Query 035705
Match_columns 758
No_of_seqs 623 out of 4342
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 08:59:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035705.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035705hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 2E-64 6.7E-69 550.8 48.1 387 176-639 10-396 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 2.4E-63 8.1E-68 542.2 46.1 387 201-673 2-388 (437)
3 4g8k_A 2-5A-dependent ribonucl 100.0 2E-48 6.8E-53 408.6 35.8 303 226-617 25-331 (337)
4 4g8k_A 2-5A-dependent ribonucl 100.0 6.5E-46 2.2E-50 389.4 35.9 293 311-658 23-330 (337)
5 3utm_A Tankyrase-1; tankyrase, 100.0 1.8E-44 6.2E-49 381.3 31.3 324 225-631 23-350 (351)
6 1wdy_A 2-5A-dependent ribonucl 100.0 7E-44 2.4E-48 364.9 33.1 275 312-659 4-283 (285)
7 1wdy_A 2-5A-dependent ribonucl 100.0 3.1E-43 1.1E-47 360.1 33.7 264 289-617 12-283 (285)
8 3utm_A Tankyrase-1; tankyrase, 100.0 4.3E-43 1.5E-47 370.7 33.1 324 310-671 21-348 (351)
9 2fo1_E LIN-12 protein; beta-ba 100.0 3E-43 1E-47 373.5 19.4 259 310-612 91-371 (373)
10 2fo1_E LIN-12 protein; beta-ba 100.0 5.9E-43 2E-47 371.2 21.1 288 315-654 68-371 (373)
11 3d9h_A CDNA FLJ77766, highly s 100.0 4E-41 1.4E-45 343.1 25.0 263 309-614 11-281 (285)
12 3d9h_A CDNA FLJ77766, highly s 100.0 2.4E-40 8.3E-45 337.3 25.8 259 347-657 12-282 (285)
13 2xai_A ASB-9, ankyrin repeat a 100.0 3.6E-40 1.2E-44 331.9 25.2 247 312-638 2-256 (261)
14 3ljn_A Hypothetical protein; a 100.0 9.3E-41 3.2E-45 354.2 18.7 272 310-641 17-310 (364)
15 3ljn_A Hypothetical protein; a 100.0 1.7E-40 6E-45 352.1 16.2 266 176-543 16-312 (364)
16 1yyh_A HN1;, notch 1, ankyrin 100.0 3.8E-39 1.3E-43 322.9 24.3 206 433-640 36-243 (253)
17 1oy3_D Transcription factor in 100.0 2.6E-39 8.8E-44 330.4 22.7 262 344-672 3-268 (282)
18 1oy3_D Transcription factor in 100.0 3E-39 1E-43 329.9 22.5 267 309-633 5-271 (282)
19 2xai_A ASB-9, ankyrin repeat a 100.0 4.9E-39 1.7E-43 323.6 22.5 239 288-572 9-256 (261)
20 3b7b_A Euchromatic histone-lys 100.0 5.4E-38 1.8E-42 311.6 28.6 225 343-638 4-228 (237)
21 1yyh_A HN1;, notch 1, ankyrin 100.0 1.2E-38 4E-43 319.3 23.4 229 346-612 6-248 (253)
22 3b7b_A Euchromatic histone-lys 100.0 8.1E-38 2.8E-42 310.3 25.9 218 444-671 2-219 (237)
23 1k1a_A B-cell lymphoma 3-encod 100.0 4.1E-38 1.4E-42 313.4 23.0 224 345-640 4-236 (241)
24 4b93_B Ankyrin repeat domain-c 100.0 8.5E-39 2.9E-43 321.7 14.9 224 378-632 6-230 (269)
25 1s70_B 130 kDa myosin-binding 100.0 3.2E-38 1.1E-42 325.2 19.1 265 319-629 4-274 (299)
26 1k1a_A B-cell lymphoma 3-encod 100.0 4.3E-37 1.5E-41 306.0 24.9 218 447-673 3-227 (241)
27 3aji_A 26S proteasome non-ATPa 100.0 4.9E-37 1.7E-41 303.4 24.3 155 456-612 76-230 (231)
28 3aji_A 26S proteasome non-ATPa 100.0 8.1E-37 2.8E-41 301.8 23.7 227 381-654 4-230 (231)
29 1sw6_A Regulatory protein SWI6 100.0 5.4E-39 1.9E-43 334.0 6.2 272 322-631 28-327 (327)
30 3kea_A K1L; tropism, ANK repea 100.0 2.5E-37 8.4E-42 314.9 18.2 223 346-659 27-251 (285)
31 3eu9_A Huntingtin-interacting 100.0 4.8E-36 1.6E-40 298.2 26.8 232 346-614 5-237 (240)
32 4b93_B Ankyrin repeat domain-c 100.0 1.5E-37 5.2E-42 312.5 15.8 234 309-614 7-246 (269)
33 3kea_A K1L; tropism, ANK repea 100.0 8.2E-37 2.8E-41 311.1 20.3 242 294-619 12-253 (285)
34 1s70_B 130 kDa myosin-binding 100.0 9.8E-37 3.4E-41 314.1 19.3 260 356-670 4-273 (299)
35 1sw6_A Regulatory protein SWI6 100.0 5.4E-38 1.9E-42 326.4 8.1 277 348-671 21-325 (327)
36 2dzn_A Probable 26S proteasome 100.0 7.9E-36 2.7E-40 294.1 23.1 209 453-670 2-216 (228)
37 2dzn_A Probable 26S proteasome 100.0 7.8E-36 2.7E-40 294.1 22.5 212 350-630 2-218 (228)
38 2f8y_A Notch homolog 1, transl 100.0 9.7E-36 3.3E-40 292.3 22.6 217 324-614 2-218 (223)
39 3eu9_A Huntingtin-interacting 100.0 2.9E-35 9.9E-40 292.5 25.8 232 376-655 2-236 (240)
40 2f8y_A Notch homolog 1, transl 100.0 2.6E-35 8.8E-40 289.3 22.8 213 433-656 4-218 (223)
41 1ikn_D Protein (I-kappa-B-alph 100.0 2.1E-35 7.3E-40 292.5 13.3 213 448-669 3-226 (236)
42 3hra_A Ankyrin repeat family p 100.0 1.2E-33 4.1E-38 272.5 23.7 193 451-652 3-201 (201)
43 2rfa_A Transient receptor pote 100.0 1.6E-33 5.6E-38 278.2 23.3 214 312-617 2-227 (232)
44 2rfa_A Transient receptor pote 100.0 1.3E-33 4.6E-38 278.9 21.2 198 452-659 2-227 (232)
45 1ikn_D Protein (I-kappa-B-alph 100.0 8E-35 2.7E-39 288.3 11.2 224 310-631 5-230 (236)
46 4gpm_A Engineered protein OR26 100.0 1E-32 3.5E-37 255.4 20.4 158 490-657 7-164 (169)
47 4gpm_A Engineered protein OR26 100.0 5.3E-32 1.8E-36 250.5 20.3 159 455-615 6-164 (169)
48 2pnn_A Transient receptor pote 100.0 3.1E-33 1E-37 283.5 12.9 214 444-667 4-272 (273)
49 2pnn_A Transient receptor pote 100.0 7.8E-33 2.7E-37 280.6 15.7 220 372-625 2-272 (273)
50 3hra_A Ankyrin repeat family p 100.0 2.1E-31 7E-36 256.8 24.7 197 348-610 3-201 (201)
51 2etb_A Transient receptor pote 100.0 6.8E-33 2.3E-37 278.2 13.3 213 350-643 2-244 (256)
52 2etb_A Transient receptor pote 100.0 1.1E-32 3.7E-37 276.7 13.1 113 550-664 86-223 (256)
53 3jxi_A Vanilloid receptor-rela 100.0 1.2E-31 4.2E-36 269.7 10.6 215 348-642 3-247 (260)
54 2aja_A Ankyrin repeat family p 100.0 6.5E-34 2.2E-38 297.6 -9.3 304 190-637 44-366 (376)
55 3jxi_A Vanilloid receptor-rela 100.0 5.8E-31 2E-35 264.8 12.4 88 545-632 84-188 (260)
56 4hbd_A KN motif and ankyrin re 100.0 4.1E-30 1.4E-34 260.0 15.1 185 454-640 77-270 (276)
57 3v30_A DNA-binding protein rfx 100.0 2.7E-29 9.3E-34 235.2 16.8 169 454-665 3-171 (172)
58 2rfm_A Putative ankyrin repeat 100.0 5.2E-29 1.8E-33 237.8 18.6 160 480-640 28-187 (192)
59 3v30_A DNA-binding protein rfx 100.0 2.9E-29 9.9E-34 235.0 15.7 169 416-623 2-171 (172)
60 2aja_A Ankyrin repeat family p 100.0 4.5E-32 1.5E-36 283.6 -5.3 307 99-540 44-369 (376)
61 3v31_A Ankyrin repeat family A 100.0 1.3E-28 4.4E-33 229.3 17.1 153 453-640 3-155 (167)
62 1ihb_A P18-INK4C(INK6), cyclin 100.0 1.2E-28 4.2E-33 228.2 16.6 156 488-654 6-162 (162)
63 2y1l_E Darpin-8.4; hydrolase-i 100.0 3.5E-28 1.2E-32 226.7 19.1 151 486-637 13-163 (169)
64 2rfm_A Putative ankyrin repeat 100.0 1.7E-28 5.7E-33 234.3 17.2 163 446-610 28-190 (192)
65 4hbd_A KN motif and ankyrin re 100.0 1.7E-28 5.8E-33 248.2 17.4 192 352-544 78-274 (276)
66 3f6q_A Integrin-linked protein 100.0 3.1E-28 1.1E-32 229.5 17.2 169 451-620 3-171 (179)
67 2vge_A RELA-associated inhibit 100.0 3.3E-31 1.1E-35 259.5 -3.3 184 451-639 19-207 (229)
68 3v31_A Ankyrin repeat family A 100.0 5.7E-28 1.9E-32 224.9 18.2 161 415-614 2-162 (167)
69 1ihb_A P18-INK4C(INK6), cyclin 100.0 4.1E-28 1.4E-32 224.7 16.6 158 452-612 4-162 (162)
70 2vge_A RELA-associated inhibit 100.0 2.7E-30 9.1E-35 253.1 1.3 193 469-675 1-201 (229)
71 2y1l_E Darpin-8.4; hydrolase-i 100.0 1.4E-27 4.8E-32 222.6 19.5 158 451-610 12-169 (169)
72 3f6q_A Integrin-linked protein 100.0 4.1E-28 1.4E-32 228.7 15.9 169 485-663 3-172 (179)
73 1awc_B Protein (GA binding pro 100.0 9.3E-28 3.2E-32 219.8 17.5 148 489-638 4-151 (153)
74 1ycs_B 53BP2, P53BP2; ankyrin 99.9 2.4E-29 8.2E-34 248.9 2.2 204 451-668 3-224 (239)
75 3twr_A Tankyrase-2; ankyrin re 99.9 1.4E-27 4.8E-32 221.8 14.0 160 450-611 5-164 (165)
76 3twr_A Tankyrase-2; ankyrin re 99.9 2E-27 6.7E-32 220.8 14.3 160 483-653 4-164 (165)
77 1awc_B Protein (GA binding pro 99.9 1.1E-26 3.7E-31 212.7 18.2 150 454-606 3-152 (153)
78 1bd8_A P19INK4D CDK4/6 inhibit 99.9 1.5E-26 5.1E-31 212.6 17.7 151 454-640 3-153 (156)
79 1bd8_A P19INK4D CDK4/6 inhibit 99.9 1.4E-26 4.7E-31 212.8 17.1 121 520-641 2-122 (156)
80 1ycs_B 53BP2, P53BP2; ankyrin 99.9 8.2E-28 2.8E-32 237.9 9.3 167 484-661 2-171 (239)
81 3t8k_A Uncharacterized protein 99.9 1.7E-26 5.7E-31 217.4 9.0 157 453-640 6-174 (186)
82 1bi7_B P16INK4A, MTS1, multipl 99.9 5.8E-26 2E-30 208.4 10.7 145 481-627 6-151 (156)
83 1d9s_A Cyclin-dependent kinase 99.9 1.3E-25 4.6E-30 200.7 12.6 134 477-612 2-136 (136)
84 1d9s_A Cyclin-dependent kinase 99.9 1.8E-25 6.2E-30 199.8 12.0 134 510-654 2-136 (136)
85 1bi7_B P16INK4A, MTS1, multipl 99.9 1.8E-25 6.1E-30 205.2 10.6 144 514-668 6-150 (156)
86 3t8k_A Uncharacterized protein 99.9 2.4E-24 8.3E-29 202.7 11.6 156 313-474 6-175 (186)
87 1n0r_A 4ANK, 4 ankyrin repeats 99.9 4E-23 1.4E-27 182.0 15.5 125 487-612 2-126 (126)
88 2jab_A H10-2-G3; HER2, darpin, 99.9 2.9E-23 1E-27 185.4 13.6 125 485-610 12-136 (136)
89 1n0r_A 4ANK, 4 ankyrin repeats 99.9 8.8E-23 3E-27 179.7 16.0 126 519-654 1-126 (126)
90 2jab_A H10-2-G3; HER2, darpin, 99.9 6.2E-23 2.1E-27 183.3 14.0 120 517-637 11-130 (136)
91 3c5r_A BARD-1, BRCA1-associate 99.9 1.7E-23 5.9E-28 187.3 8.2 123 478-635 2-124 (137)
92 3c5r_A BARD-1, BRCA1-associate 99.9 3.8E-23 1.3E-27 185.1 8.7 134 443-612 1-134 (137)
93 3aaa_C Myotrophin, protein V-1 99.9 3.7E-22 1.3E-26 174.8 12.1 109 552-669 5-113 (123)
94 3ehr_A Osteoclast-stimulating 99.9 6.4E-23 2.2E-27 200.4 7.6 138 483-620 69-206 (222)
95 3deo_A Signal recognition part 99.9 1.2E-23 4.1E-28 198.6 1.9 132 485-635 42-174 (183)
96 2b0o_E UPLC1; arfgap, structur 99.9 3.2E-22 1.1E-26 203.9 11.9 139 488-633 152-299 (301)
97 3aaa_C Myotrophin, protein V-1 99.9 4.2E-22 1.4E-26 174.4 9.8 110 485-628 5-114 (123)
98 2b0o_E UPLC1; arfgap, structur 99.9 1.1E-21 3.6E-26 200.0 13.0 139 520-674 151-298 (301)
99 3ui2_A Signal recognition part 99.9 2.8E-21 9.6E-26 191.2 14.6 139 311-475 43-182 (244)
100 3deo_A Signal recognition part 99.9 2.8E-21 9.5E-26 182.3 13.5 139 310-474 41-180 (183)
101 3ehr_A Osteoclast-stimulating 99.9 5.6E-22 1.9E-26 193.7 8.2 139 516-664 69-208 (222)
102 1dcq_A PYK2-associated protein 99.8 5.6E-21 1.9E-25 192.4 15.2 192 449-654 62-263 (278)
103 3ui2_A Signal recognition part 99.8 2E-21 6.8E-26 192.3 10.9 136 453-640 45-180 (244)
104 1n0q_A 3ANK, 3 ankyrin repeats 99.8 9.4E-21 3.2E-25 156.5 12.1 93 553-654 1-93 (93)
105 1dcq_A PYK2-associated protein 99.8 1E-19 3.6E-24 183.1 19.4 124 489-613 132-264 (278)
106 2l6b_A NR1C; ankyrin, consensu 99.8 9.7E-21 3.3E-25 163.5 9.1 109 549-666 4-112 (115)
107 3jue_A Arfgap with coiled-coil 99.8 2.1E-20 7.1E-25 194.5 12.8 147 485-632 197-349 (368)
108 3lvq_E ARF-GAP with SH3 domain 99.8 7.1E-20 2.4E-24 201.0 15.5 134 489-629 134-276 (497)
109 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.8E-19 6E-24 148.7 12.7 93 312-408 1-93 (93)
110 3jue_A Arfgap with coiled-coil 99.8 1.1E-19 3.7E-24 189.1 13.9 147 516-669 195-344 (368)
111 3lvq_E ARF-GAP with SH3 domain 99.8 1.3E-19 4.5E-24 198.9 14.5 131 520-660 132-271 (497)
112 2l6b_A NR1C; ankyrin, consensu 99.8 2.5E-19 8.5E-24 154.6 8.7 108 483-624 5-112 (115)
113 2zgd_A 3 repeat synthetic anky 99.7 8.2E-18 2.8E-22 143.4 10.7 92 547-638 17-108 (110)
114 2zgd_A 3 repeat synthetic anky 99.7 3.5E-16 1.2E-20 133.3 11.2 90 309-402 20-109 (110)
115 4g26_A Pentatricopeptide repea 65.8 11 0.00039 40.1 7.5 46 194-254 91-140 (501)
116 3mkq_B Coatomer subunit alpha; 60.8 28 0.00096 30.8 7.7 138 23-205 4-144 (177)
117 4g26_A Pentatricopeptide repea 56.6 37 0.0013 36.1 9.5 55 185-254 113-175 (501)
118 1mai_A Phospholipase C delta-1 42.9 16 0.00054 30.6 3.1 39 707-746 84-123 (131)
119 2rlo_A Centaurin-gamma 1; spli 42.8 22 0.00076 29.4 4.1 40 706-746 87-126 (128)
120 1dro_A Beta-spectrin; cytoskel 42.5 24 0.00083 28.9 4.2 38 706-744 82-119 (122)
121 2p0d_A RHO GTPase-activating p 40.8 26 0.00088 29.1 4.1 38 707-745 88-125 (129)
122 3pp2_A RHO GTPase-activating p 38.5 22 0.00076 29.3 3.3 37 707-744 87-123 (124)
123 1wjm_A Beta-spectrin III; PH d 38.4 30 0.001 28.3 4.1 39 705-744 79-117 (123)
124 1u5d_A SKAP55, SRC kinase-asso 36.7 21 0.00073 28.1 2.9 38 707-745 69-106 (108)
125 1btn_A Beta-spectrin; signal t 34.5 31 0.0011 27.0 3.6 34 707-741 72-105 (106)
126 3cxb_B Pleckstrin homology dom 34.5 33 0.0011 27.5 3.7 42 705-747 63-104 (112)
127 2kne_B CAM, ATPase, Ca++ trans 34.2 16 0.00055 21.0 1.1 15 732-746 5-19 (28)
128 3rcp_A Pleckstrin homology dom 33.3 32 0.0011 26.9 3.4 39 706-745 56-94 (103)
129 1pls_A Pleckstrin homology dom 32.4 45 0.0015 26.6 4.2 39 707-746 65-103 (113)
130 2d9v_A Pleckstrin homology dom 29.1 53 0.0018 27.1 4.2 38 707-745 78-115 (130)
131 1wg7_A Dedicator of cytokinesi 28.0 59 0.002 27.5 4.5 41 706-747 87-127 (150)
132 3mkq_B Coatomer subunit alpha; 27.5 2.4E+02 0.0084 24.7 8.3 136 88-252 7-145 (177)
133 3aj4_A Pleckstrin homology dom 25.5 48 0.0016 26.3 3.2 35 708-743 76-110 (112)
134 1gp8_A Protein (scaffolding pr 25.4 58 0.002 20.2 2.5 22 26-47 12-33 (40)
135 2d9x_A Oxysterol binding prote 25.1 46 0.0016 26.9 3.0 40 707-747 68-107 (120)
136 2i5f_A Pleckstrin; PH domain, 22.8 66 0.0022 25.2 3.5 35 707-742 73-107 (109)
137 2d9y_A Pleckstrin homology dom 22.7 73 0.0025 25.3 3.9 35 708-743 74-108 (117)
138 2cof_A Protein KIAA1914; PH do 22.6 54 0.0018 25.8 2.9 37 706-743 64-100 (107)
139 1wgq_A FYVE, rhogef and PH dom 22.2 56 0.0019 25.7 3.0 35 708-743 68-102 (109)
140 2yry_A Pleckstrin homology dom 22.2 74 0.0025 25.6 3.8 35 708-743 85-119 (122)
141 2dtc_A RAL guanine nucleotide 22.2 83 0.0028 26.0 3.9 39 704-743 72-111 (126)
142 2rsg_A Collagen type IV alpha- 20.8 1.1E+02 0.0037 23.2 4.3 35 706-742 58-92 (94)
143 2da0_A 130-kDa phosphatidylino 20.2 1.1E+02 0.0036 24.4 4.3 38 708-747 67-104 (114)
144 3a98_B Engulfment and cell mot 20.1 63 0.0021 29.3 3.0 37 709-746 116-152 (203)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2e-64 Score=550.75 Aligned_cols=387 Identities=25% Similarity=0.325 Sum_probs=362.7
Q ss_pred CCCCCchHHHHHHhcCCHHHHHHHHhCCCCCCcchhhhhhccccccccCCCCchhHHHHhcCCHHHHHHHHHcCCCCccc
Q 035705 176 RPQVSVHALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIK 255 (758)
Q Consensus 176 ~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~d~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~ 255 (758)
.+..|.||||+|+..|+.++|++|+++|++++..+ ..+.||||+|+..|+.++|++|+++|++++.+
T Consensus 10 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~-------------~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~ 76 (437)
T 1n11_A 10 GGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSN-------------VKVETPLHMAARAGHTEVAKYLLQNKAKVNAK 76 (437)
T ss_dssp -----CCHHHHHHHHTCHHHHHHHHHTTCCSCCSS-------------SCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCC
T ss_pred cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCC-------------CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC
Confidence 45678999999999999999999999999999887 45999999999999999999999999999875
Q ss_pred cccCccccccccchhhhhhccccccccccchhhhhhhchHHHHHHHhhccCCCCCCCCchHHHHHHHcCCHHHHHHHHHc
Q 035705 256 VRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLNC 335 (758)
Q Consensus 256 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 335 (758)
+..|.||||+|+..|+.++|++|+++
T Consensus 77 ------------------------------------------------------~~~g~t~L~~A~~~g~~~~v~~Ll~~ 102 (437)
T 1n11_A 77 ------------------------------------------------------AKDDQTPLHCAARIGHTNMVKLLLEN 102 (437)
T ss_dssp ------------------------------------------------------CTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred ------------------------------------------------------CCCCCCHHHHHHHCCCHHHHHHHHhC
Confidence 34678999999999999999999999
Q ss_pred cCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccC
Q 035705 336 AVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYA 415 (758)
Q Consensus 336 g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~ 415 (758)
|++++. .+..|.||||+|+..|+.+++++|++++++++..+..|.||||+|+..|+.+++++|+++|++++..+..
T Consensus 103 ga~~~~----~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~ 178 (437)
T 1n11_A 103 NANPNL----ATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN 178 (437)
T ss_dssp TCCTTC----CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSS
T ss_pred CCCCCC----CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC
Confidence 999876 6789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHH
Q 035705 416 GQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAA 495 (758)
Q Consensus 416 g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~ 495 (758)
|.||||+|+. .+..+++++|++.|.+++..+..|.||||+|+..++.+++++|++. |.+++..+..|.||||+|+
T Consensus 179 g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~ 253 (437)
T 1n11_A 179 GLTPLHVAVH----HNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY-GGSANAESVQGVTPLHLAA 253 (437)
T ss_dssp CCCHHHHHHH----TTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHH
T ss_pred CCCHHHHHHH----cCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHH
Confidence 9999999965 4678999999999999999999999999999999999999999998 8999999999999999999
Q ss_pred HcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHh
Q 035705 496 AAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVS 575 (758)
Q Consensus 496 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 575 (758)
..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+. .+.+++..+..|+||||+|+..|+.++|++|++
T Consensus 254 ~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 332 (437)
T 1n11_A 254 QEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK-HGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ 332 (437)
T ss_dssp HTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHH
T ss_pred HCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh-CCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 9999999999999999999999999999999999999999997765 578899999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHH
Q 035705 576 RCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENV 639 (758)
Q Consensus 576 ~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~l 639 (758)
+|+++|.+|..|+||||+|+..|+.++|++|+++|++++.+|.+|+|||++|++.|+.++++.|
T Consensus 333 ~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~~~~~~~l 396 (437)
T 1n11_A 333 HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 396 (437)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred cCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999866643
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.4e-63 Score=542.23 Aligned_cols=387 Identities=21% Similarity=0.272 Sum_probs=357.8
Q ss_pred hCCCCCCcchhhhhhccccccccCCCCchhHHHHhcCCHHHHHHHHHcCCCCccccccCccccccccchhhhhhcccccc
Q 035705 201 KCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAED 280 (758)
Q Consensus 201 ~~g~d~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 280 (758)
+.|++++..+ ..|.||||+|+..|+.++|++|+++|++++..
T Consensus 2 ~~g~~~~~~~-------------~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~------------------------- 43 (437)
T 1n11_A 2 SPGISGGGGG-------------ESGLTPLHVASFMGHLPIVKNLLQRGASPNVS------------------------- 43 (437)
T ss_dssp --------------------------CCHHHHHHHHTCHHHHHHHHHTTCCSCCS-------------------------
T ss_pred CCCCCccccC-------------CCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCC-------------------------
Confidence 3578888877 45999999999999999999999999999865
Q ss_pred ccccchhhhhhhchHHHHHHHhhccCCCCCCCCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHc
Q 035705 281 YCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARL 360 (758)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~ 360 (758)
+..|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..
T Consensus 44 -----------------------------~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~----~~~~g~t~L~~A~~~ 90 (437)
T 1n11_A 44 -----------------------------NVKVETPLHMAARAGHTEVAKYLLQNKAKVNA----KAKDDQTPLHCAARI 90 (437)
T ss_dssp -----------------------------SSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSC----CCTTSCCHHHHHHHH
T ss_pred -----------------------------CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC----CCCCCCCHHHHHHHC
Confidence 34678999999999999999999999999876 688999999999999
Q ss_pred CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHH
Q 035705 361 GSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSI 440 (758)
Q Consensus 361 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll 440 (758)
|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++++++++..+..|.||||+|+. .+..+++++|+
T Consensus 91 g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~----~g~~~~v~~Ll 166 (437)
T 1n11_A 91 GHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAK----YGKVRVAELLL 166 (437)
T ss_dssp TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHH----TTCHHHHHHHH
T ss_pred CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHH----cCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999965 47899999999
Q ss_pred HcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCC
Q 035705 441 RSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYG 520 (758)
Q Consensus 441 ~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g 520 (758)
+.|++++..+..|.||||+|+..++.+++++|+++ +.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|
T Consensus 167 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g 245 (437)
T 1n11_A 167 ERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR-GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQG 245 (437)
T ss_dssp HTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGG-TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred hCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Confidence 99999999999999999999999999999999998 89999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcH
Q 035705 521 ETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHG 600 (758)
Q Consensus 521 ~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~ 600 (758)
.||||+|+..|+.+++++|+. .+.+.+..+..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.
T Consensus 246 ~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~ 324 (437)
T 1n11_A 246 VTPLHLAAQEGHAEMVALLLS-KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNI 324 (437)
T ss_dssp CCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCS
T ss_pred CCHHHHHHHCCCHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcH
Confidence 999999999999999997765 5778889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCccccccccCCCcchHHHHHH
Q 035705 601 SVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTKCGKGSPHVKLLKM 673 (758)
Q Consensus 601 ~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~d~~g~t~l~~a~~~~ 673 (758)
++|++|+++|+|+|.+|..|+||||+|+..|+.+ ++++|+++|++++.+|..|+||+++|....
T Consensus 325 ~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~---------iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g 388 (437)
T 1n11_A 325 KLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTD---------IVTLLLKNGASPNEVSSDGTTPLAIAKRLG 388 (437)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH---------HHHHHHHTTCCSCCCCSSSCCHHHHHHHTT
T ss_pred HHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHH---------HHHHHHHCcCCCCCCCCCCCCHHHHHHHcC
Confidence 9999999999999999999999999999999986 667889999999999999999999987643
No 3
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=2e-48 Score=408.58 Aligned_cols=303 Identities=26% Similarity=0.335 Sum_probs=275.1
Q ss_pred CCchhHHHHhcCCHHHHHHHHHcCCCCccccccCccccccccchhhhhhccccccccccchhhhhhhchHHHHHHHhhcc
Q 035705 226 DCNALVGAVVSRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHI 305 (758)
Q Consensus 226 ~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 305 (758)
|.|||+.|++.|+.++|++|+++|++++..+
T Consensus 25 ~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~------------------------------------------------- 55 (337)
T 4g8k_A 25 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQE------------------------------------------------- 55 (337)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHTCCTTCCC-------------------------------------------------
T ss_pred CChHHHHHHHcCCHHHHHHHHHCCCCCCccC-------------------------------------------------
Confidence 6799999999999999999999999998763
Q ss_pred CCCCCCCCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCc
Q 035705 306 SPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGET 385 (758)
Q Consensus 306 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t 385 (758)
+..|+||||+|+..|+.++|++|+++|++++. .+..+.+|++.++..+...++..+++.+++++..|..|.|
T Consensus 56 ----~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t 127 (337)
T 4g8k_A 56 ----EEGGWTPLHNAVQMSREDIVELLLRHGADPVL----RKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFT 127 (337)
T ss_dssp ----TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC----CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCB
T ss_pred ----CCCCcCHHHHHHHcCCHHHHHHHHHcCCchhh----hccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCC
Confidence 24588999999999999999999999999886 6889999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCC
Q 035705 386 AAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQAND 465 (758)
Q Consensus 386 ~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~ 465 (758)
|||+|+..|+.+++++|+++|++++..+.... +....+..|.||||+|+..|+
T Consensus 128 ~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~---------------------------~~~~~~~~g~T~L~~A~~~g~ 180 (337)
T 4g8k_A 128 AFMEAAVYGKVKALKFLYKRGANVNLRRKTKE---------------------------DQERLRKGGATALMDAAEKGH 180 (337)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC--------------------------------CTTCSCCHHHHHHHHTC
T ss_pred HHHHHHHcCcHHHHHHHHHcCCCcchhhcccc---------------------------ccccccCCCCcHHHHHHHCCC
Confidence 99999999999999999999999887654432 234456788999999999999
Q ss_pred HHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCC----HHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHH
Q 035705 466 VDALKKLIEWADVDLDEQDADGFSAAMIAAAAGH----VEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVIL 541 (758)
Q Consensus 466 ~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~ 541 (758)
.+++++|+++.|++++.++..|.|+++.++..+. ..++++|+++|++++.++..|+||||+|+..|+.++++.|+.
T Consensus 181 ~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~ 260 (337)
T 4g8k_A 181 VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 260 (337)
T ss_dssp HHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHH
Confidence 9999999987799999999999999998876544 468899999999999999999999999999999999999999
Q ss_pred hhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCC
Q 035705 542 EYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIEN 617 (758)
Q Consensus 542 ~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d 617 (758)
..+.+++..|..|+||||+|++.|+.++|++|+++|+++|.+ ||||+|+..|+.++|++||++|||+|...
T Consensus 261 ~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA~~d~~~ 331 (337)
T 4g8k_A 261 QEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG-----DLVMTARRNYDHSLVKVLLSHGAKEDFHP 331 (337)
T ss_dssp STTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC-----CHHHHHHHTTCHHHHHHHHHTTCCC----
T ss_pred hcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-----CHHHHHHHcCCHHHHHHHHHCcCCCCCCC
Confidence 999999999999999999999999999999999999999864 59999999999999999999999998743
No 4
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=6.5e-46 Score=389.44 Aligned_cols=293 Identities=26% Similarity=0.365 Sum_probs=252.7
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 035705 311 HNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMIC 390 (758)
Q Consensus 311 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 390 (758)
.+|.|+||.|+..|++++|++||++|++++.. .+..|+||||+|+..|+.++|++|+++|++++.++..+.+|++.+
T Consensus 23 ~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~---~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~ 99 (337)
T 4g8k_A 23 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQ---EEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILA 99 (337)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCC---CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred CCCChHHHHHHHcCCHHHHHHHHHCCCCCCcc---CCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHH
Confidence 35789999999999999999999999998863 234689999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHH
Q 035705 391 ARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALK 470 (758)
Q Consensus 391 ~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~ 470 (758)
+..+...++..+++.+++++..+..|.| |||+|+..|+.++++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~d~~g~t-------------------------------------~l~~A~~~~~~~~~~ 142 (337)
T 4g8k_A 100 AIAGSVKLLKLFLSKGADVNECDFYGFT-------------------------------------AFMEAAVYGKVKALK 142 (337)
T ss_dssp HHHTCHHHHHHHHTTTCCTTCBCTTCCB-------------------------------------HHHHHHHTTCHHHHH
T ss_pred HhcccchhhHHhhhccchhhhhccCCCC-------------------------------------HHHHHHHcCcHHHHH
Confidence 9999999999999988888777666654 555556666666666
Q ss_pred HHHHhcCCCCcc----------cCCCCCcHHHHHHHcCCHHHHHHHHh-CCCCCCcCCCCCCcHHHHHHHcCC---hhHH
Q 035705 471 KLIEWADVDLDE----------QDADGFSAAMIAAAAGHVEAFRLLLH-AGANIKLQNKYGETAITLAELNRN---GEVL 536 (758)
Q Consensus 471 ~Ll~~~~~~~~~----------~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~---~~~v 536 (758)
+|+++ |++++. .+..|.||||+|+..|+.++|++|++ .|++++.++..|.|+++.++..+. .+.+
T Consensus 143 ~ll~~-ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i 221 (337)
T 4g8k_A 143 FLYKR-GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAI 221 (337)
T ss_dssp HHHHT-TCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHH
T ss_pred HHHHc-CCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHH
Confidence 66665 555543 45678999999999999999999995 599999999999999998877544 3445
Q ss_pred HHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCC
Q 035705 537 EQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSR-CYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDI 615 (758)
Q Consensus 537 ~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~ 615 (758)
..+|.+.+.+++..+..|+||||+|+..|+.+++++|++. |+++|.+|..|+||||+|++.|+.++|++|+++|||+|.
T Consensus 222 ~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~ 301 (337)
T 4g8k_A 222 THLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC 301 (337)
T ss_dssp HHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTT
T ss_pred HHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence 5567788999999999999999999999999999999985 799999999999999999999999999999999999976
Q ss_pred CCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCccccc
Q 035705 616 ENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKH 658 (758)
Q Consensus 616 ~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~ 658 (758)
+ ||||+|+++|+.+ ++++|+++||++|..
T Consensus 302 ~-----~~L~~A~~~~~~~---------iv~~Ll~~GA~~d~~ 330 (337)
T 4g8k_A 302 G-----DLVMTARRNYDHS---------LVKVLLSHGAKEDFH 330 (337)
T ss_dssp C-----CHHHHHHHTTCHH---------HHHHHHHTTCCC---
T ss_pred C-----CHHHHHHHcCCHH---------HHHHHHHCcCCCCCC
Confidence 4 6999999999986 677999999999864
No 5
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.8e-44 Score=381.27 Aligned_cols=324 Identities=25% Similarity=0.253 Sum_probs=267.6
Q ss_pred CCCchhHHHHhcCCHHHHHHHHHc-CCCCccccccCccccccccchhhhhhccccccccccchhhhhhhchHHHHHHHhh
Q 035705 225 FDCNALVGAVVSRQISVVRLLLQA-GVKMDIKVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQ 303 (758)
Q Consensus 225 ~~~t~L~~A~~~g~~~iv~~Ll~~-ga~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 303 (758)
.+.|+|+.|+..|+.+.|+.|+.. +++++..
T Consensus 23 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~------------------------------------------------ 54 (351)
T 3utm_A 23 YKKDELLEAARSGNEEKLMALLTPLNVNCHAS------------------------------------------------ 54 (351)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCS------------------------------------------------
T ss_pred ccchhHHHHHHcCCHHHHHHHHHhcCCCcccC------------------------------------------------
Confidence 478999999999999999999887 7777764
Q ss_pred ccCCCCCCCCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Q 035705 304 HISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAG 383 (758)
Q Consensus 304 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g 383 (758)
+..|.||||+|+..|+.++|++|+++|++++. .+..|.||||+|+..|+.+++++|+++|++++..+..|
T Consensus 55 ------d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~----~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g 124 (351)
T 3utm_A 55 ------DGRKSTPLHLAAGYNRVRIVQLLLQHGADVHA----KDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQ 124 (351)
T ss_dssp ------STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC----CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred ------CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc----cCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCC
Confidence 45788999999999999999999999999876 68899999999999999999999999999999999999
Q ss_pred CcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHc
Q 035705 384 ETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQA 463 (758)
Q Consensus 384 ~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~ 463 (758)
.||||+|+..|+.+++++|+++|++++..+..|.+|++++. ..+..+.+.+.... +++..++..
T Consensus 125 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~----~~~~~~~~~~~~~~------------~~~~~~~~~ 188 (351)
T 3utm_A 125 FTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAP----TPELRERLTYEFKG------------HSLLQAARE 188 (351)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCS----SHHHHHHHHHHHHH------------HHHHHHHHT
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHh----hhhhHHHHHhhhcc------------cHHHHHHHh
Confidence 99999999999999999999999999999999999999994 34455555554432 578888999
Q ss_pred CCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHc---CCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHH
Q 035705 464 NDVDALKKLIEWADVDLDEQDADGFSAAMIAAAA---GHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVI 540 (758)
Q Consensus 464 ~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll 540 (758)
++.+.++.++... ......+..|.||||+|+.. +..+++++|++.|++++.++..|.||||+|+..|+.+++++|+
T Consensus 189 ~~~~~~~~~l~~~-~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 267 (351)
T 3utm_A 189 ADLAKVKKTLALE-IINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLH 267 (351)
T ss_dssp TCHHHHHHHTTTC-CTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHhh-cccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 9999999999873 44445678899999999998 5589999999999999999999999999999999998888666
Q ss_pred HhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCC
Q 035705 541 LEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARN 620 (758)
Q Consensus 541 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g 620 (758)
+.+.+++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||+++| +.+++++|.+.+.. ....+
T Consensus 268 -~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a----~~~~~~~l~~~~~~---~~~~~ 339 (351)
T 3utm_A 268 -KHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG----NEAVQQILSESTPM---RTSDV 339 (351)
T ss_dssp -HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHS----CHHHHHHHHHC-----------
T ss_pred -HCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhh----hHHHHHHHHhcccc---ccCcc
Confidence 46778888888888999999988899999999998988888888889988887 67788888887554 34567
Q ss_pred CcHHHHHHHCC
Q 035705 621 ETALALARENG 631 (758)
Q Consensus 621 ~t~L~~A~~~~ 631 (758)
.++|..|++.|
T Consensus 340 ~~~l~~A~~~g 350 (351)
T 3utm_A 340 DYRLLEASKAG 350 (351)
T ss_dssp -----------
T ss_pred eeehhhhhccC
Confidence 78888888776
No 6
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=7e-44 Score=364.88 Aligned_cols=275 Identities=24% Similarity=0.266 Sum_probs=175.9
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 035705 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICA 391 (758)
Q Consensus 312 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 391 (758)
+|.||||.|+..|+.+++++|++.|++++.. .+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~---~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 80 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQ---EEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAA 80 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCC---CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCcccc---cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 4667777777777777777777776666542 2556667777777777777777777777776666666667777776
Q ss_pred HcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHH
Q 035705 392 RYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKK 471 (758)
Q Consensus 392 ~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~ 471 (758)
..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++
T Consensus 81 ~~~~~~~v~~Ll~~g~~~~~~~~~-------------------------------------g~t~L~~A~~~~~~~~~~~ 123 (285)
T 1wdy_A 81 IAGSVKLLKLFLSKGADVNECDFY-------------------------------------GFTAFMEAAVYGKVKALKF 123 (285)
T ss_dssp HHTCHHHHHHHHHTTCCTTCBCTT-------------------------------------CCBHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHcCCCCCccCcc-------------------------------------cCCHHHHHHHhCCHHHHHH
Confidence 666666666666666555433322 2345555555555555555
Q ss_pred HHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCC
Q 035705 472 LIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKG 551 (758)
Q Consensus 472 Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~ 551 (758)
|++. +++++..+.... +....+..|.||||+|+..|+.+++++|+...+.+++..+
T Consensus 124 Ll~~-g~~~~~~~~~~~-----------------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~ 179 (285)
T 1wdy_A 124 LYKR-GANVNLRRKTKE-----------------------DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD 179 (285)
T ss_dssp HHHT-TCCTTCCCCCCH-----------------------HHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCC
T ss_pred HHHh-CCCcccccccHH-----------------------HHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccC
Confidence 5555 455544410000 0000034455555555555555555555544455555555
Q ss_pred CCCchHHHHHHHcCC----HHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHh-CCCCCCCCCCCCCcHHHH
Q 035705 552 SAGFYALHRAAKRGD----FDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLIS-SGAKCDIENARNETALAL 626 (758)
Q Consensus 552 ~~g~t~L~~A~~~g~----~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~-~gad~~~~d~~g~t~L~~ 626 (758)
..|.||||+|+..++ .+++++|+++|++++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+
T Consensus 180 ~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~ 259 (285)
T 1wdy_A 180 NMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL 259 (285)
T ss_dssp TTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHH
T ss_pred CCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHH
Confidence 556666666666666 777788888888888888888888888888888888888887 788888888888888888
Q ss_pred HHHCCChhhHHHHHHHHHHHHHHhCCCcccccc
Q 035705 627 ARENGNGNEAENVILDELALTLVLDGTYVKKHT 659 (758)
Q Consensus 627 A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~d 659 (758)
|++.++.+ ++++|+++|++++.+|
T Consensus 260 A~~~~~~~---------i~~~Ll~~Ga~~~~~d 283 (285)
T 1wdy_A 260 AVELKLKK---------IAELLCKRGASTDCGD 283 (285)
T ss_dssp HHHTTCHH---------HHHHHHHHSSCSCCSS
T ss_pred HHHcCcHH---------HHHHHHHcCCCCCccc
Confidence 88887775 5557777788877766
No 7
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.1e-43 Score=360.05 Aligned_cols=264 Identities=27% Similarity=0.347 Sum_probs=211.4
Q ss_pred hhhhchHHHHHHHhhcc-CCC--CCCCCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHH
Q 035705 289 EYFESSGAILHMLFQHI-SPN--ILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKI 365 (758)
Q Consensus 289 ~~~~~~~~~~~~ll~~~-~~~--~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~ 365 (758)
....+..+++++|++.. +++ .+..|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.++
T Consensus 12 A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~----~~~~g~t~L~~A~~~~~~~~ 87 (285)
T 1wdy_A 12 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL----RKKNGATPFLLAAIAGSVKL 87 (285)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC----CCTTCCCHHHHHHHHTCHHH
T ss_pred HHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcc----cCCCCCCHHHHHHHcCCHHH
Confidence 44566778999999983 333 267789999999999999999999999999876 68899999999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCC
Q 035705 366 LRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNI 445 (758)
Q Consensus 366 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~ 445 (758)
+++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+.... .
T Consensus 88 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~---------------------------~ 140 (285)
T 1wdy_A 88 LKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE---------------------------D 140 (285)
T ss_dssp HHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCH---------------------------H
T ss_pred HHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHH---------------------------H
Confidence 9999999999999999999999999999999999999999999876543221 0
Q ss_pred cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCC----HHHHHHHHhCCCCCCcCCCCCC
Q 035705 446 IQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGH----VEAFRLLLHAGANIKLQNKYGE 521 (758)
Q Consensus 446 ~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~~~~~~~~g~ 521 (758)
....+..|.||||.|+..|+.+++++|++..+++++..+..|.||||+|+..++ .+++++|+++|++++.++..
T Consensus 141 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~-- 218 (285)
T 1wdy_A 141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGER-- 218 (285)
T ss_dssp HHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTT--
T ss_pred HHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCC--
Confidence 122355677777777777777777777776667777777777777777777777 67777777777776666554
Q ss_pred cHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHh-cCCCCCCCCCCCCcHHHHHHHcCcH
Q 035705 522 TAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVS-RCYDVNASDADGYTPLMLAAKSGHG 600 (758)
Q Consensus 522 t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~n~~d~~g~tpL~~A~~~~~~ 600 (758)
|.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..++.
T Consensus 219 --------------------------------g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~ 266 (285)
T 1wdy_A 219 --------------------------------GKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLK 266 (285)
T ss_dssp --------------------------------SCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred --------------------------------CCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcH
Confidence 4555666666677777777777 6788888888888888888888888
Q ss_pred HHHHHHHhCCCCCCCCC
Q 035705 601 SVCQLLISSGAKCDIEN 617 (758)
Q Consensus 601 ~iv~~Ll~~gad~~~~d 617 (758)
+++++|+++|++++.+|
T Consensus 267 ~i~~~Ll~~Ga~~~~~d 283 (285)
T 1wdy_A 267 KIAELLCKRGASTDCGD 283 (285)
T ss_dssp HHHHHHHHHSSCSCCSS
T ss_pred HHHHHHHHcCCCCCccc
Confidence 88888888888887776
No 8
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=4.3e-43 Score=370.68 Aligned_cols=324 Identities=20% Similarity=0.146 Sum_probs=264.1
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHHc-cCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 035705 310 LHNGRTLIHHAILCNNARAVELLLNC-AVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAM 388 (758)
Q Consensus 310 ~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 388 (758)
+..+.++||.|+..|+.+.|+.|+.. +.+++. .+..|.||||+|+..|+.+++++|+++|++++.++..|.||||
T Consensus 21 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~----~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 96 (351)
T 3utm_A 21 GEYKKDELLEAARSGNEEKLMALLTPLNVNCHA----SDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLH 96 (351)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCC----SSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred ccccchhHHHHHHcCCHHHHHHHHHhcCCCccc----CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHH
Confidence 34678999999999999999999875 566554 7889999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHH
Q 035705 389 ICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDA 468 (758)
Q Consensus 389 ~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~ 468 (758)
+|+..|+.+++++|+++|++++..+..|.||||+|+. .+..+++++|++.|++++..+..|.||++.++..+..+.
T Consensus 97 ~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~ 172 (351)
T 3utm_A 97 NACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAAS----KNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRER 172 (351)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHH
T ss_pred HHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHH
Confidence 9999999999999999999999999999999999964 467889999999999998888899999999888888888
Q ss_pred HHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcC---ChhHHHHHHHhhcc
Q 035705 469 LKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNR---NGEVLEQVILEYAL 545 (758)
Q Consensus 469 v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~---~~~~v~~ll~~~~~ 545 (758)
+++.... +++..++..+..+.++.++..+......+..|.||||+|+..+ ..+++++| .+.+.
T Consensus 173 ~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~L-l~~g~ 238 (351)
T 3utm_A 173 LTYEFKG-------------HSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELL-LRKGA 238 (351)
T ss_dssp HHHHHHH-------------HHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHH-HHTTC
T ss_pred HHhhhcc-------------cHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHH-HHcCC
Confidence 8777664 4678888888888888888877666667788899999999884 45666644 45677
Q ss_pred ccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHH
Q 035705 546 EEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALA 625 (758)
Q Consensus 546 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~ 625 (758)
+++..+..|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|+||++
T Consensus 239 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~ 318 (351)
T 3utm_A 239 NVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQ 318 (351)
T ss_dssp CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred CcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhh
Confidence 88888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCChhhHHHHHHHHHHHHHHhCCCccccccccCCCcchHHHH
Q 035705 626 LARENGNGNEAENVILDELALTLVLDGTYVKKHTKCGKGSPHVKLL 671 (758)
Q Consensus 626 ~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~d~~g~t~l~~a~~ 671 (758)
+|. .+ ++++|.+.+.. ....+.+++..|+.
T Consensus 319 ~a~----~~---------~~~~l~~~~~~---~~~~~~~~l~~A~~ 348 (351)
T 3utm_A 319 MGN----EA---------VQQILSESTPM---RTSDVDYRLLEASK 348 (351)
T ss_dssp HSC----HH---------HHHHHHHC--------------------
T ss_pred hhh----HH---------HHHHHHhcccc---ccCcceeehhhhhc
Confidence 882 22 44455555432 33455566666543
No 9
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=3e-43 Score=373.46 Aligned_cols=259 Identities=21% Similarity=0.272 Sum_probs=185.7
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCC-CCCCcHHHHHHHcCCHHHHHHHH--------HcCCCCCCCC
Q 035705 310 LHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYS-KTELRPIHLAARLGSAKILRRLI--------SAGCNINSRT 380 (758)
Q Consensus 310 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll--------~~g~~~~~~~ 380 (758)
+..|.||||.|+..+ .+++++|++ .+++. .+ ..|.||||+|+..|+.+++++|+ ++|+++|..|
T Consensus 91 ~~~g~t~L~~Aa~~~-~~~~~~L~~--~~~n~----~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d 163 (373)
T 2fo1_E 91 EPESPIKLHTEAAGS-YAITEPITR--ESVNI----IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMD 163 (373)
T ss_dssp ---CCCHHHHHHHSS-SCCCSCCST--TTTTT----CCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCC
T ss_pred CCCCccHHHHHhcCC-chHHHHhcc--ccccc----cCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCC
Confidence 346778888888854 467777754 23333 44 67888888888888877776665 7889999888
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHH
Q 035705 381 AAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFV 460 (758)
Q Consensus 381 ~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a 460 (758)
..|.||||+|+..|+.++|++|+++|++++..+..| .||||+|
T Consensus 164 ~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g-------------------------------------~t~L~~A 206 (373)
T 2fo1_E 164 CDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSE-------------------------------------RSALHQA 206 (373)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTC-------------------------------------CCHHHHH
T ss_pred CCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCC-------------------------------------CCHHHHH
Confidence 889999999999999999999988888877665554 4677777
Q ss_pred HHcCCHHHHHHHHHhcC--CCCcccCCCCCcHHHHHHHcC---CHHHHHHHHhCCCCCCc--------CCCCCCcHHHHH
Q 035705 461 TQANDVDALKKLIEWAD--VDLDEQDADGFSAAMIAAAAG---HVEAFRLLLHAGANIKL--------QNKYGETAITLA 527 (758)
Q Consensus 461 ~~~~~~~~v~~Ll~~~~--~~~~~~~~~g~t~L~~A~~~g---~~~~v~~Ll~~g~~~~~--------~~~~g~t~L~~A 527 (758)
+..|+.+++++|++... .+++..+..|.||||+|+..+ +.+++++|+++|++++. .+..|.||||+|
T Consensus 207 ~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A 286 (373)
T 2fo1_E 207 AANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYA 286 (373)
T ss_dssp HHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHH
T ss_pred HHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHH
Confidence 88888899999988621 688889999999999999988 89999999999999886 344566666666
Q ss_pred HHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHH
Q 035705 528 ELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLI 607 (758)
Q Consensus 528 ~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll 607 (758)
+..|+.+++++|+...+.+++..|..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+
T Consensus 287 ~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll 366 (373)
T 2fo1_E 287 AQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 366 (373)
T ss_dssp HSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 66666666665555555566666666666666666666666666666666666666666666666666666666666666
Q ss_pred hCCCC
Q 035705 608 SSGAK 612 (758)
Q Consensus 608 ~~gad 612 (758)
++|++
T Consensus 367 ~~~a~ 371 (373)
T 2fo1_E 367 RCRPE 371 (373)
T ss_dssp TTC--
T ss_pred hcCcc
Confidence 66554
No 10
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=5.9e-43 Score=371.24 Aligned_cols=288 Identities=20% Similarity=0.183 Sum_probs=234.7
Q ss_pred hHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHc
Q 035705 315 TLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRT-AAGETAAMICARY 393 (758)
Q Consensus 315 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~ 393 (758)
+++.-+...|+++++++++... .+..|.||||+|+..+. +++++|+. .+++..| ..|+||||+|+..
T Consensus 68 ~~~~~~~~~g~~~~~~~~~~~~---------~~~~g~t~L~~Aa~~~~-~~~~~L~~--~~~n~~d~~~g~t~Lh~Aa~~ 135 (373)
T 2fo1_E 68 GYGNGNDFLGDFNHTNLQIPTE---------PEPESPIKLHTEAAGSY-AITEPITR--ESVNIIDPRHNRTVLHWIASN 135 (373)
T ss_dssp -----------------------------------CCCHHHHHHHSSS-CCCSCCST--TTTTTCCCSSCCCHHHHHHCT
T ss_pred ccCCCCCccccccccccccccC---------CCCCCccHHHHHhcCCc-hHHHHhcc--ccccccCCcCCCCHHHHHHHC
Confidence 3456677788899988887542 45789999999999554 78888765 5778788 7899999999999
Q ss_pred CCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 035705 394 KHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLI 473 (758)
Q Consensus 394 g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll 473 (758)
|+.+++++|+.. .++.|++.|++++..+..|.||||+|+..|+.+++++|+
T Consensus 136 g~~~~v~~Ll~~-----------------------------~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll 186 (373)
T 2fo1_E 136 SSAEKSEDLIVH-----------------------------EAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLM 186 (373)
T ss_dssp TCCSCCTTHHHH-----------------------------HHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHH-----------------------------HHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHH
Confidence 999998888743 345677888888888888899999999999999999999
Q ss_pred HhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCC---CCCCcCCCCCCcHHHHHHHcC---ChhHHHHHHHhhcccc
Q 035705 474 EWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAG---ANIKLQNKYGETAITLAELNR---NGEVLEQVILEYALEE 547 (758)
Q Consensus 474 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~---~~~~v~~ll~~~~~~~ 547 (758)
+. |++++.++..|.||||+|+..|+.+++++|+++| ++++..+..|.||||+|+..+ +.+++++|+.. +.++
T Consensus 187 ~~-ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~-g~~~ 264 (373)
T 2fo1_E 187 KA-GADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEK-GAKV 264 (373)
T ss_dssp HT-TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHH-TCCS
T ss_pred HC-CCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHC-CCCc
Confidence 98 8999999999999999999999999999999998 899999999999999999998 88899877765 5555
Q ss_pred CC--------CCCCCchHHHHHHHcCCHHHHHHHHhcC-CCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCC
Q 035705 548 GQ--------KGSAGFYALHRAAKRGDFDLVHTLVSRC-YDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENA 618 (758)
Q Consensus 548 ~~--------~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~ 618 (758)
+. .+..|.||||+|+..|+.++|++|++++ +++|.+|..|+||||+|+..|+.++|++|+++|++++.+|.
T Consensus 265 ~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~ 344 (373)
T 2fo1_E 265 DYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDA 344 (373)
T ss_dssp SCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCS
T ss_pred ccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCC
Confidence 54 6779999999999999999999999886 99999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCc
Q 035705 619 RNETALALARENGNGNEAENVILDELALTLVLDGTY 654 (758)
Q Consensus 619 ~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~ 654 (758)
.|+||||+|+.+|+.+ ++++|+++|++
T Consensus 345 ~g~t~l~~A~~~g~~~---------iv~~Ll~~~a~ 371 (373)
T 2fo1_E 345 TDHTARQLAQANNHHN---------IVDIFDRCRPE 371 (373)
T ss_dssp SSCCHHHHHHHTTCHH---------HHHHHHTTC--
T ss_pred CCCCHHHHHHHcCCHH---------HHHHHHhcCcc
Confidence 9999999999999997 56677777765
No 11
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=4e-41 Score=343.11 Aligned_cols=263 Identities=22% Similarity=0.235 Sum_probs=171.7
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHHccCC-------CCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Q 035705 309 ILHNGRTLIHHAILCNNARAVELLLNCAVD-------KEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTA 381 (758)
Q Consensus 309 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-------~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~ 381 (758)
....|.|+||+|+..|+.+.+..++..+.. ....+...+..|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus 11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~ 90 (285)
T 3d9h_A 11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITA 90 (285)
T ss_dssp -------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECT
T ss_pred cchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence 356789999999999998877777665432 1223455788999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHH
Q 035705 382 AGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVT 461 (758)
Q Consensus 382 ~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~ 461 (758)
.|.||||+|+..|+.+++++|+++|++++..+..|. ||||+|+
T Consensus 91 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~-------------------------------------t~L~~A~ 133 (285)
T 3d9h_A 91 DHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWH-------------------------------------TPLFNAC 133 (285)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCC-------------------------------------CHHHHHH
T ss_pred CCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCC-------------------------------------CHHHHHH
Confidence 999999999999999999999999888776655554 6777778
Q ss_pred HcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHH
Q 035705 462 QANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVIL 541 (758)
Q Consensus 462 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~ 541 (758)
..|+.+++++|++. +++++..+ .|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+.
T Consensus 134 ~~~~~~~v~~Ll~~-g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~ 211 (285)
T 3d9h_A 134 VSGSWDCVNLLLQH-GASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE 211 (285)
T ss_dssp HHTCHHHHHHHHHT-TCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred HcCHHHHHHHHHHC-CCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 88888888888887 67777544 48888888888888888888888888888777777777666666666666665543
Q ss_pred hhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhC-CCCCC
Q 035705 542 EYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISS-GAKCD 614 (758)
Q Consensus 542 ~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~-gad~~ 614 (758)
. +.+++. +..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+ ++.+++++|+++ |+++.
T Consensus 212 ~-ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~ 281 (285)
T 3d9h_A 212 S-GADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP--PESPLAQLFLEREGASLP 281 (285)
T ss_dssp T-TCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC-----
T ss_pred C-CCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCCC
Confidence 3 444442 555666666666666666666666666666666666666666666 345666666665 55543
No 12
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.4e-40 Score=337.34 Aligned_cols=259 Identities=21% Similarity=0.206 Sum_probs=205.1
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcC-----------CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccC
Q 035705 347 SKTELRPIHLAARLGSAKILRRLISAG-----------CNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYA 415 (758)
Q Consensus 347 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g-----------~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~ 415 (758)
...|.|+||+|+..|+.+.+..++..+ ..++..|..|+||||+|+..|+.+++++|++.|++++.++..
T Consensus 12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~ 91 (285)
T 3d9h_A 12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITAD 91 (285)
T ss_dssp ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTT
T ss_pred chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC
Confidence 467899999999999977777766542 235667889999999999999999999999999888776655
Q ss_pred CCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHH
Q 035705 416 GQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAA 495 (758)
Q Consensus 416 g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~ 495 (758)
| .||||+|+..|+.+++++|++. |++++.++..|.||||+|+
T Consensus 92 g-------------------------------------~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~t~L~~A~ 133 (285)
T 3d9h_A 92 H-------------------------------------VSPLHEACLGGHLSCVKILLKH-GAQVNGVTADWHTPLFNAC 133 (285)
T ss_dssp C-------------------------------------CCHHHHHHHTTCHHHHHHHHHT-TCCSSCCCTTCCCHHHHHH
T ss_pred C-------------------------------------CCHHHHHHHCCcHHHHHHHHHC-CCCCCCCCCCCCCHHHHHH
Confidence 5 4688888999999999999998 8999999999999999999
Q ss_pred HcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHh
Q 035705 496 AAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVS 575 (758)
Q Consensus 496 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 575 (758)
..|+.+++++|+++|++++..+ .|.||||+|+..|+.+++++|+. .+.+++..|..|.||||+|+..|+.+++++|++
T Consensus 134 ~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~ 211 (285)
T 3d9h_A 134 VSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIA-YGGNIDHKISHLGTPLYLACENQQRACVKKLLE 211 (285)
T ss_dssp HHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHH-TTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred HcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999998655 49999999999999999997774 567889999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhC-CCc
Q 035705 576 RCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLD-GTY 654 (758)
Q Consensus 576 ~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~-g~~ 654 (758)
+|++++. |..|+||||+|+..++.+++++|+++|+|++.+|..|+||||+|+. +.+ ++++|+++ |++
T Consensus 212 ~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~--~~~---------~~~~Ll~~~~a~ 279 (285)
T 3d9h_A 212 SGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPP--ESP---------LAQLFLEREGAS 279 (285)
T ss_dssp TTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCT--TSH---------HHHHHHHHC---
T ss_pred CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhcC--ccH---------HHHHHHHhhccC
Confidence 9999995 8999999999999999999999999999999999999999999994 344 55566666 666
Q ss_pred ccc
Q 035705 655 VKK 657 (758)
Q Consensus 655 ~~~ 657 (758)
+..
T Consensus 280 l~~ 282 (285)
T 3d9h_A 280 LPK 282 (285)
T ss_dssp ---
T ss_pred CCC
Confidence 544
No 13
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=3.6e-40 Score=331.91 Aligned_cols=247 Identities=18% Similarity=0.235 Sum_probs=159.6
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 035705 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICA 391 (758)
Q Consensus 312 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 391 (758)
+|+||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~----~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 77 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNI----ITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNAC 77 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSC----CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCC----cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence 355566666666666666666655555443 4555556666666666666666666656555555555556666665
Q ss_pred HcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHH
Q 035705 392 RYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKK 471 (758)
Q Consensus 392 ~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~ 471 (758)
..|+.+++++|+++|++++.. ..|.||||+|+..|+.+++++
T Consensus 78 ~~~~~~~v~~Ll~~g~~~~~~--------------------------------------~~g~t~L~~A~~~~~~~~v~~ 119 (261)
T 2xai_A 78 VSGSWDCVNLLLQHGASVQPE--------------------------------------SDLASPIHEAARRGHVECVNS 119 (261)
T ss_dssp HHTCHHHHHHHHHTTCCSSCS--------------------------------------CTTCCHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHCCCCCCCC--------------------------------------CCCCCHHHHHHHcCcHHHHHH
Confidence 555555555555555554321 112344555555555555555
Q ss_pred HHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCC
Q 035705 472 LIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKG 551 (758)
Q Consensus 472 Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~ 551 (758)
|++. |++++.++..|.||||+|+..|+.+++++|+++|+++ +. +
T Consensus 120 Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------------------------------~~-~ 163 (261)
T 2xai_A 120 LIAY-GGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV----------------------------------NQ-G 163 (261)
T ss_dssp HHHT-TCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCT----------------------------------TC-C
T ss_pred HHHc-CCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCC----------------------------------CC-C
Confidence 5554 4455555555555555555555555555555554444 32 4
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCC--------CCCCCCCCcH
Q 035705 552 SAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKC--------DIENARNETA 623 (758)
Q Consensus 552 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~--------~~~d~~g~t~ 623 (758)
..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..+ +++++|++++.++ +.+|..|+||
T Consensus 164 ~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~~~~l~~~~~~~~r~~~g~t~ 241 (261)
T 2xai_A 164 KGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLEREGPPSLMQLCRLRIRKCFGIQQ 241 (261)
T ss_dssp BTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTTC--THHHHHHHC-CCCCHHHHHHHHHHTTSCTTC
T ss_pred CCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCChhhhccccc--cHHHHHHhccCCccHHHHHHHHHHHHhchhc
Confidence 56778899999999999999999999999999999999999999654 5999999988754 4789999999
Q ss_pred HHHHHHCCChhhHHH
Q 035705 624 LALARENGNGNEAEN 638 (758)
Q Consensus 624 L~~A~~~~~~~~~~~ 638 (758)
+|+|.+...++.++.
T Consensus 242 l~~~~~~~~p~~l~~ 256 (261)
T 2xai_A 242 HHKITKLVLPEDLKQ 256 (261)
T ss_dssp GGGGGGSSSCHHHHH
T ss_pred cccCcccCCcHHHHH
Confidence 999999888875543
No 14
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=9.3e-41 Score=354.24 Aligned_cols=272 Identities=18% Similarity=0.164 Sum_probs=199.6
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 035705 310 LHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMI 389 (758)
Q Consensus 310 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 389 (758)
+..|.||||+|+..|+.++|++|++.|++++. .+..|.||||+|+..|+.+++++|+++|++++. ..|.||||+
T Consensus 17 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~----~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~ 90 (364)
T 3ljn_A 17 DDENMEKIHVAARKGQTDEVRRLIETGVSPTI----QNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHL 90 (364)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTC----CCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc----cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHHH
Confidence 55667777777777777777777777766654 566677777777777777777777777765443 356777777
Q ss_pred HHHcCCHHHHHHHHHC----CCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCC
Q 035705 390 CARYKHEECLKFLASE----GADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQAND 465 (758)
Q Consensus 390 A~~~g~~~iv~~Ll~~----g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~ 465 (758)
|+..|+.+++++|++. |++++. ++.......
T Consensus 91 A~~~g~~~~v~~Ll~~~~~~~~~~~~---------------------------~~~~~~~~~------------------ 125 (364)
T 3ljn_A 91 AVMANKTDLVVALVEGAKERGQMPES---------------------------LLNECDERE------------------ 125 (364)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCHHH---------------------------HHTCCCCCC------------------
T ss_pred HHHcCCHHHHHHHHHhccccCCCHHH---------------------------HHhhcchHh------------------
Confidence 7777777777777766 333211 000000000
Q ss_pred HHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcC--CHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhh
Q 035705 466 VDALKKLIEWADVDLDEQDADGFSAAMIAAAAG--HVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEY 543 (758)
Q Consensus 466 ~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~ 543 (758)
....+++..+..|.||||+|+..| +.++|++|+++|++++..|..|.||||+|+..|+.+++++|+...
T Consensus 126 ---------~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g 196 (364)
T 3ljn_A 126 ---------VNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTV 196 (364)
T ss_dssp ---------EEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHC
T ss_pred ---------hhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 001233446777888888888888 788888888888888888888888888888888888887666543
Q ss_pred c----cccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCC----
Q 035705 544 A----LEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDI---- 615 (758)
Q Consensus 544 ~----~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~---- 615 (758)
. .+++..|..|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus 197 ~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~ 276 (364)
T 3ljn_A 197 PSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACP 276 (364)
T ss_dssp SCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCT
T ss_pred cccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCc
Confidence 2 22778888999999999999999999999999999999999999999999999999999999999887533
Q ss_pred --------CCCCCCcHHHHHHHCCChhhHHHHHH
Q 035705 616 --------ENARNETALALARENGNGNEAENVIL 641 (758)
Q Consensus 616 --------~d~~g~t~L~~A~~~~~~~~~~~ll~ 641 (758)
.+..|+|||+.|+..++.+.+..|+.
T Consensus 277 ~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~ 310 (364)
T 3ljn_A 277 YHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQ 310 (364)
T ss_dssp TBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHH
T ss_pred ccCcccccccccccccchhhhhccCHHHHHHHHH
Confidence 56778999999999988875554443
No 15
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1.7e-40 Score=352.13 Aligned_cols=266 Identities=18% Similarity=0.224 Sum_probs=216.6
Q ss_pred CCCCCchHHHHHHhcCCHHHHHHHHhCCCCCCcchhhhhhccccccccCCCCchhHHHHhcCCHHHHHHHHHcCCCCccc
Q 035705 176 RPQVSVHALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGVKMDIK 255 (758)
Q Consensus 176 ~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~d~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~ 255 (758)
.+..|.||||+|+..|+.++|++|+++|++++..+ ..|.||||+|+..|+.++|++|+++|++++.
T Consensus 16 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d-------------~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~- 81 (364)
T 3ljn_A 16 SDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQN-------------RFGCTALHLACKFGCVDTAKYLASVGEVHSL- 81 (364)
T ss_dssp CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCC-------------TTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC-
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccC-------------CCCCcHHHHHHHcCCHHHHHHHHHCCCCccc-
Confidence 45668999999999999999999999999999988 4699999999999999999999999996653
Q ss_pred cccCccccccccchhhhhhccccccccccchhhhhhhchHHHHHHHhhccCCCCCCCCchHHHHHHHcCCHHHHHHHHHc
Q 035705 256 VRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLNC 335 (758)
Q Consensus 256 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 335 (758)
..|.||||+|+..|+.+++++|++.
T Consensus 82 -------------------------------------------------------~~g~t~L~~A~~~g~~~~v~~Ll~~ 106 (364)
T 3ljn_A 82 -------------------------------------------------------WHGQKPIHLAVMANKTDLVVALVEG 106 (364)
T ss_dssp -------------------------------------------------------BTTBCHHHHHHHTTCHHHHHHHHHH
T ss_pred -------------------------------------------------------cCCCCHHHHHHHcCCHHHHHHHHHh
Confidence 3688999999999999999999998
Q ss_pred ----cCCCCC-------------CcccCCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH
Q 035705 336 ----AVDKEF-------------PVQTYSKTELRPIHLAARLG--SAKILRRLISAGCNINSRTAAGETAAMICARYKHE 396 (758)
Q Consensus 336 ----g~~~~~-------------~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~ 396 (758)
|++++. ..+..+..|.||||+|+..| +.+++++|+++|++++..|..|.||||+|+..|+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~ 186 (364)
T 3ljn_A 107 AKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNR 186 (364)
T ss_dssp HHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred ccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCH
Confidence 555432 11125678999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhc
Q 035705 397 ECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWA 476 (758)
Q Consensus 397 ~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~ 476 (758)
+++++|+++|++.. +.+++..+..|.||||+|+..|+.+++++|+++
T Consensus 187 ~~v~~Ll~~g~~~~--------------------------------~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~- 233 (364)
T 3ljn_A 187 EALDLMMDTVPSKS--------------------------------SLRLDYANKQGNSHLHWAILINWEDVAMRFVEM- 233 (364)
T ss_dssp HHHHHHHHHCSCSS--------------------------------SCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTT-
T ss_pred HHHHHHHhcccccc--------------------------------cccccccCCCCCcHHHHHHHcCCHHHHHHHHHc-
Confidence 99999999988721 112334455566788888888899999999987
Q ss_pred CCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCc------------CCCCCCcHHHHHHHcCChhHHHHHHHhh
Q 035705 477 DVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKL------------QNKYGETAITLAELNRNGEVLEQVILEY 543 (758)
Q Consensus 477 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------------~~~~g~t~L~~A~~~~~~~~v~~ll~~~ 543 (758)
|++++.+|..|.||||+|+..|+.+++++|+++|++++. .+..++||+++|+..|+.+.+..|+.+.
T Consensus 234 gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~ 312 (364)
T 3ljn_A 234 GIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEK 312 (364)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHHH
Confidence 889999999999999999999999999999988876533 2334444555555444444444444433
No 16
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=3.8e-39 Score=322.86 Aligned_cols=206 Identities=22% Similarity=0.256 Sum_probs=178.2
Q ss_pred HHHHHHHHHcCCCccc-CCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q 035705 433 QQAVVDSIRSGNIIQS-SNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGA 511 (758)
Q Consensus 433 ~~~~~~ll~~g~~~~~-~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~ 511 (758)
.+++++|++.|.+++. .+..|.||||+|+..|+.+++++|++. |++++.++..|.||||+|+..|+.+++++|+++|+
T Consensus 36 ~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~ 114 (253)
T 1yyh_A 36 PAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 114 (253)
T ss_dssp ----------------CCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTT
T ss_pred hHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 3334444444444322 356677899999999999999999998 89999999999999999999999999999999987
Q ss_pred -CCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcH
Q 035705 512 -NIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTP 590 (758)
Q Consensus 512 -~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tp 590 (758)
+++..+..|.||||+|+..|+.+++++|+. .+.+++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||
T Consensus 115 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tp 193 (253)
T 1yyh_A 115 TDLDARMHDGTTPLILAARLAVEGMLEDLIN-SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 193 (253)
T ss_dssp SCTTCCCTTCCCHHHHHHHHTCSSHHHHHHH-TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCccccCCCCCcHHHHHHHcChHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence 899999999999999999999999997776 678889999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHH
Q 035705 591 LMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVI 640 (758)
Q Consensus 591 L~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll 640 (758)
||+|+..|+.+++++|+++|++++.+|..|+||||+|+++|+.+++++|.
T Consensus 194 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~ 243 (253)
T 1yyh_A 194 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 243 (253)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999998666443
No 17
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=2.6e-39 Score=330.41 Aligned_cols=262 Identities=18% Similarity=0.147 Sum_probs=173.7
Q ss_pred ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHH
Q 035705 344 QTYSKTELRPIHLAARLGSAKILRRLISAGCN---INSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCAN 420 (758)
Q Consensus 344 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l 420 (758)
+..+..|.||||+|+..|+.+++++|+++|++ ++.++..|.||||+|+..|+.+++++|+++|++++..+..|
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g---- 78 (282)
T 1oy3_D 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGG---- 78 (282)
T ss_dssp CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTS----
T ss_pred CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC----
Confidence 34667777777777777777777777777776 66777777777777777777777777777777665544333
Q ss_pred HHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCH
Q 035705 421 SIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHV 500 (758)
Q Consensus 421 ~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~ 500 (758)
.||||+|+..|+.+++++|++. +.+.+......
T Consensus 79 ---------------------------------~tpL~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~------------- 111 (282)
T 1oy3_D 79 ---------------------------------HTALHLACRVRAHTCACVLLQP-RPSHPRDASDT------------- 111 (282)
T ss_dssp ---------------------------------CCHHHHHTTTTCHHHHHHHSSS-CCSSCCCC----------------
T ss_pred ---------------------------------CCHHHHHHHcCCcchhHhhhcc-CCCCchhhHHH-------------
Confidence 3566666677777777777765 34332211110
Q ss_pred HHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCC
Q 035705 501 EAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDV 580 (758)
Q Consensus 501 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~ 580 (758)
++..+ .......+.++++.++..+....+..++...+.+++..+..|.||||+|+..|+.+++++|+++|+++
T Consensus 112 -----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~ 184 (282)
T 1oy3_D 112 -----YLTQS--QDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL 184 (282)
T ss_dssp ---------------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT
T ss_pred -----Hhhcc--cccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 00000 11123446677777777776666666777778889999999999999999999999999999999999
Q ss_pred CCCCCC-CCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCcccccc
Q 035705 581 NASDAD-GYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHT 659 (758)
Q Consensus 581 n~~d~~-g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~d 659 (758)
+.++.. |+||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+..++.+ ++++|+++|++++.+|
T Consensus 185 ~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~---------~v~~Ll~~ga~~~~~~ 255 (282)
T 1oy3_D 185 NKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPI---------LARLLRAHGAPEPEDG 255 (282)
T ss_dssp TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHH---------HHHHHHHTTCCCCCCC
T ss_pred CCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcH---------HHHHHHHcCCCcCcCC
Confidence 999864 999999999999999999999999999999999999999999999986 6778899999999999
Q ss_pred ccCCCcchHHHHH
Q 035705 660 KCGKGSPHVKLLK 672 (758)
Q Consensus 660 ~~g~t~l~~a~~~ 672 (758)
..|+||+++|...
T Consensus 256 ~~g~tpl~~a~~~ 268 (282)
T 1oy3_D 256 GDKLSPCSSSGSD 268 (282)
T ss_dssp -------------
T ss_pred CcccccccccCCc
Confidence 9999999998654
No 18
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=3e-39 Score=329.94 Aligned_cols=267 Identities=20% Similarity=0.253 Sum_probs=187.0
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 035705 309 ILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAM 388 (758)
Q Consensus 309 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 388 (758)
.+..|.||||+|+..|+.++|++|++.|++++. ++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||
T Consensus 5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~ 83 (282)
T 1oy3_D 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEY-LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALH 83 (282)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGG-GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccc-ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence 578899999999999999999999999988432 3447889999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHH
Q 035705 389 ICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDA 468 (758)
Q Consensus 389 ~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~ 468 (758)
+|+..|+.+++++|+++|++........... .+ .......+.++++.++..+....
T Consensus 84 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~----------------------~~--~~~~~~~~~~~~~~~~~~~~~~~ 139 (282)
T 1oy3_D 84 LACRVRAHTCACVLLQPRPSHPRDASDTYLT----------------------QS--QDCTPDTSHAPAAVDSQPNPENE 139 (282)
T ss_dssp HHTTTTCHHHHHHHSSSCCSSCCCC-------------------------------------------------------
T ss_pred HHHHcCCcchhHhhhccCCCCchhhHHHHhh----------------------cc--cccCcchhcchhhhccccccchh
Confidence 9999999999999999998765332111000 00 01111233455555555544444
Q ss_pred HHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccC
Q 035705 469 LKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEG 548 (758)
Q Consensus 469 v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~ 548 (758)
+..++...+.+++.++..|.||||+|+..|+.+++++|+++|++++..+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~------------------------------ 189 (282)
T 1oy3_D 140 EEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEP------------------------------ 189 (282)
T ss_dssp ----CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT------------------------------
T ss_pred hhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC------------------------------
Confidence 44343334566677777777777777777777777777777776665542
Q ss_pred CCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q 035705 549 QKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALAR 628 (758)
Q Consensus 549 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~ 628 (758)
..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|++++.+|..|.|||++|.
T Consensus 190 ---~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~ 266 (282)
T 1oy3_D 190 ---TCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSG 266 (282)
T ss_dssp ---TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC-----------
T ss_pred ---CCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccC
Confidence 23777888888899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HCCCh
Q 035705 629 ENGNG 633 (758)
Q Consensus 629 ~~~~~ 633 (758)
.....
T Consensus 267 ~~~~~ 271 (282)
T 1oy3_D 267 SDSDS 271 (282)
T ss_dssp -----
T ss_pred Ccccc
Confidence 77654
No 19
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=4.9e-39 Score=323.60 Aligned_cols=239 Identities=18% Similarity=0.182 Sum_probs=192.6
Q ss_pred hhhhhchHHHHHHHhhc-cCCC-CCCCCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHH
Q 035705 288 VEYFESSGAILHMLFQH-ISPN-ILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKI 365 (758)
Q Consensus 288 ~~~~~~~~~~~~~ll~~-~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~ 365 (758)
.....++.+++++|++. .+++ .+..|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.++
T Consensus 9 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~----~~~~g~t~L~~A~~~~~~~~ 84 (261)
T 2xai_A 9 EAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG----VTADWHTPLFNACVSGSWDC 84 (261)
T ss_dssp HHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC----CCTTSCCHHHHHHHHTCHHH
T ss_pred HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC----CCCCCCCHHHHHHHcCCHHH
Confidence 34456778999999998 3444 477899999999999999999999999999876 68899999999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCC
Q 035705 366 LRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNI 445 (758)
Q Consensus 366 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~ 445 (758)
+++|+++|++++. +..|.||||+|+..|+.+++++|+++|++++..+..|.
T Consensus 85 v~~Ll~~g~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~---------------------------- 135 (261)
T 2xai_A 85 VNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG---------------------------- 135 (261)
T ss_dssp HHHHHHTTCCSSC-SCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTB----------------------------
T ss_pred HHHHHHCCCCCCC-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCC----------------------------
Confidence 9999999999985 45599999999999999999999999998877665554
Q ss_pred cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHH
Q 035705 446 IQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAIT 525 (758)
Q Consensus 446 ~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 525 (758)
||||+|+..++.+++++|++. |++++. +..|.||||+|+..|+.+++++|+++|++++.+|..|+||||
T Consensus 136 ---------t~L~~A~~~~~~~~v~~Ll~~-g~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~ 204 (261)
T 2xai_A 136 ---------TPLYLACENQQRACVKKLLES-GADVNQ-GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVE 204 (261)
T ss_dssp ---------CHHHHHHHTTCHHHHHHHHHH-TCCTTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCGGG
T ss_pred ---------CHHHHHHHhCCHHHHHHHHHc-CCCCCC-CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCChhh
Confidence 677778888999999999998 788885 788999999999999999999999999999999999999988
Q ss_pred HHHHcCChhHHHHHHHhhc-------cccCCCCCCCchHHHHHHHcCCHHHHHH
Q 035705 526 LAELNRNGEVLEQVILEYA-------LEEGQKGSAGFYALHRAAKRGDFDLVHT 572 (758)
Q Consensus 526 ~A~~~~~~~~v~~ll~~~~-------~~~~~~~~~g~t~L~~A~~~g~~~~v~~ 572 (758)
+|+..+ ++++.|+.... .....++..|.||+|.|.+...++.++.
T Consensus 205 ~A~~~~--~~~~~ll~~~~~~~l~~~~~~~~r~~~g~t~l~~~~~~~~p~~l~~ 256 (261)
T 2xai_A 205 LVPPES--PLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDLKQ 256 (261)
T ss_dssp GSCTTC--THHHHHHHC-CCCCHHHHHHHHHHTTSCTTCGGGGGGSSSCHHHHH
T ss_pred hccccc--cHHHHHHhccCCccHHHHHHHHHHHHhchhccccCcccCCcHHHHH
Confidence 887543 45555554322 1223334445555555554444444433
No 20
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=5.4e-38 Score=311.59 Aligned_cols=225 Identities=26% Similarity=0.376 Sum_probs=189.4
Q ss_pred cccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHH
Q 035705 343 VQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSI 422 (758)
Q Consensus 343 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~ 422 (758)
++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|
T Consensus 4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g------ 77 (237)
T 3b7b_A 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEG------ 77 (237)
T ss_dssp CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTS------
T ss_pred cccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCC------
Confidence 34477888899999999999999999999888888888888899999998888888888888887766554444
Q ss_pred HHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHH
Q 035705 423 AKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEA 502 (758)
Q Consensus 423 a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~ 502 (758)
.||||+|+..|+.+++++|++..+.+++..+..|.||||+|+..++.++
T Consensus 78 -------------------------------~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~ 126 (237)
T 3b7b_A 78 -------------------------------STCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDL 126 (237)
T ss_dssp -------------------------------CCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred -------------------------------CcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHH
Confidence 4677777788888888888887447888888888888888888888888
Q ss_pred HHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCC
Q 035705 503 FRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNA 582 (758)
Q Consensus 503 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~ 582 (758)
+++|+++|++++.++. .|.||||+|+..|+.+++++|+++|++++.
T Consensus 127 ~~~Ll~~g~~~~~~~~----------------------------------~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~ 172 (237)
T 3b7b_A 127 VKLLLSKGSDINIRDN----------------------------------EENICLHWAAFSGCVDIAEILLAAKCDLHA 172 (237)
T ss_dssp HHHHHHTTCCTTCCCT----------------------------------TSCCHHHHHHHHCCHHHHHHHHTTTCCTTC
T ss_pred HHHHHHCCCCCCccCC----------------------------------CCCCHHHHHHHCCCHHHHHHHHHcCCCCCC
Confidence 8888888887766554 455667777788888999999999999999
Q ss_pred CCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHH
Q 035705 583 SDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAEN 638 (758)
Q Consensus 583 ~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ 638 (758)
+|..|+||||+|+..++.+++++|+++|+|++.+|..|+||||+|+.+++.+.+..
T Consensus 173 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~ 228 (237)
T 3b7b_A 173 VNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQ 228 (237)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHH
T ss_pred cCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998865553
No 21
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.2e-38 Score=319.33 Aligned_cols=229 Identities=20% Similarity=0.296 Sum_probs=156.9
Q ss_pred CCCCCCcHHHHHHHcC-------------CHHHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC
Q 035705 346 YSKTELRPIHLAARLG-------------SAKILRRLISAGCNINS-RTAAGETAAMICARYKHEECLKFLASEGADLGL 411 (758)
Q Consensus 346 ~~~~g~t~L~~A~~~g-------------~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~ 411 (758)
+|..|.||||+|+..| +.+++++|+++|++++. .|..|.||||+|+..|+.+++++|+++|++++.
T Consensus 6 ~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~ 85 (253)
T 1yyh_A 6 RGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANI 85 (253)
T ss_dssp ----------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred CCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 5566666666666655 77788888888777754 467788888888888888888888877777666
Q ss_pred cccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHH
Q 035705 412 INYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAA 491 (758)
Q Consensus 412 ~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L 491 (758)
.+..|. ||||+|+..|+.+++++|++....+++..+..|.|||
T Consensus 86 ~~~~g~-------------------------------------t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L 128 (253)
T 1yyh_A 86 QDNMGR-------------------------------------TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL 128 (253)
T ss_dssp CCTTSC-------------------------------------CHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHH
T ss_pred CCCCCC-------------------------------------CHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHH
Confidence 554443 5666667777777777777774447777777888888
Q ss_pred HHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHH
Q 035705 492 MIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVH 571 (758)
Q Consensus 492 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~ 571 (758)
|+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+. .+.+++..|..|.||||+|+..|+.++++
T Consensus 129 ~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpL~~A~~~~~~~~v~ 207 (253)
T 1yyh_A 129 ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAK 207 (253)
T ss_dssp HHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHCCCHHHHH
Confidence 88888888888888888888888888888888888888888888876654 46777778888899999999999999999
Q ss_pred HHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCC
Q 035705 572 TLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAK 612 (758)
Q Consensus 572 ~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad 612 (758)
+|+++|++++.+|..|+||||+|+..|+.+++++|.+....
T Consensus 208 ~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~~ 248 (253)
T 1yyh_A 208 VLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHH 248 (253)
T ss_dssp HHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC----
T ss_pred HHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999986543
No 22
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=8.1e-38 Score=310.32 Aligned_cols=218 Identities=22% Similarity=0.286 Sum_probs=209.3
Q ss_pred CCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcH
Q 035705 444 NIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETA 523 (758)
Q Consensus 444 ~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~ 523 (758)
.+++..+..|.||||+|+..|+.+++++|++. |++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||
T Consensus 2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 80 (237)
T 3b7b_A 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQA-GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTC 80 (237)
T ss_dssp CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCH
T ss_pred CCcccccCCCCCHHHHHHHcCcHHHHHHHHHc-CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcH
Confidence 35677888999999999999999999999998 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHH
Q 035705 524 ITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVC 603 (758)
Q Consensus 524 L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv 603 (758)
||+|+..|+.+++++|+.....+++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++
T Consensus 81 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~ 160 (237)
T 3b7b_A 81 LHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIA 160 (237)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHH
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHH
Confidence 99999999999999999888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCccccccccCCCcchHHHH
Q 035705 604 QLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTKCGKGSPHVKLL 671 (758)
Q Consensus 604 ~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~d~~g~t~l~~a~~ 671 (758)
++|+++|++++.+|..|+||||+|+..++.+ ++++|+++|++++.+|..|+||||+|+.
T Consensus 161 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~---------~v~~Ll~~gad~~~~d~~g~t~l~~A~~ 219 (237)
T 3b7b_A 161 EILLAAKCDLHAVNIHGDSPLHIAARENRYD---------CVVLFLSRDSDVTLKNKEGETPLQCASL 219 (237)
T ss_dssp HHHHTTTCCTTCCCTTCCCHHHHHHHTTCHH---------HHHHHHTTTCCTTCCCTTSCCHHHHSCT
T ss_pred HHHHHcCCCCCCcCCCCCCHHHHHHHhCCHh---------HHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence 9999999999999999999999999999986 6678999999999999999999999855
No 23
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=4.1e-38 Score=313.36 Aligned_cols=224 Identities=22% Similarity=0.330 Sum_probs=151.2
Q ss_pred cCCCCCCcHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHH
Q 035705 345 TYSKTELRPIHLAARLGSAKILRRLIS----AGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCAN 420 (758)
Q Consensus 345 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l 420 (758)
..|..|.||||+|+..|+.+++++|++ .|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g---- 79 (241)
T 1k1a_A 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHG---- 79 (241)
T ss_dssp ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS----
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCC----
Confidence 356778888888888888888887776 677888888888888888888888888888888777766554444
Q ss_pred HHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCC----CCcccCCCCCcHHHHHHH
Q 035705 421 SIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADV----DLDEQDADGFSAAMIAAA 496 (758)
Q Consensus 421 ~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~----~~~~~~~~g~t~L~~A~~ 496 (758)
.||||+|+..++.+++++|++. +. +++..+..|.||||+|+.
T Consensus 80 ---------------------------------~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~g~t~L~~A~~ 125 (241)
T 1k1a_A 80 ---------------------------------QTAAHLACEHRSPTCLRALLDS-AAPGTLDLEARNYDGLTALHVAVN 125 (241)
T ss_dssp ---------------------------------CCHHHHHHHTTCHHHHHHHHHH-SCTTSCCTTCCCTTSCCHHHHHHH
T ss_pred ---------------------------------CCHHHHHHHcCCHHHHHHHHHc-CCCccccccccCcCCCcHHHHHHH
Confidence 3566666777777777777776 33 777778888888888888
Q ss_pred cCCHHHHHHHHhCCCCCCcCC-CCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHh
Q 035705 497 AGHVEAFRLLLHAGANIKLQN-KYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVS 575 (758)
Q Consensus 497 ~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 575 (758)
.|+.+++++|+++|++++..+ ..|.| |||+|+..|+.+++++|++
T Consensus 126 ~~~~~~~~~Ll~~g~~~~~~~~~~g~t----------------------------------~L~~A~~~~~~~~v~~Ll~ 171 (241)
T 1k1a_A 126 TECQETVQLLLERGADIDAVDIKSGRS----------------------------------PLIHAVENNSLSMVQLLLQ 171 (241)
T ss_dssp HTCHHHHHHHHHTTCCTTCCCTTTCCC----------------------------------HHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCCcccccccCCCc----------------------------------HHHHHHHcCCHHHHHHHHH
Confidence 888888888888888877665 44444 4455555555555555555
Q ss_pred cCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHH
Q 035705 576 RCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVI 640 (758)
Q Consensus 576 ~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll 640 (758)
+|++++.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+..|+.++++.|+
T Consensus 172 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~ 236 (241)
T 1k1a_A 172 HGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKA 236 (241)
T ss_dssp TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC--
T ss_pred cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhc
Confidence 55555555555555555555555555555555555555555555555655555555555555443
No 24
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.5e-39 Score=321.66 Aligned_cols=224 Identities=22% Similarity=0.239 Sum_probs=168.5
Q ss_pred CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHH
Q 035705 378 SRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPL 457 (758)
Q Consensus 378 ~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L 457 (758)
.+|..+.+||+.|+..|+.++|++|++.|++..... ...++..+..+.|||
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~-----------------------------~~~~~~~~~~~~t~L 56 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDA-----------------------------EDTVSAADPEFCHPL 56 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC---------------------------------------------------
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccc-----------------------------cccccccCccCCCHH
Confidence 355566778888888888888888888776532110 111334456677888
Q ss_pred HHHHHcCCHH-HHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHH
Q 035705 458 MFVTQANDVD-ALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVL 536 (758)
Q Consensus 458 ~~a~~~~~~~-~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v 536 (758)
+.|+..+..+ +++.|++. |+++|.+|.+|.||||+|+..|+.++|++|++.|++++..+..|.||+++|+..++.+++
T Consensus 57 ~~a~~~~~~~~~v~~Ll~~-Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~ 135 (269)
T 4b93_B 57 CQCPKCAPAQKRLAKVPAS-GLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVV 135 (269)
T ss_dssp ------------------C-CCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHH
T ss_pred HHHHHhCCHHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHH
Confidence 8888877654 77888887 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCC
Q 035705 537 EQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIE 616 (758)
Q Consensus 537 ~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~ 616 (758)
+.|+ +.+.+++..|..|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.++|++|+++|+|++.+
T Consensus 136 ~~Ll-~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~ 214 (269)
T 4b93_B 136 KCLL-DSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVL 214 (269)
T ss_dssp HHHH-HTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCC
T ss_pred HHHH-HCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCc
Confidence 8666 457888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHCCC
Q 035705 617 NARNETALALARENGN 632 (758)
Q Consensus 617 d~~g~t~L~~A~~~~~ 632 (758)
|..|+||||+|++++.
T Consensus 215 d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 215 NKRQRTAVDCAEQNSK 230 (269)
T ss_dssp CTTSCCSGGGSCTTCH
T ss_pred CCCCCCHHHHHHhCCc
Confidence 9999999999987764
No 25
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=3.2e-38 Score=325.22 Aligned_cols=265 Identities=23% Similarity=0.290 Sum_probs=215.9
Q ss_pred HHHHcCCHHHHHHHHHccCCCCCCccc-----CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 035705 319 HAILCNNARAVELLLNCAVDKEFPVQT-----YSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARY 393 (758)
Q Consensus 319 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~-----~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 393 (758)
.++..++.+.++.++....++...... .+..+.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 83 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACID 83 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence 466777778788787766554432211 233567899999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 035705 394 KHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLI 473 (758)
Q Consensus 394 g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll 473 (758)
|+.+++++|+++|++++..+..|. ||||+|+..|+.+++++|+
T Consensus 84 g~~~~v~~Ll~~ga~~~~~~~~g~-------------------------------------tpL~~A~~~g~~~~v~~Ll 126 (299)
T 1s70_B 84 DNVDMVKFLVENGANINQPDNEGW-------------------------------------IPLHAAASCGYLDIAEYLI 126 (299)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSC-------------------------------------CHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCC-------------------------------------cHHHHHHHcCCHHHHHHHH
Confidence 999999999998888776655554 6777777888888888888
Q ss_pred HhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHh-CCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCC
Q 035705 474 EWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLH-AGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGS 552 (758)
Q Consensus 474 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~ 552 (758)
++ |++++..+..|.||||+|+..++.++++.++. .|.+++..+..+.++++. .+..++..........+.
T Consensus 127 ~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~ 197 (299)
T 1s70_B 127 SQ-GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLR--------DARQWLNSGHINDVRHAK 197 (299)
T ss_dssp HT-TCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--------HHHHHHHHTCCCCCCCTT
T ss_pred hC-CCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHH--------HHHHHHhccCcchhhhcC
Confidence 87 78888888888888888888888888887774 466665544444444332 344566666666667788
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Q 035705 553 AGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARE 629 (758)
Q Consensus 553 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~ 629 (758)
.|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|+||||+|++
T Consensus 198 ~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~ 274 (299)
T 1s70_B 198 SGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE 274 (299)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred CCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999965
No 26
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=4.3e-37 Score=305.99 Aligned_cols=218 Identities=24% Similarity=0.263 Sum_probs=202.7
Q ss_pred ccCCCCCCcHHHHHHHcCCHHHHHHHHH---hcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcH
Q 035705 447 QSSNASRFSPLMFVTQANDVDALKKLIE---WADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETA 523 (758)
Q Consensus 447 ~~~~~~~~t~L~~a~~~~~~~~v~~Ll~---~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~ 523 (758)
+.+|..|.||||+|+..|+.+++++|++ ..+.+++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 82 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA 82 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence 4678889999999999999999999998 2589999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChhHHHHHHHhhc---cccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHHHHcCc
Q 035705 524 ITLAELNRNGEVLEQVILEYA---LEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASD-ADGYTPLMLAAKSGH 599 (758)
Q Consensus 524 L~~A~~~~~~~~v~~ll~~~~---~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d-~~g~tpL~~A~~~~~ 599 (758)
||+|+..|+.+++++|+.... .+++..+..|.||||+|+..|+.+++++|+++|++++..+ ..|+||||+|+..|+
T Consensus 83 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~ 162 (241)
T 1k1a_A 83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS 162 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCC
Confidence 999999999999999887765 3778889999999999999999999999999999999999 899999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCccccccccCCCcchHHHHHH
Q 035705 600 GSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTKCGKGSPHVKLLKM 673 (758)
Q Consensus 600 ~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~d~~g~t~l~~a~~~~ 673 (758)
.+++++|+++|++++.+|..|+||||+|+..|+.+ ++++|+++|++++.+|..|+||+++|+...
T Consensus 163 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~---------~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~ 227 (241)
T 1k1a_A 163 LSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLP---------LVRTLVRSGADSSLKNCHNDTPLMVARSRR 227 (241)
T ss_dssp HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHH---------HHHHHHHTTCCTTCCCTTSCCTTTTCSSHH
T ss_pred HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHH---------HHHHHHhcCCCCCCcCCCCCCHHHHHHhcC
Confidence 99999999999999999999999999999999986 667888999999999999999999986543
No 27
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=4.9e-37 Score=303.35 Aligned_cols=155 Identities=21% Similarity=0.257 Sum_probs=85.1
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhH
Q 035705 456 PLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEV 535 (758)
Q Consensus 456 ~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 535 (758)
|||+|+..|+.+++++|+++ |++++.++..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..|+.++
T Consensus 76 ~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 154 (231)
T 3aji_A 76 PLHIAASAGXDEIVKALLVK-GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKM 154 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred HHHHHHHcCHHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHH
Confidence 34444444444444444444 44445555555555555555555555555555555555544444444444444333333
Q ss_pred HHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCC
Q 035705 536 LEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAK 612 (758)
Q Consensus 536 v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad 612 (758)
+++|+. .+.+++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|++
T Consensus 155 v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~ 230 (231)
T 3aji_A 155 VHILLF-YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS 230 (231)
T ss_dssp HHHHHH-TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHh-cCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence 332222 2333333444555556666666666777777777777777777777777777766677777777766654
No 28
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=8.1e-37 Score=301.81 Aligned_cols=227 Identities=24% Similarity=0.273 Sum_probs=205.9
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHH
Q 035705 381 AAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFV 460 (758)
Q Consensus 381 ~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a 460 (758)
..+.|||+.|+..|+.+++++|++.+... ++..+..|.||||+|
T Consensus 4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~------------------------------------~~~~~~~g~t~L~~A 47 (231)
T 3aji_A 4 CVSNIMICNLAYSGKLDELKERILADKSL------------------------------------ATRTDQDSRTALHWA 47 (231)
T ss_dssp CCSSSHHHHHHHHTCHHHHHHHHHHCGGG------------------------------------GGCCCTTSCCHHHHH
T ss_pred ccccchHHHHHHhCCHHHHHHHHHhchhh------------------------------------hhcCCCCCCCHHHHH
Confidence 45788999999999999999998865431 234456677899999
Q ss_pred HHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHH
Q 035705 461 TQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVI 540 (758)
Q Consensus 461 ~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll 540 (758)
+..|+.+++++|++. |++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+
T Consensus 48 ~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll 126 (231)
T 3aji_A 48 CSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL 126 (231)
T ss_dssp HHHTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHcCcHHHHHHHHHh-CCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 999999999999998 8999999999999999999999999999999999999999999999999999999999999777
Q ss_pred HhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCC
Q 035705 541 LEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARN 620 (758)
Q Consensus 541 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g 620 (758)
. .+.+++..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|++++.+|..|
T Consensus 127 ~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g 205 (231)
T 3aji_A 127 E-GGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEE 205 (231)
T ss_dssp H-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTS
T ss_pred H-cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCC
Confidence 4 577888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCc
Q 035705 621 ETALALARENGNGNEAENVILDELALTLVLDGTY 654 (758)
Q Consensus 621 ~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~ 654 (758)
+||||+|+..++.+ ++++|.++|++
T Consensus 206 ~t~l~~A~~~~~~~---------i~~lL~~~~a~ 230 (231)
T 3aji_A 206 KTPLQVAKGGLGLI---------LKRLAEGEEAS 230 (231)
T ss_dssp CCHHHHSCHHHHHH---------HHHHHHHHHHC
T ss_pred CCHHHHHHhhHHHH---------HHHHHcccccc
Confidence 99999999888776 45566666654
No 29
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=5.4e-39 Score=333.95 Aligned_cols=272 Identities=13% Similarity=0.062 Sum_probs=194.6
Q ss_pred HcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHH
Q 035705 322 LCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKF 401 (758)
Q Consensus 322 ~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~ 401 (758)
.....++|++|+++|++++. .+..|.|+++ |+.++|++|+++|++++. ++++.|+......
T Consensus 28 ~~~~~dlv~~ll~~ga~i~~----~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~------~~~~~a~~~~~~~---- 88 (327)
T 1sw6_A 28 ITFTHDLTSDFLSSPLKIMK----ALPSPVVNDN-----EQKMKLEAFLQRLLFPEI------QEMPTSLNNDSSN---- 88 (327)
T ss_dssp EECCTTCCCSTTTSSCCCEE----CBCCCCCCCH-----HHHHHHHHHHHHHHC--------------------------
T ss_pred hhhcCchHHHHhhCCccccc----CCCCCCcccC-----chhHHHHHHHHhccCCcc------ccchHhhhccccc----
Confidence 35556667777777766554 5566666665 667777777777666432 3444443321000
Q ss_pred HHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCccc-CCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCC
Q 035705 402 LASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQS-SNASRFSPLMFVTQANDVDALKKLIEWADVDL 480 (758)
Q Consensus 402 Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~-~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~ 480 (758)
.-........+..|++ ......++++.|++.|++++. .+..|.||||+|+..|+.+++++|+++ |+++
T Consensus 89 ------~~~~~~~~~~~~~~~a----~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~-Gad~ 157 (327)
T 1sw6_A 89 ------RNSEGGSSNQQQQHVS----FDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH-GSNR 157 (327)
T ss_dssp ---------------------C----HHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHT-TCCT
T ss_pred ------ccccccCCccchhHHH----HHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCC
Confidence 0000011111223444 234566788888888888888 788999999999999999999999998 8999
Q ss_pred cccCCCCCcHHHHHHHcCC---HHHHHHHHhCC-CCCCcCCCCCCcHHHHHHH----cCChhHHHHHHHhh---------
Q 035705 481 DEQDADGFSAAMIAAAAGH---VEAFRLLLHAG-ANIKLQNKYGETAITLAEL----NRNGEVLEQVILEY--------- 543 (758)
Q Consensus 481 ~~~~~~g~t~L~~A~~~g~---~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~----~~~~~~v~~ll~~~--------- 543 (758)
+.+|..|.||||+|+..|+ .++++.|++.+ ++++.++..|+||||+|+. .|+.++++.|+...
T Consensus 158 n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~ 237 (327)
T 1sw6_A 158 LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQN 237 (327)
T ss_dssp TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGG
T ss_pred CCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999988 67888888776 7799999999999999999 89999999888764
Q ss_pred ----------ccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCC
Q 035705 544 ----------ALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKC 613 (758)
Q Consensus 544 ----------~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~ 613 (758)
+.+++..+..|.||||.|+. +++|+++ ++|.+|..|+||||+|+..|+.++|++|+++|+|+
T Consensus 238 ~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~ 309 (327)
T 1sw6_A 238 RPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADP 309 (327)
T ss_dssp CCEEEC----------------CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCT
T ss_pred hHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 78889999999999999996 9999998 79999999999999999999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHCC
Q 035705 614 DIENARNETALALARENG 631 (758)
Q Consensus 614 ~~~d~~g~t~L~~A~~~~ 631 (758)
+.+|..|+||||+|+++|
T Consensus 310 ~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 310 FIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp TCCCTTSCCGGGGTCC--
T ss_pred cccCCCCCCHHHHHHhcC
Confidence 999999999999998764
No 30
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=2.5e-37 Score=314.93 Aligned_cols=223 Identities=14% Similarity=0.104 Sum_probs=120.6
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHh
Q 035705 346 YSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKS 425 (758)
Q Consensus 346 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~ 425 (758)
.|..|.||||+|+..|+.+++++|+++|++++..+ |.||||+|+..|+.+++++|+++|++++..+..
T Consensus 27 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~---------- 94 (285)
T 3kea_A 27 ADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDK---------- 94 (285)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTT----------
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC----------
Confidence 44555555555555555555555555555555442 455555555555555555555555444433322
Q ss_pred cccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCC-CcHHHHHHHcCCHHHHH
Q 035705 426 SRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADG-FSAAMIAAAAGHVEAFR 504 (758)
Q Consensus 426 ~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g-~t~L~~A~~~g~~~~v~ 504 (758)
|.||||+|+..|+.+++++|+++ |++++.++..| .||||+|+..|+.++++
T Consensus 95 ---------------------------g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~~t~L~~A~~~~~~~~v~ 146 (285)
T 3kea_A 95 ---------------------------GNTALYYAVDSGNMQTVKLFVKK-NWRLMFYGKTGWKTSFYHAVMLNDVSIVS 146 (285)
T ss_dssp ---------------------------SCCHHHHHHHTTCHHHHHHHHHH-CGGGGGCSSSGGGSHHHHHHHTTCHHHHH
T ss_pred ---------------------------CCcHHHHHHHcCCHHHHHHHHhc-CCCCCccCCCCCCCHHHHHHHcCCHHHHH
Confidence 23455555555555555555555 55555555555 45555555555555555
Q ss_pred HHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCC
Q 035705 505 LLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASD 584 (758)
Q Consensus 505 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d 584 (758)
+|+++|+++... ..|.||||+|+..|+.+++++|+++|+++|.+|
T Consensus 147 ~Ll~~g~~~~~~-----------------------------------~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~ 191 (285)
T 3kea_A 147 YFLSEIPSTFDL-----------------------------------AILLSCIHITIKNGHVDMMILLLDYMTSTNTNN 191 (285)
T ss_dssp HHHTTSCTTCCC-----------------------------------STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTC
T ss_pred HHHhCCCccccc-----------------------------------cCCccHHHHHHHcChHHHHHHHHHcCCCCCccc
Confidence 555555443111 145566666666666666666666666666666
Q ss_pred CCCCcH-HHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCcccccc
Q 035705 585 ADGYTP-LMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHT 659 (758)
Q Consensus 585 ~~g~tp-L~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~d 659 (758)
..|+|| ||+|+..++.+++++|+++|+|++.+|. .|+..|+.+ ++++|+++|++++..+
T Consensus 192 ~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~---------iv~~Ll~~g~~~~~~~ 251 (285)
T 3kea_A 192 SLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDAE---------IAKMIIEKHVEYKSDS 251 (285)
T ss_dssp CCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTCHH---------HHHHHHHHHHHHTTCT
T ss_pred CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCCHH---------HHHHHHHcCCCCCCcc
Confidence 666665 6666666666666666666666665552 334455543 4445555555554433
No 31
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=4.8e-36 Score=298.16 Aligned_cols=232 Identities=19% Similarity=0.252 Sum_probs=188.6
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHh
Q 035705 346 YSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKS 425 (758)
Q Consensus 346 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~ 425 (758)
.+..+.|||+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+
T Consensus 5 ~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~------------ 72 (240)
T 3eu9_A 5 IDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLG------------ 72 (240)
T ss_dssp CSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCB------------
T ss_pred cccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhc------------
Confidence 56778888888888888888888888888888888888888888888888888888888887765432
Q ss_pred cccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHH
Q 035705 426 SRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRL 505 (758)
Q Consensus 426 ~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ 505 (758)
+..|.||||.|+..|+.+++++|++. |++++.++..|.||||+|+..|+.+++++
T Consensus 73 ------------------------~~~~~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ 127 (240)
T 3eu9_A 73 ------------------------GDLNSTPLHWATRQGHLSMVVQLMKY-GADPSLIDGEGCSCIHLAAQFGHTSIVAY 127 (240)
T ss_dssp ------------------------TTTTBCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred ------------------------CCcCCChhHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCHHHHHHH
Confidence 22345788888888888888888887 78888888889999999999999999999
Q ss_pred HHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCC-CCchHHHHHHHcCCHHHHHHHHhcCCCCCCCC
Q 035705 506 LLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGS-AGFYALHRAAKRGDFDLVHTLVSRCYDVNASD 584 (758)
Q Consensus 506 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d 584 (758)
|+++|++++..+..|.||||+|+..++...+..++.+.+.+++..+. .|.||||+|+..|+.+++++|+++|++++.+|
T Consensus 128 Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 207 (240)
T 3eu9_A 128 LIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQN 207 (240)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBC
T ss_pred HHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence 99999998888888888888888766633333455566677777765 78888888888888888888888888888888
Q ss_pred CCCCcHHHHHHHcCcHHHHHHHHhCCCCCC
Q 035705 585 ADGYTPLMLAAKSGHGSVCQLLISSGAKCD 614 (758)
Q Consensus 585 ~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~ 614 (758)
..|+||||+|+..|+.+++++|+++|++..
T Consensus 208 ~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~ 237 (240)
T 3eu9_A 208 IKGESALDLAKQRKNVWMINHLQEARQAKG 237 (240)
T ss_dssp TTSCBHHHHHHHTTCHHHHHHHHHHC----
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHHhhhccC
Confidence 888888888888888888888888887754
No 32
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-37 Score=312.51 Aligned_cols=234 Identities=21% Similarity=0.238 Sum_probs=127.7
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHHccCCCCC----CcccCCCCCCcHHHHHHHcCCH-HHHHHHHHcCCCCCCCCCCC
Q 035705 309 ILHNGRTLIHHAILCNNARAVELLLNCAVDKEF----PVQTYSKTELRPIHLAARLGSA-KILRRLISAGCNINSRTAAG 383 (758)
Q Consensus 309 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~----~~~~~~~~g~t~L~~A~~~g~~-~~v~~Ll~~g~~~~~~~~~g 383 (758)
.+..+.++|+.|+..|+.++|++|++.|++... .++..+..+.|||+.|+..+.. .++++|++.|+++|.+|.+|
T Consensus 7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G 86 (269)
T 4b93_B 7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDG 86 (269)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTS
T ss_pred cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCC
Confidence 455566777777777777777777777765321 1233455566666666665554 35666666666666666666
Q ss_pred CcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHc
Q 035705 384 ETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQA 463 (758)
Q Consensus 384 ~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~ 463 (758)
+||||+|+..|+.+++++|++.|++++..+..| .||++.|+..
T Consensus 87 ~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g-------------------------------------~t~l~~a~~~ 129 (269)
T 4b93_B 87 SSPLHVAALHGRADLIPLLLKHGANAGARNADQ-------------------------------------AVPLHLACQQ 129 (269)
T ss_dssp CCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTC-------------------------------------CCHHHHHHHH
T ss_pred CCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCC-------------------------------------CCcccccccc
Confidence 666666666666666666666655554433332 2444555555
Q ss_pred CCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhh
Q 035705 464 NDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEY 543 (758)
Q Consensus 464 ~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~ 543 (758)
++.+++++|++. |++++.+|..|.||||+|+..|+.++|++|+++|++++
T Consensus 130 ~~~~~~~~Ll~~-g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn----------------------------- 179 (269)
T 4b93_B 130 GHFQVVKCLLDS-NAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASIN----------------------------- 179 (269)
T ss_dssp TCHHHHHHHHHT-TCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTT-----------------------------
T ss_pred ChHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC-----------------------------
Confidence 555555555554 45555555555555555555555555555555555554
Q ss_pred ccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCc-HHHHHHHHhCCCCCC
Q 035705 544 ALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGH-GSVCQLLISSGAKCD 614 (758)
Q Consensus 544 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~-~~iv~~Ll~~gad~~ 614 (758)
..+..|+||||+|+..|+.++|++|+++|+|+|.+|..|+||||+|+++++ .++++.|.+.+++++
T Consensus 180 -----~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~~~ 246 (269)
T 4b93_B 180 -----ASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVASLD 246 (269)
T ss_dssp -----CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC---------
T ss_pred -----ccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhchhhh
Confidence 445566677888888889999999999999999999999999999988775 345555555555443
No 33
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=8.2e-37 Score=311.07 Aligned_cols=242 Identities=19% Similarity=0.175 Sum_probs=206.1
Q ss_pred hHHHHHHHhhccCCCCCCCCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 035705 294 SGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAG 373 (758)
Q Consensus 294 ~~~~~~~ll~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 373 (758)
..++.++|........+..|.||||+|+..|+.++|++|++.|++++. .+|.||||+|+..|+.+++++|+++|
T Consensus 12 ~~~v~~lL~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------~~g~t~L~~A~~~g~~~~v~~Ll~~g 85 (285)
T 3kea_A 12 SKQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL------LENEFPLHQAATLEDTKIVKILLFSG 85 (285)
T ss_dssp HHHHHHHHHSTTTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSC------CTTCCHHHHHTTSSSCHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC------CCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 446667776664444688999999999999999999999999999876 25899999999999999999999999
Q ss_pred CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCC
Q 035705 374 CNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASR 453 (758)
Q Consensus 374 ~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~ 453 (758)
++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.
T Consensus 86 a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~------------------------------------ 129 (285)
T 3kea_A 86 LDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGW------------------------------------ 129 (285)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGG------------------------------------
T ss_pred CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCC------------------------------------
Confidence 99999999999999999999999999999999988776655441
Q ss_pred CcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCh
Q 035705 454 FSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNG 533 (758)
Q Consensus 454 ~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 533 (758)
.||||+|+..|+.+++++|+++ +.++... ..|.||||+|+..|+.+++++|+++|++++.++..|+||
T Consensus 130 ~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~---------- 197 (285)
T 3kea_A 130 KTSFYHAVMLNDVSIVSYFLSE-IPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIP---------- 197 (285)
T ss_dssp GSHHHHHHHTTCHHHHHHHHTT-SCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCT----------
T ss_pred CCHHHHHHHcCCHHHHHHHHhC-CCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCCh----------
Confidence 4789999999999999999998 5655322 289999999999999999999999998887776655543
Q ss_pred hHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCC
Q 035705 534 EVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKC 613 (758)
Q Consensus 534 ~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~ 613 (758)
|||+|+..|+.+++++|+++|++++.+|. .|+..|+.+++++|+++|+++
T Consensus 198 -----------------------~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~~g~~~ 247 (285)
T 3kea_A 198 -----------------------DIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDAEIAKMIIEKHVEY 247 (285)
T ss_dssp -----------------------THHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHHHHHHHcCCCC
Confidence 27777778888999999999999998873 567789999999999999987
Q ss_pred CCCCCC
Q 035705 614 DIENAR 619 (758)
Q Consensus 614 ~~~d~~ 619 (758)
+..+..
T Consensus 248 ~~~~~~ 253 (285)
T 3kea_A 248 KSDSYT 253 (285)
T ss_dssp TTCTTT
T ss_pred CCcccc
Confidence 765443
No 34
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=9.8e-37 Score=314.06 Aligned_cols=260 Identities=20% Similarity=0.232 Sum_probs=224.3
Q ss_pred HHHHcCCHHHHHHHHHcCCCCCC---------CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhc
Q 035705 356 LAARLGSAKILRRLISAGCNINS---------RTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSS 426 (758)
Q Consensus 356 ~A~~~g~~~~v~~Ll~~g~~~~~---------~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~ 426 (758)
.++..++.+.++.++....++.. .+..|.|||+.|+..|+.+++++|+++|++++..+..|
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g---------- 73 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDG---------- 73 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTC----------
T ss_pred hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC----------
Confidence 46777888888888877555432 22356799999999999999999999998887665554
Q ss_pred ccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHH
Q 035705 427 RWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLL 506 (758)
Q Consensus 427 ~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L 506 (758)
.||||+|+..|+.+++++|++. |++++.++..|.||||+|+..|+.+++++|
T Consensus 74 ---------------------------~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~A~~~g~~~~v~~L 125 (299)
T 1s70_B 74 ---------------------------LTALHQACIDDNVDMVKFLVEN-GANINQPDNEGWIPLHAAASCGYLDIAEYL 125 (299)
T ss_dssp ---------------------------CBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred ---------------------------CCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Confidence 4788888999999999999998 899999999999999999999999999999
Q ss_pred HhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcC-CCCCCCCC
Q 035705 507 LHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRC-YDVNASDA 585 (758)
Q Consensus 507 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~n~~d~ 585 (758)
+++|++++..+..|.||||+|+..++.++++.++...+.+.+..+..+.++++. .++.++..+ ......+.
T Consensus 126 l~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~ 197 (299)
T 1s70_B 126 ISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLR--------DARQWLNSGHINDVRHAK 197 (299)
T ss_dssp HHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--------HHHHHHHHTCCCCCCCTT
T ss_pred HhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHH--------HHHHHHhccCcchhhhcC
Confidence 999999999999999999999999999999999998887766554444444443 344455554 55566788
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCccccccccCCCc
Q 035705 586 DGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTKCGKGS 665 (758)
Q Consensus 586 ~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~d~~g~t~ 665 (758)
.|.||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+..|+.+ ++++|+++|++++.+|..|+||
T Consensus 198 ~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~---------~v~~Ll~~gad~~~~d~~g~t~ 268 (299)
T 1s70_B 198 SGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEE---------ACRILVENLCDMEAVNKVGQTA 268 (299)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHH---------HHHHHHHTTCCTTCCCTTSCCT
T ss_pred CCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHH---------HHHHHHHcCCCCCCcCCCCCCH
Confidence 9999999999999999999999999999999999999999999999986 6678899999999999999999
Q ss_pred chHHH
Q 035705 666 PHVKL 670 (758)
Q Consensus 666 l~~a~ 670 (758)
+++|.
T Consensus 269 l~~A~ 273 (299)
T 1s70_B 269 FDVAD 273 (299)
T ss_dssp TTSCC
T ss_pred HHHHH
Confidence 99983
No 35
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=5.4e-38 Score=326.41 Aligned_cols=277 Identities=12% Similarity=0.048 Sum_probs=213.6
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcc
Q 035705 348 KTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSR 427 (758)
Q Consensus 348 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~ 427 (758)
....+|++ ....+++++|+++|++++..+..|.|+++ |+.+++++|+++|++++. +++++|....
T Consensus 21 ~~~~~~~~----~~~~dlv~~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~------~~~~~a~~~~ 85 (327)
T 1sw6_A 21 DRTAGPII----TFTHDLTSDFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEI------QEMPTSLNND 85 (327)
T ss_dssp ----CCEE----ECCTTCCCSTTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------
T ss_pred cccccchh----hhcCchHHHHhhCCcccccCCCCCCcccC-----chhHHHHHHHHhccCCcc------ccchHhhhcc
Confidence 34455555 46678899999999999999999999987 899999999999988643 3444443210
Q ss_pred cccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcc-cCCCCCcHHHHHHHcCCHHHHHHH
Q 035705 428 WTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDE-QDADGFSAAMIAAAAGHVEAFRLL 506 (758)
Q Consensus 428 ~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~L 506 (758)
. +..-........+.+|.++..+..++++.|++. |+++|. +|..|.||||+|+..|+.++|++|
T Consensus 86 ~--------------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~-g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~L 150 (327)
T 1sw6_A 86 S--------------SNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNT-QLNLNIPVDEHGNTPLHWLTSIANLELVKHL 150 (327)
T ss_dssp --------------------------------CHHHHHHHHHHHCTTS-CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHH
T ss_pred c--------------ccccccccCCccchhHHHHHhhHHHHHHHHHhc-CCCcccccCCCCCcHHHHHHHcCCHHHHHHH
Confidence 0 000000111122456888888888999999987 899999 899999999999999999999999
Q ss_pred HhCCCCCCcCCCCCCcHHHHHHHcCC---hhHHHHHHHhhccccCCCCCCCchHHHHHHH----cCCHHHHHHHHhc---
Q 035705 507 LHAGANIKLQNKYGETAITLAELNRN---GEVLEQVILEYALEEGQKGSAGFYALHRAAK----RGDFDLVHTLVSR--- 576 (758)
Q Consensus 507 l~~g~~~~~~~~~g~t~L~~A~~~~~---~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~----~g~~~~v~~Ll~~--- 576 (758)
+++|++++.+|..|+||||+|+..|+ .++++.|+.....+++..|..|+||||+|+. .|+.+++++|++.
T Consensus 151 l~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~ 230 (327)
T 1sw6_A 151 VKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMG 230 (327)
T ss_dssp HHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHH
Confidence 99999999999999999999999998 7888888888878899999999999999999 8999999999987
Q ss_pred -----------------CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHH
Q 035705 577 -----------------CYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENV 639 (758)
Q Consensus 577 -----------------ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~l 639 (758)
|++++.+|..|+||||+|+. +++|+++ +++.+|..|+||||+|++.|+.+
T Consensus 231 ~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~----- 297 (327)
T 1sw6_A 231 WIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNIS----- 297 (327)
T ss_dssp HHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHH-----
T ss_pred HHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHH-----
Confidence 89999999999999999985 9999998 68999999999999999999986
Q ss_pred HHHHHHHHHHhCCCccccccccCCCcchHHHH
Q 035705 640 ILDELALTLVLDGTYVKKHTKCGKGSPHVKLL 671 (758)
Q Consensus 640 l~~~~~~~L~~~g~~~~~~d~~g~t~l~~a~~ 671 (758)
++++|+++|++++.+|..|+||||+|+.
T Consensus 298 ----~v~~Ll~~Gad~~~~d~~G~TpL~~A~~ 325 (327)
T 1sw6_A 298 ----IVDALLDYGADPFIANKSGLRPVDFGAG 325 (327)
T ss_dssp ----HHHHHHHTTCCTTCCCTTSCCGGGGTCC
T ss_pred ----HHHHHHHcCCCCcccCCCCCCHHHHHHh
Confidence 6778899999999999999999999854
No 36
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=7.9e-36 Score=294.08 Aligned_cols=209 Identities=22% Similarity=0.187 Sum_probs=187.6
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCC--CCCCc-CCCCCCcHHHHHHH
Q 035705 453 RFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAG--ANIKL-QNKYGETAITLAEL 529 (758)
Q Consensus 453 ~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~-~~~~g~t~L~~A~~ 529 (758)
|.||||.|+..|+.+++++|++......+.++..|.||||+|+..|+.+++++|+++| .+++. .+..|.||||+|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 5689999999999999999999843334458899999999999999999999999999 55555 77899999999999
Q ss_pred cCChhHHHHHHHhh-ccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHh
Q 035705 530 NRNGEVLEQVILEY-ALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLIS 608 (758)
Q Consensus 530 ~~~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~ 608 (758)
.|+.+++++|+... ..+++..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++
T Consensus 82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 161 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG 161 (228)
T ss_dssp HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 99999999887664 37888889999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHH-hCCCccccccccCCCcchHHH
Q 035705 609 SG-AKCDIENARNETALALARENGNGNEAENVILDELALTLV-LDGTYVKKHTKCGKGSPHVKL 670 (758)
Q Consensus 609 ~g-ad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~-~~g~~~~~~d~~g~t~l~~a~ 670 (758)
+| ++++.+|..|+||||+|+..++.+ ++++|+ +.|++++.+|..|+||+++|+
T Consensus 162 ~g~~~~~~~d~~g~t~L~~A~~~~~~~---------~v~~Ll~~~ga~~~~~~~~g~t~l~~A~ 216 (228)
T 2dzn_A 162 LGKSAVNWQDKQGWTPLFHALAEGHGD---------AAVLLVEKYGAEYDLVDNKGAKAEDVAL 216 (228)
T ss_dssp TTCCCSCCCCTTSCCHHHHHHHTTCHH---------HHHHHHHHHCCCSCCBCTTSCBGGGGCS
T ss_pred cCcccccCcCCCCCCHHHHHHHcCCHH---------HHHHHHHhcCCCCCccCCCCCcHHHHHH
Confidence 99 999999999999999999999986 556777 789999999999999999973
No 37
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=7.8e-36 Score=294.12 Aligned_cols=212 Identities=23% Similarity=0.384 Sum_probs=150.3
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhccc
Q 035705 350 ELRPIHLAARLGSAKILRRLISAGCNINS-RTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRW 428 (758)
Q Consensus 350 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~ 428 (758)
|.||||.|+..|+.+++++|++.|.++.. .+..|.||||+|+..|+.+++++|+++|++++...
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~--------------- 66 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDD--------------- 66 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGG---------------
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccc---------------
Confidence 56777888777777888877777766543 67777888888888888888888887774433211
Q ss_pred ccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcC--CCCcccCCCCCcHHHHHHHcCCHHHHHHH
Q 035705 429 TLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWAD--VDLDEQDADGFSAAMIAAAAGHVEAFRLL 506 (758)
Q Consensus 429 ~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~--~~~~~~~~~g~t~L~~A~~~g~~~~v~~L 506 (758)
..+..|.||||+|+..|+.+++++|++. + .+++..+..|.||||+|+..|+.+++++|
T Consensus 67 -------------------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L 126 (228)
T 2dzn_A 67 -------------------YPDDSGWTPFHIACSVGNLEVVKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFL 126 (228)
T ss_dssp -------------------CCCTTSCCHHHHHHHHCCHHHHHHHHSS-SSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred -------------------cCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCcccccCCcCCCCHHHHHHHcCCHhHHHHH
Confidence 0233445566666666666666666665 4 66667777777777777777777777777
Q ss_pred HhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcC-CCCCCCCC
Q 035705 507 LHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRC-YDVNASDA 585 (758)
Q Consensus 507 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~n~~d~ 585 (758)
+++|++++.++.. |.||||+|+..|+.+++++|+++| ++++.+|.
T Consensus 127 l~~g~~~~~~~~~----------------------------------g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~ 172 (228)
T 2dzn_A 127 IENGASVRIKDKF----------------------------------NQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK 172 (228)
T ss_dssp HHTTCCSCCCCTT----------------------------------SCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCT
T ss_pred HHcCCCccccCCC----------------------------------CCCHHHHHHHcCCHHHHHHHHhcCcccccCcCC
Confidence 7777777665554 445566666666777777777777 77787888
Q ss_pred CCCcHHHHHHHcCcHHHHHHHH-hCCCCCCCCCCCCCcHHHHHHHC
Q 035705 586 DGYTPLMLAAKSGHGSVCQLLI-SSGAKCDIENARNETALALAREN 630 (758)
Q Consensus 586 ~g~tpL~~A~~~~~~~iv~~Ll-~~gad~~~~d~~g~t~L~~A~~~ 630 (758)
.|+||||+|+..|+.+++++|+ ++|+|++.+|..|+|||++|++.
T Consensus 173 ~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~ 218 (228)
T 2dzn_A 173 QGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE 218 (228)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH
Confidence 8888888888888888888888 77888888888888888887654
No 38
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=9.7e-36 Score=292.31 Aligned_cols=217 Identities=18% Similarity=0.231 Sum_probs=134.6
Q ss_pred CCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 035705 324 NNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLA 403 (758)
Q Consensus 324 g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll 403 (758)
|+.+++++|++.|++++.. .+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+
T Consensus 2 g~~~~i~~Ll~~g~~~~~~---~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 78 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLHNQ---TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 78 (223)
T ss_dssp ---CCEETTEETTCCTTCC---CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CcHHHHHHHHHcCCCcccc---cCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 4445555555555554431 2445555555555555555555555555555555555555555555555555555555
Q ss_pred HCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccc
Q 035705 404 SEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQ 483 (758)
Q Consensus 404 ~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~ 483 (758)
++++ .+++..
T Consensus 79 ~~~~----------------------------------------------------------------------~~~~~~ 88 (223)
T 2f8y_A 79 RNRA----------------------------------------------------------------------TDLDAR 88 (223)
T ss_dssp HBTT----------------------------------------------------------------------SCTTCC
T ss_pred HcCC----------------------------------------------------------------------CCcccC
Confidence 5443 244444
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHH
Q 035705 484 DADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563 (758)
Q Consensus 484 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~ 563 (758)
+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|+.. +.+++..+..|.||||+|+.
T Consensus 89 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~ 167 (223)
T 2f8y_A 89 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN-GANKDMQNNREETPLFLAAR 167 (223)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHH
T ss_pred CCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCcCHHHHHHH
Confidence 44455555555555555555555555555555555555555555555555554444433 44445555667777888888
Q ss_pred cCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCC
Q 035705 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCD 614 (758)
Q Consensus 564 ~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~ 614 (758)
.|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|+...
T Consensus 168 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~ 218 (223)
T 2f8y_A 168 EGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218 (223)
T ss_dssp HTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred cCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence 889999999999999999999999999999999999999999999998743
No 39
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=2.9e-35 Score=292.52 Aligned_cols=232 Identities=22% Similarity=0.207 Sum_probs=207.2
Q ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCc
Q 035705 376 INSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFS 455 (758)
Q Consensus 376 ~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t 455 (758)
++..|..|.|||+.|+..|+.+++++|++.|++++..+..| .|
T Consensus 2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g-------------------------------------~t 44 (240)
T 3eu9_A 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKEN-------------------------------------VT 44 (240)
T ss_dssp CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS-------------------------------------CC
T ss_pred ccccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCC-------------------------------------CC
Confidence 45678889999999999999999999999998877665544 46
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCCCcccC-CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChh
Q 035705 456 PLMFVTQANDVDALKKLIEWADVDLDEQD-ADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGE 534 (758)
Q Consensus 456 ~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 534 (758)
|||.|+..|+.+++++|++. +.+++..+ ..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+
T Consensus 45 ~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~ 123 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYISK-GAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTS 123 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHHT-TCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHhCCHHHHHHHHHc-CCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHH
Confidence 88888999999999999998 67777554 45999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCCCCCCchHHHHHHHcCC-HHHHHHHHhcCCCCCCCCC-CCCcHHHHHHHcCcHHHHHHHHhCCCC
Q 035705 535 VLEQVILEYALEEGQKGSAGFYALHRAAKRGD-FDLVHTLVSRCYDVNASDA-DGYTPLMLAAKSGHGSVCQLLISSGAK 612 (758)
Q Consensus 535 ~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~-~~~v~~Ll~~ga~~n~~d~-~g~tpL~~A~~~~~~~iv~~Ll~~gad 612 (758)
++++|+. .+.+++..+..|.||||+|+..++ .+++++|++.|++++..+. .|+||||+|+..|+.+++++|+++|++
T Consensus 124 ~~~~Ll~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 202 (240)
T 3eu9_A 124 IVAYLIA-KGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN 202 (240)
T ss_dssp HHHHHHH-TTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC
T ss_pred HHHHHHh-cCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 9997775 577888999999999999997765 8999999999999999997 999999999999999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCcc
Q 035705 613 CDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYV 655 (758)
Q Consensus 613 ~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~ 655 (758)
++.+|..|+|||++|++.++.++ +++|+++|++.
T Consensus 203 ~~~~~~~g~t~l~~A~~~~~~~~---------v~~L~~~~~~~ 236 (240)
T 3eu9_A 203 VDAQNIKGESALDLAKQRKNVWM---------INHLQEARQAK 236 (240)
T ss_dssp TTCBCTTSCBHHHHHHHTTCHHH---------HHHHHHHC---
T ss_pred CCCcCCCCCCHHHHHHHcCcHHH---------HHHHHHhhhcc
Confidence 99999999999999999999974 55666666654
No 40
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=2.6e-35 Score=289.28 Aligned_cols=213 Identities=22% Similarity=0.243 Sum_probs=195.0
Q ss_pred HHHHHHHHHcCCCcccC-CCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q 035705 433 QQAVVDSIRSGNIIQSS-NASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGA 511 (758)
Q Consensus 433 ~~~~~~ll~~g~~~~~~-~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~ 511 (758)
.+++++|++.|.+++.. +..|.||||+|+..|+.+++++|++. |++++..+..|.||||+|+..|+.+++++|++.+.
T Consensus 4 ~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~ 82 (223)
T 2f8y_A 4 PAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 82 (223)
T ss_dssp -CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTT
T ss_pred HHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 34455566666666554 67788999999999999999999998 89999999999999999999999999999999987
Q ss_pred -CCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcH
Q 035705 512 -NIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTP 590 (758)
Q Consensus 512 -~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tp 590 (758)
+++..+..|.||||+|+..|+.+++++|+. .+.+++..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||
T Consensus 83 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 161 (223)
T 2f8y_A 83 TDLDARMHDGTTPLILAARLAVEGMLEDLIN-SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 161 (223)
T ss_dssp SCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred CCcccCCCCCCcHHHHHHHhCcHHHHHHHHH-cCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCH
Confidence 899999999999999999999999997776 678889999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCccc
Q 035705 591 LMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVK 656 (758)
Q Consensus 591 L~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~ 656 (758)
||+|+..|+.+++++|+++|++++.+|..|+|||++|++.++.+ ++++|+++|+...
T Consensus 162 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~---------i~~~L~~~g~~~~ 218 (223)
T 2f8y_A 162 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHD---------IVRLLDEYNLVRS 218 (223)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH---------HHHHHHHTTCSSC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchH---------HHHHHHHcCCCcc
Confidence 99999999999999999999999999999999999999999996 5668888888644
No 41
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=2.1e-35 Score=292.47 Aligned_cols=213 Identities=19% Similarity=0.112 Sum_probs=192.7
Q ss_pred cCCCCCCcHHHHHHHcCCHHHHHHHHHhc---CCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHH
Q 035705 448 SSNASRFSPLMFVTQANDVDALKKLIEWA---DVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAI 524 (758)
Q Consensus 448 ~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~---~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L 524 (758)
..+.+|.||||+|+..|+.+++++|++.. +.+++.++..|.||||+|+..|+.+++++|+++|++++.++..|.|||
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 82 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL 82 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHH
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 45778999999999999999999999873 237999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChhHHHHHHHhhc-----cccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCC-CCCcHHHHHHHcC
Q 035705 525 TLAELNRNGEVLEQVILEYA-----LEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDA-DGYTPLMLAAKSG 598 (758)
Q Consensus 525 ~~A~~~~~~~~v~~ll~~~~-----~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~-~g~tpL~~A~~~~ 598 (758)
|+|+..|+.+++++|+.... ...+..+..|.||||+|+..|+.+++++|+++|++++.++. .|+||||+|+..|
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~ 162 (236)
T 1ikn_D 83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ 162 (236)
T ss_dssp HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcC
Confidence 99999999999998887653 33677888999999999999999999999999999999998 9999999999999
Q ss_pred cHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCccc--cccccCCCcchHH
Q 035705 599 HGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVK--KHTKCGKGSPHVK 669 (758)
Q Consensus 599 ~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~--~~d~~g~t~l~~a 669 (758)
+.+++++|+++|++++.+|..|+||||+|+..++.+ ++++|+++|++.. ..+..|.||.+.+
T Consensus 163 ~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~---------~~~~Ll~~ga~~~~~~~~~~~~~~~~~~ 226 (236)
T 1ikn_D 163 NPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTR---------IQQQLGQLTLENLQMLPESEDEESYDTE 226 (236)
T ss_dssp CHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHH---------HHHHHHTTSCGGGSSCCCCCTTTCCCCC
T ss_pred CHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchH---------HHHHHHHcchhhhhcCCccchHHHHhhh
Confidence 999999999999999999999999999999999986 6778999999877 8888999987653
No 42
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=1.2e-33 Score=272.46 Aligned_cols=193 Identities=23% Similarity=0.331 Sum_probs=184.0
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHc
Q 035705 451 ASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELN 530 (758)
Q Consensus 451 ~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 530 (758)
..+.||||.|+..|+.+.++.|+...+.+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 82 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ 82 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 45679999999999999999999997779999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcC-CCCCCCCCCCCcHHHHHHHcCc-----HHHHH
Q 035705 531 RNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRC-YDVNASDADGYTPLMLAAKSGH-----GSVCQ 604 (758)
Q Consensus 531 ~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~n~~d~~g~tpL~~A~~~~~-----~~iv~ 604 (758)
|+.+++++|+...+.+++..+..|.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..++ .++++
T Consensus 83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~ 162 (201)
T 3hra_A 83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162 (201)
T ss_dssp TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999 9999999999999999999988 99999
Q ss_pred HHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCC
Q 035705 605 LLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDG 652 (758)
Q Consensus 605 ~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g 652 (758)
+|+++|++++.+|..|+||||+|++.|+.+ ++++|+++|
T Consensus 163 ~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~---------~~~~Ll~~G 201 (201)
T 3hra_A 163 LLMENGADQSIKDNSGRTAMDYANQKGYTE---------ISKILAQYN 201 (201)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHHHTCHH---------HHHHHHTCC
T ss_pred HHHHCCCCCCccCCCCCCHHHHHHHcCCHh---------HHHHHHhcC
Confidence 999999999999999999999999999997 455666655
No 43
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=1.6e-33 Score=278.24 Aligned_cols=214 Identities=21% Similarity=0.200 Sum_probs=167.9
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHc-cCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-----CCCCCCCCc
Q 035705 312 NGRTLIHHAILCNNARAVELLLNC-AVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNI-----NSRTAAGET 385 (758)
Q Consensus 312 ~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-----~~~~~~g~t 385 (758)
.|.||||.|+..|+.+++++|++. |++++. .+..|.||||+|+..|+.+++++|+++|+++ +..|..|.|
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~----~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t 77 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQ----RGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQT 77 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTC----CCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCccc----CCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcC
Confidence 478999999999999999999987 888776 6888999999999999999999999998886 667778999
Q ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCC
Q 035705 386 AAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQAND 465 (758)
Q Consensus 386 ~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~ 465 (758)
|||+|+..|+.+++++|+++|++++..+.... +
T Consensus 78 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~---------------------------------------~-------- 110 (232)
T 2rfa_A 78 ALHIAVINQNVNLVRALLARGASVSARATGSV---------------------------------------F-------- 110 (232)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGG---------------------------------------G--------
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCcccCCcc---------------------------------------e--------
Confidence 99999999999999999999998876543211 0
Q ss_pred HHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhcc
Q 035705 466 VDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYAL 545 (758)
Q Consensus 466 ~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~ 545 (758)
....+..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++.
T Consensus 111 -----------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~-------- 171 (232)
T 2rfa_A 111 -----------HYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFAC-------- 171 (232)
T ss_dssp -----------SCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHH--------
T ss_pred -----------eecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHH--------
Confidence 1234556678888888888888888888888888888888777777766666666555542
Q ss_pred ccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCC------CCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCC
Q 035705 546 EEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDV------NASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIEN 617 (758)
Q Consensus 546 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~------n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d 617 (758)
+++++|+++|+++ +.+|..|+||||+|+..|+.+++++|+++|++...+.
T Consensus 172 ----------------------~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~~~~~ 227 (232)
T 2rfa_A 172 ----------------------QMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAH 227 (232)
T ss_dssp ----------------------HHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred ----------------------HHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccchhhh
Confidence 2347777777776 5778888888888888888888888888887765443
No 44
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=1.3e-33 Score=278.86 Aligned_cols=198 Identities=25% Similarity=0.295 Sum_probs=166.7
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-----CcCCCCCCcHHHH
Q 035705 452 SRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANI-----KLQNKYGETAITL 526 (758)
Q Consensus 452 ~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-----~~~~~~g~t~L~~ 526 (758)
.|.||||.|+..|+.+++++|++..+++++.+|..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~ 81 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI 81 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence 46788888888888888888888767888888888888888888888888888888888776 5667788888888
Q ss_pred HHHcCChhHHHHHHHhhccccCCCCC-------------CCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHH
Q 035705 527 AELNRNGEVLEQVILEYALEEGQKGS-------------AGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLML 593 (758)
Q Consensus 527 A~~~~~~~~v~~ll~~~~~~~~~~~~-------------~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~ 593 (758)
|+..|+.+++++|+.. +.+++..+. .|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+
T Consensus 82 A~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~ 160 (232)
T 2rfa_A 82 AVINQNVNLVRALLAR-GASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHI 160 (232)
T ss_dssp HHHTTCHHHHHHHHHT-TCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred HHHcCCHHHHHHHHhC-CCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence 8888888888876654 556665544 79999999999999999999999999999999999999999
Q ss_pred HHHcCcHHHH----HHHHhCCCCC------CCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCcccccc
Q 035705 594 AAKSGHGSVC----QLLISSGAKC------DIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHT 659 (758)
Q Consensus 594 A~~~~~~~iv----~~Ll~~gad~------~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~d 659 (758)
|+..++.+++ ++|+++|+++ +.+|..|+||||+|++.|+.+ ++++|+++|++.....
T Consensus 161 A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~---------~v~~Ll~~g~~~~~~~ 227 (232)
T 2rfa_A 161 LILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIV---------MFQHLMQKRKHIAAAH 227 (232)
T ss_dssp HHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHH---------HHHHHHHHHHHC----
T ss_pred HHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHH---------HHHHHHhcCccchhhh
Confidence 9999999988 9999999998 589999999999999999997 5556777776655443
No 45
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=8e-35 Score=288.35 Aligned_cols=224 Identities=21% Similarity=0.250 Sum_probs=162.2
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 035705 310 LHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMI 389 (758)
Q Consensus 310 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 389 (758)
+.+|.||||+|+..|+.+++++|++.+......++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+
T Consensus 5 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 84 (236)
T 1ikn_D 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHL 84 (236)
T ss_dssp --CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHH
T ss_pred CCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence 45667777777777777777777666553322233456667777777777777777777777777777777777777777
Q ss_pred HHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHH
Q 035705 390 CARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDAL 469 (758)
Q Consensus 390 A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v 469 (758)
|+..|+.+++++|+++|+++..
T Consensus 85 A~~~~~~~~v~~Ll~~~~~~~~---------------------------------------------------------- 106 (236)
T 1ikn_D 85 ACEQGCLASVGVLTQSCTTPHL---------------------------------------------------------- 106 (236)
T ss_dssp HHHHTCHHHHHHHHHSTTTTSS----------------------------------------------------------
T ss_pred HHHcCCHHHHHHHHhcccchhH----------------------------------------------------------
Confidence 7777777777777766654321
Q ss_pred HHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCC
Q 035705 470 KKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQ 549 (758)
Q Consensus 470 ~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~ 549 (758)
...++..+..|.||||+|+..|+.+++++|+++|++++.++.
T Consensus 107 -------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~------------------------------- 148 (236)
T 1ikn_D 107 -------HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEP------------------------------- 148 (236)
T ss_dssp -------SCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT-------------------------------
T ss_pred -------HHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-------------------------------
Confidence 122456677888888888888889999999888888876654
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCC--CCCCCCCcHHHHH
Q 035705 550 KGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCD--IENARNETALALA 627 (758)
Q Consensus 550 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~--~~d~~g~t~L~~A 627 (758)
..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|+++. .++..|.||.+.+
T Consensus 149 --~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~ 226 (236)
T 1ikn_D 149 --CNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTE 226 (236)
T ss_dssp --TTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC
T ss_pred --CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhh
Confidence 145566777778888899999999999999999999999999999999999999999999876 7888999988776
Q ss_pred HHCC
Q 035705 628 RENG 631 (758)
Q Consensus 628 ~~~~ 631 (758)
....
T Consensus 227 ~~~~ 230 (236)
T 1ikn_D 227 SEFT 230 (236)
T ss_dssp ----
T ss_pred cccc
Confidence 6543
No 46
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=1e-32 Score=255.36 Aligned_cols=158 Identities=35% Similarity=0.501 Sum_probs=108.1
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHH
Q 035705 490 AAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDL 569 (758)
Q Consensus 490 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~ 569 (758)
+|+.|++.|+.++|++|+++|+|++.+|..|+||||+|+..++.++++.|+ +.+.+++..|..|+||||+|+..|+.++
T Consensus 7 ~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll-~~gad~~~~d~~g~TpLh~A~~~g~~~~ 85 (169)
T 4gpm_A 7 RLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLI-SKGADVNAKDSDGRTPLHHAAENGHKEV 85 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH-hcccchhhhccCCCCHHHHHHHcCCHHH
Confidence 455555555555555555555555555555555555555555555555444 3345555566666777777777788888
Q ss_pred HHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHH
Q 035705 570 VHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLV 649 (758)
Q Consensus 570 v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~ 649 (758)
+++|+++|+++|.+|..|+||||+|+..|+.++|++|+++|+|++.+|..|+||||+|++.|+.+ ++++|+
T Consensus 86 v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~---------iv~~Ll 156 (169)
T 4gpm_A 86 VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEE---------VVKLLE 156 (169)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH---------HHHHHH
T ss_pred HHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHH---------HHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888775 566778
Q ss_pred hCCCcccc
Q 035705 650 LDGTYVKK 657 (758)
Q Consensus 650 ~~g~~~~~ 657 (758)
++||+++.
T Consensus 157 ~~GA~ie~ 164 (169)
T 4gpm_A 157 KQGGWLEH 164 (169)
T ss_dssp TC------
T ss_pred HCCCCcCC
Confidence 88887764
No 47
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=5.3e-32 Score=250.50 Aligned_cols=159 Identities=34% Similarity=0.474 Sum_probs=148.6
Q ss_pred cHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChh
Q 035705 455 SPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGE 534 (758)
Q Consensus 455 t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 534 (758)
++|+.|++.|+.++|+.|++. |+++|.+|..|.||||+|+..++.+++++|+++|++++.+|..|+||||+|+..|+.+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~-Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~ 84 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIEN-GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE 84 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHH
Confidence 479999999999999999998 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCC
Q 035705 535 VLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCD 614 (758)
Q Consensus 535 ~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~ 614 (758)
++++|+ +.+.+++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++||+++
T Consensus 85 ~v~~Ll-~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie 163 (169)
T 4gpm_A 85 VVKLLI-SKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163 (169)
T ss_dssp HHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-----
T ss_pred HHHHHH-HCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence 999776 5678999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q 035705 615 I 615 (758)
Q Consensus 615 ~ 615 (758)
.
T Consensus 164 ~ 164 (169)
T 4gpm_A 164 H 164 (169)
T ss_dssp -
T ss_pred C
Confidence 4
No 48
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=3.1e-33 Score=283.55 Aligned_cols=214 Identities=19% Similarity=0.206 Sum_probs=156.0
Q ss_pred CCcccCCCCCCcHHHHHHHcCCHHHHHHHHHh---cCCCCc----ccCCCCCcHHHHHHHc---CCHHHHHHHHhCCCCC
Q 035705 444 NIIQSSNASRFSPLMFVTQANDVDALKKLIEW---ADVDLD----EQDADGFSAAMIAAAA---GHVEAFRLLLHAGANI 513 (758)
Q Consensus 444 ~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~---~~~~~~----~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~ 513 (758)
+..+..+..|.||||.|+..|+.++++.|++. .+.+++ ..+..|.||||+|+.. |+.+++++|+++|+++
T Consensus 4 a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~ 83 (273)
T 2pnn_A 4 AGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKT 83 (273)
T ss_dssp -------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHT
T ss_pred ccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccc
Confidence 33455666777777777777777777777763 345554 3466777777777765 7777777777776542
Q ss_pred -------Cc----CCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCC--------------CCchHHHHHHHcCCHH
Q 035705 514 -------KL----QNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGS--------------AGFYALHRAAKRGDFD 568 (758)
Q Consensus 514 -------~~----~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~--------------~g~t~L~~A~~~g~~~ 568 (758)
+. .|..|.||||+|+..|+.+++++|+.. +.+++..+. .|.||||+|+..|+.+
T Consensus 84 ~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~ 162 (273)
T 2pnn_A 84 DSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN-GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA 162 (273)
T ss_dssp TCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHH
T ss_pred cchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcCccccccccccccccccccCCCCHHHHHHHcCCHH
Confidence 21 455677777777777777777766654 666666665 7999999999999999
Q ss_pred HHHHHHh---cCCCCCCCCCCCCcHHHHHHHcCc---------HHHHHHHHhCCCCCC-------CCCCCCCcHHHHHHH
Q 035705 569 LVHTLVS---RCYDVNASDADGYTPLMLAAKSGH---------GSVCQLLISSGAKCD-------IENARNETALALARE 629 (758)
Q Consensus 569 ~v~~Ll~---~ga~~n~~d~~g~tpL~~A~~~~~---------~~iv~~Ll~~gad~~-------~~d~~g~t~L~~A~~ 629 (758)
++++|++ +|+++|.+|..|+||||+|+..++ .+++++|+++|++++ .+|..|+||||+|++
T Consensus 163 ~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~ 242 (273)
T 2pnn_A 163 IVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAAS 242 (273)
T ss_dssp HHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred HHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHH
Confidence 9999999 999999999999999999999988 899999999999997 489999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHhCCC-ccccccccCCCcch
Q 035705 630 NGNGNEAENVILDELALTLVLDGT-YVKKHTKCGKGSPH 667 (758)
Q Consensus 630 ~~~~~~~~~ll~~~~~~~L~~~g~-~~~~~d~~g~t~l~ 667 (758)
.|+.+ ++++|+++|+ |+......+++|-+
T Consensus 243 ~g~~~---------iv~~Ll~~ga~dp~~~~~~~~~~~~ 272 (273)
T 2pnn_A 243 SGKIG---------VLAYILQREIHEPECRHAAAHHHHH 272 (273)
T ss_dssp TTCHH---------HHHHHHHHHTC--------------
T ss_pred hChHH---------HHHHHHHCCCCCchhhhhhhhhccC
Confidence 99986 6668889999 88888888877643
No 49
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=7.8e-33 Score=280.58 Aligned_cols=220 Identities=15% Similarity=0.173 Sum_probs=160.5
Q ss_pred cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHC----CCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcc
Q 035705 372 AGCNINSRTAAGETAAMICARYKHEECLKFLASE----GADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQ 447 (758)
Q Consensus 372 ~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~----g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~ 447 (758)
.++..+..|..|.||||.|+..|+.++|+.|++. +++++..+ .
T Consensus 2 ~~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~---------------------------------~ 48 (273)
T 2pnn_A 2 VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSE---------------------------------F 48 (273)
T ss_dssp ---------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGG---------------------------------G
T ss_pred CcccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcc---------------------------------c
Confidence 3556677888899999999999999988888764 44443110 0
Q ss_pred cCCCCCCcHHHHHHHc---CCHHHHHHHHHhcCCC-----------CcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q 035705 448 SSNASRFSPLMFVTQA---NDVDALKKLIEWADVD-----------LDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANI 513 (758)
Q Consensus 448 ~~~~~~~t~L~~a~~~---~~~~~v~~Ll~~~~~~-----------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~ 513 (758)
..+..|.||||+|+.. |+.+++++|++. |++ +...|..|.||||+|+..|+.+++++|+++|+++
T Consensus 49 ~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~-ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~ 127 (273)
T 2pnn_A 49 KDPETGKTCLLKAMLNLHNGQNDTIALLLDV-ARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV 127 (273)
T ss_dssp SCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH-HHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred ccCcCCCCHHHHHHHHHhcCChHHHHHHHHh-hccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence 2244556677777765 777777777776 332 2235668888999888888888888888888888
Q ss_pred CcCCC--------------CCCcHHHHHHHcCChhHHHHHHHh--hccccCCCCCCCchHHHHHHHcCC---------HH
Q 035705 514 KLQNK--------------YGETAITLAELNRNGEVLEQVILE--YALEEGQKGSAGFYALHRAAKRGD---------FD 568 (758)
Q Consensus 514 ~~~~~--------------~g~t~L~~A~~~~~~~~v~~ll~~--~~~~~~~~~~~g~t~L~~A~~~g~---------~~ 568 (758)
+..+. .|.||||+|+..|+.+++++|+.. .+.+++..|..|+||||+|+..|+ .+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~ 207 (273)
T 2pnn_A 128 QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTS 207 (273)
T ss_dssp TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHH
T ss_pred CccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHH
Confidence 88876 788999999999999998887775 788888888899999999998887 89
Q ss_pred HHHHHHhcCCCCC-------CCCCCCCcHHHHHHHcCcHHHHHHHHhCCC-CCCCCCCCCCcHHH
Q 035705 569 LVHTLVSRCYDVN-------ASDADGYTPLMLAAKSGHGSVCQLLISSGA-KCDIENARNETALA 625 (758)
Q Consensus 569 ~v~~Ll~~ga~~n-------~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga-d~~~~d~~g~t~L~ 625 (758)
++++|+++|+++| .+|..|+||||+|+..|+.+++++|+++|| |+......+.+|-+
T Consensus 208 ~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~~ 272 (273)
T 2pnn_A 208 MYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHHH 272 (273)
T ss_dssp HHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhccC
Confidence 9999999999997 489999999999999999999999999999 88888877777643
No 50
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=2.1e-31 Score=256.76 Aligned_cols=197 Identities=25% Similarity=0.353 Sum_probs=153.4
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhc
Q 035705 348 KTELRPIHLAARLGSAKILRRLISAGC-NINSRTAAGETAAMICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSS 426 (758)
Q Consensus 348 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~ 426 (758)
..+.||||.|+..|+.+.++.|++.+. +++..+..|.||||+|+..|+.+++++|+++|++++..+..|
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g---------- 72 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSIS---------- 72 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS----------
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC----------
Confidence 467788888888888888888888755 888888888888888888888888888888877776554443
Q ss_pred ccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHH
Q 035705 427 RWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLL 506 (758)
Q Consensus 427 ~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L 506 (758)
.||||+|+..|+.+++++|++..+.+++..+..|.||||+|+..|+.+++++|
T Consensus 73 ---------------------------~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 125 (201)
T 3hra_A 73 ---------------------------DSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLL 125 (201)
T ss_dssp ---------------------------CCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHH
T ss_pred ---------------------------CCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHH
Confidence 35677777788888888888666777777777777777777777777777777
Q ss_pred HhCC-CCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCC
Q 035705 507 LHAG-ANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDA 585 (758)
Q Consensus 507 l~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~ 585 (758)
+++| ++++.++..|.||||+|+..++.. .++.+++++|+++|++++.+|.
T Consensus 126 l~~g~~~~~~~~~~g~t~L~~A~~~~~~~-----------------------------~~~~~~v~~Ll~~ga~~~~~~~ 176 (201)
T 3hra_A 126 LEDGREDIDFQNDFGYTALIEAVGLREGN-----------------------------QLYQDIVKLLMENGADQSIKDN 176 (201)
T ss_dssp HHHCCCCTTCCCTTSCCHHHHHHHSSCCS-----------------------------HHHHHHHHHHHHTTCCTTCCCT
T ss_pred HHcCCCCcCCCCCCCCCHHHHHHHhccch-----------------------------hhHHHHHHHHHHCCCCCCccCC
Confidence 7777 666666665555555554433210 0128999999999999999999
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHhCC
Q 035705 586 DGYTPLMLAAKSGHGSVCQLLISSG 610 (758)
Q Consensus 586 ~g~tpL~~A~~~~~~~iv~~Ll~~g 610 (758)
.|+||||+|+..|+.+++++|+++|
T Consensus 177 ~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 177 SGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred CCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 9999999999999999999999987
No 51
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.98 E-value=6.8e-33 Score=278.16 Aligned_cols=213 Identities=21% Similarity=0.214 Sum_probs=156.1
Q ss_pred CCcHHHHHHHcCCHH----HHHHHHHcCCCCCC----CCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCcccCCCC
Q 035705 350 ELRPIHLAARLGSAK----ILRRLISAGCNINS----RTAAGETAAMICARY---KHEECLKFLASEGADLGLINYAGQC 418 (758)
Q Consensus 350 g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~----~~~~g~t~L~~A~~~---g~~~iv~~Ll~~g~~~~~~~~~g~t 418 (758)
|.||||.|+..|+.+ ++++|+++|++++. .|..|.||||+|+.. |+.+++++|++.|++++..+..
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~--- 78 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL--- 78 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCG---
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhh---
Confidence 678999999999986 66777778999988 788999999999998 9999999999888776532200
Q ss_pred HHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcC
Q 035705 419 ANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAG 498 (758)
Q Consensus 419 ~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g 498 (758)
+ .......|..|.||||+|+..|
T Consensus 79 ------------------------------------------------------~---~~~~~~~d~~g~t~L~~A~~~g 101 (256)
T 2etb_A 79 ------------------------------------------------------V---NAQCTDEFYQGHSALHIAIEKR 101 (256)
T ss_dssp ------------------------------------------------------G---GCCCCSTTTTTCCHHHHHHHTT
T ss_pred ------------------------------------------------------c---ccccccccccCCCHHHHHHHcC
Confidence 0 1122334556777777777777
Q ss_pred CHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHh---
Q 035705 499 HVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVS--- 575 (758)
Q Consensus 499 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~--- 575 (758)
+.+++++|+++|++++..+..+.+ ..+.+..+..|.||||+|+..|+.+++++|++
T Consensus 102 ~~~~v~~Ll~~ga~~~~~~~~~~~---------------------~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~ 160 (256)
T 2etb_A 102 SLQCVKLLVENGADVHLRACGRFF---------------------QKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH 160 (256)
T ss_dssp CHHHHHHHHHTTCCTTCCCCSGGG---------------------SCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred CHHHHHHHHHcCCCCCcccccccc---------------------cccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence 777777777777777776654331 12233344557777777777777777777777
Q ss_pred cCCCCCCCCCCCCcHHHHHHH--cCcHH-------HHHHHHhCCCCC-------CCCCCCCCcHHHHHHHCCChhhHHHH
Q 035705 576 RCYDVNASDADGYTPLMLAAK--SGHGS-------VCQLLISSGAKC-------DIENARNETALALARENGNGNEAENV 639 (758)
Q Consensus 576 ~ga~~n~~d~~g~tpL~~A~~--~~~~~-------iv~~Ll~~gad~-------~~~d~~g~t~L~~A~~~~~~~~~~~l 639 (758)
+|+++|.+|..|+||||+|+. .++.+ ++++|+++|+++ +.+|..|+||||+|+..|+.++++.|
T Consensus 161 ~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~L 240 (256)
T 2etb_A 161 QPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI 240 (256)
T ss_dssp CCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred cCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHH
Confidence 777777777777777777777 66666 777777777777 77777777888887777777777777
Q ss_pred HHHH
Q 035705 640 ILDE 643 (758)
Q Consensus 640 l~~~ 643 (758)
+...
T Consensus 241 l~~g 244 (256)
T 2etb_A 241 LQRE 244 (256)
T ss_dssp HHHH
T ss_pred HhCC
Confidence 7553
No 52
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.98 E-value=1.1e-32 Score=276.71 Aligned_cols=113 Identities=23% Similarity=0.222 Sum_probs=100.2
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCC-------------CCcHHHHHHHcCcHHHHHHHHh---CCCCC
Q 035705 550 KGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDAD-------------GYTPLMLAAKSGHGSVCQLLIS---SGAKC 613 (758)
Q Consensus 550 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~-------------g~tpL~~A~~~~~~~iv~~Ll~---~gad~ 613 (758)
.|..|.||||+|+..|+.+++++|+++|++++.+|.. |+||||+|+..|+.+++++|++ +|+|+
T Consensus 86 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~ 165 (256)
T 2etb_A 86 EFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASL 165 (256)
T ss_dssp TTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT
T ss_pred ccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCc
Confidence 4567999999999999999999999999999999986 9999999999999999999999 99999
Q ss_pred CCCCCCCCcHHHHHHH--CCChhhHHHHHHHHHHHHHHhCCCcc-------ccccccCCC
Q 035705 614 DIENARNETALALARE--NGNGNEAENVILDELALTLVLDGTYV-------KKHTKCGKG 664 (758)
Q Consensus 614 ~~~d~~g~t~L~~A~~--~~~~~~~~~ll~~~~~~~L~~~g~~~-------~~~d~~g~t 664 (758)
+.+|..|+||||+|+. .++.+..+.+. . ++++|+++|+++ +.+|..|+|
T Consensus 166 n~~d~~g~TpLh~A~~~~~~~~~~~~~~~-~-iv~~Ll~~ga~~~~~~~~~~~~d~~g~t 223 (256)
T 2etb_A 166 EATDSLGNTVLHALVMIADNSPENSALVI-H-MYDGLLQMGARLCPTVQLEEISNHQGLT 223 (256)
T ss_dssp TCCCTTSCCHHHHHHHHCCSCHHHHHHHH-H-HHHHHHHHHHHHSTTCCGGGCCCTTSCC
T ss_pred CccCCCCCCHHHHHHHcccCCchhhHHHH-H-HHHHHHHcCCCcccccccccccCCCCCC
Confidence 9999999999999999 77776222211 1 456888899999 999999998
No 53
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=1.2e-31 Score=269.74 Aligned_cols=215 Identities=19% Similarity=0.165 Sum_probs=133.6
Q ss_pred CCCCcHHHHHHHcCCHHH----HHHHHHcCCCCCCCC----CCCCcHHHHHH---HcCCHHHHHHHHHCCCCCCCcccCC
Q 035705 348 KTELRPIHLAARLGSAKI----LRRLISAGCNINSRT----AAGETAAMICA---RYKHEECLKFLASEGADLGLINYAG 416 (758)
Q Consensus 348 ~~g~t~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~----~~g~t~L~~A~---~~g~~~iv~~Ll~~g~~~~~~~~~g 416 (758)
..++|+||.|++.|+.+. +++|++.|++++..+ ..|.||||+|+ ..|+.+++++|++.|+++....
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~--- 79 (260)
T 3jxi_A 3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR--- 79 (260)
T ss_dssp CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHH---
T ss_pred cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchH---
Confidence 457788888888888884 444444788887655 66888888888 6688888888888776543210
Q ss_pred CCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHH
Q 035705 417 QCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAA 496 (758)
Q Consensus 417 ~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~ 496 (758)
.++ ..+++..|..|.||||+|+.
T Consensus 80 ------------------------------------------------------~~~---~~~~~~~d~~g~t~L~~A~~ 102 (260)
T 3jxi_A 80 ------------------------------------------------------EFI---NSPFRDVYYRGQTALHIAIE 102 (260)
T ss_dssp ------------------------------------------------------HHH---TCCBCCSSEESBCHHHHHHH
T ss_pred ------------------------------------------------------hhh---cccccccccCCCCHHHHHHH
Confidence 000 23445555566677777777
Q ss_pred cCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHh-
Q 035705 497 AGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVS- 575 (758)
Q Consensus 497 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~- 575 (758)
.|+.++|++|+++|++++..+..+.. ...+.+..+..|.||||+|+..|+.+++++|++
T Consensus 103 ~g~~~~v~~Ll~~ga~~~~~~~~~~~--------------------~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~ 162 (260)
T 3jxi_A 103 RRCKHYVELLVEKGADVHAQARGRFF--------------------QPKDEGGYFYFGELPLSLAACTNQPHIVHYLTEN 162 (260)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCEECCC--------------------SSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred cCCHHHHHHHHhCCCCcCcccccccc--------------------CcccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 77777777777777776666532100 011222333456666666666666666666666
Q ss_pred --cCCCCCCCCCCCCcHHHHHHHcCc---------HHHHHHHHhCCCCC-------CCCCCCCCcHHHHHHHCCChhhHH
Q 035705 576 --RCYDVNASDADGYTPLMLAAKSGH---------GSVCQLLISSGAKC-------DIENARNETALALARENGNGNEAE 637 (758)
Q Consensus 576 --~ga~~n~~d~~g~tpL~~A~~~~~---------~~iv~~Ll~~gad~-------~~~d~~g~t~L~~A~~~~~~~~~~ 637 (758)
+|+++|.+|..|+||||+|+..++ .+++++|+++|+++ +.+|..|+||||+|++.|+.++++
T Consensus 163 ~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~ 242 (260)
T 3jxi_A 163 GHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQ 242 (260)
T ss_dssp SSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred cccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHH
Confidence 566666666666666666665555 46666666666665 456666666666666666666666
Q ss_pred HHHHH
Q 035705 638 NVILD 642 (758)
Q Consensus 638 ~ll~~ 642 (758)
.|+..
T Consensus 243 ~Ll~~ 247 (260)
T 3jxi_A 243 HIIRR 247 (260)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66543
No 54
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.97 E-value=6.5e-34 Score=297.59 Aligned_cols=304 Identities=15% Similarity=0.136 Sum_probs=210.2
Q ss_pred cCCHHHHHHHHhCCCCCCcchhhhhhccccccccCCCCchhHHHHh-cCCHHHHHHHHHcCCCCccccccCccccccccc
Q 035705 190 RGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVV-SRQISVVRLLLQAGVKMDIKVRMGAWSWDMDTG 268 (758)
Q Consensus 190 ~g~~~iv~~Ll~~g~d~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~-~g~~~iv~~Ll~~ga~~~~~~~~g~~~~~~~~~ 268 (758)
.+..+.+..+++...+++... +.+++++|.. .++.+++++|+++|++
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~---------------~ll~~~~a~~~~~~~~~~~~l~~~g~~----------------- 91 (376)
T 2aja_A 44 LSYKEAIHIFLPGTKNMEQVR---------------QLLCLYYAHYNRNAKQLWSDAHKKGIK----------------- 91 (376)
T ss_dssp SCHHHHHHHCCCCSSHHHHHH---------------HHHHHHHHHTTTTCTTHHHHHHHHTCC-----------------
T ss_pred ccHHHHHHHHhcCCCCHHHHH---------------HHHHHHHHHhcCCCHHHHHHHHHcCCC-----------------
Confidence 555677777776665554433 4567887776 5788899999888753
Q ss_pred hhhhhhccccccccccchhhhhhhchHHHHHHHhhccCCCCCCCCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCC
Q 035705 269 EELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSK 348 (758)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~ 348 (758)
+.||||+|+..|+.++|++|++.|+.... ....+.
T Consensus 92 --------------------------------------------~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~-~~~~~~ 126 (376)
T 2aja_A 92 --------------------------------------------SEVICFVAAITGCSSALDTLCLLLTSDEI-VKVIQA 126 (376)
T ss_dssp --------------------------------------------HHHHHHHHHHHCCHHHHHHHTTC--CCSS-CC--CH
T ss_pred --------------------------------------------cCCHHHHHHHcCCHHHHHHHHHcCCcHHH-HHHhcc
Confidence 34899999999999999999999873221 112345
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC--cccCCCCHHHHH
Q 035705 349 TELRPIHLAARLGSAKILRRLISAGCNI---NSRTAAGETAAMICARYKHEECLKFLASEGADLGL--INYAGQCANSIA 423 (758)
Q Consensus 349 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~--~~~~g~t~l~~a 423 (758)
.|.||||+|+..|+.++|++|+++|+++ +..+.+ .||||+|+..|+.++|++|+++|++++. .+..
T Consensus 127 ~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~-------- 197 (376)
T 2aja_A 127 ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAE-------- 197 (376)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHH--------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCC--------
Confidence 6788999999999999999999999763 222233 8999999999999999999999988654 4333
Q ss_pred HhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHH-HcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHH
Q 035705 424 KSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVT-QANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEA 502 (758)
Q Consensus 424 ~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~-~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~ 502 (758)
|.||||+|+ ..|+.+++++|++. |. .|.||||+|+..|+.++
T Consensus 198 -----------------------------g~TpL~~Aa~~~G~~eiv~~Ll~~-ga-------~~~taL~~Aa~~g~~ev 240 (376)
T 2aja_A 198 -----------------------------NYYAFRWAAVGRGHHNVINFLLDC-PV-------MLAYAEIHEFEYGEKYV 240 (376)
T ss_dssp -----------------------------HHHHHHHHHSTTCCHHHHHHHTTS-HH-------HHHHHHHCTTTTTTTTH
T ss_pred -----------------------------CCCHHHHHHHHCCCHHHHHHHHhC-CC-------ccchHHHHHHHCCCHHH
Confidence 347888899 99999999999985 42 37899999999999999
Q ss_pred HHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHH---HHHcCCHHHHHHHHhc---
Q 035705 503 FRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHR---AAKRGDFDLVHTLVSR--- 576 (758)
Q Consensus 503 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~---A~~~g~~~~v~~Ll~~--- 576 (758)
+++|+++|++++..+ ++++.|+..|+.+++...-... +...+.. +...+..+.+++|++.
T Consensus 241 v~lL~~~ga~~~~~~----~~l~~A~~~g~~~vv~~~~~~~----------~~~~~~~li~~~~~~~~~~~~~Ll~~~~v 306 (376)
T 2aja_A 241 NPFIARHVNRLKEMH----DAFKLSNPDGVFDLVTKSECLQ----------GFYMLRNLIRRNDEVLLDDIRFLLSIPGI 306 (376)
T ss_dssp HHHHHHHHHHHHHHH----TTTTTTSSSSCCCCSSHHHHHH----------HHHHHHHHHHHCCGGGHHHHHHHHTSTTT
T ss_pred HHHHHhcCccccccc----HHHHHHHHCCChhhhcHHhhhh----------hHHHHHHHHHcchhhHHHHHHHHHhChhh
Confidence 999999998887654 3677888888887543110000 0000111 1112346777777763
Q ss_pred ------CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHH
Q 035705 577 ------CYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAE 637 (758)
Q Consensus 577 ------ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~ 637 (758)
|+++| .+.||||+|+..|+.+++++|++.| ..++..|+|++.+|-..|..++.+
T Consensus 307 k~l~~~g~~~n----~~~~~L~~A~~~g~~e~v~lLl~~~---~v~~~~~~~~~~~~~~~~~~~~~~ 366 (376)
T 2aja_A 307 KALAPTATIPG----DANELLRLALRLGNQGACALLLSIP---SVLALTKANNYYINETGGRLDLRA 366 (376)
T ss_dssp GGGSSCCSSTT----CCCHHHHHHHHHTCTTHHHHHTTSH---HHHHSCC-----------------
T ss_pred hhhhccCCCCC----CccHHHHHHHHcCcHHHHHHHHcCh---HHHHHHHHhccccccccccccHHH
Confidence 44443 5679999999999999999999975 667889999999999999998655
No 55
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=5.8e-31 Score=264.79 Aligned_cols=88 Identities=26% Similarity=0.189 Sum_probs=82.1
Q ss_pred cccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCC--------------CCCCcHHHHHHHcCcHHHHHHHHh--
Q 035705 545 LEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASD--------------ADGYTPLMLAAKSGHGSVCQLLIS-- 608 (758)
Q Consensus 545 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d--------------~~g~tpL~~A~~~~~~~iv~~Ll~-- 608 (758)
...+..|..|+||||+|+..|+.++|++|+++|++++.++ ..|+||||+|+..|+.+++++|++
T Consensus 84 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~ 163 (260)
T 3jxi_A 84 SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENG 163 (260)
T ss_dssp CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 3445556799999999999999999999999999999999 689999999999999999999999
Q ss_pred -CCCCCCCCCCCCCcHHHHHHHCCC
Q 035705 609 -SGAKCDIENARNETALALARENGN 632 (758)
Q Consensus 609 -~gad~~~~d~~g~t~L~~A~~~~~ 632 (758)
+|++++.+|..|+||||+|+..++
T Consensus 164 ~~ga~~~~~d~~g~TpLh~A~~~~~ 188 (260)
T 3jxi_A 164 HKQADLRRQDSRGNTVLHALVAIAD 188 (260)
T ss_dssp SCCCCTTCCCTTSCCHHHHHHHHCC
T ss_pred ccCCCCcccCCCCCcHHHHHHHhcc
Confidence 999999999999999999998777
No 56
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=4.1e-30 Score=260.04 Aligned_cols=185 Identities=24% Similarity=0.300 Sum_probs=169.5
Q ss_pred CcHHHHHHHcCCHHHHHHHHHhcCCC--CcccCCCCCcHHHHHHHcCCHHHHHHHHhCCC-CCCcCCCCCCcHHHHHH--
Q 035705 454 FSPLMFVTQANDVDALKKLIEWADVD--LDEQDADGFSAAMIAAAAGHVEAFRLLLHAGA-NIKLQNKYGETAITLAE-- 528 (758)
Q Consensus 454 ~t~L~~a~~~~~~~~v~~Ll~~~~~~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~-- 528 (758)
.+++|.|+..++.+.++.+++. +.+ +|.+|..|.||||+|+..|+.+++++|++.|+ +++..+..|.||||+|+
T Consensus 77 ~~~l~~a~~~~~~~~~~~l~~~-~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~ 155 (276)
T 4hbd_A 77 RSDAHPELVRRHLVTFRAMSAR-LLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA 155 (276)
T ss_dssp STTCCHHHHHHHHHHHHHHCHH-HHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred ccCCCHHHHHHHHHHHHHHHHH-HHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence 3688999999999999999876 344 88999999999999999999999999999998 99999999999999999
Q ss_pred ---HcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHH
Q 035705 529 ---LNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQL 605 (758)
Q Consensus 529 ---~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~ 605 (758)
..++.++++.|+.. +...+..+..|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++
T Consensus 156 ~~~~~~~~~~v~~Ll~~-g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~ 234 (276)
T 4hbd_A 156 TLKTQDDIETVLQLFRL-GNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGL 234 (276)
T ss_dssp CCCSHHHHHHHHHHHHH-SCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HhhhhhhHHHHHHHHHc-CCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHH
Confidence 66888899877654 56777788899999999999999999999999999999999999999999999999999999
Q ss_pred HHh-CCCCCCCCCCCCCcHHHHHHHCCChhhHHHHH
Q 035705 606 LIS-SGAKCDIENARNETALALARENGNGNEAENVI 640 (758)
Q Consensus 606 Ll~-~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll 640 (758)
|++ .|+|++.+|..|+||||+|+..|+.++++.|+
T Consensus 235 Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll 270 (276)
T 4hbd_A 235 LLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLY 270 (276)
T ss_dssp HHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 999 89999999999999999999999998666544
No 57
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=2.7e-29 Score=235.15 Aligned_cols=169 Identities=24% Similarity=0.292 Sum_probs=111.6
Q ss_pred CcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCh
Q 035705 454 FSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNG 533 (758)
Q Consensus 454 ~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 533 (758)
.||||.|+..|+.+++++|++..+..++.++..|.||||+|+..|+.+++++|+++|++++..
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----------------- 65 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL----------------- 65 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCC-----------------
T ss_pred hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhh-----------------
Confidence 355555555555555555555532235555555555555555555555555555555555544
Q ss_pred hHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCC
Q 035705 534 EVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKC 613 (758)
Q Consensus 534 ~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~ 613 (758)
+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|+++
T Consensus 66 -----------------~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~ 128 (172)
T 3v30_A 66 -----------------AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADL 128 (172)
T ss_dssp -----------------CTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred -----------------cccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence 445566677777777777778888888888888888888888888888888888888888888
Q ss_pred CCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCccccccccCCCc
Q 035705 614 DIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTKCGKGS 665 (758)
Q Consensus 614 ~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~d~~g~t~ 665 (758)
+.+|..|+||||+|+..++.+ ++++|+++|+++..++..|.||
T Consensus 129 ~~~~~~g~t~l~~A~~~~~~~---------~~~~L~~~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 129 TTEADSGYTPMDLAVALGYRK---------VQQVIENHILKLFQSNLVPADP 171 (172)
T ss_dssp TCCCTTSCCHHHHHHHHTCHH---------HHHHHHHHHHHHSCC-------
T ss_pred cccCCCCCCHHHHHHHhCcHH---------HHHHHHHHHHHHhcccCCCCCC
Confidence 888888888888888888775 5556777777777777777776
No 58
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.96 E-value=5.2e-29 Score=237.81 Aligned_cols=160 Identities=22% Similarity=0.217 Sum_probs=135.7
Q ss_pred CcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHH
Q 035705 480 LDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALH 559 (758)
Q Consensus 480 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~ 559 (758)
+|.+|..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+.. +.+++..+..|.||||
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~ 106 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSK-GSNVNTKDFSGKTPLM 106 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTSCCHHH
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHH
Confidence 456677777777777777777777777777777777777777888888777777777766644 5667777788889999
Q ss_pred HHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHH
Q 035705 560 RAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENV 639 (758)
Q Consensus 560 ~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~l 639 (758)
+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|
T Consensus 107 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~L 186 (192)
T 2rfm_A 107 WSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF 186 (192)
T ss_dssp HHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999866655
Q ss_pred H
Q 035705 640 I 640 (758)
Q Consensus 640 l 640 (758)
+
T Consensus 187 l 187 (192)
T 2rfm_A 187 T 187 (192)
T ss_dssp H
T ss_pred H
Confidence 4
No 59
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=2.9e-29 Score=234.97 Aligned_cols=169 Identities=21% Similarity=0.319 Sum_probs=145.1
Q ss_pred CCCHHHHHHhcccccchHHHHHHHHHcCCC-cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHH
Q 035705 416 GQCANSIAKSSRWTLGFQQAVVDSIRSGNI-IQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIA 494 (758)
Q Consensus 416 g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~-~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A 494 (758)
+.||||.|+. .+..++++.+++.+.. ++..+..|.||||+|+..|+.+++++|++. |++++..+..|.||||+|
T Consensus 2 ~~~~L~~A~~----~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A 76 (172)
T 3v30_A 2 DSLSIHQLAA----QGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW-GADPHILAKERESALSLA 76 (172)
T ss_dssp --CCHHHHHH----TTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTCCCHHHHH
T ss_pred chhhHHHHHH----cCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCchhhcccCCCHHHHH
Confidence 4689999954 4789999999999987 889999999999999999999999999998 899999999999999999
Q ss_pred HHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHH
Q 035705 495 AAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLV 574 (758)
Q Consensus 495 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 574 (758)
+..|+.+++++|+++|++++.++..|. ||||+|+..|+.+++++|+
T Consensus 77 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~----------------------------------t~L~~A~~~~~~~~v~~Ll 122 (172)
T 3v30_A 77 STGGYTDIVGLLLERDVDINIYDWNGG----------------------------------TPLLYAVRGNHVKCVEALL 122 (172)
T ss_dssp HHTTCHHHHHHHHTTTCCTTCCCTTSC----------------------------------CHHHHHHHTTCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHcCCCCCCCCCCCC----------------------------------CHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999887665544 5566777778888888899
Q ss_pred hcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcH
Q 035705 575 SRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETA 623 (758)
Q Consensus 575 ~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~ 623 (758)
++|++++.+|..|+||||+|+..++.+++++|+++|+++..++..|.||
T Consensus 123 ~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 123 ARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171 (172)
T ss_dssp HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred HcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence 9999999999999999999999999999999999999988888888877
No 60
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.96 E-value=4.5e-32 Score=283.64 Aligned_cols=307 Identities=13% Similarity=0.026 Sum_probs=144.2
Q ss_pred cCcHHHHHHHHhCCCCCCcccccCcc-hhHHhh-hChHHHHHHHHhcCCCccccchHHHHHHHcCChhHHHHHHhccC--
Q 035705 99 AGNLTLVRKLLSLGANVNQKLFRGYA-TTAAVR-EDHLEILDLLIKAGACQEACEEALLETSYLGQARPAELLMATDL-- 174 (758)
Q Consensus 99 ~g~~~iv~~Ll~~ga~~~~~~~~g~~-l~~A~~-~g~~~iv~~Ll~~ga~~~~~~~~l~~A~~~g~~~iv~~Ll~~~~-- 174 (758)
.+..+.+..+++.+.+.+.. .+.+ +++|.. .++.+++++|+++|++. .||||.|+..|+.+++++|++.+.
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~--~~ll~~~~a~~~~~~~~~~~~l~~~g~~~---~T~Lh~Aa~~G~~e~v~~Ll~~ga~~ 118 (376)
T 2aja_A 44 LSYKEAIHIFLPGTKNMEQV--RQLLCLYYAHYNRNAKQLWSDAHKKGIKS---EVICFVAAITGCSSALDTLCLLLTSD 118 (376)
T ss_dssp SCHHHHHHHCCCCSSHHHHH--HHHHHHHHHHTTTTCTTHHHHHHHHTCCH---HHHHHHHHHHCCHHHHHHHTTC--CC
T ss_pred ccHHHHHHHHhcCCCCHHHH--HHHHHHHHHHhcCCCHHHHHHHHHcCCCc---CCHHHHHHHcCCHHHHHHHHHcCCcH
Confidence 44556666665544333211 1122 233433 35566666666666543 255555555555555555555443
Q ss_pred ----CCCCCCchHHHHHHhcCCHHHHHHHHhCCCCCCcchhhhhhccccccccCCCCchhHHHHhcCCHHHHHHHHHcCC
Q 035705 175 ----IRPQVSVHALVSACFRGFVNVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQAGV 250 (758)
Q Consensus 175 ----~~~~~~~t~L~~A~~~g~~~iv~~Ll~~g~d~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~~ga 250 (758)
..+..+.||||+|+..|+.++|++|+++|+++...+.. ..+.||||+|+..|+.++|++|+++|+
T Consensus 119 ~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~-----------~~~~TpLh~Aa~~G~~eiv~~Ll~~ga 187 (376)
T 2aja_A 119 EIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQ-----------AENYHAFRLAAENGHLHVLNRLCELAP 187 (376)
T ss_dssp SSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHS-----------HHHHHHHHHHHHTTCHHHHHHHHHSCG
T ss_pred HHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccC-----------CCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence 22233455666666666666666666666542211100 001456666666666666666666655
Q ss_pred CCcc--ccccCccccccccchhhhhhccccccccccchhhhhhhchHHHHHHHhhccCCCCCCCCchHHHHHH-HcCCHH
Q 035705 251 KMDI--KVRMGAWSWDMDTGEELRVGAGLAEDYCITWCAVEYFESSGAILHMLFQHISPNILHNGRTLIHHAI-LCNNAR 327 (758)
Q Consensus 251 ~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~g~t~L~~A~-~~g~~~ 327 (758)
+++. . +..|.||||+|+ ..|+.+
T Consensus 188 ~~~~~~~------------------------------------------------------d~~g~TpL~~Aa~~~G~~e 213 (376)
T 2aja_A 188 TEATAMI------------------------------------------------------QAENYYAFRWAAVGRGHHN 213 (376)
T ss_dssp GGHHHHH------------------------------------------------------HHHHHHHHHHHHSTTCCHH
T ss_pred ccchhcc------------------------------------------------------CCCCCCHHHHHHHHCCCHH
Confidence 5443 2 123445666666 666666
Q ss_pred HHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Q 035705 328 AVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICARYKHEECLKFLASEGA 407 (758)
Q Consensus 328 ~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~ 407 (758)
+|++|++.|+ .|.||||.|+..|+.+++++|+++|++++..+ ++++.|+..|+.++++..-.
T Consensus 214 iv~~Ll~~ga-----------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~----~~l~~A~~~g~~~vv~~~~~--- 275 (376)
T 2aja_A 214 VINFLLDCPV-----------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMH----DAFKLSNPDGVFDLVTKSEC--- 275 (376)
T ss_dssp HHHHHTTSHH-----------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHH----TTTTTTSSSSCCCCSSHHHH---
T ss_pred HHHHHHhCCC-----------ccchHHHHHHHCCCHHHHHHHHhcCccccccc----HHHHHHHHCCChhhhcHHhh---
Confidence 6666655442 14455666666666556666655555544322 23444554554442211000
Q ss_pred CCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhc--------CCC
Q 035705 408 DLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWA--------DVD 479 (758)
Q Consensus 408 ~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~--------~~~ 479 (758)
.....+++.++..+. .+..+.+++|++.. |++
T Consensus 276 ----------------------~~~~~~~~~li~~~~------------------~~~~~~~~~Ll~~~~vk~l~~~g~~ 315 (376)
T 2aja_A 276 ----------------------LQGFYMLRNLIRRND------------------EVLLDDIRFLLSIPGIKALAPTATI 315 (376)
T ss_dssp ----------------------HHHHHHHHHHHHHCC------------------GGGHHHHHHHHTSTTTGGGSSCCSS
T ss_pred ----------------------hhhHHHHHHHHHcch------------------hhHHHHHHHHHhChhhhhhhccCCC
Confidence 000112333333331 12245555655531 233
Q ss_pred CcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHH
Q 035705 480 LDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVI 540 (758)
Q Consensus 480 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll 540 (758)
+ ..+.||||+|+..|+.+++++|++.| ..++..++|++.+|-.+|..++.+.-+
T Consensus 316 ~----n~~~~~L~~A~~~g~~e~v~lLl~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (376)
T 2aja_A 316 P----GDANELLRLALRLGNQGACALLLSIP---SVLALTKANNYYINETGGRLDLRAVAL 369 (376)
T ss_dssp T----TCCCHHHHHHHHHTCTTHHHHHTTSH---HHHHSCC--------------------
T ss_pred C----CCccHHHHHHHHcCcHHHHHHHHcCh---HHHHHHHHhccccccccccccHHHHHH
Confidence 3 34568889998888889999888865 556778888888888888888776443
No 61
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=1.3e-28 Score=229.29 Aligned_cols=153 Identities=27% Similarity=0.349 Sum_probs=106.4
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCC
Q 035705 453 RFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRN 532 (758)
Q Consensus 453 ~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 532 (758)
|.||||.|+..|+.+++++|++. +.+++.++..|.||||+|+..|+.+++++|+++|++++
T Consensus 3 ~~t~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------------ 63 (167)
T 3v31_A 3 NSLSVHQLAAQGEMLYLATRIEQ-ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ------------------ 63 (167)
T ss_dssp TCCCHHHHHHTTCHHHHHHHHHH-SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT------------------
T ss_pred CcchHHHHHHCCCHHHHHHHHHc-CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC------------------
Confidence 44555555555555555555554 45555555555555555555555555555555555544
Q ss_pred hhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCC
Q 035705 533 GEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAK 612 (758)
Q Consensus 533 ~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad 612 (758)
..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 64 ----------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 127 (167)
T 3v31_A 64 ----------------LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 127 (167)
T ss_dssp ----------------CCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred ----------------CcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 4455666677777777888888888888888888888888888888888888888888888888
Q ss_pred CCCCCCCCCcHHHHHHHCCChhhHHHHH
Q 035705 613 CDIENARNETALALARENGNGNEAENVI 640 (758)
Q Consensus 613 ~~~~d~~g~t~L~~A~~~~~~~~~~~ll 640 (758)
++.+|..|+||||+|+..|+.+++++|+
T Consensus 128 ~~~~~~~g~t~l~~A~~~~~~~~~~~L~ 155 (167)
T 3v31_A 128 PTIETDSGYNSMDLAVALGYRSVQQVIE 155 (167)
T ss_dssp TTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred CCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 8888888888888888888887555443
No 62
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=1.2e-28 Score=228.23 Aligned_cols=156 Identities=33% Similarity=0.456 Sum_probs=102.4
Q ss_pred CcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCH
Q 035705 488 FSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDF 567 (758)
Q Consensus 488 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~ 567 (758)
.||||.|+..|+.+++++|+++|++++..+..|.||||+|+. |+.+++++|+.. +.+++..+..|.||||+|+..|+.
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~ 83 (162)
T 1ihb_A 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLR-GANPDLKDRTGFAVIHDAARAGFL 83 (162)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred hhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCH
Confidence 355555555555555555555555555555555555555555 555555544432 445555555666777777777777
Q ss_pred HHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCC-CCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHH
Q 035705 568 DLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAK-CDIENARNETALALARENGNGNEAENVILDELAL 646 (758)
Q Consensus 568 ~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad-~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~ 646 (758)
+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+ +++
T Consensus 84 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~---------~~~ 154 (162)
T 1ihb_A 84 DTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE---------VVS 154 (162)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHH---------HHH
T ss_pred HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHH---------HHH
Confidence 777777777777777777777777777777777777777777776 4777777777777777777775 455
Q ss_pred HHHhCCCc
Q 035705 647 TLVLDGTY 654 (758)
Q Consensus 647 ~L~~~g~~ 654 (758)
+|+++|||
T Consensus 155 ~Ll~~GAd 162 (162)
T 1ihb_A 155 LMQANGAG 162 (162)
T ss_dssp HHHHTC--
T ss_pred HHHHhCCC
Confidence 66667664
No 63
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=3.5e-28 Score=226.67 Aligned_cols=151 Identities=32% Similarity=0.447 Sum_probs=107.5
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcC
Q 035705 486 DGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRG 565 (758)
Q Consensus 486 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g 565 (758)
.+.++|+.|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+. .+.+++..+..|.||||+|+..|
T Consensus 13 ~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~ 91 (169)
T 2y1l_E 13 DLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLK-NGADVNAVDHAGMTPLRLAALFG 91 (169)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTT
T ss_pred cccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcC
Confidence 33455555555555555555555555555555555555555555555555554443 24455555666777778888888
Q ss_pred CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHH
Q 035705 566 DFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAE 637 (758)
Q Consensus 566 ~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~ 637 (758)
+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|++++.+|..|+||||+|++.++.++++
T Consensus 92 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~ 163 (169)
T 2y1l_E 92 HLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAE 163 (169)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHH
Confidence 888888888888888888888888888888888888888888888888888888888888888888886443
No 64
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.96 E-value=1.7e-28 Score=234.31 Aligned_cols=163 Identities=21% Similarity=0.232 Sum_probs=156.3
Q ss_pred cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHH
Q 035705 446 IQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAIT 525 (758)
Q Consensus 446 ~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 525 (758)
++.++..|.||||+|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 106 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVEN-FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLM 106 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHH-HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHH
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHh-ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Confidence 567888999999999999999999999998 7999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHH
Q 035705 526 LAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQL 605 (758)
Q Consensus 526 ~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~ 605 (758)
+|+..|+.+++++|+. .+.+++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++
T Consensus 107 ~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~ 185 (192)
T 2rfm_A 107 WSIIFGYSEMSYFLLE-HGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKI 185 (192)
T ss_dssp HHHHHTCHHHHHHHHH-TTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHH
Confidence 9999999999997775 588899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCC
Q 035705 606 LISSG 610 (758)
Q Consensus 606 Ll~~g 610 (758)
|+++|
T Consensus 186 Ll~~~ 190 (192)
T 2rfm_A 186 FTEVR 190 (192)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 99865
No 65
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=1.7e-28 Score=248.16 Aligned_cols=192 Identities=23% Similarity=0.256 Sum_probs=124.5
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCC--CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCC-CCCCcccCCCCHHHHHHhcc-
Q 035705 352 RPIHLAARLGSAKILRRLISAGCN--INSRTAAGETAAMICARYKHEECLKFLASEGA-DLGLINYAGQCANSIAKSSR- 427 (758)
Q Consensus 352 t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~-~~~~~~~~g~t~l~~a~~~~- 427 (758)
+++|.|+..|+.+.++.+++.+.+ +|..|..|.||||+|+..|+.+++++|++.|+ +++..+..|.||+++|+...
T Consensus 78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~ 157 (276)
T 4hbd_A 78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATL 157 (276)
T ss_dssp TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHh
Confidence 355555666666666665555444 55566666666666666666666666666665 55656556665555554221
Q ss_pred cccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHH
Q 035705 428 WTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLL 507 (758)
Q Consensus 428 ~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 507 (758)
...+..++++.|++.|...+..+..|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+
T Consensus 158 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~-gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll 236 (276)
T 4hbd_A 158 KTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLAC-EADVNVQDDDGSTALMCACEHGHKEIAGLLL 236 (276)
T ss_dssp CSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred hhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
Confidence 123445555555555555555556666777777777777777777777 6777777777777777777777777777777
Q ss_pred h-CCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhc
Q 035705 508 H-AGANIKLQNKYGETAITLAELNRNGEVLEQVILEYA 544 (758)
Q Consensus 508 ~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~ 544 (758)
+ .|++++.+|..|.||||+|+..|+.+++++|+.+.+
T Consensus 237 ~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~ 274 (276)
T 4hbd_A 237 AVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN 274 (276)
T ss_dssp TSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred hcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence 7 677777777777777777777777777776666543
No 66
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.96 E-value=3.1e-28 Score=229.46 Aligned_cols=169 Identities=18% Similarity=0.239 Sum_probs=158.2
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHc
Q 035705 451 ASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELN 530 (758)
Q Consensus 451 ~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 530 (758)
.++.++|+.|+..|+.+++++|++..+.+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 82 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH 82 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence 34678999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCC
Q 035705 531 RNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSG 610 (758)
Q Consensus 531 ~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g 610 (758)
|+.+++++|+. .+.+++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+|||++|+..++.+++++|+++|
T Consensus 83 ~~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g 161 (179)
T 3f6q_A 83 GHRDIVQKLLQ-YKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMG 161 (179)
T ss_dssp TCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence 99999997765 57889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCC
Q 035705 611 AKCDIENARN 620 (758)
Q Consensus 611 ad~~~~d~~g 620 (758)
++++..+..+
T Consensus 162 ~~~~~~~~~~ 171 (179)
T 3f6q_A 162 QNLNRIPYKD 171 (179)
T ss_dssp CCCSCBCCCC
T ss_pred cCcccCCccc
Confidence 9999877654
No 67
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.96 E-value=3.3e-31 Score=259.51 Aligned_cols=184 Identities=14% Similarity=0.103 Sum_probs=167.6
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHc
Q 035705 451 ASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELN 530 (758)
Q Consensus 451 ~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 530 (758)
.++.||||.|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..
T Consensus 19 ~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~ 97 (229)
T 2vge_A 19 LNPLVLLLDAALTGELEVVQQAVKE-MNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASC 97 (229)
T ss_dssp SCHHHHHHHHHHHTCHHHHHHHHHH-SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred cchhHHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc
Confidence 4456899999999999999999998 899999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHhhccccCCCC-CCCchHHHHH--HHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHH
Q 035705 531 RNGEVLEQVILEYALEEGQKG-SAGFYALHRA--AKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLI 607 (758)
Q Consensus 531 ~~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~A--~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll 607 (758)
|+.+++++|+. .+.+++..+ ..|+||||+| +..|+.+++++|+++|++++.+|..|.||++.++... ..++|+
T Consensus 98 g~~~~v~~Ll~-~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~---~~~~ll 173 (229)
T 2vge_A 98 NDTVICMALVQ-HGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEF---GDELSF 173 (229)
T ss_dssp TCHHHHHHHHT-TTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSS---TTBCCB
T ss_pred CCHHHHHHHHH-cCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhcc---ccccCc
Confidence 99999997774 577788775 6999999999 9999999999999999999999999999999765544 336889
Q ss_pred hCCCC--CCCCCCCCCcHHHHHHHCCChhhHHHH
Q 035705 608 SSGAK--CDIENARNETALALARENGNGNEAENV 639 (758)
Q Consensus 608 ~~gad--~~~~d~~g~t~L~~A~~~~~~~~~~~l 639 (758)
+.|++ ++.+|..|+||||+|++.|+.++++..
T Consensus 174 ~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~ 207 (229)
T 2vge_A 174 REGESVTVLRRDGPEETDWWWAALHGQEGYVPRN 207 (229)
T ss_dssp CTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred cccccccccccCCCcccHHHHHHHcCCcceeehh
Confidence 99999 778999999999999999999987743
No 68
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=5.7e-28 Score=224.92 Aligned_cols=161 Identities=21% Similarity=0.246 Sum_probs=143.6
Q ss_pred CCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHH
Q 035705 415 AGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIA 494 (758)
Q Consensus 415 ~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A 494 (758)
.|.||||.|+. .+..+++++|++.+.+++..+..|.||||+|+..|+.+++++|++. |++++..+..|.||||+|
T Consensus 2 ~~~t~L~~A~~----~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A 76 (167)
T 3v31_A 2 ANSLSVHQLAA----QGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN-GADPQLLGKGRESALSLA 76 (167)
T ss_dssp TTCCCHHHHHH----TTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHH
T ss_pred CCcchHHHHHH----CCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCcCCCCCcHHHHH
Confidence 58899999964 5789999999999999999999999999999999999999999998 899999999999999999
Q ss_pred HHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHH
Q 035705 495 AAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLV 574 (758)
Q Consensus 495 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 574 (758)
+..|+.+++++|+++|++++.++..|. ||||+|+..|+.+++++|+
T Consensus 77 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~----------------------------------t~L~~A~~~~~~~~v~~Ll 122 (167)
T 3v31_A 77 CSKGYTDIVKMLLDCGVDVNEYDWNGG----------------------------------TPLLYAVHGNHVKCVKMLL 122 (167)
T ss_dssp HHHTCHHHHHHHHHHTCCTTCCCTTSC----------------------------------CHHHHHHHTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCCCCcCCCCCC----------------------------------CHHHHHHHcCCHHHHHHHH
Confidence 999999999999999998877765544 5566667777788888888
Q ss_pred hcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCC
Q 035705 575 SRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCD 614 (758)
Q Consensus 575 ~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~ 614 (758)
++|++++.+|..|+||||+|+..|+.+++++|+++++++.
T Consensus 123 ~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~ 162 (167)
T 3v31_A 123 ESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLL 162 (167)
T ss_dssp HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 8899999899999999999999999999999988876643
No 69
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.95 E-value=4.1e-28 Score=224.65 Aligned_cols=158 Identities=26% Similarity=0.314 Sum_probs=148.7
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcC
Q 035705 452 SRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNR 531 (758)
Q Consensus 452 ~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 531 (758)
...||||.|+..|+.+++++|++. +.+++.++..|.||||+|+. |+.+++++|+++|++++.++..|.||||+|+..|
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 81 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG 81 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTS-CCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhC-CCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 345899999999999999999997 89999999999999999999 9999999999999999999999999999999999
Q ss_pred ChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCcHHHHHHHcCcHHHHHHHHhCC
Q 035705 532 NGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYD-VNASDADGYTPLMLAAKSGHGSVCQLLISSG 610 (758)
Q Consensus 532 ~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g 610 (758)
+.+++++|+. .+.+++..|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|
T Consensus 82 ~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 160 (162)
T 1ihb_A 82 FLDTLQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160 (162)
T ss_dssp CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred CHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhC
Confidence 9999997775 5788999999999999999999999999999999998 6999999999999999999999999999999
Q ss_pred CC
Q 035705 611 AK 612 (758)
Q Consensus 611 ad 612 (758)
||
T Consensus 161 Ad 162 (162)
T 1ihb_A 161 AG 162 (162)
T ss_dssp --
T ss_pred CC
Confidence 86
No 70
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=2.7e-30 Score=253.09 Aligned_cols=193 Identities=17% Similarity=0.107 Sum_probs=165.4
Q ss_pred HHHHHHhcCCCCccc---CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhcc
Q 035705 469 LKKLIEWADVDLDEQ---DADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYAL 545 (758)
Q Consensus 469 v~~Ll~~~~~~~~~~---~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~ 545 (758)
++.|++. +.+++.. +..+.||||.|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+.. +.
T Consensus 1 v~~ll~~-~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga 78 (229)
T 2vge_A 1 MRSVLRK-AGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITA-GA 78 (229)
T ss_dssp ----------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TC
T ss_pred Ceehhcc-CCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CC
Confidence 3566666 5666544 45667889999999999999999999999999999999999999999999999977754 88
Q ss_pred ccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHH--HHcCcHHHHHHHHhCCCCCCCCCCCCCc
Q 035705 546 EEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASD-ADGYTPLMLA--AKSGHGSVCQLLISSGAKCDIENARNET 622 (758)
Q Consensus 546 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d-~~g~tpL~~A--~~~~~~~iv~~Ll~~gad~~~~d~~g~t 622 (758)
+++..|..|+||||+|+..|+.+++++|+++|++++.++ ..|+||||+| +..|+.+++++|+++|++++.+|..|.|
T Consensus 79 ~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~ 158 (229)
T 2vge_A 79 NVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVY 158 (229)
T ss_dssp CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEE
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchH
Confidence 999999999999999999999999999999999999997 6999999999 9999999999999999999999999999
Q ss_pred HHHHHHHCCChhhHHHHHHHHHHHHHHhCCCc--cccccccCCCcchHHHHHHhc
Q 035705 623 ALALARENGNGNEAENVILDELALTLVLDGTY--VKKHTKCGKGSPHVKLLKMWG 675 (758)
Q Consensus 623 ~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~--~~~~d~~g~t~l~~a~~~~~~ 675 (758)
|++.++.....+ +|++.|++ ++.+|..|+||||+|+.....
T Consensus 159 ~l~~~~~~~~~~------------~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~ 201 (229)
T 2vge_A 159 ALWDYSAEFGDE------------LSFREGESVTVLRRDGPEETDWWWAALHGQE 201 (229)
T ss_dssp ESSCBCCSSTTB------------CCBCTTCEEEEEESSCTTCSSEEEEEETTEE
T ss_pred HHHHHhhccccc------------cCccccccccccccCCCcccHHHHHHHcCCc
Confidence 999765554332 67788998 788999999999999765433
No 71
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.95 E-value=1.4e-27 Score=222.56 Aligned_cols=158 Identities=26% Similarity=0.380 Sum_probs=150.0
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHc
Q 035705 451 ASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELN 530 (758)
Q Consensus 451 ~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 530 (758)
..+.++|+.|++.|+.+++++|++. |++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus 12 ~~~~~~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 90 (169)
T 2y1l_E 12 SDLGKKLLEAARAGRDDEVRILMAN-GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALF 90 (169)
T ss_dssp -CHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred CcccchHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence 4456899999999999999999998 899999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCC
Q 035705 531 RNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSG 610 (758)
Q Consensus 531 ~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g 610 (758)
|+.+++++|+. .+.+++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.|
T Consensus 91 ~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 91 GHLEIVEVLLK-NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp TCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred CCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 99999997765 57888999999999999999999999999999999999999999999999999999999999999987
No 72
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=4.1e-28 Score=228.66 Aligned_cols=169 Identities=21% Similarity=0.224 Sum_probs=155.3
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHH
Q 035705 485 ADGFSAAMIAAAAGHVEAFRLLLHA-GANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563 (758)
Q Consensus 485 ~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~ 563 (758)
.++.++|+.|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|+.. +.+++..+..|.||||+|+.
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~ 81 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR-GARINVMNRGDDTPLHLAAS 81 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHH
Confidence 4578999999999999999999988 778999999999999999999999999977755 78899999999999999999
Q ss_pred cCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHH
Q 035705 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDE 643 (758)
Q Consensus 564 ~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~ 643 (758)
.|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|++++.+|..|+|||++|+..++.+
T Consensus 82 ~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~--------- 152 (179)
T 3f6q_A 82 HGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLREL--------- 152 (179)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHH---------
T ss_pred cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHH---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999887764
Q ss_pred HHHHHHhCCCccccccccCC
Q 035705 644 LALTLVLDGTYVKKHTKCGK 663 (758)
Q Consensus 644 ~~~~L~~~g~~~~~~d~~g~ 663 (758)
++++|++.|++++..+..+.
T Consensus 153 ~~~~L~~~g~~~~~~~~~~~ 172 (179)
T 3f6q_A 153 LRERAEKMGQNLNRIPYKDT 172 (179)
T ss_dssp HHHHHHHTTCCCSCBCCCCT
T ss_pred HHHHHHHhhcCcccCCcccc
Confidence 67799999999998877653
No 73
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.95 E-value=9.3e-28 Score=219.75 Aligned_cols=148 Identities=28% Similarity=0.347 Sum_probs=109.8
Q ss_pred cHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHH
Q 035705 489 SAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFD 568 (758)
Q Consensus 489 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~ 568 (758)
|||+.|+..|+.+++++|++.|++++ .+..|.||||+|+..|+.+++++|+ +.+.+++..+..|+||||+|+..|+.+
T Consensus 4 ~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~ 81 (153)
T 1awc_B 4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLL-RAGVSRDARTKVDRTPLHMAASEGHAN 81 (153)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHH-TTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHcChHH
Confidence 45555555555555555555555443 3444555555555555555555444 234444555566777888888888999
Q ss_pred HHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHH
Q 035705 569 LVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAEN 638 (758)
Q Consensus 569 ~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ 638 (758)
++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++
T Consensus 82 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~ 151 (153)
T 1awc_B 82 IVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEI 151 (153)
T ss_dssp HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999986654
No 74
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.95 E-value=2.4e-29 Score=248.94 Aligned_cols=204 Identities=15% Similarity=0.117 Sum_probs=146.9
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHc
Q 035705 451 ASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELN 530 (758)
Q Consensus 451 ~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 530 (758)
..|.||||.|+..++.+.++.|+++ |++++.. ..|.||||.|+..|+.+++++|++.|++++.+|..|.||||+|+..
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~-g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~ 80 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAH-GMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA 80 (239)
T ss_dssp ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhcc-CCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence 4578999999999999999999998 8898864 7789999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCC-cHHHHH--HHcCcHHHHHHHH
Q 035705 531 RNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGY-TPLMLA--AKSGHGSVCQLLI 607 (758)
Q Consensus 531 ~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~-tpL~~A--~~~~~~~iv~~Ll 607 (758)
|+.+++++|+. .+.+++..|..|+||||+|+..|+.+++++|+++|++++.++..|. ||||+| +..|+.+++++|+
T Consensus 81 g~~~~v~~Ll~-~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll 159 (239)
T 1ycs_B 81 GHTEIVKFLVQ-FGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY 159 (239)
T ss_dssp TCHHHHHHHHH-HTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHH
T ss_pred CCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHH
Confidence 99999998775 5888999999999999999999999999999999999999998887 999999 7889999999999
Q ss_pred hCCCCCCCC---------CCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCc------cccccccCCCcchH
Q 035705 608 SSGAKCDIE---------NARNETALALARENGNGNEAENVILDELALTLVLDGTY------VKKHTKCGKGSPHV 668 (758)
Q Consensus 608 ~~gad~~~~---------d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~------~~~~d~~g~t~l~~ 668 (758)
++|++++.. +..+.++++++...|..- ..|.+.+.+ ....++.|.+|.+|
T Consensus 160 ~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~~i-----------~vl~~~~~~~~~Ww~~~~~~~~G~~P~~y 224 (239)
T 1ycs_B 160 GVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGDCM-----------TIIHREDEDEIEWWWARLNDKEGYVPRNL 224 (239)
T ss_dssp HHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSCEE-----------EECCCCTTSCSSEEEEEETTEEEEEEGGG
T ss_pred HhhhcccccccceEEEEeccCCCCCCcccccCCCEE-----------EEEEecCCCCCCEEEEEECCcEEEeehHH
Confidence 999998876 566889999888887631 233333433 23455667777665
No 75
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.95 E-value=1.4e-27 Score=221.78 Aligned_cols=160 Identities=25% Similarity=0.305 Sum_probs=109.3
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHH
Q 035705 450 NASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAEL 529 (758)
Q Consensus 450 ~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 529 (758)
+.++.|||+.|+..|+.+++++|++..+.+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+.
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 84 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACS 84 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHH
Confidence 44566888888888888888888887677788888888888888888888888888888888888777777777666666
Q ss_pred cCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhC
Q 035705 530 NRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISS 609 (758)
Q Consensus 530 ~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ 609 (758)
.|+.+++++|+. .+.+++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+. ++.+++++|+++
T Consensus 85 ~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~ 162 (165)
T 3twr_A 85 YGHYEVAELLVK-HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGD 162 (165)
T ss_dssp TTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC
T ss_pred cCcHHHHHHHHh-CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhc
Confidence 666666654443 345555555555566666666666666666666666655555556666655444 555566665555
Q ss_pred CC
Q 035705 610 GA 611 (758)
Q Consensus 610 ga 611 (758)
||
T Consensus 163 gA 164 (165)
T 3twr_A 163 AA 164 (165)
T ss_dssp --
T ss_pred cc
Confidence 54
No 76
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.95 E-value=2e-27 Score=220.79 Aligned_cols=160 Identities=26% Similarity=0.336 Sum_probs=145.2
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHh-CCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHH
Q 035705 483 QDADGFSAAMIAAAAGHVEAFRLLLH-AGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRA 561 (758)
Q Consensus 483 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A 561 (758)
.+.+|.||||.|+..|+.++++.|++ .+.+++..+..|.||||+|+..|+.+++++|+. .+.+++..|..|+||||+|
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A 82 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ-HGADVHAKDKGGLVPLHNA 82 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHh-cCCCCCccCCCCCCHHHHH
Confidence 35678899999999999999999998 567888889999999999999999999997775 4788999999999999999
Q ss_pred HHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHH
Q 035705 562 AKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVIL 641 (758)
Q Consensus 562 ~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~ 641 (758)
+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|++ ++.+
T Consensus 83 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~------- 154 (165)
T 3twr_A 83 CSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTD------- 154 (165)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHH-------
T ss_pred HHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChH-------
Confidence 99999999999999999999999999999999999999999999999999999999999999999877 7775
Q ss_pred HHHHHHHHhCCC
Q 035705 642 DELALTLVLDGT 653 (758)
Q Consensus 642 ~~~~~~L~~~g~ 653 (758)
++++|+++|+
T Consensus 155 --i~~~L~~~gA 164 (165)
T 3twr_A 155 --IQDLLRGDAA 164 (165)
T ss_dssp --HHHHHHTC--
T ss_pred --HHHHHhhccc
Confidence 5667777765
No 77
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.95 E-value=1.1e-26 Score=212.68 Aligned_cols=150 Identities=21% Similarity=0.264 Sum_probs=143.0
Q ss_pred CcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCh
Q 035705 454 FSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNG 533 (758)
Q Consensus 454 ~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 533 (758)
.|+|+.|+..|+.+++++|++. |.+++ .+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~-g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 80 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMAN-GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA 80 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHH-TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred cHHHHHHHHcCCHHHHHHHHHc-CCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChH
Confidence 4799999999999999999998 77776 588999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHH
Q 035705 534 EVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLL 606 (758)
Q Consensus 534 ~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~L 606 (758)
+++++|+. .+.+++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|
T Consensus 81 ~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 81 NIVEVLLK-HGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHHT-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 99997775 5888999999999999999999999999999999999999999999999999999999999987
No 78
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.94 E-value=1.5e-26 Score=212.62 Aligned_cols=151 Identities=27% Similarity=0.335 Sum_probs=104.7
Q ss_pred CcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCCh
Q 035705 454 FSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNG 533 (758)
Q Consensus 454 ~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 533 (758)
.||||.|+..|+.+++++|++..+.+++..+..|.||||+ +..|+.+++++|+++|++++.+|..|
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g------------- 68 (156)
T 1bd8_A 3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSG------------- 68 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTS-------------
T ss_pred chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCC-------------
Confidence 3677777777777777777776445677777777777777 66777777777777777766655544
Q ss_pred hHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCC
Q 035705 534 EVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKC 613 (758)
Q Consensus 534 ~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~ 613 (758)
.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++ +++
T Consensus 69 ---------------------~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~ 126 (156)
T 1bd8_A 69 ---------------------TSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDL 126 (156)
T ss_dssp ---------------------CCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCT
T ss_pred ---------------------CCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCC
Confidence 4556666666666666667777777777777777777777777777777777776 777
Q ss_pred CCCCCCCCcHHHHHHHCCChhhHHHHH
Q 035705 614 DIENARNETALALARENGNGNEAENVI 640 (758)
Q Consensus 614 ~~~d~~g~t~L~~A~~~~~~~~~~~ll 640 (758)
+.+|..|+||||+|+..|+.++++.|+
T Consensus 127 ~~~~~~g~t~l~~A~~~~~~~~v~~Ll 153 (156)
T 1bd8_A 127 HRRDARGLTPLELALQRGAQDLVDILQ 153 (156)
T ss_dssp TCCCTTSCCHHHHHHHSCCHHHHHHHH
T ss_pred CCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 777777777777777777777666654
No 79
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.94 E-value=1.4e-26 Score=212.82 Aligned_cols=121 Identities=16% Similarity=0.208 Sum_probs=110.5
Q ss_pred CCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCc
Q 035705 520 GETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGH 599 (758)
Q Consensus 520 g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~ 599 (758)
+.|||+.|+..|+.+++++|+...+.+++..+..|.||||+ +..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 80 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF 80 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence 45778888888888888877777556777788889999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHH
Q 035705 600 GSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVIL 641 (758)
Q Consensus 600 ~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~ 641 (758)
.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+.
T Consensus 81 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 122 (156)
T 1bd8_A 81 LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA 122 (156)
T ss_dssp HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHh
Confidence 999999999999999999999999999999999999998874
No 80
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.94 E-value=8.2e-28 Score=237.89 Aligned_cols=167 Identities=22% Similarity=0.225 Sum_probs=120.9
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHH
Q 035705 484 DADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAK 563 (758)
Q Consensus 484 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~ 563 (758)
+..|.||||.|+..++.++++.|+++|++++.. ..|.||||.|+..|+.++++.|+. .+.+++..|..|+||||+|+.
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~ 79 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIY-EVDDPSLPNDEGITALHNAVC 79 (239)
T ss_dssp ------------------------------------CHHHHHHHHHHTCHHHHHHHTS-TTSSCCCCCTTSCCHHHHHHH
T ss_pred CccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHH
Confidence 356899999999999999999999999999864 679999999999999999998775 455899999999999999999
Q ss_pred cCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCC-cHHHHH--HHCCChhhHHHHH
Q 035705 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNE-TALALA--RENGNGNEAENVI 640 (758)
Q Consensus 564 ~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~-t~L~~A--~~~~~~~~~~~ll 640 (758)
.|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|. ||||+| +..|+.+
T Consensus 80 ~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~------ 153 (239)
T 1ycs_B 80 AGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQ------ 153 (239)
T ss_dssp HTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCC------
T ss_pred cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHH------
Confidence 9999999999999999999999999999999999999999999999999999998887 999999 7888887
Q ss_pred HHHHHHHHHhCCCcccccccc
Q 035705 641 LDELALTLVLDGTYVKKHTKC 661 (758)
Q Consensus 641 ~~~~~~~L~~~g~~~~~~d~~ 661 (758)
++++|+++|++++..+..
T Consensus 154 ---~~~~Ll~~~a~~~~~~~~ 171 (239)
T 1ycs_B 154 ---CSQFLYGVQEKMGIMNKG 171 (239)
T ss_dssp ---HHHHHHHHHHHTTTTGGG
T ss_pred ---HHHHHHHhhhcccccccc
Confidence 555777788888877544
No 81
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.93 E-value=1.7e-26 Score=217.45 Aligned_cols=157 Identities=13% Similarity=0.086 Sum_probs=135.7
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhcCCCCcccC-CCCCcHHHHHHHcCCH----HHHHHHHhCCCCCCcCCCCCCcHHHHH
Q 035705 453 RFSPLMFVTQANDVDALKKLIEWADVDLDEQD-ADGFSAAMIAAAAGHV----EAFRLLLHAGANIKLQNKYGETAITLA 527 (758)
Q Consensus 453 ~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A 527 (758)
++++|+.|++.|+.+.++.+++. +++..+ ..|+||||+|+.+++. +++++|+++|++++.+|..|+||||+|
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~---~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a 82 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEK---GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPL 82 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHH---SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhc---CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence 35789999999999999999986 345555 7799999999999975 589999999999999999999999999
Q ss_pred HHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCC-cHHHHHHHcC-----cHH
Q 035705 528 ELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGY-TPLMLAAKSG-----HGS 601 (758)
Q Consensus 528 ~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~-tpL~~A~~~~-----~~~ 601 (758)
+..++.++.. ..+++++|+++|+++|.+|..|+ ||||+|+..+ +.+
T Consensus 83 ~~~~~~~~~~----------------------------~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~ 134 (186)
T 3t8k_A 83 FQGGGNDITG----------------------------TTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIP 134 (186)
T ss_dssp HHHCTTCHHH----------------------------HHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHH
T ss_pred HHcCCcchhh----------------------------HHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHH
Confidence 8877655432 25899999999999999999999 9999999844 467
Q ss_pred HHHHHHh-CCCCCCCCCCCCCcHHHHHHHCCChhhHHHHH
Q 035705 602 VCQLLIS-SGAKCDIENARNETALALARENGNGNEAENVI 640 (758)
Q Consensus 602 iv~~Ll~-~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll 640 (758)
++++|++ +|+|++.+|..|+||||+|++.++.++++.|.
T Consensus 135 iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~ 174 (186)
T 3t8k_A 135 LYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMME 174 (186)
T ss_dssp HHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 9999999 99999999999999999999999998666443
No 82
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.93 E-value=5.8e-26 Score=208.43 Aligned_cols=145 Identities=28% Similarity=0.280 Sum_probs=101.9
Q ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCch-HHH
Q 035705 481 DEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFY-ALH 559 (758)
Q Consensus 481 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t-~L~ 559 (758)
+..+..|.||||+|+..|+.+++++|+++|++++..+..|+||||+|+ .|+.+++++|+. .+.+++..+..|.| |||
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~-~g~~~~~~d~~g~ttpL~ 83 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLL-HGAEPNCADPATLTRPVH 83 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHT-TTCCCCCCCTTTCCCHHH
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHH-cCCCCCCcCCCCCcHHHH
Confidence 344566677777777777777777777777777777777777777764 677777765554 35666777777887 999
Q ss_pred HHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Q 035705 560 RAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALA 627 (758)
Q Consensus 560 ~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A 627 (758)
+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||.+-+
T Consensus 84 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 84 DAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred HHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999998744
No 83
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.93 E-value=1.3e-25 Score=200.69 Aligned_cols=134 Identities=26% Similarity=0.334 Sum_probs=103.1
Q ss_pred CCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCC-Cc
Q 035705 477 DVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSA-GF 555 (758)
Q Consensus 477 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~-g~ 555 (758)
+.+++..+..|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+. |+.+++++|+. .+.+++..+.. |+
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~-~g~~~~~~~~~~g~ 79 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLL-HGAEPNCADPATLT 79 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHH-HTCCSSCCBTTTTB
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHH-CCCCCCCcCCCCCC
Confidence 46777778888888888888888888888888888888777777777777777 77777765554 45566666666 77
Q ss_pred hHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCC
Q 035705 556 YALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAK 612 (758)
Q Consensus 556 t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad 612 (758)
||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|||
T Consensus 80 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 80 RPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 777777878888888888888888888888888888888888888888888887775
No 84
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.92 E-value=1.8e-25 Score=199.83 Aligned_cols=134 Identities=18% Similarity=0.202 Sum_probs=125.8
Q ss_pred CCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCC-CC
Q 035705 510 GANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDAD-GY 588 (758)
Q Consensus 510 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~-g~ 588 (758)
+++++..+..|.||||+|+..|+.+++++|+.. +.+++..+..|+||||+|+. |+.+++++|+++|++++.+|.. |+
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~ 79 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEA-GADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLT 79 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTB
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHc-CCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCC
Confidence 578899999999999999999999999988865 78899999999999999999 9999999999999999999999 99
Q ss_pred cHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCc
Q 035705 589 TPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTY 654 (758)
Q Consensus 589 tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~ 654 (758)
||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+ ++++|+++|+|
T Consensus 80 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~---------~~~~Ll~~Gad 136 (136)
T 1d9s_A 80 RPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRD---------IARYLHAATGD 136 (136)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHH---------HHHHHHHHHCC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHH---------HHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999986 55677777775
No 85
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.92 E-value=1.8e-25 Score=205.17 Aligned_cols=144 Identities=17% Similarity=0.147 Sum_probs=118.3
Q ss_pred CcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCc-HHH
Q 035705 514 KLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYT-PLM 592 (758)
Q Consensus 514 ~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t-pL~ 592 (758)
+..+..|.||||+|+..|+.+++++|+.. +.+++..+..|+||||+|+ .|+.+++++|+++|++++.+|..|+| |||
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~ 83 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEA-GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVH 83 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTT-TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHH
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHH
Confidence 44577899999999999999999988865 7889999999999999986 89999999999999999999999999 999
Q ss_pred HHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCccccccccCCCcchH
Q 035705 593 LAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTKCGKGSPHV 668 (758)
Q Consensus 593 ~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~d~~g~t~l~~ 668 (758)
+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+ ++++|+++|++++.+|..|.||.+.
T Consensus 84 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~---------~v~~Ll~~ga~~~~~~~~g~t~~~~ 150 (156)
T 1bi7_B 84 DAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRD---------VARYLRAAAGGTRGSNHARIDAAEG 150 (156)
T ss_dssp HHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHH---------HHHHHSSCC----------------
T ss_pred HHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHH---------HHHHHHHcCCCCCccCcCcCccccc
Confidence 999999999999999999999999999999999999999986 6778999999999999999998764
No 86
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.91 E-value=2.4e-24 Score=202.66 Aligned_cols=156 Identities=17% Similarity=0.072 Sum_probs=116.8
Q ss_pred CchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCC-CCCCcHHHHHHHcCCH----HHHHHHHHcCCCCCCCCCCCCcHH
Q 035705 313 GRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYS-KTELRPIHLAARLGSA----KILRRLISAGCNINSRTAAGETAA 387 (758)
Q Consensus 313 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~-~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~L 387 (758)
+.++|+.|+..|+.+.++.+++.+.+. .+ ..|+||||+|+..|+. +++++|+++|+++|.+|..|+|||
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~------~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL 79 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYED------KESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLF 79 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSSC------HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCccc------ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHH
Confidence 468999999999999999999876432 33 6799999999999975 599999999999999999999999
Q ss_pred HHHHHcCC------HHHHHHHHHCCCCCCCcccCCC-CHHHHHHhcccc-cchHHHHHHHHH-cCCCcccCCCCCCcHHH
Q 035705 388 MICARYKH------EECLKFLASEGADLGLINYAGQ-CANSIAKSSRWT-LGFQQAVVDSIR-SGNIIQSSNASRFSPLM 458 (758)
Q Consensus 388 ~~A~~~g~------~~iv~~Ll~~g~~~~~~~~~g~-t~l~~a~~~~~~-~~~~~~~~~ll~-~g~~~~~~~~~~~t~L~ 458 (758)
|+|+..++ .+++++|+++|++++.+|..|. ||||+|+..... .+..+++++|++ .|++++..|..|.||||
T Consensus 80 h~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~ 159 (186)
T 3t8k_A 80 FPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALE 159 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHH
T ss_pred HHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHH
Confidence 99999887 6789999999999999999998 888888653221 233344444444 44444444444444444
Q ss_pred HHHHcCCHHHHHHHHH
Q 035705 459 FVTQANDVDALKKLIE 474 (758)
Q Consensus 459 ~a~~~~~~~~v~~Ll~ 474 (758)
+|++.++.+++++|.+
T Consensus 160 ~A~~~~~~~~v~~L~~ 175 (186)
T 3t8k_A 160 FVKRCQKPIALKMMED 175 (186)
T ss_dssp HHHTTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH
Confidence 4444444444444444
No 87
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.90 E-value=4e-23 Score=181.96 Aligned_cols=125 Identities=38% Similarity=0.561 Sum_probs=83.6
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCC
Q 035705 487 GFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGD 566 (758)
Q Consensus 487 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~ 566 (758)
|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+. .+.+++..+..|.||||+|+..|+
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~ 80 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGH 80 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHH-cCCCCcccCCCCCcHHHHHHHcCh
Confidence 4555555555555555555555555555555555555555555555555544332 234444555566677777777788
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCC
Q 035705 567 FDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAK 612 (758)
Q Consensus 567 ~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad 612 (758)
.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|||
T Consensus 81 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 81 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 8888888888888888888888888888888888888888888875
No 88
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.90 E-value=2.9e-23 Score=185.39 Aligned_cols=125 Identities=26% Similarity=0.384 Sum_probs=69.7
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHc
Q 035705 485 ADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKR 564 (758)
Q Consensus 485 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~ 564 (758)
..+.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+. .+.+++..|..|.||||+|+..
T Consensus 12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~ 90 (136)
T 2jab_A 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLK-NGADVNAVDAIGFTPLHLAAFI 90 (136)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHH
T ss_pred ccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCCHHHHHHHc
Confidence 345566666666666666666666666666665555555444444444444443332 2333344444455555555555
Q ss_pred CCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCC
Q 035705 565 GDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSG 610 (758)
Q Consensus 565 g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g 610 (758)
|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|
T Consensus 91 ~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 91 GHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred CCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 5555555666666666656656666666666666666666665554
No 89
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.89 E-value=8.8e-23 Score=179.74 Aligned_cols=126 Identities=35% Similarity=0.506 Sum_probs=118.5
Q ss_pred CCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC
Q 035705 519 YGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSG 598 (758)
Q Consensus 519 ~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~ 598 (758)
+|+||||+|+..|+.+++++|+.. +.+++..+..|.||||+|+..++.+++++|+++|++++.+|..|+||||+|+..+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 79 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 79 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred CCccHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC
Confidence 489999999999999999988864 6788889999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCc
Q 035705 599 HGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTY 654 (758)
Q Consensus 599 ~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~ 654 (758)
+.+++++|+++|++++.+|..|+||||+|+..++.+ ++++|+++|+|
T Consensus 80 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~---------~~~~Ll~~Gad 126 (126)
T 1n0r_A 80 HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE---------VVKLLLEAGAY 126 (126)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH---------HHHHHHHHTCC
T ss_pred hHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHH---------HHHHHHHcCCC
Confidence 999999999999999999999999999999999986 56677888875
No 90
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.89 E-value=6.2e-23 Score=183.26 Aligned_cols=120 Identities=28% Similarity=0.372 Sum_probs=113.0
Q ss_pred CCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q 035705 517 NKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAK 596 (758)
Q Consensus 517 ~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~ 596 (758)
...+.||||+|+..|+.+++++|+.. +.+++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~ 89 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMAN-GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAF 89 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence 45688999999999999999988765 78889999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHH
Q 035705 597 SGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAE 637 (758)
Q Consensus 597 ~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~ 637 (758)
.|+.+++++|+++|++++.+|..|+||||+|+..++.++++
T Consensus 90 ~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~ 130 (136)
T 2jab_A 90 IGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAE 130 (136)
T ss_dssp HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999999997554
No 91
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.89 E-value=1.7e-23 Score=187.26 Aligned_cols=123 Identities=25% Similarity=0.360 Sum_probs=91.2
Q ss_pred CCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchH
Q 035705 478 VDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYA 557 (758)
Q Consensus 478 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~ 557 (758)
+|+ .+|..|.||||+|+..|+.+++++|++.|++++.++ ..|+||
T Consensus 2 ~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~----------------------------------~~g~t~ 46 (137)
T 3c5r_A 2 IDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKD----------------------------------HAGWTP 46 (137)
T ss_dssp --C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC----------------------------------TTSCCH
T ss_pred CCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCC----------------------------------CCCCCH
Confidence 344 455566666666666666666666666665555444 456666
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhh
Q 035705 558 LHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNE 635 (758)
Q Consensus 558 L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~ 635 (758)
||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|++++.+|..|+||||+|+..+..++
T Consensus 47 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~ 124 (137)
T 3c5r_A 47 LHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSL 124 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHH
Confidence 777777788888888888888888888888888888888888888888888888888888888888888887666553
No 92
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.88 E-value=3.8e-23 Score=185.06 Aligned_cols=134 Identities=23% Similarity=0.244 Sum_probs=112.0
Q ss_pred CCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCc
Q 035705 443 GNIIQSSNASRFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGET 522 (758)
Q Consensus 443 g~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t 522 (758)
|+++ .++..|.||||+|+..|+.+++++|++. |++++.++..|.||||+|+..|+.+++++|+++|++++.++..
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~--- 75 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQN-GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQ--- 75 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGG---
T ss_pred CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCC---
Confidence 4566 6789999999999999999999999998 8999999999999999999999999999999999998777654
Q ss_pred HHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHH
Q 035705 523 AITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSV 602 (758)
Q Consensus 523 ~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~i 602 (758)
|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..+..++
T Consensus 76 -------------------------------g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~ 124 (137)
T 3c5r_A 76 -------------------------------NDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSL 124 (137)
T ss_dssp -------------------------------GCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHH
T ss_pred -------------------------------CCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHH
Confidence 4566777777778888888888899999999999999999988888888
Q ss_pred HHHHHhCCCC
Q 035705 603 CQLLISSGAK 612 (758)
Q Consensus 603 v~~Ll~~gad 612 (758)
+++|.+.+..
T Consensus 125 l~~l~~~~~s 134 (137)
T 3c5r_A 125 LLLPEKNESS 134 (137)
T ss_dssp HSCC------
T ss_pred HhhccccccC
Confidence 8887776543
No 93
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.87 E-value=3.7e-22 Score=174.79 Aligned_cols=109 Identities=25% Similarity=0.237 Sum_probs=76.9
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCC
Q 035705 552 SAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENG 631 (758)
Q Consensus 552 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~ 631 (758)
..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..++.+++++|+++|++++.+|..|+||||+|+..+
T Consensus 5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~ 84 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEG 84 (123)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Confidence 45667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred ChhhHHHHHHHHHHHHHHhCCCccccccccCCCcchHH
Q 035705 632 NGNEAENVILDELALTLVLDGTYVKKHTKCGKGSPHVK 669 (758)
Q Consensus 632 ~~~~~~~ll~~~~~~~L~~~g~~~~~~d~~g~t~l~~a 669 (758)
+.+ ++++|+++|++++.+|..|+||+|+|
T Consensus 85 ~~~---------~v~~Ll~~ga~~~~~~~~g~t~l~~A 113 (123)
T 3aaa_C 85 HVS---------CVKLLLSKGADKTVKGPDGLTAFEAT 113 (123)
T ss_dssp CHH---------HHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred CHH---------HHHHHHHcCCCCCCcCCCCCCHHHHh
Confidence 664 45566667777777777777777765
No 94
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.87 E-value=6.4e-23 Score=200.41 Aligned_cols=138 Identities=21% Similarity=0.205 Sum_probs=107.7
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHH
Q 035705 483 QDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAA 562 (758)
Q Consensus 483 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~ 562 (758)
.+..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+...+.+++..|..|+||||+|+
T Consensus 69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~ 148 (222)
T 3ehr_A 69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAA 148 (222)
T ss_dssp HEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHH
T ss_pred cccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHH
Confidence 35678899999999999999999999999999888888888888888888888887777768888888888889999999
Q ss_pred HcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCC
Q 035705 563 KRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARN 620 (758)
Q Consensus 563 ~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g 620 (758)
..|+.+++++|+++|++++.+|..|+||||+|+..++.++++.|++.|++.+..+.+|
T Consensus 149 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~ 206 (222)
T 3ehr_A 149 WKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED 206 (222)
T ss_dssp HHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred HcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence 9999999999999999999999999999999999999999999999998887776554
No 95
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.87 E-value=1.2e-23 Score=198.59 Aligned_cols=132 Identities=20% Similarity=0.201 Sum_probs=79.2
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCC-CCCchHHHHHHH
Q 035705 485 ADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKG-SAGFYALHRAAK 563 (758)
Q Consensus 485 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~A~~ 563 (758)
..|.||||.|+..|+.+++++|++ |++++.+|..|+||||+|+..|+.+++++|+. .+.+++..+ ..|+||||+|+.
T Consensus 42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~~g~tpL~~A~~ 119 (183)
T 3deo_A 42 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAE-AGADLDHRDMRGGLTALHMAAG 119 (183)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCSSSSCCHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCCCHHHHHHh
Confidence 355667777777777777776666 66666666666666666666666666654443 345555554 556666666666
Q ss_pred cCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhh
Q 035705 564 RGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNE 635 (758)
Q Consensus 564 ~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~ 635 (758)
.|+.+++++|+++|++++.+|..|+||||+|+..++. ..+.+||++|+..|..++
T Consensus 120 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~~~i 174 (183)
T 3deo_A 120 YVRPEVVEALVELGADIEVEDERGLTALELAREILKT-----------------TPKGNPMQFGRRIGLEKV 174 (183)
T ss_dssp TTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-----------------cccccHHHHHHHcCHHHH
Confidence 6666666666666666666666666666666543222 234556666666655543
No 96
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.87 E-value=3.2e-22 Score=203.87 Aligned_cols=139 Identities=19% Similarity=0.077 Sum_probs=105.1
Q ss_pred CcHHHHHHHcCCHHHHHHHHhCCCCCCc------CCCCCCcHHHHHHHc---CChhHHHHHHHhhccccCCCCCCCchHH
Q 035705 488 FSAAMIAAAAGHVEAFRLLLHAGANIKL------QNKYGETAITLAELN---RNGEVLEQVILEYALEEGQKGSAGFYAL 558 (758)
Q Consensus 488 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------~~~~g~t~L~~A~~~---~~~~~v~~ll~~~~~~~~~~~~~g~t~L 558 (758)
.++|+.|+..|+.+.++.|++.|++++. .+..|.||||+|+.. ++.+++++|+.. +.+++..|..|+|||
T Consensus 152 ~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadvn~~d~~G~TpL 230 (301)
T 2b0o_E 152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLDAKAADGNTAL 230 (301)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH-SSCTTCCCTTCCCHH
T ss_pred HHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc-CCCCCCCCCCCCCHH
Confidence 3556666666666666666666666665 466666777777665 666666655544 556666777888889
Q ss_pred HHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCCh
Q 035705 559 HRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNG 633 (758)
Q Consensus 559 ~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~ 633 (758)
|+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|++ .|.||||+|++.|+.
T Consensus 231 h~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 231 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence 999999999999999999999999999999999999999999999999999987 578999999998864
No 97
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.86 E-value=4.2e-22 Score=174.45 Aligned_cols=110 Identities=26% Similarity=0.346 Sum_probs=88.6
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHc
Q 035705 485 ADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKR 564 (758)
Q Consensus 485 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~ 564 (758)
..|.||||+|+..|+.+++++|++.|++++.+ |..|+||||+|+..
T Consensus 5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~----------------------------------~~~g~t~L~~A~~~ 50 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRT----------------------------------LEGGRKPLHYAADC 50 (123)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSC----------------------------------CTTSSCHHHHHHHT
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCcCcc----------------------------------CCCCCcHHHHHHHc
Confidence 34556666666666666666666655555544 44566778888888
Q ss_pred CCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q 035705 565 GDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALAR 628 (758)
Q Consensus 565 g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~ 628 (758)
|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|++++.+|..|+||||+|.
T Consensus 51 ~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~ 114 (123)
T 3aaa_C 51 GQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD 114 (123)
T ss_dssp TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred CCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC
Confidence 8899999999999999999999999999999999999999999999999999999999999994
No 98
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.86 E-value=1.1e-21 Score=199.99 Aligned_cols=139 Identities=23% Similarity=0.150 Sum_probs=120.6
Q ss_pred CCcHHHHHHHcCChhHHHHHHHhhccccCC------CCCCCchHHHHHHHc---CCHHHHHHHHhcCCCCCCCCCCCCcH
Q 035705 520 GETAITLAELNRNGEVLEQVILEYALEEGQ------KGSAGFYALHRAAKR---GDFDLVHTLVSRCYDVNASDADGYTP 590 (758)
Q Consensus 520 g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~------~~~~g~t~L~~A~~~---g~~~~v~~Ll~~ga~~n~~d~~g~tp 590 (758)
..++|+.|+..|+.+.++.|+ ..+.+++. .+..|.||||+|+.. |+.+++++|+++|+++|.+|..|+||
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll-~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~Tp 229 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAF-ANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA 229 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHH-HTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCH
T ss_pred hHHHHhhhhhccCHHHHHHHH-hcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 457899999999999999887 55667776 688999999999997 89999999999999999999999999
Q ss_pred HHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCccccccccCCCcchHHH
Q 035705 591 LMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTKCGKGSPHVKL 670 (758)
Q Consensus 591 L~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~d~~g~t~l~~a~ 670 (758)
||+|+..|+.+++++|+++|+|++.+|..|+||||+|+..++.+ ++++|+++|++ .|.||||+|+
T Consensus 230 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~---------iv~~Ll~~ga~------~g~tpLh~A~ 294 (301)
T 2b0o_E 230 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKE---------CEELLEQAQAG------TFAFPLHVDY 294 (301)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHH---------HHHHHHHHHHH------TTSSCCC---
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHH---------HHHHHHHhcCC------CCCChhHHHH
Confidence 99999999999999999999999999999999999999999997 45566777765 6899999998
Q ss_pred HHHh
Q 035705 671 LKMW 674 (758)
Q Consensus 671 ~~~~ 674 (758)
...+
T Consensus 295 ~~g~ 298 (301)
T 2b0o_E 295 SWVI 298 (301)
T ss_dssp ----
T ss_pred hcCC
Confidence 6543
No 99
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.86 E-value=2.8e-21 Score=191.23 Aligned_cols=139 Identities=23% Similarity=0.256 Sum_probs=117.8
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHH
Q 035705 311 HNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRT-AAGETAAMI 389 (758)
Q Consensus 311 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~ 389 (758)
..|.||||.|+..|+.+++++|++ |++++. .+..|.||||+|+..|+.+++++|+++|++++.++ ..|.||||+
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~----~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~ 117 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE-DRDVDA----VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM 117 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTC----BCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCC----cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHH
Confidence 468899999999999999999999 888776 78899999999999999999999999999999998 789999999
Q ss_pred HHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHHH
Q 035705 390 CARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDAL 469 (758)
Q Consensus 390 A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~v 469 (758)
|+..|+.+++++|+++|++++.+|..|.||+|+|+... ....+.|||++|+..|+.+++
T Consensus 118 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~---------------------~~~~~~~~l~~a~~~g~~~iv 176 (244)
T 3ui2_A 118 AAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL---------------------KTTPKGNPMQFGRRIGLEKVI 176 (244)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHH---------------------TTCCCSSHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHH---------------------hccCCCCHHHHHHHcChHHHH
Confidence 99999999999999999999999999998888885321 113344566666666666666
Q ss_pred HHHHHh
Q 035705 470 KKLIEW 475 (758)
Q Consensus 470 ~~Ll~~ 475 (758)
++|++.
T Consensus 177 ~~L~~~ 182 (244)
T 3ui2_A 177 NVLEGQ 182 (244)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 655554
No 100
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.85 E-value=2.8e-21 Score=182.29 Aligned_cols=139 Identities=23% Similarity=0.267 Sum_probs=118.8
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHH
Q 035705 310 LHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRT-AAGETAAM 388 (758)
Q Consensus 310 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~ 388 (758)
+..|.||||.|+..|+.+++++|++ |++++. .+..|.||||+|+..|+.+++++|+++|++++.++ ..|.||||
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~----~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~ 115 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDVDA----VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALH 115 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTC----CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCC----cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHH
Confidence 3468899999999999999999999 888776 78899999999999999999999999999999998 88999999
Q ss_pred HHHHcCCHHHHHHHHHCCCCCCCcccCCCCHHHHHHhcccccchHHHHHHHHHcCCCcccCCCCCCcHHHHHHHcCCHHH
Q 035705 389 ICARYKHEECLKFLASEGADLGLINYAGQCANSIAKSSRWTLGFQQAVVDSIRSGNIIQSSNASRFSPLMFVTQANDVDA 468 (758)
Q Consensus 389 ~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~ 468 (758)
+|+..|+.+++++|+++|++++.+|..|.||+|+|+... ....+.++|++|+..|..++
T Consensus 116 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~---------------------~~~~~~~~l~~a~~~~~~~i 174 (183)
T 3deo_A 116 MAAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL---------------------KTTPKGNPMQFGRRIGLEKV 174 (183)
T ss_dssp HHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHH---------------------HTCCCCSHHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhc---------------------cCcccccHHHHHHHcCHHHH
Confidence 999999999999999999999999999999888885421 01233456666666666666
Q ss_pred HHHHHH
Q 035705 469 LKKLIE 474 (758)
Q Consensus 469 v~~Ll~ 474 (758)
+++|.+
T Consensus 175 ~~~L~~ 180 (183)
T 3deo_A 175 INVLEG 180 (183)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 666654
No 101
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.85 E-value=5.6e-22 Score=193.70 Aligned_cols=139 Identities=22% Similarity=0.183 Sum_probs=113.6
Q ss_pred CCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHH
Q 035705 516 QNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSR-CYDVNASDADGYTPLMLA 594 (758)
Q Consensus 516 ~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~n~~d~~g~tpL~~A 594 (758)
.+..|.||||+|+..|+.++++.|+. .+.+++..|..|+||||+|+..|+.+++++|+++ |+++|.+|..|+||||+|
T Consensus 69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A 147 (222)
T 3ehr_A 69 QAESIDNPLHEAAKRGNLSWLRECLD-NRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAA 147 (222)
T ss_dssp HEEEESCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHH
T ss_pred cccccccccccccccCcHHHHHHHHh-CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHH
Confidence 46678999999999999999998876 6788999999999999999999999999999999 999999999999999999
Q ss_pred HHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCccccccccCCC
Q 035705 595 AKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTKCGKG 664 (758)
Q Consensus 595 ~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~d~~g~t 664 (758)
+..|+.+++++|+++|++++.+|..|+||||+|+..+..+ +++.|+..|++.+..+..|+.
T Consensus 148 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~---------~l~~l~~~~~~~~~~~~~~~l 208 (222)
T 3ehr_A 148 AWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACAS---------LLKKKQGTDAVRTLSNAEDYL 208 (222)
T ss_dssp HHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHH---------HHC------------------
T ss_pred HHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHH---------HHHHHhccchhhhccchhhhc
Confidence 9999999999999999999999999999999999887775 566778888888777766543
No 102
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.85 E-value=5.6e-21 Score=192.35 Aligned_cols=192 Identities=15% Similarity=0.073 Sum_probs=132.3
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcc-cCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCcCCCCCCcHHHH
Q 035705 449 SNASRFSPLMFVTQANDVDALKKLIEWADVDLDE-QDADGFSAAMIAAAAGHVEAFRLLLHA-GANIKLQNKYGETAITL 526 (758)
Q Consensus 449 ~~~~~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~ 526 (758)
.|..+.++++.+...|+..+.+++..... .... +...+....+ ....-..+++... ............++|+.
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~-~~~~~kP~~~s~~~~----~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~ 136 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLP-SEDPVKPNPGSDMIA----RKDYITAKYMERRYARKKHADTAAKLHSLCE 136 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCC-SSSCCSCCTTCCHHH----HHHHHHHHHTTCTTSCCCSSSHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCC-hhhcCCCCCCCCHHH----HHHHHHHHHHHhhcccccccccchhhhhhhh
Confidence 45666778888888777766655433211 1110 0011111111 1111112232221 11111122223467788
Q ss_pred HHHcCChhHHHHHHHhhccc-----cCCCCCCCchHHHHHHHc---CCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC
Q 035705 527 AELNRNGEVLEQVILEYALE-----EGQKGSAGFYALHRAAKR---GDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSG 598 (758)
Q Consensus 527 A~~~~~~~~v~~ll~~~~~~-----~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~ 598 (758)
|+..|+.+.+..++...... ++..+..|+||||+|+.. |+.+++++|+++|+++|.+|..|+||||+|+..|
T Consensus 137 a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g 216 (278)
T 1dcq_A 137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTD 216 (278)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTT
T ss_pred HhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcC
Confidence 88888888777666543321 344578899999999999 8999999999999999999999999999999999
Q ss_pred cHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCc
Q 035705 599 HGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTY 654 (758)
Q Consensus 599 ~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~ 654 (758)
+.+++++|+++|+|++.+|..|+||||+|+..|+.+ ++++|+++|++
T Consensus 217 ~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~---------~v~~Ll~~ga~ 263 (278)
T 1dcq_A 217 NAECLKLLLRGKASIEIANESGETPLDIAKRLKHEH---------CEELLTQALSG 263 (278)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH---------HHHHHHHHHTT
T ss_pred CHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHH---------HHHHHHHcCCC
Confidence 999999999999999999999999999999999987 55577777764
No 103
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.85 E-value=2e-21 Score=192.32 Aligned_cols=136 Identities=28% Similarity=0.351 Sum_probs=84.0
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCC
Q 035705 453 RFSPLMFVTQANDVDALKKLIEWADVDLDEQDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRN 532 (758)
Q Consensus 453 ~~t~L~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 532 (758)
|.||||.|+..|+.+++++|++ +++++.+|..|.||||+|+..|+.++|++|+++|++++.++.
T Consensus 45 g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~-------------- 108 (244)
T 3ui2_A 45 YETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDM-------------- 108 (244)
T ss_dssp HHHHHHHHHTTTCHHHHHHTTT--TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCS--------------
T ss_pred CCCHHHHHHHcCCHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCC--------------
Confidence 4455555566666666655555 455555555556666666665666666666555555555441
Q ss_pred hhHHHHHHHhhccccCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCC
Q 035705 533 GEVLEQVILEYALEEGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAK 612 (758)
Q Consensus 533 ~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad 612 (758)
..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.
T Consensus 109 -------------------~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~------------ 157 (244)
T 3ui2_A 109 -------------------RGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT------------ 157 (244)
T ss_dssp -------------------SSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTT------------
T ss_pred -------------------CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhc------------
Confidence 3456666666666777777777777777777777777777777652221
Q ss_pred CCCCCCCCCcHHHHHHHCCChhhHHHHH
Q 035705 613 CDIENARNETALALARENGNGNEAENVI 640 (758)
Q Consensus 613 ~~~~d~~g~t~L~~A~~~~~~~~~~~ll 640 (758)
..+.||||+|+..|+.++++.|+
T Consensus 158 -----~~~~~~l~~a~~~g~~~iv~~L~ 180 (244)
T 3ui2_A 158 -----TPKGNPMQFGRRIGLEKVINVLE 180 (244)
T ss_dssp -----CCCSSHHHHHHHHHHHHHHHHHH
T ss_pred -----cCCCCHHHHHHHcChHHHHHHHH
Confidence 34567777777777777666554
No 104
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.84 E-value=9.4e-21 Score=156.45 Aligned_cols=93 Identities=39% Similarity=0.582 Sum_probs=85.3
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCC
Q 035705 553 AGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGN 632 (758)
Q Consensus 553 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~ 632 (758)
+|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..++.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~ 80 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhCCCc
Q 035705 633 GNEAENVILDELALTLVLDGTY 654 (758)
Q Consensus 633 ~~~~~~ll~~~~~~~L~~~g~~ 654 (758)
.+ ++++|+++|++
T Consensus 81 ~~---------~~~~Ll~~ga~ 93 (93)
T 1n0q_A 81 LE---------VVKLLLEAGAY 93 (93)
T ss_dssp HH---------HHHHHHHTTCC
T ss_pred HH---------HHHHHHHcCCC
Confidence 86 56677888875
No 105
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.83 E-value=1e-19 Score=183.10 Aligned_cols=124 Identities=16% Similarity=0.173 Sum_probs=88.5
Q ss_pred cHHHHHHHcCCHHHHHHHHhCCCCCC------cCCCCCCcHHHHHHHc---CChhHHHHHHHhhccccCCCCCCCchHHH
Q 035705 489 SAAMIAAAAGHVEAFRLLLHAGANIK------LQNKYGETAITLAELN---RNGEVLEQVILEYALEEGQKGSAGFYALH 559 (758)
Q Consensus 489 t~L~~A~~~g~~~~v~~Ll~~g~~~~------~~~~~g~t~L~~A~~~---~~~~~v~~ll~~~~~~~~~~~~~g~t~L~ 559 (758)
++|+.|+..|+.+.++.+++.|++++ ..+..|.||||+|+.. |+.+++++|+.. +.+++..|..|+||||
T Consensus 132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~-ga~in~~d~~g~TpLh 210 (278)
T 1dcq_A 132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTGKGSTALH 210 (278)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCCCTTCCCHHH
T ss_pred hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC-CCCccccCCCCCCHHH
Confidence 34555555555555555555555522 2244555555555555 455555544332 4555556667778888
Q ss_pred HHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCC
Q 035705 560 RAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKC 613 (758)
Q Consensus 560 ~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~ 613 (758)
+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++.
T Consensus 211 ~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 211 YCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 888899999999999999999999999999999999999999999999999863
No 106
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.83 E-value=9.7e-21 Score=163.50 Aligned_cols=109 Identities=34% Similarity=0.453 Sum_probs=100.8
Q ss_pred CCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q 035705 549 QKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALAR 628 (758)
Q Consensus 549 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~ 628 (758)
..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|++++.+|..|+||||+|+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~ 83 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK 83 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCChhhHHHHHHHHHHHHHHhCCCccccccccCCCcc
Q 035705 629 ENGNGNEAENVILDELALTLVLDGTYVKKHTKCGKGSP 666 (758)
Q Consensus 629 ~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~d~~g~t~l 666 (758)
..++.+ ++++|+++|++++.++..|.||-
T Consensus 84 ~~~~~~---------~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 84 KNGHHE---------IVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp TTTCHH---------HHHHHHTTSSSHHHHSCCCC---
T ss_pred HCCCHH---------HHHHHHHcCCCCCcCCccccccc
Confidence 999886 66789999999999999999974
No 107
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.83 E-value=2.1e-20 Score=194.53 Aligned_cols=147 Identities=22% Similarity=0.223 Sum_probs=105.4
Q ss_pred CCCCcHHHHHHHc-CCHHHHHHHHhCCCCCCcCC--CCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHH
Q 035705 485 ADGFSAAMIAAAA-GHVEAFRLLLHAGANIKLQN--KYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRA 561 (758)
Q Consensus 485 ~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~~--~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A 561 (758)
..+.|+||.|+.. ++.++++.|+++|++++..+ ..|.||||+|+..|+.+++++|+. .+.+++..|..|+||||+|
T Consensus 197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~-~Gadvn~~d~~G~TpLh~A 275 (368)
T 3jue_A 197 LHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQ-NGANVNQADSAGRGPLHHA 275 (368)
T ss_dssp CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHH
T ss_pred CCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHH
Confidence 3455778888877 88888888888888887776 677788888888888877776554 4677777788888999999
Q ss_pred HHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCC---CCCCCCCCCCCcHHHHHHHCCC
Q 035705 562 AKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSG---AKCDIENARNETALALARENGN 632 (758)
Q Consensus 562 ~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g---ad~~~~d~~g~t~L~~A~~~~~ 632 (758)
+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|++.| ++....+..+.|+++++.....
T Consensus 276 ~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~~ 349 (368)
T 3jue_A 276 TILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSL 349 (368)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC------------------------
T ss_pred HHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999876 4445566788899988876543
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.82 E-value=7.1e-20 Score=200.99 Aligned_cols=134 Identities=19% Similarity=0.107 Sum_probs=84.7
Q ss_pred cHHHHHHHcCCHHHHHHHHhCCCCCCcC------CCCCCcHHHHHHH---cCChhHHHHHHHhhccccCCCCCCCchHHH
Q 035705 489 SAAMIAAAAGHVEAFRLLLHAGANIKLQ------NKYGETAITLAEL---NRNGEVLEQVILEYALEEGQKGSAGFYALH 559 (758)
Q Consensus 489 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~------~~~g~t~L~~A~~---~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~ 559 (758)
+.||.|+..|+.++|+.|++.|++++.. +..|.||||+|+. .|+.+++++|+. .+.+++..|..|+||||
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~-~ga~vn~~d~~g~TpLh 212 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ-NGGHLDAKAADGNTALH 212 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHH-HSCCTTCCCSSSCCHHH
T ss_pred HHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHH-cCCCCCccCCCCCcHHH
Confidence 3455555555555555555555555544 4455555555543 555555554433 34455555666777788
Q ss_pred HHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Q 035705 560 RAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARE 629 (758)
Q Consensus 560 ~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~ 629 (758)
+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++. ||+|.+..
T Consensus 213 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~------~~~h~~~~ 276 (497)
T 3lvq_E 213 YAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFA------FPLHVDYS 276 (497)
T ss_dssp HHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC------------------
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC------Ccceeecc
Confidence 88888888888888999999999998999999999999999999999999988876 45555543
No 109
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.81 E-value=1.8e-19 Score=148.73 Aligned_cols=93 Identities=35% Similarity=0.522 Sum_probs=87.2
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 035705 312 NGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAMICA 391 (758)
Q Consensus 312 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 391 (758)
+|+||||+|+..|+.+++++|++.|++++. ++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~----~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~ 76 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNA----KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 76 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTC----CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcc----cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence 478999999999999999999999999876 7889999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHCCCC
Q 035705 392 RYKHEECLKFLASEGAD 408 (758)
Q Consensus 392 ~~g~~~iv~~Ll~~g~~ 408 (758)
..|+.+++++|+++|++
T Consensus 77 ~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 77 RNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp HTTCHHHHHHHHHTTCC
T ss_pred HcCCHHHHHHHHHcCCC
Confidence 99999999999999875
No 110
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.81 E-value=1.1e-19 Score=189.13 Aligned_cols=147 Identities=14% Similarity=0.124 Sum_probs=114.8
Q ss_pred CCCCCCcHHHHHHHc-CChhHHHHHHHhhccccCCCC--CCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHH
Q 035705 516 QNKYGETAITLAELN-RNGEVLEQVILEYALEEGQKG--SAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLM 592 (758)
Q Consensus 516 ~~~~g~t~L~~A~~~-~~~~~v~~ll~~~~~~~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~ 592 (758)
....+.|+||.|+.. ++.++++.|+ ..+.+++..+ ..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||
T Consensus 195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL-~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh 273 (368)
T 3jue_A 195 GSLHPGALLFRASGHPPSLPTMADAL-AHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLH 273 (368)
T ss_dssp --CCHHHHHHHHTSSSCCHHHHHHHH-HTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred ccCCCCcHHHHHHHccCCHHHHHHHH-HcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence 344577999999999 9999999877 5678888887 89999999999999999999999999999999999999999
Q ss_pred HHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCccccccccCCCcchHH
Q 035705 593 LAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTKCGKGSPHVK 669 (758)
Q Consensus 593 ~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~d~~g~t~l~~a 669 (758)
+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+.. ...+++....+..+.|++++.
T Consensus 274 ~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~------~~~~~~~~~~~~~~~t~l~i~ 344 (368)
T 3jue_A 274 HATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLA------KMREAEAAQGQAGDETYLDIF 344 (368)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH------HC-------------------
T ss_pred HHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHc------CCCcccccccCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999876654422 123455566677788887764
No 111
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.81 E-value=1.3e-19 Score=198.88 Aligned_cols=131 Identities=23% Similarity=0.179 Sum_probs=114.9
Q ss_pred CCcHHHHHHHcCChhHHHHHHHhhccccCCC------CCCCchHHHHHHH---cCCHHHHHHHHhcCCCCCCCCCCCCcH
Q 035705 520 GETAITLAELNRNGEVLEQVILEYALEEGQK------GSAGFYALHRAAK---RGDFDLVHTLVSRCYDVNASDADGYTP 590 (758)
Q Consensus 520 g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~------~~~g~t~L~~A~~---~g~~~~v~~Ll~~ga~~n~~d~~g~tp 590 (758)
..+.||.|+..|+.+.++.|+.. +.+++.. +..|.||||+|+. .|+.+++++|+++|+++|.+|..|+||
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~-g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~Tp 210 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFAN-GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA 210 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHT-TCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCH
T ss_pred cHHHHHHHHhccCHHHHHHHHhh-cccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcH
Confidence 34789999999999999988765 4677766 8899999999966 899999999999999999999999999
Q ss_pred HHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHCCChhhHHHHHHHHHHHHHHhCCCccccccc
Q 035705 591 LMLAAKSGHGSVCQLLISSGAKCDIENARNETALALARENGNGNEAENVILDELALTLVLDGTYVKKHTK 660 (758)
Q Consensus 591 L~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~A~~~~~~~~~~~ll~~~~~~~L~~~g~~~~~~d~ 660 (758)
||+|+..|+.+++++|+++|||++.+|..|+||||+|+..|+.+ ++++|+++|++++....
T Consensus 211 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~---------~~~~Ll~~ga~~~~~~~ 271 (497)
T 3lvq_E 211 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKE---------CEELLEQAQAGTFAFPL 271 (497)
T ss_dssp HHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHH---------HHHHHHHTCC-------
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHH---------HHHHHHHhCCCCCCCcc
Confidence 99999999999999999999999999999999999999999986 66789999999988433
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.78 E-value=2.5e-19 Score=154.60 Aligned_cols=108 Identities=35% Similarity=0.480 Sum_probs=85.9
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCcHHHHHHHcCChhHHHHHHHhhccccCCCCCCCchHHHHHH
Q 035705 483 QDADGFSAAMIAAAAGHVEAFRLLLHAGANIKLQNKYGETAITLAELNRNGEVLEQVILEYALEEGQKGSAGFYALHRAA 562 (758)
Q Consensus 483 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~ 562 (758)
+|.+|.||||+|+..|+.+++++|+++|++++..|. .|.||||+|+
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~----------------------------------~g~t~L~~A~ 50 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSK----------------------------------DGNTPLHLAA 50 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCS----------------------------------SSCCTTHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC----------------------------------CCCCHHHHHH
Confidence 456667777777777777777777766666655554 5556677778
Q ss_pred HcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHH
Q 035705 563 KRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETAL 624 (758)
Q Consensus 563 ~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L 624 (758)
..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|+|+|.++..|.||-
T Consensus 51 ~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 51 KNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp TTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred HcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 88888999999999999999999999999999999999999999999999999999998873
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.74 E-value=8.2e-18 Score=143.43 Aligned_cols=92 Identities=37% Similarity=0.459 Sum_probs=84.0
Q ss_pred cCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCCcHHHH
Q 035705 547 EGQKGSAGFYALHRAAKRGDFDLVHTLVSRCYDVNASDADGYTPLMLAAKSGHGSVCQLLISSGAKCDIENARNETALAL 626 (758)
Q Consensus 547 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~d~~g~t~L~~ 626 (758)
....+.+|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~ 96 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI 96 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCChhhHHH
Q 035705 627 ARENGNGNEAEN 638 (758)
Q Consensus 627 A~~~~~~~~~~~ 638 (758)
|+..++.+++++
T Consensus 97 A~~~~~~~~~~~ 108 (110)
T 2zgd_A 97 SIDNGNEDLAEI 108 (110)
T ss_dssp HHHHTCHHHHHH
T ss_pred HHHcCCHHHHHH
Confidence 999999986653
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.66 E-value=3.5e-16 Score=133.27 Aligned_cols=90 Identities=23% Similarity=0.316 Sum_probs=84.4
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHHccCCCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 035705 309 ILHNGRTLIHHAILCNNARAVELLLNCAVDKEFPVQTYSKTELRPIHLAARLGSAKILRRLISAGCNINSRTAAGETAAM 388 (758)
Q Consensus 309 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 388 (758)
.+.+|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus 20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~----~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~ 95 (110)
T 2zgd_A 20 MGSDLGKKLLEAARAGQDDEVRILMANGADVAA----KDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFD 95 (110)
T ss_dssp --CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTC----CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred cCCccchHHHHHHHcCCHHHHHHHHHcCCCCCc----cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHH
Confidence 477899999999999999999999999998876 6889999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHH
Q 035705 389 ICARYKHEECLKFL 402 (758)
Q Consensus 389 ~A~~~g~~~iv~~L 402 (758)
+|+..|+.+++++|
T Consensus 96 ~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 96 ISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHTCHHHHHHH
T ss_pred HHHHcCCHHHHHHh
Confidence 99999999999987
No 115
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=65.82 E-value=11 Score=40.15 Aligned_cols=46 Identities=15% Similarity=0.118 Sum_probs=29.9
Q ss_pred HHHHHHHhCCCCCCcchhhhhhccccccccCCCCchhHHHHhcCCHHHHHHHHH----cCCCCcc
Q 035705 194 NVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLLLQ----AGVKMDI 254 (758)
Q Consensus 194 ~iv~~Ll~~g~d~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~Ll~----~ga~~~~ 254 (758)
++++.+.+.|..+|... ..+.+...++.|+.+-+..+++ .|..++.
T Consensus 91 ~lf~~M~~~G~~Pd~~t---------------yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~ 140 (501)
T 4g26_A 91 DIFKQMIVDKVVPNEAT---------------FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRL 140 (501)
T ss_dssp HHHHHHHHTTCCCCHHH---------------HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHhCCCCCHHH---------------HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc
Confidence 56777778888887665 2345666678888766555543 4665554
No 116
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=60.78 E-value=28 Score=30.79 Aligned_cols=138 Identities=14% Similarity=0.085 Sum_probs=86.0
Q ss_pred ccchhHHHHHHHHHcCCHHHHHhhhcCCCCCcccccceeeccccceeeecccccchhhhhhhcccCCchHH-HHHHHcCc
Q 035705 23 YEAEVSQRLVDAAHVNDVKRANECIGDPFVDVNFVGTVSLRAKKTELVLHDEAAHEVRVVYEEFKTEVTAL-FLAAHAGN 101 (758)
Q Consensus 23 ~~~~~~~~L~~A~~~G~~~~v~~LL~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L-~~A~~~g~ 101 (758)
+..+..+.|-.|+..||++....+.+... ++.-|.-| ..|...|+
T Consensus 4 ~~~D~~~rF~LAL~lg~l~~A~e~a~~l~----------------------------------~~~~Wk~Lg~~AL~~gn 49 (177)
T 3mkq_B 4 FVQDPHIRFDLALEYGNLDAALDEAKKLN----------------------------------DSITWERLIQEALAQGN 49 (177)
T ss_dssp TSSCHHHHHHHHHHTTCHHHHHHHHHHHC----------------------------------CHHHHHHHHHHHHHTTC
T ss_pred ccCChHHHHHHHHhcCCHHHHHHHHHHhC----------------------------------CHHHHHHHHHHHHHcCC
Confidence 34456788999999999999988876531 12334444 36778999
Q ss_pred HHHHHHHHhCCCCCCcccccCcchhHHhhhChHHHHHHHHhcCCCccccchHHHHHHHcCChh-HHHHHHhccCCCCCCC
Q 035705 102 LTLVRKLLSLGANVNQKLFRGYATTAAVREDHLEILDLLIKAGACQEACEEALLETSYLGQAR-PAELLMATDLIRPQVS 180 (758)
Q Consensus 102 ~~iv~~Ll~~ga~~~~~~~~g~~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~l~~A~~~g~~~-iv~~Ll~~~~~~~~~~ 180 (758)
.++++.-..+--|+. .-+.+....|+.+-++.|.+--..-..-..+++.+...|..+ .+++|.+.+..
T Consensus 50 ~~lAe~cy~~~~D~~------~L~~Ly~~tg~~e~L~kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~----- 118 (177)
T 3mkq_B 50 ASLAEMIYQTQHSFD------KLSFLYLVTGDVNKLSKMQNIAQTREDFGSMLLNTFYNNSTKERSSIFAEGGSL----- 118 (177)
T ss_dssp HHHHHHHHHHTTCHH------HHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCH-----
T ss_pred hHHHHHHHHHhCCHH------HHHHHHHHhCCHHHHHHHHHHHHHCccHHHHHHHHHHcCCHHHHHHHHHHCCCh-----
Confidence 999988877643332 122455556666665555332111111234567777777765 66777654321
Q ss_pred chHHHHHHhcCCHHHHHHHHhC-CCC
Q 035705 181 VHALVSACFRGFVNVVDTLIKC-GVD 205 (758)
Q Consensus 181 ~t~L~~A~~~g~~~iv~~Ll~~-g~d 205 (758)
.-+...|-.+|..++.+.+++. |.+
T Consensus 119 ~eA~~~A~t~g~~~~a~~~~~~~~~~ 144 (177)
T 3mkq_B 119 PLAYAVAKANGDEAAASAFLEQAEVD 144 (177)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHhCCc
Confidence 2356677789999999988863 443
No 117
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=56.62 E-value=37 Score=36.09 Aligned_cols=55 Identities=11% Similarity=0.031 Sum_probs=30.1
Q ss_pred HHHHhcCCHHHH----HHHHhCCCCCCcchhhhhhccccccccCCCCchhHHHHhcCCHHHHHHH----HHcCCCCcc
Q 035705 185 VSACFRGFVNVV----DTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLL----LQAGVKMDI 254 (758)
Q Consensus 185 ~~A~~~g~~~iv----~~Ll~~g~d~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~L----l~~ga~~~~ 254 (758)
...+..|+.+-+ +.+.+.|..++... ..+.+...++.|..+-+..+ .+.|..++.
T Consensus 113 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t---------------yn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~ 175 (501)
T 4g26_A 113 RLAVAKDDPEMAFDMVKQMKAFGIQPRLRS---------------YGPALFGFCRKGDADKAYEVDAHMVESEVVPEE 175 (501)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTCCCCHHH---------------HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCccce---------------ehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCH
Confidence 344555664443 34445677776654 23445555777776555444 445666654
No 118
>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1
Probab=42.93 E-value=16 Score=30.63 Aligned_cols=39 Identities=21% Similarity=0.499 Sum_probs=29.5
Q ss_pred CCceEEEEeecC-ceEEEeecCCchhhHHHhhhhhhhhhhh
Q 035705 707 EPGMFHVVTTQN-KEVHFVCQGGLEMADLWVRGIRLVTGQA 746 (758)
Q Consensus 707 ~~~~~~~~~~~~-~~~~~~~~~g~~~~~~w~~~~~~~~~~~ 746 (758)
+..-|.++-.+. +.+++.|....+ +..|+.||+.++...
T Consensus 84 ~~~~FsIiy~~~~k~LdlvA~s~~e-~~~Wv~gL~~L~~~~ 123 (131)
T 1mai_A 84 EDRCFSIVFKDQRNTLDLIAPSPAD-AQHWVQGLRKIIHHS 123 (131)
T ss_dssp GGGEEEEEESSSCCCEEEECSSHHH-HHHHHHHHHHHHC--
T ss_pred ccceEEEEECCCCceEEEEeCCHHH-HHHHHHHHHHHHHhh
Confidence 444566666554 699999999998 899999999886543
No 119
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}
Probab=42.76 E-value=22 Score=29.38 Aligned_cols=40 Identities=28% Similarity=0.331 Sum_probs=31.6
Q ss_pred CCCceEEEEeecCceEEEeecCCchhhHHHhhhhhhhhhhh
Q 035705 706 EEPGMFHVVTTQNKEVHFVCQGGLEMADLWVRGIRLVTGQA 746 (758)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~~ 746 (758)
..+..|.++...++.++|.|+...+ ...|++.|+-.+..+
T Consensus 87 ~~~~~F~I~t~~~r~~~l~A~s~~e-~~~Wi~ai~~~i~~~ 126 (128)
T 2rlo_A 87 EENFEFLIVSSTGQTWHFEAASFEE-RDAWVQAIESQILAS 126 (128)
T ss_dssp CCCCCEEEECTTSCEEEEEESSHHH-HHHHHHHHHHHHHHH
T ss_pred cCCceEEEEcCCCCEEEEEcCCHHH-HHHHHHHHHHHHHHH
Confidence 3455677777777899999999988 799999999776543
No 120
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1
Probab=42.52 E-value=24 Score=28.85 Aligned_cols=38 Identities=11% Similarity=0.237 Sum_probs=32.0
Q ss_pred CCCceEEEEeecCceEEEeecCCchhhHHHhhhhhhhhh
Q 035705 706 EEPGMFHVVTTQNKEVHFVCQGGLEMADLWVRGIRLVTG 744 (758)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~ 744 (758)
..+..|++....++...|.|.+..+ ...|++.|+....
T Consensus 82 kr~~~F~l~t~~~~~~lfqA~s~~e-~~~Wi~ai~~~i~ 119 (122)
T 1dro_A 82 KKKHVLRVKLANGALFLLQAHDDTE-MSQWVTSLKAQSD 119 (122)
T ss_dssp SSTTEEEEECSSSCEEEEECSSSHH-HHHHHHHHHHHHT
T ss_pred CCCeEEEEEEcCCCEEEEECCCHHH-HHHHHHHHHHHHH
Confidence 3467888887788899999999998 7999999997754
No 121
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Probab=40.83 E-value=26 Score=29.14 Aligned_cols=38 Identities=21% Similarity=0.362 Sum_probs=31.7
Q ss_pred CCceEEEEeecCceEEEeecCCchhhHHHhhhhhhhhhh
Q 035705 707 EPGMFHVVTTQNKEVHFVCQGGLEMADLWVRGIRLVTGQ 745 (758)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~ 745 (758)
.+..|.+....++..+|.|....+ ...|++.|+-...+
T Consensus 88 r~~~F~l~t~~~~~yl~qA~s~~e-~~~Wi~aI~~~i~~ 125 (129)
T 2p0d_A 88 RRNVLHIRTIPGHEFLLQSDHETE-LRAWHRALRTVIER 125 (129)
T ss_dssp SSSEEEEECTTSCEEEEECSCHHH-HHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCEEEEECCCHHH-HHHHHHHHHHHHHh
Confidence 457888888788899999999998 69999999977553
No 122
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Probab=38.50 E-value=22 Score=29.29 Aligned_cols=37 Identities=8% Similarity=0.118 Sum_probs=31.4
Q ss_pred CCceEEEEeecCceEEEeecCCchhhHHHhhhhhhhhh
Q 035705 707 EPGMFHVVTTQNKEVHFVCQGGLEMADLWVRGIRLVTG 744 (758)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~ 744 (758)
.+..|++....+....|.+.+..+ ...|++.|+-.++
T Consensus 87 rk~vF~l~t~~~~~ylfqA~s~~e-~~~Wi~aI~~aI~ 123 (124)
T 3pp2_A 87 RKNVLELRSRDGSEYLIQHDSEAI-ISTWHKAIAQGIQ 123 (124)
T ss_dssp SSSEEEEECTTSCEEEEECSCHHH-HHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCEEEEECCCHHH-HHHHHHHHHHHHh
Confidence 467899888888899999999998 6999999997654
No 123
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=38.37 E-value=30 Score=28.28 Aligned_cols=39 Identities=18% Similarity=0.306 Sum_probs=32.2
Q ss_pred CCCCceEEEEeecCceEEEeecCCchhhHHHhhhhhhhhh
Q 035705 705 VEEPGMFHVVTTQNKEVHFVCQGGLEMADLWVRGIRLVTG 744 (758)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~ 744 (758)
...+..|.+....++...|.|....+ ...|+..|+-...
T Consensus 79 ~~r~~~F~i~~~~~~~~~f~A~s~~e-~~~Wi~ai~~~~~ 117 (123)
T 1wjm_A 79 RKRKHVFKLGLQDGKEYLFQAKDEAE-MSSWLRVVNAAIA 117 (123)
T ss_dssp SSCSSEEEEECSSSCEEEEECSSHHH-HHHHHHHHHHHHH
T ss_pred cCCCCEEEEEEcCCcEEEEECCCHHH-HHHHHHHHHHHHh
Confidence 34567888888888899999999988 7999999997654
No 124
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=36.72 E-value=21 Score=28.12 Aligned_cols=38 Identities=18% Similarity=0.380 Sum_probs=30.5
Q ss_pred CCceEEEEeecCceEEEeecCCchhhHHHhhhhhhhhhh
Q 035705 707 EPGMFHVVTTQNKEVHFVCQGGLEMADLWVRGIRLVTGQ 745 (758)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~ 745 (758)
.+..|.+....++.++|.|....+ ...|+..|+..+++
T Consensus 69 ~~~~F~i~~~~~r~~~l~a~s~~e-~~~Wi~ai~~~i~~ 106 (108)
T 1u5d_A 69 KESCFELTSQDRRTYEFTATSPAE-ARDWVDQISFLLKD 106 (108)
T ss_dssp GGGEEEEECSSSCCEEEECSSHHH-HHHHHHHHHHHHHH
T ss_pred CcceEEEEcCCCcEEEEECCCHHH-HHHHHHHHHHHHHh
Confidence 346777777666889999988888 79999999988654
No 125
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A
Probab=34.49 E-value=31 Score=27.04 Aligned_cols=34 Identities=18% Similarity=0.401 Sum_probs=28.3
Q ss_pred CCceEEEEeecCceEEEeecCCchhhHHHhhhhhh
Q 035705 707 EPGMFHVVTTQNKEVHFVCQGGLEMADLWVRGIRL 741 (758)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~w~~~~~~ 741 (758)
.+..|.+....++.++|.|+...+ ...|+..|+-
T Consensus 72 ~~~~F~i~~~~~~~~~~~A~s~~e-~~~Wi~ai~~ 105 (106)
T 1btn_A 72 KKHVFKLRLSDGNEYLFQAKDDEE-MNTWIQAISS 105 (106)
T ss_dssp SSSEEEEECTTSCEEEEECSSHHH-HHHHHHHHHH
T ss_pred CccEEEEEecCCCEEEEECCCHHH-HHHHHHHHhc
Confidence 456788887777899999999988 7999999874
No 126
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=34.49 E-value=33 Score=27.54 Aligned_cols=42 Identities=12% Similarity=0.360 Sum_probs=33.4
Q ss_pred CCCCceEEEEeecCceEEEeecCCchhhHHHhhhhhhhhhhhh
Q 035705 705 VEEPGMFHVVTTQNKEVHFVCQGGLEMADLWVRGIRLVTGQAI 747 (758)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~~~ 747 (758)
...+..|.+....+....|.+.+..+ +..|++.|+-...+.+
T Consensus 63 ~~r~~~F~l~~~~~~~y~f~A~s~ee-~~~Wi~ai~~~~~~~~ 104 (112)
T 3cxb_B 63 TDRPHAFQVILSDRPCLELSAESEAE-MAEWMQHLCQAVSKGV 104 (112)
T ss_dssp SSCTTEEEEEETTSCCEEEECSSHHH-HHHHHHHHHHHHTCC-
T ss_pred CCCCeEEEEEcCCCCEEEEEcCCHHH-HHHHHHHHHHHhhccc
Confidence 44567899887888889999998888 7999999987765543
No 127
>2kne_B CAM, ATPase, Ca++ transporting, plasma membrane 4; protein/peptide, calcium pump, calmodulin, acetylation, calcium, isopeptide bond, methylation; NMR {Homo sapiens}
Probab=34.21 E-value=16 Score=21.00 Aligned_cols=15 Identities=33% Similarity=0.676 Sum_probs=12.4
Q ss_pred hHHHhhhhhhhhhhh
Q 035705 732 ADLWVRGIRLVTGQA 746 (758)
Q Consensus 732 ~~~w~~~~~~~~~~~ 746 (758)
-.+|++||+-+..|.
T Consensus 5 qiLW~RgL~riqtQ~ 19 (28)
T 2kne_B 5 QILWFRGLNRIQTQI 19 (28)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred ceeeeccHHHHHHHH
Confidence 379999999888773
No 128
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=33.27 E-value=32 Score=26.91 Aligned_cols=39 Identities=5% Similarity=0.168 Sum_probs=30.8
Q ss_pred CCCceEEEEeecCceEEEeecCCchhhHHHhhhhhhhhhh
Q 035705 706 EEPGMFHVVTTQNKEVHFVCQGGLEMADLWVRGIRLVTGQ 745 (758)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~ 745 (758)
.++..|.++..+++.+++.|....+ ...|+..|+.....
T Consensus 56 ~~~~~F~i~~~~~r~~~l~a~s~~e-~~~Wi~al~~a~~~ 94 (103)
T 3rcp_A 56 ADNTRMELIIPGEQHFYMKAVNAAE-RQRWLVALGSSKAS 94 (103)
T ss_dssp TCSSEEEEEETTTEEEEEECSSHHH-HHHHHHHHHTTSCC
T ss_pred CCCceEEEEeCCCCEEEEECCCHHH-HHHHHHHHHHHHHh
Confidence 3466788877667888888888888 79999999987544
No 129
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=32.35 E-value=45 Score=26.55 Aligned_cols=39 Identities=26% Similarity=0.293 Sum_probs=30.9
Q ss_pred CCceEEEEeecCceEEEeecCCchhhHHHhhhhhhhhhhh
Q 035705 707 EPGMFHVVTTQNKEVHFVCQGGLEMADLWVRGIRLVTGQA 746 (758)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~~ 746 (758)
.+..|.+....++.++|.|....+ ...|+..|+..+...
T Consensus 65 ~~~~F~i~~~~~r~~~l~a~s~~e-~~~Wi~ai~~~~~~~ 103 (113)
T 1pls_A 65 RMFVFKITTTKQQDHFFQAAFLEE-RDAWVRDINKAIKCI 103 (113)
T ss_dssp SSSEEEEEETTTEEEEEECSSHHH-HHHHHHHHHHHHHHH
T ss_pred CccEEEEEcCCCCEEEEECCCHHH-HHHHHHHHHHHHhcc
Confidence 445777777777888899888888 799999999876544
No 130
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=29.05 E-value=53 Score=27.11 Aligned_cols=38 Identities=13% Similarity=0.275 Sum_probs=29.8
Q ss_pred CCceEEEEeecCceEEEeecCCchhhHHHhhhhhhhhhh
Q 035705 707 EPGMFHVVTTQNKEVHFVCQGGLEMADLWVRGIRLVTGQ 745 (758)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~ 745 (758)
.+..|.+....++.++|.|+...+ ...|++.|+.....
T Consensus 78 ~~~~F~I~~~~~r~~~l~A~s~~e-~~~Wi~al~~a~~~ 115 (130)
T 2d9v_A 78 RDGLLTVNLREGSRLHLCAETRDD-AIAWKTALMEANST 115 (130)
T ss_dssp TTTEEEEEETTSCEEEEECSSHHH-HHHHHHHHHHHHTC
T ss_pred cCcEEEEEeCCCCEEEEEcCCHHH-HHHHHHHHHHHHcC
Confidence 346788877667788888888887 79999999987543
No 131
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=27.99 E-value=59 Score=27.55 Aligned_cols=41 Identities=7% Similarity=0.155 Sum_probs=31.8
Q ss_pred CCCceEEEEeecCceEEEeecCCchhhHHHhhhhhhhhhhhh
Q 035705 706 EEPGMFHVVTTQNKEVHFVCQGGLEMADLWVRGIRLVTGQAI 747 (758)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~~~ 747 (758)
..+..|.+....++.++|.|....+ ...|+..|+-+++...
T Consensus 87 ~~~~~F~i~~~~~r~~~l~A~s~~e-~~~Wi~al~~ai~~~~ 127 (150)
T 1wg7_A 87 VRRFAFELKMQDKSSYLLAADSEVE-MEEWITILNKILQLNF 127 (150)
T ss_dssp SCTTEEEEECSSSCEEEEECSSHHH-HHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEeCCCcEEEEEeCCHHH-HHHHHHHHHHHHHhhh
Confidence 3455677777666788888888887 7999999998876554
No 132
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=27.53 E-value=2.4e+02 Score=24.74 Aligned_cols=136 Identities=10% Similarity=0.005 Sum_probs=87.7
Q ss_pred CCchHHHHHHHcCcHHHHHHHHhCCCCCCcccccCcch-hHHhhhChHHHHHHHHhcCCCccccchHHHHHHHcCChhHH
Q 035705 88 TEVTALFLAAHAGNLTLVRKLLSLGANVNQKLFRGYAT-TAAVREDHLEILDLLIKAGACQEACEEALLETSYLGQARPA 166 (758)
Q Consensus 88 ~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~~l-~~A~~~g~~~iv~~Ll~~ga~~~~~~~~l~~A~~~g~~~iv 166 (758)
+..+=+-+|...|+++++.-+.+.. +. ......| ..|...|+.++++.-..+--+... .+......|+.+-+
T Consensus 7 D~~~rF~LAL~lg~l~~A~e~a~~l---~~-~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~---L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 7 DPHIRFDLALEYGNLDAALDEAKKL---ND-SITWERLIQEALAQGNASLAEMIYQTQHSFDK---LSFLYLVTGDVNKL 79 (177)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHH---CC-HHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHH---HHHHHHHHTCHHHH
T ss_pred ChHHHHHHHHhcCCHHHHHHHHHHh---CC-HHHHHHHHHHHHHcCChHHHHHHHHHhCCHHH---HHHHHHHhCCHHHH
Confidence 4457788999999999876665532 11 1122357 899999999999998877555432 34445566777666
Q ss_pred HHHHhccCCCCCCCchHHHHHHhcCCH-HHHHHHHhCCCCCCcchhhhhhccccccccCCCCchhHHHHhcCCHHHHHHH
Q 035705 167 ELLMATDLIRPQVSVHALVSACFRGFV-NVVDTLIKCGVDANAIDRVLLQSSKPALHANFDCNALVGAVVSRQISVVRLL 245 (758)
Q Consensus 167 ~~Ll~~~~~~~~~~~t~L~~A~~~g~~-~iv~~Ll~~g~d~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~iv~~L 245 (758)
+.+.+.... ......+++.+...|++ +.+++|.+.|- ..-+...|-.+|..++.+-+
T Consensus 80 ~kla~iA~~-~g~~n~af~~~l~lGdv~~~i~lL~~~~r---------------------~~eA~~~A~t~g~~~~a~~~ 137 (177)
T 3mkq_B 80 SKMQNIAQT-REDFGSMLLNTFYNNSTKERSSIFAEGGS---------------------LPLAYAVAKANGDEAAASAF 137 (177)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHTCHHHHHHHHHHTTC---------------------HHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHH-CccHHHHHHHHHHcCCHHHHHHHHHHCCC---------------------hHHHHHHHHHcCcHHHHHHH
Confidence 666442211 12234567777778885 55666666542 11245567788999999999
Q ss_pred HHc-CCCC
Q 035705 246 LQA-GVKM 252 (758)
Q Consensus 246 l~~-ga~~ 252 (758)
++. |.+.
T Consensus 138 ~~~~~~~~ 145 (177)
T 3mkq_B 138 LEQAEVDE 145 (177)
T ss_dssp HHHTTCCG
T ss_pred HHHhCCcc
Confidence 876 5543
No 133
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=25.47 E-value=48 Score=26.30 Aligned_cols=35 Identities=11% Similarity=0.218 Sum_probs=28.2
Q ss_pred CceEEEEeecCceEEEeecCCchhhHHHhhhhhhhh
Q 035705 708 PGMFHVVTTQNKEVHFVCQGGLEMADLWVRGIRLVT 743 (758)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~ 743 (758)
+..|.+....++.++|.|+...+ ...|+..|+...
T Consensus 76 ~~~F~i~~~~~r~~~l~a~s~~e-~~~Wi~al~~a~ 110 (112)
T 3aj4_A 76 DCMLQIVCRDGKTISLCAESTDD-CLAWKFTLQDSR 110 (112)
T ss_dssp GGEEEEEETTSCEEEEECSSHHH-HHHHHHHHHHHH
T ss_pred CcEEEEEecCCcEEEEEeCCHHH-HHHHHHHHHHHh
Confidence 34677776678888999988888 799999998764
No 134
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=25.43 E-value=58 Score=20.16 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHcCCHHHHHhhh
Q 035705 26 EVSQRLVDAAHVNDVKRANECI 47 (758)
Q Consensus 26 ~~~~~L~~A~~~G~~~~v~~LL 47 (758)
...+.+..||..||.+.++.|=
T Consensus 12 aiEQqiyvA~seGd~etv~~Le 33 (40)
T 1gp8_A 12 AIRKQMDAAASKGDVETYRKLK 33 (40)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHH
Confidence 4556688899999999998773
No 135
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.07 E-value=46 Score=26.95 Aligned_cols=40 Identities=15% Similarity=0.326 Sum_probs=30.9
Q ss_pred CCceEEEEeecCceEEEeecCCchhhHHHhhhhhhhhhhhh
Q 035705 707 EPGMFHVVTTQNKEVHFVCQGGLEMADLWVRGIRLVTGQAI 747 (758)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~~~ 747 (758)
.+..|.+....++.++|.|....+ ...|+..|+.......
T Consensus 68 ~~~~F~i~~~~~r~~~l~a~s~~e-~~~Wi~al~~~~~~~~ 107 (120)
T 2d9x_A 68 DSHTFTVNAASGEQYKLRATDAKE-RQHWVSRLQICTQHHT 107 (120)
T ss_dssp SSSCEEECCSSSCCEEECCSSHHH-HHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCEEEEECCCHHH-HHHHHHHHHHHHHHhh
Confidence 446677776666888888888887 7999999998765543
No 136
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=22.83 E-value=66 Score=25.21 Aligned_cols=35 Identities=17% Similarity=0.452 Sum_probs=28.1
Q ss_pred CCceEEEEeecCceEEEeecCCchhhHHHhhhhhhh
Q 035705 707 EPGMFHVVTTQNKEVHFVCQGGLEMADLWVRGIRLV 742 (758)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~ 742 (758)
.+..|.+....++.++|.|....+ ...|+..|+-.
T Consensus 73 ~~~~F~i~~~~~~~~~l~a~s~~e-~~~Wi~ai~~~ 107 (109)
T 2i5f_A 73 EENLFEIITADEVHYFLQAATPKE-RTEWIKAIQMA 107 (109)
T ss_dssp CCSEEEEECTTCCEEEEECSSHHH-HHHHHHHHHHH
T ss_pred CceEEEEEeCCCCEEEEEcCCHHH-HHHHHHHHHHH
Confidence 456778777766778888888887 79999999865
No 137
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.75 E-value=73 Score=25.34 Aligned_cols=35 Identities=11% Similarity=0.283 Sum_probs=28.0
Q ss_pred CceEEEEeecCceEEEeecCCchhhHHHhhhhhhhh
Q 035705 708 PGMFHVVTTQNKEVHFVCQGGLEMADLWVRGIRLVT 743 (758)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~ 743 (758)
+..|.+....++.++|.|....+ ...|+..|+...
T Consensus 74 ~~~F~i~~~~~r~~~l~a~s~~e-~~~Wi~al~~~~ 108 (117)
T 2d9y_A 74 KHTFKAEHAGVRTYFFSAESPEE-QEAWIQAMGEAA 108 (117)
T ss_dssp SSEEEEECSSSCEEEEECSSHHH-HHHHHHHHHHTT
T ss_pred ccEEEEEcCCCcEEEEEcCCHHH-HHHHHHHHHHHH
Confidence 45677766667888898888887 799999998764
No 138
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=22.62 E-value=54 Score=25.84 Aligned_cols=37 Identities=8% Similarity=0.152 Sum_probs=27.9
Q ss_pred CCCceEEEEeecCceEEEeecCCchhhHHHhhhhhhhh
Q 035705 706 EEPGMFHVVTTQNKEVHFVCQGGLEMADLWVRGIRLVT 743 (758)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~ 743 (758)
..+..|.+...+.+.++|.|....+ ...|+..|+-..
T Consensus 64 ~~~~~F~i~~~~~r~~~l~A~s~~e-~~~Wi~al~~~~ 100 (107)
T 2cof_A 64 DHLYSFRILHKGEELAKLEAKSSEE-MGHWLGLLLSES 100 (107)
T ss_dssp TBSCEEEEEETTEEEEEEECSSHHH-HHHHHHHHHHHS
T ss_pred CCCeEEEEEeCCCeEEEEEcCCHHH-HHHHHHHHHHHH
Confidence 3456777777556668888888887 799999998664
No 139
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=22.24 E-value=56 Score=25.75 Aligned_cols=35 Identities=11% Similarity=0.210 Sum_probs=26.8
Q ss_pred CceEEEEeecCceEEEeecCCchhhHHHhhhhhhhh
Q 035705 708 PGMFHVVTTQNKEVHFVCQGGLEMADLWVRGIRLVT 743 (758)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~ 743 (758)
+..|.+....++.++|.|....+ ...|+..|+..+
T Consensus 68 ~~~F~i~~~~~~~~~~~a~s~~e-~~~Wi~al~~a~ 102 (109)
T 1wgq_A 68 SKVFQLLHKGMVFYVFKADDAHS-TQRWIDAFQEGT 102 (109)
T ss_dssp SSEEEEEETTEEEEEEECSSHHH-HHHHHHHHHHHH
T ss_pred CcEEEEEeCCCeEEEEECCCHHH-HHHHHHHHHHHh
Confidence 45677766555668888888887 799999998763
No 140
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.22 E-value=74 Score=25.56 Aligned_cols=35 Identities=11% Similarity=0.283 Sum_probs=27.6
Q ss_pred CceEEEEeecCceEEEeecCCchhhHHHhhhhhhhh
Q 035705 708 PGMFHVVTTQNKEVHFVCQGGLEMADLWVRGIRLVT 743 (758)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~ 743 (758)
+..|.+....++.++|.|....+ ...|+..|+...
T Consensus 85 ~~~F~i~~~~~r~~~l~a~s~~e-~~~Wi~al~~a~ 119 (122)
T 2yry_A 85 KHTFKAEHAGVRTYFFSAESPEE-QEAWIQAMGEAA 119 (122)
T ss_dssp SSEEEEECSSSCEEEEECSSHHH-HHHHHHHHHHHH
T ss_pred ccEEEEecCCCcEEEEEcCCHHH-HHHHHHHHHHHH
Confidence 44677666667888888888887 799999998764
No 141
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}
Probab=22.15 E-value=83 Score=25.96 Aligned_cols=39 Identities=21% Similarity=0.393 Sum_probs=32.1
Q ss_pred CCCCCceEEEEee-cCceEEEeecCCchhhHHHhhhhhhhh
Q 035705 704 DVEEPGMFHVVTT-QNKEVHFVCQGGLEMADLWVRGIRLVT 743 (758)
Q Consensus 704 ~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~w~~~~~~~~ 743 (758)
++..+..|.+... .|....|+|....+ +..|++.|.-..
T Consensus 72 ~~~~~~~F~L~~~~~G~~Y~fqA~s~~~-~~~W~~ai~~a~ 111 (126)
T 2dtc_A 72 DPEHPDIFQLNNPDKGNVYKFQTGSRFH-AILWHKHLDDAC 111 (126)
T ss_dssp CTTSTTEEEEECTTSCSEEEEECSSHHH-HHHHHHHHHHHH
T ss_pred CCCCCCEEEEeeCCCCCEEEEeCCCHHH-HHHHHHHHHHHH
Confidence 4456788999876 78888899888887 799999998764
No 142
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}
Probab=20.78 E-value=1.1e+02 Score=23.17 Aligned_cols=35 Identities=11% Similarity=0.150 Sum_probs=25.3
Q ss_pred CCCceEEEEeecCceEEEeecCCchhhHHHhhhhhhh
Q 035705 706 EEPGMFHVVTTQNKEVHFVCQGGLEMADLWVRGIRLV 742 (758)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~ 742 (758)
..+..|.+. ..++..++.|+...+ ...|+..||-.
T Consensus 58 ~~~~~F~i~-~~~r~~~l~A~s~~e-~~~Wi~aLq~A 92 (94)
T 2rsg_A 58 FDECRFDIS-VNDSVWYLRAQDPDH-RQQWIDAIEQH 92 (94)
T ss_dssp SCSSEEEEE-ETTEEEEEECCSSCC-THHHHHHHHHH
T ss_pred ccceeEEEE-eCCeEEEEECCCHHH-HHHHHHHHHhh
Confidence 334556554 456778888888887 79999999853
No 143
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.15 E-value=1.1e+02 Score=24.41 Aligned_cols=38 Identities=16% Similarity=0.384 Sum_probs=28.1
Q ss_pred CceEEEEeecCceEEEeecCCchhhHHHhhhhhhhhhhhh
Q 035705 708 PGMFHVVTTQNKEVHFVCQGGLEMADLWVRGIRLVTGQAI 747 (758)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~~~ 747 (758)
+..|.+. ..++.++|.|....+ ...|+..|+-....++
T Consensus 67 ~~~F~I~-~~~r~~~l~a~s~~e-~~~Wi~al~~~~~~~~ 104 (114)
T 2da0_A 67 KKSFDLI-SHNRTYHFQAEDEQD-YVAWISVLTNSKEEAL 104 (114)
T ss_dssp SSCEEEE-ETTEEEEEECSSHHH-HHHHHHHHHHHHHHHH
T ss_pred CCEEEEE-cCCcEEEEEcCCHHH-HHHHHHHHHHHHHHHH
Confidence 4456666 456677788887777 7999999998766553
No 144
>3a98_B Engulfment and cell motility protein 1; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A
Probab=20.12 E-value=63 Score=29.32 Aligned_cols=37 Identities=19% Similarity=0.450 Sum_probs=31.5
Q ss_pred ceEEEEeecCceEEEeecCCchhhHHHhhhhhhhhhhh
Q 035705 709 GMFHVVTTQNKEVHFVCQGGLEMADLWVRGIRLVTGQA 746 (758)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~~ 746 (758)
.-|.++.+.+..+.|.+.+..+ +..|+.||+.++++.
T Consensus 116 laFSii~~~~~~L~fvA~s~~~-~~~W~DGL~~Llg~~ 152 (203)
T 3a98_B 116 LAFSILYDSNCQLNFIAPDKHE-YCIWTDGLNALLGKD 152 (203)
T ss_dssp GEEEEEETTTEEEEEECSSHHH-HHHHHHHHHHHTTCC
T ss_pred eEEEEecCCCceEEEecCCHHH-HHHHHHHHHHHhcCC
Confidence 4677877777899999999998 899999999998754
Done!