BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035705
(758 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 72/123 (58%), Gaps = 1/123 (0%)
Query: 506 LLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRG 565
LL GA++ + G+T + LA N + EV+ +++L + K S G LH AA+ G
Sbjct: 23 LLENGADVNASDSDGKTPLHLAAENGHKEVV-KLLLSQGADPNAKDSDGKTPLHLAAENG 81
Query: 566 DFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALA 625
++V L+S+ D NA D+DG TPL LAA++GH V +LL+S GA + ++ T L
Sbjct: 82 HKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLD 141
Query: 626 LAR 628
LAR
Sbjct: 142 LAR 144
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Query: 503 FRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAA 562
+LLL GA+ ++ G+T + LA N + EV+ +++L + K S G LH AA
Sbjct: 53 VKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVV-KLLLSQGADPNAKDSDGKTPLHLAA 111
Query: 563 KRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGA 611
+ G ++V L+S+ D N SD+DG TPL LA + G+ V +LL G
Sbjct: 112 ENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 45/68 (66%)
Query: 560 RAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENAR 619
AA+ G+ D V L+ DVNASD+DG TPL LAA++GH V +LL+S GA + +++
Sbjct: 10 EAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSD 69
Query: 620 NETALALA 627
+T L LA
Sbjct: 70 GKTPLHLA 77
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 60/113 (53%), Gaps = 4/113 (3%)
Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
+G+T +H A + V+LLL+ D + KT P+HLAA G ++++ L+S
Sbjct: 36 DGKTPLHLAAENGHKEVVKLLLSQGADPNA-KDSDGKT---PLHLAAENGHKEVVKLLLS 91
Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAK 424
G + N++ + G+T + A H+E +K L S+GAD + G+ +A+
Sbjct: 92 QGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAR 144
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 300 MLFQHISPNILH-NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAA 358
+L Q PN +G+T +H A + V+LLL+ D + KT P+HLAA
Sbjct: 56 LLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNA-KDSDGKT---PLHLAA 111
Query: 359 RLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGA 407
G ++++ L+S G + N+ + G T + + +EE +K L +G
Sbjct: 112 ENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 60/129 (46%), Gaps = 5/129 (3%)
Query: 357 AARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAG 416
AA G+ ++ L+ G ++N+ + G+T + A H+E +K L S+GAD + G
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 417 QCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLI-EW 475
+ +A + G ++ V + G + ++ +PL + + +K L+ +
Sbjct: 71 KTPLHLAAEN----GHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQG 126
Query: 476 ADVDLDEQD 484
AD + + D
Sbjct: 127 ADPNTSDSD 135
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 15/127 (11%)
Query: 25 AEVSQRLVDAAHVNDVKRANECIGDPFVDVNFVGTVSLRAKKTELVLHDEAAHE--VRVV 82
+E+ +RL++AA + R + + + DVN S KT L L E H+ V+++
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLL-ENGADVN----ASDSDGKTPLHLAAENGHKEVVKLL 56
Query: 83 YEEFKTE-------VTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTAAVRED-HL 134
+ T L LAA G+ +V+ LLS GA+ N K G E+ H
Sbjct: 57 LSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHK 116
Query: 135 EILDLLI 141
E++ LL+
Sbjct: 117 EVVKLLL 123
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 85/341 (24%), Positives = 135/341 (39%), Gaps = 35/341 (10%)
Query: 343 VQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKH-EECLKF 401
V +K + P+H AAR+G +++ L+ N N T AG T I AR H E L
Sbjct: 73 VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL 132
Query: 402 LASEG----------------ADLGLINYA------GQCANSIAKSSRWTL--GFQQAVV 437
L E A G + A N+ K+ L +
Sbjct: 133 LEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNL 192
Query: 438 DSIR----SGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDXXXXXXXXX 493
D ++ G S + ++PL + N V+ + L+++ + +
Sbjct: 193 DIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG-SANAESVQGVTPLHL 251
Query: 494 XXXXXXXXXFRLLLHAGANIKLQNKYGETAITLAELNRNGEV-LEQVILEYALEEGQKGS 552
LLL AN L NK G T + L + + G V + V++++ +
Sbjct: 252 AAQEGHAEMVALLLSKQANGNLGNKSGLTPLHL--VAQEGHVPVADVLIKHGVMVDATTR 309
Query: 553 AGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAK 612
G+ LH A+ G+ LV L+ DVNA GY+PL AA+ GH + LL+ +GA
Sbjct: 310 MGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS 369
Query: 613 CDIENARNETALALARXX--XXXXXXXXVILDELALTLVLD 651
+ ++ T LA+A+ V+ DE + LV D
Sbjct: 370 PNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSD 410
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 104/275 (37%), Gaps = 6/275 (2%)
Query: 353 PIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLI 412
P+H+AAR G ++ + L+ +N++ +T AR H +K L A+ L
Sbjct: 50 PLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLA 109
Query: 413 NYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKL 472
AG IA G + V+ + F+PL + V + L
Sbjct: 110 TTAGHTPLHIAARE----GHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL 165
Query: 473 IEWADVDLDEQDXXXXXXXXXXXXXXXXXXFRLLLHAGANIKLQNKYGETAITLAELNRN 532
+E D + +LLL G + G T + +A
Sbjct: 166 LER-DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQ 224
Query: 533 GEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLM 592
EV + +L+Y + G LH AA+ G ++V L+S+ + N + G TPL
Sbjct: 225 VEV-ARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLH 283
Query: 593 LAAKSGHGSVCQLLISSGAKCDIENARNETALALA 627
L A+ GH V +LI G D T L +A
Sbjct: 284 LVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVA 318
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%)
Query: 558 LHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIEN 617
LH A+ G +V L+ R N S+ TPL +AA++GH V + L+ + AK + +
Sbjct: 18 LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA 77
Query: 618 ARNETAL 624
++T L
Sbjct: 78 KDDQTPL 84
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 91 TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATT-AAVREDHLEILDLLIK 142
T L +A+H GN+ LV+ LL A+VN K GY+ A ++ H +I+ LL+K
Sbjct: 313 TPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK 365
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 70/181 (38%), Gaps = 21/181 (11%)
Query: 87 KTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATT-AAVREDHLEILDLLIKXXX 145
K +T L +A H NL +V+ LL G + + + GY A +++ +E+ L++
Sbjct: 177 KNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG 236
Query: 146 XXXXXXXXXXXTSYL----GQARPAELLM---ATDLIRPQVSVHALVSACFRGFVNVVDT 198
+L G A LL+ A + + + L G V V D
Sbjct: 237 SANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADV 296
Query: 199 LIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRM 258
LIK GV +A R+ A H I +V+ LLQ ++ K ++
Sbjct: 297 LIKHGVMVDATTRMGYTPLHVASHYG-------------NIKLVKFLLQHQADVNAKTKL 343
Query: 259 G 259
G
Sbjct: 344 G 344
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 72/124 (58%), Gaps = 1/124 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
R+L+ GA++ ++K G T + LA + E++E V+L+ + K G+ LH AA+
Sbjct: 19 RILMANGADVNAKDKDGYTPLHLAAREGHLEIVE-VLLKAGADVNAKDKDGYTPLHLAAR 77
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
G ++V L+ DVNA D DGYTPL LAA+ GH + ++L+ +GA + ++ +T
Sbjct: 78 EGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTP 137
Query: 624 LALA 627
LA
Sbjct: 138 FDLA 141
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
+LL AGA++ ++K G T + LA + E++E V+L+ + K G+ LH AA+
Sbjct: 52 EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVE-VLLKAGADVNAKDKDGYTPLHLAAR 110
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLL 606
G ++V L+ DVNA D G TP LA + GH + ++L
Sbjct: 111 EGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%)
Query: 560 RAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENAR 619
AA+ G D V L++ DVNA D DGYTPL LAA+ GH + ++L+ +GA + ++
Sbjct: 8 EAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD 67
Query: 620 NETALALA 627
T L LA
Sbjct: 68 GYTPLHLA 75
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
+G T +H A + VE+LL D V K P+HLAAR G +I+ L+
Sbjct: 34 DGYTPLHLAAREGHLEIVEVLLKAGAD----VNAKDKDGYTPLHLAAREGHLEIVEVLLK 89
Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIA 423
AG ++N++ G T + AR H E ++ L GAD+ + G+ +A
Sbjct: 90 AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLA 141
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 59/128 (46%), Gaps = 10/128 (7%)
Query: 93 LFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA-AVREDHLEILDLLIKXXXXXXXXX 151
L AA AG VR L++ GA+VN K GY A RE HLEI+++L+K
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 152 XXXXXTSYLGQARPAELLMATDLIRPQVSVHA--------LVSACFRGFVNVVDTLIKCG 203
+L AR L + L++ V+A L A G + +V+ L+K G
Sbjct: 66 KDGYTPLHLA-AREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 124
Query: 204 VDANAIDR 211
D NA D+
Sbjct: 125 ADVNAQDK 132
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
+G T +H A + VE+LL D V K P+HLAAR G +I+ L+
Sbjct: 67 DGYTPLHLAAREGHLEIVEVLLKAGAD----VNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFL 402
AG ++N++ G+T + R HE+ + L
Sbjct: 123 AGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%)
Query: 343 VQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFL 402
V K P+HLAAR G +I+ L+ AG ++N++ G T + AR H E ++ L
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 87
Query: 403 ASEGADL 409
GAD+
Sbjct: 88 LKAGADV 94
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 87 KTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA-AVREDHLEILDLLIK 142
K T L LAA G+L +V LL GA+VN K GY A RE HLEI+++L+K
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 87 KTEVTALFLAAHAGNLTLVRKLLSLGANVN-QKLFRGYATTAAVREDHLEILDLLIK 142
K T L LAA G+L +V LL GA+VN Q F A+RE H +I ++L K
Sbjct: 99 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVLQK 155
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 72/124 (58%), Gaps = 1/124 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
R+L+ GA++ ++K G T + LA + E++E V+L+ + K G+ LH AA+
Sbjct: 19 RILMANGADVNAKDKDGYTPLHLAAREGHLEIVE-VLLKAGADVNAKDKDGYTPLHLAAR 77
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
G ++V L+ DVNA D DGYTPL LAA+ GH + ++L+ +GA + ++ +T
Sbjct: 78 EGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTP 137
Query: 624 LALA 627
LA
Sbjct: 138 FDLA 141
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 42/70 (60%)
Query: 558 LHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIEN 617
L AA+ G D V L++ DVNA D DGYTPL LAA+ GH + ++L+ +GA + ++
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 618 ARNETALALA 627
T L LA
Sbjct: 66 KDGYTPLHLA 75
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
+LL AGA++ ++K G T + LA + E++E V+L+ + K G+ LH AA+
Sbjct: 52 EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVE-VLLKAGADVNAKDKDGYTPLHLAAR 110
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLL 606
G ++V L+ DVNA D G TP LA +G+ + ++L
Sbjct: 111 EGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
+G T +H A + VE+LL D V K P+HLAAR G +I+ L+
Sbjct: 34 DGYTPLHLAAREGHLEIVEVLLKAGAD----VNAKDKDGYTPLHLAAREGHLEIVEVLLK 89
Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIA 423
AG ++N++ G T + AR H E ++ L GAD+ + G+ +A
Sbjct: 90 AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLA 141
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 59/128 (46%), Gaps = 10/128 (7%)
Query: 93 LFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA-AVREDHLEILDLLIKXXXXXXXXX 151
L AA AG VR L++ GA+VN K GY A RE HLEI+++L+K
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 152 XXXXXTSYLGQARPAELLMATDLIRPQVSVHA--------LVSACFRGFVNVVDTLIKCG 203
+L AR L + L++ V+A L A G + +V+ L+K G
Sbjct: 66 KDGYTPLHLA-AREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 124
Query: 204 VDANAIDR 211
D NA D+
Sbjct: 125 ADVNAQDK 132
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%)
Query: 343 VQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFL 402
V K P+HLAAR G +I+ L+ AG ++N++ G T + AR H E ++ L
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 87
Query: 403 ASEGADL 409
GAD+
Sbjct: 88 LKAGADV 94
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 87 KTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA-AVREDHLEILDLLIK 142
K T L LAA G+L +V LL GA+VN K GY A RE HLEI+++L+K
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 22/106 (20%)
Query: 187 ACFRGFVNVVDTLIKCGVDANAIDRV------------LLQSSKPALHANFDCNA----- 229
A G + +V+ L+K G D NA D+ L+ + L A D NA
Sbjct: 42 AAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 101
Query: 230 ---LVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDM--DTGEE 270
L A + +V +LL+AG ++ + + G +D+ D G E
Sbjct: 102 YTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNE 147
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 70/123 (56%), Gaps = 1/123 (0%)
Query: 506 LLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRG 565
L+ GA++ + G T + A N + EV+ ++++ + K S G LH AA+ G
Sbjct: 23 LIENGADVNASDSDGRTPLHHAAENGHKEVV-KLLISKGADVNAKDSDGRTPLHHAAENG 81
Query: 566 DFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALA 625
++V L+S+ DVNA D+DG TPL AA++GH V +LLIS GA + ++ T L
Sbjct: 82 HKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLD 141
Query: 626 LAR 628
LAR
Sbjct: 142 LAR 144
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 2/155 (1%)
Query: 457 LMFVTQANDVDALKKLIEWADVDLDEQDXXXXXXXXXXXXXXXXXXFRLLLHAGANIKLQ 516
L+ + + D +K LIE D++ D +LL+ GA++ +
Sbjct: 8 LIEAAENGNKDRVKDLIENG-ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK 66
Query: 517 NKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSR 576
+ G T + A N + EV+ ++++ + K S G LH AA+ G ++V L+S+
Sbjct: 67 DSDGRTPLHHAAENGHKEVV-KLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK 125
Query: 577 CYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGA 611
DVN SD+DG TPL LA + G+ V +LL G
Sbjct: 126 GADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 4/113 (3%)
Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
+GRT +HHA + V+LL++ D V P+H AA G ++++ LIS
Sbjct: 36 DGRTPLHHAAENGHKEVVKLLISKGAD----VNAKDSDGRTPLHHAAENGHKEVVKLLIS 91
Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAK 424
G ++N++ + G T A H+E +K L S+GAD+ + G+ +A+
Sbjct: 92 KGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAR 144
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 41/64 (64%)
Query: 561 AAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARN 620
AA+ G+ D V L+ DVNASD+DG TPL AA++GH V +LLIS GA + +++
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 621 ETAL 624
T L
Sbjct: 71 RTPL 74
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
+GRT +HHA + V+LL++ D V P+H AA G ++++ LIS
Sbjct: 69 DGRTPLHHAAENGHKEVVKLLISKGAD----VNAKDSDGRTPLHHAAENGHKEVVKLLIS 124
Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGA 407
G ++N+ + G T + + +EE +K L +G
Sbjct: 125 KGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 5/129 (3%)
Query: 357 AARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAG 416
AA G+ ++ LI G ++N+ + G T A H+E +K L S+GAD+ + G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 417 QCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLI-EW 475
+ A + G ++ V I G + + ++ +PL + + +K LI +
Sbjct: 71 RTPLHHAAEN----GHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKG 126
Query: 476 ADVDLDEQD 484
ADV+ + D
Sbjct: 127 ADVNTSDSD 135
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 73/124 (58%), Gaps = 1/124 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
R+L+ GA++ ++K G T + LA + E++E V+L+ + K G+ LH AA+
Sbjct: 31 RILMANGADVNAKDKDGYTPLHLAAREGHLEIVE-VLLKAGADVNAKDKDGYTPLHLAAR 89
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
G ++V L+ DVNA D DGYTPL LAA+ GH + ++L+ +GA + ++ +TA
Sbjct: 90 EGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTA 149
Query: 624 LALA 627
++
Sbjct: 150 FDIS 153
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 42/70 (60%)
Query: 558 LHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIEN 617
L AA+ G D V L++ DVNA D DGYTPL LAA+ GH + ++L+ +GA + ++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 77
Query: 618 ARNETALALA 627
T L LA
Sbjct: 78 KDGYTPLHLA 87
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
+G T +H A + VE+LL D V K P+HLAAR G +I+ L+
Sbjct: 46 DGYTPLHLAAREGHLEIVEVLLKAGAD----VNAKDKDGYTPLHLAAREGHLEIVEVLLK 101
Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIA 423
AG ++N++ G T + AR H E ++ L GAD+ + G+ A I+
Sbjct: 102 AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDIS 153
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
+LL AGA++ ++K G T + LA + E++E V+L+ + K G+ LH AA+
Sbjct: 64 EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVE-VLLKAGADVNAKDKDGYTPLHLAAR 122
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLL 606
G ++V L+ DVNA D G T ++ +G+ + ++L
Sbjct: 123 EGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 59/128 (46%), Gaps = 10/128 (7%)
Query: 93 LFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA-AVREDHLEILDLLIKXXXXXXXXX 151
L AA AG VR L++ GA+VN K GY A RE HLEI+++L+K
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 77
Query: 152 XXXXXTSYLGQARPAELLMATDLIRPQVSVHA--------LVSACFRGFVNVVDTLIKCG 203
+L AR L + L++ V+A L A G + +V+ L+K G
Sbjct: 78 KDGYTPLHLA-AREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 136
Query: 204 VDANAIDR 211
D NA D+
Sbjct: 137 ADVNAQDK 144
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%)
Query: 343 VQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFL 402
V K P+HLAAR G +I+ L+ AG ++N++ G T + AR H E ++ L
Sbjct: 40 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 99
Query: 403 ASEGADL 409
GAD+
Sbjct: 100 LKAGADV 106
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
+G T +H A + VE+LL D V K P+HLAAR G +I+ L+
Sbjct: 79 DGYTPLHLAAREGHLEIVEVLLKAGAD----VNAKDKDGYTPLHLAAREGHLEIVEVLLK 134
Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFL 402
AG ++N++ G+TA I +E+ + L
Sbjct: 135 AGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 87 KTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA-AVREDHLEILDLLIK 142
K T L LAA G+L +V LL GA+VN K GY A RE HLEI+++L+K
Sbjct: 78 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 134
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 22/106 (20%)
Query: 187 ACFRGFVNVVDTLIKCGVDANAIDRV------------LLQSSKPALHANFDCNA----- 229
A G + +V+ L+K G D NA D+ L+ + L A D NA
Sbjct: 54 AAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 113
Query: 230 ---LVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWD--MDTGEE 270
L A + +V +LL+AG ++ + + G ++D +D G E
Sbjct: 114 YTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNE 159
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 76.3 bits (186), Expect = 6e-14, Method: Composition-based stats.
Identities = 47/123 (38%), Positives = 69/123 (56%), Gaps = 1/123 (0%)
Query: 506 LLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRG 565
L+ GA++ + G T + A + E+++ +I + A + K S G LH AAK G
Sbjct: 23 LIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGA-DVNAKDSDGRTPLHYAAKEG 81
Query: 566 DFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALA 625
++V L+S+ DVNA D+DG TPL AAK GH + +LLIS GA + ++ T L
Sbjct: 82 HKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLD 141
Query: 626 LAR 628
LAR
Sbjct: 142 LAR 144
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 2/155 (1%)
Query: 457 LMFVTQANDVDALKKLIEWADVDLDEQDXXXXXXXXXXXXXXXXXXFRLLLHAGANIKLQ 516
L+ + + D +K LIE D++ D +LL+ GA++ +
Sbjct: 8 LIEAAENGNKDRVKDLIE-NGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK 66
Query: 517 NKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSR 576
+ G T + A + E+++ +I + A + K S G LH AAK G ++V L+S+
Sbjct: 67 DSDGRTPLHYAAKEGHKEIVKLLISKGA-DVNAKDSDGRTPLHYAAKEGHKEIVKLLISK 125
Query: 577 CYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGA 611
DVN SD+DG TPL LA + G+ + +LL G
Sbjct: 126 GADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 42/70 (60%)
Query: 558 LHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIEN 617
L AA+ G+ D V L+ DVNASD+DG TPL AAK GH + +LLIS GA + ++
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 618 ARNETALALA 627
+ T L A
Sbjct: 68 SDGRTPLHYA 77
Score = 56.2 bits (134), Expect = 7e-08, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 60/113 (53%), Gaps = 4/113 (3%)
Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
+GRT +H+A + V+LL++ D V P+H AA+ G +I++ LIS
Sbjct: 36 DGRTPLHYAAKEGHKEIVKLLISKGAD----VNAKDSDGRTPLHYAAKEGHKEIVKLLIS 91
Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAK 424
G ++N++ + G T A+ H+E +K L S+GAD+ + G+ +A+
Sbjct: 92 KGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAR 144
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
+GRT +H+A + V+LL++ D V P+H AA+ G +I++ LIS
Sbjct: 69 DGRTPLHYAAKEGHKEIVKLLISKGAD----VNAKDSDGRTPLHYAAKEGHKEIVKLLIS 124
Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGA 407
G ++N+ + G T + + +EE +K L +G
Sbjct: 125 KGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 5/129 (3%)
Query: 357 AARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAG 416
AA G+ ++ LI G ++N+ + G T A+ H+E +K L S+GAD+ + G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 417 QCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLI-EW 475
+ A G ++ V I G + + ++ +PL + + + +K LI +
Sbjct: 71 RTPLHYAAKE----GHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKG 126
Query: 476 ADVDLDEQD 484
ADV+ + D
Sbjct: 127 ADVNTSDSD 135
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 72/124 (58%), Gaps = 1/124 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
R+L+ GA++ + +G T + L N + E++E V+L+YA + +G+ LH AA
Sbjct: 31 RILMANGADVNANDWFGITPLHLVVNNGHLEIIE-VLLKYAADVNASDKSGWTPLHLAAY 89
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
RG ++V L+ DVNA D GYTPL LAA+ GH + ++L+ GA + ++ +TA
Sbjct: 90 RGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTA 149
Query: 624 LALA 627
++
Sbjct: 150 FDIS 153
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 313 GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISA 372
G T +H + + +E+LL A D V K+ P+HLAA G +I+ L+
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAAD----VNASDKSGWTPLHLAAYRGHLEIVEVLLKY 102
Query: 373 GCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIA 423
G ++N+ G T + A H E ++ L GAD+ + G+ A I+
Sbjct: 103 GADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Query: 503 FRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAA 562
+LL A++ +K G T + LA + E++E V+L+Y + G+ LH AA
Sbjct: 63 IEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVE-VLLKYGADVNAMDYQGYTPLHLAA 121
Query: 563 KRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLL 606
+ G ++V L+ DVNA D G T ++ +G+ + ++L
Sbjct: 122 EDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 87 KTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTAAVRED-HLEILDLLIK 142
K+ T L LAA+ G+L +V LL GA+VN ++GY ED HLEI+++L+K
Sbjct: 78 KSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLK 134
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%)
Query: 558 LHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIEN 617
L AA+ G D V L++ DVNA+D G TPL L +GH + ++L+ A + +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASD 77
Query: 618 ARNETALALA 627
T L LA
Sbjct: 78 KSGWTPLHLA 87
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 72/181 (39%), Gaps = 42/181 (23%)
Query: 93 LFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATT-AAVREDHLEILDLLIKXXXXXXXXX 151
L AA AG VR L++ GA+VN + G V HLEI+++L+K
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASD 77
Query: 152 XXXXXTSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDANAIDR 211
+L A +RG + +V+ L+K G D NA+D
Sbjct: 78 KSGWTPLHL--------------------------AAYRGHLEIVEVLLKYGADVNAMD- 110
Query: 212 VLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWD--MDTGE 269
Q P LH A + +V +LL+ G ++ + + G ++D +D G
Sbjct: 111 --YQGYTP-LHL---------AAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGN 158
Query: 270 E 270
E
Sbjct: 159 E 159
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 312 NGRTLIHHAILCNNARAVELLLNCAVD-KEFPVQTYSKTELRPIHLAARLGSAKILRRLI 370
+G T +H A + VE+LL D Q Y+ P+HLAA G +I+ L+
Sbjct: 79 SGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYT-----PLHLAAEDGHLEIVEVLL 133
Query: 371 SAGCNINSRTAAGETAAMICARYKHEECLKFL 402
G ++N++ G+TA I +E+ + L
Sbjct: 134 KYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 29/124 (23%)
Query: 90 VTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYAT--TAAVREDHLEILDLLIKXXXXX 147
+T L L + G+L ++ LL A+VN G+ AA R HLEI+++L+K
Sbjct: 48 ITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYR-GHLEIVEVLLK----- 101
Query: 148 XXXXXXXXXTSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDAN 207
Y G P L A G + +V+ L+K G D N
Sbjct: 102 --YGADVNAMDYQGYT-PLHL------------------AAEDGHLEIVEVLLKYGADVN 140
Query: 208 AIDR 211
A D+
Sbjct: 141 AQDK 144
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 74/124 (59%), Gaps = 1/124 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
R+L+ GA++ ++ G T + LA + E++E V+L+ + K S G LH AA+
Sbjct: 31 RILMANGADVNARDFTGWTPLHLAAHFGHLEIVE-VLLKNGADVNAKDSLGVTPLHLAAR 89
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
RG ++V L+ DVNASD+ G+TPL LAAK GH + ++L+ +GA + ++ +TA
Sbjct: 90 RGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTA 149
Query: 624 LALA 627
++
Sbjct: 150 FDIS 153
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
+LL GA++ ++ G T + LA + E++E V+L+ + S GF LH AAK
Sbjct: 64 EVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVE-VLLKNGADVNASDSHGFTPLHLAAK 122
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLL 606
RG ++V L+ DVNA D G T ++ +G+ + ++L
Sbjct: 123 RGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%)
Query: 560 RAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENAR 619
AA+ G D V L++ DVNA D G+TPL LAA GH + ++L+ +GA + +++
Sbjct: 20 EAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSL 79
Query: 620 NETALALA 627
T L LA
Sbjct: 80 GVTPLHLA 87
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 313 GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISA 372
G T +H A + VE+LL D V + P+HLAAR G +I+ L+
Sbjct: 47 GWTPLHLAAHFGHLEIVEVLLKNGAD----VNAKDSLGVTPLHLAARRGHLEIVEVLLKN 102
Query: 373 GCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIA 423
G ++N+ + G T + A+ H E ++ L GAD+ + G+ A I+
Sbjct: 103 GADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDIS 153
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 59/128 (46%), Gaps = 10/128 (7%)
Query: 93 LFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA-AVREDHLEILDLLIKXXXXXXXXX 151
L AA AG VR L++ GA+VN + F G+ A HLEI+++L+K
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD 77
Query: 152 XXXXXTSYLGQARPAELLMATDLIRPQVSVHALVSACF--------RGFVNVVDTLIKCG 203
+L AR L + L++ V+A S F RG + +V+ L+K G
Sbjct: 78 SLGVTPLHLA-ARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNG 136
Query: 204 VDANAIDR 211
D NA D+
Sbjct: 137 ADVNAQDK 144
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 76/181 (41%), Gaps = 38/181 (20%)
Query: 357 AARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAG 416
AAR G +R L++ G ++N+R G T + A + H E ++ L GAD+ + G
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 417 QCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWA 476
+A G + V +++G + +S++ F+PL + ++ ++
Sbjct: 81 VTPLHLAARR----GHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVE------ 130
Query: 477 DVDLDEQDXXXXXXXXXXXXXXXXXXFRLLLHAGANIKLQNKYGETAITLAELNRNGEVL 536
+LL GA++ Q+K+G+TA ++ N N ++
Sbjct: 131 ----------------------------VLLKNGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 537 E 537
E
Sbjct: 163 E 163
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 313 GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISA 372
G T +H A + VE+LL D V P+HLAA+ G +I+ L+
Sbjct: 80 GVTPLHLAARRGHLEIVEVLLKNGAD----VNASDSHGFTPLHLAAKRGHLEIVEVLLKN 135
Query: 373 GCNINSRTAAGETAAMICARYKHEECLKFL 402
G ++N++ G+TA I +E+ + L
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 90 VTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA-AVREDHLEILDLLIK 142
VT L LAA G+L +V LL GA+VN G+ A + HLEI+++L+K
Sbjct: 81 VTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLK 134
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 66/109 (60%), Gaps = 1/109 (0%)
Query: 503 FRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAA 562
+LLL AGA++ ++K G T + LA N + EV+ +++LE + K G LH AA
Sbjct: 18 VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVV-KLLLEAGADVNAKDKNGRTPLHLAA 76
Query: 563 KRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGA 611
+ G ++V L+ DVNA D +G TPL LAA++GH V +LL+ +GA
Sbjct: 77 RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 520 GETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYD 579
G T + LA N + EV+ +++LE + K G LH AA+ G ++V L+ D
Sbjct: 2 GRTPLHLAARNGHLEVV-KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 580 VNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALA 627
VNA D +G TPL LAA++GH V +LL+ +GA + ++ T L LA
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 108
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 4/107 (3%)
Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
NGRT +H A + V+LLL D V K P+HLAAR G ++++ L+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD----VNAKDKNGRTPLHLAARNGHLEVVKLLLE 56
Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQC 418
AG ++N++ G T + AR H E +K L GAD+ + G+
Sbjct: 57 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT 103
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
NGRT +H A + V+LLL D V K P+HLAAR G ++++ L+
Sbjct: 34 NGRTPLHLAARNGHLEVVKLLLEAGAD----VNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGA 407
AG ++N++ G T + AR H E +K L GA
Sbjct: 90 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 63/160 (39%), Gaps = 40/160 (25%)
Query: 91 TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA-AVREDHLEILDLLIKXXXXXXX 149
T L LAA G+L +V+ LL GA+VN K G A R HLE++ LL++
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 150 XXXXXXXTSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDANAI 209
+L A G + VV L++ G D NA
Sbjct: 64 KDKNGRTPLHL--------------------------AARNGHLEVVKLLLEAGADVNAK 97
Query: 210 DRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAG 249
D+ + + LH A + + VV+LLL+AG
Sbjct: 98 DK----NGRTPLHL---------AARNGHLEVVKLLLEAG 124
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 586 DGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALA 627
+G TPL LAA++GH V +LL+ +GA + ++ T L LA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 42
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 13/73 (17%)
Query: 187 ACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLL 246
A G + VV L++ G D NA D+ + + LH A + + VV+LLL
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKDK----NGRTPLHL---------AARNGHLEVVKLLL 55
Query: 247 QAGVKMDIKVRMG 259
+AG ++ K + G
Sbjct: 56 EAGADVNAKDKNG 68
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 13/73 (17%)
Query: 187 ACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLL 246
A G + VV L++ G D NA D+ + + LH A + + VV+LLL
Sbjct: 42 AARNGHLEVVKLLLEAGADVNAKDK----NGRTPLHL---------AARNGHLEVVKLLL 88
Query: 247 QAGVKMDIKVRMG 259
+AG ++ K + G
Sbjct: 89 EAGADVNAKDKNG 101
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 71.6 bits (174), Expect = 2e-12, Method: Composition-based stats.
Identities = 44/123 (35%), Positives = 68/123 (55%), Gaps = 1/123 (0%)
Query: 506 LLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRG 565
LL GA+ + G T + A N + E++ +++L + K S G LH AA+ G
Sbjct: 23 LLENGADPNASDSDGRTPLHYAAENGHKEIV-KLLLSKGADPNAKDSDGRTPLHYAAENG 81
Query: 566 DFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALA 625
++V L+S+ D NA D+DG TPL AA++GH + +LL+S GA + ++ T L
Sbjct: 82 HKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLD 141
Query: 626 LAR 628
LAR
Sbjct: 142 LAR 144
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 37/108 (34%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
+LLL GA+ ++ G T + A N + E++ +++L + K S G LH AA+
Sbjct: 54 KLLLSKGADPNAKDSDGRTPLHYAAENGHKEIV-KLLLSKGADPNAKDSDGRTPLHYAAE 112
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGA 611
G ++V L+S+ D N SD+DG TPL LA + G+ + +LL G
Sbjct: 113 NGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 42/70 (60%)
Query: 558 LHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIEN 617
L AA+ G+ D V L+ D NASD+DG TPL AA++GH + +LL+S GA + ++
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 618 ARNETALALA 627
+ T L A
Sbjct: 68 SDGRTPLHYA 77
Score = 49.3 bits (116), Expect = 8e-06, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
+GRT +H+A + V+LLL+ D P+H AA G +I++ L+S
Sbjct: 36 DGRTPLHYAAENGHKEIVKLLLSKGADP----NAKDSDGRTPLHYAAENGHKEIVKLLLS 91
Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGAD 408
G + N++ + G T A H+E +K L S+GAD
Sbjct: 92 KGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGAD 128
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
+GRT +H+A + V+LLL+ D P+H AA G +I++ L+S
Sbjct: 69 DGRTPLHYAAENGHKEIVKLLLSKGADP----NAKDSDGRTPLHYAAENGHKEIVKLLLS 124
Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGA 407
G + N+ + G T + + +EE +K L +G
Sbjct: 125 KGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 357 AARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGAD 408
AA G+ ++ L+ G + N+ + G T A H+E +K L S+GAD
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGAD 62
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 71/124 (57%), Gaps = 1/124 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
R+L+ GA++ ++ YG+T + LA + E++E V+L+ + +G LH AAK
Sbjct: 31 RILMANGADVNAEDTYGDTPLHLAARVGHLEIVE-VLLKNGADVNALDFSGSTPLHLAAK 89
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
RG ++V L+ DVNA D G TPL LAA +GH + ++L+ GA + ++ +TA
Sbjct: 90 RGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTA 149
Query: 624 LALA 627
++
Sbjct: 150 FDIS 153
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%)
Query: 558 LHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIEN 617
L AA+ G D V L++ DVNA D G TPL LAA+ GH + ++L+ +GA + +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 618 ARNETALALA 627
T L LA
Sbjct: 78 FSGSTPLHLA 87
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 313 GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISA 372
G T +H A + VE+LL D V + P+HLAA+ G +I+ L+
Sbjct: 47 GDTPLHLAARVGHLEIVEVLLKNGAD----VNALDFSGSTPLHLAAKRGHLEIVEVLLKY 102
Query: 373 GCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIA 423
G ++N+ G T + A H E ++ L GAD+ + G+ A I+
Sbjct: 103 GADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 344 QTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLA 403
TY T P+HLAAR+G +I+ L+ G ++N+ +G T + A+ H E ++ L
Sbjct: 44 DTYGDT---PLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLL 100
Query: 404 SEGADL 409
GAD+
Sbjct: 101 KYGADV 106
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/181 (19%), Positives = 77/181 (42%), Gaps = 38/181 (20%)
Query: 357 AARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAG 416
AAR G +R L++ G ++N+ G+T + AR H E ++ L GAD+ ++++G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 417 QCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWA 476
+A + R L + + ++ G + + + +PL ++ ++ L+++
Sbjct: 81 STPLHLA-AKRGHLEIVEVL---LKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKY- 135
Query: 477 DVDLDEQDXXXXXXXXXXXXXXXXXXFRLLLHAGANIKLQNKYGETAITLAELNRNGEVL 536
GA++ Q+K+G+TA ++ N N ++
Sbjct: 136 ---------------------------------GADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 537 E 537
E
Sbjct: 163 E 163
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
+LL GA++ + G T + LA + E++E V+L+Y + + G LH AA
Sbjct: 64 EVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVE-VLLKYGADVNADDTIGSTPLHLAAD 122
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLL 606
G ++V L+ DVNA D G T ++ +G+ + ++L
Sbjct: 123 TGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 72/181 (39%), Gaps = 42/181 (23%)
Query: 93 LFLAAHAGNLTLVRKLLSLGANVN-QKLFRGYATTAAVREDHLEILDLLIKXXXXXXXXX 151
L AA AG VR L++ GA+VN + + A R HLEI+++L+K
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 152 XXXXXTSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDANAIDR 211
+L A RG + +V+ L+K G D NA D
Sbjct: 78 FSGSTPLHL--------------------------AAKRGHLEIVEVLLKYGADVNADDT 111
Query: 212 VLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWD--MDTGE 269
+ S P LH D + +V +LL+ G ++ + + G ++D +D G
Sbjct: 112 I---GSTP-LHLAADTG---------HLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGN 158
Query: 270 E 270
E
Sbjct: 159 E 159
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 27/122 (22%)
Query: 91 TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATT-AAVREDHLEILDLLIKXXXXXXX 149
T L LAA G+L +V LL GA+VN F G A + HLEI+++L+K
Sbjct: 49 TPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLK------- 101
Query: 150 XXXXXXXTSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDANAI 209
Y + + +T L A G + +V+ L+K G D NA
Sbjct: 102 ---------YGADVNADDTIGST----------PLHLAADTGHLEIVEVLLKYGADVNAQ 142
Query: 210 DR 211
D+
Sbjct: 143 DK 144
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
+G T +H A + VE+LL D V P+HLAA G +I+ L+
Sbjct: 79 SGSTPLHLAAKRGHLEIVEVLLKYGAD----VNADDTIGSTPLHLAADTGHLEIVEVLLK 134
Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFL 402
G ++N++ G+TA I +E+ + L
Sbjct: 135 YGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 69/124 (55%), Gaps = 1/124 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
R+L+ GA++ + G T + LA + E++E V+L++ + + + G+ LH AA
Sbjct: 31 RILMANGADVNAHDDQGSTPLHLAAWIGHPEIVE-VLLKHGADVNARDTDGWTPLHLAAD 89
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
G ++V L+ DVNA DA G TPL LAA GH + ++L+ GA + ++ +TA
Sbjct: 90 NGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTA 149
Query: 624 LALA 627
++
Sbjct: 150 FDIS 153
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
+LL GA++ ++ G T + LA N + E++E V+L+Y + + + G LH AA
Sbjct: 64 EVLLKHGADVNARDTDGWTPLHLAADNGHLEIVE-VLLKYGADVNAQDAYGLTPLHLAAD 122
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLL 606
RG ++V L+ DVNA D G T ++ +G+ + ++L
Sbjct: 123 RGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 313 GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISA 372
G T +H A + VE+LL D V P+HLAA G +I+ L+
Sbjct: 47 GSTPLHLAAWIGHPEIVEVLLKHGAD----VNARDTDGWTPLHLAADNGHLEIVEVLLKY 102
Query: 373 GCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIA 423
G ++N++ A G T + A H E ++ L GAD+ + G+ A I+
Sbjct: 103 GADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 153
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 36/68 (52%)
Query: 560 RAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENAR 619
AA+ G D V L++ DVNA D G TPL LAA GH + ++L+ GA + +
Sbjct: 20 EAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTD 79
Query: 620 NETALALA 627
T L LA
Sbjct: 80 GWTPLHLA 87
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
+G T +H A + VE+LL D V L P+HLAA G +I+ L+
Sbjct: 79 DGWTPLHLAADNGHLEIVEVLLKYGAD----VNAQDAYGLTPLHLAADRGHLEIVEVLLK 134
Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFL 402
G ++N++ G+TA I +E+ + L
Sbjct: 135 HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/181 (19%), Positives = 68/181 (37%), Gaps = 38/181 (20%)
Query: 357 AARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAG 416
AAR G +R L++ G ++N+ G T + A H E ++ L GAD
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGAD-------- 72
Query: 417 QCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWA 476
+ + + ++PL ++ ++ L+++
Sbjct: 73 -----------------------------VNARDTDGWTPLHLAADNGHLEIVEVLLKYG 103
Query: 477 DVDLDEQDXXXXXXXXXXXXXXXXXXFRLLLHAGANIKLQNKYGETAITLAELNRNGEVL 536
D++ QD +LL GA++ Q+K+G+TA ++ N N ++
Sbjct: 104 -ADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 537 E 537
E
Sbjct: 163 E 163
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 48/122 (39%), Gaps = 27/122 (22%)
Query: 91 TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA-AVREDHLEILDLLIKXXXXXXX 149
T L LAA G+ +V LL GA+VN + G+ A HLEI+++L+K
Sbjct: 49 TPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNA 108
Query: 150 XXXXXXXTSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDANAI 209
+L A RG + +V+ L+K G D NA
Sbjct: 109 QDAYGLTPLHL--------------------------AADRGHLEIVEVLLKHGADVNAQ 142
Query: 210 DR 211
D+
Sbjct: 143 DK 144
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 68/124 (54%), Gaps = 1/124 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
R+L+ GA++ + G T + LA N + E++E V+L+ + G LH AA
Sbjct: 31 RILMANGADVNATDNDGYTPLHLAASNGHLEIVE-VLLKNGADVNASDLTGITPLHLAAA 89
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
G ++V L+ DVNA D DG+TPL LAAK GH + ++L+ GA + ++ +TA
Sbjct: 90 TGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTA 149
Query: 624 LALA 627
++
Sbjct: 150 FDIS 153
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%)
Query: 560 RAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENAR 619
AA+ G D V L++ DVNA+D DGYTPL LAA +GH + ++L+ +GA + +
Sbjct: 20 EAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLT 79
Query: 620 NETALALA 627
T L LA
Sbjct: 80 GITPLHLA 87
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
+G T +H A + VE+LL D V T + P+HLAA G +I+ L+
Sbjct: 46 DGYTPLHLAASNGHLEIVEVLLKNGAD----VNASDLTGITPLHLAAATGHLEIVEVLLK 101
Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIA 423
G ++N+ G T + A+Y H E ++ L GAD+ + G+ A I+
Sbjct: 102 HGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 153
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
+LL GA++ + G T + LA + E++E V+L++ + + G LH AAK
Sbjct: 64 EVLLKNGADVNASDLTGITPLHLAAATGHLEIVE-VLLKHGADVNAYDNDGHTPLHLAAK 122
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLL 606
G ++V L+ DVNA D G T ++ +G+ + ++L
Sbjct: 123 YGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 313 GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISA 372
G T +H A + VE+LL D V Y P+HLAA+ G +I+ L+
Sbjct: 80 GITPLHLAAATGHLEIVEVLLKHGAD----VNAYDNDGHTPLHLAAKYGHLEIVEVLLKH 135
Query: 373 GCNINSRTAAGETAAMICARYKHEECLKFL 402
G ++N++ G+TA I +E+ + L
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 55/128 (42%), Gaps = 10/128 (7%)
Query: 93 LFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA-AVREDHLEILDLLIKXXXXXXXXX 151
L AA AG VR L++ GA+VN GY A HLEI+++L+K
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD 77
Query: 152 XXXXXTSYLGQARPAELLMATDLIRPQVSVHA--------LVSACFRGFVNVVDTLIKCG 203
+L A L + L++ V+A L A G + +V+ L+K G
Sbjct: 78 LTGITPLHLAAAT-GHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHG 136
Query: 204 VDANAIDR 211
D NA D+
Sbjct: 137 ADVNAQDK 144
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 88 TEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA-AVREDHLEILDLLIK 142
T +T L LAA G+L +V LL GA+VN G+ A + HLEI+++L+K
Sbjct: 79 TGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLK 134
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 69/124 (55%), Gaps = 1/124 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
R+L+ GA++ + G T + LA + E++E V+L+ + S G LH AA
Sbjct: 31 RILMANGADVNASDHVGWTPLHLAAYFGHLEIVE-VLLKNGADVNADDSLGVTPLHLAAD 89
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
RG ++V L+ DVNA+D +G+TPL LAA GH + ++L+ GA + ++ +TA
Sbjct: 90 RGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTA 149
Query: 624 LALA 627
++
Sbjct: 150 FDIS 153
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%)
Query: 560 RAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENAR 619
AA+ G D V L++ DVNASD G+TPL LAA GH + ++L+ +GA + +++
Sbjct: 20 EAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSL 79
Query: 620 NETALALA 627
T L LA
Sbjct: 80 GVTPLHLA 87
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 4/113 (3%)
Query: 311 HNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLI 370
H G T +H A + VE+LL D V + P+HLAA G +++ L+
Sbjct: 45 HVGWTPLHLAAYFGHLEIVEVLLKNGAD----VNADDSLGVTPLHLAADRGHLEVVEVLL 100
Query: 371 SAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIA 423
G ++N+ G T + A H E ++ L GAD+ + G+ A I+
Sbjct: 101 KNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 153
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
+LL GA++ + G T + LA + EV+E V+L+ + GF LH AA
Sbjct: 64 EVLLKNGADVNADDSLGVTPLHLAADRGHLEVVE-VLLKNGADVNANDHNGFTPLHLAAN 122
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLL 606
G ++V L+ DVNA D G T ++ +G+ + ++L
Sbjct: 123 IGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 313 GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISA 372
G T +H A + VE+LL D V P+HLAA +G +I+ L+
Sbjct: 80 GVTPLHLAADRGHLEVVEVLLKNGAD----VNANDHNGFTPLHLAANIGHLEIVEVLLKH 135
Query: 373 GCNINSRTAAGETAAMICARYKHEECLKFL 402
G ++N++ G+TA I +E+ + L
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 73/181 (40%), Gaps = 42/181 (23%)
Query: 93 LFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA-AVREDHLEILDLLIKXXXXXXXXX 151
L AA AG VR L++ GA+VN G+ A HLEI+++L+K
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGAD----- 72
Query: 152 XXXXXTSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDANAIDR 211
+ A D + V L A RG + VV+ L+K G D NA D
Sbjct: 73 -----------------VNADD----SLGVTPLHLAADRGHLEVVEVLLKNGADVNAND- 110
Query: 212 VLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWD--MDTGE 269
H F L + + +V +LL+ G ++ + + G ++D +D G
Sbjct: 111 ----------HNGFTPLHLAANI--GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 158
Query: 270 E 270
E
Sbjct: 159 E 159
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 90 VTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA-AVREDHLEILDLLIK 142
VT L LAA G+L +V LL GA+VN G+ A HLEI+++L+K
Sbjct: 81 VTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLK 134
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 91 TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA-AVREDHLEILDLLIK 142
T L LAA+ G+L +V LL GA+VN G A HLE++++L+K
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLK 101
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 71/124 (57%), Gaps = 1/124 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
R+L+ GA++ ++ G+T + LA + + E++E V+L++ + G LH AA
Sbjct: 31 RILMANGADVNAEDDSGKTPLHLAAIKGHLEIVE-VLLKHGADVNAADKMGDTPLHLAAL 89
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
G ++V L+ DVNA+D G+TPL LAA +GH + ++L+ GA + ++ +TA
Sbjct: 90 YGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTA 149
Query: 624 LALA 627
++
Sbjct: 150 FDIS 153
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
+LL GA++ +K G+T + LA L + E++E V+L+ + + GF LH AA
Sbjct: 64 EVLLKHGADVNAADKMGDTPLHLAALYGHLEIVE-VLLKNGADVNATDTYGFTPLHLAAD 122
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLL 606
G ++V L+ DVNA D G T ++ +G+ + ++L
Sbjct: 123 AGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%)
Query: 558 LHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIEN 617
L AA+ G D V L++ DVNA D G TPL LAA GH + ++L+ GA + +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD 77
Query: 618 ARNETALALA 627
+T L LA
Sbjct: 78 KMGDTPLHLA 87
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
+G+T +H A + + VE+LL D V K P+HLAA G +I+ L+
Sbjct: 46 SGKTPLHLAAIKGHLEIVEVLLKHGAD----VNAADKMGDTPLHLAALYGHLEIVEVLLK 101
Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIA 423
G ++N+ G T + A H E ++ L GAD+ + G+ A I+
Sbjct: 102 NGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/181 (20%), Positives = 76/181 (41%), Gaps = 38/181 (20%)
Query: 357 AARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAG 416
AAR G +R L++ G ++N+ +G+T + A H E ++ L GAD+ + G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
Query: 417 QCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWA 476
+A G + V +++G + +++ F+PL A ++ ++ L+++
Sbjct: 81 DTPLHLA----ALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKY- 135
Query: 477 DVDLDEQDXXXXXXXXXXXXXXXXXXFRLLLHAGANIKLQNKYGETAITLAELNRNGEVL 536
GA++ Q+K+G+TA ++ N N ++
Sbjct: 136 ---------------------------------GADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 537 E 537
E
Sbjct: 163 E 163
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 313 GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISA 372
G T +H A L + VE+LL D TY T P+HLAA G +I+ L+
Sbjct: 80 GDTPLHLAALYGHLEIVEVLLKNGADVN-ATDTYGFT---PLHLAADAGHLEIVEVLLKY 135
Query: 373 GCNINSRTAAGETAAMICARYKHEECLKFL 402
G ++N++ G+TA I +E+ + L
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 91 TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATT-AAVREDHLEILDLLIK 142
T L LAA G+L +V LL GA+VN G+ A HLEI+++L+K
Sbjct: 82 TPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLK 134
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 59/143 (41%), Gaps = 36/143 (25%)
Query: 78 EVRV-------VYEEFKTEVTALFLAAHAGNLTLVRKLLSLGANVN--QKLFRGYATTAA 128
EVR+ V E + T L LAA G+L +V LL GA+VN K+ AA
Sbjct: 29 EVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAA 88
Query: 129 VREDHLEILDLLIKXXXXXXXXXXXXXXTSYLGQARPAELLMATDLIRPQVSVHALVSAC 188
+ HLEI+++L+K + ATD L A
Sbjct: 89 LY-GHLEIVEVLLKNGAD----------------------VNATD----TYGFTPLHLAA 121
Query: 189 FRGFVNVVDTLIKCGVDANAIDR 211
G + +V+ L+K G D NA D+
Sbjct: 122 DAGHLEIVEVLLKYGADVNAQDK 144
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 22/106 (20%)
Query: 187 ACFRGFVNVVDTLIKCGVDANAIDRV------------LLQSSKPALHANFDCNA----- 229
A +G + +V+ L+K G D NA D++ L+ + L D NA
Sbjct: 54 AAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYG 113
Query: 230 ---LVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWD--MDTGEE 270
L A + + +V +LL+ G ++ + + G ++D +D G E
Sbjct: 114 FTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNE 159
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 70/124 (56%), Gaps = 1/124 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
R+L+ GA++ + G T + LA + + E++E V+L++ + G+ LH AA
Sbjct: 31 RILMANGADVNAADNTGTTPLHLAAYSGHLEIVE-VLLKHGADVDASDVFGYTPLHLAAY 89
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
G ++V L+ DVNA D+DG TPL LAAK G+ + ++L+ GA + ++ +TA
Sbjct: 90 WGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTA 149
Query: 624 LALA 627
++
Sbjct: 150 FDIS 153
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 39/70 (55%)
Query: 558 LHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIEN 617
L AA+ G D V L++ DVNA+D G TPL LAA SGH + ++L+ GA D +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASD 77
Query: 618 ARNETALALA 627
T L LA
Sbjct: 78 VFGYTPLHLA 87
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 313 GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISA 372
G T +H A + VE+LL D V P+HLAA G +I+ L+
Sbjct: 47 GTTPLHLAAYSGHLEIVEVLLKHGAD----VDASDVFGYTPLHLAAYWGHLEIVEVLLKN 102
Query: 373 GCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIA 423
G ++N+ + G T + A++ + E ++ L GAD+ + G+ A I+
Sbjct: 103 GADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDIS 153
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
+LL GA++ + +G T + LA + E++E V+L+ + S G LH AAK
Sbjct: 64 EVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVE-VLLKNGADVNAMDSDGMTPLHLAAK 122
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLL 606
G ++V L+ DVNA D G T ++ +G+ + ++L
Sbjct: 123 WGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 313 GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISA 372
G T +H A + VE+LL D V + P+HLAA+ G +I+ L+
Sbjct: 80 GYTPLHLAAYWGHLEIVEVLLKNGAD----VNAMDSDGMTPLHLAAKWGYLEIVEVLLKH 135
Query: 373 GCNINSRTAAGETAAMICARYKHEECLKFL 402
G ++N++ G+TA I +E+ + L
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 11/147 (7%)
Query: 313 GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISA 372
GR L+ A + L+ N A V T P+HLAA G +I+ L+
Sbjct: 15 GRKLLEAARAGQDDEVRILMANGA-----DVNAADNTGTTPLHLAAYSGHLEIVEVLLKH 69
Query: 373 GCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGF 432
G ++++ G T + A + H E ++ L GAD+ ++ G +A ++W G+
Sbjct: 70 GADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLA--AKW--GY 125
Query: 433 QQAVVDSIRSGNIIQSSNASRFSPLMF 459
+ V ++ G + + + +F F
Sbjct: 126 LEIVEVLLKHGADVNAQD--KFGKTAF 150
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 27/126 (21%)
Query: 87 KTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATT-AAVREDHLEILDLLIKXXX 145
T T L LAA++G+L +V LL GA+V+ GY A HLEI+++L+K
Sbjct: 45 NTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGA 104
Query: 146 XXXXXXXXXXXTSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVD 205
M +D + P L A G++ +V+ L+K G D
Sbjct: 105 DVNA--------------------MDSDGMTP------LHLAAKWGYLEIVEVLLKHGAD 138
Query: 206 ANAIDR 211
NA D+
Sbjct: 139 VNAQDK 144
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 73/183 (39%), Gaps = 46/183 (25%)
Query: 93 LFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKXXXXXXX 149
L AA AG VR L++ GA+VN G TT A HLEI+++L+K
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNTG--TTPLHLAAYSGHLEIVEVLLKHGADVD- 74
Query: 150 XXXXXXXTSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDANAI 209
A+D+ L A + G + +V+ L+K G D NA+
Sbjct: 75 ---------------------ASDVF----GYTPLHLAAYWGHLEIVEVLLKNGADVNAM 109
Query: 210 DRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWD--MDT 267
D LH A + +V +LL+ G ++ + + G ++D +D
Sbjct: 110 D----SDGMTPLHL---------AAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDN 156
Query: 268 GEE 270
G E
Sbjct: 157 GNE 159
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 68/124 (54%), Gaps = 1/124 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
R+L+ GA++ + G T + LA + E++E V+L+Y + + G LH AA
Sbjct: 31 RILMANGADVNATDWLGHTPLHLAAKTGHLEIVE-VLLKYGADVNAWDNYGATPLHLAAD 89
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
G ++V L+ DVNA D +G+TPL LAA GH + ++L+ GA + ++ +TA
Sbjct: 90 NGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTA 149
Query: 624 LALA 627
++
Sbjct: 150 FDIS 153
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
+LL GA++ + YG T + LA N + E++E V+L++ + K GF LH AA
Sbjct: 64 EVLLKYGADVNAWDNYGATPLHLAADNGHLEIVE-VLLKHGADVNAKDYEGFTPLHLAAY 122
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLL 606
G ++V L+ DVNA D G T ++ +G+ + ++L
Sbjct: 123 DGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%)
Query: 560 RAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENAR 619
AA+ G D V L++ DVNA+D G+TPL LAAK+GH + ++L+ GA + +
Sbjct: 20 EAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNY 79
Query: 620 NETALALA 627
T L LA
Sbjct: 80 GATPLHLA 87
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 313 GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISA 372
G T +H A + VE+LL D V + P+HLAA G +I+ L+
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYGAD----VNAWDNYGATPLHLAADNGHLEIVEVLLKH 102
Query: 373 GCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIA 423
G ++N++ G T + A H E ++ L GAD+ + G+ A I+
Sbjct: 103 GADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 73/181 (40%), Gaps = 38/181 (20%)
Query: 357 AARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAG 416
AAR G +R L++ G ++N+ G T + A+ H E ++ L GAD+ + G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 417 QCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWA 476
+A + G + V ++ G + + + F+PL D +++E
Sbjct: 81 ATPLHLAADN----GHLEIVEVLLKHGADVNAKDYEGFTPLHLAA----YDGHLEIVE-- 130
Query: 477 DVDLDEQDXXXXXXXXXXXXXXXXXXFRLLLHAGANIKLQNKYGETAITLAELNRNGEVL 536
+LL GA++ Q+K+G+TA ++ N N ++
Sbjct: 131 ----------------------------VLLKYGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 537 E 537
E
Sbjct: 163 E 163
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 91 TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA-AVREDHLEILDLLIK 142
T L LAA G+L +V LL GA+VN K + G+ A + HLEI+++L+K
Sbjct: 82 TPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLK 134
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 10/128 (7%)
Query: 93 LFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA-AVREDHLEILDLLIKXXXXXXXXX 151
L AA AG VR L++ GA+VN + G+ A + HLEI+++L+K
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWD 77
Query: 152 XXXXXTSYLGQARPAELLMATDLIRPQVSVHA--------LVSACFRGFVNVVDTLIKCG 203
+L A L + L++ V+A L A + G + +V+ L+K G
Sbjct: 78 NYGATPLHLA-ADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYG 136
Query: 204 VDANAIDR 211
D NA D+
Sbjct: 137 ADVNAQDK 144
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 313 GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISA 372
G T +H A + VE+LL D V P+HLAA G +I+ L+
Sbjct: 80 GATPLHLAADNGHLEIVEVLLKHGAD----VNAKDYEGFTPLHLAAYDGHLEIVEVLLKY 135
Query: 373 GCNINSRTAAGETAAMICARYKHEECLKFL 402
G ++N++ G+TA I +E+ + L
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 65/121 (53%), Gaps = 1/121 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
R+L+ GA++ + G T + LA N E++E V+L+ + SAG LH AA
Sbjct: 23 RILMANGADVNATDDNGLTPLHLAAANGQLEIVE-VLLKNGADVNASDSAGITPLHLAAY 81
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
G ++V L+ DVNA D G+TPL LAA SG + ++L+ GA + ++A TA
Sbjct: 82 DGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTA 141
Query: 624 L 624
Sbjct: 142 F 142
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
+LL GA++ + G T + LA + + E++E V+L++ + AG+ LH AA
Sbjct: 56 EVLLKNGADVNASDSAGITPLHLAAYDGHLEIVE-VLLKHGADVNAYDRAGWTPLHLAAL 114
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLL 606
G ++V L+ DVNA DA G T ++ G + ++L
Sbjct: 115 SGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 558 LHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIEN 617
L AA G D V L++ DVNA+D +G TPL LAA +G + ++L+ +GA + +
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD 69
Query: 618 ARNETALALA 627
+ T L LA
Sbjct: 70 SAGITPLHLA 79
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 343 VQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFL 402
V L P+HLAA G +I+ L+ G ++N+ +AG T + A H E ++ L
Sbjct: 32 VNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVL 91
Query: 403 ASEGADLGLINYAG 416
GAD+ + AG
Sbjct: 92 LKHGADVNAYDRAG 105
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
NG T +H A VE+LL D V + P+HLAA G +I+ L+
Sbjct: 38 NGLTPLHLAAANGQLEIVEVLLKNGAD----VNASDSAGITPLHLAAYDGHLEIVEVLLK 93
Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIA 423
G ++N+ AG T + A E ++ L GAD+ + G A I+
Sbjct: 94 HGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDIS 145
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 313 GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISA 372
G T +H A + VE+LL D V Y + P+HLAA G +I+ L+
Sbjct: 72 GITPLHLAAYDGHLEIVEVLLKHGAD----VNAYDRAGWTPLHLAALSGQLEIVEVLLKH 127
Query: 373 GCNINSRTAAGETAAMICARYKHEECLKFL 402
G ++N++ A G TA I E+ + L
Sbjct: 128 GADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 72/174 (41%), Gaps = 40/174 (22%)
Query: 93 LFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATT-AAVREDHLEILDLLIKXXXXXXXXX 151
L AA AG VR L++ GA+VN G A LEI+++L+K
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGAD----- 64
Query: 152 XXXXXTSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDANAIDR 211
+ A+D + L A + G + +V+ L+K G D NA DR
Sbjct: 65 -----------------VNASD----SAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDR 103
Query: 212 VLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDM 265
+ LH A +S Q+ +V +LL+ G ++ + +G ++D+
Sbjct: 104 ----AGWTPLHL---------AALSGQLEIVEVLLKHGADVNAQDALGLTAFDI 144
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 90 VTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATT-AAVREDHLEILDLLIK 142
+T L LAA G L +V LL GA+VN G A + HLEI+++L+K
Sbjct: 40 LTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLK 93
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 90 VTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATT-AAVREDHLEILDLLIK 142
+T L LAA+ G+L +V LL GA+VN G+ A LEI+++L+K
Sbjct: 73 ITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLK 126
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 70/124 (56%), Gaps = 1/124 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
R+L+ GA++ ++ G T + LA N + E++E V+L+ + AG L AA
Sbjct: 31 RILMANGADVNAEDASGWTPLHLAAFNGHLEIVE-VLLKNGADVNAVDHAGMTPLRLAAL 89
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
G ++V L+ DVNA+D +G+TPL LAA GH + ++L+ +GA + ++ +TA
Sbjct: 90 FGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTA 149
Query: 624 LALA 627
++
Sbjct: 150 FDIS 153
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Query: 520 GETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYD 579
G+ + A R+ EV ++++ + + ++G+ LH AA G ++V L+ D
Sbjct: 15 GKKLLEAARAGRDDEV--RILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD 72
Query: 580 VNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALA 627
VNA D G TPL LAA GH + ++L+ +GA + + T L LA
Sbjct: 73 VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLA 120
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Query: 313 GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISA 372
G T +H A + VE+LL D V + P+ LAA G +I+ L+
Sbjct: 47 GWTPLHLAAFNGHLEIVEVLLKNGAD----VNAVDHAGMTPLRLAALFGHLEIVEVLLKN 102
Query: 373 GCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIA 423
G ++N+ G T + A + H E ++ L GAD+ + G+ A I+
Sbjct: 103 GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDIS 153
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 77/181 (42%), Gaps = 38/181 (20%)
Query: 357 AARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAG 416
AAR G +R L++ G ++N+ A+G T + A H E ++ L GAD+ +++AG
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 417 QCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWA 476
+A G + V +++G + +++ +PL A+ +E
Sbjct: 81 MTPLRLAA----LFGHLEIVEVLLKNGADVNANDMEGHTPLHLA-------AMFGHLEIV 129
Query: 477 DVDLDEQDXXXXXXXXXXXXXXXXXXFRLLLHAGANIKLQNKYGETAITLAELNRNGEVL 536
+V LL GA++ Q+K+G+TA ++ N N ++
Sbjct: 130 EV---------------------------LLKNGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 537 E 537
E
Sbjct: 163 E 163
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
+LL GA++ + G T + LA L + E++E V+L+ + G LH AA
Sbjct: 64 EVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVE-VLLKNGADVNANDMEGHTPLHLAAM 122
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLL 606
G ++V L+ DVNA D G T ++ +G+ + ++L
Sbjct: 123 FGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 311 HNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLI 370
H G T + A L + VE+LL D V P+HLAA G +I+ L+
Sbjct: 78 HAGMTPLRLAALFGHLEIVEVLLKNGAD----VNANDMEGHTPLHLAAMFGHLEIVEVLL 133
Query: 371 SAGCNINSRTAAGETAAMICARYKHEECLKFL 402
G ++N++ G+TA I +E+ + L
Sbjct: 134 KNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 32/111 (28%)
Query: 187 ACFRGFVNVVDTLIKCGVDANAID-------------------RVLLQSSKPALHANFDC 227
A F G + +V+ L+K G D NA+D VLL++ A+ +
Sbjct: 54 AAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNG-----ADVNA 108
Query: 228 NALVG------AVVSRQISVVRLLLQAGVKMDIKVRMGAWSWD--MDTGEE 270
N + G A + + +V +LL+ G ++ + + G ++D +D G E
Sbjct: 109 NDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNE 159
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 90 VTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATT-AAVREDHLEILDLLIK 142
+T L LAA G+L +V LL GA+VN G+ A HLEI+++L+K
Sbjct: 81 MTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLK 134
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 27/122 (22%)
Query: 91 TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATT-AAVREDHLEILDLLIKXXXXXXX 149
T L LAA G+L +V LL GA+VN G A HLEI+++L+K
Sbjct: 49 TPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD--- 105
Query: 150 XXXXXXXTSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDANAI 209
+ A D+ +H ++A F G + +V+ L+K G D NA
Sbjct: 106 -------------------VNANDM-EGHTPLH--LAAMF-GHLEIVEVLLKNGADVNAQ 142
Query: 210 DR 211
D+
Sbjct: 143 DK 144
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 68/124 (54%), Gaps = 1/124 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
R+L+ GA++ + G T + LA ++ + E++E V+L++ + GF LH AA
Sbjct: 31 RILIANGADVNAVDNTGLTPLHLAAVSGHLEIVE-VLLKHGADVDAADVYGFTPLHLAAM 89
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
G ++V L+ DVNA D G TPL LAA GH + ++L+ GA + ++ +TA
Sbjct: 90 TGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTA 149
Query: 624 LALA 627
++
Sbjct: 150 FDIS 153
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 38/70 (54%)
Query: 558 LHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIEN 617
L AA+ G D V L++ DVNA D G TPL LAA SGH + ++L+ GA D +
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Query: 618 ARNETALALA 627
T L LA
Sbjct: 78 VYGFTPLHLA 87
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 313 GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISA 372
G T +H A + + VE+LL D + Y T P+HLAA G +I+ L+
Sbjct: 47 GLTPLHLAAVSGHLEIVEVLLKHGADVD-AADVYGFT---PLHLAAMTGHLEIVEVLLKY 102
Query: 373 GCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIA 423
G ++N+ G T + A H E ++ L GAD+ + G+ A I+
Sbjct: 103 GADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
+LL GA++ + YG T + LA + + E++E V+L+Y + G LH AA
Sbjct: 64 EVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVE-VLLKYGADVNAFDMTGSTPLHLAAD 122
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQ 604
G ++V L+ DVNA D G T ++ +G+ + +
Sbjct: 123 EGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAK 163
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 313 GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISA 372
G T +H A + + VE+LL D V + T P+HLAA G +I+ L+
Sbjct: 80 GFTPLHLAAMTGHLEIVEVLLKYGAD----VNAFDMTGSTPLHLAADEGHLEIVEVLLKY 135
Query: 373 GCNINSRTAAGETAAMICARYKHEECLK 400
G ++N++ G+TA I +E+ K
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNEDLAK 163
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 343 VQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFL 402
V T L P+HLAA G +I+ L+ G ++++ G T + A H E ++ L
Sbjct: 40 VNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVL 99
Query: 403 ASEGADLGLINYAGQC 418
GAD+ + G
Sbjct: 100 LKYGADVNAFDMTGST 115
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 29/143 (20%), Positives = 63/143 (44%), Gaps = 5/143 (3%)
Query: 390 CARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSS 449
AR ++ ++ L + GAD+ ++ G +A S G + V ++ G + ++
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVS----GHLEIVEVLLKHGADVDAA 76
Query: 450 NASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDXXXXXXXXXXXXXXXXXXFRLLLHA 509
+ F+PL ++ ++ L+++ D++ D +LL
Sbjct: 77 DVYGFTPLHLAAMTGHLEIVEVLLKYG-ADVNAFDMTGSTPLHLAADEGHLEIVEVLLKY 135
Query: 510 GANIKLQNKYGETAITLAELNRN 532
GA++ Q+K+G+TA ++ N N
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGN 158
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 27/126 (21%)
Query: 87 KTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATT-AAVREDHLEILDLLIKXXX 145
T +T L LAA +G+L +V LL GA+V+ G+ A HLEI+++L+K
Sbjct: 45 NTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLK--- 101
Query: 146 XXXXXXXXXXXTSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVD 205
Y ++ +T L A G + +V+ L+K G D
Sbjct: 102 -------------YGADVNAFDMTGST----------PLHLAADEGHLEIVEVLLKYGAD 138
Query: 206 ANAIDR 211
NA D+
Sbjct: 139 VNAQDK 144
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 69/181 (38%), Gaps = 42/181 (23%)
Query: 93 LFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATT-AAVREDHLEILDLLIKXXXXXXXXX 151
L AA AG VR L++ GA+VN G A HLEI+++L+K
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Query: 152 XXXXXTSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDANAIDR 211
+L A G + +V+ L+K G D NA D
Sbjct: 78 VYGFTPLHL--------------------------AAMTGHLEIVEVLLKYGADVNAFD- 110
Query: 212 VLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWD--MDTGE 269
+ S P LH D + +V +LL+ G ++ + + G ++D +D G
Sbjct: 111 --MTGSTP-LHLAAD---------EGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGN 158
Query: 270 E 270
E
Sbjct: 159 E 159
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 65/124 (52%), Gaps = 1/124 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
R+L+ GA+ + YG T + +A + E++E V+L + + G LH AA
Sbjct: 19 RILMANGADANAYDHYGRTPLHMAAAVGHLEIVE-VLLRNGADVNAVDTNGTTPLHLAAS 77
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
G ++V L+ DVNA DA G TPL LAA GH + ++L+ GA + ++ +TA
Sbjct: 78 LGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTA 137
Query: 624 LALA 627
++
Sbjct: 138 FDIS 141
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 311 HNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLI 370
H GRT +H A + VE+LL D V P+HLAA LG +I+ L+
Sbjct: 33 HYGRTPLHMAAAVGHLEIVEVLLRNGAD----VNAVDTNGTTPLHLAASLGHLEIVEVLL 88
Query: 371 SAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIA 423
G ++N++ A G T + A + H E ++ L GAD+ + G+ A I+
Sbjct: 89 KYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 141
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 61/149 (40%), Gaps = 15/149 (10%)
Query: 558 LHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIEN 617
L AA+ G D V L++ D NA D G TPL +AA GH + ++L+ +GA + +
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD 65
Query: 618 ARNETALALARXXXXXXXXXXVILDELALTLVLDGTYVKKHTKCGKGSPHVKLLKMWGKS 677
T L LA L L + VL + K G + L WG
Sbjct: 66 TNGTTPLHLAAS-----------LGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHL 114
Query: 678 RKRNVVCR-AAEVGPSDTFRWNRRRKFDV 705
V+ + A+V D F + FD+
Sbjct: 115 EIVEVLLKHGADVNAQDKF---GKTAFDI 140
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
+LL GA++ + G T + LA + E++E V+L+Y + K + G L+ AA
Sbjct: 52 EVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVE-VLLKYGADVNAKDATGITPLYLAAY 110
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLL 606
G ++V L+ DVNA D G T ++ G+ + ++L
Sbjct: 111 WGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
NG T +H A + VE+LL D V T + P++LAA G +I+ L+
Sbjct: 67 NGTTPLHLAASLGHLEIVEVLLKYGAD----VNAKDATGITPLYLAAYWGHLEIVEVLLK 122
Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFL 402
G ++N++ G+TA I +E+ + L
Sbjct: 123 HGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 69/171 (40%), Gaps = 38/171 (22%)
Query: 357 AARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAG 416
AAR G +R L++ G + N+ G T + A H E ++ L GAD+ ++ G
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNG 68
Query: 417 QCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWA 476
+A S LG + V ++ G + + +A+ +PL W
Sbjct: 69 TTPLHLAAS----LGHLEIVEVLLKYGADVNAKDATGITPLYLAAY------------WG 112
Query: 477 DVDLDEQDXXXXXXXXXXXXXXXXXXFRLLLHAGANIKLQNKYGETAITLA 527
+++ E +LL GA++ Q+K+G+TA ++
Sbjct: 113 HLEIVE----------------------VLLKHGADVNAQDKFGKTAFDIS 141
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 49/124 (39%), Gaps = 31/124 (25%)
Query: 91 TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA---AVREDHLEILDLLIKXXXXX 147
T L +AA G+L +V LL GA+VN G TT A HLEI+++L+K
Sbjct: 37 TPLHMAAAVGHLEIVEVLLRNGADVNAVDTNG--TTPLHLAASLGHLEIVEVLLKYGADV 94
Query: 148 XXXXXXXXXTSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDAN 207
YL A + G + +V+ L+K G D N
Sbjct: 95 NAKDATGITPLYL--------------------------AAYWGHLEIVEVLLKHGADVN 128
Query: 208 AIDR 211
A D+
Sbjct: 129 AQDK 132
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 88 TEVTALFLAAHAGNLTLVRKLLSLGANVNQK 118
T +T L+LAA+ G+L +V LL GA+VN +
Sbjct: 100 TGITPLYLAAYWGHLEIVEVLLKHGADVNAQ 130
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 56/98 (57%), Gaps = 4/98 (4%)
Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
+G T +H+A +A V+ LL+ D V SK P+HLAA+ G A+I++ L++
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGAD----VNARSKDGNTPLHLAAKNGHAEIVKLLLA 63
Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGADL 409
G ++N+R+ G T + + H E +K L ++GAD+
Sbjct: 64 KGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADV 101
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 554 GFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKC 613
G LH AAK G + V L+S+ DVNA DG TPL LAAK+GH + +LL++ GA
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 614 DIENARNETALALAR 628
+ + T LA+
Sbjct: 69 NARSKDGNTPEHLAK 83
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%)
Query: 347 SKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEG 406
SK P+H AA+ G A+ +++L+S G ++N+R+ G T + A+ H E +K L ++G
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 407 ADLGLINYAGQCANSIAKSS 426
AD+ + G +AK +
Sbjct: 66 ADVNARSKDGNTPEHLAKKN 85
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
Query: 518 KYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRC 577
K G T + A N + E +++ +L + + G LH AAK G ++V L+++
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKK-LLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 578 YDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENAR 619
DVNA DG TP LA K+GH + +LL + GA NAR
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADV---NAR 104
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
+G T +H A +A V+LLL D V SK P HLA + G +I++ L +
Sbjct: 41 DGNTPLHLAAKNGHAEIVKLLLAKGAD----VNARSKDGNTPEHLAKKNGHHEIVKLLDA 96
Query: 372 AGCNINSRT 380
G ++N+R+
Sbjct: 97 KGADVNARS 105
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 586 DGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALA 627
DG TPL AAK+GH + L+S GA + + T L LA
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLA 49
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 91 TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA-AVREDHLEILDLLI 141
T L AA G+ V+KLLS GA+VN + G A + H EI+ LL+
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL 62
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 520 GETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYD 579
G T + LA N + EV+ +++LE + K G LH AA+ G ++V L+ D
Sbjct: 2 GRTPLHLAARNGHLEVV-KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 580 VNASDADGYTPLMLAAKSGHGSVCQLLISSGA 611
VNA D +G TPL LAA++GH V +LL+ +GA
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 44/74 (59%)
Query: 554 GFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKC 613
G LH AA+ G ++V L+ DVNA D +G TPL LAA++GH V +LL+ +GA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 614 DIENARNETALALA 627
+ ++ T L LA
Sbjct: 62 NAKDKNGRTPLHLA 75
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
NGRT +H A + V+LLL D V K P+HLAAR G ++++ L+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD----VNAKDKNGRTPLHLAARNGHLEVVKLLLE 56
Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGA 407
AG ++N++ G T + AR H E +K L GA
Sbjct: 57 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%)
Query: 353 PIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLI 412
P+HLAAR G ++++ L+ AG ++N++ G T + AR H E +K L GAD+
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 413 NYAGQCANSIA 423
+ G+ +A
Sbjct: 65 DKNGRTPLHLA 75
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 586 DGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALA 627
+G TPL LAA++GH V +LL+ +GA + ++ T L LA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 42
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 87 KTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA-AVREDHLEILDLLIK 142
K T L LAA G+L +V+ LL GA+VN K G A R HLE++ LL++
Sbjct: 33 KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 91 TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA-AVREDHLEILDLLIK 142
T L LAA G+L +V+ LL GA+VN K G A R HLE++ LL++
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 56
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 13/73 (17%)
Query: 187 ACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLL 246
A G + VV L++ G D NA D+ + + LH A + + VV+LLL
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKDK----NGRTPLHL---------AARNGHLEVVKLLL 55
Query: 247 QAGVKMDIKVRMG 259
+AG ++ K + G
Sbjct: 56 EAGADVNAKDKNG 68
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 1/124 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
R+L+ GA++ + G T + LA + E++E V+L+ + + G LH AA
Sbjct: 31 RILMANGADVNAADVVGWTPLHLAAYWGHLEIVE-VLLKNGADVNAYDTLGSTPLHLAAH 89
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
G ++V L+ DVNA D +G TPL LAA GH + ++L+ GA + ++ +TA
Sbjct: 90 FGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTA 149
Query: 624 LALA 627
++
Sbjct: 150 FDIS 153
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 313 GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISA 372
G T +H A + VE+LL D V Y P+HLAA G +I+ L+
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLLKNGAD----VNAYDTLGSTPLHLAAHFGHLEIVEVLLKN 102
Query: 373 GCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIA 423
G ++N++ G T + A H E ++ L GAD+ + G+ A I+
Sbjct: 103 GADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 40/70 (57%)
Query: 558 LHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIEN 617
L AA+ G D V L++ DVNA+D G+TPL LAA GH + ++L+ +GA + +
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYD 77
Query: 618 ARNETALALA 627
T L LA
Sbjct: 78 TLGSTPLHLA 87
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
+LL GA++ + G T + LA + E++E V+L+ + K G LH AA
Sbjct: 64 EVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVE-VLLKNGADVNAKDDNGITPLHLAAN 122
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLL 606
RG ++V L+ DVNA D G T ++ +G+ + ++L
Sbjct: 123 RGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 313 GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISA 372
G T +H A + VE+LL D V + P+HLAA G +I+ L+
Sbjct: 80 GSTPLHLAAHFGHLEIVEVLLKNGAD----VNAKDDNGITPLHLAANRGHLEIVEVLLKY 135
Query: 373 GCNINSRTAAGETAAMICARYKHEECLKFL 402
G ++N++ G+TA I +E+ + L
Sbjct: 136 GADVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 91 TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATT-AAVREDHLEILDLLIK 142
T L LAAH G+L +V LL GA+VN K G A HLEI+++L+K
Sbjct: 82 TPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLK 134
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 8/127 (6%)
Query: 93 LFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATT-AAVREDHLEILDLLIKXXXXXXXXX 151
L AA AG VR L++ GA+VN G+ A HLEI+++L+K
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYD 77
Query: 152 XXXXX----TSYLGQARPAELLM--ATDL-IRPQVSVHALVSACFRGFVNVVDTLIKCGV 204
++ G E+L+ D+ + + L A RG + +V+ L+K G
Sbjct: 78 TLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGA 137
Query: 205 DANAIDR 211
D NA D+
Sbjct: 138 DVNAQDK 144
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 552 SAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGA 611
AG LH AAKRG ++V L+ DVNASD+ G TPL LAA GH + ++L+ GA
Sbjct: 45 DAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGA 104
Query: 612 KCDIENARNETALALA 627
+ ++ +TA ++
Sbjct: 105 DVNAQDKFGKTAFDIS 120
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
R+L+ GA++ + G T + LA + E++E V+L++ + S G LH AA
Sbjct: 31 RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVE-VLLKHGADVNASDSWGRTPLHLAAT 89
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLL 606
G ++V L+ DVNA D G T ++ +G+ + ++L
Sbjct: 90 VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%)
Query: 343 VQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFL 402
V + P+HLAA+ G +I+ L+ G ++N+ + G T + A H E ++ L
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVL 99
Query: 403 ASEGADLGLINYAGQCANSIA 423
GAD+ + G+ A I+
Sbjct: 100 LEYGADVNAQDKFGKTAFDIS 120
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 313 GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISA 372
G T +H A + VE+LL D ++ +T P+HLAA +G +I+ L+
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNAS-DSWGRT---PLHLAATVGHLEIVEVLLEY 102
Query: 373 GCNINSRTAAGETAAMICARYKHEECLKFL 402
G ++N++ G+TA I +E+ + L
Sbjct: 103 GADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 15/86 (17%)
Query: 187 ACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLL 246
A RG + +V+ L+K G D NA D + LH A VG + +V +LL
Sbjct: 54 AAKRGHLEIVEVLLKHGADVNASD----SWGRTPLH----LAATVG-----HLEIVEVLL 100
Query: 247 QAGVKMDIKVRMGAWSWD--MDTGEE 270
+ G ++ + + G ++D +D G E
Sbjct: 101 EYGADVNAQDKFGKTAFDISIDNGNE 126
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 90 VTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATT-AAVREDHLEILDLLIK 142
VT L LAA G+L +V LL GA+VN G A HLEI+++L++
Sbjct: 48 VTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLE 101
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 552 SAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGA 611
AG LH AAKRG ++V L+ DVNASD G TPL LAA GH + ++L+ GA
Sbjct: 45 DAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGA 104
Query: 612 KCDIENARNETALALA 627
+ ++ +TA ++
Sbjct: 105 DVNAQDKFGKTAFDIS 120
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%)
Query: 343 VQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFL 402
V + P+HLAA+ G +I+ L+ G ++N+ G T + A H E ++ L
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVL 99
Query: 403 ASEGADLGLINYAGQCANSIA 423
GAD+ + G+ A I+
Sbjct: 100 LEYGADVNAQDKFGKTAFDIS 120
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
R+L+ GA++ + G T + LA + E++E V+L++ + G LH AA
Sbjct: 31 RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVE-VLLKHGADVNASDIWGRTPLHLAAT 89
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLL 606
G ++V L+ DVNA D G T ++ +G+ + ++L
Sbjct: 90 VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 313 GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISA 372
G T +H A + VE+LL D + +T P+HLAA +G +I+ L+
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNAS-DIWGRT---PLHLAATVGHLEIVEVLLEY 102
Query: 373 GCNINSRTAAGETAAMICARYKHEECLKFL 402
G ++N++ G+TA I +E+ + L
Sbjct: 103 GADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 90 VTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATT-AAVREDHLEILDLLIK 142
VT L LAA G+L +V LL GA+VN G A HLEI+++L++
Sbjct: 48 VTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLE 101
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 15/86 (17%)
Query: 187 ACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLL 246
A RG + +V+ L+K G D NA D + P LH A VG + +V +LL
Sbjct: 54 AAKRGHLEIVEVLLKHGADVNASD---IWGRTP-LH----LAATVG-----HLEIVEVLL 100
Query: 247 QAGVKMDIKVRMGAWSWD--MDTGEE 270
+ G ++ + + G ++D +D G E
Sbjct: 101 EYGADVNAQDKFGKTAFDISIDNGNE 126
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 121/306 (39%), Gaps = 68/306 (22%)
Query: 313 GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISA 372
G T +H+A+ + VELLL D PV K P LAA GS K+L+ +S
Sbjct: 59 GWTPLHNAVQMSREDIVELLLRHGAD---PV-LRKKNGATPFILAAIAGSVKLLKLFLSK 114
Query: 373 GCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGF 432
G ++N G TA M A Y + LKFL GA++ L + R G
Sbjct: 115 GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE------DQERLRKGG 168
Query: 433 QQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDXXXXXXXX 492
A++D+ G+ V+ LK L LDE
Sbjct: 169 ATALMDAAEKGH---------------------VEVLKIL-------LDEM--------- 191
Query: 493 XXXXXXXXXXFRLLLHAGANIKLQNKYGETAITLAELNRNG---EVLEQVILEYALEEGQ 549
GA++ + G A+ A L+ + E + ++L++ +
Sbjct: 192 -----------------GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV 234
Query: 550 KGSAGFYALHRAAKRGDFDLVHTLVSRCY-DVNASDADGYTPLMLAAKSGHGSVCQLLIS 608
+G G L A ++ LV L+ + + ++N +D+DG T L+LA + + +LL
Sbjct: 235 RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 294
Query: 609 SGAKCD 614
GA D
Sbjct: 295 RGASTD 300
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 530 NRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYT 589
N + ++++Q++ A Q+ G+ LH A + D+V L+ D +G T
Sbjct: 35 NEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGAT 94
Query: 590 PLMLAAKSGHGSVCQLLISSGA---KCDI 615
P +LAA +G + +L +S GA +CD
Sbjct: 95 PFILAAIAGSVKLLKLFLSKGADVNECDF 123
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 47/116 (40%)
Query: 506 LLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRG 565
LL GAN+ Q + G + + E + +++L + + + G AA G
Sbjct: 44 LLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAG 103
Query: 566 DFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNE 621
L+ +S+ DVN D G+T M AA G + L GA ++ E
Sbjct: 104 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE 159
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 69/179 (38%), Gaps = 35/179 (19%)
Query: 87 KTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGY-ATTAAVREDHLEILDLLIKXXX 145
K T LAA AG++ L++ LS GA+VN+ F G+ A A ++ L L K
Sbjct: 90 KNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGA 149
Query: 146 XXXXXXXXXXXTSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLI-KCGV 204
L + AL+ A +G V V+ L+ + G
Sbjct: 150 NVNLRRKTKEDQERLRKG----------------GATALMDAAEKGHVEVLKILLDEMGA 193
Query: 205 DANAIDRVLLQSSKPALHANFDCNALVGAVVSRQIS----VVRLLLQAGVKMDIKVRMG 259
D NA D N NAL+ A++S S + LLL G ++++ G
Sbjct: 194 DVNACD-------------NMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERG 239
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 546 EEGQKGSAGFYA-------LHRAAKRGDFDLVHTLVSRCYDVNASDAD-GYTPLMLAAKS 597
+EG S+G A L +A + D DLV L+ +VN + + G+TPL A +
Sbjct: 10 QEGPTSSSGRRAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQM 69
Query: 598 GHGSVCQLLISSGAKCDIENARNETALALA 627
+ +LL+ GA + T LA
Sbjct: 70 SREDIVELLLRHGADPVLRKKNGATPFILA 99
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 121/306 (39%), Gaps = 68/306 (22%)
Query: 313 GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISA 372
G T +H+A+ + VELLL D PV K P LAA GS K+L+ +S
Sbjct: 39 GWTPLHNAVQMSREDIVELLLRHGAD---PV-LRKKNGATPFLLAAIAGSVKLLKLFLSK 94
Query: 373 GCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGF 432
G ++N G TA M A Y + LKFL GA++ L + R G
Sbjct: 95 GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE------DQERLRKGG 148
Query: 433 QQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDXXXXXXXX 492
A++D+ G+ V+ LK L LDE
Sbjct: 149 ATALMDAAEKGH---------------------VEVLKIL-------LDEM--------- 171
Query: 493 XXXXXXXXXXFRLLLHAGANIKLQNKYGETAITLAELNRNG---EVLEQVILEYALEEGQ 549
GA++ + G A+ A L+ + E + ++L++ +
Sbjct: 172 -----------------GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV 214
Query: 550 KGSAGFYALHRAAKRGDFDLVHTLVSRCY-DVNASDADGYTPLMLAAKSGHGSVCQLLIS 608
+G G L A ++ LV L+ + + ++N +D+DG T L+LA + + +LL
Sbjct: 215 RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 274
Query: 609 SGAKCD 614
GA D
Sbjct: 275 RGASTD 280
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 530 NRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYT 589
N + ++++Q++ A Q+ G+ LH A + D+V L+ D +G T
Sbjct: 15 NEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGAT 74
Query: 590 PLMLAAKSGHGSVCQLLISSGA---KCDI 615
P +LAA +G + +L +S GA +CD
Sbjct: 75 PFLLAAIAGSVKLLKLFLSKGADVNECDF 103
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 47/116 (40%)
Query: 506 LLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRG 565
LL GAN+ Q + G + + E + +++L + + + G AA G
Sbjct: 24 LLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG 83
Query: 566 DFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNE 621
L+ +S+ DVN D G+T M AA G + L GA ++ E
Sbjct: 84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE 139
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 69/179 (38%), Gaps = 35/179 (19%)
Query: 87 KTEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGY-ATTAAVREDHLEILDLLIKXXX 145
K T LAA AG++ L++ LS GA+VN+ F G+ A A ++ L L K
Sbjct: 70 KNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGA 129
Query: 146 XXXXXXXXXXXTSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLI-KCGV 204
L + AL+ A +G V V+ L+ + G
Sbjct: 130 NVNLRRKTKEDQERLRKG----------------GATALMDAAEKGHVEVLKILLDEMGA 173
Query: 205 DANAIDRVLLQSSKPALHANFDCNALVGAVVSRQIS----VVRLLLQAGVKMDIKVRMG 259
D NA D N NAL+ A++S S + LLL G ++++ G
Sbjct: 174 DVNACD-------------NMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERG 219
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 556 YALHRAAKRGDFDLVHTLVSRCYDVNASDAD-GYTPLMLAAKSGHGSVCQLLISSGAKCD 614
+ L +A + D DLV L+ +VN + + G+TPL A + + +LL+ GA
Sbjct: 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66
Query: 615 IENARNETALALA 627
+ T LA
Sbjct: 67 LRKKNGATPFLLA 79
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 519 YGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCY 578
+G TA+ + +L N E+ +++L A + K GF +H AA+ G D + TL+
Sbjct: 37 FGRTALQVMKLG-NPEIARRLLLRGANPD-LKDRTGFAVIHDAARAGQLDTLQTLLEFQA 94
Query: 579 DVNASDADGYTPLMLAAKSGHGSVCQLLIS-SGAKCDIENARNETALALAR 628
DVN D +G PL LAAK GH V + L+ + + N + +TA LAR
Sbjct: 95 DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR 145
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 6/110 (5%)
Query: 300 MLFQHISPNIL-HNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAA 358
+L + +P++ G +IH A ++ LL D V P+HLAA
Sbjct: 56 LLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQAD----VNIEDNEGNLPLHLAA 111
Query: 359 RLGSAKILRRLIS-AGCNINSRTAAGETAAMICARYKHEECLKFLASEGA 407
+ G +++ L+ N+ R G+TA + Y E + + + GA
Sbjct: 112 KEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 519 YGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCY 578
+G TA+ + +L N E+ +++L A + K GF +H AA+ G D + TL+
Sbjct: 37 FGRTALQVMKLG-NPEIARRLLLRGANPD-LKDRTGFAVIHDAARAGFLDTLQTLLENQA 94
Query: 579 DVNASDADGYTPLMLAAKSGHGSVCQLLIS-SGAKCDIENARNETALALAR 628
DVN D +G PL LAAK GH V + L+ + + N + +TA LAR
Sbjct: 95 DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR 145
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 353 PIHLAARLGSAKILRRLIS-AGCNINSRTAAGETAAMICARYKHEECLKFLASEGA 407
P+HLAA+ G +++ L+ N+ R G+TA + Y E + + + GA
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 1/126 (0%)
Query: 503 FRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAA 562
+ LL GA + N+ G T + A ++N + ++LE K A+HRAA
Sbjct: 89 VKALLGKGAQVNAVNQNGCTPLHYAA-SKNRHEIAVMLLEGGANPDAKDHYEATAMHRAA 147
Query: 563 KRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNET 622
+G+ ++H L+ N D +G TPL LA +LL+S GA IEN +T
Sbjct: 148 AKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKT 207
Query: 623 ALALAR 628
L +A+
Sbjct: 208 PLQVAK 213
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 540 ILEYALEEG----QKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAA 595
I+E+ L+ G K AG+ LH AA G ++V L+ + VNA + +G TPL AA
Sbjct: 55 IVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAA 114
Query: 596 KSGHGSVCQLLISSGAKCDIENARNETAL 624
+ +L+ GA D ++ TA+
Sbjct: 115 SKNRHEIAVMLLEGGANPDAKDHYEATAM 143
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%)
Query: 557 ALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIE 616
ALH A G ++V L+ VN D G++PL +AA +G + + L+ GA+ +
Sbjct: 43 ALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAV 102
Query: 617 NARNETALALA 627
N T L A
Sbjct: 103 NQNGCTPLHYA 113
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 4/98 (4%)
Query: 311 HNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLI 370
+ RT +H A + VE LL V PV P+H+AA G +I++ L+
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGV----PVNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 371 SAGCNINSRTAAGETAAMICARYKHEECLKFLASEGAD 408
G +N+ G T A E L GA+
Sbjct: 94 GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 81/210 (38%), Gaps = 34/210 (16%)
Query: 215 QSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVG 274
Q S+ ALH + C+A +V LLQ GV ++ K G WS L +
Sbjct: 38 QDSRTALH--WACSA-------GHTEIVEFLLQLGVPVNDKDDAG-WS-------PLHIA 80
Query: 275 AGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLN 334
A D V+ GA ++ + Q NG T +H+A N +LL
Sbjct: 81 ASAGRDEI-----VKALLGKGAQVNAVNQ--------NGCTPLHYAASKNRHEIAVMLLE 127
Query: 335 CAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYK 394
+ + E +H AA G+ K++ L+ + N + G T + +
Sbjct: 128 GGANPD----AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEE 183
Query: 395 HEECLKFLASEGADLGLINYAGQCANSIAK 424
E K L S+GA + + N + +AK
Sbjct: 184 RVEEAKLLVSQGASIYIENKEEKTPLQVAK 213
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 1/126 (0%)
Query: 503 FRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAA 562
+ LL GA + N+ G T + A ++N + ++LE K A+HRAA
Sbjct: 90 VKALLGKGAQVNAVNQNGCTPLHYAA-SKNRHEIAVMLLEGGANPDAKDHYEATAMHRAA 148
Query: 563 KRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNET 622
+G+ ++H L+ N D +G TPL LA +LL+S GA IEN +T
Sbjct: 149 AKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKT 208
Query: 623 ALALAR 628
L +A+
Sbjct: 209 PLQVAK 214
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 540 ILEYALEEG----QKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAA 595
I+E+ L+ G K AG+ LH AA G ++V L+ + VNA + +G TPL AA
Sbjct: 56 IVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAA 115
Query: 596 KSGHGSVCQLLISSGAKCDIENARNETAL 624
+ +L+ GA D ++ TA+
Sbjct: 116 SKNRHEIAVMLLEGGANPDAKDHYEATAM 144
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%)
Query: 557 ALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIE 616
ALH A G ++V L+ VN D G++PL +AA +G + + L+ GA+ +
Sbjct: 44 ALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAV 103
Query: 617 NARNETALALA 627
N T L A
Sbjct: 104 NQNGCTPLHYA 114
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 4/98 (4%)
Query: 311 HNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLI 370
+ RT +H A + VE LL V PV P+H+AA G +I++ L+
Sbjct: 39 QDSRTALHWACSAGHTEIVEFLLQLGV----PVNDKDDAGWSPLHIAASAGRDEIVKALL 94
Query: 371 SAGCNINSRTAAGETAAMICARYKHEECLKFLASEGAD 408
G +N+ G T A E L GA+
Sbjct: 95 GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 132
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 81/210 (38%), Gaps = 34/210 (16%)
Query: 215 QSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVG 274
Q S+ ALH + C+A +V LLQ GV ++ K G WS L +
Sbjct: 39 QDSRTALH--WACSA-------GHTEIVEFLLQLGVPVNDKDDAG-WS-------PLHIA 81
Query: 275 AGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLN 334
A D V+ GA ++ + Q NG T +H+A N +LL
Sbjct: 82 ASAGRDEI-----VKALLGKGAQVNAVNQ--------NGCTPLHYAASKNRHEIAVMLLE 128
Query: 335 CAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYK 394
+ + E +H AA G+ K++ L+ + N + G T + +
Sbjct: 129 GGANPD----AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEE 184
Query: 395 HEECLKFLASEGADLGLINYAGQCANSIAK 424
E K L S+GA + + N + +AK
Sbjct: 185 RVEEAKLLVSQGASIYIENKEEKTPLQVAK 214
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 519 YGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCY 578
+G TA+ + +L N E+ +++L A + K GF +H AA+ G D + TL+
Sbjct: 37 FGRTALQVMKLG-NPEIARRLLLRGANPD-LKDRTGFAVIHDAARAGFLDTLQTLLEFQA 94
Query: 579 DVNASDADGYTPLMLAAKSGHGSVCQLLIS-SGAKCDIENARNETALALAR 628
DVN D +G PL LAAK GH V + L+ + + N + +TA LAR
Sbjct: 95 DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR 145
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 353 PIHLAARLGSAKILRRLIS-AGCNINSRTAAGETAAMICARYKHEECLKFLASEGA 407
P+HLAA+ G +++ L+ N+ R G+TA + Y E + + + GA
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 519 YGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCY 578
+G TA+ + +L N E+ +++L A + K GF +H AA+ G D + TL+
Sbjct: 37 FGRTALQVMKLG-NPEIARRLLLRGANPD-LKDRTGFAVIHDAARAGFLDTLQTLLEFQA 94
Query: 579 DVNASDADGYTPLMLAAKSGHGSVCQLLIS-SGAKCDIENARNETALALAR 628
DVN D +G PL LAAK GH V + L+ + + N + +TA LAR
Sbjct: 95 DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR 145
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 353 PIHLAARLGSAKILRRLIS-AGCNINSRTAAGETAAMICARYKHEECLKFLASEGA 407
P+HLAA+ G +++ L+ N+ R G+TA + Y E + + + GA
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 1/124 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
R+L+ GA++ + G T + LA + E++E V+L++ + G LH AA
Sbjct: 31 RILMANGADVNATDASGLTPLHLAATYGHLEIVE-VLLKHGADVNAIDIMGSTPLHLAAL 89
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
G ++V L+ DVNA D G TPL LAA GH + ++L+ GA + ++ +TA
Sbjct: 90 IGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTA 149
Query: 624 LALA 627
++
Sbjct: 150 FDIS 153
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
+G T +H A + VE+LL D V P+HLAA +G +I+ L+
Sbjct: 46 SGLTPLHLAATYGHLEIVEVLLKHGAD----VNAIDIMGSTPLHLAALIGHLEIVEVLLK 101
Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIA 423
G ++N+ G+T + A H E ++ L GAD+ + G+ A I+
Sbjct: 102 HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 153
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 313 GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISA 372
G T +H A L + VE+LL D V T+ T P+HLAA +G +I+ L+
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLKHGADVN-AVDTWGDT---PLHLAAIMGHLEIVEVLLKH 135
Query: 373 GCNINSRTAAGETAAMICARYKHEECLKFL 402
G ++N++ G+TA I +E+ + L
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 75/181 (41%), Gaps = 38/181 (20%)
Query: 357 AARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAG 416
AAR G +R L++ G ++N+ A+G T + A Y H E ++ L GAD+ I+ G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG 80
Query: 417 QCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWA 476
+A +G + V ++ G + + + +PL A+ +E
Sbjct: 81 STPLHLAA----LIGHLEIVEVLLKHGADVNAVDTWGDTPLHLA-------AIMGHLEIV 129
Query: 477 DVDLDEQDXXXXXXXXXXXXXXXXXXFRLLLHAGANIKLQNKYGETAITLAELNRNGEVL 536
+V LL GA++ Q+K+G+TA ++ N N ++
Sbjct: 130 EV---------------------------LLKHGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 537 E 537
E
Sbjct: 163 E 163
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
+LL GA++ + G T + LA L + E++E V+L++ + + G LH AA
Sbjct: 64 EVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVE-VLLKHGADVNAVDTWGDTPLHLAAI 122
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLL 606
G ++V L+ DVNA D G T ++ +G+ + ++L
Sbjct: 123 MGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 74/181 (40%), Gaps = 42/181 (23%)
Query: 93 LFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATT-AAVREDHLEILDLLIKXXXXXXXXX 151
L AA AG VR L++ GA+VN G A HLEI+++L+K
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLK--------- 68
Query: 152 XXXXXTSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDANAIDR 211
+ +++ +T L A G + +V+ L+K G D NA+D
Sbjct: 69 -------HGADVNAIDIMGST----------PLHLAALIGHLEIVEVLLKHGADVNAVDT 111
Query: 212 VLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWD--MDTGE 269
P LH A + + +V +LL+ G ++ + + G ++D +D G
Sbjct: 112 ---WGDTP-LHL---------AAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 158
Query: 270 E 270
E
Sbjct: 159 E 159
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 47/123 (38%), Gaps = 27/123 (21%)
Query: 90 VTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATT-AAVREDHLEILDLLIKXXXXXX 148
+T L LAA G+L +V LL GA+VN G A HLEI+++L+K
Sbjct: 48 LTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVN 107
Query: 149 XXXXXXXXTSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDANA 208
+L A G + +V+ L+K G D NA
Sbjct: 108 AVDTWGDTPLHL--------------------------AAIMGHLEIVEVLLKHGADVNA 141
Query: 209 IDR 211
D+
Sbjct: 142 QDK 144
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 1/124 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
R+L+ GA++ + G T + LA + E++E V+L++ + G LH AA
Sbjct: 31 RILMANGADVNATDASGLTPLHLAATYGHLEIVE-VLLKHGADVNAIDIXGSTPLHLAAL 89
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
G ++V L+ DVNA D G TPL LAA GH + ++L+ GA + ++ +TA
Sbjct: 90 IGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTA 149
Query: 624 LALA 627
++
Sbjct: 150 FDIS 153
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
+G T +H A + VE+LL D V P+HLAA +G +I+ L+
Sbjct: 46 SGLTPLHLAATYGHLEIVEVLLKHGAD----VNAIDIXGSTPLHLAALIGHLEIVEVLLK 101
Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIA 423
G ++N+ G+T + A H E ++ L GAD+ + G+ A I+
Sbjct: 102 HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 153
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 313 GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISA 372
G T +H A L + VE+LL D V T+ T P+HLAA +G +I+ L+
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLKHGADVN-AVDTWGDT---PLHLAAIMGHLEIVEVLLKH 135
Query: 373 GCNINSRTAAGETAAMICARYKHEECLKFL 402
G ++N++ G+TA I +E+ + L
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 75/181 (41%), Gaps = 38/181 (20%)
Query: 357 AARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAG 416
AAR G +R L++ G ++N+ A+G T + A Y H E ++ L GAD+ I+ G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG 80
Query: 417 QCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWA 476
+A +G + V ++ G + + + +PL A+ +E
Sbjct: 81 STPLHLAA----LIGHLEIVEVLLKHGADVNAVDTWGDTPLHLA-------AIMGHLEIV 129
Query: 477 DVDLDEQDXXXXXXXXXXXXXXXXXXFRLLLHAGANIKLQNKYGETAITLAELNRNGEVL 536
+V LL GA++ Q+K+G+TA ++ N N ++
Sbjct: 130 EV---------------------------LLKHGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 537 E 537
E
Sbjct: 163 E 163
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
+LL GA++ + G T + LA L + E++E V+L++ + + G LH AA
Sbjct: 64 EVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVE-VLLKHGADVNAVDTWGDTPLHLAAI 122
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLL 606
G ++V L+ DVNA D G T ++ +G+ + ++L
Sbjct: 123 MGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 70/181 (38%), Gaps = 42/181 (23%)
Query: 93 LFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATT-AAVREDHLEILDLLIKXXXXXXXXX 151
L AA AG VR L++ GA+VN G A HLEI+++L+K
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 152 XXXXXTSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDANAIDR 211
+L A G + +V+ L+K G D NA+D
Sbjct: 78 IXGSTPLHL--------------------------AALIGHLEIVEVLLKHGADVNAVDT 111
Query: 212 VLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWD--MDTGE 269
P LH A + + +V +LL+ G ++ + + G ++D +D G
Sbjct: 112 ---WGDTP-LHL---------AAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 158
Query: 270 E 270
E
Sbjct: 159 E 159
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 47/123 (38%), Gaps = 27/123 (21%)
Query: 90 VTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATT-AAVREDHLEILDLLIKXXXXXX 148
+T L LAA G+L +V LL GA+VN G A HLEI+++L+K
Sbjct: 48 LTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVN 107
Query: 149 XXXXXXXXTSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDANA 208
+L A G + +V+ L+K G D NA
Sbjct: 108 AVDTWGDTPLHL--------------------------AAIMGHLEIVEVLLKHGADVNA 141
Query: 209 IDR 211
D+
Sbjct: 142 QDK 144
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%)
Query: 558 LHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIEN 617
L AA+ G D V L++ DVNA D DGYTPL LAA+ GH + ++L+ +GA + ++
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Query: 618 ARNETALALA 627
+TA ++
Sbjct: 66 KFGKTAFDIS 75
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 343 VQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFL 402
V K P+HLAAR G +I+ L+ AG ++N++ G+TA I +E+ + L
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 87
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 93 LFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATT-AAVREDHLEILDLLIK 142
L AA AG VR L++ GA+VN K GY A RE HLEI+++L+K
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 56
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 550 KGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLL 606
K G+ LH AA+ G ++V L+ DVNA D G T ++ +G+ + ++L
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 87
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%)
Query: 552 SAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGA 611
AG LH AAKRG ++V L+ DVNA D G TPL LAA GH + ++L+ GA
Sbjct: 45 DAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGA 104
Query: 612 KCDIENARNETALALA 627
+ ++ +TA ++
Sbjct: 105 DVNAQDKFGKTAFDIS 120
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%)
Query: 343 VQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFL 402
V + P+HLAA+ G +I+ L+ G ++N+R G T + A H E ++ L
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVL 99
Query: 403 ASEGADLGLINYAGQCANSIA 423
GAD+ + G+ A I+
Sbjct: 100 LEYGADVNAQDKFGKTAFDIS 120
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
R+L+ GA++ + G T + LA + E++E V+L++ + + G LH AA
Sbjct: 31 RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVE-VLLKHGADVNARDIWGRTPLHLAAT 89
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLL 606
G ++V L+ DVNA D G T ++ +G+ + ++L
Sbjct: 90 VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 313 GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISA 372
G T +H A + VE+LL D + +T P+HLAA +G +I+ L+
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVN-ARDIWGRT---PLHLAATVGHLEIVEVLLEY 102
Query: 373 GCNINSRTAAGETAAMICARYKHEECLKFL 402
G ++N++ G+TA I +E+ + L
Sbjct: 103 GADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 90 VTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATT-AAVREDHLEILDLLIK 142
VT L LAA G+L +V LL GA+VN + G A HLEI+++L++
Sbjct: 48 VTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLE 101
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 15/86 (17%)
Query: 187 ACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLL 246
A RG + +V+ L+K G D NA D + P LH A VG + +V +LL
Sbjct: 54 AAKRGHLEIVEVLLKHGADVNARD---IWGRTP-LH----LAATVG-----HLEIVEVLL 100
Query: 247 QAGVKMDIKVRMGAWSWD--MDTGEE 270
+ G ++ + + G ++D +D G E
Sbjct: 101 EYGADVNAQDKFGKTAFDISIDNGNE 126
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 1/125 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
+ LL GA++ N+ G T + A ++N + ++LE K A+HRAA
Sbjct: 90 KALLVKGAHVNAVNQNGCTPLHYAA-SKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAA 148
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
+G+ +VH L+ N D +G TPL LA + L++ GA IEN +T
Sbjct: 149 KGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTP 208
Query: 624 LALAR 628
L +A+
Sbjct: 209 LQVAK 213
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 540 ILEYALEEG----QKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAA 595
I+E+ L+ G K AG+ LH AA G ++V L+ + VNA + +G TPL AA
Sbjct: 55 IVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAA 114
Query: 596 KSGHGSVCQLLISSGAKCDIENARNETAL 624
+ +L+ GA D ++ + TA+
Sbjct: 115 SKNRHEIAVMLLEGGANPDAKDHYDATAM 143
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
+ RT +H A + VE LL V PV P+H+AA G +I++ L+
Sbjct: 39 DSRTALHWACSAGHTEIVEFLLQLGV----PVNDKDDAGWSPLHIAASAGXDEIVKALLV 94
Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGAD 408
G ++N+ G T A E L GA+
Sbjct: 95 KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%)
Query: 557 ALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIE 616
ALH A G ++V L+ VN D G++PL +AA +G + + L+ GA +
Sbjct: 43 ALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAV 102
Query: 617 NARNETALALA 627
N T L A
Sbjct: 103 NQNGCTPLHYA 113
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 84/210 (40%), Gaps = 34/210 (16%)
Query: 215 QSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVG 274
Q S+ ALH + C+A +V LLQ GV ++ K G WS L +
Sbjct: 38 QDSRTALH--WACSA-------GHTEIVEFLLQLGVPVNDKDDAG-WS-------PLHIA 80
Query: 275 AGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLN 334
A D + V+ GA ++ + Q NG T +H+A N +LL
Sbjct: 81 ASAGXDEIVKALLVK-----GAHVNAVNQ--------NGCTPLHYAASKNRHEIAVMLLE 127
Query: 335 CAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYK 394
+ + Y T + H AA G+ K++ L+ + N + G T + +
Sbjct: 128 GGANPDAK-DHYDATAM---HRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEE 183
Query: 395 HEECLKFLASEGADLGLINYAGQCANSIAK 424
E KFL ++GA + + N + +AK
Sbjct: 184 RVEEAKFLVTQGASIYIENKEEKTPLQVAK 213
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 1/125 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
+ LL GA++ N+ G T + A ++N + ++LE K A+HRAA
Sbjct: 90 KALLVKGAHVNAVNQNGCTPLHYAA-SKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAA 148
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
+G+ +VH L+ N D +G TPL LA + L++ GA IEN +T
Sbjct: 149 KGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTP 208
Query: 624 LALAR 628
L +A+
Sbjct: 209 LQVAK 213
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 540 ILEYALEEG----QKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAA 595
I+E+ L+ G K AG+ LH AA G ++V L+ + VNA + +G TPL AA
Sbjct: 55 IVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAA 114
Query: 596 KSGHGSVCQLLISSGAKCDIENARNETAL 624
+ +L+ GA D ++ + TA+
Sbjct: 115 SKNRHEIAVMLLEGGANPDAKDHYDATAM 143
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
+ RT +H A + VE LL V PV P+H+AA G +I++ L+
Sbjct: 39 DSRTALHWACSAGHTEIVEFLLQLGV----PVNDKDDAGWSPLHIAASAGRDEIVKALLV 94
Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGAD 408
G ++N+ G T A E L GA+
Sbjct: 95 KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%)
Query: 557 ALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIE 616
ALH A G ++V L+ VN D G++PL +AA +G + + L+ GA +
Sbjct: 43 ALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAV 102
Query: 617 NARNETALALA 627
N T L A
Sbjct: 103 NQNGCTPLHYA 113
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 84/210 (40%), Gaps = 34/210 (16%)
Query: 215 QSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVG 274
Q S+ ALH + C+A +V LLQ GV ++ K G WS L +
Sbjct: 38 QDSRTALH--WACSA-------GHTEIVEFLLQLGVPVNDKDDAG-WS-------PLHIA 80
Query: 275 AGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLN 334
A D + V+ GA ++ + Q NG T +H+A N +LL
Sbjct: 81 ASAGRDEIVKALLVK-----GAHVNAVNQ--------NGCTPLHYAASKNRHEIAVMLLE 127
Query: 335 CAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYK 394
+ + Y T + H AA G+ K++ L+ + N + G T + +
Sbjct: 128 GGANPDAK-DHYDATAM---HRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEE 183
Query: 395 HEECLKFLASEGADLGLINYAGQCANSIAK 424
E KFL ++GA + + N + +AK
Sbjct: 184 RVEEAKFLVTQGASIYIENKEEKTPLQVAK 213
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 58/111 (52%), Gaps = 3/111 (2%)
Query: 519 YGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCY 578
+G TA+ + +L N E+ +++L A + K G +H AA+ G D + TL+
Sbjct: 37 FGRTALQVMKLG-NPEIARRLLLRGANPD-LKDRTGNAVIHDAARAGFLDTLQTLLEFQA 94
Query: 579 DVNASDADGYTPLMLAAKSGHGSVCQLLIS-SGAKCDIENARNETALALAR 628
DVN D +G PL LAAK GH V + L+ + + N + +TA LAR
Sbjct: 95 DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR 145
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 6/110 (5%)
Query: 300 MLFQHISPNIL-HNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAA 358
+L + +P++ G +IH A ++ LL D V P+HLAA
Sbjct: 56 LLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQAD----VNIEDNEGNLPLHLAA 111
Query: 359 RLGSAKILRRLIS-AGCNINSRTAAGETAAMICARYKHEECLKFLASEGA 407
+ G +++ L+ N+ R G+TA + Y E + + + GA
Sbjct: 112 KEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
Query: 517 NKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSR 576
N++G+TA+ + LE +L+ + ++G +H AA+ G D + LV
Sbjct: 39 NRFGKTALQVMMFGSPAVALE--LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEH 96
Query: 577 CYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIE--NARNETALALAR 628
DVNA D+ G P+ LA + GH SV L + D+ +A T L LAR
Sbjct: 97 GADVNALDSTGSLPIHLAIREGHSSVVSFL---APESDLHHRDASGLTPLELAR 147
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 305 ISPNILHN-GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSA 363
+ P+ L+ G+T + + + A A+ELL A VQ S T P+H AAR G
Sbjct: 33 VHPDALNRFGKTALQVMMFGSPAVALELLKQGASPN---VQDASGTS--PVHDAARTGFL 87
Query: 364 KILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASE 405
L+ L+ G ++N+ + G + R H + FLA E
Sbjct: 88 DTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE 129
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 5/103 (4%)
Query: 360 LGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCA 419
GS + L+ G + N + A+G + AR + LK L GAD+ ++ G
Sbjct: 51 FGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLP 110
Query: 420 NSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQ 462
+A + +VV + + + +AS +PL Q
Sbjct: 111 IHLAIREGHS-----SVVSFLAPESDLHHRDASGLTPLELARQ 148
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
Query: 517 NKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSR 576
N++G+TA+ + LE +L+ + ++G +H AA+ G D + LV
Sbjct: 41 NRFGKTALQVMMFGSPAVALE--LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEH 98
Query: 577 CYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIE--NARNETALALAR 628
DVNA D+ G P+ LA + GH SV L + D+ +A T L LAR
Sbjct: 99 GADVNALDSTGSLPIHLAIREGHSSVVSFL---APESDLHHRDASGLTPLELAR 149
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 305 ISPNILHN-GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSA 363
+ P+ L+ G+T + + + A A+ELL A VQ S T P+H AAR G
Sbjct: 35 VHPDALNRFGKTALQVMMFGSPAVALELLKQGASPN---VQDASGTS--PVHDAARTGFL 89
Query: 364 KILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASE 405
L+ L+ G ++N+ + G + R H + FLA E
Sbjct: 90 DTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE 131
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 5/103 (4%)
Query: 360 LGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCA 419
GS + L+ G + N + A+G + AR + LK L GAD+ ++ G
Sbjct: 53 FGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLP 112
Query: 420 NSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQ 462
+A + +VV + + + +AS +PL Q
Sbjct: 113 IHLAIREGHS-----SVVSFLAPESDLHHRDASGLTPLELARQ 150
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 100/230 (43%), Gaps = 10/230 (4%)
Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
+G T +H A++ N AV L+N + Y+ P+HLA ++R L++
Sbjct: 8 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 67
Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGA----DLGLINYAGQCANSIAKSSR 427
AG + + G+TAA + ++ CL+ L A DL NY G A +A ++
Sbjct: 68 AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 127
Query: 428 WTLGFQQAVVDSIRSGNIIQSSN-ASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDXX 486
Q+ V + G I + + S SPL+ + N + ++ L++ +++ Q
Sbjct: 128 C----QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHG-ANVNAQMYS 182
Query: 487 XXXXXXXXXXXXXXXXFRLLLHAGANIKLQNKYGETAITLAELNRNGEVL 536
R L+ +GA+ L+N + +T + +A R ++L
Sbjct: 183 GSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL 232
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 4/126 (3%)
Query: 503 FRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYA---LEEGQKGSAGFYALH 559
RLL+ AGA+ +++G+TA LA +R+ L ++ A L+ + G ALH
Sbjct: 62 VRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH 121
Query: 560 RAAKRGDFDLVHTLVSRCYDVNASD-ADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENA 618
A + V L+ R D++A D G +PL+ A ++ S+ QLL+ GA + +
Sbjct: 122 VAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMY 181
Query: 619 RNETAL 624
+AL
Sbjct: 182 SGSSAL 187
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 503 FRLLLHAGANIKLQN-KYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRA 561
+LLL GA+I + K G + + A N N + Q++L++ + +G ALH A
Sbjct: 132 VQLLLERGADIDAVDIKSGRSPLIHAVEN-NSLSMVQLLLQHGANVNAQMYSGSSALHSA 190
Query: 562 AKRGDFDLVHTLVSRCYDVNASDADGYTPLMLA 594
+ RG LV TLV D + + TPLM+A
Sbjct: 191 SGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVA 223
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 554 GFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGY-----TPLMLAAKSGHGSVCQLLIS 608
G LH A +G+ VH LV+ + + D Y TPL LA + SV +LL++
Sbjct: 9 GDTPLHIAVVQGNLPAVHRLVN-LFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 67
Query: 609 SGAKCDIENARNETALALA 627
+GA + +TA LA
Sbjct: 68 AGASPMALDRHGQTAAHLA 86
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 77/201 (38%), Gaps = 32/201 (15%)
Query: 233 AVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFE 292
AV++ SVVRLL+ AG R G + A LA ++ C
Sbjct: 53 AVITTLPSVVRLLVTAGASPMALDRHG------------QTAAHLACEHRSPTC------ 94
Query: 293 SSGAILHMLFQHISPNIL------HNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTY 346
L L +P L ++G T +H A+ V+LLL D +
Sbjct: 95 -----LRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADID---AVD 146
Query: 347 SKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEG 406
K+ P+ A S +++ L+ G N+N++ +G +A + ++ L G
Sbjct: 147 IKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSG 206
Query: 407 ADLGLINYAGQCANSIAKSSR 427
AD L N +A+S R
Sbjct: 207 ADSSLKNCHNDTPLMVARSRR 227
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 97/225 (43%), Gaps = 31/225 (13%)
Query: 431 GFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDXXXXXX 490
G + V+ + G I +N + L ++VD +K L+E ++++ D
Sbjct: 51 GDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVE-NGANINQPDNEGWIP 109
Query: 491 XXXXXXXXXXXXFRLLLHAGANIKLQNKYGETAITLA-----------ELNRNG------ 533
L+ GA++ N G+T + +A E+NR G
Sbjct: 110 LHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAA 169
Query: 534 -EVLEQVILEYA--------LEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASD 584
+ E+++L A + + + +G ALH AA +G +++ L+ YDVN D
Sbjct: 170 RKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKD 229
Query: 585 ADGYTPLMLAAKSGHGSVCQLLISSGAKCDIE--NARNETALALA 627
DG+TPL AA G C++L+ + CD+E N +TA +A
Sbjct: 230 YDGWTPLHAAAHWGKEEACRILVEN--LCDMEAVNKVGQTAFDVA 272
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 561 AAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARN 620
A GD + V L+ R D+N ++ DG T L A + + + L+ +GA +I N
Sbjct: 47 ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGA--NINQPDN 104
Query: 621 ETALAL 626
E + L
Sbjct: 105 EGWIPL 110
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/302 (24%), Positives = 120/302 (39%), Gaps = 29/302 (9%)
Query: 312 NGR--TLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRL 369
+GR T +H A N R V+LLL D V K L P+H A G ++ L
Sbjct: 55 DGRKSTPLHLAAGYNRVRIVQLLLQHGAD----VHAKDKGGLVPLHNACSYGHYEVTELL 110
Query: 370 ISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWT 429
+ G +N+ T A E L S GAD L+N G+ A +A +
Sbjct: 111 LKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPE-- 168
Query: 430 LGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDXXXXX 489
++ + + +++Q++ + D+ +KK + ++ +
Sbjct: 169 --LRERLTYEFKGHSLLQAAREA------------DLAKVKKTLALEIINFKQPQSHETA 214
Query: 490 X--XXXXXXXXXXXXFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEE 547
LLL GAN+ +NK T + +A + +V+E V+ ++ +
Sbjct: 215 LHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVME-VLHKHGAKM 273
Query: 548 GQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLI 607
S G ALHRAA G L+S D + G+T AA+ G+ +V Q+L
Sbjct: 274 NALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFT----AAQMGNEAVQQILS 329
Query: 608 SS 609
S
Sbjct: 330 ES 331
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%)
Query: 538 QVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKS 597
Q++L++ + K G LH A G +++ L+ VNA D +TPL AA
Sbjct: 75 QLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASK 134
Query: 598 GHGSVCQLLISSGAKCDIENARNETALALA 627
VC LL+S GA + N ++A+ +A
Sbjct: 135 NRVEVCSLLLSHGADPTLVNCHGKSAVDMA 164
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 89/249 (35%), Gaps = 46/249 (18%)
Query: 184 LVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVR 243
L +AC G V + L+K G NA+D + L A ++ V
Sbjct: 95 LHNACSYGHYEVTELLLKHGACVNAMDL-------------WQFTPLHEAASKNRVEVCS 141
Query: 244 LLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQ 303
LLL G + G + DM ELR +E G H L Q
Sbjct: 142 LLLSHGADPTLVNCHGKSAVDMAPTPELRERL--------------TYEFKG---HSLLQ 184
Query: 304 HI-SPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFP---------------VQTYS 347
++ +TL I ++ E L+CAV P V +
Sbjct: 185 AAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKN 244
Query: 348 KTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGA 407
K + P+H+AA ++ L G +N+ + G+TA A H + + L S G+
Sbjct: 245 KDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGS 304
Query: 408 DLGLINYAG 416
D +I+ G
Sbjct: 305 DPSIISLQG 313
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 26/54 (48%)
Query: 558 LHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGA 611
LH AA +V L+ DV+A D G PL A GH V +LL+ GA
Sbjct: 62 LHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGA 115
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 573 LVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETAL 624
L+ + +VN + D TPL +AA+ H V ++L GAK + ++ +TAL
Sbjct: 233 LLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTAL 284
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 517 NKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSR 576
N++G+TA+ + LE +L+ + ++G +H AA+ G D + LV
Sbjct: 39 NRFGKTALQVMMFGSTAIALE--LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEH 96
Query: 577 CYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIE--NARNETALALA 627
DVN D G P+ LA + GH +V L A+ D+ +AR T L LA
Sbjct: 97 GADVNVPDGTGALPIHLAVQEGHTAVVSFL---AAESDLHRRDARGLTPLELA 146
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 305 ISPNILHN-GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSA 363
+ P+ L+ G+T + + + A A+ELL A VQ S T P+H AAR G
Sbjct: 33 VHPDALNRFGKTALQVMMFGSTAIALELLKQGASPN---VQDTSGTS--PVHDAARTGFL 87
Query: 364 KILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASE 405
L+ L+ G ++N G + + H + FLA+E
Sbjct: 88 DTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE 129
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 73/168 (43%), Gaps = 9/168 (5%)
Query: 465 DVDALKKLIEWADVDLDEQDXXXXXXXXX--------XXXXXXXXXFRLLLHAGANIKLQ 516
D++ ++ L+EW + DL++ + + +G + +
Sbjct: 23 DLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVT 82
Query: 517 NKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSR 576
++ G + + +A L+ +++ ++L++ G + + LH A ++G F +V L+
Sbjct: 83 SQDGSSPLHVAALHGRADLIP-LLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDS 141
Query: 577 CYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETAL 624
N D G TPL+ A GH + LL+ GA + N + TAL
Sbjct: 142 NAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTAL 189
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%)
Query: 554 GFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKC 613
G LH AA G DL+ L+ + A +AD PL LA + GH V + L+ S AK
Sbjct: 86 GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP 145
Query: 614 DIENARNETALALA 627
+ ++ T L A
Sbjct: 146 NKKDLSGNTPLIYA 159
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 4/108 (3%)
Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
+G + +H A L A + LLL + + + P+HLA + G ++++ L+
Sbjct: 85 DGSSPLHVAALHGRADLIPLLLKHGAN----AGARNADQAVPLHLACQQGHFQVVKCLLD 140
Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCA 419
+ N + +G T + H E + L GA + N G A
Sbjct: 141 SNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTA 188
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%)
Query: 580 VNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALA 627
VN + DG +PL +AA G + LL+ GA NA L LA
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLA 126
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%)
Query: 554 GFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGA 611
G ALH A G ++V LV +VNA+D+DG+TPL AA + VC+ L+ SGA
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 354 IHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLIN 413
+H A G +I++ L+ G N+N+ + G T A + + KFL GA + +
Sbjct: 74 LHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT 133
Query: 414 YA 415
Y+
Sbjct: 134 YS 135
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%)
Query: 554 GFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGA 611
G ALH A G ++V LV +VNA+D+DG+TPL AA + VC+ L+ SGA
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 12/120 (10%)
Query: 308 NILHNGRTLIHHAILCN-NARAVELLLNCAVDKEFPV-----------QTYSKTELRPIH 355
N+ G I H + N + LLL+ +++ EF + + + +H
Sbjct: 16 NLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALH 75
Query: 356 LAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYA 415
A G +I++ L+ G N+N+ + G T A + + KFL GA + + Y+
Sbjct: 76 NAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYS 135
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%)
Query: 554 GFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKC 613
G LH AA+ G ++V L+ DVNA D G TPL LAA GH + ++L+ GA
Sbjct: 47 GLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADV 106
Query: 614 DIENARNETALALA 627
+ ++ +TA ++
Sbjct: 107 NAQDKFGKTAFDIS 120
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 40/70 (57%)
Query: 558 LHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIEN 617
L AA+ G D V L++ DVNA D DG TPL LAA+ GH + ++L+ GA + E+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 618 ARNETALALA 627
T L LA
Sbjct: 78 NFGITPLHLA 87
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
R+L+ GA++ ++ G T + LA + E++E V+L+Y + + + G LH AA
Sbjct: 31 RILMANGADVNALDEDGLTPLHLAAQLGHLEIVE-VLLKYGADVNAEDNFGITPLHLAAI 89
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLL 606
RG ++V L+ DVNA D G T ++ +G+ + ++L
Sbjct: 90 RGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 343 VQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFL 402
V + L P+HLAA+LG +I+ L+ G ++N+ G T + A H E ++ L
Sbjct: 40 VNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVL 99
Query: 403 ASEGADLGLINYAGQCANSIA 423
GAD+ + G+ A I+
Sbjct: 100 LKHGADVNAQDKFGKTAFDIS 120
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
+G T +H A + VE+LL D V + P+HLAA G +I+ L+
Sbjct: 46 DGLTPLHLAAQLGHLEIVEVLLKYGAD----VNAEDNFGITPLHLAAIRGHLEIVEVLLK 101
Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFL 402
G ++N++ G+TA I +E+ + L
Sbjct: 102 HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 90 VTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYAT--TAAVREDHLEILDLLIK 142
+T L LAA G+L +V LL GA+VN + G AA+R HLEI+++L+K
Sbjct: 48 LTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIR-GHLEIVEVLLK 101
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 49/120 (40%), Gaps = 27/120 (22%)
Query: 93 LFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATT-AAVREDHLEILDLLIKXXXXXXXXX 151
L AA AG VR L++ GA+VN G A + HLEI+++L+K
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLK--------- 68
Query: 152 XXXXXTSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDANAIDR 211
G AE + L A RG + +V+ L+K G D NA D+
Sbjct: 69 --------YGADVNAE---------DNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDK 111
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 517 NKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSR 576
N++G+TA+ + LE +L+ + ++G +H AA+ G D + LV
Sbjct: 33 NRFGKTALQVMMFGSTAIALE--LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEH 90
Query: 577 CYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIE--NARNETALALA 627
DVN D G P+ LA + GH +V L A+ D+ +AR T L LA
Sbjct: 91 GADVNVPDGTGALPIHLAVQEGHTAVVSFL---AAESDLHRRDARGLTPLELA 140
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 305 ISPNILHN-GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSA 363
+ P+ L+ G+T + + + A A+ELL A VQ S T P+H AAR G
Sbjct: 27 VHPDALNRFGKTALQVMMFGSTAIALELLKQGASPN---VQDTSGTS--PVHDAARTGFL 81
Query: 364 KILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASE 405
L+ L+ G ++N G + + H + FLA+E
Sbjct: 82 DTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE 123
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 97/245 (39%), Gaps = 42/245 (17%)
Query: 353 PIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLI 412
P+H AA G I L+ AG NI++ + T M A H E +K+L GA +
Sbjct: 14 PLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPK 73
Query: 413 NYAGQ-CANSIAKSSRWTLGFQQAVVDSIRSGNI-IQSSNASRFSPLMFVTQANDVDALK 470
+ G C + AK G + V + +G + + + ++P+++ T+ VD +K
Sbjct: 74 DAEGSTCLHLAAKK-----GHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVK 128
Query: 471 KLIEWADVDLDEQDXXXXXXXXXXXXXXXXXXFRLLLHAGANIKLQNKYGETAITLAELN 530
LLL G++I +++ + A +
Sbjct: 129 ----------------------------------LLLSKGSDINIRDNEENICLHWAAFS 154
Query: 531 RNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTP 590
++ E ++L + G LH AA+ +D V +SR DV + +G TP
Sbjct: 155 GCVDIAE-ILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETP 213
Query: 591 LMLAA 595
L A+
Sbjct: 214 LQCAS 218
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 541 LEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHG 600
+ + +E K S LH AA+ G D+ H LV +++ D TPLM AA++ H
Sbjct: 2 MNFKMEHQNKRSP----LHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHL 57
Query: 601 SVCQLLISSGAKCDIENARNETALALA 627
+ LI +GA D ++A T L LA
Sbjct: 58 EAVKYLIKAGALVDPKDAEGSTCLHLA 84
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 79/178 (44%), Gaps = 5/178 (2%)
Query: 452 SRFSPLMFVTQANDVDALKKLIEWADVDLDEQDXXXXXXXXXXXXXXXXXXFRLLLHAGA 511
++ SPL +A VD L++ A ++D + L+ AGA
Sbjct: 10 NKRSPLHAAAEAGHVDICHMLVQ-AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA 68
Query: 512 NIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVH 571
+ ++ G T + LA + EV++ ++ ++ + G+ + A + DLV
Sbjct: 69 LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVK 128
Query: 572 TLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIE--NARNETALALA 627
L+S+ D+N D + L AA SG + ++L++ AKCD+ N ++ L +A
Sbjct: 129 LLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLA--AKCDLHAVNIHGDSPLHIA 184
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 85/189 (44%), Gaps = 3/189 (1%)
Query: 440 IRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDXXXXXXXXXXXXXXX 499
+++G I + + + +PLM + N ++A+K LI+ A +D +D
Sbjct: 31 VQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIK-AGALVDPKDAEGSTCLHLAAKKGH 89
Query: 500 XXXFRLLLHAGA-NIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYAL 558
+ LL G ++ Q+ G T + A ++ +++ +++L + + + L
Sbjct: 90 YEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLV-KLLLSKGSDINIRDNEENICL 148
Query: 559 HRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENA 618
H AA G D+ L++ D++A + G +PL +AA+ L +S + ++N
Sbjct: 149 HWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNK 208
Query: 619 RNETALALA 627
ET L A
Sbjct: 209 EGETPLQCA 217
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 354 IHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLIN 413
+H AA G I L++A C++++ G++ I AR +C+ S +D+ L N
Sbjct: 148 LHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKN 207
Query: 414 YAG----QCANSIAKSSRWT-LGFQQAVVDS 439
G QCA+ S W+ L +A+ DS
Sbjct: 208 KEGETPLQCAS--LNSQVWSALQMSKALQDS 236
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 550 KGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISS 609
K G L+ A G ++V L+ DVNA DA G+TPL LAA GH + ++L+
Sbjct: 43 KDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKH 102
Query: 610 GAKCDIENARNETALALA 627
GA + ++ +TA ++
Sbjct: 103 GADVNAQDKFGKTAFDIS 120
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
R+L+ GA++ +++YG T + LA + + E++E V+L+ + + GF LH AA
Sbjct: 31 RILMANGADVNAKDEYGLTPLYLATAHGHLEIVE-VLLKNGADVNAVDAIGFTPLHLAAF 89
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLL 606
G ++ L+ DVNA D G T ++ +G+ + ++L
Sbjct: 90 IGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 313 GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISA 372
G T ++ A + VE+LL D V P+HLAA +G +I L+
Sbjct: 47 GLTPLYLATAHGHLEIVEVLLKNGAD----VNAVDAIGFTPLHLAAFIGHLEIAEVLLKH 102
Query: 373 GCNINSRTAAGETAAMICARYKHEECLKFL 402
G ++N++ G+TA I +E+ + L
Sbjct: 103 GADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 16/111 (14%)
Query: 161 GQARPAELLMATDL---IRPQVSVHALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSS 217
GQ +LMA + + + L A G + +V+ L+K G D NA+D +
Sbjct: 25 GQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTP- 83
Query: 218 KPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTG 268
LH A +G + + +LL+ G ++ + + G ++D+ G
Sbjct: 84 ---LH----LAAFIG-----HLEIAEVLLKHGADVNAQDKFGKTAFDISIG 122
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%)
Query: 554 GFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKC 613
G LH AA ++V L+ DVNA D DG TPL LAA GH + ++L+ GA
Sbjct: 47 GNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADV 106
Query: 614 DIENARNETALALA 627
+ ++ +TA ++
Sbjct: 107 NAQDKFGKTAFDIS 120
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
R+L+ GA++ ++ G T + LA + E++E V+L++ + + G LH AA
Sbjct: 31 RILMANGADVNANDRKGNTPLHLAADYDHLEIVE-VLLKHGADVNAHDNDGSTPLHLAAL 89
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLL 606
G ++V L+ DVNA D G T ++ +G+ + ++L
Sbjct: 90 FGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 353 PIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLI 412
P+HLAA +I+ L+ G ++N+ G T + A + H E ++ L GAD+
Sbjct: 50 PLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQ 109
Query: 413 NYAGQCANSIA 423
+ G+ A I+
Sbjct: 110 DKFGKTAFDIS 120
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 313 GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISA 372
G T +H A ++ VE+LL D V + P+HLAA G +I+ L+
Sbjct: 47 GNTPLHLAADYDHLEIVEVLLKHGAD----VNAHDNDGSTPLHLAALFGHLEIVEVLLKH 102
Query: 373 GCNINSRTAAGETAAMICARYKHEECLKFL 402
G ++N++ G+TA I +E+ + L
Sbjct: 103 GADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 357 AARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADL 409
AAR G +R L++ G ++N+ G T + A Y H E ++ L GAD+
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADV 73
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 46/120 (38%), Gaps = 27/120 (22%)
Query: 93 LFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA-AVREDHLEILDLLIKXXXXXXXXX 151
L AA AG VR L++ GA+VN +G A DHLEI+++L+K
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 152 XXXXXTSYLGQARPAELLMATDLIRPQVSVHALVSACFRGFVNVVDTLIKCGVDANAIDR 211
+L A G + +V+ L+K G D NA D+
Sbjct: 78 NDGSTPLHL--------------------------AALFGHLEIVEVLLKHGADVNAQDK 111
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 42/70 (60%)
Query: 558 LHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIEN 617
L AA+ G D V L++ DV A D +G TPL LAA++GH V +LL+ +GA + ++
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQD 69
Query: 618 ARNETALALA 627
+TA ++
Sbjct: 70 KFGKTAFDIS 79
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 343 VQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFL 402
V K P+HLAAR G ++++ L+ AG ++N++ G+TA I +E+ + L
Sbjct: 32 VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 35.8 bits (81), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 357 AARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAG 416
AAR G +R L++ G ++ ++ G T + AR H E +K L GAD+ + G
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 417 QCANSIA 423
+ A I+
Sbjct: 73 KTAFDIS 79
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 550 KGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLL 606
K G LH AA+ G ++V L+ DVNA D G T ++ +G+ + ++L
Sbjct: 35 KDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLE 537
+LLL AGA++ Q+K+G+TA ++ N N ++ E
Sbjct: 56 KLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAE 89
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%)
Query: 554 GFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKC 613
G LH AA ++V L+ DVNA DA G TPL L A GH + ++L+ GA
Sbjct: 47 GLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADV 106
Query: 614 DIENARNETALALA 627
+ ++ +TA ++
Sbjct: 107 NAQDKFGKTAFDIS 120
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 343 VQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFL 402
V K L P+HLAA +I+ L+ G ++N+ A GET + A Y H E ++ L
Sbjct: 40 VNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVL 99
Query: 403 ASEGADLGLINYAGQCANSIA 423
GAD+ + G+ A I+
Sbjct: 100 LKHGADVNAQDKFGKTAFDIS 120
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
R+L+ GA++ ++K G T + LA +N + E++E V+L+ + + G LH A
Sbjct: 31 RILMANGADVNAEDKVGLTPLHLAAMNDHLEIVE-VLLKNGADVNAIDAIGETPLHLVAM 89
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLL 606
G ++V L+ DVNA D G T ++ +G+ + ++L
Sbjct: 90 YGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 313 GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISA 372
G T +H A + ++ VE+LL D V P+HL A G +I+ L+
Sbjct: 47 GLTPLHLAAMNDHLEIVEVLLKNGAD----VNAIDAIGETPLHLVAMYGHLEIVEVLLKH 102
Query: 373 GCNINSRTAAGETAAMICARYKHEECLKFL 402
G ++N++ G+TA I +E+ + L
Sbjct: 103 GADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 18/115 (15%)
Query: 161 GQARPAELLMATDL---IRPQVSVHALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSS 217
GQ +LMA +V + L A + +V+ L+K G D NAID +
Sbjct: 25 GQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAI----G 80
Query: 218 KPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWD--MDTGEE 270
+ LH A+ G + +V +LL+ G ++ + + G ++D +D G E
Sbjct: 81 ETPLH----LVAMYG-----HLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 126
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 60/124 (48%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
R L+ AG +++ +K T + A +N ++++ I + A+ + G LH A +
Sbjct: 26 RELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATR 85
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623
+G +V L+ D + D +G + + LAA+ GH S+ LI+ G D+ + T
Sbjct: 86 QGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTP 145
Query: 624 LALA 627
L A
Sbjct: 146 LMWA 149
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 35/124 (28%)
Query: 540 ILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAK--- 596
+++Y + G +H AA+ G +V L+++ DV+ D +G TPLM AA
Sbjct: 95 LMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTH 154
Query: 597 --------------------------------SGHGSVCQLLISSGAKCDIENARNETAL 624
+G+ +V LL+ +GA D +N + E+AL
Sbjct: 155 SVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESAL 214
Query: 625 ALAR 628
LA+
Sbjct: 215 DLAK 218
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 80/200 (40%), Gaps = 10/200 (5%)
Query: 337 VDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAA-GETAAMICARYKH 395
V+ + V+ K + +H AA +++ IS G ++ T R H
Sbjct: 29 VEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGH 88
Query: 396 EECLKFLASEGADLGLINYAG-QCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRF 454
+ L GAD LI+ G C + A+ G V I G + + +
Sbjct: 89 LSMVVQLMKYGADPSLIDGEGCSCIHLAAQ-----FGHTSIVAYLIAKGQDVDMMDQNGM 143
Query: 455 SPLMFVT-QANDVDALKKLIEW-ADVDLDEQDXXXXXXXXXXXXXXXXXXFRLLLHAGAN 512
+PLM+ + + VD + L+ + V+L ++ LLL AGAN
Sbjct: 144 TPLMWAAYRTHSVDPTRLLLTFNVSVNLGDK-YHKNTALHWAVLAGNTTVISLLLEAGAN 202
Query: 513 IKLQNKYGETAITLAELNRN 532
+ QN GE+A+ LA+ +N
Sbjct: 203 VDAQNIKGESALDLAKQRKN 222
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 91 TALFLAAHAGNLTLVRKLLSLGANVNQKLFRG 122
TAL A AGN T++ LL GANV+ + +G
Sbjct: 179 TALHWAVLAGNTTVISLLLEAGANVDAQNIKG 210
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 558 LHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIEN 617
L AA+ G D V L++ DV A D +G TPL LAA++GH V +LL+ +GA ++
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87
Query: 618 ARNETALALA 627
+TA ++
Sbjct: 88 KFGKTAFDIS 97
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 357 AARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAG 416
AAR G +R L++ G ++ ++ G T + AR H E +K L GAD+ + G
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 417 QCANSIA 423
+ A I+
Sbjct: 91 KTAFDIS 97
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 343 VQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFL 402
V K P+HLAAR G ++++ L+ AG ++ ++ G+TA I +E+ + L
Sbjct: 50 VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLE 537
+LLL AGA++ Q+K+G+TA ++ N N ++ E
Sbjct: 74 KLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAE 107
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 540 ILEYALEEGQ----KGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAA 595
++EY L+ G K G LH A G +++ LV VN +D +TPL AA
Sbjct: 57 VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA 116
Query: 596 KSGHGSVCQLLISSGAKCDIENARNETALALAR 628
G +C+LL+ GA +N T L L +
Sbjct: 117 AKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 149
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 26/54 (48%)
Query: 558 LHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGA 611
LH AA +V L+ DV+A D G PL A GH V +LL+ GA
Sbjct: 46 LHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA 99
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 540 ILEYALEEGQ----KGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAA 595
++EY L+ G K G LH A G +++ LV VN +D +TPL AA
Sbjct: 61 VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA 120
Query: 596 KSGHGSVCQLLISSGAKCDIENARNETALALAR 628
G +C+LL+ GA +N T L L +
Sbjct: 121 AKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 153
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 26/54 (48%)
Query: 558 LHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGA 611
LH AA +V L+ DV+A D G PL A GH V +LL+ GA
Sbjct: 50 LHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA 103
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 540 ILEYALEEGQ----KGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAA 595
++EY L+ G K G LH A G +++ LV VN +D +TPL AA
Sbjct: 59 VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA 118
Query: 596 KSGHGSVCQLLISSGAKCDIENARNETALALAR 628
G +C+LL+ GA +N T L L +
Sbjct: 119 AKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 151
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 26/54 (48%)
Query: 558 LHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGA 611
LH AA +V L+ DV+A D G PL A GH V +LL+ GA
Sbjct: 48 LHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA 101
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%)
Query: 558 LHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIEN 617
L AA+ G D V L + DVNA+D G+TPL LAA GH + ++L+ +GA +
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 618 ARNETALALA 627
T L LA
Sbjct: 78 NTGRTPLHLA 87
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 554 GFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKC 613
G LH AA G ++V L+ DVNA+ G TPL LAA + H + ++L+ GA
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADV 106
Query: 614 DIENARNETALALA 627
+ ++ +TA ++
Sbjct: 107 NAQDKFGKTAFDIS 120
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 504 RLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563
R+L GA++ + +G T + LA + + E++E V+L+ + G+ G LH AA
Sbjct: 31 RILTANGADVNANDYWGHTPLHLAAMLGHLEIVE-VLLKNGADVNATGNTGRTPLHLAAW 89
Query: 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLL 606
++V L+ DVNA D G T ++ +G+ + ++L
Sbjct: 90 ADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%)
Query: 353 PIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLI 412
P+HLAA LG +I+ L+ G ++N+ G T + A H E ++ L GAD+
Sbjct: 50 PLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQ 109
Query: 413 NYAGQCANSIA 423
+ G+ A I+
Sbjct: 110 DKFGKTAFDIS 120
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 313 GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISA 372
G T +H A + + VE+LL D V T P+HLAA +I+ L+
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGAD----VNATGNTGRTPLHLAAWADHLEIVEVLLKH 102
Query: 373 GCNINSRTAAGETAAMICARYKHEECLKFL 402
G ++N++ G+TA I +E+ + L
Sbjct: 103 GADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 91 TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTA-AVREDHLEILDLLIK 142
T L LAA G+L +V LL GA+VN G A DHLEI+++L+K
Sbjct: 49 TPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLK 101
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 357 AARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAG 416
AAR G +R L + G ++N+ G T + A H E ++ L GAD +N G
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGAD---VNATG 77
Query: 417 QCANSIAKSSRW 428
+ + W
Sbjct: 78 NTGRTPLHLAAW 89
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 517 NKYGETAITLAELNRNGEVLEQVILEYALEEGQ----KGSAGFYALHRAAKRGDFDLVHT 572
N GET + +A + G++ +EY L+ G K AG+ LH A G +V
Sbjct: 7 NHRGETLLHIASIK--GDIPS---VEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVEL 61
Query: 573 LVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGA 611
L+ VN + +PL AAK+GH + +LL+S GA
Sbjct: 62 LLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGA 100
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 33/67 (49%)
Query: 558 LHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIEN 617
LH A+ +GD V L+ D N D G+TPL A GH V +LL+ A +
Sbjct: 14 LHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTG 73
Query: 618 ARNETAL 624
+N++ L
Sbjct: 74 YQNDSPL 80
Score = 36.6 bits (83), Expect = 0.049, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 4/112 (3%)
Query: 305 ISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAK 364
I P H G TL+H A + + +VE LL D P+H A G K
Sbjct: 2 IDPFTNHRGETLLHIASIKGDIPSVEYLLQNGSDP----NVKDHAGWTPLHEACNHGHLK 57
Query: 365 ILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAG 416
++ L+ +N+ ++ A+ H + +K L S GA +N G
Sbjct: 58 VVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFG 109
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 534 EVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLML 593
EV++Q + E + Q G ALH A ++ +V L++ +VN+ D+ G+TPL
Sbjct: 35 EVVQQAVKEMN-DPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHC 93
Query: 594 AAKSGHGSVCQLLISSGA 611
AA +C L+ GA
Sbjct: 94 AASCNDTVICMALVQHGA 111
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 42/71 (59%)
Query: 557 ALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIE 616
++H+ A +G+ + T + + +N +D +G+TPLM AA G +V + L+ +GA +
Sbjct: 22 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 81
Query: 617 NARNETALALA 627
E+AL+LA
Sbjct: 82 GKGRESALSLA 92
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 540 ILEYALEEGQK----GSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAA 595
++E+ L+ G G AL A +G D+V L+ DVN D +G TPL+ A
Sbjct: 67 VVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAV 126
Query: 596 KSGHGSVCQLLISSGAKCDIENARNETALALA 627
H ++L+ SGA IE ++ LA
Sbjct: 127 HGNHVKCVKMLLESGADPTIETDSGYNSMDLA 158
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
Query: 183 ALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVV 242
AL AC +G+ ++V L+ CGVD N D P L+ AV + V
Sbjct: 88 ALSLACSKGYTDIVKMLLDCGVDVNEYD---WNGGTPLLY----------AVHGNHVKCV 134
Query: 243 RLLLQAGVKMDIKVRMGAWSWDM 265
++LL++G I+ G S D+
Sbjct: 135 KMLLESGADPTIETDSGYNSMDL 157
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 329 VELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAM 388
VE LL D Q K + LA G I++ L+ G ++N G T +
Sbjct: 68 VEFLLQNGADP----QLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLL 123
Query: 389 ICARYKHEECLKFLASEGAD 408
H +C+K L GAD
Sbjct: 124 YAVHGNHVKCVKMLLESGAD 143
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 4/121 (3%)
Query: 354 IHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLIN 413
+H A G L I IN G T M A + ++FL GAD L+
Sbjct: 23 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 82
Query: 414 YAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLI 473
+ A S+A S G+ V + G + + + +PL++ N V +K L+
Sbjct: 83 KGRESALSLACSK----GYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLL 138
Query: 474 E 474
E
Sbjct: 139 E 139
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 42/71 (59%)
Query: 557 ALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIE 616
++H+ A +G+ + T + + +N +D +G+TPLM AA G +V + L+ +GA +
Sbjct: 6 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 65
Query: 617 NARNETALALA 627
E+AL+LA
Sbjct: 66 GKGRESALSLA 76
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 540 ILEYALEEGQK----GSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAA 595
++E+ L+ G G AL A +G D+V L+ DVN D +G TPL+ A
Sbjct: 51 VVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAV 110
Query: 596 KSGHGSVCQLLISSGAKCDIENARNETALALA 627
H ++L+ SGA IE ++ LA
Sbjct: 111 HGNHVKCVKMLLESGADPTIETDSGYNSMDLA 142
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
Query: 183 ALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVV 242
AL AC +G+ ++V L+ CGVD N D P L+ AV + V
Sbjct: 72 ALSLACSKGYTDIVKMLLDCGVDVNEYD---WNGGTPLLY----------AVHGNHVKCV 118
Query: 243 RLLLQAGVKMDIKVRMGAWSWDM 265
++LL++G I+ G S D+
Sbjct: 119 KMLLESGADPTIETDSGYNSMDL 141
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 329 VELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAM 388
VE LL D Q K + LA G I++ L+ G ++N G T +
Sbjct: 52 VEFLLQNGADP----QLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLL 107
Query: 389 ICARYKHEECLKFLASEGAD 408
H +C+K L GAD
Sbjct: 108 YAVHGNHVKCVKMLLESGAD 127
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 4/121 (3%)
Query: 354 IHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLIN 413
+H A G L I IN G T M A + ++FL GAD L+
Sbjct: 7 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 66
Query: 414 YAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLI 473
+ A S+A S G+ V + G + + + +PL++ N V +K L+
Sbjct: 67 KGRESALSLACSK----GYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLL 122
Query: 474 E 474
E
Sbjct: 123 E 123
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 60/126 (47%), Gaps = 6/126 (4%)
Query: 506 LLHAGA-NIKLQNKYGETAITLAELN--RNGEVLEQVILEYALEE--GQKGSAGFYALHR 560
LL +G + QN+ G + I L L + + +E V+ + L + AG AL
Sbjct: 130 LLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALML 189
Query: 561 AAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARN 620
A G D+V L++ DVN D DG T LM A + GH + LL++ + CDI
Sbjct: 190 AVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPS-CDISLTDR 248
Query: 621 ETALAL 626
+ + AL
Sbjct: 249 DGSTAL 254
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 6/112 (5%)
Query: 312 NGRTLIHHAILCNNARAVELLLN---CAVDKEFPVQTYSKTELRPIHLAARLGSAKILRR 368
NG T +H+++ N V+ LL+ C VDK+ YS L + + + +
Sbjct: 110 NGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRA-GYSPIMLTALATLKTQDDIETVLQ 168
Query: 369 LISAGCNINSRTA-AGETAAMICARYKHEECLKFLASEGADLGLINYAGQCA 419
L G NIN++ + AG+TA M+ + + +K L + AD+ + + G A
Sbjct: 169 LFRLG-NINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTA 219
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 42/71 (59%)
Query: 557 ALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIE 616
++H+ A +G+ + T + + +N +D +G+TPLM AA G +V + L+ +GA +
Sbjct: 4 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 63
Query: 617 NARNETALALA 627
E+AL+LA
Sbjct: 64 GKGRESALSLA 74
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 540 ILEYALEEGQK----GSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAA 595
++E+ L+ G G AL A +G D+V L+ DVN D +G TPL+ A
Sbjct: 49 VVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAV 108
Query: 596 KSGHGSVCQLLISSGAKCDIENARNETALALA 627
H ++L+ SGA IE ++ LA
Sbjct: 109 HGNHVKCVKMLLESGADPTIETDSGYNSMDLA 140
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
Query: 183 ALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVV 242
AL AC +G+ ++V L+ CGVD N D P L+ AV + V
Sbjct: 70 ALSLACSKGYTDIVKMLLDCGVDVNEYD---WNGGTPLLY----------AVHGNHVKCV 116
Query: 243 RLLLQAGVKMDIKVRMGAWSWDM 265
++LL++G I+ G S D+
Sbjct: 117 KMLLESGADPTIETDSGYNSMDL 139
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 329 VELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAM 388
VE LL D Q K + LA G I++ L+ G ++N G T +
Sbjct: 50 VEFLLQNGADP----QLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLL 105
Query: 389 ICARYKHEECLKFLASEGAD 408
H +C+K L GAD
Sbjct: 106 YAVHGNHVKCVKMLLESGAD 125
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 4/121 (3%)
Query: 354 IHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLIN 413
+H A G L I IN G T M A + ++FL GAD L+
Sbjct: 5 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 64
Query: 414 YAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLI 473
+ A S+A S G+ V + G + + + +PL++ N V +K L+
Sbjct: 65 KGRESALSLACSK----GYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLL 120
Query: 474 E 474
E
Sbjct: 121 E 121
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 313 GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISA 372
G + +H A + E+LL V ++ +K + P+H+AA G A I+ L+
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRD----ARTKVDRTPLHMAASEGHANIVEVLLKH 89
Query: 373 GCNINSRTAAGETAAMICARYKHEECLKFLASEGADL 409
G ++N++ TA + H+E ++ L GAD+
Sbjct: 90 GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV 126
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%)
Query: 538 QVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKS 597
+V+L + + LH AA G ++V L+ DVNA D T L A +
Sbjct: 51 EVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH 110
Query: 598 GHGSVCQLLISSGAKCDIENARNETALALA 627
H V +LLI GA ++ +TA ++
Sbjct: 111 NHQEVVELLIKYGADVHTQSKFCKTAFDIS 140
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%)
Query: 554 GFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKC 613
G LH AA+ G F L+ +A TPL +AA GH ++ ++L+ GA
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Query: 614 DIENARNETALALA 627
+ ++ TAL A
Sbjct: 94 NAKDMLKMTALHWA 107
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 560 RAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENAR 619
AA+ G D V L++ +D G +PL LAA+ GH S ++L+ +G D
Sbjct: 8 EAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKV 66
Query: 620 NETALALA 627
+ T L +A
Sbjct: 67 DRTPLHMA 74
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 15/97 (15%)
Query: 176 RPQVSVHALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVV 235
R +V L A G N+V+ L+K G D NA D + + AL A
Sbjct: 63 RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKM-------------TALHWATE 109
Query: 236 SRQISVVRLLLQAGVKMDIKVRMGAWSWD--MDTGEE 270
VV LL++ G + + + ++D +D G E
Sbjct: 110 HNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNE 146
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%)
Query: 552 SAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGA 611
G LH AA G +++ L+ + D+NA D TPL+ A GH S +LL+S GA
Sbjct: 33 EGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 92
Query: 612 KCDIENARNETAL 624
++ TAL
Sbjct: 93 DKTVKGPDGLTAL 105
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 352 RPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGAD 408
+P+H AA G +IL L+ G +IN+ T + H C+K L S+GAD
Sbjct: 37 KPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD 93
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%)
Query: 561 AAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARN 620
A K GD D V V++ DVN + G PL AA G + + L+ GA + + +
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 68
Query: 621 ETAL 624
T L
Sbjct: 69 ITPL 72
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%)
Query: 552 SAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGA 611
G LH AA G +++ L+ + D+NA D TPL+ A GH S +LL+S GA
Sbjct: 38 EGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 97
Query: 612 KCDIENARNETAL 624
++ TA
Sbjct: 98 DKTVKGPDGLTAF 110
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 352 RPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGAD 408
+P+H AA G +IL L+ G +IN+ T + H C+K L S+GAD
Sbjct: 42 KPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD 98
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%)
Query: 561 AAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARN 620
A K GD D V V++ DVN + G PL AA G + + L+ GA + + +
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 73
Query: 621 ETAL 624
T L
Sbjct: 74 ITPL 77
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 554 GFYALHRAAKRGDFDLVHTLV-SRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAK 612
G ALH AA+ + +V LV + + + D DG TP+ LAA+ G V LI GA
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGAS 338
Query: 613 CDIENARNETALALAR 628
+ +A + TA LA+
Sbjct: 339 VEAVDATDHTARQLAQ 354
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Query: 311 HNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLI 370
+ GRT +H+A +N V+ L+ + KT PI LAA+ G +++ LI
Sbjct: 277 YKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKT---PIXLAAQEGRIEVVXYLI 333
Query: 371 SAGCNINSRTAAGETAAMICARYKHEECLKFL 402
G ++ + A TA + H +
Sbjct: 334 QQGASVEAVDATDHTARQLAQANNHHNIVDIF 365
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 354 IHLAARLGSAKILRRLI-SAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLI 412
+H AA++ + I++ L+ G N + + G+T + A+ E + +L +GA + +
Sbjct: 283 LHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAV 342
Query: 413 NYAGQCANSIAKSS 426
+ A +A+++
Sbjct: 343 DATDHTARQLAQAN 356
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 311 HNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLI 370
++G T +H A++ +A V LL + D P T +T P+HLA +A +L L+
Sbjct: 156 YDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRT---PLHLAVEAQAASVLELLL 212
Query: 371 SAGCNINSRTAAGETA 386
AG + +R G T
Sbjct: 213 KAGADPTARMYGGRTP 228
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 309 ILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRR 368
+ +G T +H A++ + ++ LL + E+ + + +HLAA LG A + +
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEY-LDLQNDLGQTALHLAAILGEASTVEK 63
Query: 369 LISAGCNINSRTAAGETAAMICARYKHEEC 398
L +AG + G TA + R + C
Sbjct: 64 LYAAGAGVLVAERGGHTALHLACRVRAHTC 93
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 554 GFYALHRAAKRGDFDLVHTLVSRCYDVNASDAD-GYTPLMLAAKSGHGSVCQLLISSGA 611
G LH A D ++V L D+N + G TPL LA ++ SV +LL+ +GA
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 311 HNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLI 370
++G T +H A++ +A V LL + D P T +T P+HLA +A +L L+
Sbjct: 156 YDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRT---PLHLAVEAQAASVLELLL 212
Query: 371 SAGCNINSRTAAGETA 386
AG + +R G T
Sbjct: 213 KAGADPTARMYGGRTP 228
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 309 ILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRR 368
+ +G T +H A++ + ++ LL + E+ + + +HLAA LG A + +
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEY-LDLQNDLGQTALHLAAILGEASTVEK 63
Query: 369 LISAGCNINSRTAAGETAAMICARYKHEEC 398
L +AG + G TA + R + C
Sbjct: 64 LYAAGAGVLVAERGGHTALHLACRVRAHTC 93
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 554 GFYALHRAAKRGDFDLVHTLVSRCYDVNASDAD-GYTPLMLAAKSGHGSVCQLLISSGA 611
G LH A D ++V L D+N + G TPL LA ++ SV +LL+ +GA
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%)
Query: 554 GFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKC 613
G AL A K + L+S+ +VN D G TPLM + G+ + L+ GA
Sbjct: 68 GSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANV 127
Query: 614 DIENARNETALALA 627
+ N ET L +A
Sbjct: 128 NDRNLEGETPLIVA 141
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%)
Query: 353 PIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLI 412
P+ + G +++ L+ G N+N R GET ++ ++Y E +K L GAD+
Sbjct: 104 PLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISAR 163
Query: 413 NYAGQCANSIAK 424
+ G A + A+
Sbjct: 164 DLTGLTAEASAR 175
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 565 GDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETAL 624
G ++ + L+ +VN + +G TPL++A+K G + + L+ GA + TA
Sbjct: 112 GYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAE 171
Query: 625 ALAR 628
A AR
Sbjct: 172 ASAR 175
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 91 TALFLAAHAGNLTLVRKLLSLGANVNQKLFRG 122
TAL A L + KLLS G+NVN K F G
Sbjct: 70 TALIWAVKNNRLGIAEKLLSKGSNVNTKDFSG 101
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 91 TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYATTAAVR 130
T L +A+ G +V+KLL LGA+++ + G A+ R
Sbjct: 136 TPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASAR 175
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 579 DVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALA 627
D+N D G++PL A + G +V ++LI GA+ ++ N ++T L LA
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLA 74
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 549 QKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLIS 608
Q GF LH A + G +V L+ R +N + TPL LAA GH + Q L+
Sbjct: 29 QGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQ 88
Query: 609 SGAKCDIENARNE 621
K DI NA NE
Sbjct: 89 Y--KADI-NAVNE 98
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%)
Query: 557 ALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIE 616
LH AA G D+V L+ D+NA + G PL A G V + L+++GA I
Sbjct: 70 PLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSIC 129
Query: 617 NARNETALALAR 628
N E + A+
Sbjct: 130 NKYGEMPVDKAK 141
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 38/84 (45%)
Query: 343 VQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFL 402
+ ++ + P+HLAA G I+++L+ +IN+ G + ++ + L
Sbjct: 60 INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDL 119
Query: 403 ASEGADLGLINYAGQCANSIAKSS 426
+ GA + + N G+ AK+
Sbjct: 120 VANGALVSICNKYGEMPVDKAKAP 143
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 579 DVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALA 627
D+N D G++PL A + G +V ++LI GA+ ++ N ++T L LA
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLA 79
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 549 QKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLIS 608
Q GF LH A + G +V L+ R +N + TPL LAA GH + Q L+
Sbjct: 34 QGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQ 93
Query: 609 SGAKCDIENARNE 621
K DI NA NE
Sbjct: 94 Y--KADI-NAVNE 103
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%)
Query: 557 ALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIE 616
LH AA G D+V L+ D+NA + G PL A G V + L+++GA I
Sbjct: 75 PLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSIC 134
Query: 617 NARNETALALAR 628
N E + A+
Sbjct: 135 NKYGEMPVDKAK 146
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 38/84 (45%)
Query: 343 VQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFL 402
+ ++ + P+HLAA G I+++L+ +IN+ G + ++ + L
Sbjct: 65 INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDL 124
Query: 403 ASEGADLGLINYAGQCANSIAKSS 426
+ GA + + N G+ AK+
Sbjct: 125 VANGALVSICNKYGEMPVDKAKAP 148
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%)
Query: 557 ALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIE 616
AL A+ G D+V L+ R D+N D +G TPL+ A + H + L++ GA E
Sbjct: 72 ALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTE 131
Query: 617 NARNETALALA 627
T + LA
Sbjct: 132 ADSGYTPMDLA 142
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 557 ALHRAAKRGDFDLVHTLVSRCYD-VNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDI 615
++H+ A +G+ D + + + + VN D G+TPL+ A+ G + L+ GA I
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 616 ENARNETALALA 627
E+AL+LA
Sbjct: 65 LAKERESALSLA 76
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 34/170 (20%), Positives = 69/170 (40%), Gaps = 36/170 (21%)
Query: 438 DSIRSG-NIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDXXXXXXXXXXXX 496
+ +R G N++ + F+PL++ + +++ ++ L+EW
Sbjct: 20 EHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW--------------------- 58
Query: 497 XXXXXXFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFY 556
GA+ + K E+A++LA +++ ++LE ++ G
Sbjct: 59 -------------GADPHILAKERESALSLASTGGYTDIV-GLLLERDVDINIYDWNGGT 104
Query: 557 ALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLL 606
L A + V L++R D+ GYTP+ LA G+ V Q++
Sbjct: 105 PLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Query: 557 ALHRAAKRGDFDLVHTLVSRCYD-VNASDADGYTPLMLAAKSGHGSVCQLLISS-GAKCD 614
LHRAA G L+ L VN D G+TPL A GHG LL+ GA+ D
Sbjct: 143 PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD 202
Query: 615 IENARNETALALARXXXXXXXXXXVILDELALTL 648
+ + + A +A ++D+LA L
Sbjct: 203 LVDNKGAKAEDVALNEQVKKFFLNNVVDKLAAAL 236
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 553 AGFYALHRAAKRGDFDLVHTLVSRCY--DVNASDADGYTPLMLAAKSGHGSVCQLLISSG 610
+G+ H A G+ ++V +L R D+N G T L LA V Q LI +G
Sbjct: 71 SGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENG 130
Query: 611 AKCDIENARNETAL 624
A I++ N+ L
Sbjct: 131 ASVRIKDKFNQIPL 144
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 354 IHLAARLG---SAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLG 410
+HLA ++ S ++ +I G +++++ A G TA A Y +CLK L A +G
Sbjct: 175 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 234
Query: 411 LINYAGQCANSIAK 424
+N AG+ A IA+
Sbjct: 235 TVNEAGETALDIAR 248
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 354 IHLAARLG---SAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLG 410
+HLA ++ S ++ +I G +++++ A G TA A Y +CLK L A +G
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 253
Query: 411 LINYAGQCANSIAK 424
+N AG+ A IA+
Sbjct: 254 TVNEAGETALDIAR 267
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%)
Query: 557 ALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIE 616
AL A+ G D+V L+ R D+N D +G TPL+ A H + L++ GA E
Sbjct: 72 ALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTE 131
Query: 617 NARNETALALA 627
T + LA
Sbjct: 132 ADSGYTPMDLA 142
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 557 ALHRAAKRGDFDLVHTLVSRCYD-VNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDI 615
++H+ A +G+ D + + + + VN D G+TPL+ A+ G + L+ GA I
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 616 ENARNETALALA 627
E+AL+LA
Sbjct: 65 LAKERESALSLA 76
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 33/173 (19%), Positives = 72/173 (41%), Gaps = 42/173 (24%)
Query: 438 DSIRSG-NIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDXXXXXXXXXXXX 496
+ +R G N++ + F+PL++ + +++ ++ L+EW
Sbjct: 20 EHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW--------------------- 58
Query: 497 XXXXXXFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVI---LEYALEEGQKGSA 553
GA+ + K E+A++LA +++ ++ ++ + + G+
Sbjct: 59 -------------GADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTP 105
Query: 554 GFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLL 606
YA+H + V L++R D+ GYTP+ LA G+ V Q++
Sbjct: 106 LLYAVHGNHVK----CVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 557 ALHRAAKRGDFDLVHTLVSRCYD-VNASDADGYTPLMLAAKSGHGSVCQLLISS-GAKCD 614
LHRAA G L+ L VN D G+TPL A GHG LL+ GA+ D
Sbjct: 143 PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD 202
Query: 615 IENARNETA 623
+ + + A
Sbjct: 203 LVDNKGAKA 211
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 553 AGFYALHRAAKRGDFDLVHTLVSRCY--DVNASDADGYTPLMLAAKSGHGSVCQLLISSG 610
+G+ H A G+ ++V +L R D+N G T L LA V Q LI +G
Sbjct: 71 SGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENG 130
Query: 611 AKCDIENARNETAL 624
A I++ N+ L
Sbjct: 131 ASVRIKDKFNQIPL 144
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 38.5 bits (88), Expect = 0.015, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 8/124 (6%)
Query: 511 ANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLV 570
A + QN +T + LA + E+ E +L + + G LH A ++G V
Sbjct: 36 AFLNFQNNLQQTPLHLAVITNQPEIAE-ALLGAGCDPELRDFRGNTPLHLACEQGCLASV 94
Query: 571 HTLVSRCYD------VNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARN-ETA 623
L C + A++ +G+T L LA+ G+ + +LL+S GA + + N TA
Sbjct: 95 GVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTA 154
Query: 624 LALA 627
L LA
Sbjct: 155 LHLA 158
Score = 33.1 bits (74), Expect = 0.62, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 39/86 (45%)
Query: 508 HAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDF 567
H + +K N G T + LA ++ ++E ++ A Q+ G ALH A +
Sbjct: 105 HLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNP 164
Query: 568 DLVHTLVSRCYDVNASDADGYTPLML 593
DLV L+ DVN GY+P L
Sbjct: 165 DLVSLLLKCGADVNRVTYQGYSPYQL 190
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 354 IHLAARLGSAKILRRLISAGCNINSRTAA-GETAAMICARYKHEECLKFLASEGADLGLI 412
+HLA+ G I+ L+S G ++N++ G TA + ++ + + L GAD+ +
Sbjct: 121 LHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRV 180
Query: 413 NYAG 416
Y G
Sbjct: 181 TYQG 184
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 91 TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYA 124
TAL LA N LV LL GA+VN+ ++GY+
Sbjct: 153 TALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 186
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 312 NGRTLIHHAILCNNARAVELLLNCAVD-KEFPVQTYSKTEL 351
NGRT +H A+ N V LLL C D Q YS +L
Sbjct: 150 NGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQL 190
Score = 29.6 bits (65), Expect = 6.5, Method: Composition-based stats.
Identities = 34/151 (22%), Positives = 58/151 (38%), Gaps = 18/151 (11%)
Query: 233 AVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFE 292
AV++ Q + LL AG +++ G + + G+ C T
Sbjct: 52 AVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTT-------- 103
Query: 293 SSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELR 352
LH + + + +NG T +H A + VELL++ D +T L
Sbjct: 104 ---PHLHSILKATN----YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTAL- 155
Query: 353 PIHLAARLGSAKILRRLISAGCNINSRTAAG 383
HLA L + ++ L+ G ++N T G
Sbjct: 156 --HLAVDLQNPDLVSLLLKCGADVNRVTYQG 184
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 38.5 bits (88), Expect = 0.015, Method: Composition-based stats.
Identities = 40/177 (22%), Positives = 72/177 (40%), Gaps = 6/177 (3%)
Query: 457 LMFVTQANDVDALKKLIEWADVDLDEQDXXXXXXXXXXXXXXXXXXFRLLLHAGANIKLQ 516
L+ D +K++++ +DE D + L+ GA+I LQ
Sbjct: 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ 68
Query: 517 NKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSR 576
N ++ A E+L ++ + + G AL AA++G D V L+
Sbjct: 69 NSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLED 128
Query: 577 CY-DVNASDADGYTPLMLAAKSGHGS-----VCQLLISSGAKCDIENARNETALALA 627
D++ + GYT L+ A G+ + +LL+ +GA I++ TA+ A
Sbjct: 129 GREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYA 185
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 557 ALHRAAKRGDFDLVHTLVS-RCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDI 615
AL AA + D V ++ Y V+ D +G TPL +A + + + LI GA ++
Sbjct: 8 ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL 67
Query: 616 ENARNET 622
+N+ +++
Sbjct: 68 QNSISDS 74
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 557 ALHRAAKRGDFDLVHTLVSRCYD-VNASDADGYTPLMLAAKSGHGSVCQLLISS-GAKCD 614
LHRAA G L+ L VN D G+TPL A GHG LL+ GA+ D
Sbjct: 143 PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD 202
Query: 615 IENARNETA 623
+ + + A
Sbjct: 203 LVDNKGAKA 211
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 553 AGFYALHRAAKRGDFDLVHTLVSRCY--DVNASDADGYTPLMLAAKSGHGSVCQLLISSG 610
+G+ H A G+ ++V +L R D+N G T L LA V Q LI +G
Sbjct: 71 SGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENG 130
Query: 611 AKCDIENARNETAL 624
A I++ N+ L
Sbjct: 131 ASVRIKDKFNQIPL 144
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 38.1 bits (87), Expect = 0.018, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 8/124 (6%)
Query: 511 ANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLV 570
A + QN +T + LA + E+ E +L + + G LH A ++G V
Sbjct: 33 AFLNFQNNLQQTPLHLAVITNQPEIAE-ALLGAGCDPELRDFRGNTPLHLACEQGCLASV 91
Query: 571 HTLVSRCYD------VNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARN-ETA 623
L C + A++ +G+T L LA+ G+ + +LL+S GA + + N TA
Sbjct: 92 GVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTA 151
Query: 624 LALA 627
L LA
Sbjct: 152 LHLA 155
Score = 32.7 bits (73), Expect = 0.68, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 39/86 (45%)
Query: 508 HAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDF 567
H + +K N G T + LA ++ ++E ++ A Q+ G ALH A +
Sbjct: 102 HLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNP 161
Query: 568 DLVHTLVSRCYDVNASDADGYTPLML 593
DLV L+ DVN GY+P L
Sbjct: 162 DLVSLLLKCGADVNRVTYQGYSPYQL 187
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 354 IHLAARLGSAKILRRLISAGCNINSRTAA-GETAAMICARYKHEECLKFLASEGADLGLI 412
+HLA+ G I+ L+S G ++N++ G TA + ++ + + L GAD+ +
Sbjct: 118 LHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRV 177
Query: 413 NYAG 416
Y G
Sbjct: 178 TYQG 181
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 91 TALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYA 124
TAL LA N LV LL GA+VN+ ++GY+
Sbjct: 150 TALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 183
Score = 30.0 bits (66), Expect = 5.0, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 312 NGRTLIHHAILCNNARAVELLLNCAVD-KEFPVQTYSKTEL 351
NGRT +H A+ N V LLL C D Q YS +L
Sbjct: 147 NGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQL 187
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 34/151 (22%), Positives = 58/151 (38%), Gaps = 18/151 (11%)
Query: 233 AVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFE 292
AV++ Q + LL AG +++ G + + G+ C T
Sbjct: 49 AVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTT-------- 100
Query: 293 SSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELR 352
LH + + + +NG T +H A + VELL++ D +T L
Sbjct: 101 ---PHLHSILKATN----YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTAL- 152
Query: 353 PIHLAARLGSAKILRRLISAGCNINSRTAAG 383
HLA L + ++ L+ G ++N T G
Sbjct: 153 --HLAVDLQNPDLVSLLLKCGADVNRVTYQG 181
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 553 AGFYALHRAAKRGDFDLVHTLVSRC-YDVNASDADGYTPLMLAAKSGHGSVCQLLISSGA 611
AG AL+ A G D+V L ++ ++N + G T L AA G+ + QLL++ GA
Sbjct: 105 AGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGA 164
Query: 612 KCDIENARNETALALA 627
+ D+ N + A A
Sbjct: 165 RTDLRNIEKKLAFDXA 180
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 558 LHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISS-GAKCDIE 616
LH AAKRG+ + + VN D G T L A GH + + L + + + +
Sbjct: 77 LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQ 136
Query: 617 NARNETALALA 627
N +TAL A
Sbjct: 137 NKLGDTALHAA 147
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 517 NKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSR 576
+K G TA+ A + +++E + + +E Q+ G ALH AA +G D+V L+++
Sbjct: 103 DKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAK 162
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
Query: 503 FRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAA 562
R LL AGAN N YG I + + + V E ++L A + +H AA
Sbjct: 28 VRALLEAGANPNAPNSYGRRPIQVMMMG-SARVAELLLLHGAEPNCADPATLTRPVHDAA 86
Query: 563 KRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLL 606
+ G D + L ++ DA G P+ LA + GH V + L
Sbjct: 87 REGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 50/129 (38%), Gaps = 18/129 (13%)
Query: 280 DYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLL------ 333
D+ T A E A+L +PN GR I ++ +AR ELLL
Sbjct: 14 DWLATAAARGRVEEVRALLEAGANPNAPNSY--GRRPIQ-VMMMGSARVAELLLLHGAEP 70
Query: 334 NCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARY 393
NCA T RP+H AAR G L L AG ++ R A G +
Sbjct: 71 NCA---------DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEEL 121
Query: 394 KHEECLKFL 402
H + ++L
Sbjct: 122 GHRDVARYL 130
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 339 KEFPVQTYSKTELRPIHLAAR---LGSAKILRRLISAGCNINSRTAAGETAAMICARYKH 395
++ P+ + + +HLA R S I+ L+ N++ +T G TA C +
Sbjct: 158 EKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDN 217
Query: 396 EECLKFLASEGADLGLINYAGQCANSIAK 424
ECLK L A + + N +G+ IAK
Sbjct: 218 AECLKLLLRGKASIEIANESGETPLDIAK 246
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 36.2 bits (82), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 54/122 (44%)
Query: 506 LLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRG 565
LL AGA+ Q+ G T + A V + ++ A + G L AA+
Sbjct: 70 LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA 129
Query: 566 DFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALA 625
+V L++ D+NA+D G T L AA + +L+ A D ++ ++ET L
Sbjct: 130 IEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLF 189
Query: 626 LA 627
LA
Sbjct: 190 LA 191
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 313 GRTLIHHAILCNNARAVELLL-NCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLIS 371
GRT +H A+ + ++LL N A + + + T P+ LAARL ++ LI+
Sbjct: 84 GRTPLHAAVAADAMGVFQILLRNRATN--LNARMHDGT--TPLILAARLAIEGMVEDLIT 139
Query: 372 AGCNINSRTAAGETAAMICARYKHEECLKFL 402
A +IN+ +G+TA A + E + L
Sbjct: 140 ADADINAADNSGKTALHWAAAVNNTEAVNIL 170
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%)
Query: 552 SAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGA 611
++G ALH AA + + V+ L+ + +A D TPL LAA+ G + L+ + A
Sbjct: 149 NSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFA 208
Query: 612 KCDI 615
+I
Sbjct: 209 NREI 212
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%)
Query: 506 LLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRG 565
LL A A+ +Q+ G T + A V + +I A + + G L AA+
Sbjct: 76 LLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA 135
Query: 566 DFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALA 625
++ L++ DVNA D G + L AA + +L+ +GA D++N R ET L
Sbjct: 136 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 195
Query: 626 LA 627
LA
Sbjct: 196 LA 197
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 32/77 (41%)
Query: 535 VLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLA 594
V+ I + A Q G ALH AA+ D L+ D N D G TPL A
Sbjct: 38 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 97
Query: 595 AKSGHGSVCQLLISSGA 611
+ V Q+LI + A
Sbjct: 98 VSADAQGVFQILIRNRA 114
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 14/63 (22%)
Query: 579 DVNASDADGYTPLMLAAKSGHG-------------SVCQLLISSGAKCDIENARN-ETAL 624
DVN DG+TPLM+A+ SG G +V I GA + R ETAL
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61
Query: 625 ALA 627
LA
Sbjct: 62 HLA 64
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%)
Query: 506 LLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRG 565
LL A A+ +Q+ G T + A V + +I A + + G L AA+
Sbjct: 44 LLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA 103
Query: 566 DFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALA 625
++ L++ DVNA D G + L AA + +L+ +GA D++N R ET L
Sbjct: 104 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 163
Query: 626 LA 627
LA
Sbjct: 164 LA 165
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 32/77 (41%)
Query: 535 VLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLA 594
V+ I + A Q G ALH AA+ D L+ D N D G TPL A
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 65
Query: 595 AKSGHGSVCQLLISSGA 611
+ V Q+LI + A
Sbjct: 66 VSADAQGVFQILIRNRA 82
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 35.8 bits (81), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%)
Query: 506 LLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRG 565
LL A A+ +Q+ G T + A V + +I A + + G L AA+
Sbjct: 76 LLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA 135
Query: 566 DFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALA 625
++ L++ DVNA D G + L AA + +L+ +GA D++N R ET L
Sbjct: 136 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 195
Query: 626 LA 627
LA
Sbjct: 196 LA 197
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 31/77 (40%)
Query: 535 VLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLA 594
V+ I + A Q G ALH AA D L+ D N D G TPL A
Sbjct: 38 VISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAA 97
Query: 595 AKSGHGSVCQLLISSGA 611
+ V Q+LI + A
Sbjct: 98 VSADAQGVFQILIRNRA 114
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 579 DVNASDADGYTPLMLAAKSGHG 600
DVN DG+TPLM+A+ SG G
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGG 23
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 35.8 bits (81), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 70/194 (36%), Gaps = 64/194 (32%)
Query: 455 SPLMFVTQANDVDALKKLIEWADVDLDEQDXXXXXXXXXXXXXXXXXXFRLLLHAGANIK 514
SPL+ + NDV AL KL+++ G +
Sbjct: 5 SPLLLAAKENDVQALSKLLKF---------------------------------EGCEVH 31
Query: 515 LQNKYGETAITLAELNRNGEVLEQVILEYALE-----------EGQKGSAGFYALHRAAK 563
+ GETA+ +A L N E V++E A E EGQ ALH A
Sbjct: 32 QRGAMGETALHIAALYDNLEA-AMVLMEAAPELVFEPMTSELYEGQT------ALHIAVI 84
Query: 564 RGDFDLVHTLVSRCYDVNASDAD-------------GYTPLMLAAKSGHGSVCQLLISSG 610
+ +LV L++R V+A G PL AA G + +LLI G
Sbjct: 85 NQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHG 144
Query: 611 AKCDIENARNETAL 624
A +++ T L
Sbjct: 145 ADIRAQDSLGNTVL 158
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 353 PIHLAARLGSAKILRRLIS-AGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGL 411
P+ LAA+ + L +L+ GC ++ R A GETA I A Y + E L +L
Sbjct: 6 PLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVF 65
Query: 412 IN-----YAGQCANSIA 423
Y GQ A IA
Sbjct: 66 EPMTSELYEGQTALHIA 82
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 310 LHNGRTLIHHAILCNNARAVELLL----NCAVDKEFPVQTYSKTEL-----RPIHLAARL 360
L+ G+T +H A++ N V LL + + V Y L P+ AA +
Sbjct: 72 LYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACV 131
Query: 361 GSAKILRRLISAGCNINSRTAAGETAAMI 389
GS +I+R LI G +I ++ + G T I
Sbjct: 132 GSEEIVRLLIEHGADIRAQDSLGNTVLHI 160
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%)
Query: 506 LLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRG 565
LL A A+ +Q+ G T + A V + +I A + + G L AA+
Sbjct: 77 LLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA 136
Query: 566 DFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALA 625
++ L++ DVNA D G + L AA + +L+ +GA D++N R ET L
Sbjct: 137 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 196
Query: 626 LA 627
LA
Sbjct: 197 LA 198
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 32/77 (41%)
Query: 535 VLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLA 594
V+ I + A Q G ALH AA+ D L+ D N D G TPL A
Sbjct: 39 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 98
Query: 595 AKSGHGSVCQLLISSGA 611
+ V Q+LI + A
Sbjct: 99 VSADAQGVFQILIRNRA 115
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 14/63 (22%)
Query: 579 DVNASDADGYTPLMLAAKSGHG-------------SVCQLLISSGAKCDIENARN-ETAL 624
DVN DG+TPLM+A+ SG G +V I GA + R ETAL
Sbjct: 3 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 62
Query: 625 ALA 627
LA
Sbjct: 63 HLA 65
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 353 PIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADL 409
PIH AAR G + + LI+ G NI+ + + T + + C+K L GAD+
Sbjct: 104 PIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV 160
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%)
Query: 555 FYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCD 614
+ +H AA G + L+S+ + VN AD +PL A GH S ++L+ GA+ +
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Query: 615 IENARNETAL 624
A T L
Sbjct: 64 GVTADWHTPL 73
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%)
Query: 557 ALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIE 616
+H AA+RG + V++L++ +++ + TPL LA ++ + + L+ SGA +
Sbjct: 104 PIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQG 163
Query: 617 NARNETALALAR 628
++ A+AR
Sbjct: 164 KGQDSPLHAVAR 175
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 25/61 (40%)
Query: 557 ALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIE 616
LH A G V L+ VN AD +TPL A SG LL+ GA E
Sbjct: 39 PLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE 98
Query: 617 N 617
+
Sbjct: 99 S 99
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 353 PIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADL 409
PIH AAR G + + LI+ G NI+ + + T + + C+K L GAD+
Sbjct: 160 PIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV 216
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%)
Query: 555 FYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCD 614
+ +H AA G + L+S+ + VN AD +PL A GH S ++L+ GA+ +
Sbjct: 60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 119
Query: 615 IENARNETAL 624
A T L
Sbjct: 120 GVTADWHTPL 129
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 25/61 (40%)
Query: 557 ALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIE 616
LH A G V L+ VN AD +TPL A SG LL+ GA E
Sbjct: 95 PLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE 154
Query: 617 N 617
+
Sbjct: 155 S 155
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 38/72 (52%)
Query: 557 ALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIE 616
+H AA+RG + V++L++ +++ + TPL LA ++ + + L+ SGA +
Sbjct: 160 PIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQG 219
Query: 617 NARNETALALAR 628
++ A+ R
Sbjct: 220 KGQDSPLHAVVR 231
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Query: 510 GANIKLQNKYGETAITLAELNRNGEVLE-QVILEYALEEGQKGSAGFYALHRAAKRGDFD 568
GA++ N + A L + +L + +L+ Q SAG LH A G
Sbjct: 223 GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTG 282
Query: 569 LVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLL 606
L + R D+ A D++G PL +A ++ + + LL
Sbjct: 283 LACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Query: 510 GANIKLQNKYGETAITLAELNRNGEVLE-QVILEYALEEGQKGSAGFYALHRAAKRGDFD 568
GA++ N + A L + +L + +L+ Q SAG LH A G
Sbjct: 223 GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTG 282
Query: 569 LVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLL 606
L + R D+ A D++G PL +A ++ + + LL
Sbjct: 283 LACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Query: 510 GANIKLQNKYGETAITLAELNRNGEVLE-QVILEYALEEGQKGSAGFYALHRAAKRGDFD 568
GA++ N + A L + +L + +L+ Q SAG LH A G
Sbjct: 223 GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTG 282
Query: 569 LVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLL 606
L + R D+ A D++G PL +A ++ + + LL
Sbjct: 283 LACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 40/159 (25%)
Query: 506 LLHAGANIKLQ-NKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK- 563
++ GA++ Q ++ GETA+ LA + ++ +LE + + + + G LH A
Sbjct: 7 FIYQGASLHNQTDRTGETALHLAARYSRSDAAKR-LLEASADAXIQDNMGRTPLHAAVSA 65
Query: 564 --RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAK-----------SGHGSVCQL----- 605
+G F ++ L +R D++A DG TPL+LAA+ + H V +
Sbjct: 66 DAQGVFQIL--LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGK 123
Query: 606 -----------------LISSGAKCDIENARNETALALA 627
L+ +GA D++N + ET L LA
Sbjct: 124 SALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLA 162
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 32/79 (40%)
Query: 533 GEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLM 592
G V+ I + A Q G ALH AA+ D L+ D D G TPL
Sbjct: 1 GSVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLH 60
Query: 593 LAAKSGHGSVCQLLISSGA 611
A + V Q+L+ + A
Sbjct: 61 AAVSADAQGVFQILLRNRA 79
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 50/129 (38%), Gaps = 18/129 (13%)
Query: 280 DYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLL------ 333
D+ T A E A+L +PN GR I ++ +AR ELLL
Sbjct: 14 DWLATAAARGRVEEVRALLEAGALPNAPNSY--GRRPIQ-VMMMGSARVAELLLLHGAEP 70
Query: 334 NCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARY 393
NCA T RP+H AAR G L L AG ++ R A G +
Sbjct: 71 NCA---------DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEEL 121
Query: 394 KHEECLKFL 402
H + ++L
Sbjct: 122 GHRDVARYL 130
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 354 IHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEG 406
IH+AAR G +RRLI G + + G TA + ++ + K+LAS G
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG 76
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 45/124 (36%), Gaps = 17/124 (13%)
Query: 313 GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISA 372
G + ++AI NN R V LLN K + P+H AA L KI++ L+ +
Sbjct: 31 GHSASYYAIADNNVRLVCTLLNAGALKNLLENEF------PLHQAATLEDTKIVKILLFS 84
Query: 373 GCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGF 432
G + + G TA + + +K + L G W F
Sbjct: 85 GLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKNWRLXFYGKTG-----------WKTSF 133
Query: 433 QQAV 436
AV
Sbjct: 134 YHAV 137
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 587 GYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALAR 628
G T L +AA V + L+ GA ++E+ R TAL LAR
Sbjct: 111 GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR 152
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 561 AAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARN 620
AA++ D + L+ DV+A D +G T L+ A G +LL +GA D + R
Sbjct: 52 AARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG 110
Query: 621 E-TALALA 627
TAL +A
Sbjct: 111 GLTALHMA 118
>pdb|1T0H|B Chain B, Crystal Structure Of The Rattus Norvegicus Voltage Gated
Calcium Channel Beta Subunit Isoform 2a
Length = 224
Score = 30.4 bits (67), Expect = 3.9, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 326 ARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISA 372
AR ++L++ A P Q SKT L PI + ++ S K+L+RLI +
Sbjct: 109 ARTLQLVVLDADTINHPAQ-LSKTSLAPIIVYVKISSPKVLQRLIKS 154
>pdb|1T0J|B Chain B, Crystal Structure Of A Complex Between Voltage-Gated
Calcium Channel Beta2a Subunit And A Peptide Of The
Alpha1c Subunit
Length = 224
Score = 30.4 bits (67), Expect = 3.9, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 326 ARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISA 372
AR ++L++ A P Q SKT L PI + ++ S K+L+RLI +
Sbjct: 109 ARTLQLVVLDADTINHPAQ-LSKTSLAPIIVYVKISSPKVLQRLIKS 154
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 587 GYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALAR 628
G T L +AA V + L+ GA ++E+ R TAL LAR
Sbjct: 110 GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR 151
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 561 AAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARN 620
AA++ D + L+ DV+A D +G T L+ A G +LL +GA D + R
Sbjct: 51 AARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG 109
Query: 621 E-TALALA 627
TAL +A
Sbjct: 110 GLTALHMA 117
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 569 LVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALA 627
++ L++ DVNA D G + L AA + +L+ +GA D++N + ET L LA
Sbjct: 30 MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLA 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,742,538
Number of Sequences: 62578
Number of extensions: 749458
Number of successful extensions: 2764
Number of sequences better than 100.0: 115
Number of HSP's better than 100.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1685
Number of HSP's gapped (non-prelim): 796
length of query: 758
length of database: 14,973,337
effective HSP length: 106
effective length of query: 652
effective length of database: 8,340,069
effective search space: 5437724988
effective search space used: 5437724988
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)