Sum_probs=42.7
Q ss_pred CCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 73 TNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 73 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
..++..|+||++.+.+ ...++ |||.||..||..|+..+..||+||+++.
T Consensus 12 ~~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 12 SLTVPECAICLQTCVH---PVSLP-CKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SSSCCBCSSSSSBCSS---EEEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCCCCccCCcccCC---CEEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 3466789999999875 45678 9999999999999998899999999987
No 18
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=6.2e-15 Score=91.96 Aligned_cols=55 Identities=20% Similarity=0.571 Sum_probs=45.7
Q ss_pred cCCCCCCccccCcccccCCCc-eeecCCCCCcccHHHHHHHHhCC---CCCcccCCCCCC
Q 035703 71 ARTNDYGPCSICLCDYKPKDS-VRCIPDCHHCFHADCVDEWLRMS---ATCPLCRSSPAT 126 (139)
Q Consensus 71 ~~~~~~~~C~ICl~~~~~~~~-~~~lp~C~H~fH~~Ci~~wl~~~---~~CP~CR~~v~~ 126 (139)
....+...|+||++.+..++. ...++ |||.||..||..|+..+ ..||+||+++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hhccCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 344567789999999987664 66777 99999999999999765 689999998863
No 19
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=4e-15 Score=91.84 Aligned_cols=51 Identities=29% Similarity=0.835 Sum_probs=43.1
Q ss_pred CCCCccccCcccccCCCceeecCCCC-----CcccHHHHHHHHhCC--CCCcccCCCCCC
Q 035703 74 NDYGPCSICLCDYKPKDSVRCIPDCH-----HCFHADCVDEWLRMS--ATCPLCRSSPAT 126 (139)
Q Consensus 74 ~~~~~C~ICl~~~~~~~~~~~lp~C~-----H~fH~~Ci~~wl~~~--~~CP~CR~~v~~ 126 (139)
.+++.|.||+++++.++.+ ++| |+ |.||.+||++|+..+ .+||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 3567899999999877766 588 96 999999999999654 589999999874
No 20
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=2.6e-14 Score=86.22 Aligned_cols=51 Identities=27% Similarity=0.527 Sum_probs=42.2
Q ss_pred CCCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHh---CCCCCcccCCCCCC
Q 035703 72 RTNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLR---MSATCPLCRSSPAT 126 (139)
Q Consensus 72 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~---~~~~CP~CR~~v~~ 126 (139)
...++..|+||++.+.+ ...++ |||.||..||..|+. .+..||+||+++..
T Consensus 16 ~~~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 16 KLQEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCBCTTTCSBCSS---EEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred hCccCCEeccCCcccCC---eEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 34567789999999875 44567 999999999999996 45589999999874
No 21
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.4e-14 Score=89.29 Aligned_cols=49 Identities=22% Similarity=0.499 Sum_probs=42.4
Q ss_pred CCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 73 TNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 73 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
..+...|+||++.+.+ ...++ |||.||..||..|+.....||+||+++.
T Consensus 12 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQN---PVVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCS---EEECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcC---eeEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 3456789999999875 34577 9999999999999998889999999986
No 22
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.51 E-value=1.2e-15 Score=100.42 Aligned_cols=50 Identities=28% Similarity=0.636 Sum_probs=1.2
Q ss_pred CCCccccCcccccCC-------------C--ceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYKPK-------------D--SVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~-------------~--~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
+++.|+||+++|... + .+..++ |+|.||..||++|+..+.+||+||+++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 567899999999752 2 222245 9999999999999999999999999864
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=2.8e-14 Score=84.68 Aligned_cols=50 Identities=24% Similarity=0.456 Sum_probs=41.4
Q ss_pred CCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHH-hCCCCCcccCCCCCC
Q 035703 73 TNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWL-RMSATCPLCRSSPAT 126 (139)
Q Consensus 73 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl-~~~~~CP~CR~~v~~ 126 (139)
..++..|+||++.+.++. .++ |||.||..||..|+ ..+..||+||+++..
T Consensus 12 ~~~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPK---QTE-CGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCCEECTTTCCEESSCC---CCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCcCCCCCCCChHhcCee---ECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 346678999999988643 366 99999999999999 456689999999874
No 24
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.50 E-value=2.4e-14 Score=86.92 Aligned_cols=51 Identities=27% Similarity=0.499 Sum_probs=41.5
Q ss_pred CCCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCC--CCCcccCCCCC
Q 035703 72 RTNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMS--ATCPLCRSSPA 125 (139)
Q Consensus 72 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~--~~CP~CR~~v~ 125 (139)
...++..|+||++.+.++ ..++.|||.||..||..|+..+ ..||+||+++.
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CSCGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred cCCCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 344677899999998863 3465699999999999999755 68999999865
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.48 E-value=1.4e-14 Score=97.94 Aligned_cols=48 Identities=27% Similarity=0.762 Sum_probs=41.9
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPAT 126 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~~ 126 (139)
++..|+||++.+.+ ...++ |||.||..||..|+..+.+||+||+++..
T Consensus 52 ~~~~C~iC~~~~~~---~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIE---AVTLN-CAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSS---EEEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred ccCCCcccCcccCC---ceECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 44579999999875 45678 99999999999999999999999999863
No 26
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=3.8e-14 Score=86.01 Aligned_cols=56 Identities=21% Similarity=0.484 Sum_probs=45.2
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCC--CCCcccCCCCCCCCcccCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMS--ATCPLCRSSPATPLAEVVP 133 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~--~~CP~CR~~v~~~~~~~~~ 133 (139)
..+.|+||.+.+..++... .|+|.||..||..||+.+ .+||+||++......+..|
T Consensus 14 ~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~~~~~ 71 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPKSGP 71 (74)
T ss_dssp SSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCCCCCS
T ss_pred CCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCCCCCC
Confidence 5577999999998765443 499999999999999877 7899999998755555444
No 27
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.48 E-value=7.7e-14 Score=86.19 Aligned_cols=52 Identities=25% Similarity=0.525 Sum_probs=43.1
Q ss_pred cCCCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhC------CCCCcccCCCCCC
Q 035703 71 ARTNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRM------SATCPLCRSSPAT 126 (139)
Q Consensus 71 ~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~------~~~CP~CR~~v~~ 126 (139)
....++..|+||++.+.++ ..++ |||.||..||..|+.. ...||+||+++..
T Consensus 14 ~~~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred HhCccCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 3345677899999998764 3577 9999999999999976 6689999999874
No 28
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.47 E-value=3.8e-14 Score=83.82 Aligned_cols=57 Identities=21% Similarity=0.427 Sum_probs=43.5
Q ss_pred CCCccccCcc-cccCCCce-eecCCCCCcccHHHHHHHHhC-CCCCcccCCCCCCCCcccCCC
Q 035703 75 DYGPCSICLC-DYKPKDSV-RCIPDCHHCFHADCVDEWLRM-SATCPLCRSSPATPLAEVVPL 134 (139)
Q Consensus 75 ~~~~C~ICl~-~~~~~~~~-~~lp~C~H~fH~~Ci~~wl~~-~~~CP~CR~~v~~~~~~~~~~ 134 (139)
++..|+||++ .+.++... ..++ |||.||..||..|+.+ +..||+||+++... ++.|.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~--~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKS--NFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC--CCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCccccc--cceee
Confidence 3567999999 77766543 3466 9999999999999754 45799999998743 55443
No 29
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=9.5e-14 Score=85.78 Aligned_cols=51 Identities=25% Similarity=0.583 Sum_probs=42.7
Q ss_pred CCCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhC------CCCCcccCCCCCC
Q 035703 72 RTNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRM------SATCPLCRSSPAT 126 (139)
Q Consensus 72 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~------~~~CP~CR~~v~~ 126 (139)
...++..|+||++.+.++ ..++ |||.||..|+..|+.. ...||+||+.+..
T Consensus 15 ~~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQP---LSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCCTTTCSCCSSC---BCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred HccCCCCCCCCCcccCCc---eeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 345677899999998763 3467 9999999999999976 6789999999874
No 30
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.46 E-value=6e-14 Score=85.74 Aligned_cols=50 Identities=20% Similarity=0.403 Sum_probs=42.6
Q ss_pred CCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhC-CCCCcccCCCCCC
Q 035703 73 TNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRM-SATCPLCRSSPAT 126 (139)
Q Consensus 73 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~-~~~CP~CR~~v~~ 126 (139)
..++..|+||++.|.+ ...++ |||.||..||..|+.. +.+||+||+++..
T Consensus 5 ~~~~~~C~IC~~~~~~---Pv~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 5 FPEYFRCPISLELMKD---PVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp CSSSSSCTTTSCCCSS---EEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred CcccCCCCCccccccC---CEEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 4567789999999876 34577 9999999999999986 7789999999863
No 31
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.45 E-value=3.9e-14 Score=94.32 Aligned_cols=53 Identities=26% Similarity=0.634 Sum_probs=44.9
Q ss_pred CCCCccccCcccccCC----CceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCCCC
Q 035703 74 NDYGPCSICLCDYKPK----DSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPATP 127 (139)
Q Consensus 74 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~~~ 127 (139)
.++..|+||++.+.++ +.+..++ |||.||.+||.+|+..+.+||+||+.+...
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 3567899999999764 4456777 999999999999999999999999998743
No 32
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=2.5e-13 Score=79.73 Aligned_cols=45 Identities=29% Similarity=0.566 Sum_probs=37.2
Q ss_pred CCCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHh---CCCCCccc
Q 035703 72 RTNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLR---MSATCPLC 120 (139)
Q Consensus 72 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~---~~~~CP~C 120 (139)
...++..|+||++.+.+ ...++ |||.||..||..|++ .+..||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSS---CEECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCC---eEEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34567789999999886 34567 999999999999997 45689998
No 33
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.44 E-value=5.2e-14 Score=90.22 Aligned_cols=48 Identities=27% Similarity=0.650 Sum_probs=41.3
Q ss_pred CCCCccccCcccccCCCceee-cCCCCCcccHHHHHHHHhCC-CCCcccCCCCC
Q 035703 74 NDYGPCSICLCDYKPKDSVRC-IPDCHHCFHADCVDEWLRMS-ATCPLCRSSPA 125 (139)
Q Consensus 74 ~~~~~C~ICl~~~~~~~~~~~-lp~C~H~fH~~Ci~~wl~~~-~~CP~CR~~v~ 125 (139)
.++..|+||++.+.+ .+. ++ |||.||..||..|+..+ ..||+||.++.
T Consensus 20 ~~~~~C~IC~~~~~~---p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 20 AEVFRCFICMEKLRD---ARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HHHTBCTTTCSBCSS---EEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCccCCccccC---ccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 366789999999875 444 77 99999999999999877 69999999986
No 34
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.42 E-value=3.9e-14 Score=86.63 Aligned_cols=50 Identities=22% Similarity=0.496 Sum_probs=41.8
Q ss_pred CCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhC-------CCCCcccCCCCCC
Q 035703 73 TNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRM-------SATCPLCRSSPAT 126 (139)
Q Consensus 73 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~-------~~~CP~CR~~v~~ 126 (139)
..++..|+||++.+.++ ..++ |||.||..||..|+.. ...||+||+++..
T Consensus 9 ~~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 9 VQEEVTCPICLELLTEP---LSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCEETTTTEECSSC---CCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cccCCCCcCCCcccCCe---eECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 34677899999998764 3467 9999999999999976 5689999999874
No 35
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.41 E-value=1.2e-13 Score=88.24 Aligned_cols=48 Identities=25% Similarity=0.650 Sum_probs=41.4
Q ss_pred CCCccccCcccccCCCceeec-CCCCCcccHHHHHHHHhCCCCCcccCCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCI-PDCHHCFHADCVDEWLRMSATCPLCRSSPAT 126 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~l-p~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~~ 126 (139)
++..|+||++.+.+ ...+ + |||.||..||..|+..+..||+||.++..
T Consensus 21 ~~~~C~IC~~~~~~---p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNI---AMIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSS---EEECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCC---cCEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 56789999999886 3344 6 99999999999999988999999999874
No 36
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.41 E-value=8.7e-14 Score=92.32 Aligned_cols=48 Identities=25% Similarity=0.474 Sum_probs=40.8
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCC-CCcccCCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSA-TCPLCRSSPAT 126 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~-~CP~CR~~v~~ 126 (139)
++..|+||++.+.+ ...++ |||.||..||..|+..+. .||+||+++..
T Consensus 51 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFR---PITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcC---cEEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 55679999999885 44577 999999999999997544 89999999875
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.41 E-value=7.3e-14 Score=93.01 Aligned_cols=58 Identities=26% Similarity=0.623 Sum_probs=47.0
Q ss_pred CCCCccccCcccccCC----CceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCCCCCcccCCC
Q 035703 74 NDYGPCSICLCDYKPK----DSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPATPLAEVVPL 134 (139)
Q Consensus 74 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~~~~~~~~~~ 134 (139)
++...|+||++.+.++ .....++ |||.||..||+.|+..+.+||+||+++.+. ++.|.
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~--~~~~~ 131 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK--RYHPI 131 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGG--GEEEE
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChh--cceee
Confidence 4667899999998753 3345677 999999999999999999999999998754 55443
No 38
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.40 E-value=2.4e-13 Score=88.11 Aligned_cols=50 Identities=26% Similarity=0.574 Sum_probs=42.4
Q ss_pred CCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCCC
Q 035703 74 NDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPAT 126 (139)
Q Consensus 74 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~~ 126 (139)
.++..|+||++.+.+ .+..++ |||.||..||..|+..+..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 13 NPHLMCVLCGGYFID--ATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGGTBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CCcCCCccCChHHhC--cCEeCC-CCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 466789999999875 233347 99999999999999988999999999874
No 39
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=3.7e-13 Score=77.49 Aligned_cols=44 Identities=32% Similarity=0.764 Sum_probs=36.1
Q ss_pred CCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHH---hCCCCCccc
Q 035703 73 TNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWL---RMSATCPLC 120 (139)
Q Consensus 73 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl---~~~~~CP~C 120 (139)
..++..|+||++.+.++ ..++ |||.||.+||..|+ ..+..||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34667899999999874 3467 99999999999995 456689998
No 40
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.36 E-value=5.9e-13 Score=83.72 Aligned_cols=51 Identities=27% Similarity=0.499 Sum_probs=41.1
Q ss_pred CCCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCC--CCCcccCCCCC
Q 035703 72 RTNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMS--ATCPLCRSSPA 125 (139)
Q Consensus 72 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~--~~CP~CR~~v~ 125 (139)
...++..|+||++.|.++ ..++.|||.||..||..|+..+ ..||+||+++.
T Consensus 9 ~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 344677899999998863 3465599999999999999643 58999999974
No 41
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.33 E-value=6.2e-13 Score=91.13 Aligned_cols=49 Identities=20% Similarity=0.425 Sum_probs=41.3
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCC-CCcccCCCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSA-TCPLCRSSPATP 127 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~-~CP~CR~~v~~~ 127 (139)
+...|+||++.+.+ ...++ |||.||..||..|+..+. .||+||.++...
T Consensus 77 ~~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ---PVTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcC---CEEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 45679999999876 34577 999999999999998654 899999998754
No 42
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.32 E-value=9.9e-13 Score=91.20 Aligned_cols=49 Identities=35% Similarity=0.630 Sum_probs=40.9
Q ss_pred CCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhC-CCCCcccCCCCC
Q 035703 74 NDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRM-SATCPLCRSSPA 125 (139)
Q Consensus 74 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~-~~~CP~CR~~v~ 125 (139)
.++..|+||++.+.+ .+..++ |||.||..||..|+.. +..||+||.++.
T Consensus 52 ~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 52 HSELMCPICLDMLKN--TMTTKE-CLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHHBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCCcccChHhhC--cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 355689999999886 243347 9999999999999986 778999999985
No 43
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.31 E-value=6.2e-13 Score=78.57 Aligned_cols=48 Identities=25% Similarity=0.490 Sum_probs=40.6
Q ss_pred CCCCccccCcccccCCCceeec--CCCCCc-ccHHHHHHHHhCCCCCcccCCCCC
Q 035703 74 NDYGPCSICLCDYKPKDSVRCI--PDCHHC-FHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 74 ~~~~~C~ICl~~~~~~~~~~~l--p~C~H~-fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
+++..|+||++...+ ...+ | |||. |+.+|+..|...+..||+||+++.
T Consensus 6 ~~~~~C~IC~~~~~~---~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKN---GCIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSC---EEEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCC---EEEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 466789999998664 3344 8 9999 899999999988889999999976
No 44
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.30 E-value=4.5e-12 Score=77.70 Aligned_cols=54 Identities=19% Similarity=0.318 Sum_probs=41.2
Q ss_pred CCCCCccccCcccccCCCce-eecCCCCCcccHHHHHHHHh-CCCCCcccCCCCCCC
Q 035703 73 TNDYGPCSICLCDYKPKDSV-RCIPDCHHCFHADCVDEWLR-MSATCPLCRSSPATP 127 (139)
Q Consensus 73 ~~~~~~C~ICl~~~~~~~~~-~~lp~C~H~fH~~Ci~~wl~-~~~~CP~CR~~v~~~ 127 (139)
..++..|+||++.+...+.. ..++ |||.||..|+..++. ....||.||+++...
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred cccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 34667899999998654322 2245 999999999999974 356899999998743
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.30 E-value=1.5e-12 Score=85.72 Aligned_cols=51 Identities=24% Similarity=0.483 Sum_probs=42.4
Q ss_pred CCCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCC-CCcccCCCCCC
Q 035703 72 RTNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSA-TCPLCRSSPAT 126 (139)
Q Consensus 72 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~-~CP~CR~~v~~ 126 (139)
...++..|+||++.+.++ ..++ |||.||..||..|+..+. .||+||.++..
T Consensus 14 ~~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 14 PLESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CCCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 344667899999998763 4577 999999999999997655 89999999874
No 46
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.30 E-value=1.6e-12 Score=84.40 Aligned_cols=48 Identities=29% Similarity=0.588 Sum_probs=40.0
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCC---CCcccCCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSA---TCPLCRSSPAT 126 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~---~CP~CR~~v~~ 126 (139)
+...|+||++.+.++ ..++ |||.||..||..|+..+. .||+||.++..
T Consensus 20 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 20 KILECPICLELIKEP---VSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HHTSCSSSCCCCSSC---CBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCCcccChhhcCe---EECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 456799999998764 3467 999999999999997653 89999999874
No 47
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.28 E-value=1.6e-12 Score=85.20 Aligned_cols=48 Identities=25% Similarity=0.472 Sum_probs=41.0
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhC-CCCCcccCCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRM-SATCPLCRSSPAT 126 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~-~~~CP~CR~~v~~ 126 (139)
++..|+||++.+.+ ...++ |||.||..||..|+.. +..||+||.++..
T Consensus 22 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHILAD---PVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcHhcC---cEEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 46689999999875 34577 9999999999999976 6789999999874
No 48
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.28 E-value=9.1e-12 Score=79.51 Aligned_cols=56 Identities=16% Similarity=0.073 Sum_probs=46.3
Q ss_pred CCCCCCccccCcccccCCCceeecCCCC-CcccHHHHHHHHhCCCCCcccCCCCCCCCcccCC
Q 035703 72 RTNDYGPCSICLCDYKPKDSVRCIPDCH-HCFHADCVDEWLRMSATCPLCRSSPATPLAEVVP 133 (139)
Q Consensus 72 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~-H~fH~~Ci~~wl~~~~~CP~CR~~v~~~~~~~~~ 133 (139)
...+...|+||++.|.+ .+.++ || |.|+..||..|+..+.+||.||.++... +++|
T Consensus 18 ~~p~~~~CpI~~~~m~d---PV~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~--~L~p 74 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCD---PVVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMD--QIRP 74 (98)
T ss_dssp SCCTTTBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT--TSEE
T ss_pred cCcHhcCCcCccccccC---CeECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChh--hceE
Confidence 34567889999999987 45677 99 9999999999998888999999998743 5544
No 49
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.26 E-value=6e-13 Score=87.09 Aligned_cols=48 Identities=25% Similarity=0.587 Sum_probs=40.5
Q ss_pred CCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhC-CCCCcccCCCCC
Q 035703 74 NDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRM-SATCPLCRSSPA 125 (139)
Q Consensus 74 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~-~~~CP~CR~~v~ 125 (139)
.++..|+||++.+.+ ...++ |||.||..||..|+.. +..||+||+.+.
T Consensus 13 ~~~~~C~iC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 13 LSECQCGICMEILVE---PVTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHHBCTTTCSBCSS---CEECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCccCCcccCc---eeEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 356789999999875 34567 9999999999999966 668999999875
No 50
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.25 E-value=1.2e-11 Score=79.25 Aligned_cols=56 Identities=14% Similarity=0.038 Sum_probs=46.6
Q ss_pred CCCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCCCCCcccCC
Q 035703 72 RTNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPATPLAEVVP 133 (139)
Q Consensus 72 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~~~~~~~~~ 133 (139)
...+...|+||++.|.+ ...++ |||.|+..||..|+..+.+||.||.++... +++|
T Consensus 25 ~~p~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~--~L~p 80 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTD---PVRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTES--MLEP 80 (100)
T ss_dssp SCSTTTBCTTTCSBCSS---EEEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTT--SSEE
T ss_pred cCcHhhCCcCccCcccC---CeECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChh--hceE
Confidence 34467889999999987 45688 999999999999999888999999998742 5544
No 51
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.25 E-value=3.1e-12 Score=75.28 Aligned_cols=50 Identities=22% Similarity=0.448 Sum_probs=40.2
Q ss_pred CCCCccccCcccccCCCceeecCCCCCc-ccHHHHHHHHhCCCCCcccCCCCC
Q 035703 74 NDYGPCSICLCDYKPKDSVRCIPDCHHC-FHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 74 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~-fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
+.+..|.||++...+. .+..+| |||. |+.+|+..|.+.+..||+||+++.
T Consensus 5 ~~~~~C~IC~~~~~~~-~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDG-NIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCE-EEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCe-EEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 3566899999986542 122348 9998 999999999988889999999975
No 52
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.24 E-value=6.1e-12 Score=78.29 Aligned_cols=55 Identities=15% Similarity=0.034 Sum_probs=45.8
Q ss_pred CCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCCCCCcccCC
Q 035703 73 TNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPATPLAEVVP 133 (139)
Q Consensus 73 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~~~~~~~~~ 133 (139)
..+...|+||++.|.+ ...++ |||.|+..||..|+..+.+||.||.++.. .+++|
T Consensus 11 ~p~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~--~~l~p 65 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTD---PVRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTE--SMLEP 65 (85)
T ss_dssp CCTTTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCG--GGCEE
T ss_pred CchheECcccCchhcC---CeECC-CCCEECHHHHHHHHhcCCCCCCCcCCCCh--Hhcch
Confidence 3467889999999987 45688 99999999999999888899999998863 24444
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.24 E-value=2.4e-12 Score=74.01 Aligned_cols=47 Identities=21% Similarity=0.622 Sum_probs=38.9
Q ss_pred CCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCCCC
Q 035703 74 NDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPATP 127 (139)
Q Consensus 74 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~~~ 127 (139)
.+...|+||++.+.++ ..++ |||.||..|+..| ...||+||+++..+
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCe---EEcC-CCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 4566799999999864 4678 9999999999884 56899999998754
No 54
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.23 E-value=6.2e-12 Score=97.60 Aligned_cols=49 Identities=29% Similarity=0.746 Sum_probs=42.0
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHh-CCCCCcccCCCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLR-MSATCPLCRSSPATP 127 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~-~~~~CP~CR~~v~~~ 127 (139)
....|+||++.+.+ ...+| |||.||..|+..|+. .+.+||+||+++...
T Consensus 331 ~~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 331 TFQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 34689999999765 56688 999999999999998 778999999998743
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.18 E-value=7.6e-12 Score=84.87 Aligned_cols=51 Identities=18% Similarity=0.350 Sum_probs=42.2
Q ss_pred cCCCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCC-CCcccCCCCC
Q 035703 71 ARTNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSA-TCPLCRSSPA 125 (139)
Q Consensus 71 ~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~-~CP~CR~~v~ 125 (139)
....+...|+||++.+.++ ..++ |||.||..||..|+..+. .||+||.++.
T Consensus 26 ~~l~~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred ccCCcCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 3445777899999998864 4567 999999999999997654 8999999864
No 56
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=99.17 E-value=4.5e-12 Score=96.51 Aligned_cols=58 Identities=28% Similarity=0.615 Sum_probs=44.1
Q ss_pred CCCCccccCcccccCCCce----eecCCCCCcccHHHHHHHHhCC-----------CCCcccCCCCCCCCccc
Q 035703 74 NDYGPCSICLCDYKPKDSV----RCIPDCHHCFHADCVDEWLRMS-----------ATCPLCRSSPATPLAEV 131 (139)
Q Consensus 74 ~~~~~C~ICl~~~~~~~~~----~~lp~C~H~fH~~Ci~~wl~~~-----------~~CP~CR~~v~~~~~~~ 131 (139)
+...+|+||++.+.++..+ ...+.|||.||..|+.+|+... .+||+||+++..+.+++
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf~~l 378 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSFAAL 378 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGGGGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccHHHH
Confidence 4667899999998873322 2233599999999999999642 36999999998776654
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.15 E-value=9.1e-12 Score=75.48 Aligned_cols=44 Identities=23% Similarity=0.620 Sum_probs=37.8
Q ss_pred CCCccccCcccccCCCceeecCCCCCc-ccHHHHHHHHhCCCCCcccCCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHC-FHADCVDEWLRMSATCPLCRSSPAT 126 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-fH~~Ci~~wl~~~~~CP~CR~~v~~ 126 (139)
++..|+||++.+.+ ...+| |||. ||..|+..| ..||+||+++..
T Consensus 23 ~~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 55689999998765 55678 9999 999999998 789999999764
No 58
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.14 E-value=8.5e-12 Score=81.88 Aligned_cols=45 Identities=27% Similarity=0.717 Sum_probs=38.7
Q ss_pred CCCccccCcccccCCCceeec-CCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCI-PDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~l-p~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
+...|+||++.+.++ ..+ + |||.||..||..|+. ..||+||.++.
T Consensus 21 ~~~~C~IC~~~~~~p---v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILREP---VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSSC---BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhCc---cEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 567899999998763 345 6 999999999999987 78999999985
No 59
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=9.8e-11 Score=69.84 Aligned_cols=51 Identities=24% Similarity=0.544 Sum_probs=40.1
Q ss_pred CCCCCccccCcccccCCCceeecCCCCCc-ccHHHHHHHHhCCCCCcccCCCCCCCCccc
Q 035703 73 TNDYGPCSICLCDYKPKDSVRCIPDCHHC-FHADCVDEWLRMSATCPLCRSSPATPLAEV 131 (139)
Q Consensus 73 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~-fH~~Ci~~wl~~~~~CP~CR~~v~~~~~~~ 131 (139)
..++..|.||++...+ +..+| |||. |+..|+.. ...||+||+++...+...
T Consensus 12 ~~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~~~~i~ 63 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQESFALS 63 (68)
T ss_dssp CCCSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCCEECCC
T ss_pred CCCCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhceEEee
Confidence 3456789999998654 66788 9999 99999984 468999999988654433
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.07 E-value=8.4e-11 Score=81.72 Aligned_cols=51 Identities=24% Similarity=0.475 Sum_probs=42.5
Q ss_pred CCCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCC-CCCcccCCCCCC
Q 035703 72 RTNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMS-ATCPLCRSSPAT 126 (139)
Q Consensus 72 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~-~~CP~CR~~v~~ 126 (139)
...++..|+||++.+.++ ..++ |||.|+..||..|+..+ ..||+||.++..
T Consensus 14 ~~~~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 14 PLESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 445677899999998863 4577 99999999999999654 489999999874
No 61
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.05 E-value=8.2e-11 Score=74.41 Aligned_cols=50 Identities=20% Similarity=0.325 Sum_probs=39.5
Q ss_pred CCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCC------CCCcc--cCCC-CC
Q 035703 73 TNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMS------ATCPL--CRSS-PA 125 (139)
Q Consensus 73 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~------~~CP~--CR~~-v~ 125 (139)
......|+||++.|.+ .+.++.|||.|++.||..|+..+ .+||+ |+.. +.
T Consensus 4 ~~~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~ 62 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR 62 (94)
T ss_dssp CSSCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC
T ss_pred CCcEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC
Confidence 3466789999999986 34453499999999999999653 48999 9866 44
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=4.5e-11 Score=72.51 Aligned_cols=45 Identities=22% Similarity=0.614 Sum_probs=36.8
Q ss_pred CCCccccCcccccCCCceeecCCCCCc-ccHHHHHHHHhCCCCCcccCCCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHC-FHADCVDEWLRMSATCPLCRSSPATP 127 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-fH~~Ci~~wl~~~~~CP~CR~~v~~~ 127 (139)
++..|+||++.+.+ ...+| |||. |+..|+.. ...||+||+++...
T Consensus 24 ~~~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 24 EEKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHHSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCCcCCCCCCC---EEEec-CCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 55679999999765 45678 9999 99999964 36899999998754
No 63
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.02 E-value=1.8e-10 Score=85.19 Aligned_cols=49 Identities=18% Similarity=0.174 Sum_probs=41.5
Q ss_pred CCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhC-CCCCcccCCCCC
Q 035703 73 TNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRM-SATCPLCRSSPA 125 (139)
Q Consensus 73 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~-~~~CP~CR~~v~ 125 (139)
..+...|+||++.|.+ .+.++ |||.|+..||..|+.. +.+||+||.++.
T Consensus 205 ~~~~~~c~i~~~~~~d---Pv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 205 IPDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CCSTTBCTTTCSBCSS---EEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CCcccCCcCcCCHhcC---CeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 3467789999999886 45688 9999999999999975 445999999986
No 64
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.98 E-value=4.4e-10 Score=65.35 Aligned_cols=48 Identities=23% Similarity=0.571 Sum_probs=37.1
Q ss_pred CCCCccccCcccccCCCceeecCCCC--C---cccHHHHHHHHh--CCCCCcccCCCCC
Q 035703 74 NDYGPCSICLCDYKPKDSVRCIPDCH--H---CFHADCVDEWLR--MSATCPLCRSSPA 125 (139)
Q Consensus 74 ~~~~~C~ICl~~~~~~~~~~~lp~C~--H---~fH~~Ci~~wl~--~~~~CP~CR~~v~ 125 (139)
++...|.||+++. ++.+ .+| |. | .||.+|+..|+. .+.+||+||.++.
T Consensus 4 ~~~~~CrIC~~~~--~~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEEC--SCCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCC--CCce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4667899999973 3334 577 65 4 899999999995 3578999998864
No 65
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.97 E-value=9.3e-11 Score=71.92 Aligned_cols=51 Identities=24% Similarity=0.544 Sum_probs=40.3
Q ss_pred CCCccccCcccccCCCceeecCCCCCc-ccHHHHHHHHhCCCCCcccCCCCCCCCcccCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHC-FHADCVDEWLRMSATCPLCRSSPATPLAEVVP 133 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-fH~~Ci~~wl~~~~~CP~CR~~v~~~~~~~~~ 133 (139)
++..|+||++.+.+ ...+| |||. |+..|+..| ..||+||+++........|
T Consensus 17 ~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~~p 68 (79)
T 2yho_A 17 EAMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEHVQHVYLP 68 (79)
T ss_dssp HHTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCEEEECBCT
T ss_pred CCCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhCeEEEEeC
Confidence 45679999998664 66788 9999 999999977 3899999998855443333
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.94 E-value=4e-10 Score=71.06 Aligned_cols=48 Identities=21% Similarity=0.670 Sum_probs=38.8
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhC--------CCCCcc--cCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRM--------SATCPL--CRSS 123 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~--------~~~CP~--CR~~ 123 (139)
+...|+||++++..++.+...+ |||.|+.+|+..++.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4567999999998766555456 9999999999999852 237999 9988
No 67
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.94 E-value=5.9e-10 Score=78.23 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=45.3
Q ss_pred cCCCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhC-CCCCcccCCCCCCCCcccCC
Q 035703 71 ARTNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRM-SATCPLCRSSPATPLAEVVP 133 (139)
Q Consensus 71 ~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~-~~~CP~CR~~v~~~~~~~~~ 133 (139)
....+...|+||++.|.+ .+.++ |||.|+..||..|+.. +.+||.||.++.. .+++|
T Consensus 101 ~~ip~~f~CPI~~elm~D---PV~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~--~~L~p 158 (179)
T 2f42_A 101 REIPDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQ--DQLIP 158 (179)
T ss_dssp CCCCGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG--GGCEE
T ss_pred cCCcHhhcccCccccCCC---CeECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCCh--hhCcc
Confidence 334577889999999986 45677 9999999999999975 3579999998863 25554
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.82 E-value=1.9e-09 Score=62.83 Aligned_cols=55 Identities=11% Similarity=0.190 Sum_probs=45.5
Q ss_pred CccccCcccccCCCceeec-CCCCCcccHHHHHHHHhCCCCCcccCCCCCCCCcccCCCccc
Q 035703 77 GPCSICLCDYKPKDSVRCI-PDCHHCFHADCVDEWLRMSATCPLCRSSPATPLAEVVPLASH 137 (139)
Q Consensus 77 ~~C~ICl~~~~~~~~~~~l-p~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~~~~~~~~~~~~~ 137 (139)
..|+|+++.|+++ ..+ + +||+|.++||.+|+..+.+||+.++++.. .+++|....
T Consensus 4 ~~CpIs~~~m~dP---V~~~~-sG~~yer~~I~~~l~~~~~cP~t~~~L~~--~~Lip~~~~ 59 (61)
T 2bay_A 4 MLCAISGKVPRRP---VLSPK-SRTIFEKSLLEQYVKDTGNDPITNEPLSI--EEIVEIVPS 59 (61)
T ss_dssp CCCTTTCSCCSSE---EEETT-TTEEEEHHHHHHHHHHHSBCTTTCCBCCG--GGCEECCCC
T ss_pred EEecCCCCCCCCC---EEeCC-CCcEEcHHHHHHHHHhCCCCcCCcCCCCh--hhcEECccC
Confidence 5799999999863 455 6 99999999999999888889999999873 477776543
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.73 E-value=3.6e-09 Score=78.01 Aligned_cols=55 Identities=22% Similarity=0.468 Sum_probs=42.4
Q ss_pred CCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCC--CCCcc--cCCCCCCCCcccCC
Q 035703 74 NDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMS--ATCPL--CRSSPATPLAEVVP 133 (139)
Q Consensus 74 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~--~~CP~--CR~~v~~~~~~~~~ 133 (139)
.....|+||++.|.++ ++.+. |||.|++.||..|+..+ ..||+ ||+.+. ..+++|
T Consensus 179 ~~el~CPIcl~~f~DP--Vts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~--~~dL~p 237 (267)
T 3htk_C 179 KIELTCPITCKPYEAP--LISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS--MRDFVR 237 (267)
T ss_dssp BCCSBCTTTSSBCSSE--EEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC--GGGEEE
T ss_pred ceeeECcCccCcccCC--eeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCc--hhhCCc
Confidence 3666799999999863 44346 99999999999999754 47999 999875 334444
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.71 E-value=2.9e-09 Score=81.74 Aligned_cols=44 Identities=27% Similarity=0.697 Sum_probs=37.9
Q ss_pred CCCccccCcccccCCCceeecCCCCCc-ccHHHHHHHHhCCCCCcccCCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHC-FHADCVDEWLRMSATCPLCRSSPAT 126 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-fH~~Ci~~wl~~~~~CP~CR~~v~~ 126 (139)
++..|+||++.+.+ ...+| |||. ||..|+..| ..||+||.++..
T Consensus 294 ~~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 56789999999775 56678 9999 999999988 689999999863
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.46 E-value=1.5e-07 Score=59.39 Aligned_cols=45 Identities=31% Similarity=0.535 Sum_probs=36.9
Q ss_pred ccccCcccccCCCceeecCCCCCcccHHHHHHHHh-CCCCCcccCCCCC
Q 035703 78 PCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLR-MSATCPLCRSSPA 125 (139)
Q Consensus 78 ~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~-~~~~CP~CR~~v~ 125 (139)
.|.+|--++. ...+..| |+|+|+.+|+..|.+ +.++||.|+.++.
T Consensus 3 fC~~C~~Pi~--iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCS--EEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeE--EEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 4788866655 3567788 999999999999984 5678999999987
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.14 E-value=2e-06 Score=62.84 Aligned_cols=48 Identities=25% Similarity=0.518 Sum_probs=38.6
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCC--CCcccCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSA--TCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~--~CP~CR~~v~ 125 (139)
....|.||.+-...+.. -+.|+|.||..|+..|++.+. .||.|+.+..
T Consensus 179 ~i~~C~iC~~iv~~g~~---C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQS---CETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp TCCBCTTTCSBCSSCEE---CSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCCcCcchhhHHhCCcc---cCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 46779999998886532 234999999999999997654 8999999764
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=97.53 E-value=7.1e-05 Score=46.48 Aligned_cols=51 Identities=27% Similarity=0.579 Sum_probs=40.3
Q ss_pred CCCCCccccCcccccCCCceeecCCCC-CcccHHHHHHHHhCCCCCcccCCCCCCCCc
Q 035703 73 TNDYGPCSICLCDYKPKDSVRCIPDCH-HCFHADCVDEWLRMSATCPLCRSSPATPLA 129 (139)
Q Consensus 73 ~~~~~~C~ICl~~~~~~~~~~~lp~C~-H~fH~~Ci~~wl~~~~~CP~CR~~v~~~~~ 129 (139)
...-..|-.|+-+... .+. |+ |.++.+|+...+..+..||+|+.++.+.+.
T Consensus 25 ~~G~~nCKsCWf~~k~--LV~----C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~ 76 (99)
T 2ko5_A 25 HLGPQFCKSCWFENKG--LVE----CNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLR 76 (99)
T ss_dssp CSCCCCCCSSCSCCSS--EEE----CSSCEEEHHHHHHTCSSSSEETTTTEECCCCSC
T ss_pred ccCcccChhhccccCC--eee----ecchhhHHHHHHHHHhhccCCcccCCcCCccee
Confidence 3466679999877442 222 65 999999999999999999999999986654
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=97.11 E-value=0.0006 Score=39.89 Aligned_cols=50 Identities=20% Similarity=0.341 Sum_probs=35.5
Q ss_pred CCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCC----CCcccCCCCCCC
Q 035703 74 NDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSA----TCPLCRSSPATP 127 (139)
Q Consensus 74 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~----~CP~CR~~v~~~ 127 (139)
..+..|.||.+. ++ +..-..|...||..|++..+.... .||.|+....+.
T Consensus 10 ~~~~~C~vC~~~---~~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p~ 63 (66)
T 2lri_C 10 APGARCGVCGDG---TD-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPA 63 (66)
T ss_dssp CTTCCCTTTSCC---TT-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCCCC
T ss_pred CCCCCcCCCCCC---Ce-EEECCCCCCceecccCCCccCcCCCCCEECccccCCCccC
Confidence 355679999753 34 444456999999999988875432 699998765443
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.25 E-value=0.0032 Score=39.30 Aligned_cols=34 Identities=18% Similarity=0.487 Sum_probs=25.3
Q ss_pred CCccccCcccccCCCceeecCCCCCcccHHHHHHH
Q 035703 76 YGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEW 110 (139)
Q Consensus 76 ~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~w 110 (139)
+..|.||++++..+....-+. |+|.|+..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 457999998744333333476 9999999999984
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=96.21 E-value=0.0098 Score=36.15 Aligned_cols=36 Identities=19% Similarity=0.510 Sum_probs=24.7
Q ss_pred CCCCCccccCcccccCCCceeecCCCCCcccHHHHHHH
Q 035703 73 TNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEW 110 (139)
Q Consensus 73 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~w 110 (139)
...|+.|.||-.- ..++....- -|+-+||..|+.+-
T Consensus 12 ~~~D~~C~VC~~~-t~~~l~pCR-vC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCEVW-TAESLFPCR-VCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTCCC-CSSCCSSCS-SSSSCCCHHHHHHH
T ss_pred CCCCcccCccccc-cccceeccc-cccccccHhhcccc
Confidence 3478889999532 233333222 39999999999986
No 77
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=95.76 E-value=0.0027 Score=36.60 Aligned_cols=50 Identities=26% Similarity=0.572 Sum_probs=34.8
Q ss_pred CCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHh-----CCCCCcccCCC
Q 035703 74 NDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLR-----MSATCPLCRSS 123 (139)
Q Consensus 74 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~-----~~~~CP~CR~~ 123 (139)
+++..|+||...+.++...+.-..|...||..|+..-.. ....||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 466679999988764444444445999999999854321 34579999764
No 78
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=95.48 E-value=0.006 Score=42.63 Aligned_cols=50 Identities=22% Similarity=0.437 Sum_probs=35.7
Q ss_pred CCccccCcccccCCCc---eeecCCCCCcccHHHHHH------HHh-----CCCCCcccCCCCC
Q 035703 76 YGPCSICLCDYKPKDS---VRCIPDCHHCFHADCVDE------WLR-----MSATCPLCRSSPA 125 (139)
Q Consensus 76 ~~~C~ICl~~~~~~~~---~~~lp~C~H~fH~~Ci~~------wl~-----~~~~CP~CR~~v~ 125 (139)
+..|+||...+.+++. .+.-..|...||..|..- -+. ....||.|+..-.
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 4569999999887763 445556999999999632 111 2578999987643
No 79
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=95.00 E-value=0.016 Score=33.02 Aligned_cols=48 Identities=21% Similarity=0.575 Sum_probs=33.0
Q ss_pred CCCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhC----CCCCcccCCC
Q 035703 72 RTNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRM----SATCPLCRSS 123 (139)
Q Consensus 72 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~----~~~CP~CR~~ 123 (139)
....+..|.+|.+. ++ +..-..|...||..|+..=+.. .-.||.|+..
T Consensus 7 ~~~~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 7 ETDHQDYCEVCQQG---GE-IILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SSCCCSSCTTTSCC---SS-EEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred cCCCCCCCccCCCC---Cc-EEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 34466789999863 33 4444569899999999875432 2269999753
No 80
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=94.21 E-value=0.062 Score=32.09 Aligned_cols=51 Identities=22% Similarity=0.317 Sum_probs=33.2
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHH-----hCCCCCcccCCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWL-----RMSATCPLCRSSPAT 126 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl-----~~~~~CP~CR~~v~~ 126 (139)
....| ||......+...+.-..|...||..|+.--- .....||.|+..-.+
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~ 66 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGP 66 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccCC
Confidence 34457 8988765334444444599999999984221 134579999887543
No 81
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=94.14 E-value=0.0094 Score=35.33 Aligned_cols=54 Identities=22% Similarity=0.353 Sum_probs=36.3
Q ss_pred cCCCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHh----CCCCCcccCCCCC
Q 035703 71 ARTNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLR----MSATCPLCRSSPA 125 (139)
Q Consensus 71 ~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~----~~~~CP~CR~~v~ 125 (139)
...++...|.||..... ++..+.-..|.-.||..|+..-.. ..-.||.|+..+.
T Consensus 13 ~~~~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 13 EWGNQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp SSSCEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred ccCCCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 33445667999987643 444444556999999999975442 2346999977654
No 82
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=94.04 E-value=0.052 Score=31.37 Aligned_cols=35 Identities=23% Similarity=0.580 Sum_probs=25.3
Q ss_pred CCCCCccccCcccccCCCceeecC-CCCCcccHHHH
Q 035703 73 TNDYGPCSICLCDYKPKDSVRCIP-DCHHCFHADCV 107 (139)
Q Consensus 73 ~~~~~~C~ICl~~~~~~~~~~~lp-~C~H~fH~~Ci 107 (139)
.+....|.+|..++..++..+.-. .|.-.||..|+
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 345667999999987666665555 69999999997
No 83
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=94.02 E-value=0.014 Score=33.27 Aligned_cols=49 Identities=20% Similarity=0.569 Sum_probs=32.5
Q ss_pred CCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhC----CCCCcccCCCCC
Q 035703 73 TNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRM----SATCPLCRSSPA 125 (139)
Q Consensus 73 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~----~~~CP~CR~~v~ 125 (139)
..++..|.+|.+. ++ +..-..|...||..|+..=+.. .-.||.|+....
T Consensus 6 d~~~~~C~vC~~~---g~-ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---GE-LLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp CSSCSSCTTTCCC---SS-CBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred cCCCCcCCCCCCC---CC-EEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence 3456679999753 33 3334458899999999854432 226999976543
No 84
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=93.64 E-value=0.14 Score=27.23 Aligned_cols=29 Identities=7% Similarity=0.063 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 035703 24 YGIAIAVSILVLISTIMLASYACIRVKAN 52 (139)
Q Consensus 24 ~~i~i~l~~~~~i~~~~~~~~~~~r~~~~ 52 (139)
+..+++.++++++++.+.++++.+|++++
T Consensus 12 IA~gVVgGv~~v~ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred EEEeehHHHHHHHHHHHHHHHHhhhhhhh
Confidence 44444444555544444444444444433
No 85
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=93.46 E-value=0.086 Score=28.06 Aligned_cols=25 Identities=12% Similarity=0.127 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q 035703 27 AIAVSILVLISTIMLASYACIRVKA 51 (139)
Q Consensus 27 ~i~l~~~~~i~~~~~~~~~~~r~~~ 51 (139)
+++.+++++++++++++++.+|+++
T Consensus 16 gVVgGv~~~~ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 16 GMVGALLLLLVVALGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ehhHHHHHHHHHHHHHHHHhhhhHh
Confidence 3444444444444444444444433
No 86
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=92.98 E-value=0.11 Score=28.50 Aligned_cols=44 Identities=23% Similarity=0.307 Sum_probs=29.2
Q ss_pred ccccCcccccCCCceeecC-CCCCcccHHHHHHH----HhCCCCCcccC
Q 035703 78 PCSICLCDYKPKDSVRCIP-DCHHCFHADCVDEW----LRMSATCPLCR 121 (139)
Q Consensus 78 ~C~ICl~~~~~~~~~~~lp-~C~H~fH~~Ci~~w----l~~~~~CP~CR 121 (139)
.|.+|...+..++..+.-. .|...||..|+.-- ...+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4778888876555444444 48889999997421 13566899885
No 87
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=92.78 E-value=0.023 Score=40.19 Aligned_cols=48 Identities=23% Similarity=0.503 Sum_probs=33.7
Q ss_pred CCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCC----CCCcccCCCCC
Q 035703 74 NDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMS----ATCPLCRSSPA 125 (139)
Q Consensus 74 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~----~~CP~CR~~v~ 125 (139)
.+++.|.+|.+. + .+..-..|...||..|+.+-+... -.||.|+..-.
T Consensus 5 ~~~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 5 PNEDWCAVCQNG---G-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp SSCSSBTTTCCC---E-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCC---C-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 356679999754 3 344555699999999997755322 26999987543
No 88
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=92.57 E-value=0.028 Score=38.97 Aligned_cols=46 Identities=24% Similarity=0.596 Sum_probs=32.7
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhC----CCCCcccCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRM----SATCPLCRSSP 124 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~----~~~CP~CR~~v 124 (139)
+++.|.+|.+. ++ +..-..|.-.||..|+..-+.. .-.||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 56679999754 44 4444559999999998765543 22699998754
No 89
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=92.56 E-value=0.07 Score=28.98 Aligned_cols=44 Identities=23% Similarity=0.567 Sum_probs=28.9
Q ss_pred ccccCcccccCCCceeecCCCCCcccHHHHHHHHhC----CCCCcccCC
Q 035703 78 PCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRM----SATCPLCRS 122 (139)
Q Consensus 78 ~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~----~~~CP~CR~ 122 (139)
.|.||.+.-..+ .+..-..|...||..|++.=+.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCC-CEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488997653333 34444569999999999753322 225999965
No 90
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=92.36 E-value=0.29 Score=25.96 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 035703 25 GIAIAVSILVLISTIMLASYACIRV 49 (139)
Q Consensus 25 ~i~i~l~~~~~i~~~~~~~~~~~r~ 49 (139)
..+.++++++++.+.+.+.++.+|+
T Consensus 14 Ia~~vVGvll~vi~~l~~~~~~RRR 38 (44)
T 2jwa_A 14 IISAVVGILLVVVLGVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhheehh
Confidence 3344444333333333333333333
No 91
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=92.36 E-value=0.019 Score=33.83 Aligned_cols=51 Identities=16% Similarity=0.208 Sum_probs=33.0
Q ss_pred CCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHH----hCCCCCcccCCCC
Q 035703 73 TNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWL----RMSATCPLCRSSP 124 (139)
Q Consensus 73 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl----~~~~~CP~CR~~v 124 (139)
......| ||......++..+.-..|...||..|+..-- .....||.|+..-
T Consensus 13 ~~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 13 DNWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp CSSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred CCcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 3455568 7987765554344444599999999976421 2344799997653
No 92
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.03 E-value=0.014 Score=32.59 Aligned_cols=46 Identities=26% Similarity=0.626 Sum_probs=30.4
Q ss_pred CCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhC----CCCCcccCC
Q 035703 73 TNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRM----SATCPLCRS 122 (139)
Q Consensus 73 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~----~~~CP~CR~ 122 (139)
..++..|.+|.+. ++.+ .-..|...||..|+..=+.. .-.||.|+.
T Consensus 6 ~~~~~~C~vC~~~---g~ll-~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQLL-MCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---SCCE-ECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---CeEE-EcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 4466789999874 3433 44459999999998854422 125887753
No 93
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=92.01 E-value=0.047 Score=34.67 Aligned_cols=38 Identities=18% Similarity=0.391 Sum_probs=26.2
Q ss_pred CCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHh
Q 035703 74 NDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLR 112 (139)
Q Consensus 74 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~ 112 (139)
.+++.|.||.+.=+..+.+. -..|+..||..|+...+.
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~-C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFF-CTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEE-CSSSCCEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCCcCCeE-CCCCCCCcChHHhCCccc
Confidence 46678999987632222243 345999999999987653
No 94
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=91.27 E-value=0.072 Score=31.77 Aligned_cols=50 Identities=22% Similarity=0.354 Sum_probs=32.0
Q ss_pred CCCccccCcccccCCCceeecC--CCCCcccHHHHHHHH---------hCCCCCcccCCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIP--DCHHCFHADCVDEWL---------RMSATCPLCRSSPAT 126 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp--~C~H~fH~~Ci~~wl---------~~~~~CP~CR~~v~~ 126 (139)
....| ||-.....+..+ .-. .|...||..|+.--- ..+..||.|+..-.+
T Consensus 15 ~~~~C-iC~~~~~~g~MI-~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~~ 75 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMI-QCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGP 75 (78)
T ss_dssp CCCCC-SSCCCCCCSCEE-ECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSC
T ss_pred CCEEe-ECCCcCCCCCEE-EECCccCCccccCEEEccccccccccccCCCCEECCCCCcccCC
Confidence 45568 798874444333 333 599999999985321 134579999876443
No 95
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=91.25 E-value=0.11 Score=30.71 Aligned_cols=48 Identities=27% Similarity=0.494 Sum_probs=31.3
Q ss_pred CCccccCcccccCCCceeecCCCCCcccHHHHHHH---------HhCCCCCcccCCCCC
Q 035703 76 YGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEW---------LRMSATCPLCRSSPA 125 (139)
Q Consensus 76 ~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~w---------l~~~~~CP~CR~~v~ 125 (139)
...| ||......+. .+.-..|...||..|+..- ......||.|+..-.
T Consensus 16 ~~~C-~C~~~~~~~~-MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 16 ALYC-ICRQPHNNRF-MICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp CCCS-TTCCCCCSSC-EEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CCEE-ECCCccCCCC-EEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 4557 8988765333 3334459999999998421 124668999976543
No 96
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=90.75 E-value=0.17 Score=29.62 Aligned_cols=47 Identities=26% Similarity=0.517 Sum_probs=29.7
Q ss_pred CCCCCccccCcccccCCCceeecCC--CC-CcccHHHHHHHHh----CCCCCcccCCCC
Q 035703 73 TNDYGPCSICLCDYKPKDSVRCIPD--CH-HCFHADCVDEWLR----MSATCPLCRSSP 124 (139)
Q Consensus 73 ~~~~~~C~ICl~~~~~~~~~~~lp~--C~-H~fH~~Ci~~wl~----~~~~CP~CR~~v 124 (139)
.++...| ||.+... ++ .+.-.+ |. ..||..|+. +. .+-.||.|+..-
T Consensus 13 ~~~~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 13 PNEPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TTSCCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCCCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 3456678 8987532 33 333344 55 689999997 32 233699997754
No 97
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=90.65 E-value=0.049 Score=37.28 Aligned_cols=49 Identities=22% Similarity=0.442 Sum_probs=32.5
Q ss_pred CCCCccccCcccccCCCceeecCCCCCcccHHHHHHHH-----hCCCCCcccCCC
Q 035703 74 NDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWL-----RMSATCPLCRSS 123 (139)
Q Consensus 74 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl-----~~~~~CP~CR~~ 123 (139)
++...| +|......+...+.-..|..+||..|+..-- .....||.|+..
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 355679 9988765444444455699999999984211 234579999763
No 98
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=90.64 E-value=0.072 Score=33.97 Aligned_cols=45 Identities=31% Similarity=0.617 Sum_probs=29.9
Q ss_pred ccccCcccccCCCceeecCCCCCcccHHHHHHHHhC----CCCCcccCC
Q 035703 78 PCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRM----SATCPLCRS 122 (139)
Q Consensus 78 ~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~----~~~CP~CR~ 122 (139)
.|.||.+.-.+++.+..-..|...||..|++.-+.. .-.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 588887643333445455569999999998764432 226999975
No 99
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=90.55 E-value=0.04 Score=31.81 Aligned_cols=47 Identities=23% Similarity=0.629 Sum_probs=31.9
Q ss_pred CCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhC----CCCCcccCCC
Q 035703 73 TNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRM----SATCPLCRSS 123 (139)
Q Consensus 73 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~----~~~CP~CR~~ 123 (139)
..++..|.||.+. ++ +..-..|.-.||..|+..=+.. .-.||.|...
T Consensus 5 ~~~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 5 QKNEDECAVCRDG---GE-LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CSCCCSBSSSSCC---SS-CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCCccCCCC---CC-EEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 3467789999864 34 3344459999999999854322 2259999654
No 100
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=90.46 E-value=0.58 Score=29.64 Aligned_cols=34 Identities=26% Similarity=0.546 Sum_probs=23.8
Q ss_pred CCCccccCcccc-----cCCCceeecCCCCCcccHHHHH
Q 035703 75 DYGPCSICLCDY-----KPKDSVRCIPDCHHCFHADCVD 108 (139)
Q Consensus 75 ~~~~C~ICl~~~-----~~~~~~~~lp~C~H~fH~~Ci~ 108 (139)
....|.+|+..- ..++++..-..|+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 456799998753 1234455555699999999995
No 101
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=90.24 E-value=0.3 Score=42.04 Aligned_cols=57 Identities=16% Similarity=0.114 Sum_probs=45.5
Q ss_pred cCCCCCCccccCcccccCCCceeecCCCC-CcccHHHHHHHHhCCCCCcccCCCCCCCCcccCC
Q 035703 71 ARTNDYGPCSICLCDYKPKDSVRCIPDCH-HCFHADCVDEWLRMSATCPLCRSSPATPLAEVVP 133 (139)
Q Consensus 71 ~~~~~~~~C~ICl~~~~~~~~~~~lp~C~-H~fH~~Ci~~wl~~~~~CP~CR~~v~~~~~~~~~ 133 (139)
.+.++...|+|-++-|.+ .+.+| -| +.|-+..|..|+..+.+||.=|.++... +++|
T Consensus 886 ~~iP~~F~cPIs~~lM~D---PVilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~--~liP 943 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKD---PVILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE--DVTP 943 (968)
T ss_dssp CCSCGGGBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG--GCEE
T ss_pred cCCcHHhCCcchhhHHhC---CeEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCcc--cccc
Confidence 334577789999999887 45677 76 6899999999999889999999988732 5555
No 102
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=89.99 E-value=0.57 Score=31.20 Aligned_cols=48 Identities=21% Similarity=0.472 Sum_probs=33.1
Q ss_pred CCCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHh-----------CCCCCcccCCC
Q 035703 72 RTNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLR-----------MSATCPLCRSS 123 (139)
Q Consensus 72 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~-----------~~~~CP~CR~~ 123 (139)
+...++.|.+|-+. ++ +..-..|-.+||..||..=+. ..=.||.|+..
T Consensus 59 ~Dg~~d~C~vC~~G---G~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 59 SDGMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TTSCBCSCSSSCCC---SS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCCeecccCCC---Cc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 34466789999765 44 434445889999999996542 12269999753
No 103
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=89.94 E-value=0.22 Score=30.69 Aligned_cols=47 Identities=26% Similarity=0.520 Sum_probs=29.5
Q ss_pred CCCCccccCcccccCCCceeecCC--CC-CcccHHHHHHHHh----CCCCCcccCCCCC
Q 035703 74 NDYGPCSICLCDYKPKDSVRCIPD--CH-HCFHADCVDEWLR----MSATCPLCRSSPA 125 (139)
Q Consensus 74 ~~~~~C~ICl~~~~~~~~~~~lp~--C~-H~fH~~Ci~~wl~----~~~~CP~CR~~v~ 125 (139)
++...| ||.+... ++ .+.-.+ |. ..||..|+. +. .+-.||.|+..-.
T Consensus 34 ~e~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 34 NEPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCCBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCCcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 355668 9987642 33 333334 55 689999987 32 2337999987543
No 104
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=89.92 E-value=0.19 Score=31.67 Aligned_cols=50 Identities=22% Similarity=0.530 Sum_probs=34.1
Q ss_pred CCccccCcccccCCCceeecC-CCCCcccHHHHHHH------H----hCCCCCcccCCCCC
Q 035703 76 YGPCSICLCDYKPKDSVRCIP-DCHHCFHADCVDEW------L----RMSATCPLCRSSPA 125 (139)
Q Consensus 76 ~~~C~ICl~~~~~~~~~~~lp-~C~H~fH~~Ci~~w------l----~~~~~CP~CR~~v~ 125 (139)
...|.||...+..+...+.-. .|...||..|+.-= + ..+..||.|+..-.
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 456999999886554444443 58999999997321 1 13447999987654
No 105
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=89.89 E-value=0.013 Score=33.26 Aligned_cols=46 Identities=26% Similarity=0.597 Sum_probs=31.0
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhC----CCCCcccCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRM----SATCPLCRSSP 124 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~----~~~CP~CR~~v 124 (139)
++..|.+|.+. ++.+ .-..|.-.||..|+..=+.. .-.||.|+...
T Consensus 4 ~~~~C~vC~~~---g~ll-~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLL-MCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCC---SSCE-ECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCC---CcEE-EcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 56679999874 3433 44469999999999854422 22588886543
No 106
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=89.51 E-value=0.19 Score=28.67 Aligned_cols=51 Identities=20% Similarity=0.498 Sum_probs=33.6
Q ss_pred CCCCCccccCccccc-CCCceeecCCCCCcccHHHHHHHHh-------CCCCCcccCCC
Q 035703 73 TNDYGPCSICLCDYK-PKDSVRCIPDCHHCFHADCVDEWLR-------MSATCPLCRSS 123 (139)
Q Consensus 73 ~~~~~~C~ICl~~~~-~~~~~~~lp~C~H~fH~~Ci~~wl~-------~~~~CP~CR~~ 123 (139)
..++..|.||..... .+..+..-..|+-.||..|+..=+. ..-.||.|+..
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 346678999987643 2334445556999999999875321 22368888654
No 107
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=89.46 E-value=0.53 Score=27.49 Aligned_cols=51 Identities=20% Similarity=0.373 Sum_probs=33.3
Q ss_pred CCCCCccccCcccc-cCCCceeecCCCCCcccHHHHHHHHh--CCCCCcccCCC
Q 035703 73 TNDYGPCSICLCDY-KPKDSVRCIPDCHHCFHADCVDEWLR--MSATCPLCRSS 123 (139)
Q Consensus 73 ~~~~~~C~ICl~~~-~~~~~~~~lp~C~H~fH~~Ci~~wl~--~~~~CP~CR~~ 123 (139)
..++..|.||.+.- .+++.+..-..|.-.||..|+..-.. ..=.||.|+..
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 44677899998653 23345555566999999999874321 12258888654
No 108
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=88.92 E-value=0.14 Score=31.89 Aligned_cols=46 Identities=22% Similarity=0.447 Sum_probs=30.0
Q ss_pred CCccccCcccccCCCceeecCCCCCcccHHHHHHHHh---CCCCCcccCCC
Q 035703 76 YGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLR---MSATCPLCRSS 123 (139)
Q Consensus 76 ~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~---~~~~CP~CR~~ 123 (139)
...| ||-.....+..+ .-..|.-.||..|+..=.. ....||.|+..
T Consensus 28 ~vrC-iC~~~~~~~~mi-~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMI-CCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp BCCC-TTSCCSCSSCEE-EBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred CEEe-ECCCccCCCcEE-EcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 3457 887765554443 4445999999999864221 23479999743
No 109
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.78 E-value=0.095 Score=31.28 Aligned_cols=45 Identities=22% Similarity=0.577 Sum_probs=29.3
Q ss_pred CccccCcccccCCCceeecCCCCCcccHHHHHHHHhC-----CCCCcccCC
Q 035703 77 GPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRM-----SATCPLCRS 122 (139)
Q Consensus 77 ~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~-----~~~CP~CR~ 122 (139)
..|.||...-.. +.+..-..|...||..|+..=+.. .=.||.|+.
T Consensus 27 c~C~vC~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEP-NMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCS-TTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCC-CCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 368899864333 344445569999999999843321 226888864
No 110
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=88.02 E-value=0.25 Score=30.25 Aligned_cols=47 Identities=28% Similarity=0.608 Sum_probs=32.5
Q ss_pred CCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhC----CCCCcccCCC
Q 035703 73 TNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRM----SATCPLCRSS 123 (139)
Q Consensus 73 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~----~~~CP~CR~~ 123 (139)
..+++.|.+|.+. ++ +..-..|.-.||..|+.+=+.. .-.||.|+..
T Consensus 22 d~n~~~C~vC~~~---g~-LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSS---SC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCC---CC-EEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3466689999864 44 3344458899999999765432 2269999764
No 111
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=88.02 E-value=0.085 Score=30.69 Aligned_cols=46 Identities=20% Similarity=0.499 Sum_probs=29.8
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHH---hCCCCCcccCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWL---RMSATCPLCRS 122 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl---~~~~~CP~CR~ 122 (139)
+...| ||..... ++..+.-..|...||..|+..-- .....||.|+.
T Consensus 18 ~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 55568 9987655 34344444599999999985321 13346888864
No 112
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=87.86 E-value=1.1 Score=29.25 Aligned_cols=51 Identities=20% Similarity=0.451 Sum_probs=33.5
Q ss_pred cccCCCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHH------h-----CCCCCcccCCC
Q 035703 69 ENARTNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWL------R-----MSATCPLCRSS 123 (139)
Q Consensus 69 ~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl------~-----~~~~CP~CR~~ 123 (139)
...+...++.|.||-+. ++ +..-..|-..||.+||..=+ + ..=.|+.|+..
T Consensus 50 ~~d~Dg~~~~C~vC~dG---G~-LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 50 SRDSDGMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp CBCTTSCBSSCTTTCCC---SE-EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred ccCCCCCCCcCeecCCC---Ce-eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 33444466779999764 33 43444588999999998642 1 11279999654
No 113
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=87.08 E-value=0.13 Score=29.04 Aligned_cols=44 Identities=30% Similarity=0.557 Sum_probs=27.3
Q ss_pred CCCCccccCcccccCCCceeecCC--CC-CcccHHHHHHHHhC----CCCCcccCC
Q 035703 74 NDYGPCSICLCDYKPKDSVRCIPD--CH-HCFHADCVDEWLRM----SATCPLCRS 122 (139)
Q Consensus 74 ~~~~~C~ICl~~~~~~~~~~~lp~--C~-H~fH~~Ci~~wl~~----~~~CP~CR~ 122 (139)
++...| ||.+.. .+ ..+.-.+ |. ..||..|+. +.. +-.||.|++
T Consensus 7 ~e~~yC-~C~~~~-~g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVS-YG-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCC-CC-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 355567 898753 23 3444445 55 699999997 322 336998864
No 114
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=87.00 E-value=0.45 Score=30.29 Aligned_cols=34 Identities=21% Similarity=0.459 Sum_probs=23.2
Q ss_pred CccccCccccc------CCCceeecCCCCCcccHHHHHHH
Q 035703 77 GPCSICLCDYK------PKDSVRCIPDCHHCFHADCVDEW 110 (139)
Q Consensus 77 ~~C~ICl~~~~------~~~~~~~lp~C~H~fH~~Ci~~w 110 (139)
+.|.||++.-. .++.++.-..|+..||..|+...
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 46999987541 12344444469999999998754
No 115
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=86.66 E-value=0.11 Score=30.35 Aligned_cols=45 Identities=29% Similarity=0.611 Sum_probs=28.1
Q ss_pred ccccCcccccCCCceeecCCCCCcccHHHHHHHHhC-----CCCCcccCCC
Q 035703 78 PCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRM-----SATCPLCRSS 123 (139)
Q Consensus 78 ~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~-----~~~CP~CR~~ 123 (139)
.|.||...-. ++.+..-..|...||..|+..=+.. .=.||.|+.+
T Consensus 20 ~C~~C~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCC-CCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 4667765422 2344445569999999999843321 2268888653
No 116
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=86.64 E-value=0.52 Score=29.84 Aligned_cols=48 Identities=19% Similarity=0.423 Sum_probs=30.2
Q ss_pred cCCCCCCccccCcccccCCCceeecC--CCCCcccHHHHHHHHhCC----CCCcccCCCC
Q 035703 71 ARTNDYGPCSICLCDYKPKDSVRCIP--DCHHCFHADCVDEWLRMS----ATCPLCRSSP 124 (139)
Q Consensus 71 ~~~~~~~~C~ICl~~~~~~~~~~~lp--~C~H~fH~~Ci~~wl~~~----~~CP~CR~~v 124 (139)
.+..+++.|.+|.+. ++ +..-. .|...||..|+. +... -.||.|+..+
T Consensus 10 ~~~~~~~~C~~C~~~---G~-ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~ 63 (107)
T 4gne_A 10 PKQMHEDYCFQCGDG---GE-LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDE 63 (107)
T ss_dssp CCCSSCSSCTTTCCC---SE-EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTT
T ss_pred CcCCCCCCCCcCCCC---Cc-EeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCc
Confidence 334567789999842 33 43333 488999999997 4322 2588765444
No 117
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=86.36 E-value=0.15 Score=35.49 Aligned_cols=46 Identities=33% Similarity=0.665 Sum_probs=31.1
Q ss_pred CCccccCcccccCCCceeecCCCCCcccHHHHHHHHhC----CCCCcccCCCCC
Q 035703 76 YGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRM----SATCPLCRSSPA 125 (139)
Q Consensus 76 ~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~----~~~CP~CR~~v~ 125 (139)
++.|.+|.+. ++.+ ....|...||..|+..=+.. .-.||.|+....
T Consensus 2 ~~~C~~C~~~---g~ll-~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~~ 51 (189)
T 2ro1_A 2 ATICRVCQKP---GDLV-MCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 51 (189)
T ss_dssp CCCBTTTCCC---SSCC-CCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSCC
T ss_pred CCcCccCCCC---Ccee-ECCCCCchhccccCCCCcccCCCCCCCCcCccCCCC
Confidence 4679999854 4433 34458899999999754422 226999987643
No 118
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=86.13 E-value=0.65 Score=28.22 Aligned_cols=53 Identities=21% Similarity=0.369 Sum_probs=34.7
Q ss_pred CCCCCccccCcccc-cCCCceeecCCCCCcccHHHHHHHHh--CCCCCcccCCCCC
Q 035703 73 TNDYGPCSICLCDY-KPKDSVRCIPDCHHCFHADCVDEWLR--MSATCPLCRSSPA 125 (139)
Q Consensus 73 ~~~~~~C~ICl~~~-~~~~~~~~lp~C~H~fH~~Ci~~wl~--~~~~CP~CR~~v~ 125 (139)
..++..|.||.+.- ..++.+..-..|.-.||..|+..-.. ..-.||.|.....
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 34677899998753 22334555556989999999975321 1226999976544
No 119
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=86.03 E-value=2.3 Score=25.93 Aligned_cols=51 Identities=20% Similarity=0.310 Sum_probs=35.4
Q ss_pred CCCccccCcccccC---CCceeecCCCCCcccHHHHHHHH-hCCCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYKP---KDSVRCIPDCHHCFHADCVDEWL-RMSATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~~---~~~~~~lp~C~H~fH~~Ci~~wl-~~~~~CP~CR~~v~ 125 (139)
....|.||-+++.. ++.-..-..|+--.++.|++-=. +.++.||-|+.+..
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 55689999998653 33222222477778999987655 45678999998874
No 120
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=85.93 E-value=0.15 Score=28.81 Aligned_cols=44 Identities=27% Similarity=0.542 Sum_probs=26.7
Q ss_pred CCCCccccCcccccCCCceeecCC--CC-CcccHHHHHHHHhC----CCCCcccCC
Q 035703 74 NDYGPCSICLCDYKPKDSVRCIPD--CH-HCFHADCVDEWLRM----SATCPLCRS 122 (139)
Q Consensus 74 ~~~~~C~ICl~~~~~~~~~~~lp~--C~-H~fH~~Ci~~wl~~----~~~CP~CR~ 122 (139)
++...| ||...- .+ ..+.-.+ |. ..||..|+. +.. +-.||.|++
T Consensus 8 ~e~~~C-~C~~~~-~g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 8 NEPTYC-LCHQVS-YG-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp -CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCEE-ECCCcC-CC-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 345567 898753 23 3444444 44 689999997 322 236888864
No 121
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.12 E-value=0.12 Score=31.91 Aligned_cols=50 Identities=22% Similarity=0.359 Sum_probs=32.9
Q ss_pred CCCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhC----CCCCcccCCC
Q 035703 73 TNDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRM----SATCPLCRSS 123 (139)
Q Consensus 73 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~----~~~CP~CR~~ 123 (139)
..++..|.||...-.. +.+..-..|...||..|+..=+.. .-.||.|+..
T Consensus 13 ~~~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 13 FIDSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred ccCCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 3356679999876432 334445569999999999743322 2259999753
No 122
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=83.33 E-value=3.1 Score=21.12 Aligned_cols=24 Identities=13% Similarity=0.052 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 035703 23 GYGIAIAVSILVLISTIMLASYAC 46 (139)
Q Consensus 23 ~~~i~i~l~~~~~i~~~~~~~~~~ 46 (139)
+-..+++++.++.+.++..+.++.
T Consensus 11 GaIAGiVvG~v~gv~li~~l~~~~ 34 (38)
T 2k1k_A 11 GEIVAVIFGLLLGAALLLGILVFR 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeeeehHHHHHHHHHHHHHHHH
Confidence 334555555554443333333333
No 123
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=82.87 E-value=0.26 Score=28.00 Aligned_cols=46 Identities=26% Similarity=0.478 Sum_probs=27.2
Q ss_pred CCCCccccCcccccCCCceeecCC--CC-CcccHHHHHHHH--hCCCCCcccCC
Q 035703 74 NDYGPCSICLCDYKPKDSVRCIPD--CH-HCFHADCVDEWL--RMSATCPLCRS 122 (139)
Q Consensus 74 ~~~~~C~ICl~~~~~~~~~~~lp~--C~-H~fH~~Ci~~wl--~~~~~CP~CR~ 122 (139)
++...| ||.+.. .+ ..+.-.+ |. ..||..|+..=- ..+-.||.|+.
T Consensus 9 ~e~~yC-~C~~~~-~g-~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 9 NEPTYC-LCNQVS-YG-EMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp -CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CCCcEE-ECCCCC-CC-CeeeeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 355667 898752 23 3444445 44 799999987210 12336998865
No 124
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=82.07 E-value=0.33 Score=34.86 Aligned_cols=45 Identities=31% Similarity=0.672 Sum_probs=25.7
Q ss_pred ccccCcccccCCCceeecCCCCCcccHHHHHHHHhC-----CCCCcccCCC
Q 035703 78 PCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRM-----SATCPLCRSS 123 (139)
Q Consensus 78 ~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~-----~~~CP~CR~~ 123 (139)
.|.+|...-.. +.+..-..|...||..|+.+=+.. .=.||.|+.+
T Consensus 176 ~C~vC~~~~~~-~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 176 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCcCCCCCCCC-CCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 58888764323 334445569999999999854321 2269999753
No 125
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=81.35 E-value=0.18 Score=30.04 Aligned_cols=44 Identities=30% Similarity=0.624 Sum_probs=27.5
Q ss_pred ccccCcccccCCCceeecCCCCCcccHHHHHHHHhC----C-CCCcccCC
Q 035703 78 PCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRM----S-ATCPLCRS 122 (139)
Q Consensus 78 ~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~----~-~~CP~CR~ 122 (139)
.|.||...-. ++.+..-..|...||..|+..-|.. . =.||.|+.
T Consensus 28 ~C~vC~~~~d-~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCC-CcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 4666655432 2344444568999999999865432 1 36898875
No 126
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=79.86 E-value=2.6 Score=25.25 Aligned_cols=49 Identities=22% Similarity=0.375 Sum_probs=33.9
Q ss_pred CCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCC-----CCCcccCC
Q 035703 74 NDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMS-----ATCPLCRS 122 (139)
Q Consensus 74 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~-----~~CP~CR~ 122 (139)
.....|.+|.|.+++..-+..-..=+|.|+-.|-+..++++ -.||.=.+
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG~k 66 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEK 66 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTSSC
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCCCc
Confidence 35567999999999866554222335999999999888542 24766544
No 127
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=78.93 E-value=1.4 Score=25.58 Aligned_cols=33 Identities=15% Similarity=0.342 Sum_probs=22.7
Q ss_pred CCccccCcccccCCCceeecCCCCCcccHHHHH
Q 035703 76 YGPCSICLCDYKPKDSVRCIPDCHHCFHADCVD 108 (139)
Q Consensus 76 ~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~ 108 (139)
+..|.+|...|..-..--.-..||++|+.+|-.
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 457999999887432111223599999999954
No 128
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=77.79 E-value=0.88 Score=25.83 Aligned_cols=39 Identities=18% Similarity=0.407 Sum_probs=26.5
Q ss_pred CccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 77 GPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 77 ~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
..|..|-+.+..++.+... -+..||.+|+ .|-.|++++.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY--KGSSWHETCF--------ICHRCQQPIG 44 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE--TTEEEETTTT--------CCSSSCCCCC
T ss_pred CCCccCCCcccCCceEEEE--CcCeecccCC--------cccccCCccC
Confidence 4688888888765444322 5677888774 4788877765
No 129
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=77.12 E-value=2.6 Score=23.76 Aligned_cols=40 Identities=20% Similarity=0.370 Sum_probs=27.6
Q ss_pred CCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 76 YGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 76 ~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
...|.-|-+.+..++.+. .. -+..||.+|+ .|-.|++++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~-~a-~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKL-EY-GGQTWHEHCF--------LCSGCEQPLG 44 (72)
T ss_dssp CCBCSSSCCBCCSSSCEE-CS-TTCCEETTTC--------BCTTTCCBTT
T ss_pred CCCCccCCCccccCccEE-EE-CccccCcccC--------eECCCCCcCC
Confidence 346888988887644432 22 6778898874 4888888775
No 130
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=76.76 E-value=2.2 Score=25.50 Aligned_cols=36 Identities=19% Similarity=0.440 Sum_probs=24.5
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHH
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEW 110 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~w 110 (139)
+...|.+|...|..-..--.-..||++|+.+|-...
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 445799999998753222223359999999996543
No 131
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=76.30 E-value=2.2 Score=25.81 Aligned_cols=50 Identities=14% Similarity=0.296 Sum_probs=31.3
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHH-------hCCCCCcccCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWL-------RMSATCPLCRSSP 124 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl-------~~~~~CP~CR~~v 124 (139)
+...|.+|...|..-..--.-..||++|+..|..... ...+.|-.|...+
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l 64 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTIL 64 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHH
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHH
Confidence 4557999999887532222233599999999965432 1223577775544
No 132
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=76.11 E-value=1.2 Score=26.95 Aligned_cols=51 Identities=18% Similarity=0.382 Sum_probs=34.8
Q ss_pred CCCccccCcccccC-CCceeecCCCCCcccHHHHHHHHh--------CCCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYKP-KDSVRCIPDCHHCFHADCVDEWLR--------MSATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~~-~~~~~~lp~C~H~fH~~Ci~~wl~--------~~~~CP~CR~~v~ 125 (139)
.+..|.+|...-.. ++.+..-..|...||..|+..=+. ..-.|+.|+....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 46679999876332 234555566999999999976543 1226999976544
No 133
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=75.78 E-value=3.8 Score=20.80 Aligned_cols=10 Identities=20% Similarity=0.252 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 035703 25 GIAIAVSILV 34 (139)
Q Consensus 25 ~i~i~l~~~~ 34 (139)
..+.+.++++
T Consensus 16 ~~~vv~Gv~l 25 (41)
T 2k9y_A 16 IGGVAVGVVL 25 (41)
T ss_dssp HHHHHHHHHH
T ss_pred EeehhHHHHH
Confidence 3444444444
No 134
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=75.77 E-value=6.1 Score=25.71 Aligned_cols=27 Identities=11% Similarity=0.187 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 035703 22 LGYGIAIAVSILVLISTIMLASYACIRV 49 (139)
Q Consensus 22 ~~~~i~i~l~~~~~i~~~~~~~~~~~r~ 49 (139)
+.|.+.+ ++|..++++.+++.|...|+
T Consensus 53 ylYIL~v-mgffgff~~GImLsYiRSKk 79 (138)
T 2k21_A 53 ALYVLMV-LGFFGFFTLGIMLSYIRSKK 79 (138)
T ss_dssp TCHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHH-HHHHHHHHHHHHHHHhHhhh
Confidence 4444433 33333333333334444333
No 135
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=75.64 E-value=2 Score=25.53 Aligned_cols=35 Identities=17% Similarity=0.464 Sum_probs=23.8
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHH
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDE 109 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~ 109 (139)
+...|.+|...|..-..--.-..||++|+.+|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 34469999998874322122335999999999654
No 136
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=75.62 E-value=1.9 Score=26.18 Aligned_cols=36 Identities=14% Similarity=0.345 Sum_probs=24.8
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHH
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEW 110 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~w 110 (139)
+...|.+|...|..-..--.-..||++|+..|...+
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 345699999988743222223359999999997654
No 137
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=75.59 E-value=2.5 Score=32.47 Aligned_cols=46 Identities=26% Similarity=0.375 Sum_probs=31.9
Q ss_pred CccccCcccccCCCceeecCCCCCc--ccHHHHHHHHhCC--CCCcccCCCCC
Q 035703 77 GPCSICLCDYKPKDSVRCIPDCHHC--FHADCVDEWLRMS--ATCPLCRSSPA 125 (139)
Q Consensus 77 ~~C~ICl~~~~~~~~~~~lp~C~H~--fH~~Ci~~wl~~~--~~CP~CR~~v~ 125 (139)
..|+|=...+..+ ++-.. |.|. |-.+-+.....+. -.||+|.+.+.
T Consensus 250 L~CPlS~~ri~~P--vRg~~-C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 250 LQCPISYTRMKYP--SKSIN-CKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp SBCTTTSSBCSSE--EEETT-CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred ecCCCcccccccc--CcCCc-CCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 4699888887753 55565 9998 6666655554333 37999988764
No 138
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=75.39 E-value=2.6 Score=24.06 Aligned_cols=41 Identities=17% Similarity=0.506 Sum_probs=28.7
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
....|+-|-+.+..++.+... -|..||.+|+ .|-.|++++.
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~ 50 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFP 50 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEE--TTEEECTTTC--------CCTTTCCCCG
T ss_pred CCCCchhcCCccCCCceEEEe--CccEeccccC--------eECCCCCCCC
Confidence 456799999988755544322 5678998874 4888887765
No 139
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=74.56 E-value=2.3 Score=24.43 Aligned_cols=32 Identities=31% Similarity=0.654 Sum_probs=24.6
Q ss_pred CCCCccccCcccccCCCceeecCCC-CCcccHHHHHHH
Q 035703 74 NDYGPCSICLCDYKPKDSVRCIPDC-HHCFHADCVDEW 110 (139)
Q Consensus 74 ~~~~~C~ICl~~~~~~~~~~~lp~C-~H~fH~~Ci~~w 110 (139)
++..-|.||.++ ..++-+. | |-+|+..|+.+.
T Consensus 6 ee~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNED----ATLRCAG-CDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSC----CCEEETT-TTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCC----CeEEecC-CCCceehHHHHHHH
Confidence 355569999888 3477776 9 689999998775
No 140
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=74.10 E-value=1.5 Score=30.93 Aligned_cols=35 Identities=17% Similarity=0.486 Sum_probs=24.4
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHH
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDE 109 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~ 109 (139)
++..|.+|...|..-..--.-..||++||..|-..
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 56789999998874322222335999999998543
No 141
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=73.88 E-value=3.1 Score=31.87 Aligned_cols=46 Identities=22% Similarity=0.393 Sum_probs=32.6
Q ss_pred CccccCcccccCCCceeecCCCCCc--ccHHHHHHHHhCC--CCCcccCCCCC
Q 035703 77 GPCSICLCDYKPKDSVRCIPDCHHC--FHADCVDEWLRMS--ATCPLCRSSPA 125 (139)
Q Consensus 77 ~~C~ICl~~~~~~~~~~~lp~C~H~--fH~~Ci~~wl~~~--~~CP~CR~~v~ 125 (139)
..|+|=...+..+ ++-.. |.|. |-..-+.....+. -.||+|.+.+.
T Consensus 216 L~CPlS~~ri~~P--~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 216 LMCPLGKMRLTIP--CRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp SBCTTTCSBCSSE--EEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeCCCccceeccC--CcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 4599888887753 55565 9998 7776666555433 37999998765
No 142
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=73.75 E-value=2.1 Score=27.64 Aligned_cols=34 Identities=18% Similarity=0.390 Sum_probs=23.1
Q ss_pred CCccccCcccccCCCceeecCCCCCcccHHHHHH
Q 035703 76 YGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDE 109 (139)
Q Consensus 76 ~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~ 109 (139)
...|.+|...|..-..--.-..||++|+..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 3469999998874322222335999999999543
No 143
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=73.40 E-value=3.2 Score=24.03 Aligned_cols=40 Identities=25% Similarity=0.444 Sum_probs=29.4
Q ss_pred CccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCCC
Q 035703 77 GPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPAT 126 (139)
Q Consensus 77 ~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~~ 126 (139)
..|..|-+.+..++.+. .. =+..||.+|+ .|-.|++++..
T Consensus 16 ~~C~~C~~~I~~~~~~~-~a-~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNV-EY-KGTVWHKDCF--------TCSNCKQVIGT 55 (82)
T ss_dssp CBCSSSCCBCCSSSCEE-EC-SSCEEETTTC--------CCSSSCCCCTT
T ss_pred CcCccCCcccccCceEE-EE-CccccccccC--------chhhCCCccCC
Confidence 57999999888666543 22 5788999884 58889888763
No 144
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=73.20 E-value=1.6 Score=31.02 Aligned_cols=36 Identities=17% Similarity=0.458 Sum_probs=25.3
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHH
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEW 110 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~w 110 (139)
++..|.+|...|..-..--....||++||..|-...
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 567899999988743222223359999999996543
No 145
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=72.75 E-value=1.3 Score=27.54 Aligned_cols=42 Identities=19% Similarity=0.347 Sum_probs=25.9
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
.+..||.|..+++.......-..|+-.| .....||-|.+++.
T Consensus 31 M~~~CP~Cq~eL~~~g~~~hC~~C~~~f---------~~~a~CPdC~q~Le 72 (101)
T 2jne_A 31 MELHCPQCQHVLDQDNGHARCRSCGEFI---------EMKALCPDCHQPLQ 72 (101)
T ss_dssp CCCBCSSSCSBEEEETTEEEETTTCCEE---------EEEEECTTTCSBCE
T ss_pred ccccCccCCCcceecCCEEECccccchh---------hccccCcchhhHHH
Confidence 3367999998876533333233355433 33446999998875
No 146
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.65 E-value=2.7 Score=25.05 Aligned_cols=34 Identities=21% Similarity=0.662 Sum_probs=22.5
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHH
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVD 108 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~ 108 (139)
+...|.+|...|..-..--.-..||.+|+..|..
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 3456999999886432111223599999999954
No 147
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=72.24 E-value=3.2 Score=23.41 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=27.3
Q ss_pred CCccccCcccccC--CCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 76 YGPCSICLCDYKP--KDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 76 ~~~C~ICl~~~~~--~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
...|.-|-+.+.. ++.+. .. -+..||.+|+ .|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~-~a-~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYI-SF-EERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCE-EC-SSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcceE-EE-CCcccCcccC--------EeccCCCcCC
Confidence 3468889888775 33332 22 6788998884 5888888775
No 148
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=71.64 E-value=0.48 Score=25.74 Aligned_cols=41 Identities=20% Similarity=0.491 Sum_probs=25.1
Q ss_pred cCcccccCCCceeecCCCCCcccHHHHHHHH---hCCCCCcccCC
Q 035703 81 ICLCDYKPKDSVRCIPDCHHCFHADCVDEWL---RMSATCPLCRS 122 (139)
Q Consensus 81 ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl---~~~~~CP~CR~ 122 (139)
||..... +...+.-..|+..||..|+.--- .....||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 5765544 33333444599999999985322 23447888864
No 149
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=71.22 E-value=0.46 Score=30.73 Aligned_cols=50 Identities=18% Similarity=0.355 Sum_probs=30.0
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSP 124 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v 124 (139)
+...|..|-..|..-..--.-..||.+|+.+|-.......+.|-.|...+
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~ 67 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFR 67 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHH
Confidence 34579999998864221122336999999999766554556677775543
No 150
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=71.03 E-value=3.5 Score=23.19 Aligned_cols=39 Identities=23% Similarity=0.513 Sum_probs=20.9
Q ss_pred CccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 77 GPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 77 ~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
..|..|-+.+...+... .. =+..||.+|+ .|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~~~~~-~a-~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAGV-VA-LDRVFHVGCF--------VCSTCRAQLR 44 (72)
T ss_dssp CCCSSSCSCCCSSSCCE-EC-SSSEECTTTC--------BCSSSCCBCT
T ss_pred CCCccCCCccCCCceEE-EE-CCCeEcccCC--------cccccCCcCC
Confidence 35667766655433222 22 4566676663 3666666653
No 151
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.99 E-value=2.1 Score=24.58 Aligned_cols=39 Identities=18% Similarity=0.375 Sum_probs=29.3
Q ss_pred CCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 76 YGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 76 ~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
...|..|-+.+..++.+. . -+..||.+|+ .|-.|++++.
T Consensus 9 ~~~C~~C~~~I~~~~~v~--a-~~~~~H~~CF--------~C~~C~~~L~ 47 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS--S-LGKDWHKFCL--------KCERCSKTLT 47 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE--E-TTEEEETTTC--------BCSSSCCBCC
T ss_pred CCCCcCCCCEeECCeEEE--E-CCeEeeCCCC--------CCCCCCCccC
Confidence 457999999888666543 2 5788999884 4889988876
No 152
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.45 E-value=4.1 Score=23.78 Aligned_cols=40 Identities=20% Similarity=0.432 Sum_probs=28.8
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
....|.-|-+.+...+.+. . -+..||.+|+ .|-.|++.+.
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a-~~~~wH~~CF--------~C~~C~~~L~ 53 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--V-NGHFFHRSCF--------RCHTCEATLW 53 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--B-TTBCCBTTTC--------BCSSSCCBCC
T ss_pred CCCCCcccCCCcccceEEE--E-CCCeeCCCcC--------EEcCCCCCcC
Confidence 4567999999887655543 2 5678999884 4777877765
No 153
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=69.45 E-value=6.3 Score=23.30 Aligned_cols=40 Identities=15% Similarity=0.379 Sum_probs=28.9
Q ss_pred CCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 74 NDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 74 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
.....|.-|-+.+. ++.+ .. -+..||.+|+ .|-.|+++|.
T Consensus 23 ~~~~~C~~C~~~I~-~~~v--~a-~~~~~H~~CF--------~C~~C~~~L~ 62 (90)
T 2dar_A 23 KRTPMCAHCNQVIR-GPFL--VA-LGKSWHPEEF--------NCAHCKNTMA 62 (90)
T ss_dssp TCCCBBSSSCCBCC-SCEE--EE-TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCCccCCCEec-ceEE--EE-CCccccccCC--------ccCCCCCCCC
Confidence 35567999999885 3333 22 6788999884 5889988876
No 154
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=69.30 E-value=4.2 Score=23.26 Aligned_cols=39 Identities=18% Similarity=0.366 Sum_probs=26.7
Q ss_pred CccccCcccccC--CCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 77 GPCSICLCDYKP--KDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 77 ~~C~ICl~~~~~--~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
..|+-|-+.+.. ++... .. -+..||.+|+ .|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~-~a-~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFI-CF-QDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEE-EE-TTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeE-EE-CCcccCcccC--------ChhhCCCcCC
Confidence 469999888874 33332 22 6778999884 4788877765
No 155
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=68.62 E-value=1.4 Score=21.16 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=18.3
Q ss_pred CccccCcccccCCCceeecCCCCCcccHHHH
Q 035703 77 GPCSICLCDYKPKDSVRCIPDCHHCFHADCV 107 (139)
Q Consensus 77 ~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci 107 (139)
+.|+.|-..+-..+.+. .=|..||+.|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~~---~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN---CLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCC---SSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEE---ECCeEecccCC
Confidence 46888877665444433 25678998884
No 156
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.44 E-value=4.1 Score=23.74 Aligned_cols=40 Identities=20% Similarity=0.441 Sum_probs=29.8
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
....|.-|-+.+..++.+.. -+..||.+|+ .|-.|+.+|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a---~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA---LDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE---TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE---CCcccccccC--------CcCcCCCCcC
Confidence 45679999998876665442 4678999884 5889988875
No 157
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=68.41 E-value=8.4 Score=28.04 Aligned_cols=40 Identities=20% Similarity=0.256 Sum_probs=17.7
Q ss_pred CCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 035703 11 STAATTTTGVGLGYGIAIAVSILVLISTIMLASYACIRVK 50 (139)
Q Consensus 11 ~~~~~~~~~~~~~~~i~i~l~~~~~i~~~~~~~~~~~r~~ 50 (139)
.++++.+.++..-+...+++.+++++++.+++++...|.+
T Consensus 20 ~~asp~a~~i~~l~~~~~~i~~~I~v~V~~ll~~~~~r~r 59 (262)
T 2gsm_B 20 PSASPVATQIHWLDGFILVIIAAITIFVTLLILYAVWRFH 59 (262)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSB
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555444444444444444444444444443333
No 158
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=68.37 E-value=6.6 Score=26.53 Aligned_cols=46 Identities=28% Similarity=0.639 Sum_probs=31.0
Q ss_pred CCCCCccccCcccccCCCceeecC--CCCCcccHHHHHHHHhCCC----------CCcccCC
Q 035703 73 TNDYGPCSICLCDYKPKDSVRCIP--DCHHCFHADCVDEWLRMSA----------TCPLCRS 122 (139)
Q Consensus 73 ~~~~~~C~ICl~~~~~~~~~~~lp--~C~H~fH~~Ci~~wl~~~~----------~CP~CR~ 122 (139)
...+..|.||-+. ..+..-. .|...|+.+||+..+.... .|=+|.-
T Consensus 76 DG~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 76 DGYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp TSSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 3356679999764 3344333 4889999999999874321 5877753
No 159
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=68.21 E-value=3.2 Score=27.21 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=23.3
Q ss_pred CCCCccccCccccc-CCCceeecCCCCCcccHHHHH
Q 035703 74 NDYGPCSICLCDYK-PKDSVRCIPDCHHCFHADCVD 108 (139)
Q Consensus 74 ~~~~~C~ICl~~~~-~~~~~~~lp~C~H~fH~~Ci~ 108 (139)
.+...|.+|...|. ....-..-..|.|.+|.+|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 46678999999984 222222333599999988843
No 160
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=67.79 E-value=2.1 Score=24.55 Aligned_cols=42 Identities=7% Similarity=-0.029 Sum_probs=19.5
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccH-HHHHHHHhCCCCCcccC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHA-DCVDEWLRMSATCPLCR 121 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~-~Ci~~wl~~~~~CP~CR 121 (139)
+-..|..|...+..+. .. .. =|..|+. .|..+-+ ...|-.|.
T Consensus 26 ~CF~C~~C~~~L~~~~-~~-~~-~g~~yC~~~cy~~~f--~~~C~~C~ 68 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGG-HA-EH-EGKPYCNHPCYSAMF--GPKGFGRG 68 (76)
T ss_dssp TTCBCTTTCCBCCTTT-EE-EE-TTEEEETTTHHHHHS--SCCCSSCC
T ss_pred CCCCccccCccCCCCc-eE-Cc-CCeEeeCHHHHHHHh--CccCCCcC
Confidence 3455666665555432 11 11 3455665 3654432 23455554
No 161
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=67.57 E-value=1 Score=28.36 Aligned_cols=23 Identities=26% Similarity=0.715 Sum_probs=15.1
Q ss_pred CCCCcccHHHHHHHHhCCCCCcccCCCC
Q 035703 97 DCHHCFHADCVDEWLRMSATCPLCRSSP 124 (139)
Q Consensus 97 ~C~H~fH~~Ci~~wl~~~~~CP~CR~~v 124 (139)
.||+.|. .=+.....||.|+..-
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCC
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCc
Confidence 4999991 1123345799999864
No 162
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=67.17 E-value=5 Score=22.32 Aligned_cols=41 Identities=17% Similarity=0.506 Sum_probs=29.9
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
....|.-|-..+..++.+... =+..||.+|+ .|-.|.+++.
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~ 50 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFP 50 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCG
T ss_pred CCccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCC
Confidence 445799999998876654322 5678999885 5888888765
No 163
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=66.15 E-value=3.5 Score=26.10 Aligned_cols=35 Identities=14% Similarity=0.287 Sum_probs=19.7
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHH
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWL 111 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl 111 (139)
+-..|..|-..+..++... .. =+..||..|....+
T Consensus 35 ~CF~C~~C~~~L~~g~~f~-~~-~g~~yC~~cy~~~~ 69 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRYL-LI-NSDIVCEQDIYEWT 69 (123)
T ss_dssp TTCBCTTTCCBCCTTCEEE-EC-SSSEEEGGGHHHHH
T ss_pred ccCccccCCCCCCCCCcEE-ee-CCEEEcHHHhHHHh
Confidence 4456677766664444332 22 45667777766655
No 164
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.19 E-value=6.7 Score=23.24 Aligned_cols=40 Identities=20% Similarity=0.590 Sum_probs=27.9
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
....|.-|-+.+...+.+ .. -+..||.+|+ .|-.|+.+|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v--~a-~~~~~H~~CF--------~C~~C~~~L~ 53 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERL--LA-NQQVFHISCF--------RCSYCNNKLS 53 (91)
T ss_dssp SSCBCTTTCCBCCTTSEE--EC-SSSEEETTTC--------BCTTTCCBCC
T ss_pred CCCcCccCCCccCCceeE--EE-CCCEECCCCC--------eeCCCCCCCC
Confidence 455799998888765543 23 6778888874 4777877765
No 165
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=64.69 E-value=0.57 Score=23.40 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=10.6
Q ss_pred CCCccccCcccccCCC
Q 035703 75 DYGPCSICLCDYKPKD 90 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~ 90 (139)
++..||||+.++...+
T Consensus 4 EGFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 4 EGFICPQCMKSLGSAD 19 (34)
T ss_dssp EEEECTTTCCEESSHH
T ss_pred cccCCcHHHHHcCCHH
Confidence 3467888887776543
No 166
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=64.41 E-value=3.6 Score=23.06 Aligned_cols=42 Identities=29% Similarity=0.638 Sum_probs=28.4
Q ss_pred CccccCcccccCCCceeecCCCCCcccHHHHHHHH-hCCCCCccc
Q 035703 77 GPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWL-RMSATCPLC 120 (139)
Q Consensus 77 ~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl-~~~~~CP~C 120 (139)
..|--|...+.... ...-+.|++.|+.+| +.++ +.=.+||.|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dC-D~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDC-DVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHH-HHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccch-hHHHHhhccCCcCC
Confidence 35999988885322 234567999999999 3332 334479988
No 167
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.05 E-value=7.6 Score=22.39 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=27.4
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
....|.-|-+.+. ++.+ . .-+..||.+|+ .|-.|+.+|.
T Consensus 14 ~~~~C~~C~~~I~-~~~v--~-a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 2cor_A 14 GKYICQKCHAIID-EQPL--I-FKNDPYHPDHF--------NCANCGKELT 52 (79)
T ss_dssp CCCBCTTTCCBCC-SCCC--C-CSSSCCCTTTS--------BCSSSCCBCC
T ss_pred CCCCCccCCCEec-ceEE--E-ECcceeCCCCC--------EeCCCCCccC
Confidence 4457999988877 3332 2 26778998874 5888888876
No 168
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=62.72 E-value=5.1 Score=26.85 Aligned_cols=33 Identities=21% Similarity=0.614 Sum_probs=23.6
Q ss_pred CCCCccccCccccc--CCCceeecCCCCCcccHHHH
Q 035703 74 NDYGPCSICLCDYK--PKDSVRCIPDCHHCFHADCV 107 (139)
Q Consensus 74 ~~~~~C~ICl~~~~--~~~~~~~lp~C~H~fH~~Ci 107 (139)
.++..|.+|...|. .+...... .|+|.+|.+|-
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~-~C~~~VC~~C~ 100 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCL-ECSLFVCKSCS 100 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECT-TTCCEECGGGE
T ss_pred CCCccchhhcCccccccCCCCcCC-CCCchhhcccc
Confidence 36778999999864 23333334 49999999985
No 169
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=62.54 E-value=4.3 Score=24.27 Aligned_cols=11 Identities=18% Similarity=0.709 Sum_probs=6.1
Q ss_pred ccccCcccccC
Q 035703 78 PCSICLCDYKP 88 (139)
Q Consensus 78 ~C~ICl~~~~~ 88 (139)
.|+.|..++..
T Consensus 4 ~CP~C~~~l~~ 14 (81)
T 2jrp_A 4 TCPVCHHALER 14 (81)
T ss_dssp CCSSSCSCCEE
T ss_pred CCCCCCCcccc
Confidence 46666655544
No 170
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=61.29 E-value=3.8 Score=23.67 Aligned_cols=39 Identities=15% Similarity=0.262 Sum_probs=27.8
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
....|.-|-+.+.. +. +.. -+..||.+|+ .|-.|+++|.
T Consensus 14 ~~~~C~~C~~~I~~-~~--~~a-~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVG-VF--VKL-RDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCS-SC--EEC-SSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCccccCCCCccC-cE--EEE-CcceeCcCcC--------eeCCCCCCCC
Confidence 45679999988874 32 233 6788999885 4888887764
No 171
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=60.72 E-value=8.3 Score=29.80 Aligned_cols=47 Identities=30% Similarity=0.631 Sum_probs=31.7
Q ss_pred CCCCCccccCcccccCCCceeecC--CCCCcccHHHHHHHHhCC----------CCCcccCCC
Q 035703 73 TNDYGPCSICLCDYKPKDSVRCIP--DCHHCFHADCVDEWLRMS----------ATCPLCRSS 123 (139)
Q Consensus 73 ~~~~~~C~ICl~~~~~~~~~~~lp--~C~H~fH~~Ci~~wl~~~----------~~CP~CR~~ 123 (139)
...+..|.+|-+. ++ +..-. .|...||.+||+..+... =.|=+|.-.
T Consensus 90 DG~~~yCr~C~~G---g~-l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 90 DGYQSYCSICCSG---ET-LLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSSBCSCTTTCCC---SS-CEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCCcccceEcCCC---Ce-EEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 3356679999764 33 33333 589999999999998322 268888543
No 172
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=60.68 E-value=1.1 Score=26.16 Aligned_cols=39 Identities=23% Similarity=0.453 Sum_probs=24.9
Q ss_pred CCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 76 YGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 76 ~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
...|..|-+.+..++.+. . -+..||.+|+ .|-.|++++.
T Consensus 7 ~~~C~~C~~~I~~~~~~~--a-~~~~~H~~CF--------~C~~C~~~L~ 45 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQ--C-DGRSFHRCCF--------LCMVCRKNLD 45 (81)
T ss_dssp -CBCSSSCCBCSSTTEEE--E-TTEEEESSSE--------ECSSSCCEEC
T ss_pred CCcCcCcCccccCceeEE--e-CCcccccccC--------ccCCCCCCCC
Confidence 346888888776555432 2 5677887774 3777777664
No 173
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=60.62 E-value=9.5 Score=22.02 Aligned_cols=46 Identities=22% Similarity=0.447 Sum_probs=29.8
Q ss_pred ccCcccccCCCceeecCCCCCcccHHHHHHHHh-----CCCCCcccCCCCC
Q 035703 80 SICLCDYKPKDSVRCIPDCHHCFHADCVDEWLR-----MSATCPLCRSSPA 125 (139)
Q Consensus 80 ~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~-----~~~~CP~CR~~v~ 125 (139)
-||......+...+.-..|.-.||..|+.---. ....||.|+....
T Consensus 13 CiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~~ 63 (75)
T 3kqi_A 13 CVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHG 63 (75)
T ss_dssp TTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHHC
T ss_pred EECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccCC
Confidence 388776543444444445999999999853211 3457999976544
No 174
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=60.31 E-value=3.9 Score=25.46 Aligned_cols=11 Identities=36% Similarity=1.238 Sum_probs=10.2
Q ss_pred ccHHHHHHHHh
Q 035703 102 FHADCVDEWLR 112 (139)
Q Consensus 102 fH~~Ci~~wl~ 112 (139)
||.+|+..|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999984
No 175
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=59.95 E-value=4 Score=25.37 Aligned_cols=11 Identities=36% Similarity=1.150 Sum_probs=10.2
Q ss_pred ccHHHHHHHHh
Q 035703 102 FHADCVDEWLR 112 (139)
Q Consensus 102 fH~~Ci~~wl~ 112 (139)
||.+|+..|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999984
No 176
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=59.00 E-value=3.8 Score=24.96 Aligned_cols=47 Identities=17% Similarity=0.272 Sum_probs=27.3
Q ss_pred CCCCCccccCcccccCCCceeecCCCC---CcccHHHHHHHH--hCCCCCcc-cCC
Q 035703 73 TNDYGPCSICLCDYKPKDSVRCIPDCH---HCFHADCVDEWL--RMSATCPL-CRS 122 (139)
Q Consensus 73 ~~~~~~C~ICl~~~~~~~~~~~lp~C~---H~fH~~Ci~~wl--~~~~~CP~-CR~ 122 (139)
.++...| ||..... ++ .+.-.+|+ ..||..|+..=- ...-.||. |++
T Consensus 23 ~~~~~yC-iC~~~~~-g~-MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 23 NQEEVYC-FCRNVSY-GP-MVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp -CCSCCS-TTTCCCS-SS-EECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCCCcEE-EeCCCCC-CC-EEEecCCCCccccCcCccCCCCcCCCCCccCChhhcc
Confidence 3455668 9987532 33 33344555 689999985210 12346999 863
No 177
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=57.76 E-value=15 Score=17.87 Aligned_cols=28 Identities=39% Similarity=0.292 Sum_probs=14.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035703 21 GLGYGIAIAVSILVLISTIMLASYACIR 48 (139)
Q Consensus 21 ~~~~~i~i~l~~~~~i~~~~~~~~~~~r 48 (139)
+.+-..+++++-++.+.++.+..|++.|
T Consensus 5 ~~gaIaGIVvgdi~~t~~i~~~vy~~~r 32 (33)
T 2l34_A 5 SPGVLAGIVVGDLVLTVLIALAVYFLGR 32 (33)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CcceEEeEeHHHHHHHHHHHHHHhheec
Confidence 3344455666666655555555555443
No 178
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=56.60 E-value=2.3 Score=32.71 Aligned_cols=50 Identities=18% Similarity=0.350 Sum_probs=0.0
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHh-------CCCCCcccCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLR-------MSATCPLCRSSP 124 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~-------~~~~CP~CR~~v 124 (139)
+...|.+|...|..-..-.....||++||..|-...+. ..+.|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 34679999988864321112225999999999876541 134577775544
No 179
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.36 E-value=3.7 Score=22.90 Aligned_cols=37 Identities=24% Similarity=0.515 Sum_probs=22.5
Q ss_pred CccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 77 GPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 77 ~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
..|.-|-+.+.. +.+. . -+..||.+|+ .|-.|++++.
T Consensus 6 ~~C~~C~~~I~~-~~~~--a-~~~~~H~~CF--------~C~~C~~~L~ 42 (69)
T 2cur_A 6 SGCVKCNKAITS-GGIT--Y-QDQPWHADCF--------VCVTCSKKLA 42 (69)
T ss_dssp CCCSSSCCCCCT-TCEE--E-TTEEECTTTT--------BCTTTCCBCT
T ss_pred CCCcccCCEeCc-ceEE--E-CccccccCcC--------EECCCCCCCC
Confidence 457777777653 3222 2 4567777763 4777777764
No 180
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.04 E-value=8.9 Score=22.07 Aligned_cols=39 Identities=23% Similarity=0.412 Sum_probs=27.0
Q ss_pred CccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 77 GPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 77 ~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
..|.-|-+.+..++.+. .. =+..||.+|+ .|-.|++++.
T Consensus 16 ~~C~~C~~~I~~~~~~~-~a-~~~~~H~~CF--------~C~~C~~~L~ 54 (82)
T 2ehe_A 16 NTCAECQQLIGHDSREL-FY-EDRHFHEGCF--------RCCRCQRSLA 54 (82)
T ss_dssp CBCTTTCCBCCSSCCBC-CC-SSCCCBTTTS--------BCTTTCCBCS
T ss_pred CcCccCCCccccCcEEE-Ee-CCccccccCC--------eecCCCCccC
Confidence 46999988887434332 22 5788999884 4888888775
No 181
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=55.32 E-value=13 Score=21.74 Aligned_cols=40 Identities=18% Similarity=0.345 Sum_probs=29.1
Q ss_pred CCCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 74 NDYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 74 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
.....|.-|-+.+.. +.+ .. -+..||.+|+ .|-.|++.|.
T Consensus 23 ~~~~~C~~C~~~I~~-~~~--~a-~~~~~H~~CF--------~C~~C~~~L~ 62 (89)
T 1x64_A 23 QRMPLCDKCGSGIVG-AVV--KA-RDKYRHPECF--------VCADCNLNLK 62 (89)
T ss_dssp CSCCBCTTTCCBCCS-CCE--ES-SSCEECTTTC--------CCSSSCCCTT
T ss_pred CcCCCcccCCCEecc-cEE--EE-CCceECccCC--------EecCCCCCCC
Confidence 345679999998874 322 22 6789999884 4889988875
No 182
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=55.04 E-value=6.8 Score=21.52 Aligned_cols=38 Identities=13% Similarity=0.282 Sum_probs=26.8
Q ss_pred CCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 76 YGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 76 ~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
...|+-|-+.+. ++. +.. -+..||.+|+ .|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~-~~~--~~a-~~~~~H~~CF--------~C~~C~~~L~ 42 (66)
T 1nyp_A 5 VPICGACRRPIE-GRV--VNA-MGKQWHVEHF--------VCAKCEKPFL 42 (66)
T ss_dssp CCEETTTTEECC-SCE--ECC-TTSBEETTTC--------BCTTTCCBCS
T ss_pred CCCCcccCCEec-ceE--EEE-CccccccCcC--------EECCCCCCCC
Confidence 346899988877 332 233 6788999884 4888888875
No 183
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=52.75 E-value=10 Score=21.50 Aligned_cols=39 Identities=23% Similarity=0.386 Sum_probs=27.6
Q ss_pred CccccCcccccC---CCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 77 GPCSICLCDYKP---KDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 77 ~~C~ICl~~~~~---~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
..|+-|-+.+.. ++... .. =+..||.+|+ .|-.|++++.
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~-~a-~~~~~H~~CF--------~C~~C~~~L~ 57 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVV-AY-EGQSWHDYCF--------HCKKCSVNLA 57 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEE-EE-TTEEEETTTC--------BCSSSCCBCT
T ss_pred ccCcccCCcccCCCCCceeE-EE-CcceeCcccC--------EehhcCCCCC
Confidence 569999988874 23332 22 5678999884 5899988875
No 184
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=51.86 E-value=8.1 Score=25.76 Aligned_cols=9 Identities=22% Similarity=0.888 Sum_probs=4.4
Q ss_pred CCcccCCCC
Q 035703 116 TCPLCRSSP 124 (139)
Q Consensus 116 ~CP~CR~~v 124 (139)
.|-.|++.+
T Consensus 95 ~C~~C~~~L 103 (169)
T 2rgt_A 95 ACVVCKRQL 103 (169)
T ss_dssp BCTTTCCBC
T ss_pred cCCCCCCCC
Confidence 355555544
No 185
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=51.61 E-value=11 Score=30.02 Aligned_cols=49 Identities=22% Similarity=0.360 Sum_probs=31.4
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHh-----CCCCCcccCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLR-----MSATCPLCRSSP 124 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~-----~~~~CP~CR~~v 124 (139)
+...| ||......+...+....|.-.||..|+.---. ....||.|+..-
T Consensus 36 ~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 36 PPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp CCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred CCeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 34446 99877653444444556999999999843211 234799998643
No 186
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=49.72 E-value=30 Score=18.87 Aligned_cols=7 Identities=29% Similarity=0.634 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 035703 39 IMLASYA 45 (139)
Q Consensus 39 ~~~~~~~ 45 (139)
+.+++|.
T Consensus 26 ii~~LwK 32 (54)
T 2l8s_A 26 LILALWK 32 (54)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333443
No 187
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.67 E-value=8.4 Score=21.36 Aligned_cols=37 Identities=22% Similarity=0.528 Sum_probs=24.2
Q ss_pred CccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 77 GPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 77 ~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
..|.-|-+.+.. +.+ .. -+..||.+|+ .|-.|++++.
T Consensus 6 ~~C~~C~~~I~~-~~~--~a-~~~~~H~~CF--------~C~~C~~~L~ 42 (70)
T 2d8z_A 6 SGCVQCKKPITT-GGV--TY-REQPWHKECF--------VCTACRKQLS 42 (70)
T ss_dssp CBCSSSCCBCCS-SEE--ES-SSSEEETTTS--------BCSSSCCBCT
T ss_pred CCCcccCCeecc-ceE--EE-CccccCCCCC--------ccCCCCCcCC
Confidence 458888877763 322 22 5678888773 4778877764
No 188
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.62 E-value=13 Score=21.28 Aligned_cols=37 Identities=16% Similarity=0.392 Sum_probs=25.2
Q ss_pred CccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 77 GPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 77 ~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
..|..|-+.+. ++.+ . .-+..||.+|+ .|-.|++++.
T Consensus 16 ~~C~~C~~~I~-~~~~--~-a~~~~~H~~CF--------~C~~C~~~L~ 52 (81)
T 1x6a_A 16 EFCHGCSLLMT-GPFM--V-AGEFKYHPECF--------ACMSCKVIIE 52 (81)
T ss_dssp CBCTTTCCBCC-SCCB--C-CTTCCBCTTSC--------BCTTTCCBCC
T ss_pred CcCccCCCCcC-ceEE--E-ECCceeccccC--------CccCCCCccC
Confidence 46888888877 3322 2 25778888773 4888888875
No 189
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.22 E-value=18 Score=20.70 Aligned_cols=47 Identities=23% Similarity=0.384 Sum_probs=26.7
Q ss_pred CCCccccCcccccCCCceeecCCCC---CcccHHHHHHHH--hCCCCCcccCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCH---HCFHADCVDEWL--RMSATCPLCRSSP 124 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~---H~fH~~Ci~~wl--~~~~~CP~CR~~v 124 (139)
+...| ||... ..++ .+.-.+|+ ..||..|+..-- ...-.||.|+...
T Consensus 5 ~~~yC-~C~~~-~~g~-MI~CD~cdC~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 5 SSGYC-ICNQV-SYGE-MVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CCCCS-TTSCC-CCSS-EECCSCTTCSCCCEEHHHHTCSSCCSSCCCCHHHHHHH
T ss_pred CCeEE-EcCCC-CCCC-EeEeCCCCCCccCCcccccccCcCCCCCEECCCCCccc
Confidence 44556 58765 2333 33333453 789999997211 1233699997543
No 190
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=49.08 E-value=25 Score=17.80 Aligned_cols=18 Identities=39% Similarity=0.475 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 035703 33 LVLISTIMLASYACIRVK 50 (139)
Q Consensus 33 ~~~i~~~~~~~~~~~r~~ 50 (139)
..++..++++.|..+|.+
T Consensus 21 aGiIG~IllI~y~I~rl~ 38 (40)
T 1afo_A 21 AGVIGTILLISYGIRRLI 38 (40)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334556666666555543
No 191
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.97 E-value=12 Score=20.66 Aligned_cols=38 Identities=21% Similarity=0.518 Sum_probs=24.1
Q ss_pred CCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 76 YGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 76 ~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
...|.-|-+.+.. +.+. . -+..||.+|+ .|-.|+++|.
T Consensus 5 ~~~C~~C~~~I~~-~~~~--a-~~~~~H~~CF--------~C~~C~~~L~ 42 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVIK--A-MNNSWHPECF--------RCDLCQEVLA 42 (70)
T ss_dssp SSBCSSSCCBCCS-CCEE--E-TTEEECTTTS--------BCSSSCCBCS
T ss_pred CCcCccCCCEecc-eEEE--E-CcccccccCC--------EeCCCCCcCC
Confidence 3468888777763 3222 2 5667888774 4777877765
No 192
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.62 E-value=15 Score=20.72 Aligned_cols=37 Identities=19% Similarity=0.386 Sum_probs=21.6
Q ss_pred CccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 77 GPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 77 ~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
..|+-|-..+.. +.+ . .-+..||.+|+ .|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~-~~v--~-a~~~~wH~~CF--------~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG-RVL--E-AGEKHYHPSCA--------LCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS-CCB--C-CSSCCBCTTTS--------CCSSSCCCCC
T ss_pred CCcccCCCEecC-eeE--E-eCCCCCCCCcC--------EeCCCCCCCC
Confidence 357777776653 221 2 25667777663 4666766654
No 193
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=47.95 E-value=3.4 Score=32.56 Aligned_cols=47 Identities=21% Similarity=0.362 Sum_probs=30.0
Q ss_pred cccCcccccCCCceeecCCCCCcccHHHHHHHH-----hCCCCCcccCCCCC
Q 035703 79 CSICLCDYKPKDSVRCIPDCHHCFHADCVDEWL-----RMSATCPLCRSSPA 125 (139)
Q Consensus 79 C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl-----~~~~~CP~CR~~v~ 125 (139)
.-||......+...+....|.-.||..|+.--- ..+..||.|+....
T Consensus 7 yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~ 58 (447)
T 3kv4_A 7 YCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHG 58 (447)
T ss_dssp ETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHC
T ss_pred EEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccC
Confidence 448877654334444455699999999984211 13458999976543
No 194
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=47.28 E-value=13 Score=22.15 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=29.1
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPAT 126 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~~ 126 (139)
+-..|..|...+.... .. .. =|..|+..|..+- -...|..|.++|.+
T Consensus 32 ~CF~C~~C~~~L~~~~-~~-~~-~g~~yC~~cy~~~--~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 32 TCFRCAKCLHPLANET-FV-AK-DNKILCNKCTTRE--DSPKCKGCFKAIVA 78 (101)
T ss_dssp TTCCCSSSCCCTTSSC-CE-EE-TTEEECHHHHTTC--CCCBCSSSCCBCCS
T ss_pred cCCcccccCCCCCcCe-eE-Cc-CCEEEChhHhhhh--cCCccccCCCcccc
Confidence 4566888877775322 22 22 4667888876432 23479999888863
No 195
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=46.74 E-value=5.8 Score=22.51 Aligned_cols=44 Identities=25% Similarity=0.412 Sum_probs=26.5
Q ss_pred CccccCcccccCCCceeecC--CCCCcccHHHHHHHH--------hCCCCCcccCC
Q 035703 77 GPCSICLCDYKPKDSVRCIP--DCHHCFHADCVDEWL--------RMSATCPLCRS 122 (139)
Q Consensus 77 ~~C~ICl~~~~~~~~~~~lp--~C~H~fH~~Ci~~wl--------~~~~~CP~CR~ 122 (139)
..| ||-.....+..+. -. .|...||..|+.--- ..+..||.||.
T Consensus 11 v~C-~C~~~~~~g~mI~-CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQ-CEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSCEEE-CSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCCEEE-ECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 447 7976655544333 32 388899999973210 01356999974
No 196
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=46.39 E-value=7.9 Score=24.60 Aligned_cols=39 Identities=15% Similarity=0.473 Sum_probs=28.6
Q ss_pred CCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 76 YGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 76 ~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
...|.-|-+.+.....+. . -+..||.+|+ .|-.|+.++.
T Consensus 61 ~~~C~~C~~~I~~~~~v~--a-~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLY--A-MDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEE--E-TTEEEETTTS--------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEE--e-CCcEEccccc--------CcCcCCCccc
Confidence 457999999887543232 2 6788999884 5999998874
No 197
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=46.12 E-value=34 Score=18.34 Aligned_cols=23 Identities=26% Similarity=0.115 Sum_probs=12.0
Q ss_pred CccccchhhHHHHHHHHHHHHHH
Q 035703 15 TTTTGVGLGYGIAIAVSILVLIS 37 (139)
Q Consensus 15 ~~~~~~~~~~~i~i~l~~~~~i~ 37 (139)
..++.---.|..+++.+.++++.
T Consensus 10 ~~mTpSL~NFl~SlvaG~vVvv~ 32 (50)
T 3bz1_X 10 LTITPSLKGFFIGLLSGAVVLGL 32 (50)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHHHHHHHH
Confidence 34444445556666666555544
No 198
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=45.86 E-value=11 Score=25.56 Aligned_cols=37 Identities=27% Similarity=0.576 Sum_probs=20.8
Q ss_pred ccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCC
Q 035703 78 PCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSP 124 (139)
Q Consensus 78 ~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v 124 (139)
.|..|-..+...+.+... -++.||.+|+ .|-.|++.+
T Consensus 71 ~C~~C~~~I~~~e~~i~a--~~~~~H~~CF--------~C~~C~~~L 107 (188)
T 1rut_X 71 ACSACGQSIPASELVMRA--QGNVYHLKCF--------TCSTCRNRL 107 (188)
T ss_dssp ECTTTCCEECTTSEEEEE--TTEEECGGGC--------BCTTTCCBC
T ss_pred ccccCCCccccCcEEEEc--CCCEEeCCCC--------eECCCCCCC
Confidence 477776666544433221 4667777663 466666555
No 199
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=45.82 E-value=35 Score=25.28 Aligned_cols=8 Identities=25% Similarity=0.796 Sum_probs=4.1
Q ss_pred HHHHHHHh
Q 035703 105 DCVDEWLR 112 (139)
Q Consensus 105 ~Ci~~wl~ 112 (139)
+-++.|++
T Consensus 266 ~~F~~Wl~ 273 (298)
T 3hb3_B 266 EKYEAWLA 273 (298)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44555553
No 200
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=45.80 E-value=3.4 Score=23.12 Aligned_cols=36 Identities=17% Similarity=0.478 Sum_probs=23.5
Q ss_pred CccccCcccccCCCceeecC--C--CCCcccHHHHHHHHh
Q 035703 77 GPCSICLCDYKPKDSVRCIP--D--CHHCFHADCVDEWLR 112 (139)
Q Consensus 77 ~~C~ICl~~~~~~~~~~~lp--~--C~H~fH~~Ci~~wl~ 112 (139)
..||-|...++..+....+. . |+|.|+..|...|-.
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 46888888877655333333 2 677787777777753
No 201
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=45.79 E-value=11 Score=20.71 Aligned_cols=39 Identities=18% Similarity=0.422 Sum_probs=26.9
Q ss_pred CccccCcccccCCCceeecCCCCCccc--HHHHHHHHhCCCCCcccCCCCC
Q 035703 77 GPCSICLCDYKPKDSVRCIPDCHHCFH--ADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 77 ~~C~ICl~~~~~~~~~~~lp~C~H~fH--~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
..|+-|-+.+..++... .. -|..|| .+|+ .|-.|++++.
T Consensus 3 ~~C~~C~~~I~~~~~~v-~a-~~~~wH~~~~CF--------~C~~C~~~L~ 43 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRV-TY-NNFSWHASTECF--------LCSCCSKCLI 43 (65)
T ss_dssp EECTTTSSEECTTSCEE-EE-TTEEEETTTTTS--------BCTTTCCBCT
T ss_pred CCCcCCCCeeccCceEE-EE-CCCccCCCCCCE--------ECCCCCCcCC
Confidence 35888888887643332 22 578899 8883 5888888875
No 202
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=45.00 E-value=15 Score=20.06 Aligned_cols=28 Identities=18% Similarity=0.476 Sum_probs=15.7
Q ss_pred CCCccccCcccccCCCceeecC--CCCCcc
Q 035703 75 DYGPCSICLCDYKPKDSVRCIP--DCHHCF 102 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp--~C~H~f 102 (139)
+-..|+.|...++..+.....+ .|++.|
T Consensus 9 ~iL~CP~c~~~L~~~~~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 9 EILACPACHAPLEERDAELICTGQDCGLAY 38 (56)
T ss_dssp TSCCCSSSCSCEEEETTEEEECSSSCCCEE
T ss_pred hheeCCCCCCcceecCCEEEcCCcCCCcEE
Confidence 4557999988765432222233 466665
No 203
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=44.75 E-value=4 Score=19.29 Aligned_cols=11 Identities=27% Similarity=0.791 Sum_probs=7.5
Q ss_pred CCCcccCCCCC
Q 035703 115 ATCPLCRSSPA 125 (139)
Q Consensus 115 ~~CP~CR~~v~ 125 (139)
..||+|+..+.
T Consensus 4 ~~CpvCk~q~P 14 (28)
T 2jvx_A 4 FCCPKCQYQAP 14 (28)
T ss_dssp EECTTSSCEES
T ss_pred ccCccccccCc
Confidence 46888877543
No 204
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=44.68 E-value=40 Score=20.89 Aligned_cols=29 Identities=31% Similarity=0.642 Sum_probs=19.2
Q ss_pred CCCCcccHHHH---H---HHHhC-----CCCCcccCCCCC
Q 035703 97 DCHHCFHADCV---D---EWLRM-----SATCPLCRSSPA 125 (139)
Q Consensus 97 ~C~H~fH~~Ci---~---~wl~~-----~~~CP~CR~~v~ 125 (139)
.|+++||..|+ + .-+.. ...||.|.....
T Consensus 7 ~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~~ 46 (140)
T 2ku7_A 7 KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHV 46 (140)
T ss_dssp CCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTSC
T ss_pred cCCCccCCcccccCHHHHHHHhhccccceeeCcccccccc
Confidence 49999999995 2 12222 357999976543
No 205
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=44.42 E-value=5.2 Score=23.08 Aligned_cols=17 Identities=24% Similarity=0.530 Sum_probs=12.1
Q ss_pred HHHhCCCCCcccCCCCC
Q 035703 109 EWLRMSATCPLCRSSPA 125 (139)
Q Consensus 109 ~wl~~~~~CP~CR~~v~ 125 (139)
.|+..--.||.|+.++.
T Consensus 3 ~~LLeiL~CP~ck~~L~ 19 (69)
T 2pk7_A 3 TKLLDILACPICKGPLK 19 (69)
T ss_dssp CCGGGTCCCTTTCCCCE
T ss_pred hHHHhheeCCCCCCcCe
Confidence 44555567999998875
No 206
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=43.51 E-value=30 Score=16.95 Aligned_cols=6 Identities=17% Similarity=0.401 Sum_probs=2.2
Q ss_pred HHHHHH
Q 035703 39 IMLASY 44 (139)
Q Consensus 39 ~~~~~~ 44 (139)
+.+++|
T Consensus 22 V~LI~f 27 (35)
T 2lk9_A 22 VPLIIF 27 (35)
T ss_dssp HHHHHH
T ss_pred chheEE
Confidence 333333
No 207
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=42.78 E-value=36 Score=21.57 Aligned_cols=10 Identities=20% Similarity=0.448 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 035703 27 AIAVSILVLI 36 (139)
Q Consensus 27 ~i~l~~~~~i 36 (139)
.+++++++++
T Consensus 99 ~iii~~iv~i 108 (119)
T 2kog_A 99 MIILGVICAI 108 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 208
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=42.78 E-value=1.5 Score=25.98 Aligned_cols=14 Identities=21% Similarity=0.833 Sum_probs=12.7
Q ss_pred CCCCcccHHHHHHH
Q 035703 97 DCHHCFHADCVDEW 110 (139)
Q Consensus 97 ~C~H~fH~~Ci~~w 110 (139)
.|||.|+..|-..|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 59999999999888
No 209
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=42.19 E-value=42 Score=18.29 Aligned_cols=10 Identities=20% Similarity=0.561 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 035703 36 ISTIMLASYA 45 (139)
Q Consensus 36 i~~~~~~~~~ 45 (139)
+.++.+++|.
T Consensus 26 L~li~~~LwK 35 (54)
T 2knc_A 26 LTILVLAMWK 35 (54)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333344443
No 210
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.18 E-value=18 Score=20.64 Aligned_cols=37 Identities=24% Similarity=0.538 Sum_probs=26.0
Q ss_pred CccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 77 GPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 77 ~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
..|+-|-+.+. ++.+. . -+..||.+|+ .|-.|++++.
T Consensus 16 ~~C~~C~~~I~-~~~v~--a-~~~~wH~~CF--------~C~~C~~~L~ 52 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVS--A-LGKTYHPDCF--------VCAVCRLPFP 52 (81)
T ss_dssp CBCTTTCCBCC-SCCEE--E-TTEEECTTTS--------SCSSSCCCCC
T ss_pred CcCccccCEec-cceEE--E-CCceeCccCC--------ccccCCCCCC
Confidence 36999988877 33332 2 6788998884 4788887765
No 211
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=41.28 E-value=11 Score=25.34 Aligned_cols=45 Identities=13% Similarity=0.230 Sum_probs=24.3
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
+-..|..|-..+.... . .. =|..|+..|...-+ ...|..|...|.
T Consensus 86 ~CF~C~~C~~~L~~~~-f--~~-~g~~yC~~~y~~~f--~~kC~~C~~~I~ 130 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERC-F--SR-GESVYCKDDFFKRF--GTKCAACQLGIP 130 (182)
T ss_dssp STTSCTTTCCCCSSCC-E--EE-TTEEECHHHHHHTT--SCCCTTTCCCCC
T ss_pred ccCccCCCCCccCCCc-e--eE-CCEeeecCcccccc--ccccccCCCccC
Confidence 4456777766665432 1 11 35566666655422 235666666654
No 212
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=41.12 E-value=4.8 Score=23.10 Aligned_cols=17 Identities=18% Similarity=0.186 Sum_probs=12.2
Q ss_pred HHHhCCCCCcccCCCCC
Q 035703 109 EWLRMSATCPLCRSSPA 125 (139)
Q Consensus 109 ~wl~~~~~CP~CR~~v~ 125 (139)
.|+..--.||.|+.++.
T Consensus 5 ~~LLeiL~CP~ck~~L~ 21 (67)
T 2jny_A 5 PQLLEVLACPKDKGPLR 21 (67)
T ss_dssp GGGTCCCBCTTTCCBCE
T ss_pred HHHHHHhCCCCCCCcCe
Confidence 45555567999998775
No 213
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.94 E-value=19 Score=20.37 Aligned_cols=37 Identities=19% Similarity=0.492 Sum_probs=25.6
Q ss_pred CccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 77 GPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 77 ~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
..|.-|-+.+.. +. +.. =+..||.+|+ .|-.|++++.
T Consensus 16 ~~C~~C~~~I~~-~~--v~a-~~~~~H~~CF--------~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQ-GG--VTY-RDQPWHRECL--------VCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCS-CC--EES-SSSEECTTTC--------BCSSSCCBCT
T ss_pred CcCCCCCCEecC-cE--EEE-CCchhhhhhC--------CcccCCCcCC
Confidence 468888888764 32 223 6778888774 4888888774
No 214
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=38.92 E-value=29 Score=21.60 Aligned_cols=50 Identities=10% Similarity=-0.043 Sum_probs=32.5
Q ss_pred CCCccccCcccccC-CCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCCC
Q 035703 75 DYGPCSICLCDYKP-KDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPAT 126 (139)
Q Consensus 75 ~~~~C~ICl~~~~~-~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~~ 126 (139)
+-..|..|-..+.+ +.... .. =|..|+..|...-+..+..|-.|..+|..
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~-~~-~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSY-TK-SGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCE-EE-TTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred hCCCcCCCCCcccccCCeEE-EE-CCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 33567788777652 12222 22 56778888988876654479999888873
No 215
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.23 E-value=20 Score=20.42 Aligned_cols=39 Identities=18% Similarity=0.485 Sum_probs=26.6
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
....|+-|-+.+.. ..+ .. -+..||.+|+ .|..|++++.
T Consensus 14 ~~~~C~~C~~~I~~-~~~--~a-~~~~~H~~CF--------~C~~C~~~L~ 52 (81)
T 2dlo_A 14 TLEKCATCSQPILD-RIL--RA-MGKAYHPGCF--------TCVVCHRGLD 52 (81)
T ss_dssp SCCBCTTTCCBCCS-CCE--EE-TTEEECTTTC--------BCSSSCCBCT
T ss_pred CCCccccCCCeecc-eeE--EE-CCccccHHhc--------CcccCCCccC
Confidence 34568889888773 322 22 5678898774 5888888875
No 216
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=37.25 E-value=27 Score=19.52 Aligned_cols=38 Identities=24% Similarity=0.481 Sum_probs=21.3
Q ss_pred CCCCCCccccCcc-cccCCCceeecCCCCCcccHHHHHHH
Q 035703 72 RTNDYGPCSICLC-DYKPKDSVRCIPDCHHCFHADCVDEW 110 (139)
Q Consensus 72 ~~~~~~~C~ICl~-~~~~~~~~~~lp~C~H~fH~~Ci~~w 110 (139)
...+...|.||+- .|.++..-.-.- |.-.|+..|-..|
T Consensus 5 ~~~d~~~C~iC~KTKFADG~Gh~C~y-Ck~r~CaRCGg~v 43 (62)
T 2a20_A 5 QKGDAPTCGICHKTKFADGCGHNCSY-CQTKFCARCGGRV 43 (62)
T ss_dssp CSSCCCCCSSSSCSCCCSSCCEEBTT-TCCEECTTSEEEE
T ss_pred ccCCcchhhhhccceeccCCCccccc-cCCeeecccCCEe
Confidence 3456778999975 555543332222 5555666654444
No 217
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=36.80 E-value=20 Score=24.85 Aligned_cols=25 Identities=20% Similarity=0.465 Sum_probs=15.2
Q ss_pred eeecCCCCCcccHHHHHHHHhCCCCCcccCCC
Q 035703 92 VRCIPDCHHCFHADCVDEWLRMSATCPLCRSS 123 (139)
Q Consensus 92 ~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~ 123 (139)
..+.+.|||++-. ..-..||.|..+
T Consensus 171 ~~~C~~CG~i~~g-------~~p~~CP~C~~~ 195 (202)
T 1yuz_A 171 FHLCPICGYIHKG-------EDFEKCPICFRP 195 (202)
T ss_dssp EEECSSSCCEEES-------SCCSBCTTTCCB
T ss_pred EEEECCCCCEEcC-------cCCCCCCCCCCC
Confidence 3344458888642 122379999775
No 218
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.61 E-value=22 Score=20.11 Aligned_cols=38 Identities=21% Similarity=0.443 Sum_probs=26.1
Q ss_pred CccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCCC
Q 035703 77 GPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPAT 126 (139)
Q Consensus 77 ~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~~ 126 (139)
..|+-|-+.+.. +.+. . -+..||.+|+ .|-.|++++..
T Consensus 16 ~~C~~C~~~I~~-~~v~--a-~~~~~H~~CF--------~C~~C~~~L~~ 53 (80)
T 1x3h_A 16 PKCGGCNRPVLE-NYLS--A-MDTVWHPECF--------VCGDCFTSFST 53 (80)
T ss_dssp CBCTTTCCBCCS-SCEE--E-TTEEECTTTC--------BCSSSCCBSCS
T ss_pred CccccCCCeecc-eeEE--E-CCCeEecCcC--------ChhhCCCCCCC
Confidence 468888888774 3332 2 5677888773 48888888753
No 219
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=36.23 E-value=26 Score=21.53 Aligned_cols=36 Identities=11% Similarity=0.090 Sum_probs=18.1
Q ss_pred CCCccccCcccccC-CCceeecCCCCCcccHHHHHHHHh
Q 035703 75 DYGPCSICLCDYKP-KDSVRCIPDCHHCFHADCVDEWLR 112 (139)
Q Consensus 75 ~~~~C~ICl~~~~~-~~~~~~lp~C~H~fH~~Ci~~wl~ 112 (139)
+-..|..|-..+.. +.... .. =|..|+..|...-+.
T Consensus 29 ~CF~C~~C~~~L~~~g~~~~-~~-~g~~yC~~~y~~~f~ 65 (114)
T 1j2o_A 29 DCLSCDLCGCRLGEVGRRLY-YK-LGRKLCRRDYLRLGG 65 (114)
T ss_dssp TTCCCSSSCSCCCCSSSCCC-CB-TTBCCCHHHHHHHHT
T ss_pred hcCcccccCCchhcCCCeeE-EE-CCeeechHHHHHHhC
Confidence 44556666666542 21111 11 355666766665544
No 220
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=35.22 E-value=26 Score=21.89 Aligned_cols=27 Identities=15% Similarity=0.384 Sum_probs=11.2
Q ss_pred ccccCcccccCCCceeecCCCCCcccHHH
Q 035703 78 PCSICLCDYKPKDSVRCIPDCHHCFHADC 106 (139)
Q Consensus 78 ~C~ICl~~~~~~~~~~~lp~C~H~fH~~C 106 (139)
.|..|-+.+...+.+.. . -++.||.+|
T Consensus 68 ~C~~C~~~I~~~e~~~~-a-~~~~~H~~C 94 (131)
T 2xjy_A 68 LCASCDKRIRAYEMTMR-V-KDKVYHLEC 94 (131)
T ss_dssp ECTTTCCEECTTSEEEE-E-TTEEEEGGG
T ss_pred ChhhcCCccCccceeEe-e-CCceECccC
Confidence 35555444443332211 1 344555544
No 221
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=35.14 E-value=7.6 Score=25.86 Aligned_cols=22 Identities=27% Similarity=0.532 Sum_probs=14.1
Q ss_pred CCCCcccHHHHHHHHhCCCCCcccCCCC
Q 035703 97 DCHHCFHADCVDEWLRMSATCPLCRSSP 124 (139)
Q Consensus 97 ~C~H~fH~~Ci~~wl~~~~~CP~CR~~v 124 (139)
.|||.|-.. .....||.|..++
T Consensus 137 ~Cg~~~~~~------~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 137 GCGRKFSTL------PPGGVCPDCGSKV 158 (165)
T ss_dssp SSCCEESSC------CGGGBCTTTCCBE
T ss_pred CCCCcccCC------CCCCcCCCCCCcc
Confidence 488887532 1233799998775
No 222
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=34.49 E-value=25 Score=21.82 Aligned_cols=25 Identities=12% Similarity=0.251 Sum_probs=11.6
Q ss_pred CCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 99 HHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 99 ~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
|..|+..|...- -...|..|.++|.
T Consensus 50 g~~yC~~cy~~~--~~~~C~~C~~~I~ 74 (126)
T 2xqn_T 50 DKPVCKPCYVKN--HAVVCQGCHNAID 74 (126)
T ss_dssp TEEEEHHHHHHH--SCCBCTTTCSBCC
T ss_pred CEEechHHhCcC--cCccCcccCCcCC
Confidence 444555554432 2234555555554
No 223
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=32.39 E-value=9.5 Score=32.49 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=0.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHH
Q 035703 18 TGVGLGYGIAIAVSILVLISTIML 41 (139)
Q Consensus 18 ~~~~~~~~i~i~l~~~~~i~~~~~ 41 (139)
.+++.+..++|+++++++++++++
T Consensus 700 ~~l~~~aii~il~~~~~ll~~~ll 723 (880)
T 1q55_A 700 GGFDLPIILVILGSVLALLILFLL 723 (880)
T ss_dssp ------------------------
T ss_pred cCccHHHHHHHHHHHHHHHHHHHH
Confidence 344455555565555555544443
No 224
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=32.10 E-value=9.2 Score=17.58 Aligned_cols=9 Identities=33% Similarity=1.121 Sum_probs=6.3
Q ss_pred CCcccCCCC
Q 035703 116 TCPLCRSSP 124 (139)
Q Consensus 116 ~CP~CR~~v 124 (139)
+||+|.+.+
T Consensus 8 qcpvcqq~m 16 (29)
T 3vhs_A 8 QCPVCQQMM 16 (29)
T ss_dssp ECTTTCCEE
T ss_pred eChHHHHhC
Confidence 588886654
No 225
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=31.12 E-value=88 Score=22.04 Aligned_cols=24 Identities=4% Similarity=-0.211 Sum_probs=10.0
Q ss_pred CCCCCCCccCCCCCCccccchhhH
Q 035703 1 MSTANPPVVASTAATTTTGVGLGY 24 (139)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (139)
|++-++-.-+.++++.+.++..-.
T Consensus 1 m~~w~~~~~~d~~sp~~~~i~~lh 24 (227)
T 1v54_B 1 MAYPMQLGFQDATSPIMEELLHFH 24 (227)
T ss_dssp CCCTTCCSCCCCCSHHHHHHHHHH
T ss_pred CCChhhCCCcCCCChHHHHHHHHH
Confidence 333333333434445555554333
No 226
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=30.37 E-value=5.2 Score=23.02 Aligned_cols=15 Identities=13% Similarity=0.330 Sum_probs=9.9
Q ss_pred HhCCCCCcccCCCCC
Q 035703 111 LRMSATCPLCRSSPA 125 (139)
Q Consensus 111 l~~~~~CP~CR~~v~ 125 (139)
+..--.||.|+.++.
T Consensus 5 LL~iL~CP~ck~~L~ 19 (68)
T 2jr6_A 5 FLDILVCPVTKGRLE 19 (68)
T ss_dssp SSCCCBCSSSCCBCE
T ss_pred HhhheECCCCCCcCe
Confidence 333446899988765
No 227
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=29.95 E-value=24 Score=23.87 Aligned_cols=39 Identities=21% Similarity=0.433 Sum_probs=24.4
Q ss_pred CCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCCCCC
Q 035703 76 YGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSPA 125 (139)
Q Consensus 76 ~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~v~ 125 (139)
...|..|-+.+..++.+. . =+..||.+|+ .|-.|+.++.
T Consensus 115 ~~~C~~C~~~I~~~~~v~--a-~~~~~H~~CF--------~C~~C~~~L~ 153 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKVI--G-AGKSWHKSCF--------RCAKCGKSLE 153 (192)
T ss_dssp CEECTTTSCEECSSSCEE--E-TTEEECTTTC--------BCTTTCCBCC
T ss_pred CCcCCCCCCEecCcEEEe--c-CCCccchhcC--------CccccCCCCC
Confidence 345888887776555443 1 4566777663 4677776664
No 228
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=29.52 E-value=53 Score=24.30 Aligned_cols=19 Identities=16% Similarity=0.252 Sum_probs=7.3
Q ss_pred ccchhhHHHHHHHHHHHHH
Q 035703 18 TGVGLGYGIAIAVSILVLI 36 (139)
Q Consensus 18 ~~~~~~~~i~i~l~~~~~i 36 (139)
.++.-.|+..+++++.+++
T Consensus 307 Pel~~~~gy~~~l~~m~~~ 325 (339)
T 4ev6_A 307 PLANNPQGFWLVMALMVVI 325 (339)
T ss_dssp TTSSCTTHHHHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHHH
Confidence 3333333433444443333
No 229
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=29.40 E-value=33 Score=23.13 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=13.4
Q ss_pred ecCCCCCcccHHHHHHHHhCCCCCcccCCC
Q 035703 94 CIPDCHHCFHADCVDEWLRMSATCPLCRSS 123 (139)
Q Consensus 94 ~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~ 123 (139)
+.+.|||++-. ..-..||.|..+
T Consensus 140 ~C~~CG~i~~~-------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 140 ICPICGYTAVD-------EAPEYCPVCGAP 162 (170)
T ss_dssp ECTTTCCEEES-------CCCSBCTTTCCB
T ss_pred EeCCCCCeeCC-------CCCCCCCCCCCC
Confidence 34457777642 122379999764
No 230
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=29.38 E-value=18 Score=22.69 Aligned_cols=23 Identities=30% Similarity=0.798 Sum_probs=15.9
Q ss_pred CCCCcccHHHHHHHHhCCC-CCcccCCCCC
Q 035703 97 DCHHCFHADCVDEWLRMSA-TCPLCRSSPA 125 (139)
Q Consensus 97 ~C~H~fH~~Ci~~wl~~~~-~CP~CR~~v~ 125 (139)
+|||.|-.. .... .||.|..+..
T Consensus 78 ~CG~~~e~~------~~~~~~CP~Cgs~~~ 101 (119)
T 2kdx_A 78 DCSHVFKPN------ALDYGVCEKCHSKNV 101 (119)
T ss_dssp SSSCEECSC------CSTTCCCSSSSSCCC
T ss_pred CCCCEEeCC------CCCCCcCccccCCCc
Confidence 499988762 2345 7999987743
No 231
>2yev_B Cytochrome C oxidase subunit 2; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}
Probab=32.76 E-value=14 Score=27.81 Aligned_cols=8 Identities=25% Similarity=0.941 Sum_probs=4.8
Q ss_pred CCcccCCC
Q 035703 116 TCPLCRSS 123 (139)
Q Consensus 116 ~CP~CR~~ 123 (139)
.|-.|+..
T Consensus 246 ~Ca~CHg~ 253 (337)
T 2yev_B 246 NCAACHGV 253 (337)
Confidence 47777643
No 232
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=26.51 E-value=5.2 Score=23.02 Aligned_cols=11 Identities=36% Similarity=1.050 Sum_probs=8.2
Q ss_pred CCCcccCCCCC
Q 035703 115 ATCPLCRSSPA 125 (139)
Q Consensus 115 ~~CP~CR~~v~ 125 (139)
-.||.|+.++.
T Consensus 9 L~CP~ck~~L~ 19 (68)
T 2hf1_A 9 LVCPLCKGPLV 19 (68)
T ss_dssp CBCTTTCCBCE
T ss_pred eECCCCCCcCe
Confidence 36888888765
No 233
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=26.42 E-value=66 Score=15.82 Aligned_cols=9 Identities=0% Similarity=0.420 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 035703 25 GIAIAVSIL 33 (139)
Q Consensus 25 ~i~i~l~~~ 33 (139)
.+..+.+++
T Consensus 9 alt~i~gl~ 17 (40)
T 2l9u_A 9 ALTVIAGLV 17 (40)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333444433
No 234
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=25.90 E-value=66 Score=15.61 Aligned_cols=19 Identities=21% Similarity=0.429 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 035703 31 SILVLISTIMLASYACIRV 49 (139)
Q Consensus 31 ~~~~~i~~~~~~~~~~~r~ 49 (139)
+++++..+++-++|..-+.
T Consensus 10 giL~iYgii~T~Ly~R~K~ 28 (33)
T 2hac_A 10 GILFIYGVILTALFLRVKF 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444444445455554443
No 235
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=24.66 E-value=5.6 Score=23.01 Aligned_cols=13 Identities=23% Similarity=0.692 Sum_probs=8.8
Q ss_pred CCCCCcccCCCCC
Q 035703 113 MSATCPLCRSSPA 125 (139)
Q Consensus 113 ~~~~CP~CR~~v~ 125 (139)
.--.||.|+.++.
T Consensus 7 ~iL~CP~ck~~L~ 19 (70)
T 2js4_A 7 DILVCPVCKGRLE 19 (70)
T ss_dssp CCCBCTTTCCBEE
T ss_pred hheECCCCCCcCE
Confidence 3346888888764
No 236
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=24.46 E-value=17 Score=22.55 Aligned_cols=45 Identities=13% Similarity=0.149 Sum_probs=24.8
Q ss_pred cccCcccccCCCceeecCCCCCcccHHHHHHHHh----C----CCCCcccCCC
Q 035703 79 CSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLR----M----SATCPLCRSS 123 (139)
Q Consensus 79 C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~----~----~~~CP~CR~~ 123 (139)
|..|.+....++.+..-..|+..||..|...... . ...||.|+..
T Consensus 62 c~~c~~~~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 62 VDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQE 114 (117)
T ss_dssp BCCHHHHCCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC--
T ss_pred ccccccccccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcCC
Confidence 3334333333334444456999999999764321 1 1359999753
No 237
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=23.63 E-value=4.3 Score=24.22 Aligned_cols=32 Identities=25% Similarity=0.758 Sum_probs=18.9
Q ss_pred cccCcccccC--CCceeecCCCCCcccHHHHHHH
Q 035703 79 CSICLCDYKP--KDSVRCIPDCHHCFHADCVDEW 110 (139)
Q Consensus 79 C~ICl~~~~~--~~~~~~lp~C~H~fH~~Ci~~w 110 (139)
||=|-..+.. +...+.-+.|+|.|+..|-..|
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 6655443321 1222345569999988887776
No 238
>1oqw_A Fimbrial protein; type IV pilin, fiber-forming protein, adhesion, pseudomonas aerugionosa, PAK pilin, cell adhesion; 2.00A {Pseudomonas aeruginosa} SCOP: d.24.1.1
Probab=23.23 E-value=89 Score=19.87 Aligned_cols=19 Identities=26% Similarity=0.630 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 035703 26 IAIAVSILVLISTIMLASY 44 (139)
Q Consensus 26 i~i~l~~~~~i~~~~~~~~ 44 (139)
+.+++.++.++..+.+..|
T Consensus 6 llivi~Ii~il~~ia~p~~ 24 (144)
T 1oqw_A 6 LMIVVAIIGILAAIAIPQY 24 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 239
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.74 E-value=39 Score=19.79 Aligned_cols=34 Identities=18% Similarity=0.390 Sum_probs=20.6
Q ss_pred CCCCCccccCcccccC-CCceeecCCCCCcccHHH
Q 035703 73 TNDYGPCSICLCDYKP-KDSVRCIPDCHHCFHADC 106 (139)
Q Consensus 73 ~~~~~~C~ICl~~~~~-~~~~~~lp~C~H~fH~~C 106 (139)
.+....|+.|.+.|.- .+.-..-+.|.|..+.+|
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~C 56 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDC 56 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTS
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhcccc
Confidence 4567789999998762 111112334777766665
No 240
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=21.90 E-value=25 Score=24.05 Aligned_cols=22 Identities=18% Similarity=0.552 Sum_probs=12.5
Q ss_pred CCCCCcccHHHHHHHHhCCCCCcccCCC
Q 035703 96 PDCHHCFHADCVDEWLRMSATCPLCRSS 123 (139)
Q Consensus 96 p~C~H~fH~~Ci~~wl~~~~~CP~CR~~ 123 (139)
+.|||++-.+ .....||.|..+
T Consensus 159 ~~CG~~~~g~------~~p~~CP~C~~~ 180 (191)
T 1lko_A 159 RNCGYVHEGT------GAPELCPACAHP 180 (191)
T ss_dssp TTTCCEEEEE------ECCSBCTTTCCB
T ss_pred CCCCCEeeCC------CCCCCCCCCcCC
Confidence 3477775421 112279999775
No 241
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=21.73 E-value=48 Score=17.55 Aligned_cols=11 Identities=27% Similarity=0.736 Sum_probs=7.2
Q ss_pred CCCcccCCCCC
Q 035703 115 ATCPLCRSSPA 125 (139)
Q Consensus 115 ~~CP~CR~~v~ 125 (139)
-.||+|--.+.
T Consensus 24 IrCpyCGyrii 34 (48)
T 4ayb_P 24 VRCPYCGYKII 34 (48)
T ss_dssp SCCTTTCCSCE
T ss_pred cccCccCcEEE
Confidence 35888866554
No 242
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=21.49 E-value=23 Score=21.74 Aligned_cols=11 Identities=27% Similarity=0.918 Sum_probs=6.8
Q ss_pred CCCcccCCCCC
Q 035703 115 ATCPLCRSSPA 125 (139)
Q Consensus 115 ~~CP~CR~~v~ 125 (139)
..||+|.+++.
T Consensus 48 ~~CPvCgs~l~ 58 (112)
T 1l8d_A 48 GKCPVCGRELT 58 (112)
T ss_dssp EECTTTCCEEC
T ss_pred CCCCCCCCcCC
Confidence 35777766654
No 243
>3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus}
Probab=21.28 E-value=1e+02 Score=19.88 Aligned_cols=20 Identities=20% Similarity=0.559 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 035703 26 IAIAVSILVLISTIMLASYA 45 (139)
Q Consensus 26 i~i~l~~~~~i~~~~~~~~~ 45 (139)
+.+++.++.++..+.+..|.
T Consensus 6 llvviaIigiLaaia~p~~~ 25 (151)
T 3sok_A 6 LMIVVAIIGILAAFAIPAYN 25 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555554444444443
No 244
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=21.21 E-value=1.1e+02 Score=23.00 Aligned_cols=42 Identities=12% Similarity=0.289 Sum_probs=30.5
Q ss_pred CCCccccCcccccCCCceeecCCCCCcccHHHHHHHHhCCCCCcccCC
Q 035703 75 DYGPCSICLCDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRS 122 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~ 122 (139)
+-+.|+.=+.++-.|.....-|-||-.||.+. ++..|++|.-
T Consensus 261 ~f~iCa~s~tPIY~g~~~v~Cp~cgA~y~~~~------kG~lC~vC~l 302 (320)
T 3mkr_B 261 PFDICAASYRPIYRGKPVEKCPLSGACYSPEF------KGQICKVTTV 302 (320)
T ss_dssp CCCBBTTTCCBCCTTSCCEECTTTCCEECGGG------TTSBCTTTSS
T ss_pred ccceecCCCccccCCCCCccCCCCCCeechhh------CCCCCCCCcC
Confidence 34457777777655666667777999999865 6778999964
No 245
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=20.83 E-value=28 Score=22.69 Aligned_cols=28 Identities=29% Similarity=0.776 Sum_probs=18.2
Q ss_pred CCCccccCcccccCCC-ceeecCCCCCcc
Q 035703 75 DYGPCSICLCDYKPKD-SVRCIPDCHHCF 102 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~~-~~~~lp~C~H~f 102 (139)
.-..||-|-.++...+ ...+.|.|+|-+
T Consensus 26 ~lP~CP~C~seytYeDg~l~vCPeC~hEW 54 (138)
T 2akl_A 26 TLPPCPQCNSEYTYEDGALLVCPECAHEW 54 (138)
T ss_dssp CSCCCTTTCCCCCEECSSSEEETTTTEEE
T ss_pred cCCCCCCCCCcceEecCCeEECCcccccc
Confidence 3456999988876433 334566688865
No 246
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=20.23 E-value=24 Score=20.24 Aligned_cols=10 Identities=30% Similarity=0.956 Sum_probs=8.5
Q ss_pred CCcccCCCCC
Q 035703 116 TCPLCRSSPA 125 (139)
Q Consensus 116 ~CP~CR~~v~ 125 (139)
.||+|.+++.
T Consensus 11 ~CP~Cgkp~~ 20 (68)
T 1lv3_A 11 NCPTCGKTVV 20 (68)
T ss_dssp ECTTTCCEEE
T ss_pred cCCCCCCccc
Confidence 5999999875
No 247
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=20.13 E-value=7.4 Score=29.10 Aligned_cols=43 Identities=21% Similarity=0.399 Sum_probs=25.5
Q ss_pred CCCccccCcccccCC--------CceeecCCCCCcccHHHHHHHHhCCCCCcccCCC
Q 035703 75 DYGPCSICLCDYKPK--------DSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSS 123 (139)
Q Consensus 75 ~~~~C~ICl~~~~~~--------~~~~~lp~C~H~fH~~Ci~~wl~~~~~CP~CR~~ 123 (139)
....|++|-..-..+ +..+ |.+|.-|-.+|-..+..||.|-..
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R------~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLR------YLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEE------EEEETTTCCEEECCTTSCSSSCCC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcE------EEEeCCCCCEEeecCcCCcCCCCC
Confidence 456799996543211 1222 234445555565577789999775
Done!