BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035707
(713 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 4/136 (2%)
Query: 569 ETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKA 628
E W++L N Y + +A K+ ++P SA W++ G Y +G EA+ ++KA
Sbjct: 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61
Query: 629 LDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGA 688
L+ +P + ++ + G A + AL LD + AWYNLG Y Y
Sbjct: 62 LELDPRSAEAWYNLGNAYYKQGDYDEAI--EYYQKALELDPRSAEAWYNLGNAY--YKQG 117
Query: 689 SALEAVECFEAAALLE 704
EA+E ++ A L+
Sbjct: 118 DYDEAIEYYQKALELD 133
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 602 ASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFL 661
A W++ G Y +G EA+ ++KAL+ +P + ++ + G A +
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAI--EYY 58
Query: 662 TDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALLE 704
AL LD + AWYNLG Y Y EA+E ++ A L+
Sbjct: 59 QKALELDPRSAEAWYNLGNAY--YKQGDYDEAIEYYQKALELD 99
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 12/121 (9%)
Query: 525 QGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEM------------ETWH 572
QG AIE Y L + +++ N + ++D ++E E W+
Sbjct: 14 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWY 73
Query: 573 DLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAE 632
+L N Y + +A K+ ++P SA W++ G Y +G EA+ ++KAL+ +
Sbjct: 74 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133
Query: 633 P 633
P
Sbjct: 134 P 134
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 563 DRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEAL 622
D E W +L N Y ++ A K+ ++P +AS W++ G Y +G Q+A+
Sbjct: 4 DPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAI 63
Query: 623 VSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLG 679
++KAL+ +PN+ + + G+ I + AL LD N A NLG
Sbjct: 64 EYYQKALELDPNNAKAWYRRGNAYYKQ-GDYQKAIEDYQK-ALELDPNNAKAKQNLG 118
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Query: 601 SASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCF 660
SA W + G Y +G Q+A+ ++KAL+ +PN+ + ++ + G A +
Sbjct: 8 SAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAI--EY 65
Query: 661 LTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALLE 704
AL LD N AWY G Y Y +A+E ++ A L+
Sbjct: 66 YQKALELDPNNAKAWYRRGNAY--YKQGDYQKAIEDYQKALELD 107
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Query: 562 HDRSLEME-----TWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKG 616
+ ++LE++ W++L N Y ++ A K+ ++P +A W+ G Y +G
Sbjct: 32 YQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQG 91
Query: 617 LQQEALVSFRKALDAEPNHVPSLVSIARVLRQIG 650
Q+A+ ++KAL+ +PN+ + ++ ++ G
Sbjct: 92 DYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 50.1 bits (118), Expect = 5e-06, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 2/111 (1%)
Query: 569 ETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKA 628
E W++L N Y + +A K+ ++P +A W++ G Y +G EA+ ++KA
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 629 LDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLG 679
L+ +PN+ + ++ + G A + AL LD N A NLG
Sbjct: 70 LELDPNNAEAWYNLGNAYYKQGDYDEAIE--YYQKALELDPNNAEAKQNLG 118
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 601 SASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCF 660
SA W++ G Y +G EA+ ++KAL+ +PN+ + ++ + G A +
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE--Y 65
Query: 661 LTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALLE 704
AL LD N AWYNLG Y Y EA+E ++ A L+
Sbjct: 66 YQKALELDPNNAEAWYNLGNAY--YKQGDYDEAIEYYQKALELD 107
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 601 SASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCF 660
SA W++ G Y +G EA+ ++KAL+ PN+ + ++ + G A +
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAI--EY 65
Query: 661 LTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAA 700
AL L N AWYNLG Y Y EA+E ++ A
Sbjct: 66 YQKALELYPNNAEAWYNLGNAY--YKQGDYDEAIEYYQKA 103
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 2/117 (1%)
Query: 563 DRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEAL 622
D E W++L N Y + +A K+ + P +A W++ G Y +G EA+
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 623 VSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLG 679
++KAL+ PN+ + ++ + G A + AL L N A NLG
Sbjct: 64 EYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAI--EYYQKALELYPNNAEAKQNLG 118
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 562 HDRSLEM-----ETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKG 616
+ ++LE+ E W++L N Y + +A K+ + P +A W++ G Y +G
Sbjct: 32 YQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQG 91
Query: 617 LQQEALVSFRKALDAEPNHVPSLVSIARVLRQIG 650
EA+ ++KAL+ PN+ + ++ ++ G
Sbjct: 92 DYDEAIEYYQKALELYPNNAEAKQNLGNAKQKQG 125
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 67/144 (46%), Gaps = 9/144 (6%)
Query: 512 GELLRTKAKLQIAQGRLKNA-------IETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDR 564
G + + + +LQ A ++A I+ Y+NL A L A + V Q +
Sbjct: 74 GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 133
Query: 565 SLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVS 624
+ + DL N+ +L + +A+ C K+ P A W + G ++ A+G A+
Sbjct: 134 LYCVRS--DLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHH 191
Query: 625 FRKALDAEPNHVPSLVSIARVLRQ 648
F KA+ +PN + + +++ VL++
Sbjct: 192 FEKAVTLDPNFLDAYINLGNVLKE 215
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 92/214 (42%), Gaps = 12/214 (5%)
Query: 476 VKGYLLLARVLSAQKQFADAESVINDSLDQTG-----KWDQGELLRTKAKLQIAQGRLKN 530
+ GY+ LA L A A +L + D G LL+ +L+ A+
Sbjct: 101 IDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160
Query: 531 AIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEME-----TWHDLANVYTSLSQWR 585
AIET N F+A + + ++++ ++ + +L NV +
Sbjct: 161 AIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFD 220
Query: 586 DAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARV 645
A ++ +++P A + +Y +GL A+ ++R+A++ +P+ + ++A
Sbjct: 221 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANA 280
Query: 646 LRQIGGESMATIRCFLTDALRLDRTNTTAWYNLG 679
L++ G + A C+ T ALRL T+ + NL
Sbjct: 281 LKEKGSVAEAE-DCYNT-ALRLCPTHADSLNNLA 312
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 2/111 (1%)
Query: 569 ETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKA 628
+ + +LAN +AE C + + + P A ++ + +G +EA+ +RKA
Sbjct: 272 DAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKA 331
Query: 629 LDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLG 679
L+ P + ++A VL+Q G A + +A+R+ T A+ N+G
Sbjct: 332 LEVFPEFAAAHSNLASVLQQQGKLQEALMH--YKEAIRISPTFADAYSNMG 380
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 598 NPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIG 650
NP A + + G +Y+ +G QEA+ +R AL +P+ + +++A L G
Sbjct: 63 NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAG 115
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 37/67 (55%)
Query: 569 ETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKA 628
E W++L N Y + +A K+ ++P +A W++ G Y +G EA+ ++KA
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 629 LDAEPNH 635
L+ +PN+
Sbjct: 70 LELDPNN 76
Score = 36.6 bits (83), Expect = 0.051, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 601 SASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCF 660
SA W++ G Y +G EA+ ++KAL+ +PN+ + ++ + G A +
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE--Y 65
Query: 661 LTDALRLDRTNTTAWYNLG 679
AL LD N A NLG
Sbjct: 66 YQKALELDPNNAEAKQNLG 84
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 569 ETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKA 628
E W++L N Y + +A K+ ++P SA W++ G Y +G EA+ ++KA
Sbjct: 4 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 63
Query: 629 LDAEP 633
L+ +P
Sbjct: 64 LELDP 68
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 660 FLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALLE 704
+ AL LD + AWYNLG Y Y EA+E ++ A L+
Sbjct: 25 YYQKALELDPRSAEAWYNLGNAY--YKQGDYDEAIEYYQKALELD 67
>pdb|4ABN|A Chain A, Crystal Structure Of Full Length Mouse Strap (Ttc5)
pdb|4ABN|B Chain B, Crystal Structure Of Full Length Mouse Strap (Ttc5)
Length = 474
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 586 DAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARV 645
+AEV LSK+ + P W+ G +Y KG A F AL N V SL +++ V
Sbjct: 121 EAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKV-SLQNLSMV 179
Query: 646 LRQIGGESMATIRCFLTDALR-------LDRTNTTAWYNLGLLY 682
LRQ+ +S + D++R +D + +WY LG Y
Sbjct: 180 LRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAY 223
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 569 ETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSF 625
+ ++ L VY S+ + A K+ +I P + S GL YE KGL+ EA+ F
Sbjct: 108 DAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF 164
Score = 34.7 bits (78), Expect = 0.21, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 615 KGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIG--GESMATIRCFLTDALRLDRTNT 672
KG A+ +++K L A+PN+V +L+ + + IG +++ +++ F+ LD T+
Sbjct: 18 KGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV----LDTTSA 73
Query: 673 TAWYNLG 679
A+Y LG
Sbjct: 74 EAYYILG 80
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 38/75 (50%)
Query: 569 ETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKA 628
E ++ L + + + + A L ++ A+N A ++ GL+Y++ G +A+ ++ K
Sbjct: 74 EAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKT 133
Query: 629 LDAEPNHVPSLVSIA 643
+ +P + + SI
Sbjct: 134 ISIKPGFIRAYQSIG 148
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/106 (20%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
Query: 569 ETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKA 628
+ + ++ N + + A C +++ INP A + +++ G EA+ S+R A
Sbjct: 78 DAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTA 137
Query: 629 LDAEPNHVPSLVSIARVLRQIG-----GESMATIRCFLTDALRLDR 669
L +P+ + ++A L+ + E M + + D L +R
Sbjct: 138 LKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNR 183
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 599 PYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIR 658
P A ++ + +G +EA+ +RKAL+ P + ++A VL+Q G A +
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 65
Query: 659 CFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAA 700
+A+R+ T A+ N+G K A++C+ A
Sbjct: 66 --YKEAIRISPTFADAYSNMGNTLKEMQDVQG--ALQCYTRA 103
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 572 HDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDA 631
++L+N Y S A L ++ + P A W+ G QEAL ++ +ALD
Sbjct: 182 YNLSNNYDS------AAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235
Query: 632 EPNHVPSLVSIA 643
P +V + ++A
Sbjct: 236 NPGYVRVMYNMA 247
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 590 CLSKSKAI---NPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSL 639
LS+ A+ +P A +++ G+ Y K +++AL KA+D +P+H+ +L
Sbjct: 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLAL 230
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 572 HDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDA 631
++L+N Y S A L ++ + P A W+ G QEAL ++ +ALD
Sbjct: 182 YNLSNNYDS------AAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235
Query: 632 EPNHVPSLVSIA 643
P +V + ++A
Sbjct: 236 NPGYVRVMYNMA 247
>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal
Seven Residues Of Hcn2
Length = 365
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 27/46 (58%)
Query: 598 NPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIA 643
+P A W G+ +Q A+V+ ++ L+ +PN++ +L+++A
Sbjct: 95 DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALA 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,857,689
Number of Sequences: 62578
Number of extensions: 658148
Number of successful extensions: 1761
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1688
Number of HSP's gapped (non-prelim): 54
length of query: 713
length of database: 14,973,337
effective HSP length: 106
effective length of query: 607
effective length of database: 8,340,069
effective search space: 5062421883
effective search space used: 5062421883
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)