Query 035707
Match_columns 713
No_of_seqs 1104 out of 4632
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 05:36:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035707.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035707hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4162 Predicted calmodulin-b 100.0 8.9E-67 1.9E-71 535.3 52.2 670 37-713 55-793 (799)
2 KOG4626 O-linked N-acetylgluco 100.0 3.2E-45 7E-50 365.6 32.3 446 83-710 47-492 (966)
3 KOG4626 O-linked N-acetylgluco 100.0 2.1E-42 4.5E-47 345.6 31.8 451 57-687 53-505 (966)
4 TIGR02917 PEP_TPR_lipo putativ 100.0 3.5E-39 7.7E-44 382.1 56.5 612 60-709 30-704 (899)
5 TIGR02917 PEP_TPR_lipo putativ 100.0 1.5E-38 3.3E-43 376.7 54.9 569 59-710 268-873 (899)
6 PRK11447 cellulose synthase su 100.0 2.3E-35 5E-40 350.4 54.3 551 60-704 36-741 (1157)
7 PRK11447 cellulose synthase su 100.0 7.8E-35 1.7E-39 345.9 53.4 550 59-679 69-755 (1157)
8 PRK09782 bacteriophage N4 rece 100.0 6E-32 1.3E-36 306.4 52.0 578 58-712 50-715 (987)
9 TIGR00990 3a0801s09 mitochondr 100.0 5.1E-32 1.1E-36 302.8 47.1 439 150-706 126-574 (615)
10 TIGR00990 3a0801s09 mitochondr 100.0 6.6E-31 1.4E-35 293.9 46.8 437 83-673 126-577 (615)
11 KOG2002 TPR-containing nuclear 100.0 1.1E-30 2.4E-35 275.9 41.3 451 158-713 277-755 (1018)
12 PRK09782 bacteriophage N4 rece 100.0 1.1E-28 2.3E-33 280.1 55.5 584 56-708 82-745 (987)
13 PRK15174 Vi polysaccharide exp 100.0 2.2E-29 4.8E-34 280.3 40.3 341 306-712 46-390 (656)
14 KOG2002 TPR-containing nuclear 100.0 5.6E-28 1.2E-32 255.5 43.8 519 68-703 146-709 (1018)
15 PRK15174 Vi polysaccharide exp 100.0 4.9E-28 1.1E-32 269.5 39.0 339 324-709 6-353 (656)
16 PRK10049 pgaA outer membrane p 100.0 1.1E-25 2.3E-30 256.3 41.1 404 159-709 23-462 (765)
17 PLN03077 Protein ECB2; Provisi 100.0 1.6E-24 3.4E-29 252.2 46.8 531 60-702 129-719 (857)
18 PLN03077 Protein ECB2; Provisi 99.9 1.1E-23 2.4E-28 245.1 48.2 568 57-709 56-692 (857)
19 KOG1126 DNA-binding cell divis 99.9 8.7E-26 1.9E-30 231.1 26.3 302 359-707 321-624 (638)
20 KOG0547 Translocase of outer m 99.9 2.6E-24 5.6E-29 211.4 34.6 235 441-704 326-567 (606)
21 PRK10049 pgaA outer membrane p 99.9 1.9E-23 4.1E-28 238.0 41.5 347 299-709 46-428 (765)
22 PLN03081 pentatricopeptide (PP 99.9 2.8E-23 6E-28 236.0 41.5 457 61-667 96-557 (697)
23 KOG0547 Translocase of outer m 99.9 4.5E-23 9.7E-28 202.7 36.9 427 152-672 116-571 (606)
24 KOG1126 DNA-binding cell divis 99.9 1.6E-24 3.6E-29 221.8 26.1 307 303-673 318-626 (638)
25 KOG1155 Anaphase-promoting com 99.9 3.6E-22 7.9E-27 195.2 40.1 360 298-703 160-536 (559)
26 PRK11788 tetratricopeptide rep 99.9 3.9E-23 8.5E-28 219.7 36.0 302 355-702 35-346 (389)
27 KOG1155 Anaphase-promoting com 99.9 4.6E-21 1E-25 187.6 43.2 445 87-669 81-538 (559)
28 PRK11788 tetratricopeptide rep 99.9 2.1E-22 4.6E-27 214.1 36.5 307 301-666 34-346 (389)
29 KOG1173 Anaphase-promoting com 99.9 3.7E-22 8E-27 200.2 35.1 491 57-648 21-535 (611)
30 PLN03081 pentatricopeptide (PP 99.9 1E-21 2.2E-26 223.2 43.5 431 210-703 93-557 (697)
31 PRK14574 hmsH outer membrane p 99.9 1.1E-20 2.4E-25 210.7 47.6 104 81-236 31-134 (822)
32 KOG2003 TPR repeat-containing 99.9 7.1E-22 1.5E-26 192.0 31.1 450 157-687 243-709 (840)
33 KOG0495 HAT repeat protein [RN 99.9 6.9E-20 1.5E-24 186.0 46.4 378 278-708 421-851 (913)
34 KOG2076 RNA polymerase III tra 99.9 5.2E-20 1.1E-24 194.5 46.6 558 57-709 144-855 (895)
35 KOG2003 TPR repeat-containing 99.9 4.1E-21 8.8E-26 186.7 34.3 479 163-708 161-694 (840)
36 KOG1173 Anaphase-promoting com 99.9 1.6E-21 3.5E-26 195.7 32.5 263 416-708 254-523 (611)
37 PLN03218 maturation of RBCL 1; 99.9 4.7E-19 1E-23 203.2 57.0 402 209-702 477-908 (1060)
38 PLN03218 maturation of RBCL 1; 99.9 1.6E-19 3.4E-24 207.1 52.0 398 161-668 380-784 (1060)
39 KOG0624 dsRNA-activated protei 99.9 7E-21 1.5E-25 179.2 26.7 314 350-709 33-376 (504)
40 KOG1174 Anaphase-promoting com 99.9 2.1E-18 4.5E-23 166.6 41.3 299 362-708 203-505 (564)
41 KOG0624 dsRNA-activated protei 99.9 2.6E-19 5.7E-24 168.7 33.8 358 298-707 34-426 (504)
42 KOG4162 Predicted calmodulin-b 99.9 4.4E-18 9.6E-23 177.1 44.5 590 67-710 19-756 (799)
43 KOG0495 HAT repeat protein [RN 99.9 9.1E-18 2E-22 170.8 44.3 457 217-709 264-788 (913)
44 PRK14574 hmsH outer membrane p 99.9 1.1E-18 2.4E-23 194.8 39.9 366 298-708 30-518 (822)
45 PF13429 TPR_15: Tetratricopep 99.9 6.1E-22 1.3E-26 199.5 12.5 264 400-703 13-277 (280)
46 TIGR00540 hemY_coli hemY prote 99.9 5E-19 1.1E-23 187.4 33.6 305 357-703 86-399 (409)
47 KOG2076 RNA polymerase III tra 99.9 1.1E-18 2.4E-23 184.6 34.0 351 310-701 147-510 (895)
48 PF13429 TPR_15: Tetratricopep 99.9 3.7E-21 8E-26 193.8 14.2 267 357-667 10-277 (280)
49 KOG0548 Molecular co-chaperone 99.8 1.3E-18 2.8E-23 174.5 29.9 342 308-708 8-460 (539)
50 PRK12370 invasion protein regu 99.8 3.2E-19 6.9E-24 196.0 28.3 251 420-703 275-535 (553)
51 KOG1174 Anaphase-promoting com 99.8 2.8E-17 6.1E-22 158.8 37.1 289 351-685 228-518 (564)
52 KOG1129 TPR repeat-containing 99.8 5.1E-19 1.1E-23 165.7 21.1 238 445-712 227-467 (478)
53 PRK12370 invasion protein regu 99.8 2.8E-18 6E-23 188.6 29.1 260 370-667 276-535 (553)
54 PRK11189 lipoprotein NlpI; Pro 99.8 3.6E-18 7.8E-23 172.1 26.8 237 370-650 41-285 (296)
55 PRK10747 putative protoheme IX 99.8 3.5E-17 7.5E-22 172.4 35.1 302 357-704 86-391 (398)
56 KOG1129 TPR repeat-containing 99.8 8.6E-19 1.9E-23 164.2 18.7 238 416-682 233-473 (478)
57 KOG0548 Molecular co-chaperone 99.8 3.9E-17 8.5E-22 164.0 31.8 390 273-699 12-485 (539)
58 COG3063 PilF Tfp pilus assembl 99.8 1.8E-17 3.9E-22 149.1 23.8 208 442-674 36-243 (250)
59 KOG1125 TPR repeat-containing 99.8 1.3E-18 2.9E-23 175.9 18.6 240 445-706 289-530 (579)
60 PRK11189 lipoprotein NlpI; Pro 99.8 1.2E-17 2.7E-22 168.2 25.8 238 418-687 38-286 (296)
61 KOG1125 TPR repeat-containing 99.8 1.2E-18 2.5E-23 176.3 18.0 256 399-695 289-563 (579)
62 TIGR00540 hemY_coli hemY prote 99.8 6.2E-17 1.3E-21 171.5 32.2 297 309-667 91-399 (409)
63 TIGR02521 type_IV_pilW type IV 99.8 4.6E-17 9.9E-22 159.7 26.4 202 441-667 31-232 (234)
64 TIGR02521 type_IV_pilW type IV 99.8 6.3E-17 1.4E-21 158.7 26.9 205 394-633 30-234 (234)
65 COG3063 PilF Tfp pilus assembl 99.8 3.7E-16 8.1E-21 140.7 24.5 211 393-638 33-243 (250)
66 PLN02789 farnesyltranstransfer 99.8 2E-16 4.3E-21 158.6 25.2 238 420-702 34-301 (320)
67 PRK10747 putative protoheme IX 99.8 1.1E-15 2.4E-20 161.0 31.0 268 417-709 95-363 (398)
68 COG2956 Predicted N-acetylgluc 99.8 1.8E-15 3.9E-20 142.3 28.5 264 417-706 46-314 (389)
69 KOG1840 Kinesin light chain [C 99.7 8.4E-16 1.8E-20 160.5 26.7 248 436-702 194-478 (508)
70 KOG1127 TPR repeat-containing 99.7 3.6E-16 7.8E-21 166.3 23.3 328 350-703 487-913 (1238)
71 KOG0550 Molecular chaperone (D 99.7 1.3E-16 2.9E-21 154.6 18.4 262 417-706 60-353 (486)
72 COG2956 Predicted N-acetylgluc 99.7 1.5E-14 3.3E-19 136.1 30.9 275 311-642 44-322 (389)
73 PLN02789 farnesyltranstransfer 99.7 2.5E-15 5.4E-20 150.7 27.4 232 420-677 51-312 (320)
74 KOG1840 Kinesin light chain [C 99.7 2.4E-15 5.2E-20 157.1 27.7 244 395-666 199-478 (508)
75 KOG1127 TPR repeat-containing 99.7 3.1E-14 6.7E-19 151.9 35.3 562 65-707 381-1071(1238)
76 KOG1156 N-terminal acetyltrans 99.7 3.4E-14 7.4E-19 145.7 34.2 332 312-707 17-438 (700)
77 KOG0550 Molecular chaperone (D 99.7 5.7E-16 1.2E-20 150.3 19.2 281 358-670 52-353 (486)
78 cd05804 StaR_like StaR_like; a 99.7 3.9E-14 8.5E-19 148.6 33.6 313 351-704 2-337 (355)
79 KOG1156 N-terminal acetyltrans 99.7 2.3E-13 5.1E-18 139.6 34.2 369 292-703 31-511 (700)
80 KOG2376 Signal recognition par 99.6 1E-11 2.3E-16 126.4 40.4 473 60-660 20-513 (652)
81 KOG1915 Cell cycle control pro 99.6 6.8E-11 1.5E-15 117.1 42.1 489 75-704 62-586 (677)
82 KOG1915 Cell cycle control pro 99.6 1.4E-10 3E-15 115.0 43.4 423 215-708 84-541 (677)
83 TIGR03302 OM_YfiO outer membra 99.6 8.4E-14 1.8E-18 136.6 20.9 190 477-706 34-235 (235)
84 cd05804 StaR_like StaR_like; a 99.6 1.7E-12 3.6E-17 136.2 32.1 317 299-668 3-337 (355)
85 KOG3785 Uncharacterized conser 99.6 1.2E-10 2.7E-15 111.1 37.3 441 55-605 25-497 (557)
86 TIGR03302 OM_YfiO outer membra 99.6 4.9E-13 1.1E-17 131.1 21.7 187 393-633 31-234 (235)
87 PRK15359 type III secretion sy 99.6 1.4E-13 3.1E-18 122.2 15.7 114 571-686 27-140 (144)
88 PF12569 NARP1: NMDA receptor- 99.6 9.9E-11 2.2E-15 124.4 39.8 463 152-700 5-517 (517)
89 COG3071 HemY Uncharacterized e 99.5 7.7E-11 1.7E-15 115.1 34.1 300 357-703 86-390 (400)
90 PRK15359 type III secretion sy 99.5 9E-14 2E-18 123.6 12.7 117 587-710 12-128 (144)
91 KOG3060 Uncharacterized conser 99.5 4.8E-12 1E-16 115.8 23.4 185 438-647 49-236 (289)
92 KOG2376 Signal recognition par 99.5 1.6E-10 3.5E-15 117.9 36.6 402 272-708 21-492 (652)
93 PRK10370 formate-dependent nit 99.5 3E-13 6.5E-18 126.9 16.1 126 581-708 52-178 (198)
94 KOG3785 Uncharacterized conser 99.5 3E-11 6.6E-16 115.2 29.2 370 273-698 32-452 (557)
95 KOG2047 mRNA splicing factor [ 99.5 1.1E-09 2.3E-14 112.8 41.9 369 295-705 240-689 (835)
96 PF12569 NARP1: NMDA receptor- 99.5 2.6E-11 5.6E-16 128.8 30.7 318 355-706 4-337 (517)
97 KOG1128 Uncharacterized conser 99.5 6E-12 1.3E-16 131.2 23.7 223 438-704 395-617 (777)
98 PRK04841 transcriptional regul 99.5 7.5E-11 1.6E-15 139.7 36.4 320 354-707 408-764 (903)
99 PRK15179 Vi polysaccharide bio 99.4 5.3E-12 1.1E-16 139.1 21.2 139 564-706 82-220 (694)
100 KOG3060 Uncharacterized conser 99.4 4.1E-11 8.9E-16 109.7 23.1 181 477-681 53-234 (289)
101 KOG1130 Predicted G-alpha GTPa 99.4 3.2E-12 7E-17 124.1 16.9 295 360-687 22-370 (639)
102 PRK10370 formate-dependent nit 99.4 5.8E-12 1.3E-16 118.2 18.2 124 525-672 52-178 (198)
103 KOG2047 mRNA splicing factor [ 99.4 5.7E-08 1.2E-12 100.4 46.6 555 68-687 84-709 (835)
104 PRK14720 transcript cleavage f 99.4 2.9E-11 6.3E-16 133.9 24.3 208 435-684 25-269 (906)
105 COG5010 TadD Flp pilus assembl 99.4 2.1E-11 4.6E-16 112.9 18.9 175 460-662 52-226 (257)
106 TIGR02552 LcrH_SycD type III s 99.4 3.2E-12 6.9E-17 113.3 13.2 117 589-709 4-120 (135)
107 COG5010 TadD Flp pilus assembl 99.4 2.5E-11 5.3E-16 112.5 19.2 178 493-699 50-227 (257)
108 PRK04841 transcriptional regul 99.4 2.6E-09 5.6E-14 126.7 41.3 329 301-671 408-764 (903)
109 KOG1130 Predicted G-alpha GTPa 99.4 4.6E-12 1E-16 123.0 14.2 272 417-703 28-344 (639)
110 KOG0553 TPR repeat-containing 99.4 9.5E-12 2.1E-16 117.4 14.8 118 568-687 81-198 (304)
111 PRK15179 Vi polysaccharide bio 99.4 6.2E-11 1.3E-15 130.7 23.6 138 510-671 84-221 (694)
112 COG3071 HemY Uncharacterized e 99.4 1.9E-09 4.1E-14 105.6 30.4 263 417-708 95-362 (400)
113 KOG4340 Uncharacterized conser 99.4 9.5E-10 2.1E-14 102.8 26.7 368 275-708 22-448 (459)
114 PF04733 Coatomer_E: Coatomer 99.3 9E-12 2E-16 123.6 13.0 255 417-708 12-270 (290)
115 PRK14720 transcript cleavage f 99.3 2.3E-10 5E-15 126.9 25.1 236 350-613 26-268 (906)
116 KOG1128 Uncharacterized conser 99.3 3.6E-11 7.7E-16 125.6 17.2 218 396-667 399-616 (777)
117 TIGR02552 LcrH_SycD type III s 99.3 4.2E-11 9.2E-16 106.1 13.9 108 566-675 15-122 (135)
118 PF04733 Coatomer_E: Coatomer 99.3 6.6E-11 1.4E-15 117.5 14.6 260 363-674 9-272 (290)
119 PRK15363 pathogenicity island 99.3 6.2E-11 1.3E-15 102.8 12.3 102 565-668 32-133 (157)
120 KOG4340 Uncharacterized conser 99.2 9.5E-10 2.1E-14 102.8 19.6 186 366-596 21-206 (459)
121 KOG0553 TPR repeat-containing 99.2 1.5E-10 3.2E-15 109.5 13.3 118 478-619 83-200 (304)
122 PRK15363 pathogenicity island 99.2 2.7E-10 6E-15 98.8 12.2 112 593-708 25-137 (157)
123 COG4783 Putative Zn-dependent 99.2 3.1E-08 6.8E-13 99.9 27.7 153 472-668 303-455 (484)
124 COG4783 Putative Zn-dependent 99.1 9.3E-09 2E-13 103.6 21.3 152 510-704 304-455 (484)
125 PLN03088 SGT1, suppressor of 99.1 1.4E-09 3.1E-14 112.3 15.4 114 571-686 5-118 (356)
126 COG4235 Cytochrome c biogenesi 99.1 5.8E-09 1.3E-13 99.7 16.0 123 583-707 137-260 (287)
127 PLN03088 SGT1, suppressor of 99.0 4.7E-09 1E-13 108.4 15.7 113 515-649 5-117 (356)
128 PRK02603 photosystem I assembl 99.0 1.1E-08 2.4E-13 94.4 16.4 142 501-686 24-165 (172)
129 PF13525 YfiO: Outer membrane 99.0 2.5E-08 5.4E-13 94.5 19.0 171 477-693 6-197 (203)
130 PF13525 YfiO: Outer membrane 99.0 2.8E-08 6.2E-13 94.1 18.8 170 439-653 3-195 (203)
131 PRK10866 outer membrane biogen 99.0 1.1E-07 2.5E-12 92.2 22.6 181 439-625 30-235 (243)
132 PRK10866 outer membrane biogen 99.0 1.6E-07 3.4E-12 91.2 23.5 188 353-594 30-238 (243)
133 TIGR02795 tol_pal_ybgF tol-pal 99.0 5.3E-09 1.1E-13 90.2 12.0 105 568-674 2-112 (119)
134 TIGR02795 tol_pal_ybgF tol-pal 99.0 9.6E-09 2.1E-13 88.6 13.2 104 602-709 2-111 (119)
135 CHL00033 ycf3 photosystem I as 99.0 2E-08 4.3E-13 92.4 15.4 103 492-613 15-117 (168)
136 KOG1070 rRNA processing protei 99.0 1.4E-07 2.9E-12 105.5 23.7 237 423-687 1441-1686(1710)
137 cd00189 TPR Tetratricopeptide 98.9 1.1E-08 2.4E-13 83.9 11.8 98 604-705 2-99 (100)
138 KOG1941 Acetylcholine receptor 98.9 4.6E-07 9.9E-12 87.5 23.5 317 355-702 6-359 (518)
139 PF14938 SNAP: Soluble NSF att 98.9 6.8E-08 1.5E-12 96.8 18.6 218 420-669 29-268 (282)
140 PF13414 TPR_11: TPR repeat; P 98.9 4.5E-09 9.9E-14 80.5 7.3 66 568-633 3-69 (69)
141 PRK02603 photosystem I assembl 98.9 2E-08 4.4E-13 92.7 13.0 120 564-707 31-153 (172)
142 CHL00033 ycf3 photosystem I as 98.9 1.9E-08 4.1E-13 92.6 12.6 102 602-707 35-153 (168)
143 PF09976 TPR_21: Tetratricopep 98.9 7.4E-08 1.6E-12 86.1 15.6 118 579-701 22-145 (145)
144 cd00189 TPR Tetratricopeptide 98.9 1.8E-08 4E-13 82.5 11.0 99 570-670 2-100 (100)
145 KOG3081 Vesicle coat complex C 98.9 8.6E-07 1.9E-11 82.5 22.3 221 418-673 20-277 (299)
146 KOG3081 Vesicle coat complex C 98.9 1.8E-06 3.8E-11 80.5 24.3 165 441-637 108-277 (299)
147 KOG1070 rRNA processing protei 98.9 8.1E-07 1.8E-11 99.6 25.9 219 458-704 1441-1664(1710)
148 COG0457 NrfG FOG: TPR repeat [ 98.9 3.6E-06 7.8E-11 82.2 28.8 225 421-670 38-268 (291)
149 PRK10153 DNA-binding transcrip 98.9 6.5E-08 1.4E-12 104.0 17.1 137 568-709 339-488 (517)
150 PF13414 TPR_11: TPR repeat; P 98.9 5.4E-09 1.2E-13 80.1 6.4 67 635-705 2-69 (69)
151 PF09976 TPR_21: Tetratricopep 98.8 1.5E-07 3.2E-12 84.2 16.1 120 489-628 24-144 (145)
152 COG4235 Cytochrome c biogenesi 98.8 6.6E-08 1.4E-12 92.6 14.0 121 528-672 138-261 (287)
153 PF13432 TPR_16: Tetratricopep 98.8 1.7E-08 3.8E-13 76.1 7.9 64 573-636 2-65 (65)
154 PRK11906 transcriptional regul 98.8 1.7E-07 3.7E-12 95.3 16.6 171 358-538 258-433 (458)
155 COG4785 NlpI Lipoprotein NlpI, 98.8 1.2E-06 2.5E-11 78.8 19.7 197 393-632 63-267 (297)
156 COG0457 NrfG FOG: TPR repeat [ 98.8 5.7E-06 1.2E-10 80.8 27.5 224 454-706 36-268 (291)
157 PF13432 TPR_16: Tetratricopep 98.8 7.5E-09 1.6E-13 78.1 5.1 64 641-708 2-65 (65)
158 PF12895 Apc3: Anaphase-promot 98.8 2.7E-08 5.9E-13 79.4 8.5 83 525-628 2-84 (84)
159 KOG1941 Acetylcholine receptor 98.8 2.7E-06 5.9E-11 82.3 23.0 274 362-666 50-359 (518)
160 PF14938 SNAP: Soluble NSF att 98.8 1.5E-07 3.3E-12 94.3 15.6 206 481-705 40-268 (282)
161 PF12895 Apc3: Anaphase-promot 98.8 2.4E-08 5.2E-13 79.7 7.9 79 420-501 3-83 (84)
162 PRK10153 DNA-binding transcrip 98.8 3.3E-07 7.1E-12 98.7 18.6 153 435-637 331-488 (517)
163 PRK11906 transcriptional regul 98.8 1.8E-07 3.8E-12 95.2 15.4 161 516-702 259-435 (458)
164 KOG3616 Selective LIM binding 98.8 0.00016 3.5E-09 76.3 37.0 255 210-537 550-816 (1636)
165 COG3898 Uncharacterized membra 98.8 3.4E-05 7.3E-10 75.8 29.9 290 359-702 88-391 (531)
166 KOG0543 FKBP-type peptidyl-pro 98.8 2.1E-07 4.6E-12 92.2 15.0 134 568-705 208-357 (397)
167 KOG0543 FKBP-type peptidyl-pro 98.7 2.8E-07 6E-12 91.5 15.5 101 568-669 257-357 (397)
168 KOG3617 WD40 and TPR repeat-co 98.7 0.00017 3.7E-09 77.2 36.4 211 300-541 910-1174(1416)
169 KOG2053 Mitochondrial inherita 98.7 6.8E-05 1.5E-09 81.4 33.4 186 314-537 21-215 (932)
170 PRK15331 chaperone protein Sic 98.7 8.7E-08 1.9E-12 83.7 9.7 105 564-671 33-137 (165)
171 KOG3617 WD40 and TPR repeat-co 98.7 5E-05 1.1E-09 81.1 31.2 138 356-541 859-996 (1416)
172 PRK10803 tol-pal system protei 98.7 6E-07 1.3E-11 87.7 15.7 106 513-637 143-252 (263)
173 KOG4648 Uncharacterized conser 98.7 3.3E-08 7.2E-13 94.4 6.4 97 446-545 102-198 (536)
174 PRK10803 tol-pal system protei 98.7 3E-07 6.6E-12 89.7 13.0 105 568-674 142-253 (263)
175 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 8.8E-07 1.9E-11 91.0 15.6 122 573-701 174-295 (395)
176 COG3898 Uncharacterized membra 98.6 8.9E-05 1.9E-09 72.9 27.6 264 354-667 119-392 (531)
177 COG4785 NlpI Lipoprotein NlpI, 98.6 4E-06 8.6E-11 75.5 16.7 220 354-615 64-288 (297)
178 PRK15331 chaperone protein Sic 98.6 1.2E-06 2.6E-11 76.6 13.1 104 510-636 35-138 (165)
179 KOG2471 TPR repeat-containing 98.6 0.00018 4E-09 72.7 29.4 122 353-488 238-381 (696)
180 PF07079 DUF1347: Protein of u 98.5 0.0014 3.1E-08 66.1 35.2 145 155-315 10-180 (549)
181 PF12688 TPR_5: Tetratrico pep 98.5 1.3E-06 2.9E-11 73.6 12.1 98 514-630 3-103 (120)
182 COG4105 ComL DNA uptake lipopr 98.5 2.1E-05 4.5E-10 74.0 21.0 173 512-707 34-237 (254)
183 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 1.8E-06 3.9E-11 88.7 15.3 125 480-631 173-297 (395)
184 PF12688 TPR_5: Tetratrico pep 98.5 1.7E-06 3.7E-11 73.0 12.4 96 569-666 2-103 (120)
185 PF13371 TPR_9: Tetratricopept 98.5 6.6E-07 1.4E-11 69.3 8.5 69 575-643 2-70 (73)
186 PF14559 TPR_19: Tetratricopep 98.5 3.8E-07 8.3E-12 69.4 6.8 65 579-643 2-66 (68)
187 KOG4648 Uncharacterized conser 98.5 1.3E-07 2.8E-12 90.5 4.2 233 417-677 108-340 (536)
188 COG4700 Uncharacterized protei 98.4 3E-05 6.4E-10 68.3 18.0 130 442-595 90-220 (251)
189 COG4105 ComL DNA uptake lipopr 98.4 4.5E-05 9.8E-10 71.8 20.3 174 441-672 34-238 (254)
190 COG4700 Uncharacterized protei 98.4 4.6E-05 9.9E-10 67.1 18.9 128 568-700 89-219 (251)
191 KOG2471 TPR repeat-containing 98.4 1.3E-05 2.8E-10 80.7 17.6 145 61-233 215-364 (696)
192 COG1729 Uncharacterized protei 98.4 4.5E-06 9.8E-11 79.2 13.7 108 515-641 144-254 (262)
193 PF14559 TPR_19: Tetratricopep 98.4 8.6E-07 1.9E-11 67.5 7.4 65 418-484 3-67 (68)
194 KOG2796 Uncharacterized conser 98.4 0.00015 3.3E-09 67.5 22.0 209 440-671 68-319 (366)
195 COG1729 Uncharacterized protei 98.4 8E-06 1.7E-10 77.5 14.1 105 571-677 144-254 (262)
196 KOG2053 Mitochondrial inherita 98.4 0.00042 9E-09 75.5 28.5 279 417-702 20-336 (932)
197 PF13512 TPR_18: Tetratricopep 98.4 9.4E-06 2E-10 69.5 13.1 87 512-617 10-99 (142)
198 KOG4234 TPR repeat-containing 98.4 4.5E-06 9.7E-11 74.2 11.2 114 515-645 98-211 (271)
199 PF13371 TPR_9: Tetratricopept 98.3 2.2E-06 4.8E-11 66.3 7.6 68 609-678 2-69 (73)
200 KOG4234 TPR repeat-containing 98.3 9.7E-06 2.1E-10 72.1 11.5 112 568-681 95-211 (271)
201 PF13512 TPR_18: Tetratricopep 98.3 1.8E-05 3.9E-10 67.8 12.9 92 473-583 7-99 (142)
202 KOG3616 Selective LIM binding 98.3 0.00055 1.2E-08 72.5 25.4 224 417-700 672-908 (1636)
203 PF06552 TOM20_plant: Plant sp 98.3 3.5E-06 7.6E-11 74.4 8.1 90 619-708 8-114 (186)
204 KOG2796 Uncharacterized conser 98.2 0.00055 1.2E-08 63.9 22.3 155 458-636 166-320 (366)
205 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 3.1E-06 6.8E-11 86.2 8.5 70 597-668 70-142 (453)
206 PF13424 TPR_12: Tetratricopep 98.2 2.9E-06 6.2E-11 66.6 5.8 67 565-631 2-75 (78)
207 KOG4555 TPR repeat-containing 98.2 3.3E-05 7.2E-10 63.7 11.4 101 570-672 45-149 (175)
208 PF13424 TPR_12: Tetratricopep 98.2 5.9E-06 1.3E-10 64.8 7.1 73 510-597 3-75 (78)
209 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 6.1E-06 1.3E-10 84.1 8.7 72 561-632 68-142 (453)
210 KOG1586 Protein required for f 98.1 0.00039 8.5E-09 63.8 18.6 159 350-522 68-241 (288)
211 KOG4507 Uncharacterized conser 98.1 0.00023 5E-09 73.5 19.0 98 609-710 614-712 (886)
212 KOG4555 TPR repeat-containing 98.1 9.3E-05 2E-09 61.1 12.7 97 605-705 46-146 (175)
213 PF06552 TOM20_plant: Plant sp 98.1 2.6E-05 5.7E-10 68.9 10.2 97 584-680 7-122 (186)
214 KOG0985 Vesicle coat protein c 98.0 0.013 2.8E-07 64.9 30.9 167 444-653 1197-1371(1666)
215 PF10300 DUF3808: Protein of u 98.0 0.0078 1.7E-07 64.7 29.7 123 419-543 246-378 (468)
216 PF04184 ST7: ST7 protein; In 98.0 0.001 2.2E-08 68.3 20.1 189 417-640 179-384 (539)
217 KOG2300 Uncharacterized conser 98.0 0.032 6.9E-07 57.1 44.9 211 453-687 287-540 (629)
218 KOG1914 mRNA cleavage and poly 97.9 0.039 8.5E-07 57.3 30.3 136 350-506 15-167 (656)
219 PF05843 Suf: Suppressor of fo 97.9 0.00019 4.1E-09 71.7 13.3 135 570-708 3-141 (280)
220 KOG2610 Uncharacterized conser 97.9 0.0014 3.1E-08 63.3 18.1 163 481-665 108-274 (491)
221 PF13428 TPR_14: Tetratricopep 97.9 3.4E-05 7.3E-10 52.5 5.3 38 605-642 4-41 (44)
222 PF13428 TPR_14: Tetratricopep 97.9 3E-05 6.4E-10 52.7 4.9 42 569-610 2-43 (44)
223 KOG4642 Chaperone-dependent E3 97.8 0.00025 5.3E-09 65.3 11.8 97 569-667 11-107 (284)
224 KOG1585 Protein required for f 97.8 0.0037 8E-08 58.0 19.2 200 443-661 33-250 (308)
225 PF05843 Suf: Suppressor of fo 97.8 0.00087 1.9E-08 67.0 17.0 127 417-545 12-140 (280)
226 PF04184 ST7: ST7 protein; In 97.8 0.0026 5.6E-08 65.4 19.9 228 365-645 178-428 (539)
227 KOG2610 Uncharacterized conser 97.8 0.0015 3.3E-08 63.2 16.9 159 517-701 108-274 (491)
228 KOG1586 Protein required for f 97.8 0.0026 5.7E-08 58.5 17.3 137 568-709 74-230 (288)
229 KOG4642 Chaperone-dependent E3 97.8 7.4E-05 1.6E-09 68.6 7.4 95 608-706 16-110 (284)
230 KOG1585 Protein required for f 97.8 0.0099 2.1E-07 55.3 20.9 191 417-626 42-251 (308)
231 PF13431 TPR_17: Tetratricopep 97.8 2.5E-05 5.5E-10 49.4 3.1 32 661-694 2-33 (34)
232 KOG1550 Extracellular protein 97.8 0.021 4.6E-07 63.0 27.8 283 374-707 230-542 (552)
233 KOG0985 Vesicle coat protein c 97.8 0.035 7.6E-07 61.7 28.0 330 301-694 983-1374(1666)
234 PF02259 FAT: FAT domain; Int 97.7 0.022 4.7E-07 59.5 26.6 137 477-613 147-303 (352)
235 COG2909 MalT ATP-dependent tra 97.7 0.13 2.8E-06 57.1 32.6 305 352-699 344-684 (894)
236 PF13281 DUF4071: Domain of un 97.7 0.015 3.1E-07 59.3 22.4 179 395-600 141-337 (374)
237 PF10345 Cohesin_load: Cohesin 97.6 0.082 1.8E-06 59.4 30.5 297 374-699 39-429 (608)
238 PF02259 FAT: FAT domain; Int 97.6 0.055 1.2E-06 56.5 27.6 142 565-706 143-341 (352)
239 PF10345 Cohesin_load: Cohesin 97.6 0.12 2.6E-06 58.1 31.5 317 354-687 58-464 (608)
240 PF13431 TPR_17: Tetratricopep 97.6 5.5E-05 1.2E-09 47.8 2.9 32 591-622 2-33 (34)
241 PF00515 TPR_1: Tetratricopept 97.6 9.7E-05 2.1E-09 47.0 3.9 34 672-707 1-34 (34)
242 PF07719 TPR_2: Tetratricopept 97.6 0.00014 2.9E-09 46.3 4.5 34 672-707 1-34 (34)
243 KOG0545 Aryl-hydrocarbon recep 97.5 0.00051 1.1E-08 63.4 9.2 105 568-674 178-300 (329)
244 PF13281 DUF4071: Domain of un 97.5 0.018 4E-07 58.6 20.4 174 511-707 140-338 (374)
245 COG3118 Thioredoxin domain-con 97.4 0.018 3.8E-07 55.7 18.4 65 438-503 131-195 (304)
246 KOG0530 Protein farnesyltransf 97.4 0.032 7E-07 52.5 19.1 221 419-682 39-269 (318)
247 KOG0545 Aryl-hydrocarbon recep 97.4 0.0025 5.3E-08 59.1 11.5 123 512-638 178-300 (329)
248 PF00515 TPR_1: Tetratricopept 97.4 0.00031 6.8E-09 44.6 4.0 31 604-634 3-33 (34)
249 PF10300 DUF3808: Protein of u 97.4 0.011 2.4E-07 63.5 18.3 163 449-631 196-376 (468)
250 KOG0530 Protein farnesyltransf 97.3 0.092 2E-06 49.6 21.3 204 423-646 60-269 (318)
251 KOG0376 Serine-threonine phosp 97.3 0.00049 1.1E-08 70.3 7.0 109 572-682 8-116 (476)
252 PF07719 TPR_2: Tetratricopept 97.3 0.00056 1.2E-08 43.4 4.7 31 604-634 3-33 (34)
253 KOG0890 Protein kinase of the 97.3 0.14 3.1E-06 62.6 27.3 326 350-682 1372-1799(2382)
254 KOG0376 Serine-threonine phosp 97.3 0.00023 5E-09 72.6 4.1 98 608-709 10-107 (476)
255 PF03704 BTAD: Bacterial trans 97.2 0.0042 9.2E-08 55.4 11.7 63 568-630 62-124 (146)
256 COG2909 MalT ATP-dependent tra 97.2 0.53 1.1E-05 52.5 32.4 247 353-628 413-685 (894)
257 PF08631 SPO22: Meiosis protei 97.2 0.29 6.2E-06 49.0 26.5 162 365-541 3-186 (278)
258 KOG1550 Extracellular protein 97.2 0.11 2.4E-06 57.4 24.5 246 421-704 227-505 (552)
259 COG3118 Thioredoxin domain-con 97.1 0.019 4.1E-07 55.4 15.1 163 356-538 135-298 (304)
260 KOG4507 Uncharacterized conser 97.1 0.023 5E-07 59.3 16.7 102 580-683 619-721 (886)
261 KOG1914 mRNA cleavage and poly 97.1 0.46 9.9E-06 49.8 38.0 132 570-705 368-503 (656)
262 KOG1258 mRNA processing protei 97.1 0.53 1.1E-05 50.2 28.6 116 423-540 62-179 (577)
263 KOG2300 Uncharacterized conser 97.1 0.47 1E-05 49.0 38.3 203 489-710 288-521 (629)
264 COG2976 Uncharacterized protei 97.0 0.056 1.2E-06 48.9 15.7 100 515-634 92-191 (207)
265 KOG0551 Hsp90 co-chaperone CNS 97.0 0.0095 2.1E-07 58.0 11.6 102 393-507 79-184 (390)
266 PF13181 TPR_8: Tetratricopept 96.9 0.0015 3.3E-08 41.3 4.1 33 673-707 2-34 (34)
267 COG2976 Uncharacterized protei 96.9 0.025 5.3E-07 51.1 12.9 100 356-473 90-191 (207)
268 PF07079 DUF1347: Protein of u 96.9 0.68 1.5E-05 47.5 40.2 196 417-628 309-521 (549)
269 PF08631 SPO22: Meiosis protei 96.9 0.6 1.3E-05 46.6 27.6 99 94-222 3-102 (278)
270 COG0790 FOG: TPR repeat, SEL1 96.8 0.65 1.4E-05 46.9 24.7 165 417-616 52-236 (292)
271 COG0790 FOG: TPR repeat, SEL1 96.8 0.16 3.6E-06 51.3 20.1 167 451-650 51-236 (292)
272 PF03704 BTAD: Bacterial trans 96.8 0.023 5E-07 50.6 12.2 117 569-702 7-124 (146)
273 PF08424 NRDE-2: NRDE-2, neces 96.7 0.15 3.2E-06 52.1 19.0 164 427-598 6-184 (321)
274 PF09613 HrpB1_HrpK: Bacterial 96.7 0.12 2.7E-06 45.5 15.5 112 568-683 10-121 (160)
275 KOG0551 Hsp90 co-chaperone CNS 96.7 0.014 2.9E-07 56.9 10.4 105 511-633 80-184 (390)
276 PF13181 TPR_8: Tetratricopept 96.6 0.0037 8E-08 39.5 3.9 30 604-633 3-32 (34)
277 KOG1308 Hsp70-interacting prot 96.6 0.0012 2.7E-08 64.3 2.3 124 574-702 120-243 (377)
278 PF04781 DUF627: Protein of un 96.4 0.038 8.3E-07 45.1 9.7 106 361-470 2-107 (111)
279 KOG1308 Hsp70-interacting prot 96.4 0.0031 6.8E-08 61.6 3.8 91 612-706 124-214 (377)
280 COG5107 RNA14 Pre-mRNA 3'-end 96.3 0.61 1.3E-05 47.7 19.4 75 428-504 30-104 (660)
281 PF13176 TPR_7: Tetratricopept 96.3 0.004 8.7E-08 39.9 2.9 30 674-705 1-30 (36)
282 PF04910 Tcf25: Transcriptiona 96.3 0.35 7.7E-06 50.0 18.5 157 510-668 38-223 (360)
283 COG4649 Uncharacterized protei 96.3 0.4 8.6E-06 42.5 15.6 123 490-630 72-195 (221)
284 PF13174 TPR_6: Tetratricopept 96.3 0.0071 1.5E-07 37.8 3.8 33 673-707 1-33 (33)
285 KOG2041 WD40 repeat protein [G 96.2 0.81 1.7E-05 49.4 20.2 175 396-627 693-877 (1189)
286 PF08424 NRDE-2: NRDE-2, neces 96.2 0.36 7.8E-06 49.3 17.8 143 564-708 15-188 (321)
287 PF14561 TPR_20: Tetratricopep 96.1 0.069 1.5E-06 42.6 9.8 66 463-529 10-75 (90)
288 PF13174 TPR_6: Tetratricopept 96.1 0.01 2.3E-07 37.0 4.1 32 443-474 2-33 (33)
289 KOG1464 COP9 signalosome, subu 96.1 0.53 1.2E-05 44.7 16.6 223 418-651 39-287 (440)
290 COG4649 Uncharacterized protei 96.1 0.94 2E-05 40.2 17.0 141 450-612 67-210 (221)
291 PF04910 Tcf25: Transcriptiona 96.0 0.46 1E-05 49.1 17.7 169 350-544 35-225 (360)
292 PRK15180 Vi polysaccharide bio 95.8 1.6 3.4E-05 45.1 19.4 122 418-543 301-422 (831)
293 PF12968 DUF3856: Domain of Un 95.8 0.01 2.2E-07 48.4 3.3 105 57-183 14-132 (144)
294 PF13176 TPR_7: Tetratricopept 95.7 0.018 3.8E-07 36.9 3.9 23 605-627 2-24 (36)
295 KOG2396 HAT (Half-A-TPR) repea 95.7 0.076 1.6E-06 54.9 10.1 88 588-676 91-178 (568)
296 KOG2396 HAT (Half-A-TPR) repea 95.7 3.3 7.1E-05 43.4 33.9 107 599-707 457-564 (568)
297 TIGR02561 HrpB1_HrpK type III 95.6 0.41 8.8E-06 41.5 12.6 99 568-669 10-108 (153)
298 KOG1258 mRNA processing protei 95.4 4.7 0.0001 43.3 38.1 75 290-364 67-142 (577)
299 KOG3824 Huntingtin interacting 95.4 0.059 1.3E-06 51.9 7.7 76 570-645 118-193 (472)
300 PF14561 TPR_20: Tetratricopep 95.4 0.2 4.4E-06 39.9 9.7 68 425-493 7-75 (90)
301 KOG1538 Uncharacterized conser 95.4 3 6.5E-05 44.8 20.4 52 574-628 779-830 (1081)
302 KOG2041 WD40 repeat protein [G 95.4 0.5 1.1E-05 50.8 14.9 110 566-699 794-903 (1189)
303 PF14853 Fis1_TPR_C: Fis1 C-te 95.4 0.074 1.6E-06 37.3 6.2 41 442-483 2-42 (53)
304 smart00028 TPR Tetratricopepti 95.4 0.029 6.4E-07 34.2 4.0 32 673-706 2-33 (34)
305 KOG0890 Protein kinase of the 95.4 4.2 9.1E-05 50.7 24.1 112 510-645 1668-1798(2382)
306 PF04781 DUF627: Protein of un 95.3 0.26 5.7E-06 40.3 9.9 46 656-703 62-107 (111)
307 PRK10941 hypothetical protein; 95.2 0.19 4.1E-06 49.3 10.9 74 568-641 181-254 (269)
308 PF13374 TPR_10: Tetratricopep 95.2 0.031 6.7E-07 37.1 3.9 39 152-190 3-41 (42)
309 KOG1464 COP9 signalosome, subu 95.2 2.4 5.3E-05 40.5 17.2 197 369-597 41-260 (440)
310 KOG3783 Uncharacterized conser 95.1 4 8.7E-05 43.2 20.4 244 423-670 250-523 (546)
311 PF09986 DUF2225: Uncharacteri 95.0 0.49 1.1E-05 44.9 12.5 94 525-633 90-196 (214)
312 PRK10941 hypothetical protein; 94.9 0.25 5.5E-06 48.4 10.8 76 604-681 183-258 (269)
313 PRK13184 pknD serine/threonine 94.9 7.7 0.00017 45.3 23.8 110 357-475 477-586 (932)
314 PF09613 HrpB1_HrpK: Bacterial 94.9 0.73 1.6E-05 40.8 12.2 82 604-687 12-93 (160)
315 KOG3824 Huntingtin interacting 94.7 0.1 2.3E-06 50.3 7.1 68 610-679 124-191 (472)
316 smart00028 TPR Tetratricopepti 94.6 0.065 1.4E-06 32.6 4.0 29 605-633 4-32 (34)
317 PF12968 DUF3856: Domain of Un 94.5 1.7 3.8E-05 35.9 12.5 102 519-630 16-128 (144)
318 KOG1463 26S proteasome regulat 94.5 5.7 0.00012 39.5 20.7 296 359-682 8-328 (411)
319 COG3914 Spy Predicted O-linked 94.4 0.6 1.3E-05 49.6 12.4 125 582-709 45-177 (620)
320 PF14853 Fis1_TPR_C: Fis1 C-te 94.4 0.26 5.7E-06 34.6 6.8 33 606-638 5-37 (53)
321 TIGR02561 HrpB1_HrpK type III 94.2 2.3 4.9E-05 37.0 13.4 74 417-492 21-94 (153)
322 COG4976 Predicted methyltransf 94.0 0.091 2E-06 48.6 5.0 59 577-635 4-62 (287)
323 PF10602 RPN7: 26S proteasome 93.9 0.65 1.4E-05 42.7 10.4 101 441-541 36-142 (177)
324 KOG1538 Uncharacterized conser 93.8 3.6 7.7E-05 44.3 16.6 213 444-700 588-830 (1081)
325 PF09986 DUF2225: Uncharacteri 93.6 1.4 2.9E-05 41.9 12.4 80 512-600 118-197 (214)
326 PF07721 TPR_4: Tetratricopept 93.6 0.067 1.5E-06 31.2 2.3 24 85-108 2-25 (26)
327 KOG0529 Protein geranylgeranyl 93.4 4.4 9.6E-05 41.4 16.0 127 583-710 90-231 (421)
328 COG5191 Uncharacterized conser 93.3 0.12 2.6E-06 50.0 4.5 77 564-640 103-180 (435)
329 COG5159 RPN6 26S proteasome re 93.2 8.5 0.00019 37.3 19.7 206 309-542 10-236 (421)
330 COG4976 Predicted methyltransf 93.2 0.11 2.5E-06 48.0 4.1 60 611-672 4-63 (287)
331 PF10602 RPN7: 26S proteasome 93.1 1.5 3.2E-05 40.3 11.5 104 477-596 37-141 (177)
332 KOG1839 Uncharacterized protei 93.1 1.1 2.4E-05 52.3 12.7 172 444-630 935-1127(1236)
333 KOG3364 Membrane protein invol 92.7 1 2.3E-05 38.2 8.8 75 601-677 31-110 (149)
334 KOG1839 Uncharacterized protei 92.6 2.1 4.5E-05 50.2 13.9 172 355-543 932-1130(1236)
335 KOG3807 Predicted membrane pro 92.6 12 0.00025 37.1 18.8 191 417-642 195-402 (556)
336 PF04053 Coatomer_WDAD: Coatom 92.5 6 0.00013 42.2 16.6 127 453-628 273-399 (443)
337 PF04053 Coatomer_WDAD: Coatom 92.5 5.8 0.00012 42.4 16.4 153 419-627 274-427 (443)
338 COG5107 RNA14 Pre-mRNA 3'-end 92.4 15 0.00033 38.1 31.8 134 569-706 398-534 (660)
339 PRK15180 Vi polysaccharide bio 92.4 0.77 1.7E-05 47.3 9.2 123 580-706 301-423 (831)
340 PF13041 PPR_2: PPR repeat fam 92.4 0.42 9.2E-06 33.1 5.4 41 207-247 6-46 (50)
341 COG3914 Spy Predicted O-linked 92.4 12 0.00025 40.3 17.8 79 568-646 101-186 (620)
342 KOG3807 Predicted membrane pro 92.1 13 0.00029 36.7 19.1 134 363-526 192-325 (556)
343 KOG1310 WD40 repeat protein [G 92.1 0.38 8.2E-06 50.1 6.6 103 567-671 373-478 (758)
344 COG5159 RPN6 26S proteasome re 92.0 13 0.00027 36.2 20.4 284 359-669 7-316 (421)
345 COG3629 DnrI DNA-binding trans 91.7 5.1 0.00011 39.4 13.6 64 568-631 153-216 (280)
346 KOG1310 WD40 repeat protein [G 91.6 0.58 1.2E-05 48.8 7.3 89 616-706 388-477 (758)
347 KOG3364 Membrane protein invol 91.5 3.9 8.5E-05 34.8 10.7 67 441-507 32-102 (149)
348 PF13374 TPR_10: Tetratricopep 91.3 0.37 8E-06 31.7 4.0 29 673-703 3-31 (42)
349 KOG4814 Uncharacterized conser 91.2 1.7 3.7E-05 46.6 10.4 102 514-631 356-457 (872)
350 KOG0529 Protein geranylgeranyl 91.2 15 0.00032 37.8 16.5 136 527-684 90-241 (421)
351 PF04190 DUF410: Protein of un 91.2 16 0.00036 35.9 20.9 104 418-537 2-115 (260)
352 PF12862 Apc5: Anaphase-promot 90.8 3.5 7.7E-05 33.2 10.0 59 487-545 9-74 (94)
353 KOG2422 Uncharacterized conser 90.4 18 0.00039 38.8 16.7 162 419-599 251-450 (665)
354 COG1747 Uncharacterized N-term 90.2 28 0.0006 36.9 25.2 99 351-470 62-160 (711)
355 PF10255 Paf67: RNA polymerase 89.4 1.2 2.7E-05 46.1 7.6 100 90-215 128-227 (404)
356 COG5191 Uncharacterized conser 89.3 0.77 1.7E-05 44.7 5.5 86 590-677 95-181 (435)
357 PF12854 PPR_1: PPR repeat 89.2 0.9 1.9E-05 28.5 4.1 31 298-328 3-33 (34)
358 KOG2581 26S proteasome regulat 89.1 29 0.00063 35.6 16.9 108 513-636 170-281 (493)
359 KOG4814 Uncharacterized conser 89.0 3.3 7.2E-05 44.5 10.3 90 574-665 360-455 (872)
360 KOG1463 26S proteasome regulat 88.9 27 0.00059 34.9 22.7 174 445-634 132-319 (411)
361 KOG3783 Uncharacterized conser 88.8 37 0.00079 36.4 23.6 217 350-599 262-522 (546)
362 PF11207 DUF2989: Protein of u 88.2 6.1 0.00013 36.5 10.3 77 492-588 122-198 (203)
363 PF11207 DUF2989: Protein of u 87.7 19 0.00041 33.4 13.1 72 423-496 123-198 (203)
364 PF07720 TPR_3: Tetratricopept 87.7 1.6 3.4E-05 27.9 4.4 33 673-707 2-36 (36)
365 PF12862 Apc5: Anaphase-promot 87.7 4.6 0.0001 32.5 8.5 56 451-506 8-71 (94)
366 PF07720 TPR_3: Tetratricopept 87.3 2.1 4.5E-05 27.3 4.9 31 442-472 2-34 (36)
367 COG2912 Uncharacterized conser 87.2 4.1 8.8E-05 39.5 9.0 70 571-640 184-253 (269)
368 COG4941 Predicted RNA polymera 87.0 32 0.00069 34.4 14.8 92 583-677 311-404 (415)
369 PF15015 NYD-SP12_N: Spermatog 86.9 4.1 8.8E-05 41.6 9.0 106 519-628 183-288 (569)
370 PF07721 TPR_4: Tetratricopept 86.5 0.96 2.1E-05 26.3 2.9 24 673-698 2-25 (26)
371 KOG2422 Uncharacterized conser 86.1 19 0.00042 38.6 13.8 183 273-473 248-451 (665)
372 COG2912 Uncharacterized conser 86.0 5.2 0.00011 38.8 9.0 62 417-480 192-253 (269)
373 COG3629 DnrI DNA-binding trans 85.9 3.6 7.7E-05 40.5 8.0 65 601-667 152-216 (280)
374 PF13041 PPR_2: PPR repeat fam 85.1 4 8.6E-05 28.1 6.0 29 478-506 5-33 (50)
375 PF10373 EST1_DNA_bind: Est1 D 85.0 3.4 7.3E-05 41.2 8.0 62 587-648 1-62 (278)
376 PF12854 PPR_1: PPR repeat 84.0 2.5 5.5E-05 26.4 4.1 27 567-593 6-32 (34)
377 KOG4014 Uncharacterized conser 83.5 27 0.00058 31.7 11.5 114 566-684 32-156 (248)
378 PF10516 SHNi-TPR: SHNi-TPR; 83.3 2.1 4.5E-05 27.6 3.5 35 152-186 2-36 (38)
379 PF00244 14-3-3: 14-3-3 protei 83.3 46 0.00099 32.2 16.5 62 357-433 3-64 (236)
380 PRK11619 lytic murein transgly 82.5 93 0.002 35.2 33.8 243 436-702 124-374 (644)
381 TIGR00756 PPR pentatricopeptid 82.4 2.6 5.6E-05 26.0 3.9 30 209-238 5-34 (35)
382 PF10516 SHNi-TPR: SHNi-TPR; 81.6 2.5 5.5E-05 27.3 3.4 30 673-704 2-31 (38)
383 COG4941 Predicted RNA polymera 81.6 62 0.0013 32.5 16.1 163 374-544 214-397 (415)
384 PF04190 DUF410: Protein of un 81.0 60 0.0013 32.0 19.5 22 484-505 149-170 (260)
385 KOG0128 RNA-binding protein SA 79.7 1.2E+02 0.0025 34.6 24.3 120 418-542 91-220 (881)
386 PF15015 NYD-SP12_N: Spermatog 78.9 17 0.00038 37.3 9.9 58 605-664 231-288 (569)
387 PF10579 Rapsyn_N: Rapsyn N-te 78.3 13 0.00029 28.4 6.8 22 452-473 17-38 (80)
388 PF10579 Rapsyn_N: Rapsyn N-te 77.5 14 0.00031 28.2 6.8 49 524-591 18-66 (80)
389 PF10373 EST1_DNA_bind: Est1 D 76.3 6.1 0.00013 39.4 6.3 62 621-684 1-62 (278)
390 KOG2581 26S proteasome regulat 75.8 1E+02 0.0022 31.9 18.3 106 357-475 171-281 (493)
391 COG3947 Response regulator con 75.2 13 0.00029 36.2 7.6 59 570-628 281-339 (361)
392 PF01535 PPR: PPR repeat; Int 75.0 4.7 0.0001 24.0 3.2 27 570-596 2-28 (31)
393 PF04348 LppC: LppC putative l 74.1 1 2.2E-05 49.4 0.0 55 481-536 29-85 (536)
394 KOG0546 HSP90 co-chaperone CPR 73.8 9.1 0.0002 38.4 6.3 84 568-651 275-358 (372)
395 smart00386 HAT HAT (Half-A-TPR 73.5 7.3 0.00016 23.4 3.9 27 583-609 2-28 (33)
396 PF09670 Cas_Cas02710: CRISPR- 73.3 86 0.0019 32.9 13.9 60 446-505 136-198 (379)
397 TIGR03504 FimV_Cterm FimV C-te 73.0 5.9 0.00013 26.6 3.4 23 446-468 4-26 (44)
398 PF00244 14-3-3: 14-3-3 protei 72.7 95 0.0021 30.0 14.3 61 444-504 4-65 (236)
399 KOG0276 Vesicle coat complex C 72.4 58 0.0012 35.4 12.0 26 569-594 667-692 (794)
400 PRK11619 lytic murein transgly 71.8 1.8E+02 0.004 32.9 33.5 211 448-700 248-465 (644)
401 PF13812 PPR_3: Pentatricopept 71.7 8.8 0.00019 23.4 4.0 30 207-236 4-33 (34)
402 PF12739 TRAPPC-Trs85: ER-Golg 71.7 1.4E+02 0.0031 31.7 16.2 27 396-433 209-235 (414)
403 smart00386 HAT HAT (Half-A-TPR 71.5 11 0.00024 22.6 4.4 24 656-679 5-28 (33)
404 COG4455 ImpE Protein of avirul 71.5 18 0.0004 33.8 7.3 62 575-636 8-69 (273)
405 COG5187 RPN7 26S proteasome re 70.8 81 0.0018 31.0 11.6 101 441-541 115-221 (412)
406 COG3947 Response regulator con 70.6 16 0.00034 35.8 6.9 54 447-501 285-338 (361)
407 TIGR03504 FimV_Cterm FimV C-te 70.2 9.7 0.00021 25.5 3.9 25 572-596 3-27 (44)
408 PRK13184 pknD serine/threonine 68.5 2.5E+02 0.0055 33.3 31.5 105 210-335 481-585 (932)
409 KOG2063 Vacuolar assembly/sort 68.4 2.4E+02 0.0052 33.0 17.5 180 396-596 505-712 (877)
410 KOG4279 Serine/threonine prote 67.4 56 0.0012 36.4 10.9 70 455-527 257-335 (1226)
411 TIGR00756 PPR pentatricopeptid 67.3 12 0.00026 22.8 4.0 26 571-596 3-28 (35)
412 COG1747 Uncharacterized N-term 65.6 2E+02 0.0043 30.9 24.3 187 438-648 63-251 (711)
413 PF04348 LppC: LppC putative l 65.5 2 4.4E-05 47.1 0.0 116 425-541 8-127 (536)
414 KOG1920 IkappaB kinase complex 65.4 3E+02 0.0065 33.0 19.9 25 516-540 1003-1027(1265)
415 PF09670 Cas_Cas02710: CRISPR- 65.0 1.1E+02 0.0023 32.2 12.6 62 570-631 133-198 (379)
416 PF01535 PPR: PPR repeat; Int 64.9 10 0.00023 22.4 3.2 19 483-501 7-25 (31)
417 KOG0686 COP9 signalosome, subu 64.8 50 0.0011 34.0 9.4 99 512-629 150-256 (466)
418 PF11817 Foie-gras_1: Foie gra 64.5 70 0.0015 31.2 10.6 61 568-628 178-244 (247)
419 smart00299 CLH Clathrin heavy 62.9 1E+02 0.0022 26.7 15.8 34 453-487 19-52 (140)
420 COG4259 Uncharacterized protei 62.2 8.5 0.00018 30.7 2.8 38 72-109 57-97 (121)
421 smart00299 CLH Clathrin heavy 62.2 1E+02 0.0023 26.6 14.8 51 483-536 14-64 (140)
422 PF04097 Nic96: Nup93/Nic96; 62.2 1.2E+02 0.0026 34.3 13.1 38 310-349 266-303 (613)
423 PF13812 PPR_3: Pentatricopept 62.1 19 0.00041 21.9 4.1 27 570-596 3-29 (34)
424 PF12739 TRAPPC-Trs85: ER-Golg 61.1 2.3E+02 0.005 30.2 16.3 172 357-543 210-401 (414)
425 COG5536 BET4 Protein prenyltra 60.8 1.5E+02 0.0032 29.1 11.3 133 565-699 105-256 (328)
426 KOG0567 HEAT repeat-containing 60.4 1.7E+02 0.0037 28.5 16.6 197 456-666 64-261 (289)
427 PF11817 Foie-gras_1: Foie gra 59.5 1.8E+02 0.0039 28.4 14.7 27 444-470 13-39 (247)
428 PF08311 Mad3_BUB1_I: Mad3/BUB 59.4 1.1E+02 0.0025 26.1 12.9 85 526-629 40-126 (126)
429 KOG2114 Vacuolar assembly/sort 59.2 1.1E+02 0.0024 34.8 11.5 207 447-702 340-549 (933)
430 cd02682 MIT_AAA_Arch MIT: doma 58.8 71 0.0015 24.4 7.1 23 606-628 10-32 (75)
431 COG4455 ImpE Protein of avirul 57.9 1.7E+02 0.0037 27.7 12.5 58 449-507 9-66 (273)
432 PF10255 Paf67: RNA polymerase 57.3 21 0.00046 37.3 5.6 62 568-630 122-192 (404)
433 PF06957 COPI_C: Coatomer (COP 57.1 36 0.00077 35.8 7.2 30 154-183 207-236 (422)
434 KOG0546 HSP90 co-chaperone CPR 57.0 11 0.00023 37.9 3.3 106 571-678 225-349 (372)
435 PRK12798 chemotaxis protein; R 56.2 2.6E+02 0.0057 29.3 25.6 206 354-594 111-321 (421)
436 KOG2062 26S proteasome regulat 55.2 3.6E+02 0.0078 30.6 21.1 294 314-648 369-691 (929)
437 KOG4014 Uncharacterized conser 54.9 1.7E+02 0.0037 26.8 16.1 110 396-524 35-156 (248)
438 KOG0276 Vesicle coat complex C 54.6 86 0.0019 34.2 9.4 132 443-628 616-747 (794)
439 KOG4521 Nuclear pore complex, 53.6 4.6E+02 0.01 31.5 15.3 187 301-506 919-1133(1480)
440 TIGR03362 VI_chp_7 type VI sec 53.3 2.5E+02 0.0055 28.3 15.3 62 517-597 218-279 (301)
441 PF06957 COPI_C: Coatomer (COP 52.8 1.7E+02 0.0037 30.9 11.3 75 308-385 124-233 (422)
442 PF08311 Mad3_BUB1_I: Mad3/BUB 52.8 1.5E+02 0.0032 25.4 12.5 79 455-539 40-126 (126)
443 PF09797 NatB_MDM20: N-acetylt 52.3 95 0.002 32.4 9.7 48 419-467 196-243 (365)
444 PF07163 Pex26: Pex26 protein; 51.9 2.4E+02 0.0052 27.9 11.1 118 418-536 47-182 (309)
445 PF14863 Alkyl_sulf_dimr: Alky 49.4 57 0.0012 28.5 6.2 51 440-491 69-119 (141)
446 KOG4521 Nuclear pore complex, 48.9 4.3E+02 0.0094 31.7 14.2 184 512-704 920-1133(1480)
447 PF11846 DUF3366: Domain of un 47.3 62 0.0013 30.1 6.8 48 585-633 128-175 (193)
448 PF13226 DUF4034: Domain of un 47.2 2.2E+02 0.0047 28.3 10.5 67 621-687 62-148 (277)
449 PF13226 DUF4034: Domain of un 47.1 2.9E+02 0.0062 27.4 11.3 116 519-653 7-150 (277)
450 PF09205 DUF1955: Domain of un 47.1 67 0.0015 27.6 5.9 30 670-701 118-147 (161)
451 PF11846 DUF3366: Domain of un 47.0 63 0.0014 30.1 6.7 44 623-669 132-175 (193)
452 PF14863 Alkyl_sulf_dimr: Alky 46.0 79 0.0017 27.7 6.6 47 605-651 73-119 (141)
453 KOG0687 26S proteasome regulat 45.0 3.5E+02 0.0075 27.4 14.0 106 510-631 102-210 (393)
454 COG5536 BET4 Protein prenyltra 44.3 2.5E+02 0.0055 27.6 10.0 138 493-648 91-239 (328)
455 KOG0687 26S proteasome regulat 44.3 3.5E+02 0.0077 27.3 14.5 101 441-541 104-210 (393)
456 PF09797 NatB_MDM20: N-acetylt 42.9 1.1E+02 0.0023 32.1 8.3 44 584-627 199-242 (365)
457 PRK12798 chemotaxis protein; R 42.8 4.3E+02 0.0093 27.8 22.3 172 440-632 111-287 (421)
458 PF09205 DUF1955: Domain of un 42.6 1.5E+02 0.0032 25.6 7.3 51 579-629 97-147 (161)
459 KOG1497 COP9 signalosome, subu 42.6 3.7E+02 0.008 27.1 13.8 196 213-433 11-211 (399)
460 cd02680 MIT_calpain7_2 MIT: do 41.1 52 0.0011 25.1 4.1 18 525-542 19-36 (75)
461 KOG1920 IkappaB kinase complex 40.7 7.4E+02 0.016 30.0 20.7 17 214-230 687-703 (1265)
462 cd02680 MIT_calpain7_2 MIT: do 40.7 44 0.00095 25.5 3.6 18 614-631 18-35 (75)
463 PF10952 DUF2753: Protein of u 40.0 1.2E+02 0.0026 25.6 6.2 65 571-635 4-87 (140)
464 KOG4459 Membrane-associated pr 39.8 4.5E+02 0.0097 27.9 11.7 88 604-701 135-222 (471)
465 COG5187 RPN7 26S proteasome re 39.8 3.9E+02 0.0084 26.5 14.7 30 567-596 114-143 (412)
466 PF04090 RNA_pol_I_TF: RNA pol 39.4 3.1E+02 0.0068 25.6 9.7 118 440-579 40-189 (199)
467 KOG2561 Adaptor protein NUB1, 37.8 1.8E+02 0.0039 30.5 8.4 25 676-702 271-295 (568)
468 KOG2063 Vacuolar assembly/sort 36.4 7.8E+02 0.017 29.0 18.6 166 443-630 506-712 (877)
469 COG3107 LppC Putative lipoprot 36.3 6E+02 0.013 27.7 15.1 106 425-531 47-155 (604)
470 cd02679 MIT_spastin MIT: domai 36.2 64 0.0014 24.9 4.0 16 615-630 21-36 (79)
471 cd02682 MIT_AAA_Arch MIT: doma 35.7 1.7E+02 0.0037 22.4 6.1 28 569-596 7-34 (75)
472 COG4259 Uncharacterized protei 35.3 2.2E+02 0.0048 23.1 6.7 39 601-639 71-109 (121)
473 KOG0686 COP9 signalosome, subu 35.2 5.5E+02 0.012 26.9 14.1 93 568-664 150-255 (466)
474 PF01239 PPTA: Protein prenylt 35.2 1E+02 0.0022 18.5 4.8 27 658-684 3-29 (31)
475 PRK09687 putative lyase; Provi 35.2 4.7E+02 0.01 26.1 27.6 236 423-707 22-267 (280)
476 PHA02537 M terminase endonucle 34.6 4.2E+02 0.0092 25.4 10.1 19 616-634 192-210 (230)
477 PHA02537 M terminase endonucle 33.0 58 0.0012 31.2 4.0 33 513-545 170-211 (230)
478 COG3107 LppC Putative lipoprot 32.8 6.9E+02 0.015 27.3 15.1 185 454-675 40-240 (604)
479 smart00671 SEL1 Sel1-like repe 32.6 79 0.0017 19.3 3.5 29 673-703 2-34 (36)
480 PF12921 ATP13: Mitochondrial 31.2 3.4E+02 0.0073 23.2 9.5 78 442-519 3-95 (126)
481 PF08238 Sel1: Sel1 repeat; I 31.0 93 0.002 19.5 3.7 31 673-703 2-37 (39)
482 TIGR02710 CRISPR-associated pr 30.5 6.5E+02 0.014 26.3 12.6 54 574-627 136-196 (380)
483 KOG4279 Serine/threonine prote 29.4 1.8E+02 0.0039 32.7 7.3 131 368-507 256-397 (1226)
484 cd02677 MIT_SNX15 MIT: domain 29.3 65 0.0014 24.6 3.0 16 649-666 19-34 (75)
485 PF05053 Menin: Menin; InterP 29.2 2.4E+02 0.0052 30.8 8.0 62 601-664 276-344 (618)
486 cd02679 MIT_spastin MIT: domai 28.0 1.4E+02 0.0031 23.0 4.7 17 453-469 20-36 (79)
487 PF04212 MIT: MIT (microtubule 27.2 1.3E+02 0.0028 22.3 4.4 23 608-630 11-33 (69)
488 KOG4151 Myosin assembly protei 25.8 2.2E+02 0.0048 32.3 7.3 106 519-642 60-167 (748)
489 PF02184 HAT: HAT (Half-A-TPR) 25.4 1.5E+02 0.0033 18.3 3.5 23 584-607 3-25 (32)
490 KOG4151 Myosin assembly protei 25.4 2.1E+02 0.0045 32.5 7.1 100 574-675 59-164 (748)
491 COG3014 Uncharacterized protei 24.3 7.8E+02 0.017 25.2 12.4 177 425-609 40-254 (449)
492 smart00777 Mad3_BUB1_I Mad3/BU 23.9 2.8E+02 0.0062 23.7 6.2 25 512-536 99-123 (125)
493 PF10938 YfdX: YfdX protein; 23.9 5.2E+02 0.011 23.0 10.1 115 516-630 6-145 (155)
494 PRK15490 Vi polysaccharide bio 23.9 3.2E+02 0.0069 30.3 8.1 78 581-662 21-98 (578)
495 PRK15490 Vi polysaccharide bio 23.1 4.6E+02 0.01 29.1 9.1 81 613-699 19-99 (578)
496 cd02681 MIT_calpain7_1 MIT: do 22.7 3.2E+02 0.007 20.9 5.7 31 154-184 9-39 (76)
497 cd02681 MIT_calpain7_1 MIT: do 22.7 1.7E+02 0.0036 22.5 4.1 20 611-630 15-34 (76)
498 KOG2758 Translation initiation 22.3 8.3E+02 0.018 24.8 17.8 79 425-505 114-196 (432)
499 KOG0396 Uncharacterized conser 21.5 9.1E+02 0.02 24.9 11.3 57 163-233 164-220 (389)
500 KOG2561 Adaptor protein NUB1, 21.4 4.7E+02 0.01 27.6 8.1 29 568-596 267-295 (568)
No 1
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=100.00 E-value=8.9e-67 Score=535.28 Aligned_cols=670 Identities=41% Similarity=0.579 Sum_probs=599.1
Q ss_pred cCccccccccccccccccccCcccccCCCCChHHHhhhhhhhccCCHHHHHHHhhhHhhhcCCHHHHHhhhhcCCccccc
Q 035707 37 SSSESLATRDYSASGFSSRAGEMDAKVDNSNIEEAESSLRESGYLNYEEARALLGRLEFQKGNIEAALHVFEGIDVAAVT 116 (713)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~l~~~~~~a~~llg~~~~~~g~~~~Al~~~~~~~~~~~~ 116 (713)
-.++.-++|+|++++.+...+++..+++.+.+.||+..+++.+++++++++.+.|+..|++||.++|+.+|+++++....
T Consensus 55 ~~~e~~ai~~~~~s~i~~~~~~~~~~~~~~~l~Ea~~il~~glsle~ee~~~~s~~~~~qr~~~e~al~vFe~~~i~~~~ 134 (799)
T KOG4162|consen 55 CGEERKAIRNFSASGIDNQYSENLPLLDLRLLAEAEAILREGLSLEYEEARALSGRLEYQRGNDEAALRVFEGIDILAIT 134 (799)
T ss_pred ccHHHHHHHHHHHhhcccccccccchhhhhhHHHHHHHHhhhcccchhhhhhhhhhHHHhhcCcHHHHHHhcccchhHHH
Confidence 33667778999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred hhhhhhhhhh-ccccccCCC----CCCCCCcchhHHHHHHHHHHHhhhhhhccCchHHHHHHHHHHHHHHHHhcCCCCCC
Q 035707 117 SRMKVSLSRR-CDQNRRRSQ----SDAAPPMSMHAVSLLVEAIFLKTKSLQGLGRFEEACQSCKVILDTVEHALPEGLPG 191 (713)
Q Consensus 117 ~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~e~~~~~~~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~ 191 (713)
.+....+... ...-+.+.+ .....+++.|.+.+..++++++.+.+.+.|++.||+..|+.++++++...+.|.++
T Consensus 135 ~~~e~~i~~~s~~s~~~~s~~~~a~~p~~~~s~~~~~Le~~l~~lk~k~L~~~~~iqea~e~cr~~L~~ve~~~t~~~~~ 214 (799)
T KOG4162|consen 135 YLQELEIVQNSNSSLRQRSKASFAIEPSTVMSAHGAILEAELIKLKAKSLKRLGRIQEAAEECRSVLDIVETKATQGSKD 214 (799)
T ss_pred HHHHHHHHhccCccccCCCccccccCCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc
Confidence 7766655544 222222221 12225577888999999999999999999999999999999999999999999998
Q ss_pred CCCcccchHHHHHHHHHHhHHHHHhcCChhHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHhhcCCCCCCCcccccccc
Q 035707 192 NHSIDCKLQETLNKAVELLPELYKLAGDPDETILSYRRALLYYWNLDIETTARIEKKFAVFLLYSGTDASPPNLRLQMEL 271 (713)
Q Consensus 192 ~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~i~~~~a~~ll~~~~~~~~~~~~~~~~~ 271 (713)
+...+-++++++..+++++|.+|...+.+++++..|++++..+|+.++.+.+++++.++.+..+++.+.. .+......
T Consensus 215 ~~s~~~~l~~vl~~~~~~~~~Lw~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~e 292 (799)
T KOG4162|consen 215 TESGALKLQEVLSRAVELLPILWKKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEE 292 (799)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHhcCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHh
Confidence 5433348999999999999999999999999999999999999999999999999999999888888753 44567778
Q ss_pred cccCCchhHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcc--
Q 035707 272 SFVPRNNIEEAVLLLLILLKKIVLGKIEWDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGE-- 349 (713)
Q Consensus 272 ~~~~~~~~eeA~~ll~~~~~~~~l~~~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~-- 349 (713)
++.+++|+++++..++..+++.....+.||+.++++|++++.++|+++.+.++||+++++.+.+.++|+++++||.++
T Consensus 293 s~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~ 372 (799)
T KOG4162|consen 293 SLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGS 372 (799)
T ss_pred hccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhcc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ---------------cCCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhccccccc
Q 035707 350 ---------------ENSDCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVS 414 (713)
Q Consensus 350 ---------------~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~ 414 (713)
.+|+++..++..+++|.+.-.+.++++.+.++++........++.+.++..+|.+|+.+.+.+..
T Consensus 373 ~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~ 452 (799)
T KOG4162|consen 373 DSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANL 452 (799)
T ss_pred chHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCC
Confidence 45899999999999999988887799999999999777777788899999999999999999999
Q ss_pred HHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHH
Q 035707 415 DSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFAD 494 (713)
Q Consensus 415 ~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~ 494 (713)
.+.+.....++++.+++++ +.+|+|+.+.+.++.-|..+++.+.|.++.+++++.++.+...+|..++.++..++++.+
T Consensus 453 ~seR~~~h~kslqale~av-~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~ 531 (799)
T KOG4162|consen 453 KSERDALHKKSLQALEEAV-QFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKE 531 (799)
T ss_pred hHHHHHHHHHHHHHHHHHH-hcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHH
Confidence 9999999999999999999 999999999999999999999999999999999999777666999999999999999999
Q ss_pred HHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhh--------------------
Q 035707 495 AESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKN-------------------- 554 (713)
Q Consensus 495 A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~-------------------- 554 (713)
|+.+.+.+++..| ++.......+.+....++.++|+.+....+......+.+...+..
T Consensus 532 Al~vvd~al~E~~--~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a 609 (799)
T KOG4162|consen 532 ALDVVDAALEEFG--DNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDA 609 (799)
T ss_pred HHHHHHHHHHHhh--hhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCccccccc
Confidence 9999999999998 677788888888888999999999999999887633322211100
Q ss_pred ---------hhhh----------------cccCC--CccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHH
Q 035707 555 ---------LVKN----------------RQNHD--RSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHS 607 (713)
Q Consensus 555 ---------~~~~----------------~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 607 (713)
+... ...++ .......|...+..+...+..++|..|+.++-.++|..+..|+.
T Consensus 610 ~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~ 689 (799)
T KOG4162|consen 610 ISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYL 689 (799)
T ss_pred chhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHH
Confidence 0000 00001 11235678899999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q 035707 608 TGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAG 687 (713)
Q Consensus 608 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 687 (713)
.|.++...|++.+|.+.|..++.++|+++++...+|.++.+.|+..++++..++..+++++|.++++|+.+|.++...|+
T Consensus 690 ~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd 769 (799)
T KOG4162|consen 690 RGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGD 769 (799)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999999999999986666669999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHccccCCCCCCCC
Q 035707 688 ASALEAVECFEAAALLEESAPVEPFR 713 (713)
Q Consensus 688 ~~~~~A~~~~~~a~~l~p~~~~~~f~ 713 (713)
.++|.+||+.|+++++++|+.||+
T Consensus 770 --~~~Aaecf~aa~qLe~S~PV~pFs 793 (799)
T KOG4162|consen 770 --SKQAAECFQAALQLEESNPVLPFS 793 (799)
T ss_pred --hHHHHHHHHHHHhhccCCCccccc
Confidence 999999999999999999999996
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-45 Score=365.60 Aligned_cols=446 Identities=19% Similarity=0.183 Sum_probs=378.0
Q ss_pred HHHHHHHhhhHhhhcCCHHHHHhhhhcCCccccchhhhhhhhhhccccccCCCCCCCCCcchhHHHHHHHHHHHhhhhhh
Q 035707 83 YEEARALLGRLEFQKGNIEAALHVFEGIDVAAVTSRMKVSLSRRCDQNRRRSQSDAAPPMSMHAVSLLVEAIFLKTKSLQ 162 (713)
Q Consensus 83 ~~~a~~llg~~~~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 162 (713)
..+.+.-|+.-.|+.|||++|++....+-.++-..+ . ..++++++|.
T Consensus 47 ~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~-------------~--------------~llll~ai~~------ 93 (966)
T KOG4626|consen 47 GSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNT-------------E--------------RLLLLSAIFF------ 93 (966)
T ss_pred cchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcc-------------c--------------ceeeehhhhh------
Confidence 345588899999999999999998876532221111 0 1233344443
Q ss_pred ccCchHHHHHHHHHHHHHHHHhcCCCCCCCCCcccchHHHHHHHHHHhHHHHHhcCChhHHHHHHHHHhcccCCCChhHH
Q 035707 163 GLGRFEEACQSCKVILDTVEHALPEGLPGNHSIDCKLQETLNKAVELLPELYKLAGDPDETILSYRRALLYYWNLDIETT 242 (713)
Q Consensus 163 ~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~ 242 (713)
+..+++...+--...+ +.+.....++..++.+|...|++++|+..|+.+++..|+
T Consensus 94 q~~r~d~s~a~~~~a~-------------------r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~------ 148 (966)
T KOG4626|consen 94 QGSRLDKSSAGSLLAI-------------------RKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPK------ 148 (966)
T ss_pred cccchhhhhhhhhhhh-------------------hccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch------
Confidence 3345555432211111 223335668888999999999999999999999987433
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcccccccccccCCchhHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCcHHHHH
Q 035707 243 ARIEKKFAVFLLYSGTDASPPNLRLQMELSFVPRNNIEEAVLLLLILLKKIVLGKIEWDPSIIDHLSFALSVSGELWTLA 322 (713)
Q Consensus 243 ~~i~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~eeA~~ll~~~~~~~~l~~~~~~~~~~~~l~~a~~~~g~~~~a~ 322 (713)
....+..++.+|...|+.+.|.
T Consensus 149 ----------------------------------------------------------fida~inla~al~~~~~~~~a~ 170 (966)
T KOG4626|consen 149 ----------------------------------------------------------FIDAYINLAAALVTQGDLELAV 170 (966)
T ss_pred ----------------------------------------------------------hhHHHhhHHHHHHhcCCCcccH
Confidence 1233456677788888888888
Q ss_pred HHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHH
Q 035707 323 HQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLG 402 (713)
Q Consensus 323 ~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg 402 (713)
+.|.+++. .+|+...+...+|.+.-..|++. +|..+|.+++. ..|.-. .+|..||
T Consensus 171 ~~~~~alq-------------------lnP~l~ca~s~lgnLlka~Grl~-ea~~cYlkAi~-~qp~fA----iawsnLg 225 (966)
T KOG4626|consen 171 QCFFEALQ-------------------LNPDLYCARSDLGNLLKAEGRLE-EAKACYLKAIE-TQPCFA----IAWSNLG 225 (966)
T ss_pred HHHHHHHh-------------------cCcchhhhhcchhHHHHhhcccc-hhHHHHHHHHh-hCCcee----eeehhcc
Confidence 88887776 46888888888898999999999 99999999999 788777 8999999
Q ss_pred HHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHH
Q 035707 403 VLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLL 482 (713)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~l 482 (713)
.++ ..+|+...|+..|++|+ +++|+.++++++||.+|...+.++.|+.+|.+++...|.+. .++-++
T Consensus 226 ~~f-----------~~~Gei~~aiq~y~eAv-kldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A-~a~gNl 292 (966)
T KOG4626|consen 226 CVF-----------NAQGEIWLAIQHYEEAV-KLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHA-VAHGNL 292 (966)
T ss_pred hHH-----------hhcchHHHHHHHHHHhh-cCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcch-hhccce
Confidence 999 77888899999999999 99999999999999999999999999999999999999988 999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccC
Q 035707 483 ARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNH 562 (713)
Q Consensus 483 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 562 (713)
|.+|..+|..+-|+..|+++++..| ..+.++.++|..+...|+..+|+.+|.+++.+.|.+
T Consensus 293 a~iYyeqG~ldlAI~~Ykral~~~P--~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h----------------- 353 (966)
T KOG4626|consen 293 ACIYYEQGLLDLAIDTYKRALELQP--NFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNH----------------- 353 (966)
T ss_pred EEEEeccccHHHHHHHHHHHHhcCC--CchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCcc-----------------
Confidence 9999999999999999999999998 788899999999999999999999999999998766
Q ss_pred CCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 035707 563 DRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSI 642 (713)
Q Consensus 563 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 642 (713)
+++.++||.+|..+|.+++|...|.++++..|..+.++.+||.+|..+|++++|+.+|+.++++.|..++++.++
T Consensus 354 -----adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~Nm 428 (966)
T KOG4626|consen 354 -----ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNM 428 (966)
T ss_pred -----HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhc
Confidence 889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCCCCC
Q 035707 643 ARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALLEESAPVE 710 (713)
Q Consensus 643 a~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~~~~ 710 (713)
|.+|..+|+.+ .|++.|.+|+.++|..++++.+||.+|...|+ ..+|+..|+.+++++||.|.+
T Consensus 429 Gnt~ke~g~v~--~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGn--i~~AI~sY~~aLklkPDfpdA 492 (966)
T KOG4626|consen 429 GNTYKEMGDVS--AAIQCYTRAIQINPTFAEAHSNLASIYKDSGN--IPEAIQSYRTALKLKPDFPDA 492 (966)
T ss_pred chHHHHhhhHH--HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCC--cHHHHHHHHHHHccCCCCchh
Confidence 99999999998 99999999999999999999999999999999 999999999999999999875
No 3
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-42 Score=345.59 Aligned_cols=451 Identities=18% Similarity=0.167 Sum_probs=394.7
Q ss_pred CcccccCCCCChHHHhhhhhhhcc--CCHHHHHHHhhhHhhhcCCHHHHHhhhhcCCccccchhhhhhhhhhccccccCC
Q 035707 57 GEMDAKVDNSNIEEAESSLRESGY--LNYEEARALLGRLEFQKGNIEAALHVFEGIDVAAVTSRMKVSLSRRCDQNRRRS 134 (713)
Q Consensus 57 ~~~~~~~~~~~~~~A~~~l~~~l~--~~~~~a~~llg~~~~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (713)
.-....++.|||++|+....-+.. ..+.+-..+++.++||..+++....--... .+..
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a------~r~~-------------- 112 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLA------IRKN-------------- 112 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhh------hhcc--------------
Confidence 344567889999999999888874 348889999999999999998865432211 1111
Q ss_pred CCCCCCCcchhHHHHHHHHHHHhhhhhhccCchHHHHHHHHHHHHHHHHhcCCCCCCCCCcccchHHHHHHHHHHhHHHH
Q 035707 135 QSDAAPPMSMHAVSLLVEAIFLKTKSLQGLGRFEEACQSCKVILDTVEHALPEGLPGNHSIDCKLQETLNKAVELLPELY 214 (713)
Q Consensus 135 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~ 214 (713)
.-..|+|-..|..+-..|++.+|...++..+... +.+..|+..++.++
T Consensus 113 -------------~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-------------------p~fida~inla~al 160 (966)
T KOG4626|consen 113 -------------PQGAEAYSNLANILKERGQLQDALALYRAAIELK-------------------PKFIDAYINLAAAL 160 (966)
T ss_pred -------------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-------------------chhhHHHhhHHHHH
Confidence 1234788888999999999999999999887732 12445888899999
Q ss_pred HhcCChhHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHhhcCCCCCCCcccccccccccCCchhHHHHHHHHHHHHHHH
Q 035707 215 KLAGDPDETILSYRRALLYYWNLDIETTARIEKKFAVFLLYSGTDASPPNLRLQMELSFVPRNNIEEAVLLLLILLKKIV 294 (713)
Q Consensus 215 ~~~g~~~eA~~~~~~al~~~~~~~~~~~~~i~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~eeA~~ll~~~~~~~~ 294 (713)
+.+|+.+.|..+|..+++.+|.+ +.
T Consensus 161 ~~~~~~~~a~~~~~~alqlnP~l-----------------~c-------------------------------------- 185 (966)
T KOG4626|consen 161 VTQGDLELAVQCFFEALQLNPDL-----------------YC-------------------------------------- 185 (966)
T ss_pred HhcCCCcccHHHHHHHHhcCcch-----------------hh--------------------------------------
Confidence 99999999999999999975431 00
Q ss_pred hhcCCCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHhcCCChHH
Q 035707 295 LGKIEWDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICAENKVCIEE 374 (713)
Q Consensus 295 l~~~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~~ 374 (713)
+..++|..+...|+.++|..+|-+++. .+|....+|..+|-++-.+|+.. .
T Consensus 186 ---------a~s~lgnLlka~Grl~ea~~cYlkAi~-------------------~qp~fAiawsnLg~~f~~~Gei~-~ 236 (966)
T KOG4626|consen 186 ---------ARSDLGNLLKAEGRLEEAKACYLKAIE-------------------TQPCFAIAWSNLGCVFNAQGEIW-L 236 (966)
T ss_pred ---------hhcchhHHHHhhcccchhHHHHHHHHh-------------------hCCceeeeehhcchHHhhcchHH-H
Confidence 111233344455667777777776665 35778888999999999999999 9
Q ss_pred HHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 035707 375 GITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQ 454 (713)
Q Consensus 375 A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~ 454 (713)
|+..|+++++ ++|.-. .+|+.||.+| ...+.++.|+.+|.+|+ .+.|++..++-++|.+|..+
T Consensus 237 aiq~y~eAvk-ldP~f~----dAYiNLGnV~-----------ke~~~~d~Avs~Y~rAl-~lrpn~A~a~gNla~iYyeq 299 (966)
T KOG4626|consen 237 AIQHYEEAVK-LDPNFL----DAYINLGNVY-----------KEARIFDRAVSCYLRAL-NLRPNHAVAHGNLACIYYEQ 299 (966)
T ss_pred HHHHHHHhhc-CCCcch----HHHhhHHHHH-----------HHHhcchHHHHHHHHHH-hcCCcchhhccceEEEEecc
Confidence 9999999999 899988 9999999999 78888999999999999 99999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHH
Q 035707 455 RKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIET 534 (713)
Q Consensus 455 g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~ 534 (713)
|..+-|+..|++++++.|..+ +++.++|..+...|+..+|..+|.+++...| ..+++..++|.++..+|.+++|...
T Consensus 300 G~ldlAI~~Ykral~~~P~F~-~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p--~hadam~NLgni~~E~~~~e~A~~l 376 (966)
T KOG4626|consen 300 GLLDLAIDTYKRALELQPNFP-DAYNNLANALKDKGSVTEAVDCYNKALRLCP--NHADAMNNLGNIYREQGKIEEATRL 376 (966)
T ss_pred ccHHHHHHHHHHHHhcCCCch-HHHhHHHHHHHhccchHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHhccchHHHHH
Confidence 999999999999999999999 9999999999999999999999999999998 7899999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 035707 535 YVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEA 614 (713)
Q Consensus 535 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 614 (713)
|.++++..|.. +.++.+||.+|.++|++++|+.+|++++.+.|..++++.++|..|..
T Consensus 377 y~~al~v~p~~----------------------aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 377 YLKALEVFPEF----------------------AAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHhhChhh----------------------hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHH
Confidence 99999997654 89999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q 035707 615 KGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAG 687 (713)
Q Consensus 615 ~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 687 (713)
+|+.+.|+.+|.+++.++|..++++.+||.+|...|+.. +|+..|+.++++.|+.++++.++..++.-.-+
T Consensus 435 ~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~--~AI~sY~~aLklkPDfpdA~cNllh~lq~vcd 505 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIP--EAIQSYRTALKLKPDFPDAYCNLLHCLQIVCD 505 (966)
T ss_pred hhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcH--HHHHHHHHHHccCCCCchhhhHHHHHHHHHhc
Confidence 999999999999999999999999999999999999997 99999999999999999999999988776555
No 4
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.5e-39 Score=382.08 Aligned_cols=612 Identities=19% Similarity=0.107 Sum_probs=407.9
Q ss_pred cccCCCCChHHHhhhhhhhcc--CCHHHHHHHhhhHhhhcCCHHHHHhhhhcCCcccc-chhhhhhh----hhhcccccc
Q 035707 60 DAKVDNSNIEEAESSLRESGY--LNYEEARALLGRLEFQKGNIEAALHVFEGIDVAAV-TSRMKVSL----SRRCDQNRR 132 (713)
Q Consensus 60 ~~~~~~~~~~~A~~~l~~~l~--~~~~~a~~llg~~~~~~g~~~~Al~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~ 132 (713)
..++.+|++++|...|++++. ++..++++.+|.+++.+|++++|+..|+++..... .......+ ...+...+.
T Consensus 30 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~a 109 (899)
T TIGR02917 30 KSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQV 109 (899)
T ss_pred HHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCCCHHHH
Confidence 889999999999999999985 55999999999999999999999999997522111 11111111 001110000
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHhhhhhhccCchHHHHHHHHHHHHHHHHhcCCCCCCCCC----------cccchHHH
Q 035707 133 RSQSDAAPPMSMHAVSLLVEAIFLKTKSLQGLGRFEEACQSCKVILDTVEHALPEGLPGNHS----------IDCKLQET 202 (713)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~----------~~~~~~~~ 202 (713)
-........ .......++++..|.++..+|++++|...|+.++...+ .. ++... ..-.....
T Consensus 110 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~----~~-~~~~~~la~~~~~~~~~~~A~~~ 181 (899)
T TIGR02917 110 LDELPGKTL---LDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDP----RS-LYAKLGLAQLALAENRFDEARAL 181 (899)
T ss_pred HHhhccccc---CCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----CC-hhhHHHHHHHHHHCCCHHHHHHH
Confidence 000000000 00112346678889999999999999998887765321 00 00000 00000011
Q ss_pred ----------HHHHHHHhHHHHHhcCChhHHHHHHHHHhcccCCCChhHHHHH-------HHHHHHHHhhcCCCCCCC--
Q 035707 203 ----------LNKAVELLPELYKLAGDPDETILSYRRALLYYWNLDIETTARI-------EKKFAVFLLYSGTDASPP-- 263 (713)
Q Consensus 203 ----------~~~a~~~l~~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~i-------~~~~a~~ll~~~~~~~~~-- 263 (713)
...++..++.++...|++++|+..|++++...|.......... ..+-|...+.......|.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 261 (899)
T TIGR02917 182 IDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSP 261 (899)
T ss_pred HHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 1134556677777888888888888888776543211111100 001111111111111111
Q ss_pred cccccccccccCCchhHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHH
Q 035707 264 NLRLQMELSFVPRNNIEEAVLLLLILLKKIVLGKIEWDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLA 343 (713)
Q Consensus 264 ~~~~~~~~~~~~~~~~eeA~~ll~~~~~~~~l~~~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la 343 (713)
.........+...+++++|+..+ ...+...|........++.++...|+++.|...|++++...+.....+..++
T Consensus 262 ~~~~~~~~~~~~~~~~~~A~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la 336 (899)
T TIGR02917 262 LAHYLKALVDFQKKNYEDARETL-----QDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLA 336 (899)
T ss_pred hHHHHHHHHHHHhcCHHHHHHHH-----HHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 11111122334556677777665 3334455666666677777788888888888888887776666666666666
Q ss_pred HHhhcc---------------cCCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhc
Q 035707 344 LCYLGE---------------ENSDCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQ 408 (713)
Q Consensus 344 ~~~~~~---------------~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~ 408 (713)
.++... .+|.++..+..+|.++...|++. +|+.+|++++. ..|.+. .++..+|.++
T Consensus 337 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~-~~~~~~----~~~~~l~~~~--- 407 (899)
T TIGR02917 337 SIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFE-KAAEYLAKATE-LDPENA----AARTQLGISK--- 407 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHh-cCCCCH----HHHHHHHHHH---
Confidence 665543 56777777888888888888888 88888888887 677766 7777788888
Q ss_pred ccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHH
Q 035707 409 SRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSA 488 (713)
Q Consensus 409 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~ 488 (713)
...|++++|+..|++++ ...|........++..+...|++++|+..+++.+...|.++ ..+..+|.++..
T Consensus 408 --------~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~ 477 (899)
T TIGR02917 408 --------LSQGDPSEAIADLETAA-QLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNA-SLHNLLGAIYLG 477 (899)
T ss_pred --------HhCCChHHHHHHHHHHH-hhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCc-HHHHHHHHHHHh
Confidence 56666677777777777 66666666666667777777777777777777776666666 677777777777
Q ss_pred cCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh-----------
Q 035707 489 QKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVK----------- 557 (713)
Q Consensus 489 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~----------- 557 (713)
.|++++|+..|+++++..| .+..++..++.++...|++++|++.|++++...|.+...+.....+..
T Consensus 478 ~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 555 (899)
T TIGR02917 478 KGDLAKAREAFEKALSIEP--DFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAW 555 (899)
T ss_pred CCCHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777777777766 566667777777777777777777777777766655443332221111
Q ss_pred -hcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 035707 558 -NRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHV 636 (713)
Q Consensus 558 -~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 636 (713)
.......|.+...+..++.++...|++++|+..+++++...|.++.+|..+|.++...|++++|+..|++++..+|+++
T Consensus 556 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 635 (899)
T TIGR02917 556 LEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSA 635 (899)
T ss_pred HHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 0112223455677888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCCCC
Q 035707 637 PSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALLEESAPV 709 (713)
Q Consensus 637 ~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~~~ 709 (713)
.++..++.++...|+++ +|+..|+++++.+|++..++..++.++...|+ +++|...++.+.+..|+++.
T Consensus 636 ~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~ 704 (899)
T TIGR02917 636 LALLLLADAYAVMKNYA--KAITSLKRALELKPDNTEAQIGLAQLLLAAKR--TESAKKIAKSLQKQHPKAAL 704 (899)
T ss_pred HHHHHHHHHHHHcCCHH--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCcCChH
Confidence 88888888888888886 88888888888888888888888888888888 88888888888887777653
No 5
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.5e-38 Score=376.65 Aligned_cols=569 Identities=18% Similarity=0.112 Sum_probs=348.2
Q ss_pred ccccCCCCChHHHhhhhhhhccCC--HHHHHHHhhhHhhhcCCHHHHHhhhhcCCcc-ccchhhhhhhhhhccccccCCC
Q 035707 59 MDAKVDNSNIEEAESSLRESGYLN--YEEARALLGRLEFQKGNIEAALHVFEGIDVA-AVTSRMKVSLSRRCDQNRRRSQ 135 (713)
Q Consensus 59 ~~~~~~~~~~~~A~~~l~~~l~~~--~~~a~~llg~~~~~~g~~~~Al~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 135 (713)
+..++..|++++|...|++++..+ +..+++.+|.+++.+|++++|+..|+++... +-.+.....+ .......++.
T Consensus 268 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l-a~~~~~~g~~- 345 (899)
T TIGR02917 268 ALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLL-ASIQLRLGRV- 345 (899)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH-HHHHHHCCCH-
Confidence 356788899999999999998544 7788999999999999999999999865211 0001000000 0000000000
Q ss_pred CCCCCCcchhHHHH----------HHHHHHHhhhhhhccCchHHHHHHHHHHHHHHHHhcCCCCCCCCCcccchHHHHHH
Q 035707 136 SDAAPPMSMHAVSL----------LVEAIFLKTKSLQGLGRFEEACQSCKVILDTVEHALPEGLPGNHSIDCKLQETLNK 205 (713)
Q Consensus 136 ~~~~~~~~~~~~~~----------~~e~~~~~~~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (713)
..+... ....++..|.++.+.|++++|.+.|+.++.. .|.. ..
T Consensus 346 --------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~-----------~~ 398 (899)
T TIGR02917 346 --------DEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATEL--------DPEN-----------AA 398 (899)
T ss_pred --------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCC-----------HH
Confidence 000000 0134566677778888888888887776652 1110 12
Q ss_pred HHHHhHHHHHhcCChhHHHHHHHHHhcccCCCChhHHHHH-------HHHHHHHHhhcCCCCCC--CcccccccccccCC
Q 035707 206 AVELLPELYKLAGDPDETILSYRRALLYYWNLDIETTARI-------EKKFAVFLLYSGTDASP--PNLRLQMELSFVPR 276 (713)
Q Consensus 206 a~~~l~~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~i-------~~~~a~~ll~~~~~~~~--~~~~~~~~~~~~~~ 276 (713)
++..++.++...|++++|+..|++++...++........+ ...-|...+.......| +.....+...+...
T Consensus 399 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 478 (899)
T TIGR02917 399 ARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGK 478 (899)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhC
Confidence 4456777778888888888888888776543222111100 00001111111111111 11122333345555
Q ss_pred chhHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcc-------
Q 035707 277 NNIEEAVLLLLILLKKIVLGKIEWDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGE------- 349 (713)
Q Consensus 277 ~~~eeA~~ll~~~~~~~~l~~~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~------- 349 (713)
+++++|+..+. ..+...|.++.++..++..+...|+++.|.+.|++++...+.....+..++.++...
T Consensus 479 ~~~~~A~~~~~-----~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 553 (899)
T TIGR02917 479 GDLAKAREAFE-----KALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAV 553 (899)
T ss_pred CCHHHHHHHHH-----HHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHH
Confidence 66666655542 223344555566666666666666666666666666555555555555555554333
Q ss_pred --------cCCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhc
Q 035707 350 --------ENSDCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILK 421 (713)
Q Consensus 350 --------~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~ 421 (713)
.+|.+...++.++..+...|++. +|+..++++++ ..|.+. .++..+|.++ ...|+
T Consensus 554 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~-~~~~~~----~~~~~l~~~~-----------~~~~~ 616 (899)
T TIGR02917 554 AWLEKAAELNPQEIEPALALAQYYLGKGQLK-KALAILNEAAD-AAPDSP----EAWLMLGRAQ-----------LAAGD 616 (899)
T ss_pred HHHHHHHHhCccchhHHHHHHHHHHHCCCHH-HHHHHHHHHHH-cCCCCH----HHHHHHHHHH-----------HHcCC
Confidence 45555555556666666666666 66666666655 455554 5566666666 55566
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 035707 422 QSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVIND 501 (713)
Q Consensus 422 ~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 501 (713)
+++|+..|++++ ...|.++.++..+|.++...|++++|+..|+++++.+|++. .++..++.++...|++++|+..++.
T Consensus 617 ~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~ 694 (899)
T TIGR02917 617 LNKAVSSFKKLL-ALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNT-EAQIGLAQLLLAAKRTESAKKIAKS 694 (899)
T ss_pred HHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666666666 66666666666666666666666666666666666666665 6666666666666666666666666
Q ss_pred HhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHC
Q 035707 502 SLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSL 581 (713)
Q Consensus 502 al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 581 (713)
+.+..| .+...+..+|.++...|++++|++.|++++...|++ ..+..++.++...
T Consensus 695 ~~~~~~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------------------~~~~~l~~~~~~~ 749 (899)
T TIGR02917 695 LQKQHP--KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-----------------------QNAIKLHRALLAS 749 (899)
T ss_pred HHhhCc--CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-----------------------hHHHHHHHHHHHC
Confidence 666555 455556666666666666666666666666654432 4556677777777
Q ss_pred CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHH
Q 035707 582 SQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFL 661 (713)
Q Consensus 582 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~ 661 (713)
|++++|+..+++++...|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..++.++...|+ + +|+.++
T Consensus 750 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~--~A~~~~ 826 (899)
T TIGR02917 750 GNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-P--RALEYA 826 (899)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-H--HHHHHH
Confidence 7777777777777777777777777777777777777777777777777777777777777777777777 4 677777
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCCCCC
Q 035707 662 TDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALLEESAPVE 710 (713)
Q Consensus 662 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~~~~ 710 (713)
++++...|+++..+..+|.++...|+ +++|..+|+++++..|+++..
T Consensus 827 ~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~ 873 (899)
T TIGR02917 827 EKALKLAPNIPAILDTLGWLLVEKGE--ADRALPLLRKAVNIAPEAAAI 873 (899)
T ss_pred HHHHhhCCCCcHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCChHH
Confidence 77777777777777777777777777 777777777777777766543
No 6
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.3e-35 Score=350.41 Aligned_cols=551 Identities=15% Similarity=0.083 Sum_probs=357.1
Q ss_pred cccCCCCChHHHhhhhhhhcc--CCHHHHHHHhhhHhhhcCCHHHHHhhhhcCCcc-ccchhhhhhhhhhccccccCCCC
Q 035707 60 DAKVDNSNIEEAESSLRESGY--LNYEEARALLGRLEFQKGNIEAALHVFEGIDVA-AVTSRMKVSLSRRCDQNRRRSQS 136 (713)
Q Consensus 60 ~~~~~~~~~~~A~~~l~~~l~--~~~~~a~~llg~~~~~~g~~~~Al~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 136 (713)
.-....++.+.|+.+|++++. ++++++...+++++..+|++++|...+++.... +-.+....
T Consensus 36 ~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~--------------- 100 (1157)
T PRK11447 36 RLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRS--------------- 100 (1157)
T ss_pred HHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHH---------------
Confidence 556678999999999999984 559999999999999999999999999975211 11111000
Q ss_pred CCCCCcchhHHHHH-------HHHHHHhhhhhhccCchHHHHHHHHHHHHHHHHhcCCCCCCCCCcccchHHHHHHHHHH
Q 035707 137 DAAPPMSMHAVSLL-------VEAIFLKTKSLQGLGRFEEACQSCKVILDTVEHALPEGLPGNHSIDCKLQETLNKAVEL 209 (713)
Q Consensus 137 ~~~~~~~~~~~~~~-------~e~~~~~~~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 209 (713)
.... ....+.+|..+...|++++|++.|++++.. .|+.. ..++++
T Consensus 101 ----------~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~--------~p~~~----------~la~~y 152 (1157)
T PRK11447 101 ----------SRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNG--------APPEL----------DLAVEY 152 (1157)
T ss_pred ----------HHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccC--------CCCCh----------HHHHHH
Confidence 0000 012466788899999999999999887652 22211 112333
Q ss_pred hHHHHHhcCChhHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHhhcCCCC-----------CCCccc------------
Q 035707 210 LPELYKLAGDPDETILSYRRALLYYWNLDIETTARIEKKFAVFLLYSGTDA-----------SPPNLR------------ 266 (713)
Q Consensus 210 l~~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~i~~~~a~~ll~~~~~~-----------~~~~~~------------ 266 (713)
...+....|++++|+..|++++...|+-... ...++.+++..+... .++...
T Consensus 153 ~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~-----~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~ 227 (1157)
T PRK11447 153 WRLVAKLPAQRPEAINQLQRLNADYPGNTGL-----RNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKD 227 (1157)
T ss_pred HHHHhhCCccHHHHHHHHHHHHHhCCCCHHH-----HHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 3444445678888888888887775442111 111222211111000 000000
Q ss_pred -----------ccccccccCCchhHHHHHHHHHHHHHHHhhcCCCcHH-HHHHHHHHHHhcCcHHHHHHHHHhhCCCCCC
Q 035707 267 -----------LQMELSFVPRNNIEEAVLLLLILLKKIVLGKIEWDPS-IIDHLSFALSVSGELWTLAHQVEELLPGVMG 334 (713)
Q Consensus 267 -----------~~~~~~~~~~~~~eeA~~ll~~~~~~~~l~~~~~~~~-~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~ 334 (713)
......+-.......|...+.. . ...+.++. ....++.++...|+++.|...|++++.
T Consensus 228 ~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~-----~-~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~---- 297 (1157)
T PRK11447 228 MPVSDASVAALQKYLQVFSDGDSVAAARSQLAE-----Q-QKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVR---- 297 (1157)
T ss_pred cCCChhhHHHHHHHHHHCCCchHHHHHHHHHHH-----H-HHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHH----
Confidence 0000000000011112111100 0 01111222 223457888999999999999999887
Q ss_pred chhhHHHHHHHhhcccCCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchH----------HHHHHHHHHH
Q 035707 335 NKKRYCTLALCYLGEENSDCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMA----------SIANCLLGVL 404 (713)
Q Consensus 335 ~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~----------~~a~~~lg~~ 404 (713)
.+|+++.++..+|.++...|+++ +|+.+|+++++ ..|.+.... ......+|.+
T Consensus 298 ---------------~~P~~~~a~~~Lg~~~~~~g~~~-eA~~~l~~Al~-~~p~~~~~~~~~~ll~~~~~~~~~~~g~~ 360 (1157)
T PRK11447 298 ---------------ANPKDSEALGALGQAYSQQGDRA-RAVAQFEKALA-LDPHSSNRDKWESLLKVNRYWLLIQQGDA 360 (1157)
T ss_pred ---------------hCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHH-hCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence 36899999999999999999999 99999999999 677654211 1122344666
Q ss_pred HhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHH-
Q 035707 405 LSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLA- 483 (713)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la- 483 (713)
+ ...|++++|+..|++++ ..+|+++.+++.+|.++...|++++|++.|+++++.+|++. .++..++
T Consensus 361 ~-----------~~~g~~~eA~~~~~~Al-~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~-~a~~~L~~ 427 (1157)
T PRK11447 361 A-----------LKANNLAQAERLYQQAR-QVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT-NAVRGLAN 427 (1157)
T ss_pred H-----------HHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHH
Confidence 6 67899999999999999 99999999999999999999999999999999999999987 6555444
Q ss_pred -----------------------------------------HHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHH
Q 035707 484 -----------------------------------------RVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQ 522 (713)
Q Consensus 484 -----------------------------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~ 522 (713)
.++...|++++|+..|+++++.+| ++..+++.+|.++
T Consensus 428 l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P--~~~~~~~~LA~~~ 505 (1157)
T PRK11447 428 LYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP--GSVWLTYRLAQDL 505 (1157)
T ss_pred HHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHH
Confidence 445567999999999999999999 7899999999999
Q ss_pred HHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh-------------hc------------------------------
Q 035707 523 IAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVK-------------NR------------------------------ 559 (713)
Q Consensus 523 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~-------------~~------------------------------ 559 (713)
...|++++|+..+++++...|.+...+.....+.. ..
T Consensus 506 ~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999999999999999887765432211110 00
Q ss_pred ---------ccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 035707 560 ---------QNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALD 630 (713)
Q Consensus 560 ---------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 630 (713)
.....|.++..+..+|.++...|++++|+.+|+++++.+|+++.++..++.++...|++++|+..|++++.
T Consensus 586 ~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 586 SGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred CCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 00112333445555555555555555565555555555555555555555555555555566555555555
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHccc
Q 035707 631 AEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNT------TAWYNLGLLYKTYAGASALEAVECFEAAALLE 704 (713)
Q Consensus 631 ~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~ 704 (713)
..|+++.++..+|.++...|+++ +|+..|++++...|+++ .++..+|.++...|+ +++|+..|++|+...
T Consensus 666 ~~p~~~~~~~~la~~~~~~g~~~--eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~--~~~A~~~y~~Al~~~ 741 (1157)
T PRK11447 666 TANDSLNTQRRVALAWAALGDTA--AAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQ--PQQALETYKDAMVAS 741 (1157)
T ss_pred cCCCChHHHHHHHHHHHhCCCHH--HHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhc
Confidence 55555555555555555555554 55555555555544322 234445555555555 666666555555433
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=7.8e-35 Score=345.92 Aligned_cols=550 Identities=16% Similarity=0.065 Sum_probs=372.0
Q ss_pred ccccCCCCChHHHhhhhhhhccC--CHHHH----------------HHHhhhHhhhcCCHHHHHhhhhcCCccccchhhh
Q 035707 59 MDAKVDNSNIEEAESSLRESGYL--NYEEA----------------RALLGRLEFQKGNIEAALHVFEGIDVAAVTSRMK 120 (713)
Q Consensus 59 ~~~~~~~~~~~~A~~~l~~~l~~--~~~~a----------------~~llg~~~~~~g~~~~Al~~~~~~~~~~~~~~~~ 120 (713)
+...+..|++++|...+++.+.+ ++.++ .+.+|+++...|++++|+..|+++-...
T Consensus 69 ~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~------ 142 (1157)
T PRK11447 69 FRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA------ 142 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC------
Confidence 46778999999999999999854 45554 3667889999999999999999752110
Q ss_pred hhhhhhccccccCCCCCCCCCcchhHHHHHHHHHHHhhhhhhccCchHHHHHHHHHHHHHHHHhcCCCCCCCCCcccchH
Q 035707 121 VSLSRRCDQNRRRSQSDAAPPMSMHAVSLLVEAIFLKTKSLQGLGRFEEACQSCKVILDTVEHALPEGLPGNHSIDCKLQ 200 (713)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 200 (713)
| +. . .+..+.+ .......|++++|+..|++++... |..
T Consensus 143 p-------------------~~-~---~la~~y~---~~~~~~~g~~~~A~~~L~~ll~~~--------P~~-------- 180 (1157)
T PRK11447 143 P-------------------PE-L---DLAVEYW---RLVAKLPAQRPEAINQLQRLNADY--------PGN-------- 180 (1157)
T ss_pred C-------------------CC-h---HHHHHHH---HHHhhCCccHHHHHHHHHHHHHhC--------CCC--------
Confidence 0 00 0 0111111 122235689999999999887732 221
Q ss_pred HHHHHHHHHhHHHHHhcCChhHHHHHHHHHhcccCCCCh----------------hHHHHHH-----------HHHHHHH
Q 035707 201 ETLNKAVELLPELYKLAGDPDETILSYRRALLYYWNLDI----------------ETTARIE-----------KKFAVFL 253 (713)
Q Consensus 201 ~~~~~a~~~l~~~~~~~g~~~eA~~~~~~al~~~~~~~~----------------~~~~~i~-----------~~~a~~l 253 (713)
..+...++.++...|++++|+..|++++..+..... .....+. ...+...
T Consensus 181 ---~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~ 257 (1157)
T PRK11447 181 ---TGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQ 257 (1157)
T ss_pred ---HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHH
Confidence 124567889999999999999999998765321000 0000000 0000000
Q ss_pred hhcCC--CCCCCcccccccccccCCchhHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCC
Q 035707 254 LYSGT--DASPPNLRLQMELSFVPRNNIEEAVLLLLILLKKIVLGKIEWDPSIIDHLSFALSVSGELWTLAHQVEELLPG 331 (713)
Q Consensus 254 l~~~~--~~~~~~~~~~~~~~~~~~~~~eeA~~ll~~~~~~~~l~~~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~ 331 (713)
+.... ...|..........+...+++++|+..+ +..+...|.++.++..|+.+|.+.|++++|...|++++..
T Consensus 258 L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l-----~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~ 332 (1157)
T PRK11447 258 LAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPEL-----QQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALAL 332 (1157)
T ss_pred HHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHH-----HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 10000 0011111111233456778999998877 5566778999999999999999999999999999999876
Q ss_pred CCCch--hhHHHH------------HHHhhcc---------------cCCCChHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 035707 332 VMGNK--KRYCTL------------ALCYLGE---------------ENSDCNLELLVASKICAENKVCIEEGITYARKA 382 (713)
Q Consensus 332 ~~~~~--~~~~~l------------a~~~~~~---------------~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~a 382 (713)
.+... ..|..+ +.++... .+|++..+++.+|.++...|++. +|+++|+++
T Consensus 333 ~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~-eA~~~y~~a 411 (1157)
T PRK11447 333 DPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYA-AAERYYQQA 411 (1157)
T ss_pred CCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH-HHHHHHHHH
Confidence 65443 223211 2222211 67778888888888888888888 888888888
Q ss_pred HHhhhccCcchHHHHHHHHHHHHhhcccccccH--------------------------------HHHHhcHHHHHHHHH
Q 035707 383 LSMLQGKCRQMASIANCLLGVLLSSQSRSVVSD--------------------------------SKRILKQSQALVALE 430 (713)
Q Consensus 383 l~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~--------------------------------~~~~~~~~~A~~~~~ 430 (713)
++ ..|.+. .++..++.+|..+ ....+. +...|++++|+..|+
T Consensus 412 L~-~~p~~~----~a~~~L~~l~~~~-~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~ 485 (1157)
T PRK11447 412 LR-MDPGNT----NAVRGLANLYRQQ-SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQR 485 (1157)
T ss_pred HH-hCCCCH----HHHHHHHHHHHhc-CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 87 677776 7777777776432 233221 112466777777777
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCC
Q 035707 431 TAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWD 510 (713)
Q Consensus 431 ~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 510 (713)
+++ +.+|+++.+++.+|.+|...|++++|+..++++++..|+++ ..++.++..+...+++++|+.+++++........
T Consensus 486 ~Al-~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~-~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~ 563 (1157)
T PRK11447 486 QRL-ALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDP-EQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSN 563 (1157)
T ss_pred HHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChh
Confidence 777 77777777777777777777777777777777777777766 6666677666677777777777766543221000
Q ss_pred --------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh------------hcccCCCccHHHH
Q 035707 511 --------QGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVK------------NRQNHDRSLEMET 570 (713)
Q Consensus 511 --------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~ 570 (713)
.......++..+...|++++|+..++ ..|.+...+.....+.. .......|.++.+
T Consensus 564 ~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a 639 (1157)
T PRK11447 564 IQELAQRLQSDQVLETANRLRDSGKEAEAEALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADA 639 (1157)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 01123355666777777777777665 34554443332222111 1344456788999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHH
Q 035707 571 WHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHV------PSLVSIAR 644 (713)
Q Consensus 571 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~------~~~~~la~ 644 (713)
+..++.+|...|++++|+.+++++++..|+++.++..+|.++...|++++|+..|++++...|+++ ..+..+|.
T Consensus 640 ~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~ 719 (1157)
T PRK11447 640 RLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAAR 719 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999876544 35666799
Q ss_pred HHHHhcCCChHHHHHHHHHHHh---hCCCCHHHHHHHH
Q 035707 645 VLRQIGGESMATIRCFLTDALR---LDRTNTTAWYNLG 679 (713)
Q Consensus 645 ~~~~~g~~~l~~A~~~~~~al~---~~p~~~~~~~~lg 679 (713)
++...|+++ +|+..|++++. +.|..+...-.++
T Consensus 720 ~~~~~G~~~--~A~~~y~~Al~~~~~~~~~p~~~~~~~ 755 (1157)
T PRK11447 720 FEAQTGQPQ--QALETYKDAMVASGITPTRPQDNDTFT 755 (1157)
T ss_pred HHHHcCCHH--HHHHHHHHHHhhcCCCCCCCCCchHHH
Confidence 999999997 99999999986 5577777533333
No 8
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=6e-32 Score=306.37 Aligned_cols=578 Identities=14% Similarity=-0.022 Sum_probs=381.6
Q ss_pred cccccCCCCChHHHhhhhhhhcc--CCHHHHHHHhhhHhhhcCCHHHHHhhhhcCC-ccccchhhhhhhhhhccccccCC
Q 035707 58 EMDAKVDNSNIEEAESSLRESGY--LNYEEARALLGRLEFQKGNIEAALHVFEGID-VAAVTSRMKVSLSRRCDQNRRRS 134 (713)
Q Consensus 58 ~~~~~~~~~~~~~A~~~l~~~l~--~~~~~a~~llg~~~~~~g~~~~Al~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 134 (713)
++.-+..+||+++|+..|+.++. +++.++++.|++++...|++++|+..++++. .++-.......+ ... ++
T Consensus 50 ~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L-a~i----~~- 123 (987)
T PRK09782 50 KALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL-AAI----PV- 123 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH-HHh----cc-
Confidence 44667778999999999999995 5599999999999999999999999999752 111111111111 111 00
Q ss_pred CCCCCCCcchhHHHHHH-------HHHHHhhhhh-----hccCchHHHHHHHHHHHHHHHHhcCCCCCCCCCcccchHHH
Q 035707 135 QSDAAPPMSMHAVSLLV-------EAIFLKTKSL-----QGLGRFEEACQSCKVILDTVEHALPEGLPGNHSIDCKLQET 202 (713)
Q Consensus 135 ~~~~~~~~~~~~~~~~~-------e~~~~~~~~~-----~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 202 (713)
.+. ......-++ ++++.++..+ ....++++|.+.++ +. ...+.+.|
T Consensus 124 -~~k----A~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr---~~~~~~~~------------ 181 (987)
T PRK09782 124 -EVK----SVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DA---TFAASPEG------------ 181 (987)
T ss_pred -Chh----HHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--Hh---hhCCCCCc------------
Confidence 000 011111111 3444444441 11223344443332 11 11111111
Q ss_pred HHHHHHHh-HHHHHhcCChhHHHHHHHHHhcccCCCChhHHHHHHH--------HHHHHHhhcCCCCCCCcccccccccc
Q 035707 203 LNKAVELL-PELYKLAGDPDETILSYRRALLYYWNLDIETTARIEK--------KFAVFLLYSGTDASPPNLRLQMELSF 273 (713)
Q Consensus 203 ~~~a~~~l-~~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~i~~--------~~a~~ll~~~~~~~~~~~~~~~~~~~ 273 (713)
..+.+. ..+|.+.|++++|+..++++++.++...... ..+.. +-+..+ +.......+.+...+...+
T Consensus 182 --~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~-~~L~~ay~q~l~~~~a~al-~~~~lk~d~~l~~ala~~y 257 (987)
T PRK09782 182 --KTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAER-RQWFDVLLAGQLDDRLLAL-QSQGIFTDPQSRITYATAL 257 (987)
T ss_pred --HHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHhhCHHHHHHH-hchhcccCHHHHHHHHHHH
Confidence 123333 7899999999999999999999865532211 11100 001110 1100001111122333344
Q ss_pred cCCchhHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHh-----------------------------cCcHHHHHHH
Q 035707 274 VPRNNIEEAVLLLLILLKKIVLGKIEWDPSIIDHLSFALSV-----------------------------SGELWTLAHQ 324 (713)
Q Consensus 274 ~~~~~~eeA~~ll~~~~~~~~l~~~~~~~~~~~~l~~a~~~-----------------------------~g~~~~a~~~ 324 (713)
+..|+.++|..++..+ .......|..+.....++.+... .+++. +.+.
T Consensus 258 i~~G~~~~A~~~L~~~--~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 334 (987)
T PRK09782 258 AYRGEKARLQHYLIEN--KPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYD-AAQK 334 (987)
T ss_pred HHCCCHHHHHHHHHhC--cccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHH-HHHH
Confidence 4555555554443211 11111223333333333322111 01111 0000
Q ss_pred HHhhCCCCCCchhhHHHHHHHhhcc----------------cCCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhc
Q 035707 325 VEELLPGVMGNKKRYCTLALCYLGE----------------ENSDCNLELLVASKICAENKVCIEEGITYARKALSMLQG 388 (713)
Q Consensus 325 ~e~~l~~~~~~~~~~~~la~~~~~~----------------~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~ 388 (713)
++...+.... ..+...+... ..|.+...+..++....+.|+.. +|..+++++.. . +
T Consensus 335 ---~~~~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~-~a~~~~~~~~~-~-~ 406 (987)
T PRK09782 335 ---LLATLPANEM--LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSR-EAADLLLQRYP-F-Q 406 (987)
T ss_pred ---HhcCCCcchH--HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHH-HHHHHHHHhcC-C-C
Confidence 1111111110 0000000000 44889999999999999999999 99999999988 3 3
Q ss_pred cCcchHHHHHHHHHHHHhhcccccccH--------------HHHHhcHHH---HHHHHHHHHHhhCCC--CHHHHHHHHH
Q 035707 389 KCRQMASIANCLLGVLLSSQSRSVVSD--------------SKRILKQSQ---ALVALETAEKTMRER--DPYIIYHLCL 449 (713)
Q Consensus 389 ~~~~~~~~a~~~lg~~~~~~~~~~~~~--------------~~~~~~~~~---A~~~~~~al~~~~p~--~~~~~~~la~ 449 (713)
.+..........++..|..+....... ....|+..+ +...+.+++ ...|. ++.+++.+|.
T Consensus 407 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al-~~~p~~~~~~a~~~LG~ 485 (987)
T PRK09782 407 GDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLL-GDMSPSYDAAAWNRLAK 485 (987)
T ss_pred cccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhc-ccCCCCCCHHHHHHHHH
Confidence 333222233447888887665522221 122454433 555666666 66677 9999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHH
Q 035707 450 ENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLK 529 (713)
Q Consensus 450 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~ 529 (713)
++.. +++.+|+..+.+++...|++ .....+|.++...|++++|+..|++++...| . ...+..+|.++...|+++
T Consensus 486 ~l~~-~~~~eAi~a~~~Al~~~Pd~--~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p--~-~~a~~~la~all~~Gd~~ 559 (987)
T PRK09782 486 CYRD-TLPGVALYAWLQAEQRQPDA--WQHRAVAYQAYQVEDYATALAAWQKISLHDM--S-NEDLLAAANTAQAAGNGA 559 (987)
T ss_pred HHHh-CCcHHHHHHHHHHHHhCCch--HHHHHHHHHHHHCCCHHHHHHHHHHHhccCC--C-cHHHHHHHHHHHHCCCHH
Confidence 9987 89999999999999999975 3466778888899999999999999887755 2 345778899999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 035707 530 NAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTG 609 (713)
Q Consensus 530 ~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 609 (713)
+|+..|+++++..|.. ...+..++......|++++|+..|+++++.+|+ +.++..+|
T Consensus 560 eA~~~l~qAL~l~P~~----------------------~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA 616 (987)
T PRK09782 560 ARDRWLQQAEQRGLGD----------------------NALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARA 616 (987)
T ss_pred HHHHHHHHHHhcCCcc----------------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHH
Confidence 9999999999986543 555666676777789999999999999999996 89999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCC
Q 035707 610 LLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGAS 689 (713)
Q Consensus 610 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 689 (713)
.++.+.|++++|+..|++++.++|+++.++.++|.++...|+++ +|+..|+++++.+|+++.+++++|.++...|+
T Consensus 617 ~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~e--eAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd-- 692 (987)
T PRK09782 617 TIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIA--QSREMLERAHKGLPDDPALIRQLAYVNQRLDD-- 692 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--
Confidence 99999999999999999999999999999999999999999987 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccccCCCCCCC
Q 035707 690 ALEAVECFEAAALLEESAPVEPF 712 (713)
Q Consensus 690 ~~~A~~~~~~a~~l~p~~~~~~f 712 (713)
+++|+.+|+++++++|++..+.+
T Consensus 693 ~~eA~~~l~~Al~l~P~~a~i~~ 715 (987)
T PRK09782 693 MAATQHYARLVIDDIDNQALITP 715 (987)
T ss_pred HHHHHHHHHHHHhcCCCCchhhh
Confidence 99999999999999999876543
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=5.1e-32 Score=302.85 Aligned_cols=439 Identities=15% Similarity=0.064 Sum_probs=273.6
Q ss_pred HHHHHHHhhhhhhccCchHHHHHHHHHHHHHHHHhcCCCCCCCCCcccchHHHHHHHHHHhHHHHHhcCChhHHHHHHHH
Q 035707 150 LVEAIFLKTKSLQGLGRFEEACQSCKVILDTVEHALPEGLPGNHSIDCKLQETLNKAVELLPELYKLAGDPDETILSYRR 229 (713)
Q Consensus 150 ~~e~~~~~~~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~~~~ 229 (713)
.+..+..+|..+++.|+|++|+..|++++... |+ ...+..++.+|...|++++|+..|.+
T Consensus 126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~--------p~------------~~~~~n~a~~~~~l~~~~~Ai~~~~~ 185 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECK--------PD------------PVYYSNRAACHNALGDWEKVVEDTTA 185 (615)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------Cc------------hHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34567788999999999999999999888632 21 01456788899999999999999999
Q ss_pred HhcccCCCChhHHHHHHHHHHHHHhhcCCCCCCCcccccccccccCCchhHHHHHHHHHHHHHHHhhcCCCcHHHHHHHH
Q 035707 230 ALLYYWNLDIETTARIEKKFAVFLLYSGTDASPPNLRLQMELSFVPRNNIEEAVLLLLILLKKIVLGKIEWDPSIIDHLS 309 (713)
Q Consensus 230 al~~~~~~~~~~~~~i~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~eeA~~ll~~~~~~~~l~~~~~~~~~~~~l~ 309 (713)
++..+|+... . ....+ ..+...+++++|+..+... +...+.+......+.
T Consensus 186 al~l~p~~~~-a----~~~~a--------------------~a~~~lg~~~eA~~~~~~~-----~~~~~~~~~~~~~~~ 235 (615)
T TIGR00990 186 ALELDPDYSK-A----LNRRA--------------------NAYDGLGKYADALLDLTAS-----CIIDGFRNEQSAQAV 235 (615)
T ss_pred HHHcCCCCHH-H----HHHHH--------------------HHHHHcCCHHHHHHHHHHH-----HHhCCCccHHHHHHH
Confidence 9887433110 0 00011 1133445566665443211 111111111111111
Q ss_pred HHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcc
Q 035707 310 FALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICAENKVCIEEGITYARKALSMLQGK 389 (713)
Q Consensus 310 ~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~ 389 (713)
..+.. ..+.......+.. .|.+...+..++..+ ...... .+...+..... .++.
T Consensus 236 ~~~l~----~~a~~~~~~~l~~-------------------~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~-~~~~ 289 (615)
T TIGR00990 236 ERLLK----KFAESKAKEILET-------------------KPENLPSVTFVGNYL-QSFRPK-PRPAGLEDSNE-LDEE 289 (615)
T ss_pred HHHHH----HHHHHHHHHHHhc-------------------CCCCCCCHHHHHHHH-HHccCC-cchhhhhcccc-cccc
Confidence 11111 1122222222222 233333333333322 111222 22222222222 2333
Q ss_pred CcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 035707 390 CRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMR---ERDPYIIYHLCLENAEQRKLDVALYYAKK 466 (713)
Q Consensus 390 ~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 466 (713)
.. ..+..+|..+... ...+.+++|+..|++++ ... |....++..+|.++...|++++|+..|++
T Consensus 290 ~~----~~~~~l~~~~~e~--------~~~~~y~~A~~~~~~al-~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 290 TG----NGQLQLGLKSPES--------KADESYEEAARAFEKAL-DLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred cc----cchHHHHHHHHHh--------hhhhhHHHHHHHHHHHH-hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 22 3334444332100 12356777777777777 653 55666777777777777888888888888
Q ss_pred HHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhh
Q 035707 467 LLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRK 546 (713)
Q Consensus 467 ~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 546 (713)
++..+|.+. .+|..+|.++...|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..|++++.++|++
T Consensus 357 al~l~P~~~-~~~~~la~~~~~~g~~~eA~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~- 432 (615)
T TIGR00990 357 SIELDPRVT-QSYIKRASMNLELGDPDKAEEDFDKALKLNS--EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF- 432 (615)
T ss_pred HHHcCCCcH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC-
Confidence 777777776 7777777777777888888888887777777 667777777777777788888888888777776544
Q ss_pred hhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 035707 547 KSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFR 626 (713)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~ 626 (713)
...+..+|.++..+|++++|+..|++++...|.++.++..+|.++...|++++|+..|+
T Consensus 433 ---------------------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~ 491 (615)
T TIGR00990 433 ---------------------IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFD 491 (615)
T ss_pred ---------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 66677777777777888888888887777777777777777877777788888888888
Q ss_pred HHHhcCCCCHHHH------HHHHHHH-HHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 035707 627 KALDAEPNHVPSL------VSIARVL-RQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEA 699 (713)
Q Consensus 627 ~al~~~p~~~~~~------~~la~~~-~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~ 699 (713)
+++.+.|++...+ ...+.++ ...|+++ +|+.++++++.++|++..++..+|.++...|+ +++|+.+|++
T Consensus 492 ~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~--eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~--~~eAi~~~e~ 567 (615)
T TIGR00990 492 TAIELEKETKPMYMNVLPLINKALALFQWKQDFI--EAENLCEKALIIDPECDIAVATMAQLLLQQGD--VDEALKLFER 567 (615)
T ss_pred HHHhcCCccccccccHHHHHHHHHHHHHHhhhHH--HHHHHHHHHHhcCCCcHHHHHHHHHHHHHccC--HHHHHHHHHH
Confidence 8777777543222 2222223 3356665 77777777777777777777777888888888 8888888877
Q ss_pred HHccccC
Q 035707 700 AALLEES 706 (713)
Q Consensus 700 a~~l~p~ 706 (713)
++++.++
T Consensus 568 A~~l~~~ 574 (615)
T TIGR00990 568 AAELART 574 (615)
T ss_pred HHHHhcc
Confidence 7776654
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=6.6e-31 Score=293.89 Aligned_cols=437 Identities=17% Similarity=0.121 Sum_probs=331.0
Q ss_pred HHHHHHHhhhHhhhcCCHHHHHhhhhcCCccccchhhhhhhhhhccccccCCCCCCCCCcchhHHHHHHHHHHHhhhhhh
Q 035707 83 YEEARALLGRLEFQKGNIEAALHVFEGIDVAAVTSRMKVSLSRRCDQNRRRSQSDAAPPMSMHAVSLLVEAIFLKTKSLQ 162 (713)
Q Consensus 83 ~~~a~~llg~~~~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 162 (713)
+..++.-+|..++..|+|++|+..|+++. ...| . ...++.+|.||.
T Consensus 126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al------~~~p-----------------------~-----~~~~~n~a~~~~ 171 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAI------ECKP-----------------------D-----PVYYSNRAACHN 171 (615)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH------hcCC-----------------------c-----hHHHHHHHHHHH
Confidence 45667789999999999999999998751 1111 0 034778899999
Q ss_pred ccCchHHHHHHHHHHHHHHHHhcCCCCCCCCCcccchHHHHHHHHHHhHHHHHhcCChhHHHHHHHHHhcccCCCChhHH
Q 035707 163 GLGRFEEACQSCKVILDTVEHALPEGLPGNHSIDCKLQETLNKAVELLPELYKLAGDPDETILSYRRALLYYWNLDIETT 242 (713)
Q Consensus 163 ~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~ 242 (713)
++|++++|+..|..++... |+ ..+++..+|.+|...|++++|+..|..++..++..+....
T Consensus 172 ~l~~~~~Ai~~~~~al~l~--------p~-----------~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~ 232 (615)
T TIGR00990 172 ALGDWEKVVEDTTAALELD--------PD-----------YSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSA 232 (615)
T ss_pred HhCCHHHHHHHHHHHHHcC--------CC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHH
Confidence 9999999999999998731 22 2468889999999999999999999877665322111100
Q ss_pred HHHH---HHHHHHHhhcCCCCCCCcccccccccccCCchhHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCcHH
Q 035707 243 ARIE---KKFAVFLLYSGTDASPPNLRLQMELSFVPRNNIEEAVLLLLILLKKIVLGKIEWDPSIIDHLSFALSVSGELW 319 (713)
Q Consensus 243 ~~i~---~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~eeA~~ll~~~~~~~~l~~~~~~~~~~~~l~~a~~~~g~~~ 319 (713)
..+. ...+. ..+ ...+...|........++..+. ..+..
T Consensus 233 ~~~~~~l~~~a~----------------------------~~~---------~~~l~~~~~~~~~~~~~~~~~~-~~~~~ 274 (615)
T TIGR00990 233 QAVERLLKKFAE----------------------------SKA---------KEILETKPENLPSVTFVGNYLQ-SFRPK 274 (615)
T ss_pred HHHHHHHHHHHH----------------------------HHH---------HHHHhcCCCCCCCHHHHHHHHH-HccCC
Confidence 0000 00000 000 0111222222222222222211 11111
Q ss_pred HHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHH---hcCCChHHHHHHHHHHHHhh--hccCcchH
Q 035707 320 TLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICA---ENKVCIEEGITYARKALSML--QGKCRQMA 394 (713)
Q Consensus 320 ~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~---~~g~~~~~A~~~~~~al~~~--~~~~~~~~ 394 (713)
.....++.... .+|.....++.++.... ..+.+. +|+..|++++... .|...
T Consensus 275 ~~~~~~~~~~~-------------------~~~~~~~~~~~l~~~~~e~~~~~~y~-~A~~~~~~al~~~~~~~~~a--- 331 (615)
T TIGR00990 275 PRPAGLEDSNE-------------------LDEETGNGQLQLGLKSPESKADESYE-EAARAFEKALDLGKLGEKEA--- 331 (615)
T ss_pred cchhhhhcccc-------------------cccccccchHHHHHHHHHhhhhhhHH-HHHHHHHHHHhcCCCChhhH---
Confidence 11111111111 12333344444443332 346788 9999999999821 24444
Q ss_pred HHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 035707 395 SIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARS 474 (713)
Q Consensus 395 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 474 (713)
.++..+|.++ ...|++++|+..|++++ .++|.+..+++.+|.++...|++++|+..|+++++.+|++
T Consensus 332 -~a~~~lg~~~-----------~~~g~~~eA~~~~~kal-~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 398 (615)
T TIGR00990 332 -IALNLRGTFK-----------CLKGKHLEALADLSKSI-ELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSED 398 (615)
T ss_pred -HHHHHHHHHH-----------HHcCCHHHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 8899999999 78899999999999999 9999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 035707 475 NVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKN 554 (713)
Q Consensus 475 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 554 (713)
+ .++..+|.++...|++++|+..|+++++.+| ++...+..+|.++...|++++|+..|++++...|.+
T Consensus 399 ~-~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P--~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~--------- 466 (615)
T TIGR00990 399 P-DIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP--DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA--------- 466 (615)
T ss_pred H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc--cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------
Confidence 9 9999999999999999999999999999999 788899999999999999999999999999987654
Q ss_pred hhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHH------HHHHH-HHHHcCCHHHHHHHHHH
Q 035707 555 LVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGW------HSTGL-LYEAKGLQQEALVSFRK 627 (713)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------~~lg~-~~~~~g~~~eA~~~~~~ 627 (713)
+.++..+|.++...|++++|+..|++++.+.|.+...+ ...+. ++...|++++|+..+++
T Consensus 467 -------------~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~k 533 (615)
T TIGR00990 467 -------------PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEK 533 (615)
T ss_pred -------------hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 88999999999999999999999999999998753322 22233 34447999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHH
Q 035707 628 ALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTT 673 (713)
Q Consensus 628 al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~ 673 (713)
++.++|++..++..+|.++...|+++ +|+.+|++++++.++..+
T Consensus 534 Al~l~p~~~~a~~~la~~~~~~g~~~--eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 534 ALIIDPECDIAVATMAQLLLQQGDVD--EALKLFERAAELARTEGE 577 (615)
T ss_pred HHhcCCCcHHHHHHHHHHHHHccCHH--HHHHHHHHHHHHhccHHH
Confidence 99999999999999999999999997 999999999999887554
No 11
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-30 Score=275.87 Aligned_cols=451 Identities=15% Similarity=0.130 Sum_probs=373.9
Q ss_pred hhhhhccCchHHHHHHHHHHHHHHHHhcCCCCCCCCCcccchHHHHHHHHHHhHHHHHhcCChhHHHHHHHHHhcccCCC
Q 035707 158 TKSLQGLGRFEEACQSCKVILDTVEHALPEGLPGNHSIDCKLQETLNKAVELLPELYKLAGDPDETILSYRRALLYYWNL 237 (713)
Q Consensus 158 ~~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~~~~al~~~~~~ 237 (713)
+.-++-.|+|+.+......++.-. ....+...+.+.+|..|..+|++++|...|..++..+++
T Consensus 277 An~fyfK~dy~~v~~la~~ai~~t----------------~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d- 339 (1018)
T KOG2002|consen 277 ANHFYFKKDYERVWHLAEHAIKNT----------------ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADND- 339 (1018)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhh----------------hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCC-
Confidence 444555566666655554444311 112345567889999999999999999999999987433
Q ss_pred ChhHHHHHHHHHHHHHhhcCCCCCCCcccccccccccCCchhHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcC-
Q 035707 238 DIETTARIEKKFAVFLLYSGTDASPPNLRLQMELSFVPRNNIEEAVLLLLILLKKIVLGKIEWDPSIIDHLSFALSVSG- 316 (713)
Q Consensus 238 ~~~~~~~i~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~eeA~~ll~~~~~~~~l~~~~~~~~~~~~l~~a~~~~g- 316 (713)
...+ ....+..+++.+|.+++++..| ..++...|....++..||..|...+
T Consensus 340 -~~~l----------------------~~~GlgQm~i~~~dle~s~~~f-----Ekv~k~~p~~~etm~iLG~Lya~~~~ 391 (1018)
T KOG2002|consen 340 -NFVL----------------------PLVGLGQMYIKRGDLEESKFCF-----EKVLKQLPNNYETMKILGCLYAHSAK 391 (1018)
T ss_pred -Cccc----------------------cccchhHHHHHhchHHHHHHHH-----HHHHHhCcchHHHHHHHHhHHHhhhh
Confidence 1111 0123455788899999998877 6778899999999999999998886
Q ss_pred ---cHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcch
Q 035707 317 ---ELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQM 393 (713)
Q Consensus 317 ---~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~ 393 (713)
..+.+..++.+++.. .|.+..+|+.++.++....-+. . +..|..|+..+.......
T Consensus 392 ~~~~~d~a~~~l~K~~~~-------------------~~~d~~a~l~laql~e~~d~~~-s-L~~~~~A~d~L~~~~~~i 450 (1018)
T KOG2002|consen 392 KQEKRDKASNVLGKVLEQ-------------------TPVDSEAWLELAQLLEQTDPWA-S-LDAYGNALDILESKGKQI 450 (1018)
T ss_pred hhHHHHHHHHHHHHHHhc-------------------ccccHHHHHHHHHHHHhcChHH-H-HHHHHHHHHHHHHcCCCC
Confidence 456777777777664 4788889999998886665555 4 999999997554444445
Q ss_pred HHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhh-C----CCC-----HHHHHHHHHHHHHcCCHHHHHHH
Q 035707 394 ASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTM-R----ERD-----PYIIYHLCLENAEQRKLDVALYY 463 (713)
Q Consensus 394 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~----p~~-----~~~~~~la~~~~~~g~~~~A~~~ 463 (713)
.+..+..+|..+ +..|++.+|...|.+|. .. . ++. ....|++|.++-..++++.|.+.
T Consensus 451 p~E~LNNvaslh-----------f~~g~~~~A~~~f~~A~-~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~ 518 (1018)
T KOG2002|consen 451 PPEVLNNVASLH-----------FRLGNIEKALEHFKSAL-GKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEM 518 (1018)
T ss_pred CHHHHHhHHHHH-----------HHhcChHHHHHHHHHHh-hhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHH
Confidence 679999999999 89999999999999998 54 2 221 23589999999999999999999
Q ss_pred HHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 035707 464 AKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQ 543 (713)
Q Consensus 464 ~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 543 (713)
|..+++..|... +++..+|.+....+...+|..++..++..+. .++.++..+|.++....++..|.+-|+..++.-.
T Consensus 519 Yk~Ilkehp~YI-d~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~--~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~ 595 (1018)
T KOG2002|consen 519 YKSILKEHPGYI-DAYLRLGCMARDKNNLYEASLLLKDALNIDS--SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTS 595 (1018)
T ss_pred HHHHHHHCchhH-HHHHHhhHHHHhccCcHHHHHHHHHHHhccc--CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhc
Confidence 999999999999 9999999888889999999999999999987 7899999999999999999999999998887622
Q ss_pred hhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHH------------CCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 035707 544 FRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTS------------LSQWRDAEVCLSKSKAINPYSASGWHSTGLL 611 (713)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~------------~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 611 (713)
. ..++.+...||+++++ .+.+++|+++|.+++..+|.+..+-+.+|.+
T Consensus 596 ~--------------------~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiV 655 (1018)
T KOG2002|consen 596 T--------------------KTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIV 655 (1018)
T ss_pred c--------------------CCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhh
Confidence 1 2456777788887764 4567899999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhCCCC
Q 035707 612 YEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLD--RTNTTAWYNLGLLYKTYAGAS 689 (713)
Q Consensus 612 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~ 689 (713)
+...|++.+|...|.++.+-..++.++|.++|.+|..+|+|. .|++.|+.+++.. .+++.++..||.++++.|.
T Consensus 656 LA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~--~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~-- 731 (1018)
T KOG2002|consen 656 LAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYR--LAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK-- 731 (1018)
T ss_pred hhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHH--HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh--
Confidence 999999999999999999887788999999999999999997 9999999999853 4678999999999999999
Q ss_pred HHHHHHHHHHHHccccCCCCCCCC
Q 035707 690 ALEAVECFEAAALLEESAPVEPFR 713 (713)
Q Consensus 690 ~~~A~~~~~~a~~l~p~~~~~~f~ 713 (713)
+.+|.++..+|+.+.|.+|...|+
T Consensus 732 ~~eak~~ll~a~~~~p~~~~v~FN 755 (1018)
T KOG2002|consen 732 LQEAKEALLKARHLAPSNTSVKFN 755 (1018)
T ss_pred HHHHHHHHHHHHHhCCccchHHhH
Confidence 999999999999999999988774
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=1.1e-28 Score=280.05 Aligned_cols=584 Identities=12% Similarity=-0.004 Sum_probs=404.5
Q ss_pred cCcccccCCCCChHHHhhhhhhhccCC--HHHHHHHhhhHhhhcCCHHHHHhhhhcC---Cccccchhhhhhhh------
Q 035707 56 AGEMDAKVDNSNIEEAESSLRESGYLN--YEEARALLGRLEFQKGNIEAALHVFEGI---DVAAVTSRMKVSLS------ 124 (713)
Q Consensus 56 ~~~~~~~~~~~~~~~A~~~l~~~l~~~--~~~a~~llg~~~~~~g~~~~Al~~~~~~---~~~~~~~~~~~~~~------ 124 (713)
...+..|+..|++++|+..+++++.++ +...+.+||.+ +++++|..+|+++ ++.+..........
T Consensus 82 ~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~ 157 (987)
T PRK09782 82 LYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNA 157 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccch
Confidence 345578999999999999999999766 56666666666 9999999999975 22222111111111
Q ss_pred ---hhccccccCCCCCCCCCcchhHHHHHHHHHHHhhhhhhccCchHHHHHHHHHHHHHH----------HHhcCCCCCC
Q 035707 125 ---RRCDQNRRRSQSDAAPPMSMHAVSLLVEAIFLKTKSLQGLGRFEEACQSCKVILDTV----------EHALPEGLPG 191 (713)
Q Consensus 125 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~g~~~eA~~~~~~~l~~~----------~~~~~~~~~~ 191 (713)
.+.+....-.. ....+...|.. ...+.++.+|.++|++++|+..++++++.. +.+.-.++-.
T Consensus 158 l~y~q~eqAl~AL~-lr~~~~~~~~~----vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~ 232 (987)
T PRK09782 158 LRLAQLPVARAQLN-DATFAASPEGK----TLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD 232 (987)
T ss_pred hhhhhHHHHHHHHH-HhhhCCCCCcH----HHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH
Confidence 00000000000 00000000110 124556889999999999999998665421 0000000000
Q ss_pred CCCcccchHHH-------HHHHHHHhHHHHHhcCChhHHHHHHHHHhcccCC-CChhHHHHH---------------HHH
Q 035707 192 NHSIDCKLQET-------LNKAVELLPELYKLAGDPDETILSYRRALLYYWN-LDIETTARI---------------EKK 248 (713)
Q Consensus 192 ~~~~~~~~~~~-------~~~a~~~l~~~~~~~g~~~eA~~~~~~al~~~~~-~~~~~~~~i---------------~~~ 248 (713)
+ .+..+ -..++..+++.|.+.|+.++|...+++.--..+. +++..--.. .++
T Consensus 233 ----~-~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~ 307 (987)
T PRK09782 233 ----D-RLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQ 307 (987)
T ss_pred ----H-HHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhh
Confidence 0 00000 1123346677888899999888888775433222 111110000 000
Q ss_pred H-----------HHHHhhcCC--------CCCCCccccccccc-ccCCchhHHHHHHHHHHHHHHHhhcCCCcHHHHHHH
Q 035707 249 F-----------AVFLLYSGT--------DASPPNLRLQMELS-FVPRNNIEEAVLLLLILLKKIVLGKIEWDPSIIDHL 308 (713)
Q Consensus 249 ~-----------a~~ll~~~~--------~~~~~~~~~~~~~~-~~~~~~~eeA~~ll~~~~~~~~l~~~~~~~~~~~~l 308 (713)
+ +..++..+. ...|.+........ ....++..++...+ .......|.++....++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~-----~~~y~~~~~~~~~l~q~ 382 (987)
T PRK09782 308 FADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLA-----RLLYQQEPANLTRLDQL 382 (987)
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHH-----HHHHhcCCCCHHHHHHH
Confidence 0 111000000 00010000000000 11223333332222 23445668899999999
Q ss_pred HHHHHhcCcHHHHHHHHHhhCCCCCCchh---hHHHHHHHhhcccCCCChHHHHHHH------HHHHhcCCChHHHHHHH
Q 035707 309 SFALSVSGELWTLAHQVEELLPGVMGNKK---RYCTLALCYLGEENSDCNLELLVAS------KICAENKVCIEEGITYA 379 (713)
Q Consensus 309 ~~a~~~~g~~~~a~~~~e~~l~~~~~~~~---~~~~la~~~~~~~~p~~~~~~~~~a------~~~~~~g~~~~~A~~~~ 379 (713)
++.....|++.+|...|+.+.+....... ....++..|.+...+.++.-...++ .-|.-.|+.. ++...+
T Consensus 383 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~ 461 (987)
T PRK09782 383 TWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLP-GIADNC 461 (987)
T ss_pred HHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhh-hhhhhH
Confidence 99999999999999999999886332211 2235666666653333333332222 2344456665 544444
Q ss_pred HHHHHh--hhcc--CcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 035707 380 RKALSM--LQGK--CRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQR 455 (713)
Q Consensus 380 ~~al~~--~~~~--~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g 455 (713)
..+... ..|. +. .+++.+|.++ .. ++..+|+..|.+++ ...|++. ....+|..+...|
T Consensus 462 ~~~~~al~~~p~~~~~----~a~~~LG~~l-----------~~-~~~~eAi~a~~~Al-~~~Pd~~-~~L~lA~al~~~G 523 (987)
T PRK09782 462 PAIVRLLGDMSPSYDA----AAWNRLAKCY-----------RD-TLPGVALYAWLQAE-QRQPDAW-QHRAVAYQAYQVE 523 (987)
T ss_pred HHHHHhcccCCCCCCH----HHHHHHHHHH-----------Hh-CCcHHHHHHHHHHH-HhCCchH-HHHHHHHHHHHCC
Confidence 444441 3444 55 9999999999 44 78899999999999 9999764 4666788888999
Q ss_pred CHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHH
Q 035707 456 KLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETY 535 (713)
Q Consensus 456 ~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~ 535 (713)
++++|+..|++++...|. . ..+..+|.++...|++++|+.+++++++..| .....+..++......|++++|+..|
T Consensus 524 r~eeAi~~~rka~~~~p~-~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P--~~~~l~~~La~~l~~~Gr~~eAl~~~ 599 (987)
T PRK09782 524 DYATALAAWQKISLHDMS-N-EDLLAAANTAQAAGNGAARDRWLQQAEQRGL--GDNALYWWLHAQRYIPGQPELALNDL 599 (987)
T ss_pred CHHHHHHHHHHHhccCCC-c-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999998777555 4 5688999999999999999999999999988 56666666666666779999999999
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHc
Q 035707 536 VNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAK 615 (713)
Q Consensus 536 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 615 (713)
+++++.+|+ ..++..+|.++.+.|++++|+.+|++++.++|+++.++.++|.++...
T Consensus 600 ~~AL~l~P~-----------------------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~ 656 (987)
T PRK09782 600 TRSLNIAPS-----------------------ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDS 656 (987)
T ss_pred HHHHHhCCC-----------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 999999652 678999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 035707 616 GLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVE 695 (713)
Q Consensus 616 g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~ 695 (713)
|++++|+..|+++++.+|+++.++.++|.++...|+++ +|+..|+++++++|++..+....|++.....+ ++.|.+
T Consensus 657 G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~--eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~--~~~a~~ 732 (987)
T PRK09782 657 GDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMA--ATQHYARLVIDDIDNQALITPLTPEQNQQRFN--FRRLHE 732 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhcCCCCchhhhhhhHHHHHHHH--HHHHHH
Confidence 99999999999999999999999999999999999997 99999999999999999999999999999999 999999
Q ss_pred HHHHHHccccCCC
Q 035707 696 CFEAAALLEESAP 708 (713)
Q Consensus 696 ~~~~a~~l~p~~~ 708 (713)
.++++..++|+..
T Consensus 733 ~~~r~~~~~~~~~ 745 (987)
T PRK09782 733 EVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHhhcCccch
Confidence 9999999998765
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.98 E-value=2.2e-29 Score=280.31 Aligned_cols=341 Identities=13% Similarity=-0.033 Sum_probs=312.0
Q ss_pred HHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 035707 306 DHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICAENKVCIEEGITYARKALSM 385 (713)
Q Consensus 306 ~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~ 385 (713)
...+..+.+.|++..|...++.++.. .|+++.++..++......|+++ +|+..+++++.
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~-------------------~p~~~~~l~~l~~~~l~~g~~~-~A~~~l~~~l~- 104 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLT-------------------AKNGRDLLRRWVISPLASSQPD-AVLQVVNKLLA- 104 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHh-------------------CCCchhHHHHHhhhHhhcCCHH-HHHHHHHHHHH-
Confidence 34456678899999999999988763 6889999999999999999999 99999999999
Q ss_pred hhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 035707 386 LQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAK 465 (713)
Q Consensus 386 ~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 465 (713)
.+|.+. .++..+|.++ ...|++++|+..|++++ .++|+++.++..++.++...|++++|+..++
T Consensus 105 ~~P~~~----~a~~~la~~l-----------~~~g~~~~Ai~~l~~Al-~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~ 168 (656)
T PRK15174 105 VNVCQP----EDVLLVASVL-----------LKSKQYATVADLAEQAW-LAFSGNSQIFALHLRTLVLMDKELQAISLAR 168 (656)
T ss_pred hCCCCh----HHHHHHHHHH-----------HHcCCHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 899998 9999999999 88899999999999999 9999999999999999999999999999999
Q ss_pred HHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 035707 466 KLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFR 545 (713)
Q Consensus 466 ~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 545 (713)
+++...|+++ ..+..++ .+...|++++|+..+++++...|. ........++.++...|++++|+..|++++...|++
T Consensus 169 ~~~~~~P~~~-~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~-~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~ 245 (656)
T PRK15174 169 TQAQEVPPRG-DMIATCL-SFLNKSRLPEDHDLARALLPFFAL-ERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDG 245 (656)
T ss_pred HHHHhCCCCH-HHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCC-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 9999999987 7776654 488999999999999999988763 234455667889999999999999999999986644
Q ss_pred hhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHH----HHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHH
Q 035707 546 KKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRD----AEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEA 621 (713)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA 621 (713)
+.++..+|.++...|++++ |+..|+++++.+|+++.++..+|.++...|++++|
T Consensus 246 ----------------------~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA 303 (656)
T PRK15174 246 ----------------------AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKA 303 (656)
T ss_pred ----------------------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 8899999999999999986 89999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 035707 622 LVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAA 701 (713)
Q Consensus 622 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~ 701 (713)
+..+++++.++|+++.++..+|.++...|+++ +|+..|+++++.+|+++..+..+|.++...|+ +++|+..|++++
T Consensus 304 ~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~--eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~--~deA~~~l~~al 379 (656)
T PRK15174 304 IPLLQQSLATHPDLPYVRAMYARALRQVGQYT--AASDEFVQLAREKGVTSKWNRYAAAALLQAGK--TSEAESVFEHYI 379 (656)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHhCccchHHHHHHHHHHHHCCC--HHHHHHHHHHHH
Confidence 99999999999999999999999999999997 99999999999999998878888999999999 999999999999
Q ss_pred ccccCCCCCCC
Q 035707 702 LLEESAPVEPF 712 (713)
Q Consensus 702 ~l~p~~~~~~f 712 (713)
+..|+++...|
T Consensus 380 ~~~P~~~~~~~ 390 (656)
T PRK15174 380 QARASHLPQSF 390 (656)
T ss_pred HhChhhchhhH
Confidence 99999875544
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=5.6e-28 Score=255.50 Aligned_cols=519 Identities=16% Similarity=0.075 Sum_probs=382.1
Q ss_pred hHHHhhhhhhhcc--CCHHHHHHHhhhHhhhcCCHHHHHhhhhcCCccccchhhhhhhhhhccccccCCCCCCCCCcchh
Q 035707 68 IEEAESSLRESGY--LNYEEARALLGRLEFQKGNIEAALHVFEGIDVAAVTSRMKVSLSRRCDQNRRRSQSDAAPPMSMH 145 (713)
Q Consensus 68 ~~~A~~~l~~~l~--~~~~~a~~llg~~~~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (713)
++.|-..|.-++. +++.-+.+.-+++.|.+|||-+|+..|.++... .|...+
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~i--np~~~a------------------------ 199 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRI--NPACKA------------------------ 199 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhc--CcccCC------------------------
Confidence 4778888888874 445555555556788888888888888863110 010000
Q ss_pred HHHHHHHHHHHhhhhhhccCchHHHHHHHHHHHHHHHHhcCCCCCCCCCcccchHHHHHHHHHHhHHHHHhc---CChhH
Q 035707 146 AVSLLVEAIFLKTKSLQGLGRFEEACQSCKVILDTVEHALPEGLPGNHSIDCKLQETLNKAVELLPELYKLA---GDPDE 222 (713)
Q Consensus 146 ~~~~~~e~~~~~~~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~---g~~~e 222 (713)
+.....|.|+.++|+.+.|...|..++.+.+ +...++-.||.+-... ..+..
T Consensus 200 ------D~rIgig~Cf~kl~~~~~a~~a~~ralqLdp-------------------~~v~alv~L~~~~l~~~d~~s~~~ 254 (1018)
T KOG2002|consen 200 ------DVRIGIGHCFWKLGMSEKALLAFERALQLDP-------------------TCVSALVALGEVDLNFNDSDSYKK 254 (1018)
T ss_pred ------CccchhhhHHHhccchhhHHHHHHHHHhcCh-------------------hhHHHHHHHHHHHHHccchHHHHH
Confidence 1112337788888888888888888776321 1222333444443322 22334
Q ss_pred HHHHHHHHhcccCCCChhHHHHHHHHHHHHHhhcCCCCCCCcccccccccccCCchhHHHHHHHHHHHHHHHhhcCCCcH
Q 035707 223 TILSYRRALLYYWNLDIETTARIEKKFAVFLLYSGTDASPPNLRLQMELSFVPRNNIEEAVLLLLILLKKIVLGKIEWDP 302 (713)
Q Consensus 223 A~~~~~~al~~~~~~~~~~~~~i~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~eeA~~ll~~~~~~~~l~~~~~~~ 302 (713)
++..+.++-..++ ..|.+...+.+.|+-.++++.++.+....+.... .-+.-+
T Consensus 255 ~~~ll~~ay~~n~-------------------------~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~--~~~~~a 307 (1018)
T KOG2002|consen 255 GVQLLQRAYKENN-------------------------ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE--NKSIKA 307 (1018)
T ss_pred HHHHHHHHHhhcC-------------------------CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh--hhHHHH
Confidence 4444444433311 2444455666667778888888777654433321 111234
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCC-hHHHHHHHHHHHhcCCChHHHHHHHHH
Q 035707 303 SIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDC-NLELLVASKICAENKVCIEEGITYARK 381 (713)
Q Consensus 303 ~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~-~~~~~~~a~~~~~~g~~~~~A~~~~~~ 381 (713)
..++.+|.+|-..|+++.|..+|-++++. +|++ +-.++-+|..+...|++. .++.+|++
T Consensus 308 es~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~-------------------~~d~~~l~~~GlgQm~i~~~dle-~s~~~fEk 367 (1018)
T KOG2002|consen 308 ESFYQLGRSYHAQGDFEKAFKYYMESLKA-------------------DNDNFVLPLVGLGQMYIKRGDLE-ESKFCFEK 367 (1018)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHcc-------------------CCCCccccccchhHHHHHhchHH-HHHHHHHH
Confidence 55889999999999999999999998875 4555 677888999999999999 99999999
Q ss_pred HHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 035707 382 ALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVAL 461 (713)
Q Consensus 382 al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~ 461 (713)
+++ ..|++. .+...||..|...+ ......+.|..++.+++ ...|.+.++|..++.++....-+ .++
T Consensus 368 v~k-~~p~~~----etm~iLG~Lya~~~-------~~~~~~d~a~~~l~K~~-~~~~~d~~a~l~laql~e~~d~~-~sL 433 (1018)
T KOG2002|consen 368 VLK-QLPNNY----ETMKILGCLYAHSA-------KKQEKRDKASNVLGKVL-EQTPVDSEAWLELAQLLEQTDPW-ASL 433 (1018)
T ss_pred HHH-hCcchH----HHHHHHHhHHHhhh-------hhhHHHHHHHHHHHHHH-hcccccHHHHHHHHHHHHhcChH-HHH
Confidence 999 889988 99999999994332 11235688999999999 99999999999999988665544 448
Q ss_pred HHHHHHHhh-----hcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-----cCCC---CcHHHHHHHHHHHHHhCCH
Q 035707 462 YYAKKLLNL-----EARSNVKGYLLLARVLSAQKQFADAESVINDSLDQ-----TGKW---DQGELLRTKAKLQIAQGRL 528 (713)
Q Consensus 462 ~~~~~~l~~-----~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~~~la~~~~~~g~~ 528 (713)
..|..++.. .+ .+....+.+|..++..|++.+|...|..++.. +++. .+....+++|.++...+++
T Consensus 434 ~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~ 512 (1018)
T KOG2002|consen 434 DAYGNALDILESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDT 512 (1018)
T ss_pred HHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhh
Confidence 889888753 23 33378999999999999999999999999876 1111 1234588999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhh------------hcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 035707 529 KNAIETYVNLLAVLQFRKKSFSAGKNLVK------------NRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKA 596 (713)
Q Consensus 529 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 596 (713)
+.|.+.|..++...|...+.........+ ..+......++.+|..+|.+|....+|..|..-|+..++
T Consensus 513 ~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~ 592 (1018)
T KOG2002|consen 513 EVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILK 592 (1018)
T ss_pred hHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHh
Confidence 99999999999999988766544322221 123344556688999999999999999999887777665
Q ss_pred cCC--CChhHHHHHHHHHHH------------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 035707 597 INP--YSASGWHSTGLLYEA------------KGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLT 662 (713)
Q Consensus 597 ~~p--~~~~~~~~lg~~~~~------------~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~ 662 (713)
... .++.+...||.++.. .+.+++|++.|.++|+.+|.+..+-+.+|.++...|++. +|+.+|.
T Consensus 593 ~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~--~A~dIFs 670 (1018)
T KOG2002|consen 593 KTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFS--EARDIFS 670 (1018)
T ss_pred hhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCch--HHHHHHH
Confidence 432 355666777887653 356789999999999999999999999999999999998 9999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcc
Q 035707 663 DALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALL 703 (713)
Q Consensus 663 ~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l 703 (713)
++.+.-.+++.+|.++|.||..+|+ |..|++.|+.++..
T Consensus 671 qVrEa~~~~~dv~lNlah~~~e~~q--y~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 671 QVREATSDFEDVWLNLAHCYVEQGQ--YRLAIQMYENCLKK 709 (1018)
T ss_pred HHHHHHhhCCceeeeHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 9998877788999999999999999 99999999999874
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.97 E-value=4.9e-28 Score=269.52 Aligned_cols=339 Identities=13% Similarity=0.089 Sum_probs=299.1
Q ss_pred HHHhhCCCCCCchhhHHHHHHHhhcc-----cCCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHH
Q 035707 324 QVEELLPGVMGNKKRYCTLALCYLGE-----ENSDCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIAN 398 (713)
Q Consensus 324 ~~e~~l~~~~~~~~~~~~la~~~~~~-----~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 398 (713)
.|.++.|...-..+.|..+.+.+... ...++...+...+..+...|++. +|...++.++. ..|.+. .++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~A~~l~~~~l~-~~p~~~----~~l 79 (656)
T PRK15174 6 TFKKISPTTLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETD-VGLTLLSDRVL-TAKNGR----DLL 79 (656)
T ss_pred hhhccCchhhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcc-hhHHHhHHHHH-hCCCch----hHH
Confidence 34445455555556666655554443 22344555666777889999999 99999999999 899998 999
Q ss_pred HHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHH
Q 035707 399 CLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKG 478 (713)
Q Consensus 399 ~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 478 (713)
+.+|.+. ...|++++|+..|++++ ..+|+++.++..+|.++...|++++|+..|++++..+|++. .+
T Consensus 80 ~~l~~~~-----------l~~g~~~~A~~~l~~~l-~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~-~a 146 (656)
T PRK15174 80 RRWVISP-----------LASSQPDAVLQVVNKLL-AVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNS-QI 146 (656)
T ss_pred HHHhhhH-----------hhcCCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HH
Confidence 9999999 78999999999999999 99999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 035707 479 YLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKN 558 (713)
Q Consensus 479 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 558 (713)
+..++.++...|++++|+..+++++...| +...++...+ .+...|++++|+..+++++...|.
T Consensus 147 ~~~la~~l~~~g~~~eA~~~~~~~~~~~P--~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~-------------- 209 (656)
T PRK15174 147 FALHLRTLVLMDKELQAISLARTQAQEVP--PRGDMIATCL-SFLNKSRLPEDHDLARALLPFFAL-------------- 209 (656)
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhCC--CCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCC--------------
Confidence 99999999999999999999999999988 5566665554 478899999999999999887542
Q ss_pred cccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHH----HHHHHHHHHhcCCC
Q 035707 559 RQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQE----ALVSFRKALDAEPN 634 (713)
Q Consensus 559 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~e----A~~~~~~al~~~p~ 634 (713)
.....+..++.++...|++++|+..|++++..+|+++.+++.+|.++...|++++ |+..|++++.++|+
T Consensus 210 -------~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~ 282 (656)
T PRK15174 210 -------ERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD 282 (656)
T ss_pred -------cchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC
Confidence 1133445678899999999999999999999999999999999999999999986 89999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCCCC
Q 035707 635 HVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALLEESAPV 709 (713)
Q Consensus 635 ~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~~~ 709 (713)
++.++..+|.++...|+++ +|+..++++++++|+++.++..+|.++...|+ +++|+..|++++...|+++.
T Consensus 283 ~~~a~~~lg~~l~~~g~~~--eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~--~~eA~~~l~~al~~~P~~~~ 353 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNE--KAIPLLQQSLATHPDLPYVRAMYARALRQVGQ--YTAASDEFVQLAREKGVTSK 353 (656)
T ss_pred CHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCccchH
Confidence 9999999999999999998 99999999999999999999999999999999 99999999999999998753
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.96 E-value=1.1e-25 Score=256.28 Aligned_cols=404 Identities=14% Similarity=0.014 Sum_probs=286.5
Q ss_pred hhhhccCchHHHHHHHHHHHHHHHHhcCCCCCCCCCcccchHHHHHHHHHHhHHHHHhcCChhHHHHHHHHHhcccCCCC
Q 035707 159 KSLQGLGRFEEACQSCKVILDTVEHALPEGLPGNHSIDCKLQETLNKAVELLPELYKLAGDPDETILSYRRALLYYWNLD 238 (713)
Q Consensus 159 ~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~~~~al~~~~~~~ 238 (713)
.+....|++++|++.|..+.... |. ...++..++.++...|++++|+..|++++...|+
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~--------~~-----------~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-- 81 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHM--------QL-----------PARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-- 81 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC--------CC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--
Confidence 34456788888887777664310 11 1235677888888889999998888888775322
Q ss_pred hhHHHHHHHHHHHHHhhcCCCCCCCcccccccccccCCchhHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCcH
Q 035707 239 IETTARIEKKFAVFLLYSGTDASPPNLRLQMELSFVPRNNIEEAVLLLLILLKKIVLGKIEWDPSIIDHLSFALSVSGEL 318 (713)
Q Consensus 239 ~~~~~~i~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~eeA~~ll~~~~~~~~l~~~~~~~~~~~~l~~a~~~~g~~ 318 (713)
++.+...++.++...|++
T Consensus 82 --------------------------------------------------------------~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 82 --------------------------------------------------------------NDDYQRGLILTLADAGQY 99 (765)
T ss_pred --------------------------------------------------------------CHHHHHHHHHHHHHCCCH
Confidence 333344556666777778
Q ss_pred HHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHH
Q 035707 319 WTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIAN 398 (713)
Q Consensus 319 ~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 398 (713)
++|...+++++.. +|+++. +..+|.++...|++. +|+..++++++ ..|.+. .++
T Consensus 100 ~eA~~~l~~~l~~-------------------~P~~~~-~~~la~~l~~~g~~~-~Al~~l~~al~-~~P~~~----~~~ 153 (765)
T PRK10049 100 DEALVKAKQLVSG-------------------APDKAN-LLALAYVYKRAGRHW-DELRAMTQALP-RAPQTQ----QYP 153 (765)
T ss_pred HHHHHHHHHHHHh-------------------CCCCHH-HHHHHHHHHHCCCHH-HHHHHHHHHHH-hCCCCH----HHH
Confidence 8888877777653 577777 777888888888888 88888888888 788877 777
Q ss_pred HHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHH-----HHHHHHHHHH-----HcCCH---HHHHHHHH
Q 035707 399 CLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPY-----IIYHLCLENA-----EQRKL---DVALYYAK 465 (713)
Q Consensus 399 ~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~-----~~~~la~~~~-----~~g~~---~~A~~~~~ 465 (713)
..++.++ ...+..++|+..++++. . .|.... ....+..... ..+++ ++|+..++
T Consensus 154 ~~la~~l-----------~~~~~~e~Al~~l~~~~-~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~ 220 (765)
T PRK10049 154 TEYVQAL-----------RNNRLSAPALGAIDDAN-L-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYD 220 (765)
T ss_pred HHHHHHH-----------HHCCChHHHHHHHHhCC-C-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHH
Confidence 7788887 66677788888887666 4 443211 1112222221 22334 67888888
Q ss_pred HHHhhhcCCchH-------HHHHHHHHHHHcCCHHHHHHHHHHHhhccCC-CCcHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 035707 466 KLLNLEARSNVK-------GYLLLARVLSAQKQFADAESVINDSLDQTGK-WDQGELLRTKAKLQIAQGRLKNAIETYVN 537 (713)
Q Consensus 466 ~~l~~~p~~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 537 (713)
.+++..|.++ . +.......+...|++++|+..|+++++..+. |.. +...++.++...|++++|+..|++
T Consensus 221 ~ll~~~~~~p-~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~--a~~~la~~yl~~g~~e~A~~~l~~ 297 (765)
T PRK10049 221 ALEALWHDNP-DATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW--AQRWVASAYLKLHQPEKAQSILTE 297 (765)
T ss_pred HHHhhcccCC-ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH--HHHHHHHHHHhcCCcHHHHHHHHH
Confidence 8886644433 2 1111122345678888888888888877532 222 333458888888888888888888
Q ss_pred HHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---------------h
Q 035707 538 LLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYS---------------A 602 (713)
Q Consensus 538 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~ 602 (713)
+++..|.+ ..........++.++...|++++|+..++++....|.. .
T Consensus 298 ~l~~~p~~------------------~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~ 359 (765)
T PRK10049 298 LFYHPETI------------------ADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWL 359 (765)
T ss_pred HhhcCCCC------------------CCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHH
Confidence 87764421 01113456667777788888888888888888776631 2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 035707 603 SGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLY 682 (713)
Q Consensus 603 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~ 682 (713)
.++..++.++...|++++|+..+++++...|+++.++..+|.++...|+++ +|+..+++++.++|+++.+++.+|.++
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~--~A~~~l~~al~l~Pd~~~l~~~~a~~a 437 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPR--AAENELKKAEVLEPRNINLEVEQAWTA 437 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 456778888888888888888888888888888888888888888888886 888888888888888888888888888
Q ss_pred HHhCCCCHHHHHHHHHHHHccccCCCC
Q 035707 683 KTYAGASALEAVECFEAAALLEESAPV 709 (713)
Q Consensus 683 ~~~g~~~~~~A~~~~~~a~~l~p~~~~ 709 (713)
...|+ +++|...++++++..|++|.
T Consensus 438 l~~~~--~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 438 LDLQE--WRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred HHhCC--HHHHHHHHHHHHHhCCCCHH
Confidence 88888 88888888888888888875
No 17
>PLN03077 Protein ECB2; Provisional
Probab=99.95 E-value=1.6e-24 Score=252.24 Aligned_cols=531 Identities=12% Similarity=-0.023 Sum_probs=350.9
Q ss_pred cccCCCCChHHHhhhhhhhccCCHHHHHHHhhhHhhhcCCHHHHHhhhhcCCccccchhhhh--hhhh----hccccccC
Q 035707 60 DAKVDNSNIEEAESSLRESGYLNYEEARALLGRLEFQKGNIEAALHVFEGIDVAAVTSRMKV--SLSR----RCDQNRRR 133 (713)
Q Consensus 60 ~~~~~~~~~~~A~~~l~~~l~~~~~~a~~llg~~~~~~g~~~~Al~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~ 133 (713)
..|...|+++.|...|.+.-..| ..+|-.|-..+.+.|++++|+.+|+.+....+.|.... .+.. ......++
T Consensus 129 ~~~~~~g~~~~A~~~f~~m~~~d-~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 129 SMFVRFGELVHAWYVFGKMPERD-LFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred HHHHhCCChHHHHHHHhcCCCCC-eeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 34567888888888888876554 44667777888899999999999986532222222111 1111 00000000
Q ss_pred CCCCCCCCcchhHHHH------HHHHHHHhhhhhhccCchHHHHHHHHHHHHHHHHhcCCCCCCCCCcccchHHHHHHHH
Q 035707 134 SQSDAAPPMSMHAVSL------LVEAIFLKTKSLQGLGRFEEACQSCKVILDTVEHALPEGLPGNHSIDCKLQETLNKAV 207 (713)
Q Consensus 134 ~~~~~~~~~~~~~~~~------~~e~~~~~~~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 207 (713)
.+|..-+ -...+...-.+|.+.|++++|.+.|+.+.. |+. ..+
T Consensus 208 ---------~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----------~d~------------~s~ 256 (857)
T PLN03077 208 ---------EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----------RDC------------ISW 256 (857)
T ss_pred ---------HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----------CCc------------chh
Confidence 0110000 001223334567889999999988876421 221 134
Q ss_pred HHhHHHHHhcCChhHHHHHHHHHhcccCCCChhHHHHHHH------------HHHHHHhhcCCCCCCCcccccccccccC
Q 035707 208 ELLPELYKLAGDPDETILSYRRALLYYWNLDIETTARIEK------------KFAVFLLYSGTDASPPNLRLQMELSFVP 275 (713)
Q Consensus 208 ~~l~~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~i~~------------~~a~~ll~~~~~~~~~~~~~~~~~~~~~ 275 (713)
..+...|.+.|++++|+..|++|...+..||..++..+.. ++.......|.. ....+...+...|..
T Consensus 257 n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~-~d~~~~n~Li~~y~k 335 (857)
T PLN03077 257 NAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFA-VDVSVCNSLIQMYLS 335 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc-cchHHHHHHHHHHHh
Confidence 4566789999999999999999999999999888876632 222222333332 111122344555666
Q ss_pred CchhHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCCh
Q 035707 276 RNNIEEAVLLLLILLKKIVLGKIEWDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCN 355 (713)
Q Consensus 276 ~~~~eeA~~ll~~~~~~~~l~~~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~ 355 (713)
.|++++|..+|..+ ...+...|+.+..+|.+.|++++|.+.|+++.... ..|+..
T Consensus 336 ~g~~~~A~~vf~~m--------~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g-----------------~~Pd~~ 390 (857)
T PLN03077 336 LGSWGEAEKVFSRM--------ETKDAVSWTAMISGYEKNGLPDKALETYALMEQDN-----------------VSPDEI 390 (857)
T ss_pred cCCHHHHHHHHhhC--------CCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC-----------------CCCCce
Confidence 66666666554221 12345556666666666666666666666553321 234443
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHh
Q 035707 356 LELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKT 435 (713)
Q Consensus 356 ~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 435 (713)
.....+ ..|...|+++ +|.+++..+++.....+. .++..|...| .+.|++++|.+.|++..
T Consensus 391 t~~~ll-~a~~~~g~~~-~a~~l~~~~~~~g~~~~~----~~~n~Li~~y-----------~k~g~~~~A~~vf~~m~-- 451 (857)
T PLN03077 391 TIASVL-SACACLGDLD-VGVKLHELAERKGLISYV----VVANALIEMY-----------SKCKCIDKALEVFHNIP-- 451 (857)
T ss_pred eHHHHH-HHHhccchHH-HHHHHHHHHHHhCCCcch----HHHHHHHHHH-----------HHcCCHHHHHHHHHhCC--
Confidence 333333 3566777777 777777777763333333 5666666777 56666677777766443
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCc----------------------------------hHHHHH
Q 035707 436 MRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSN----------------------------------VKGYLL 481 (713)
Q Consensus 436 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----------------------------------~~~~~~ 481 (713)
..+...|..+...|.+.|++++|+..|+++....+.+. ......
T Consensus 452 --~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~na 529 (857)
T PLN03077 452 --EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA 529 (857)
T ss_pred --CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechH
Confidence 33455666666666777777777777666654211111 023344
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhccc
Q 035707 482 LARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQN 561 (713)
Q Consensus 482 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 561 (713)
+...|.+.|++++|...|+.. + .+...|..+...|...|+.++|++.|+++.+...
T Consensus 530 Li~~y~k~G~~~~A~~~f~~~----~--~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~------------------ 585 (857)
T PLN03077 530 LLDLYVRCGRMNYAWNQFNSH----E--KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV------------------ 585 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhc----C--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------------------
Confidence 557778888888888888775 2 3677888888899999999999999998876421
Q ss_pred CCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 035707 562 HDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINP--YSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSL 639 (713)
Q Consensus 562 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 639 (713)
..+..++..+...+.+.|++++|..+|+.+.+..+ .+...|..+..++.+.|++++|.+.+++. ...|+ +.+|
T Consensus 586 ---~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~ 660 (857)
T PLN03077 586 ---NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVW 660 (857)
T ss_pred ---CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHH
Confidence 12255677777889999999999999999884432 24578899999999999999999999886 34555 6778
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHc
Q 035707 640 VSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAAL 702 (713)
Q Consensus 640 ~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~ 702 (713)
..+-..+...|+.+ .+....+++++++|+++..+..++++|...|+ +++|.+..+...+
T Consensus 661 ~aLl~ac~~~~~~e--~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~--~~~a~~vr~~M~~ 719 (857)
T PLN03077 661 GALLNACRIHRHVE--LGELAAQHIFELDPNSVGYYILLCNLYADAGK--WDEVARVRKTMRE 719 (857)
T ss_pred HHHHHHHHHcCChH--HHHHHHHHHHhhCCCCcchHHHHHHHHHHCCC--hHHHHHHHHHHHH
Confidence 88888888888876 88888999999999999999999999999999 9999999988765
No 18
>PLN03077 Protein ECB2; Provisional
Probab=99.95 E-value=1.1e-23 Score=245.10 Aligned_cols=568 Identities=13% Similarity=0.020 Sum_probs=383.9
Q ss_pred CcccccCCCCChHHHhhhhhhhccC---CHHHHHHHhhhHhhhcCCHHHHHhhhhcCCccccchhhhhhhhhhccccccC
Q 035707 57 GEMDAKVDNSNIEEAESSLRESGYL---NYEEARALLGRLEFQKGNIEAALHVFEGIDVAAVTSRMKVSLSRRCDQNRRR 133 (713)
Q Consensus 57 ~~~~~~~~~~~~~~A~~~l~~~l~~---~~~~a~~llg~~~~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (713)
.....+...|++++|...|++.... ....++..+.+.+...++++.|.+++..+......+.
T Consensus 56 ~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 120 (857)
T PLN03077 56 SQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLG--------------- 120 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCC---------------
Confidence 3456678888999999988887653 2445555666677788888888888875421111000
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHhhhhhhccCchHHHHHHHHHHHHHHHHhcCCCCCCCCCcccchHHHHHHHHHHhHHH
Q 035707 134 SQSDAAPPMSMHAVSLLVEAIFLKTKSLQGLGRFEEACQSCKVILDTVEHALPEGLPGNHSIDCKLQETLNKAVELLPEL 213 (713)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~ 213 (713)
....+ ..-..|.+.|++++|.+.|+.+.. |+.. .+..+...
T Consensus 121 ----------~~~~n-------~li~~~~~~g~~~~A~~~f~~m~~----------~d~~------------~~n~li~~ 161 (857)
T PLN03077 121 ----------VRLGN-------AMLSMFVRFGELVHAWYVFGKMPE----------RDLF------------SWNVLVGG 161 (857)
T ss_pred ----------chHHH-------HHHHHHHhCCChHHHHHHHhcCCC----------CCee------------EHHHHHHH
Confidence 11011 112335577888888777665421 2211 34456677
Q ss_pred HHhcCChhHHHHHHHHHhcccCCCChhHHHHHH------------HHHHHHHhhcCCCCCCCcccccccccccCCchhHH
Q 035707 214 YKLAGDPDETILSYRRALLYYWNLDIETTARIE------------KKFAVFLLYSGTDASPPNLRLQMELSFVPRNNIEE 281 (713)
Q Consensus 214 ~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~i~------------~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ee 281 (713)
|.+.|++++|+..|++|...+..||..++..+. .+++..++..|... .+.+...+...|...|++++
T Consensus 162 ~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~n~Li~~y~k~g~~~~ 240 (857)
T PLN03077 162 YAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFEL-DVDVVNALITMYVKCGDVVS 240 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCc-ccchHhHHHHHHhcCCCHHH
Confidence 888888888888888888877778877776552 22233333333321 11122333334444444444
Q ss_pred HHHHHHHH---------------------------HHHHHhhcCCCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCC-C
Q 035707 282 AVLLLLIL---------------------------LKKIVLGKIEWDPSIIDHLSFALSVSGELWTLAHQVEELLPGV-M 333 (713)
Q Consensus 282 A~~ll~~~---------------------------~~~~~l~~~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~-~ 333 (713)
|..+|..+ +..+.......+..++..+..++.+.|+.+.+.+.+..+.+.. .
T Consensus 241 A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~ 320 (857)
T PLN03077 241 ARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFA 320 (857)
T ss_pred HHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc
Confidence 44443211 1222233455677777777778888888888888777766543 3
Q ss_pred CchhhHHHHHHHhhcc------------cCCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHH
Q 035707 334 GNKKRYCTLALCYLGE------------ENSDCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLL 401 (713)
Q Consensus 334 ~~~~~~~~la~~~~~~------------~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~l 401 (713)
++...+..+...|.+. ....+...|..+...|.+.|+++ +|+.+|+++.......+. ..+..+
T Consensus 321 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~-~A~~lf~~M~~~g~~Pd~----~t~~~l 395 (857)
T PLN03077 321 VDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPD-KALETYALMEQDNVSPDE----ITIASV 395 (857)
T ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHH-HHHHHHHHHHHhCCCCCc----eeHHHH
Confidence 4555666677666655 33346678888889999999999 999999998763322333 445445
Q ss_pred HHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHH
Q 035707 402 GVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMR-ERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYL 480 (713)
Q Consensus 402 g~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 480 (713)
-..+ ...|++++|.+++..+. +.. ..+..++..+...|.+.|++++|.+.|+++.+ .+. .+|.
T Consensus 396 l~a~-----------~~~g~~~~a~~l~~~~~-~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~-vs~~ 459 (857)
T PLN03077 396 LSAC-----------ACLGDLDVGVKLHELAE-RKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDV-ISWT 459 (857)
T ss_pred HHHH-----------hccchHHHHHHHHHHHH-HhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCe-eeHH
Confidence 4566 57788899999999999 654 45677889999999999999999999998753 344 7899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhh--------h
Q 035707 481 LLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSA--------G 552 (713)
Q Consensus 481 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~--------~ 552 (713)
.+...+...|++++|+..|+++....+ .+...+..+...+...|..+.+.+.+..+++..-........ .
T Consensus 460 ~mi~~~~~~g~~~eA~~lf~~m~~~~~--pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~ 537 (857)
T PLN03077 460 SIIAGLRLNNRCFEALIFFRQMLLTLK--PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRC 537 (857)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhCCC--CCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHc
Confidence 999999999999999999999986432 345555555555556666666666655554432111000000 0
Q ss_pred hhhhhh-cccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 035707 553 KNLVKN-RQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAI--NPYSASGWHSTGLLYEAKGLQQEALVSFRKAL 629 (713)
Q Consensus 553 ~~~~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 629 (713)
+.+... ........+..+|..+...|...|+.++|+.+|+++.+. .| +..++..+-..+...|+.++|..+|+.+.
T Consensus 538 G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 538 GRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-DEVTFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred CCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 000000 000000334788999999999999999999999998874 45 45567777778999999999999999988
Q ss_pred hcC--CCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCC
Q 035707 630 DAE--PNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALLEESA 707 (713)
Q Consensus 630 ~~~--p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~ 707 (713)
+.. ..+...+..+..++.+.|+.+ +|.+++++. ...|+ +.+|..|-..+...|+ .+.+....+++++++|++
T Consensus 617 ~~~gi~P~~~~y~~lv~~l~r~G~~~--eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~--~e~~e~~a~~l~~l~p~~ 690 (857)
T PLN03077 617 EKYSITPNLKHYACVVDLLGRAGKLT--EAYNFINKM-PITPD-PAVWGALLNACRIHRH--VELGELAAQHIFELDPNS 690 (857)
T ss_pred HHhCCCCchHHHHHHHHHHHhCCCHH--HHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCC--hHHHHHHHHHHHhhCCCC
Confidence 432 234678999999999999987 999999875 34554 6789888888999999 999999999999999987
Q ss_pred CC
Q 035707 708 PV 709 (713)
Q Consensus 708 ~~ 709 (713)
+.
T Consensus 691 ~~ 692 (857)
T PLN03077 691 VG 692 (857)
T ss_pred cc
Confidence 64
No 19
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=8.7e-26 Score=231.09 Aligned_cols=302 Identities=17% Similarity=0.143 Sum_probs=269.7
Q ss_pred HHHHHHH--HhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhh
Q 035707 359 LVASKIC--AENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTM 436 (713)
Q Consensus 359 ~~~a~~~--~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 436 (713)
..+|..| ..+-++. +|+..|.+ +-...++.. .+...+|..| +..++|++|..+|+.+- +.
T Consensus 321 r~~~~~~~~~s~y~~~-~A~~~~~k-lp~h~~nt~----wvl~q~Gray-----------FEl~~Y~~a~~~F~~~r-~~ 382 (638)
T KOG1126|consen 321 RGLGEGYRSLSQYNCR-EALNLFEK-LPSHHYNTG----WVLSQLGRAY-----------FELIEYDQAERIFSLVR-RI 382 (638)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHh-hHHhcCCch----HHHHHHHHHH-----------HHHHHHHHHHHHHHHHH-hh
Confidence 3344443 3344566 89999988 442455545 8889999999 78899999999999998 99
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHH
Q 035707 437 RERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLR 516 (713)
Q Consensus 437 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 516 (713)
.|-..+..-....++....+--+---..+..+..+|..+ .+|..+|.++.-+++++.|++.|+++++++| ....++.
T Consensus 383 ~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sP-esWca~GNcfSLQkdh~~Aik~f~RAiQldp--~faYayT 459 (638)
T KOG1126|consen 383 EPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSP-ESWCALGNCFSLQKDHDTAIKCFKRAIQLDP--RFAYAYT 459 (638)
T ss_pred ccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCc-HHHHHhcchhhhhhHHHHHHHHHHHhhccCC--ccchhhh
Confidence 987766665566666666655444455677788899999 9999999999999999999999999999999 7889999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 035707 517 TKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKA 596 (713)
Q Consensus 517 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 596 (713)
.+|.-+.....++.|...|+.++..+|.+ ..+|+.+|.+|.++++++.|+-.|++|++
T Consensus 460 LlGhE~~~~ee~d~a~~~fr~Al~~~~rh----------------------YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~ 517 (638)
T KOG1126|consen 460 LLGHESIATEEFDKAMKSFRKALGVDPRH----------------------YNAWYGLGTVYLKQEKLEFAEFHFQKAVE 517 (638)
T ss_pred hcCChhhhhHHHHhHHHHHHhhhcCCchh----------------------hHHHHhhhhheeccchhhHHHHHHHhhhc
Confidence 99999999999999999999999998766 99999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHH
Q 035707 597 INPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWY 676 (713)
Q Consensus 597 ~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~ 676 (713)
++|.+......+|.++.+.|+.++|+..|++|+.++|.++-..+..|.++...++++ +|+..+++.-++.|++..+++
T Consensus 518 INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~--eal~~LEeLk~~vP~es~v~~ 595 (638)
T KOG1126|consen 518 INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYV--EALQELEELKELVPQESSVFA 595 (638)
T ss_pred CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchH--HHHHHHHHHHHhCcchHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998 999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHccccCC
Q 035707 677 NLGLLYKTYAGASALEAVECFEAAALLEESA 707 (713)
Q Consensus 677 ~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~ 707 (713)
.+|.+|.+.|+ .+.|+..|--|..++|.-
T Consensus 596 llgki~k~~~~--~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 596 LLGKIYKRLGN--TDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHHHHcc--chHHHHhhHHHhcCCCcc
Confidence 99999999999 999999999999999964
No 20
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.6e-24 Score=211.36 Aligned_cols=235 Identities=15% Similarity=0.121 Sum_probs=217.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHH
Q 035707 441 PYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAK 520 (713)
Q Consensus 441 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~ 520 (713)
..++...|..++-.|++-.|...|+.++.++|.+. ..+..++.+|....+..+-...|+++.+++| .++.+|+..|.
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp--~n~dvYyHRgQ 402 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDP--ENPDVYYHRGQ 402 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCC--CCCchhHhHHH
Confidence 56778888889999999999999999999999988 7899999999999999999999999999999 88999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Q 035707 521 LQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPY 600 (713)
Q Consensus 521 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 600 (713)
+++-.+++++|+.-|++++.++|++ ...+..++.+..++++++++...|+.++...|.
T Consensus 403 m~flL~q~e~A~aDF~Kai~L~pe~----------------------~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~ 460 (606)
T KOG0547|consen 403 MRFLLQQYEEAIADFQKAISLDPEN----------------------AYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN 460 (606)
T ss_pred HHHHHHHHHHHHHHHHHHhhcChhh----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999998766 889999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHH-hcCCChHHHHHHHHHHHhhCCCCHH
Q 035707 601 SASGWHSTGLLYEAKGLQQEALVSFRKALDAEPN------HVPSLVSIARVLRQ-IGGESMATIRCFLTDALRLDRTNTT 673 (713)
Q Consensus 601 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~------~~~~~~~la~~~~~-~g~~~l~~A~~~~~~al~~~p~~~~ 673 (713)
.++++...|.++..++++++|++.|.+++.+.|. ++..+..-|.+..+ .++++ .|+.++++|++++|....
T Consensus 461 ~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~--~a~~Ll~KA~e~Dpkce~ 538 (606)
T KOG0547|consen 461 CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDIN--QAENLLRKAIELDPKCEQ 538 (606)
T ss_pred CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHH--HHHHHHHHHHccCchHHH
Confidence 9999999999999999999999999999999998 66666666555443 35555 999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHccc
Q 035707 674 AWYNLGLLYKTYAGASALEAVECFEAAALLE 704 (713)
Q Consensus 674 ~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~ 704 (713)
++..||.+..++|+ .++|+++|+++..+.
T Consensus 539 A~~tlaq~~lQ~~~--i~eAielFEksa~lA 567 (606)
T KOG0547|consen 539 AYETLAQFELQRGK--IDEAIELFEKSAQLA 567 (606)
T ss_pred HHHHHHHHHHHHhh--HHHHHHHHHHHHHHH
Confidence 99999999999999 999999999998764
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.94 E-value=1.9e-23 Score=237.95 Aligned_cols=347 Identities=12% Similarity=-0.021 Sum_probs=228.7
Q ss_pred CCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHhcCCChHHHHHH
Q 035707 299 EWDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICAENKVCIEEGITY 378 (713)
Q Consensus 299 ~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~~A~~~ 378 (713)
|....++..++.++...|++..|...+++++. .+|+++.++..++.++...|++. +|+..
T Consensus 46 ~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~-------------------~~P~~~~a~~~la~~l~~~g~~~-eA~~~ 105 (765)
T PRK10049 46 QLPARGYAAVAVAYRNLKQWQNSLTLWQKALS-------------------LEPQNDDYQRGLILTLADAGQYD-EALVK 105 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------hCCCCHHHHHHHHHHHHHCCCHH-HHHHH
Confidence 34444455555555555555555555555544 24555555666666666666666 66666
Q ss_pred HHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 035707 379 ARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLD 458 (713)
Q Consensus 379 ~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~ 458 (713)
++++++ ..|.+. . +..+|.++ ...|++++|+..|++++ ...|+++.++..++.++...+..+
T Consensus 106 l~~~l~-~~P~~~----~-~~~la~~l-----------~~~g~~~~Al~~l~~al-~~~P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 106 AKQLVS-GAPDKA----N-LLALAYVY-----------KRAGRHWDELRAMTQAL-PRAPQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHH-hCCCCH----H-HHHHHHHH-----------HHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCCChH
Confidence 666665 455555 4 55556665 55555566666666666 666666666666666666666666
Q ss_pred HHHHHHHHHHhhhcCCch----HHHHHHHHHHH-----HcCCH---HHHHHHHHHHhhcc---CCCC--cHHHHHHHHHH
Q 035707 459 VALYYAKKLLNLEARSNV----KGYLLLARVLS-----AQKQF---ADAESVINDSLDQT---GKWD--QGELLRTKAKL 521 (713)
Q Consensus 459 ~A~~~~~~~l~~~p~~~~----~~~~~la~~~~-----~~g~~---~~A~~~~~~al~~~---p~~~--~~~~~~~la~~ 521 (713)
+|+..++++.. .|+... .....+..+.. ..+++ ++|+..++.+++.. |... ...+.......
T Consensus 168 ~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 168 PALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 66665555443 322100 01111111111 11223 55666666666442 2100 11111111223
Q ss_pred HHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Q 035707 522 QIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYS 601 (713)
Q Consensus 522 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 601 (713)
+...|++++|+..|+++++..+. .|.....+ +|.+|...|++++|+.+|++++..+|.+
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~-------------------~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~ 305 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQI-------------------IPPWAQRW--VASAYLKLHQPEKAQSILTELFYHPETI 305 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCC-------------------CCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCC
Confidence 34567777777777776665321 13334444 6889999999999999999999988766
Q ss_pred ----hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---------------CHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 035707 602 ----ASGWHSTGLLYEAKGLQQEALVSFRKALDAEPN---------------HVPSLVSIARVLRQIGGESMATIRCFLT 662 (713)
Q Consensus 602 ----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~l~~A~~~~~ 662 (713)
......++.++...|++++|+..++++....|. ...++..++.++...|+++ +|+..++
T Consensus 306 ~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~--eA~~~l~ 383 (765)
T PRK10049 306 ADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLP--QAEMRAR 383 (765)
T ss_pred CCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHH--HHHHHHH
Confidence 346777888889999999999999999988763 2356788999999999997 9999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCCCC
Q 035707 663 DALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALLEESAPV 709 (713)
Q Consensus 663 ~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~~~ 709 (713)
+++...|+++.++..+|.++...|+ +++|+..+++++.++|+++.
T Consensus 384 ~al~~~P~n~~l~~~lA~l~~~~g~--~~~A~~~l~~al~l~Pd~~~ 428 (765)
T PRK10049 384 ELAYNAPGNQGLRIDYASVLQARGW--PRAAENELKKAEVLEPRNIN 428 (765)
T ss_pred HHHHhCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhhCCCChH
Confidence 9999999999999999999999999 99999999999999999864
No 22
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.94 E-value=2.8e-23 Score=236.04 Aligned_cols=457 Identities=9% Similarity=-0.040 Sum_probs=347.9
Q ss_pred ccCCCCChHHHhhhhhhhccCC----HHHHHHHhhhHhhhcCCHHHHHhhhhcCCccccchhhhhhhhhhccccccCCCC
Q 035707 61 AKVDNSNIEEAESSLRESGYLN----YEEARALLGRLEFQKGNIEAALHVFEGIDVAAVTSRMKVSLSRRCDQNRRRSQS 136 (713)
Q Consensus 61 ~~~~~~~~~~A~~~l~~~l~~~----~~~a~~llg~~~~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (713)
.+...|++++|...|+...... ...++..+-..+...|+++.|.+++..+....+.+.
T Consensus 96 ~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~------------------ 157 (697)
T PLN03081 96 KLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPD------------------ 157 (697)
T ss_pred HHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcc------------------
Confidence 3455666777766666554211 334444455555666677666666654422111111
Q ss_pred CCCCCcchhHHHHHHHHHHHhhhhhhccCchHHHHHHHHHHHHHHHHhcCCCCCCCCCcccchHHHHHHHHHHhHHHHHh
Q 035707 137 DAAPPMSMHAVSLLVEAIFLKTKSLQGLGRFEEACQSCKVILDTVEHALPEGLPGNHSIDCKLQETLNKAVELLPELYKL 216 (713)
Q Consensus 137 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~ 216 (713)
. ..+.....+|.+.|++++|.+.|+.+.+ |+. ..+..+...|.+
T Consensus 158 -------~-------~~~n~Li~~y~k~g~~~~A~~lf~~m~~----------~~~------------~t~n~li~~~~~ 201 (697)
T PLN03081 158 -------Q-------YMMNRVLLMHVKCGMLIDARRLFDEMPE----------RNL------------ASWGTIIGGLVD 201 (697)
T ss_pred -------h-------HHHHHHHHHHhcCCCHHHHHHHHhcCCC----------CCe------------eeHHHHHHHHHH
Confidence 1 1233335667889999999988876532 221 134567788999
Q ss_pred cCChhHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHhhcCCCCCCCcccccccccccCCchhHHHHHHHHHHHHHHHhh
Q 035707 217 AGDPDETILSYRRALLYYWNLDIETTARIEKKFAVFLLYSGTDASPPNLRLQMELSFVPRNNIEEAVLLLLILLKKIVLG 296 (713)
Q Consensus 217 ~g~~~eA~~~~~~al~~~~~~~~~~~~~i~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~eeA~~ll~~~~~~~~l~ 296 (713)
.|++++|+..|++|+..+..++..++..+.+.++ ..+..+++..++.. ....
T Consensus 202 ~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~------------------------~~~~~~~~~~l~~~----~~~~ 253 (697)
T PLN03081 202 AGNYREAFALFREMWEDGSDAEPRTFVVMLRASA------------------------GLGSARAGQQLHCC----VLKT 253 (697)
T ss_pred CcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHh------------------------cCCcHHHHHHHHHH----HHHh
Confidence 9999999999999999888888777654432221 12334444444322 2223
Q ss_pred cCCCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHhcCCChHHHH
Q 035707 297 KIEWDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICAENKVCIEEGI 376 (713)
Q Consensus 297 ~~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~~A~ 376 (713)
....+..+++.|..+|.++|+++.|.+.|+++. +.+..+|..+...|.+.|+.+ +|+
T Consensus 254 g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----------------------~~~~vt~n~li~~y~~~g~~~-eA~ 310 (697)
T PLN03081 254 GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----------------------EKTTVAWNSMLAGYALHGYSE-EAL 310 (697)
T ss_pred CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----------------------CCChhHHHHHHHHHHhCCCHH-HHH
Confidence 455688899999999999999999999999863 346677888888899999999 999
Q ss_pred HHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcC
Q 035707 377 TYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMR-ERDPYIIYHLCLENAEQR 455 (713)
Q Consensus 377 ~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-p~~~~~~~~la~~~~~~g 455 (713)
.+|++.....-..+. .++..+...+ .+.|.+++|.+.+..++ +.. +.+..++..+...|.+.|
T Consensus 311 ~lf~~M~~~g~~pd~----~t~~~ll~a~-----------~~~g~~~~a~~i~~~m~-~~g~~~d~~~~~~Li~~y~k~G 374 (697)
T PLN03081 311 CLYYEMRDSGVSIDQ----FTFSIMIRIF-----------SRLALLEHAKQAHAGLI-RTGFPLDIVANTALVDLYSKWG 374 (697)
T ss_pred HHHHHHHHcCCCCCH----HHHHHHHHHH-----------HhccchHHHHHHHHHHH-HhCCCCCeeehHHHHHHHHHCC
Confidence 999998774334445 7788888888 67888899999999999 654 667888999999999999
Q ss_pred CHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHH
Q 035707 456 KLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETY 535 (713)
Q Consensus 456 ~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~ 535 (713)
++++|.+.|+++.+ | +. .+|..+...|.+.|+.++|+++|+++.+....| +...+..+...+...|..++|.++|
T Consensus 375 ~~~~A~~vf~~m~~--~-d~-~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f 449 (697)
T PLN03081 375 RMEDARNVFDRMPR--K-NL-ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEIF 449 (697)
T ss_pred CHHHHHHHHHhCCC--C-Ce-eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 99999999998754 3 44 789999999999999999999999998876543 6777888999999999999999999
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHc
Q 035707 536 VNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAK 615 (713)
Q Consensus 536 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 615 (713)
+.+.+..+- ..+...|..+...|.+.|++++|.+.++++ ...| +..+|..+...+...
T Consensus 450 ~~m~~~~g~--------------------~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~ 507 (697)
T PLN03081 450 QSMSENHRI--------------------KPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIH 507 (697)
T ss_pred HHHHHhcCC--------------------CCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHc
Confidence 998864321 223567889999999999999999999875 2344 567899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 035707 616 GLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRL 667 (713)
Q Consensus 616 g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~ 667 (713)
|+.+.|...+++++.+.|++...+..+..+|.+.|+++ +|.+.++...+.
T Consensus 508 g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~--~A~~v~~~m~~~ 557 (697)
T PLN03081 508 KNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQA--EAAKVVETLKRK 557 (697)
T ss_pred CCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHH--HHHHHHHHHHHc
Confidence 99999999999999999999999999999999999997 999999877654
No 23
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=4.5e-23 Score=202.72 Aligned_cols=427 Identities=15% Similarity=0.106 Sum_probs=300.8
Q ss_pred HHHHHhhhhhhccCchHHHHHHHHHHHHHHHHhcCCCCCCCCCcccchHHHHHHHHHHhHHHHHhcCChhHHHHHHHHHh
Q 035707 152 EAIFLKTKSLQGLGRFEEACQSCKVILDTVEHALPEGLPGNHSIDCKLQETLNKAVELLPELYKLAGDPDETILSYRRAL 231 (713)
Q Consensus 152 e~~~~~~~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~~~~al 231 (713)
.++-.+|.-+++.|+|++|++.|..+++.. |+. ++ -+...+.+|...|++++.++.--++|
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~--------p~e--------pi---FYsNraAcY~~lgd~~~Vied~TkAL 176 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIELC--------PDE--------PI---FYSNRAACYESLGDWEKVIEDCTKAL 176 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhcC--------CCC--------ch---hhhhHHHHHHHHhhHHHHHHHHHHHh
Confidence 455667999999999999999999998843 210 11 13456788999999999999999999
Q ss_pred cccCCCChhHHHHHHHHHHHHHhhcCCCCCCCcccccccccccCCchhHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHH
Q 035707 232 LYYWNLDIETTARIEKKFAVFLLYSGTDASPPNLRLQMELSFVPRNNIEEAVLLLLILLKKIVLGKIEWDPSIIDHLSFA 311 (713)
Q Consensus 232 ~~~~~~~~~~~~~i~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~eeA~~ll~~~~~~~~l~~~~~~~~~~~~l~~a 311 (713)
+.+|. . +..+++... .+...|++.||+.=+..+ ..++... +..+.-.+-..
T Consensus 177 El~P~----Y--------~KAl~RRA~-------------A~E~lg~~~eal~D~tv~---ci~~~F~-n~s~~~~~eR~ 227 (606)
T KOG0547|consen 177 ELNPD----Y--------VKALLRRAS-------------AHEQLGKFDEALFDVTVL---CILEGFQ-NASIEPMAERV 227 (606)
T ss_pred hcCcH----H--------HHHHHHHHH-------------HHHhhccHHHHHHhhhHH---HHhhhcc-cchhHHHHHHH
Confidence 87433 1 111122111 011223334443211100 0000000 00000000000
Q ss_pred HHhcCcHHHHHHHHHhhCCC-CCCchhhHHHHHHHhhcc---------cCCCC-hHHHHHHHHHHHhcC---CChHHHHH
Q 035707 312 LSVSGELWTLAHQVEELLPG-VMGNKKRYCTLALCYLGE---------ENSDC-NLELLVASKICAENK---VCIEEGIT 377 (713)
Q Consensus 312 ~~~~g~~~~a~~~~e~~l~~-~~~~~~~~~~la~~~~~~---------~~p~~-~~~~~~~a~~~~~~g---~~~~~A~~ 377 (713)
+-. .+..-.++-++. ..+... -.+....|.+. .++.+ ..+.+.-+.-.+..+ .|. .|..
T Consensus 228 Lkk-----~a~~ka~e~~k~nr~p~lP-S~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~-~a~~ 300 (606)
T KOG0547|consen 228 LKK-----QAMKKAKEKLKENRPPVLP-SATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYL-KAYD 300 (606)
T ss_pred HHH-----HHHHHHHHhhcccCCCCCC-cHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHH-HHHH
Confidence 111 111112222221 111111 11122222222 22222 223333332333333 566 7777
Q ss_pred HHHHHHHhhh---ccC---c--chHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 035707 378 YARKALSMLQ---GKC---R--QMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCL 449 (713)
Q Consensus 378 ~~~~al~~~~---~~~---~--~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~ 449 (713)
.+.+...... ..+ . ...+.++.+.|..+ .-.|+.-.|...|+.++ .++|.+...+..++.
T Consensus 301 ~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~-----------fL~g~~~~a~~d~~~~I-~l~~~~~~lyI~~a~ 368 (606)
T KOG0547|consen 301 KATEECLGSESSLSVNEIDAELEYMAEALLLRGTFH-----------FLKGDSLGAQEDFDAAI-KLDPAFNSLYIKRAA 368 (606)
T ss_pred HHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhh-----------hhcCCchhhhhhHHHHH-hcCcccchHHHHHHH
Confidence 7766654211 011 0 22367888888888 67888899999999999 999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHH
Q 035707 450 ENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLK 529 (713)
Q Consensus 450 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~ 529 (713)
+|....+..+-...|.++..++|.++ ++|+..|.+++-++++++|+.-|++++.++| ++...+..++.+..++++++
T Consensus 369 ~y~d~~~~~~~~~~F~~A~~ldp~n~-dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p--e~~~~~iQl~~a~Yr~~k~~ 445 (606)
T KOG0547|consen 369 AYADENQSEKMWKDFNKAEDLDPENP-DVYYHRGQMRFLLQQYEEAIADFQKAISLDP--ENAYAYIQLCCALYRQHKIA 445 (606)
T ss_pred HHhhhhccHHHHHHHHHHHhcCCCCC-chhHhHHHHHHHHHHHHHHHHHHHHHhhcCh--hhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 9999999999999999999999999999999 88999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------Chh
Q 035707 530 NAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPY------SAS 603 (713)
Q Consensus 530 ~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~ 603 (713)
++...|+.+....|+. ++++...|.++..+++|++|++.|++++.+.|. ++.
T Consensus 446 ~~m~~Fee~kkkFP~~----------------------~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~ 503 (606)
T KOG0547|consen 446 ESMKTFEEAKKKFPNC----------------------PEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAA 503 (606)
T ss_pred HHHHHHHHHHHhCCCC----------------------chHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccch
Confidence 9999999999997665 899999999999999999999999999999998 555
Q ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCH
Q 035707 604 GWHSTGLLYE-AKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNT 672 (713)
Q Consensus 604 ~~~~lg~~~~-~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~ 672 (713)
.+...|.+.. -.+++.+|+.+++++++++|....++..||.+..++|+.+ +|+++|++++.+..+..
T Consensus 504 plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~--eAielFEksa~lArt~~ 571 (606)
T KOG0547|consen 504 PLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKID--EAIELFEKSAQLARTES 571 (606)
T ss_pred hhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHhHH
Confidence 5555554432 3589999999999999999999999999999999999998 99999999998765543
No 24
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.6e-24 Score=221.78 Aligned_cols=307 Identities=14% Similarity=0.083 Sum_probs=264.2
Q ss_pred HHHHHHHHHHHhcCc--HHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHhcCCChHHHHHHHH
Q 035707 303 SIIDHLSFALSVSGE--LWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICAENKVCIEEGITYAR 380 (713)
Q Consensus 303 ~~~~~l~~a~~~~g~--~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~ 380 (713)
+++..++..|....+ ..+|...|++ ++.. .++..-.+..+|+.|++.++|+ +|..+|+
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~k-lp~h------------------~~nt~wvl~q~GrayFEl~~Y~-~a~~~F~ 377 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEK-LPSH------------------HYNTGWVLSQLGRAYFELIEYD-QAERIFS 377 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHh------------------cCCchHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 455666666655554 4688899998 5442 3455567788999999999999 9999999
Q ss_pred HHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 035707 381 KALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVA 460 (713)
Q Consensus 381 ~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A 460 (713)
.+-+ ..|-.. ...-....++. ...+ +-++.++-+-+-..+|+.|+.|..+|.+|..+++++.|
T Consensus 378 ~~r~-~~p~rv----~~meiyST~LW-----------HLq~-~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~A 440 (638)
T KOG1126|consen 378 LVRR-IEPYRV----KGMEIYSTTLW-----------HLQD-EVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTA 440 (638)
T ss_pred HHHh-hccccc----cchhHHHHHHH-----------HHHh-hHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHH
Confidence 9988 666544 22222222221 1111 33455554433288999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 035707 461 LYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLA 540 (713)
Q Consensus 461 ~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 540 (713)
+++|+++++++|... .++.++|.=+.....++.|...|+.++..+| .+..+|+.+|.+|.++++++.|.-.|++++.
T Consensus 441 ik~f~RAiQldp~fa-YayTLlGhE~~~~ee~d~a~~~fr~Al~~~~--rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~ 517 (638)
T KOG1126|consen 441 IKCFKRAIQLDPRFA-YAYTLLGHESIATEEFDKAMKSFRKALGVDP--RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE 517 (638)
T ss_pred HHHHHHhhccCCccc-hhhhhcCChhhhhHHHHhHHHHHHhhhcCCc--hhhHHHHhhhhheeccchhhHHHHHHHhhhc
Confidence 999999999999998 9999999999999999999999999999999 7899999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHH
Q 035707 541 VLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQE 620 (713)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~e 620 (713)
++|.+ ..+...+|.++.+.|+.++|+..|++|+.++|.++-..+..|.++...+++++
T Consensus 518 INP~n----------------------svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~e 575 (638)
T KOG1126|consen 518 INPSN----------------------SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVE 575 (638)
T ss_pred CCccc----------------------hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHH
Confidence 98765 88889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHH
Q 035707 621 ALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTT 673 (713)
Q Consensus 621 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~ 673 (713)
|+..+++.-++.|+...++..+|.+|.+.|+.+ .|+..|.-|++++|.-..
T Consensus 576 al~~LEeLk~~vP~es~v~~llgki~k~~~~~~--~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 576 ALQELEELKELVPQESSVFALLGKIYKRLGNTD--LALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHHccch--HHHHhhHHHhcCCCccch
Confidence 999999999999999999999999999999998 999999999999997544
No 25
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.6e-22 Score=195.25 Aligned_cols=360 Identities=13% Similarity=0.054 Sum_probs=299.4
Q ss_pred CCCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcc--------cCC--CChHHHHHHHHHHHh
Q 035707 298 IEWDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGE--------ENS--DCNLELLVASKICAE 367 (713)
Q Consensus 298 ~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~--------~~p--~~~~~~~~~a~~~~~ 367 (713)
...|+..++..|.++-..|....|...|-.++...+-.-..|..+..+.... .-| .+...-..+++++..
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~e 239 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQE 239 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence 4458889999999999999999999999999887777778888888776554 123 344445556667766
Q ss_pred cCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 035707 368 NKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHL 447 (713)
Q Consensus 368 ~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~l 447 (713)
..... +++.-+...+...-|.+. ..-...|.+. ....++++|+..|+... +.+|-..+-+-..
T Consensus 240 l~q~~-e~~~k~e~l~~~gf~~~~----~i~~~~A~~~-----------y~~rDfD~a~s~Feei~-knDPYRl~dmdly 302 (559)
T KOG1155|consen 240 LHQHE-EALQKKERLSSVGFPNSM----YIKTQIAAAS-----------YNQRDFDQAESVFEEIR-KNDPYRLDDMDLY 302 (559)
T ss_pred HHHHH-HHHHHHHHHHhccCCccH----HHHHHHHHHH-----------hhhhhHHHHHHHHHHHH-hcCCCcchhHHHH
Confidence 66777 888888887774466666 6666677777 67888899999999999 8888776666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCC
Q 035707 448 CLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGR 527 (713)
Q Consensus 448 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~ 527 (713)
..+++-..+-.+-.-..+.+..++.-.+ ++...+|.-|...++.++|+.+|+++++++| ....+|..+|.-|....+
T Consensus 303 SN~LYv~~~~skLs~LA~~v~~idKyR~-ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp--~~~~aWTLmGHEyvEmKN 379 (559)
T KOG1155|consen 303 SNVLYVKNDKSKLSYLAQNVSNIDKYRP-ETCCIIANYYSLRSEHEKAVMYFKRALKLNP--KYLSAWTLMGHEYVEMKN 379 (559)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHhccCCc-cceeeehhHHHHHHhHHHHHHHHHHHHhcCc--chhHHHHHhhHHHHHhcc
Confidence 6666655554554455566667777667 8888899999999999999999999999999 678899999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHH
Q 035707 528 LKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHS 607 (713)
Q Consensus 528 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 607 (713)
...|++.|+++++++|.+ ..+|+.+|..|.-++.+.=|+-+|+++....|+++..|..
T Consensus 380 t~AAi~sYRrAvdi~p~D----------------------yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~a 437 (559)
T KOG1155|consen 380 THAAIESYRRAVDINPRD----------------------YRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVA 437 (559)
T ss_pred cHHHHHHHHHHHhcCchh----------------------HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHH
Confidence 999999999999997655 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHh-------hCCCCHHHHHHHHH
Q 035707 608 TGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALR-------LDRTNTTAWYNLGL 680 (713)
Q Consensus 608 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~-------~~p~~~~~~~~lg~ 680 (713)
+|.+|.+.++.++|+++|.+++........++..+|.+|.+.++.+ +|..+|++.++ .+|....+..-|+.
T Consensus 438 LG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~--eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~ 515 (559)
T KOG1155|consen 438 LGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLN--EAAQYYEKYVEVSELEGEIDDETIKARLFLAE 515 (559)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Confidence 9999999999999999999999998888899999999999999987 99999999988 34555567777999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHcc
Q 035707 681 LYKTYAGASALEAVECFEAAALL 703 (713)
Q Consensus 681 ~~~~~g~~~~~~A~~~~~~a~~l 703 (713)
-+.+.++ +++|..+...++.-
T Consensus 516 ~f~k~~~--~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 516 YFKKMKD--FDEASYYATLVLKG 536 (559)
T ss_pred HHHhhcc--hHHHHHHHHHHhcC
Confidence 9999999 99998877777654
No 26
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=3.9e-23 Score=219.73 Aligned_cols=302 Identities=16% Similarity=0.087 Sum_probs=260.5
Q ss_pred hHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHH
Q 035707 355 NLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEK 434 (713)
Q Consensus 355 ~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 434 (713)
....+..|..+...|+++ +|+..|+++++ .+|.+. .++..+|.++ ...|++++|+..+++++
T Consensus 35 ~~~~y~~g~~~~~~~~~~-~A~~~~~~al~-~~p~~~----~~~~~la~~~-----------~~~g~~~~A~~~~~~~l- 96 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPD-KAIDLFIEMLK-VDPETV----ELHLALGNLF-----------RRRGEVDRAIRIHQNLL- 96 (389)
T ss_pred ccHHHHHHHHHHhcCChH-HHHHHHHHHHh-cCcccH----HHHHHHHHHH-----------HHcCcHHHHHHHHHHHh-
Confidence 344566677888999999 99999999999 788887 8999999999 88899999999999998
Q ss_pred hhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCC
Q 035707 435 TMRERD----PYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWD 510 (713)
Q Consensus 435 ~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 510 (713)
...+.. ..++..+|.+|...|++++|+..|+++++..|.+. .++..++.++...|++++|+..++++++..|.+.
T Consensus 97 ~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 175 (389)
T PRK11788 97 SRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAE-GALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSL 175 (389)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchH-HHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcc
Confidence 654322 35688999999999999999999999999988877 8999999999999999999999999998876432
Q ss_pred c---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHH
Q 035707 511 Q---GELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDA 587 (713)
Q Consensus 511 ~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 587 (713)
. ...+..+|.++...|++++|+..|+++++..|.. ..++..+|.++...|++++|
T Consensus 176 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~~A 233 (389)
T PRK11788 176 RVEIAHFYCELAQQALARGDLDAARALLKKALAADPQC----------------------VRASILLGDLALAQGDYAAA 233 (389)
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC----------------------HHHHHHHHHHHHHCCCHHHH
Confidence 2 2356678999999999999999999999986643 77899999999999999999
Q ss_pred HHHHHHHHhcCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 035707 588 EVCLSKSKAINPYS-ASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALR 666 (713)
Q Consensus 588 ~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~ 666 (713)
+..+++++..+|.+ ..++..++.+|...|++++|+..++++++..|+... +..++.++.+.|+++ +|+..++++++
T Consensus 234 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~--~A~~~l~~~l~ 310 (389)
T PRK11788 234 IEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPE--AAQALLREQLR 310 (389)
T ss_pred HHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHH--HHHHHHHHHHH
Confidence 99999999998876 467889999999999999999999999999998754 488999999999997 99999999999
Q ss_pred hCCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHc
Q 035707 667 LDRTNTTAWYNLGLLYKT--YAGASALEAVECFEAAAL 702 (713)
Q Consensus 667 ~~p~~~~~~~~lg~~~~~--~g~~~~~~A~~~~~~a~~ 702 (713)
..|++......++..+.. .|+ .++|+..+++.++
T Consensus 311 ~~P~~~~~~~l~~~~~~~~~~g~--~~~a~~~~~~~~~ 346 (389)
T PRK11788 311 RHPSLRGFHRLLDYHLAEAEEGR--AKESLLLLRDLVG 346 (389)
T ss_pred hCcCHHHHHHHHHHhhhccCCcc--chhHHHHHHHHHH
Confidence 999987555444443322 558 8899888887775
No 27
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.6e-21 Score=187.60 Aligned_cols=445 Identities=13% Similarity=0.052 Sum_probs=310.7
Q ss_pred HHHhhhHhhhcCCHHHHHhhhhcCCcc-ccchhhhh-hhhhhccccccCCCCCCCCCcchhHHHHHHHHHHHhhhhhhcc
Q 035707 87 RALLGRLEFQKGNIEAALHVFEGIDVA-AVTSRMKV-SLSRRCDQNRRRSQSDAAPPMSMHAVSLLVEAIFLKTKSLQGL 164 (713)
Q Consensus 87 ~~llg~~~~~~g~~~~Al~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 164 (713)
-+++|..++....|+.|...++.+... ..+.++.. .++ ++.++ --..+.++..+
T Consensus 81 ~y~laks~fd~kEf~Raa~fL~~~~s~k~~FL~lysk~La--~~kk~----------------------~e~~~~~l~~~ 136 (559)
T KOG1155|consen 81 IYLLAKSYFDCKEFERAAFFLQNCKSKKSAFLRLYSKYLA--GEKKS----------------------EEEMAELLGRL 136 (559)
T ss_pred hhhhHhhhhhhHHHHHHHHHHHhcchHHHHHHHHHHHHHh--hhHHH----------------------HHHHHHhhccc
Confidence 458999999999999999999876320 00000000 000 00000 00012233334
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCCCCCCCcccchHHHHHHHHHHhHHHHHhcCChhHHHHHHHHHhcc-cCCCChhHHH
Q 035707 165 GRFEEACQSCKVILDTVEHALPEGLPGNHSIDCKLQETLNKAVELLPELYKLAGDPDETILSYRRALLY-YWNLDIETTA 243 (713)
Q Consensus 165 g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~~~~al~~-~~~~~~~~~~ 243 (713)
+++..-...|..+-.-+++..-.+..|.+ .+++.|.++.+.|..+.|+..|..++.. +|+...
T Consensus 137 ~~~~~~~~~l~~L~~~le~~~~~~~~D~f------------llYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~A---- 200 (559)
T KOG1155|consen 137 ESFSRINSELIELNKPLESKHCGGEKDEF------------LLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSA---- 200 (559)
T ss_pred hhhhhhhhHHHHHhhHHHHHHhcccchhH------------HHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHH----
Confidence 44444444444443333333322222222 4678899999999999999999999764 333211
Q ss_pred HHHHHHHHHHhhcCCCCCCCcccccccccccCCchhHHHHHHHHHHHHHHHhhcCCCcH--HHHHHHHHHHHhcCcHHHH
Q 035707 244 RIEKKFAVFLLYSGTDASPPNLRLQMELSFVPRNNIEEAVLLLLILLKKIVLGKIEWDP--SIIDHLSFALSVSGELWTL 321 (713)
Q Consensus 244 ~i~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~eeA~~ll~~~~~~~~l~~~~~~~--~~~~~l~~a~~~~g~~~~a 321 (713)
..-+-.... + ++.+ .......|.+. ..-.-++.++....+.+++
T Consensus 201 -------WleL~~lit--~----------------~e~~---------~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~ 246 (559)
T KOG1155|consen 201 -------WLELSELIT--D----------------IEIL---------SILVVGLPSDMHWMKKFFLKKAYQELHQHEEA 246 (559)
T ss_pred -------HHHHHHhhc--h----------------HHHH---------HHHHhcCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 100100000 0 0000 00111112111 1112344556666677777
Q ss_pred HHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHH
Q 035707 322 AHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLL 401 (713)
Q Consensus 322 ~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~l 401 (713)
.+-.+.....+ -|+..-.-...|.+.+.+.+++ +|+..|+.+.+ .+|-.. .-.-..
T Consensus 247 ~~k~e~l~~~g------------------f~~~~~i~~~~A~~~y~~rDfD-~a~s~Feei~k-nDPYRl----~dmdly 302 (559)
T KOG1155|consen 247 LQKKERLSSVG------------------FPNSMYIKTQIAAASYNQRDFD-QAESVFEEIRK-NDPYRL----DDMDLY 302 (559)
T ss_pred HHHHHHHHhcc------------------CCccHHHHHHHHHHHhhhhhHH-HHHHHHHHHHh-cCCCcc----hhHHHH
Confidence 77776665543 3566666677788889999999 99999999999 566544 333333
Q ss_pred HHHHhhcccccccHHHHHhcHHHHHHHH-HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHH
Q 035707 402 GVLLSSQSRSVVSDSKRILKQSQALVAL-ETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYL 480 (713)
Q Consensus 402 g~~~~~~~~~~~~~~~~~~~~~~A~~~~-~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 480 (713)
..++. -..+ ...+.++ +.+. .++.-.+++..-+|..|...++.++|+.+|+++++++|... .+|.
T Consensus 303 SN~LY-----------v~~~-~skLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~-~aWT 368 (559)
T KOG1155|consen 303 SNVLY-----------VKND-KSKLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYL-SAWT 368 (559)
T ss_pred hHHHH-----------HHhh-hHHHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchh-HHHH
Confidence 33331 1111 2233333 3344 67777788888999999999999999999999999999998 9999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcc
Q 035707 481 LLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQ 560 (713)
Q Consensus 481 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 560 (713)
.+|.-|..+++...|+..|++|++++| .+..+|+.+|+.|...+.+.=|+-+|++++...|.
T Consensus 369 LmGHEyvEmKNt~AAi~sYRrAvdi~p--~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn---------------- 430 (559)
T KOG1155|consen 369 LMGHEYVEMKNTHAAIESYRRAVDINP--RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN---------------- 430 (559)
T ss_pred HhhHHHHHhcccHHHHHHHHHHHhcCc--hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC----------------
Confidence 999999999999999999999999999 78999999999999999999999999999998654
Q ss_pred cCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh-------cCC
Q 035707 561 NHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALD-------AEP 633 (713)
Q Consensus 561 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~-------~~p 633 (713)
+...|..||.+|.+.++.++|+.||.+++.....+..++..+|.+|.+.++..+|..+|++.++ .+|
T Consensus 431 ------DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~ 504 (559)
T KOG1155|consen 431 ------DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDD 504 (559)
T ss_pred ------chHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccch
Confidence 4999999999999999999999999999999888889999999999999999999999999987 456
Q ss_pred CCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCC
Q 035707 634 NHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDR 669 (713)
Q Consensus 634 ~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p 669 (713)
+...+...|+.-+.+.++++ +|..+...++.-++
T Consensus 505 ~t~ka~~fLA~~f~k~~~~~--~As~Ya~~~~~~~~ 538 (559)
T KOG1155|consen 505 ETIKARLFLAEYFKKMKDFD--EASYYATLVLKGET 538 (559)
T ss_pred HHHHHHHHHHHHHHhhcchH--HHHHHHHHHhcCCc
Confidence 66777888999999999998 88888777766533
No 28
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=2.1e-22 Score=214.11 Aligned_cols=307 Identities=15% Similarity=0.037 Sum_probs=260.9
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHhcCCChHHHHHHHH
Q 035707 301 DPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICAENKVCIEEGITYAR 380 (713)
Q Consensus 301 ~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~ 380 (713)
.....+..+..+...|+++.|...|++++.. +|+++.++..+|.++...|++. +|+.+++
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~-------------------~p~~~~~~~~la~~~~~~g~~~-~A~~~~~ 93 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKV-------------------DPETVELHLALGNLFRRRGEVD-RAIRIHQ 93 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhc-------------------CcccHHHHHHHHHHHHHcCcHH-HHHHHHH
Confidence 3344556678888999999999999999874 6888889999999999999999 9999999
Q ss_pred HHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 035707 381 KALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVA 460 (713)
Q Consensus 381 ~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A 460 (713)
+++. .++........++..+|.+| ...|++++|+..|++++ ..+|.+..++..++.++...|++++|
T Consensus 94 ~~l~-~~~~~~~~~~~~~~~La~~~-----------~~~g~~~~A~~~~~~~l-~~~~~~~~~~~~la~~~~~~g~~~~A 160 (389)
T PRK11788 94 NLLS-RPDLTREQRLLALQELGQDY-----------LKAGLLDRAEELFLQLV-DEGDFAEGALQQLLEIYQQEKDWQKA 160 (389)
T ss_pred HHhc-CCCCCHHHHHHHHHHHHHHH-----------HHCCCHHHHHHHHHHHH-cCCcchHHHHHHHHHHHHHhchHHHH
Confidence 9988 43333323346788999999 78899999999999999 98999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCch----HHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHH
Q 035707 461 LYYAKKLLNLEARSNV----KGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYV 536 (713)
Q Consensus 461 ~~~~~~~l~~~p~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 536 (713)
+..++++++..|.+.. ..+..+|.++...|++++|+..|+++++..| ....++..+|.++...|++++|++.|+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~ 238 (389)
T PRK11788 161 IDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADP--QCVRASILLGDLALAQGDYAAAIEALE 238 (389)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc--CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999998876531 2566789999999999999999999999988 678899999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC
Q 035707 537 NLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKG 616 (713)
Q Consensus 537 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 616 (713)
+++...|.+ ...++..++.+|...|++++|+..++++++..|+.. .+..++.++...|
T Consensus 239 ~~~~~~p~~---------------------~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-~~~~la~~~~~~g 296 (389)
T PRK11788 239 RVEEQDPEY---------------------LSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGAD-LLLALAQLLEEQE 296 (389)
T ss_pred HHHHHChhh---------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch-HHHHHHHHHHHhC
Confidence 999886532 256788899999999999999999999999999765 4488999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--hcCCChHHHHHHHHHHHh
Q 035707 617 LQQEALVSFRKALDAEPNHVPSLVSIARVLRQ--IGGESMATIRCFLTDALR 666 (713)
Q Consensus 617 ~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~l~~A~~~~~~al~ 666 (713)
++++|+..++++++..|++......++..+.. .|+.+ +++..+++.++
T Consensus 297 ~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~--~a~~~~~~~~~ 346 (389)
T PRK11788 297 GPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAK--ESLLLLRDLVG 346 (389)
T ss_pred CHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccch--hHHHHHHHHHH
Confidence 99999999999999999987655444444322 34665 77777776664
No 29
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.7e-22 Score=200.23 Aligned_cols=491 Identities=16% Similarity=0.087 Sum_probs=353.4
Q ss_pred CcccccCCCCChHHHhhhhhhhccCC-HHHHHHHhhhHhhhcCCHHHHHhhhhcCCccccchhhhhhhhhhccccccCCC
Q 035707 57 GEMDAKVDNSNIEEAESSLRESGYLN-YEEARALLGRLEFQKGNIEAALHVFEGIDVAAVTSRMKVSLSRRCDQNRRRSQ 135 (713)
Q Consensus 57 ~~~~~~~~~~~~~~A~~~l~~~l~~~-~~~a~~llg~~~~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (713)
+-++.++.+..|.-|.---..+..+. .+.--+.+|+++|-.|+|+.|.+....-+.+.
T Consensus 21 ~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~--------------------- 79 (611)
T KOG1173|consen 21 RLVRDALMQHRYKTALFWADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLEK--------------------- 79 (611)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhh---------------------
Confidence 44456677777777776666655433 45555689999999999999988876432111
Q ss_pred CCCCCCcchhHHHHHHHHHHHhhhhhhccCchHHHHHHHHHH--H----HHHHHhcCCCC--CCCCCcccchHHHHHHHH
Q 035707 136 SDAAPPMSMHAVSLLVEAIFLKTKSLQGLGRFEEACQSCKVI--L----DTVEHALPEGL--PGNHSIDCKLQETLNKAV 207 (713)
Q Consensus 136 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~g~~~eA~~~~~~~--l----~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~ 207 (713)
.-..+.|+.++|+.++.++++|....... . ...++-- .+. ++..+++ --...-..-.
T Consensus 80 -------------~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~-~~~l~~n~~~~~-~~~~~essic 144 (611)
T KOG1173|consen 80 -------------RDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDA-ANTLELNSAGED-LMINLESSIC 144 (611)
T ss_pred -------------hhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhh-hceeccCccccc-ccccchhcee
Confidence 11246788899999999999998766622 0 0000000 000 0000100 0001111223
Q ss_pred HHhHHHHHhcCChhHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHhhcCCCCCCCccccccccc-cc-CCchhHHHHHH
Q 035707 208 ELLPELYKLAGDPDETILSYRRALLYYWNLDIETTARIEKKFAVFLLYSGTDASPPNLRLQMELS-FV-PRNNIEEAVLL 285 (713)
Q Consensus 208 ~~l~~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~i~~~~a~~ll~~~~~~~~~~~~~~~~~~-~~-~~~~~eeA~~l 285 (713)
.+-|.+|....+.++|...|.+|+.. |..++....+-....++....+ ...+.+. +. -.+..++-+..
T Consensus 145 ~lRgk~y~al~n~~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~~mlt~~Ee------~~ll~~l~~a~~~~ed~e~l~~ 214 (611)
T KOG1173|consen 145 YLRGKVYVALDNREEARDKYKEALLA----DAKCFEAFEKLVSAHMLTAQEE------FELLESLDLAMLTKEDVERLEI 214 (611)
T ss_pred eeeeehhhhhccHHHHHHHHHHHHhc----chhhHHHHHHHHHHHhcchhHH------HHHHhcccHHhhhhhHHHHHHH
Confidence 45677899999999999999999986 4444433321111111111000 0000000 00 00111111111
Q ss_pred HHHH-------------HHHHHhhcCCCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCC
Q 035707 286 LLIL-------------LKKIVLGKIEWDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENS 352 (713)
Q Consensus 286 l~~~-------------~~~~~l~~~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p 352 (713)
+..+ ..+..+-...+++.++...+.-+...+++.+-.+.+++++.. +|
T Consensus 215 lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-------------------dp 275 (611)
T KOG1173|consen 215 LYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEK-------------------DP 275 (611)
T ss_pred HHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-------------------CC
Confidence 1100 001122233457777788888899999999999999998875 45
Q ss_pred CChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHH
Q 035707 353 DCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETA 432 (713)
Q Consensus 353 ~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 432 (713)
-+...+...--.+.+.|+.. +=..+-.+.++ ..|..+ ..|+.+|..| ...|.+.+|.++|.++
T Consensus 276 fh~~~~~~~ia~l~el~~~n-~Lf~lsh~LV~-~yP~~a----~sW~aVg~YY-----------l~i~k~seARry~SKa 338 (611)
T KOG1173|consen 276 FHLPCLPLHIACLYELGKSN-KLFLLSHKLVD-LYPSKA----LSWFAVGCYY-----------LMIGKYSEARRYFSKA 338 (611)
T ss_pred CCcchHHHHHHHHHHhcccc-hHHHHHHHHHH-hCCCCC----cchhhHHHHH-----------HHhcCcHHHHHHHHHH
Confidence 55544444333677888877 77777777888 789988 9999999999 7889999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcH
Q 035707 433 EKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQG 512 (713)
Q Consensus 433 l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 512 (713)
. .++|....+|...|..+.-.|..++|+.+|..+-++.|+.. .-...+|.-|..++++.-|...|.+|+.+.| .++
T Consensus 339 t-~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P--~Dp 414 (611)
T KOG1173|consen 339 T-TLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLYLGMEYMRTNNLKLAEKFFKQALAIAP--SDP 414 (611)
T ss_pred h-hcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHHHHHHHHHhccHHHHHHHHHHHHhcCC--Ccc
Confidence 9 99999999999999999999999999999999999999988 7788899999999999999999999999999 889
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 035707 513 ELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLS 592 (713)
Q Consensus 513 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 592 (713)
.++..+|.+....+.|.+|..+|+.++...+.. ....+.-...+.+||.++.+++++++|+.+|+
T Consensus 415 lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~---------------~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 415 LVLHELGVVAYTYEEYPEALKYFQKALEVIKSV---------------LNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhc---------------cccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 999999999999999999999999999665432 22223346679999999999999999999999
Q ss_pred HHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 035707 593 KSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQ 648 (713)
Q Consensus 593 ~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 648 (713)
+++.+.|.++.++..+|.+|..+|+++.|+..|.+++.+.|++..+-..|+.+...
T Consensus 480 ~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 480 KALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999997766666655443
No 30
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.92 E-value=1e-21 Score=223.21 Aligned_cols=431 Identities=13% Similarity=0.002 Sum_probs=339.6
Q ss_pred hHHHHHhcCChhHHHHHHHHHhccc-CCCChhHHHHHH------------HHHHHHHhhcCCCCCCCcccccccccccCC
Q 035707 210 LPELYKLAGDPDETILSYRRALLYY-WNLDIETTARIE------------KKFAVFLLYSGTDASPPNLRLQMELSFVPR 276 (713)
Q Consensus 210 l~~~~~~~g~~~eA~~~~~~al~~~-~~~~~~~~~~i~------------~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~ 276 (713)
+...|.+.|++++|+..|+.+...+ ..++..++..+. .++...+...|... .+.+...+...|...
T Consensus 93 ~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~k~ 171 (697)
T PLN03081 93 QIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMHVKC 171 (697)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHhcC
Confidence 3455788999999999999998754 457777776652 23333444445432 223345667789999
Q ss_pred chhHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCC-CchhhHHHHHHHhhcc------
Q 035707 277 NNIEEAVLLLLILLKKIVLGKIEWDPSIIDHLSFALSVSGELWTLAHQVEELLPGVM-GNKKRYCTLALCYLGE------ 349 (713)
Q Consensus 277 ~~~eeA~~ll~~~~~~~~l~~~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~-~~~~~~~~la~~~~~~------ 349 (713)
|.+++|..+|..+ ...+...++.+..+|.+.|++++|.+.|+++..... ++...+..+...+...
T Consensus 172 g~~~~A~~lf~~m--------~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 172 GMLIDARRLFDEM--------PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred CCHHHHHHHHhcC--------CCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 9999998877322 124778899999999999999999999999865433 2333343333333222
Q ss_pred ----------cCCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHH
Q 035707 350 ----------ENSDCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRI 419 (713)
Q Consensus 350 ----------~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~ 419 (713)
.-..+...+..+...|.+.|+.+ +|...|++. .+.+. .+|..+...| .+.
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~-~A~~vf~~m----~~~~~----vt~n~li~~y-----------~~~ 303 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIE-DARCVFDGM----PEKTT----VAWNSMLAGY-----------ALH 303 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHH-HHHHHHHhC----CCCCh----hHHHHHHHHH-----------HhC
Confidence 12235556667778899999999 999998864 34456 8899999999 788
Q ss_pred hcHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh-cCCchHHHHHHHHHHHHcCCHHHHHH
Q 035707 420 LKQSQALVALETAEKTMR-ERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLE-ARSNVKGYLLLARVLSAQKQFADAES 497 (713)
Q Consensus 420 ~~~~~A~~~~~~al~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~la~~~~~~g~~~~A~~ 497 (713)
|+.++|+.+|+++. ... ..+..++..+...+.+.|++++|.+.+..+++.. +.+. .++..+...|.+.|++++|..
T Consensus 304 g~~~eA~~lf~~M~-~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~-~~~~~Li~~y~k~G~~~~A~~ 381 (697)
T PLN03081 304 GYSEEALCLYYEMR-DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI-VANTALVDLYSKWGRMEDARN 381 (697)
T ss_pred CCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCe-eehHHHHHHHHHCCCHHHHHH
Confidence 88899999999987 543 3466789999999999999999999999999876 3344 788999999999999999999
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHH
Q 035707 498 VINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANV 577 (713)
Q Consensus 498 ~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 577 (713)
+|+++.+ .+...|..++..|...|+.++|++.|+++..... ..+..++..+...
T Consensus 382 vf~~m~~-----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~---------------------~Pd~~T~~~ll~a 435 (697)
T PLN03081 382 VFDRMPR-----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGV---------------------APNHVTFLAVLSA 435 (697)
T ss_pred HHHhCCC-----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------------CCCHHHHHHHHHH
Confidence 9998754 2456799999999999999999999999887521 2336778889999
Q ss_pred HHHCCCHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChH
Q 035707 578 YTSLSQWRDAEVCLSKSKAINPY--SASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMA 655 (713)
Q Consensus 578 ~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~ 655 (713)
+...|+.++|..+|+.+.+..+- +...|..+..++.+.|++++|.+.++++ ...| +..+|..+...+...|+.+
T Consensus 436 ~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~-- 511 (697)
T PLN03081 436 CRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLE-- 511 (697)
T ss_pred HhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcH--
Confidence 99999999999999999864322 4567889999999999999999999874 2334 4677999999999999998
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcc
Q 035707 656 TIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALL 703 (713)
Q Consensus 656 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l 703 (713)
.|...+++.+++.|++...|..++.+|...|+ +++|.+.++...+.
T Consensus 512 ~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~--~~~A~~v~~~m~~~ 557 (697)
T PLN03081 512 LGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGR--QAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHhCCCCCCCcchHHHHHHHHhCCC--HHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999 99999999988764
No 31
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.92 E-value=1.1e-20 Score=210.71 Aligned_cols=104 Identities=8% Similarity=0.012 Sum_probs=70.3
Q ss_pred CCHHHHHHHhhhHhhhcCCHHHHHhhhhcCCccccchhhhhhhhhhccccccCCCCCCCCCcchhHHHHHHHHHHHhhhh
Q 035707 81 LNYEEARALLGRLEFQKGNIEAALHVFEGIDVAAVTSRMKVSLSRRCDQNRRRSQSDAAPPMSMHAVSLLVEAIFLKTKS 160 (713)
Q Consensus 81 ~~~~~a~~llg~~~~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 160 (713)
++.++..+..+.+.+++|+++.|+..|+++. +..| .++. +.+-....
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL------~~~P----------------------~~~~-----av~dll~l 77 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEES------KAGP----------------------LQSG-----QVDDWLQI 77 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHH------hhCc----------------------cchh-----hHHHHHHH
Confidence 4456688899999999999999999999762 1111 0000 00012233
Q ss_pred hhccCchHHHHHHHHHHHHHHHHhcCCCCCCCCCcccchHHHHHHHHHHhHHHHHhcCChhHHHHHHHHHhcccCC
Q 035707 161 LQGLGRFEEACQSCKVILDTVEHALPEGLPGNHSIDCKLQETLNKAVELLPELYKLAGDPDETILSYRRALLYYWN 236 (713)
Q Consensus 161 ~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~~~~al~~~~~ 236 (713)
+...|+.++|...|+++++ |.+.+ ..++..++.++...|++++|+..|++++...|+
T Consensus 78 ~~~~G~~~~A~~~~eka~~------p~n~~-------------~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~ 134 (822)
T PRK14574 78 AGWAGRDQEVIDVYERYQS------SMNIS-------------SRGLASAARAYRNEKRWDQALALWQSSLKKDPT 134 (822)
T ss_pred HHHcCCcHHHHHHHHHhcc------CCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4456999999999988773 11111 123344577999999999999999999987544
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.91 E-value=7.1e-22 Score=191.99 Aligned_cols=450 Identities=16% Similarity=0.060 Sum_probs=322.4
Q ss_pred hhhhhhccCchHHHHHHHHHHHHHHHHhcCCCCCCCCCcccchHHHHHHHHHHhHHHHHhcCChhHHHHHHHHHhcccCC
Q 035707 157 KTKSLQGLGRFEEACQSCKVILDTVEHALPEGLPGNHSIDCKLQETLNKAVELLPELYKLAGDPDETILSYRRALLYYWN 236 (713)
Q Consensus 157 ~~~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~~~~al~~~~~ 236 (713)
.|..+++...|.+|++.|+.+|+.|+++. - .+-.+.+..+|.-+.+.|+|++||..|...+...||
T Consensus 243 igni~~kkr~fskaikfyrmaldqvpsin--------k------~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn 308 (840)
T KOG2003|consen 243 IGNIHFKKREFSKAIKFYRMALDQVPSIN--------K------DMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPN 308 (840)
T ss_pred ecceeeehhhHHHHHHHHHHHHhhccccc--------h------hhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCcc
Confidence 37888899999999999999999775432 1 223456777888899999999999999999998776
Q ss_pred CChhHHHHH-----------HHHHHHHHhhcCCCCCCCccccccccccc-CCc-----hhHHHHHHHHHHHHHHHhhcCC
Q 035707 237 LDIETTARI-----------EKKFAVFLLYSGTDASPPNLRLQMELSFV-PRN-----NIEEAVLLLLILLKKIVLGKIE 299 (713)
Q Consensus 237 ~~~~~~~~i-----------~~~~a~~ll~~~~~~~~~~~~~~~~~~~~-~~~-----~~eeA~~ll~~~~~~~~l~~~~ 299 (713)
+-....-.| .+.+. -++.-..+ + -+.-|+ +.. -+.+|+.-=+ ++++- ...+
T Consensus 309 ~~a~~nl~i~~f~i~d~ekmkeaf~-kli~ip~~--~------dddkyi~~~ddp~~~ll~eai~nd~--lk~~e-k~~k 376 (840)
T KOG2003|consen 309 FIAALNLIICAFAIGDAEKMKEAFQ-KLIDIPGE--I------DDDKYIKEKDDPDDNLLNEAIKNDH--LKNME-KENK 376 (840)
T ss_pred HHhhhhhhhhheecCcHHHHHHHHH-HHhcCCCC--C------CcccccCCcCCcchHHHHHHHhhHH--HHHHH-Hhhh
Confidence 332211011 11111 11111000 0 001111 111 1122221100 00000 0000
Q ss_pred CcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHhcCCChHHHHHHH
Q 035707 300 WDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICAENKVCIEEGITYA 379 (713)
Q Consensus 300 ~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~ 379 (713)
.+.+ .-...+.+.+..++...+.-.-.|..-.+-... --|--...-...+..+.++|++. .|++++
T Consensus 377 a~ae------------k~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~-~~~la~dlei~ka~~~lk~~d~~-~aieil 442 (840)
T KOG2003|consen 377 ADAE------------KAIITAAKIIAPVIAPDFAAGCDWCLESLKASQ-HAELAIDLEINKAGELLKNGDIE-GAIEIL 442 (840)
T ss_pred hhHH------------HHHHHHHHHhccccccchhcccHHHHHHHHHhh-hhhhhhhhhhhHHHHHHhccCHH-HHHHHH
Confidence 0000 001112222222332222222223221111000 11222334455667889999999 999987
Q ss_pred HHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 035707 380 RKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDV 459 (713)
Q Consensus 380 ~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~ 459 (713)
+-.-+ .+.. ..+.+-..|...++.+| ..++..|..+-..++ .++.-++.++.+.|.+-+..|++++
T Consensus 443 kv~~~-kdnk---~~saaa~nl~~l~flqg---------gk~~~~aqqyad~al-n~dryn~~a~~nkgn~~f~ngd~dk 508 (840)
T KOG2003|consen 443 KVFEK-KDNK---TASAAANNLCALRFLQG---------GKDFADAQQYADIAL-NIDRYNAAALTNKGNIAFANGDLDK 508 (840)
T ss_pred HHHHh-ccch---hhHHHhhhhHHHHHHhc---------ccchhHHHHHHHHHh-cccccCHHHhhcCCceeeecCcHHH
Confidence 65443 2222 22345555555553221 346789999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 035707 460 ALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLL 539 (713)
Q Consensus 460 A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 539 (713)
|.+.|++++..+.... .+++.+|..+..+|++++|+.+|-+...+-- ++..+++.++.+|....++.+|++++.++.
T Consensus 509 a~~~ykeal~ndasc~-ealfniglt~e~~~~ldeald~f~klh~il~--nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 509 AAEFYKEALNNDASCT-EALFNIGLTAEALGNLDEALDCFLKLHAILL--NNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHcCchHHH-HHHHHhcccHHHhcCHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 9999999999888777 9999999999999999999999998877655 678999999999999999999999999998
Q ss_pred HHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHH
Q 035707 540 AVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQ 619 (713)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 619 (713)
.+.|++ +.++..||.+|-+.|+-.+|.+|+-......|.+.++.-.+|..|....-++
T Consensus 586 slip~d----------------------p~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~e 643 (840)
T KOG2003|consen 586 SLIPND----------------------PAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSE 643 (840)
T ss_pred ccCCCC----------------------HHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHH
Confidence 886654 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q 035707 620 EALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAG 687 (713)
Q Consensus 620 eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 687 (713)
+|+.+|+++.-+.|+.......++.++.+.|+|. +|...|+..-+..|.+.+++..|..+.-.+|-
T Consensus 644 kai~y~ekaaliqp~~~kwqlmiasc~rrsgnyq--ka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 644 KAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQ--KAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHH--HHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9999999999999998888888999999999998 99999999999999999999888888887776
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.91 E-value=6.9e-20 Score=186.04 Aligned_cols=378 Identities=14% Similarity=0.094 Sum_probs=251.0
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCC-----CCCCchhhHHHHHHHhhcc---
Q 035707 278 NIEEAVLLLLILLKKIVLGKIEWDPSIIDHLSFALSVSGELWTLAHQVEELLP-----GVMGNKKRYCTLALCYLGE--- 349 (713)
Q Consensus 278 ~~eeA~~ll~~~~~~~~l~~~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~-----~~~~~~~~~~~la~~~~~~--- 349 (713)
.|+.|...| +.+-..+|.++.++..-+..--..|+.+...+.+.+.+. +..-+...|..-|.....+
T Consensus 421 tYenAkkvL-----NkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv 495 (913)
T KOG0495|consen 421 TYENAKKVL-----NKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSV 495 (913)
T ss_pred HHHHHHHHH-----HHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCCh
Confidence 345555443 555677899999998888888888998888888877643 3334455566655443332
Q ss_pred ---------------cCCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhccccccc
Q 035707 350 ---------------ENSDCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVS 414 (713)
Q Consensus 350 ---------------~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~ 414 (713)
+..+.-..|+.-+..|...+.+. -|+..|..+++ ..|... ..|......-
T Consensus 496 ~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~-carAVya~alq-vfp~k~----slWlra~~~e--------- 560 (913)
T KOG0495|consen 496 ITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIE-CARAVYAHALQ-VFPCKK----SLWLRAAMFE--------- 560 (913)
T ss_pred hhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHH-HHHHHHHHHHh-hccchh----HHHHHHHHHH---------
Confidence 45556778888888888888888 88888988888 677765 5555444443
Q ss_pred HHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHH
Q 035707 415 DSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFAD 494 (713)
Q Consensus 415 ~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~ 494 (713)
..-|..++-..+|++++ ...|.....|...+..+...|+...|...+.++++.+|++. +.|+.-..+.....+++.
T Consensus 561 --k~hgt~Esl~Allqkav-~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnse-eiwlaavKle~en~e~er 636 (913)
T KOG0495|consen 561 --KSHGTRESLEALLQKAV-EQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSE-EIWLAAVKLEFENDELER 636 (913)
T ss_pred --HhcCcHHHHHHHHHHHH-HhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcH-HHHHHHHHHhhccccHHH
Confidence 33455566677777777 77777777777777777777888888888888877777766 777777777777777777
Q ss_pred HHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHH
Q 035707 495 AESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDL 574 (713)
Q Consensus 495 A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 574 (713)
|...|.++....| ...+|..-+.+...+++.++|+.+++.+++..|.. ...|..+
T Consensus 637 aR~llakar~~sg---TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f----------------------~Kl~lml 691 (913)
T KOG0495|consen 637 ARDLLAKARSISG---TERVWMKSANLERYLDNVEEALRLLEEALKSFPDF----------------------HKLWLML 691 (913)
T ss_pred HHHHHHHHhccCC---cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCch----------------------HHHHHHH
Confidence 7777777777665 45667777777777777777777777777776544 5555555
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCCh
Q 035707 575 ANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESM 654 (713)
Q Consensus 575 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l 654 (713)
|.++.++++.+.|...|...++..|..+..|..++.+-...|+.-.|...++++.-.+|+++..|.....+-.+.|..+
T Consensus 692 GQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~- 770 (913)
T KOG0495|consen 692 GQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKE- 770 (913)
T ss_pred hHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHH-
Confidence 5555555555555555555555555555555555555555555555555555555555555555555555555555554
Q ss_pred HHHHHHHHHHHhhCCCC------------------------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccc
Q 035707 655 ATIRCFLTDALRLDRTN------------------------------TTAWYNLGLLYKTYAGASALEAVECFEAAALLE 704 (713)
Q Consensus 655 ~~A~~~~~~al~~~p~~------------------------------~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~ 704 (713)
.|.....+|++-.|++ +.++...|..++...+ +++|.++|++++..+
T Consensus 771 -~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k--~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 771 -QAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKK--IEKAREWFERAVKKD 847 (913)
T ss_pred -HHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHH--HHHHHHHHHHHHccC
Confidence 5555555444443332 3344455666666666 666666666666666
Q ss_pred cCCC
Q 035707 705 ESAP 708 (713)
Q Consensus 705 p~~~ 708 (713)
|++.
T Consensus 848 ~d~G 851 (913)
T KOG0495|consen 848 PDNG 851 (913)
T ss_pred Cccc
Confidence 6653
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.91 E-value=5.2e-20 Score=194.50 Aligned_cols=558 Identities=16% Similarity=0.084 Sum_probs=358.7
Q ss_pred CcccccCCCCChHHHhhhhhhhccCC--HHHHHHHhhhHhhhcCCHHHHHhhhhcCCccccchhhhhhhhhhccccccCC
Q 035707 57 GEMDAKVDNSNIEEAESSLRESGYLN--YEEARALLGRLEFQKGNIEAALHVFEGIDVAAVTSRMKVSLSRRCDQNRRRS 134 (713)
Q Consensus 57 ~~~~~~~~~~~~~~A~~~l~~~l~~~--~~~a~~llg~~~~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (713)
|+....+..|++++|+..+.|++..+ +.+|++.||.+|-++||.+.|+..+-.+ ..+.|+
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llA--AHL~p~---------------- 205 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLA--AHLNPK---------------- 205 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHH--HhcCCC----------------
Confidence 45556677899999999999999655 9999999999999999999998877533 111221
Q ss_pred CCCCCCCcchhHHHHHHHHHHHhhhhhhccCchHHHHHHHHHHHHHHHHhcCCCCCCCCCcccchHHHHHHHHHHhHHHH
Q 035707 135 QSDAAPPMSMHAVSLLVEAIFLKTKSLQGLGRFEEACQSCKVILDTVEHALPEGLPGNHSIDCKLQETLNKAVELLPELY 214 (713)
Q Consensus 135 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~ 214 (713)
.+ +.|...+.-..++|++++|.-.|.+++... |+++ +.+..-..+|
T Consensus 206 ---------d~------e~W~~ladls~~~~~i~qA~~cy~rAI~~~--------p~n~-----------~~~~ers~L~ 251 (895)
T KOG2076|consen 206 ---------DY------ELWKRLADLSEQLGNINQARYCYSRAIQAN--------PSNW-----------ELIYERSSLY 251 (895)
T ss_pred ---------Ch------HHHHHHHHHHHhcccHHHHHHHHHHHHhcC--------Ccch-----------HHHHHHHHHH
Confidence 01 557777888889999999999999988732 3322 2345567789
Q ss_pred HhcCChhHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHhhcCCCCCCCcccccccccccCCchhHHHHHHHHHHHHHHH
Q 035707 215 KLAGDPDETILSYRRALLYYWNLDIETTARIEKKFAVFLLYSGTDASPPNLRLQMELSFVPRNNIEEAVLLLLILLKKIV 294 (713)
Q Consensus 215 ~~~g~~~eA~~~~~~al~~~~~~~~~~~~~i~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~eeA~~ll~~~~~~~~ 294 (713)
.+.|+...|+..|.+++...|+.|-..+-...+..+...+ ..+.-+-|+..+...+.
T Consensus 252 ~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~--------------------~~~~~e~a~~~le~~~s--- 308 (895)
T KOG2076|consen 252 QKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI--------------------THNERERAAKALEGALS--- 308 (895)
T ss_pred HHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH--------------------HhhHHHHHHHHHHHHHh---
Confidence 9999999999999999998664443332222122111101 11111222222211100
Q ss_pred hhcCCCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCC----------------------------CCCCchhhHHHHHHHh
Q 035707 295 LGKIEWDPSIIDHLSFALSVSGELWTLAHQVEELLP----------------------------GVMGNKKRYCTLALCY 346 (713)
Q Consensus 295 l~~~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~----------------------------~~~~~~~~~~~la~~~ 346 (713)
......+-...+.++..+....+++.+...+-..-. ....+... ..+..|+
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL 387 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICL 387 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhh
Confidence 001111223334444445555555444433322111 00000111 2334444
Q ss_pred hcc-----------------cCC-CChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhc
Q 035707 347 LGE-----------------ENS-DCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQ 408 (713)
Q Consensus 347 ~~~-----------------~~p-~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~ 408 (713)
... ..| +++..++.++..+...|++. +|+.++..++..-.-.+. ..|+.+|.||
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~-~Al~~l~~i~~~~~~~~~----~vw~~~a~c~--- 459 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYK-EALRLLSPITNREGYQNA----FVWYKLARCY--- 459 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHH-HHHHHHHHHhcCccccch----hhhHHHHHHH---
Confidence 433 123 46788999999999999999 999999999983223333 7899999999
Q ss_pred ccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCc--------hHHHH
Q 035707 409 SRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSN--------VKGYL 480 (713)
Q Consensus 409 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~--------~~~~~ 480 (713)
...|.+++|++.|++++ .+.|++.++...|+.++.++|+.++|++.+.....-++.+. .....
T Consensus 460 --------~~l~e~e~A~e~y~kvl-~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~ 530 (895)
T KOG2076|consen 460 --------MELGEYEEAIEFYEKVL-ILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILA 530 (895)
T ss_pred --------HHHhhHHHHHHHHHHHH-hcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHH
Confidence 88999999999999999 99999999999999999999999999999998763332221 02344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcc-------C---------------------------------CC-----------
Q 035707 481 LLARVLSAQKQFADAESVINDSLDQT-------G---------------------------------KW----------- 509 (713)
Q Consensus 481 ~la~~~~~~g~~~~A~~~~~~al~~~-------p---------------------------------~~----------- 509 (713)
....++...|+.++=+......+... | ++
T Consensus 531 ~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~ 610 (895)
T KOG2076|consen 531 HRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGT 610 (895)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchh
Confidence 55667777777665333222221110 0 00
Q ss_pred ------------Cc-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhh--------hhhhhhh------------
Q 035707 510 ------------DQ-GELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSF--------SAGKNLV------------ 556 (713)
Q Consensus 510 ------------~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~--------~~~~~~~------------ 556 (713)
++ ...+..+...+.+.+++++|......++...--..... +....+.
T Consensus 611 ~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR 690 (895)
T KOG2076|consen 611 EFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLR 690 (895)
T ss_pred hhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 00 13445667788889999999998888876532111111 0000000
Q ss_pred ---hhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 035707 557 ---KNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYS-ASGWHSTGLLYEAKGLQQEALVSFRKALDAE 632 (713)
Q Consensus 557 ---~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 632 (713)
........+.....|+..-......++-.-=...+..+....|.+ +......|......+.+.-|+..|-++...+
T Consensus 691 ~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~ 770 (895)
T KOG2076|consen 691 SVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQN 770 (895)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhC
Confidence 001111234445555543334444444333344444555556665 5556667888888999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHh--cCC------ChHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHc
Q 035707 633 PNHVPSLVSIARVLRQI--GGE------SMATIRCFLTDALRLDRT--NTTAWYNLGLLYKTYAGASALEAVECFEAAAL 702 (713)
Q Consensus 633 p~~~~~~~~la~~~~~~--g~~------~l~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~ 702 (713)
|++|-.-..+|.++..+ ++. .+-+++.++.+..++... ..++.|++|.+|...|- ..-|+.+|++++.
T Consensus 771 pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl--~~LA~~YYekvL~ 848 (895)
T KOG2076|consen 771 PDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGL--VHLAVSYYEKVLE 848 (895)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHccc--HHHHHHHHHHHhC
Confidence 99998777777665443 322 123566777666655443 67899999999999999 9999999999999
Q ss_pred cccCCCC
Q 035707 703 LEESAPV 709 (713)
Q Consensus 703 l~p~~~~ 709 (713)
+.|.+..
T Consensus 849 ~~p~~~~ 855 (895)
T KOG2076|consen 849 VSPKDVT 855 (895)
T ss_pred CCccccc
Confidence 9876543
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.91 E-value=4.1e-21 Score=186.75 Aligned_cols=479 Identities=15% Similarity=0.151 Sum_probs=345.9
Q ss_pred ccCchHHHHHHHHHHH----HHHHHhcCCCCCCCCCcccchHHHHHHHHHHhHHHHHhcCChhHHHHHHHHHhcccCCCC
Q 035707 163 GLGRFEEACQSCKVIL----DTVEHALPEGLPGNHSIDCKLQETLNKAVELLPELYKLAGDPDETILSYRRALLYYWNLD 238 (713)
Q Consensus 163 ~~g~~~eA~~~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~~~~al~~~~~~~ 238 (713)
..|+|.+|..--+.+- ..|...-..|+|+.. ++.-++. .+..|+.-|..+..+.||+..|+-.++...-+
T Consensus 161 ~~~~~k~aldkakdagrker~lvk~req~~~~e~i----nldltfs-vl~nlaqqy~~ndm~~ealntyeiivknkmf~- 234 (840)
T KOG2003|consen 161 ECGDFKEALDKAKDAGRKERALVKHREQQGLPEMI----NLDLTFS-VLFNLAQQYEANDMTAEALNTYEIIVKNKMFP- 234 (840)
T ss_pred hhhhHHHHHHHHHhcchhHHHHHHHHHhccchhhc----cccchHH-HHHHHHHHhhhhHHHHHHhhhhhhhhcccccC-
Confidence 4577887765544221 112222234555543 3333332 34456666777777888888887776541100
Q ss_pred hhHHHHHHHHHHHHHhhcCCCCCCCcccccccccccCCchhHHHHHHHHHHHHHHHhhcCCC-----cHHHHHHHHHHHH
Q 035707 239 IETTARIEKKFAVFLLYSGTDASPPNLRLQMELSFVPRNNIEEAVLLLLILLKKIVLGKIEW-----DPSIIDHLSFALS 313 (713)
Q Consensus 239 ~~~~~~i~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~eeA~~ll~~~~~~~~l~~~~~-----~~~~~~~l~~a~~ 313 (713)
+...+...+.++++.+.++..|+..+ .+.+.+.|. ...+++.++..+.
T Consensus 235 ----------------------nag~lkmnigni~~kkr~fskaikfy-----rmaldqvpsink~~rikil~nigvtfi 287 (840)
T KOG2003|consen 235 ----------------------NAGILKMNIGNIHFKKREFSKAIKFY-----RMALDQVPSINKDMRIKILNNIGVTFI 287 (840)
T ss_pred ----------------------CCceeeeeecceeeehhhHHHHHHHH-----HHHHhhccccchhhHHHHHhhcCeeEE
Confidence 11122345677888999999998876 566677665 3467788888899
Q ss_pred hcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcc-----------------------------cCCCChHHHHHHH--
Q 035707 314 VSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGE-----------------------------ENSDCNLELLVAS-- 362 (713)
Q Consensus 314 ~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~-----------------------------~~p~~~~~~~~~a-- 362 (713)
+.|+|+.|+..|+..+...+ +...-+.+..|+... .+|++. ++.-+
T Consensus 288 q~gqy~dainsfdh~m~~~p-n~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~--ll~eai~ 364 (840)
T KOG2003|consen 288 QAGQYDDAINSFDHCMEEAP-NFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN--LLNEAIK 364 (840)
T ss_pred ecccchhhHhhHHHHHHhCc-cHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH--HHHHHHh
Confidence 99999999999998876543 334445666666554 223321 11111
Q ss_pred HH---HHhcCCChHHHHHHHHHHHHhhhccCcchHHHH--HHHH---HHHHhhcccc----cccHHHHHhcHHHHHHHHH
Q 035707 363 KI---CAENKVCIEEGITYARKALSMLQGKCRQMASIA--NCLL---GVLLSSQSRS----VVSDSKRILKQSQALVALE 430 (713)
Q Consensus 363 ~~---~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a--~~~l---g~~~~~~~~~----~~~~~~~~~~~~~A~~~~~ 430 (713)
.- -.+..+-. .|.++.-.+.+.+.|--..-.+.. |+.- +..|...+.. ....+.+.|+++.|++++.
T Consensus 365 nd~lk~~ek~~ka-~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilk 443 (840)
T KOG2003|consen 365 NDHLKNMEKENKA-DAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILK 443 (840)
T ss_pred hHHHHHHHHhhhh-hHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHH
Confidence 11 12223333 555555555554333211000011 1110 0011000000 0012478899999999998
Q ss_pred HHHHhhCCCC-HHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccC
Q 035707 431 TAEKTMRERD-PYIIYHLCLENAEQ--RKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTG 507 (713)
Q Consensus 431 ~al~~~~p~~-~~~~~~la~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 507 (713)
-.- +.+... ..+-.++..+++.+ +++..|..+...++..+.-++ .+....|.+.+..|++++|.+.|+.++..+.
T Consensus 444 v~~-~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~-~a~~nkgn~~f~ngd~dka~~~ykeal~nda 521 (840)
T KOG2003|consen 444 VFE-KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNA-AALTNKGNIAFANGDLDKAAEFYKEALNNDA 521 (840)
T ss_pred HHH-hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCH-HHhhcCCceeeecCcHHHHHHHHHHHHcCch
Confidence 665 444322 33456676666664 478999999999999999988 9999999999999999999999999998876
Q ss_pred CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHH
Q 035707 508 KWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDA 587 (713)
Q Consensus 508 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 587 (713)
....+++++|..+..+|+.++|+++|-++-.+..++ +++++.++.+|..+.+..+|
T Consensus 522 --sc~ealfniglt~e~~~~ldeald~f~klh~il~nn----------------------~evl~qianiye~led~aqa 577 (840)
T KOG2003|consen 522 --SCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN----------------------AEVLVQIANIYELLEDPAQA 577 (840)
T ss_pred --HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh----------------------HHHHHHHHHHHHHhhCHHHH
Confidence 678899999999999999999999999988775544 89999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 035707 588 EVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRL 667 (713)
Q Consensus 588 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~ 667 (713)
++++-++..+-|+++.++..+|.+|-+.|+..+|.+++-...+..|.+.+..-.||..|....-++ +|+.+|+++--+
T Consensus 578 ie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~e--kai~y~ekaali 655 (840)
T KOG2003|consen 578 IELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSE--KAINYFEKAALI 655 (840)
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHH--HHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999888877665 999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCCC
Q 035707 668 DRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALLEESAP 708 (713)
Q Consensus 668 ~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~~ 708 (713)
.|+........+.++.+.|+ |+.|.+.|+......|.+-
T Consensus 656 qp~~~kwqlmiasc~rrsgn--yqka~d~yk~~hrkfpedl 694 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGN--YQKAFDLYKDIHRKFPEDL 694 (840)
T ss_pred CccHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHhCccch
Confidence 99988888889999999999 9999999999988888763
No 36
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.6e-21 Score=195.69 Aligned_cols=263 Identities=15% Similarity=0.114 Sum_probs=234.8
Q ss_pred HHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHH
Q 035707 416 SKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADA 495 (713)
Q Consensus 416 ~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A 495 (713)
....+++.+..+.++..+ ..+|-++..+-...-++.+.|+..+=...-.++++..|..+ ..|+.+|.-|...|++.+|
T Consensus 254 ~y~~c~f~~c~kit~~ll-e~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a-~sW~aVg~YYl~i~k~seA 331 (611)
T KOG1173|consen 254 LYYGCRFKECLKITEELL-EKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKA-LSWFAVGCYYLMIGKYSEA 331 (611)
T ss_pred HHHcChHHHHHHHhHHHH-hhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCC-cchhhHHHHHHHhcCcHHH
Confidence 445688888888888888 88887766654444488888888887778888888899988 9999999999999999999
Q ss_pred HHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHH
Q 035707 496 ESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLA 575 (713)
Q Consensus 496 ~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 575 (713)
..+|.++..++| ....+|...|..+...|..++|+..|..+-++.|.. ..-...+|
T Consensus 332 Rry~SKat~lD~--~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~----------------------hlP~LYlg 387 (611)
T KOG1173|consen 332 RRYFSKATTLDP--TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC----------------------HLPSLYLG 387 (611)
T ss_pred HHHHHHHhhcCc--cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC----------------------cchHHHHH
Confidence 999999999999 789999999999999999999999999999986643 34455688
Q ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----C---CCHHHHHHHHHHHHH
Q 035707 576 NVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAE----P---NHVPSLVSIARVLRQ 648 (713)
Q Consensus 576 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~----p---~~~~~~~~la~~~~~ 648 (713)
.-|.++++++-|..+|.+++.+.|.+|.+++.+|.+.+..+.|.+|..+|+.++..- + .-.+.+.+||.++.+
T Consensus 388 mey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk 467 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK 467 (611)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999432 2 234679999999999
Q ss_pred hcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCCC
Q 035707 649 IGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALLEESAP 708 (713)
Q Consensus 649 ~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~~ 708 (713)
++.++ +|+.++++++.+.|.++.++..+|.+|..+|+ ++.|++.|.+++.+.|++.
T Consensus 468 l~~~~--eAI~~~q~aL~l~~k~~~~~asig~iy~llgn--ld~Aid~fhKaL~l~p~n~ 523 (611)
T KOG1173|consen 468 LNKYE--EAIDYYQKALLLSPKDASTHASIGYIYHLLGN--LDKAIDHFHKALALKPDNI 523 (611)
T ss_pred HhhHH--HHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC--hHHHHHHHHHHHhcCCccH
Confidence 99997 99999999999999999999999999999999 9999999999999999984
No 37
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.91 E-value=4.7e-19 Score=203.25 Aligned_cols=402 Identities=12% Similarity=0.020 Sum_probs=264.5
Q ss_pred HhHHHHHhcCChhHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHhhcCCCCCCCcccccccccccCCchhHHHHHHHHH
Q 035707 209 LLPELYKLAGDPDETILSYRRALLYYWNLDIETTARIEKKFAVFLLYSGTDASPPNLRLQMELSFVPRNNIEEAVLLLLI 288 (713)
Q Consensus 209 ~l~~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~i~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~eeA~~ll~~ 288 (713)
.+-..|.+.|+.++|...|++|...++.||..++.. +...|...|++++|+.+|..
T Consensus 477 sLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTyna------------------------LI~gy~k~G~~eeAl~lf~~ 532 (1060)
T PLN03218 477 TLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGA------------------------LIDGCARAGQVAKAFGAYGI 532 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHH------------------------HHHHHHHCcCHHHHHHHHHH
Confidence 344556666666666666666666555555544432 22235556777888777643
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHhc
Q 035707 289 LLKKIVLGKIEWDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICAEN 368 (713)
Q Consensus 289 ~~~~~~l~~~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~~ 368 (713)
+ .......|..+++.|..+|.+.|+++.|.+.|+++...... ..|+ ...+..+...|.+.
T Consensus 533 M----~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g---------------i~PD-~vTynaLI~ay~k~ 592 (1060)
T PLN03218 533 M----RSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP---------------IDPD-HITVGALMKACANA 592 (1060)
T ss_pred H----HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC---------------CCCc-HHHHHHHHHHHHHC
Confidence 3 23345567788888888888888888888888887531100 1233 44555666678888
Q ss_pred CCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhC-CCCHHHHHHH
Q 035707 369 KVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMR-ERDPYIIYHL 447 (713)
Q Consensus 369 g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-p~~~~~~~~l 447 (713)
|+++ +|.++|+.+.+...+.+. ..|..+...| .+.|++++|+.+|.++. ... ..+..++..+
T Consensus 593 G~ld-eA~elf~~M~e~gi~p~~----~tynsLI~ay-----------~k~G~~deAl~lf~eM~-~~Gv~PD~~TynsL 655 (1060)
T PLN03218 593 GQVD-RAKEVYQMIHEYNIKGTP----EVYTIAVNSC-----------SQKGDWDFALSIYDDMK-KKGVKPDEVFFSAL 655 (1060)
T ss_pred CCHH-HHHHHHHHHHHcCCCCCh----HHHHHHHHHH-----------HhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHH
Confidence 8888 888888888873334445 7788888888 67788888888888887 542 2356678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCC
Q 035707 448 CLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGR 527 (713)
Q Consensus 448 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~ 527 (713)
...|.+.|++++|.+.++.+.+........++..+...|.+.|++++|..+|+++.+.... .+...|..+...|.+.|+
T Consensus 656 I~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~-PdvvtyN~LI~gy~k~G~ 734 (1060)
T PLN03218 656 VDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR-PTVSTMNALITALCEGNQ 734 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHCCC
Confidence 8888888888888888888887653322278888888888888888888888888765433 256778888888888888
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhHHH
Q 035707 528 LKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPY-SASGWH 606 (713)
Q Consensus 528 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~ 606 (713)
+++|++.|+++.... ...+..+|..+...+.+.|++++|..++.++++.... +..++.
T Consensus 735 ~eeAlelf~eM~~~G---------------------i~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tyn 793 (1060)
T PLN03218 735 LPKALEVLSEMKRLG---------------------LCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCR 793 (1060)
T ss_pred HHHHHHHHHHHHHcC---------------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 888888888876542 1223567777778888888888888888888765421 233333
Q ss_pred HHHHHHH----H-------------------cCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCCChHHHHHHH
Q 035707 607 STGLLYE----A-------------------KGLQQEALVSFRKALDAE--PNHVPSLVSIARVLRQIGGESMATIRCFL 661 (713)
Q Consensus 607 ~lg~~~~----~-------------------~g~~~eA~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~l~~A~~~~ 661 (713)
.+..++. + .+..++|+.+|+++++.. |+ ...+..+-.++...+... .+...+
T Consensus 794 sLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd-~~T~~~vL~cl~~~~~~~--~~~~m~ 870 (1060)
T PLN03218 794 CITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPT-MEVLSQVLGCLQLPHDAT--LRNRLI 870 (1060)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccccHH--HHHHHH
Confidence 3322211 1 112356777777777643 44 334444434555555544 565555
Q ss_pred HHHHhhCC--CCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHc
Q 035707 662 TDALRLDR--TNTTAWYNLGLLYKTYAGASA-LEAVECFEAAAL 702 (713)
Q Consensus 662 ~~al~~~p--~~~~~~~~lg~~~~~~g~~~~-~~A~~~~~~a~~ 702 (713)
+.. ...| .+...+..+-..+ |+ + ++|...|+.+..
T Consensus 871 ~~m-~~~~~~~~~~~y~~Li~g~---~~--~~~~A~~l~~em~~ 908 (1060)
T PLN03218 871 ENL-GISADSQKQSNLSTLVDGF---GE--YDPRAFSLLEEAAS 908 (1060)
T ss_pred HHh-ccCCCCcchhhhHHHHHhh---cc--ChHHHHHHHHHHHH
Confidence 442 2233 3334455554443 44 3 589999988887
No 38
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.91 E-value=1.6e-19 Score=207.06 Aligned_cols=398 Identities=13% Similarity=0.042 Sum_probs=306.7
Q ss_pred hhccCchHHHHHHHHHHHHHHHHhcCCCCCCCCCcccchHHHHHHHHHHhHHHHHhcCChhHHHHHHHHHhcccCCCChh
Q 035707 161 LQGLGRFEEACQSCKVILDTVEHALPEGLPGNHSIDCKLQETLNKAVELLPELYKLAGDPDETILSYRRALLYYWNLDIE 240 (713)
Q Consensus 161 ~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~~~~al~~~~~~~~~ 240 (713)
+.+.|++++|.+.|+.+.. .|..+ ...+. ...+-..+.+.|..++|+..|+.+.. ++..
T Consensus 380 l~r~G~l~eAl~Lfd~M~~-------~gvv~-------~~~v~---~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~ 438 (1060)
T PLN03218 380 LLRDGRIKDCIDLLEDMEK-------RGLLD-------MDKIY---HAKFFKACKKQRAVKEAFRFAKLIRN----PTLS 438 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHh-------CCCCC-------chHHH---HHHHHHHHHHCCCHHHHHHHHHHcCC----CCHH
Confidence 4466888888877776543 11110 00111 12233556778888888888877754 4555
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCcccccccccccCCchhHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCcHHH
Q 035707 241 TTARIEKKFAVFLLYSGTDASPPNLRLQMELSFVPRNNIEEAVLLLLILLKKIVLGKIEWDPSIIDHLSFALSVSGELWT 320 (713)
Q Consensus 241 ~~~~i~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~eeA~~ll~~~~~~~~l~~~~~~~~~~~~l~~a~~~~g~~~~ 320 (713)
++..+.. .+...+++++|..++.. +.....+.|..+++.|..+|.+.|+.+.
T Consensus 439 Tyn~LL~------------------------a~~k~g~~e~A~~lf~~----M~~~Gl~pD~~tynsLI~~y~k~G~vd~ 490 (1060)
T PLN03218 439 TFNMLMS------------------------VCASSQDIDGALRVLRL----VQEAGLKADCKLYTTLISTCAKSGKVDA 490 (1060)
T ss_pred HHHHHHH------------------------HHHhCcCHHHHHHHHHH----HHHcCCCCCHHHHHHHHHHHHhCcCHHH
Confidence 4433221 23445778888877643 3334566789999999999999999999
Q ss_pred HHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHH
Q 035707 321 LAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCL 400 (713)
Q Consensus 321 a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 400 (713)
|.+.|+++..... ..+...+..+...|.+.|+++ +|+.+|.++....-..+. .++..
T Consensus 491 A~~vf~eM~~~Gv------------------~PdvvTynaLI~gy~k~G~~e-eAl~lf~~M~~~Gv~PD~----vTYns 547 (1060)
T PLN03218 491 MFEVFHEMVNAGV------------------EANVHTFGALIDGCARAGQVA-KAFGAYGIMRSKNVKPDR----VVFNA 547 (1060)
T ss_pred HHHHHHHHHHcCC------------------CCCHHHHHHHHHHHHHCcCHH-HHHHHHHHHHHcCCCCCH----HHHHH
Confidence 9999999865321 235667777788899999999 999999998774333445 78888
Q ss_pred HHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc-CCch
Q 035707 401 LGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMR---ERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEA-RSNV 476 (713)
Q Consensus 401 lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~ 476 (713)
+...| .+.|++++|.++|.++. ... ..+..++..+...|.+.|++++|.+.|+.+.+.+. .+.
T Consensus 548 LI~a~-----------~k~G~~deA~~lf~eM~-~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~- 614 (1060)
T PLN03218 548 LISAC-----------GQSGAVDRAFDVLAEMK-AETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTP- 614 (1060)
T ss_pred HHHHH-----------HHCCCHHHHHHHHHHHH-HhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCh-
Confidence 88888 67888899999999987 531 23467888899999999999999999999988763 334
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 035707 477 KGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLV 556 (713)
Q Consensus 477 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 556 (713)
.+|..+...|.+.|++++|..+|+++.+..-.+ +...+..+...+...|++++|.+.++.+.+...
T Consensus 615 ~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~------------- 680 (1060)
T PLN03218 615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGI------------- 680 (1060)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-------------
Confidence 799999999999999999999999998875433 567888999999999999999999999886521
Q ss_pred hhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C
Q 035707 557 KNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAI--NPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAE-P 633 (713)
Q Consensus 557 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-p 633 (713)
..+..+|..+...|.+.|++++|..+|+++... .| +...|+.+...|.+.|++++|++.|+++.... .
T Consensus 681 --------~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~ 751 (1060)
T PLN03218 681 --------KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751 (1060)
T ss_pred --------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 334778999999999999999999999998654 44 67789999999999999999999999987643 2
Q ss_pred CCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhC
Q 035707 634 NHVPSLVSIARVLRQIGGESMATIRCFLTDALRLD 668 (713)
Q Consensus 634 ~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~ 668 (713)
.+...+..+...+.+.|+.+ +|..++.++++..
T Consensus 752 Pd~~Ty~sLL~a~~k~G~le--~A~~l~~~M~k~G 784 (1060)
T PLN03218 752 PNTITYSILLVASERKDDAD--VGLDLLSQAKEDG 784 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHcC
Confidence 34667888888999999987 9999999998753
No 39
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.89 E-value=7e-21 Score=179.16 Aligned_cols=314 Identities=15% Similarity=0.044 Sum_probs=272.3
Q ss_pred cCCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHH
Q 035707 350 ENSDCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVAL 429 (713)
Q Consensus 350 ~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~ 429 (713)
.+|.++.-.+.+|+.++..|++. +|+..|..+++ .+|.+. .+++..+.+| ...|.-.-|+..+
T Consensus 33 ~~~advekhlElGk~lla~~Q~s-DALt~yHaAve-~dp~~Y----~aifrRaT~y-----------LAmGksk~al~Dl 95 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLS-DALTHYHAAVE-GDPNNY----QAIFRRATVY-----------LAMGKSKAALQDL 95 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHc-CCchhH----HHHHHHHHHH-----------hhhcCCccchhhH
Confidence 46778888999999999999999 99999999999 999999 9999999999 6666669999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCch--HHH------------HHHHHHHHHcCCHHHH
Q 035707 430 ETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNV--KGY------------LLLARVLSAQKQFADA 495 (713)
Q Consensus 430 ~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~------------~~la~~~~~~g~~~~A 495 (713)
.+++ .+.|+...+....|.++.++|++++|...|+.+++.+|.+.. ++. ......++..|+...|
T Consensus 96 ~rVl-elKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~a 174 (504)
T KOG0624|consen 96 SRVL-ELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNA 174 (504)
T ss_pred HHHH-hcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhH
Confidence 9999 999999999999999999999999999999999999986531 122 2223345567999999
Q ss_pred HHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHH
Q 035707 496 ESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLA 575 (713)
Q Consensus 496 ~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 575 (713)
+......+++.| -+..++...+.+|...|++..||.-++.+-++..++ .+.++.++
T Consensus 175 i~~i~~llEi~~--Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~Dn----------------------Te~~ykis 230 (504)
T KOG0624|consen 175 IEMITHLLEIQP--WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDN----------------------TEGHYKIS 230 (504)
T ss_pred HHHHHHHHhcCc--chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccc----------------------hHHHHHHH
Confidence 999999999998 588999999999999999999999999988875443 88999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCChhHHHH------------HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH----
Q 035707 576 NVYTSLSQWRDAEVCLSKSKAINPYSASGWHS------------TGLLYEAKGLQQEALVSFRKALDAEPNHVPSL---- 639 (713)
Q Consensus 576 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~------------lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~---- 639 (713)
.+++..|+.+.++...+++++++|++...+-. -+.-....++|.++++..++.++.+|..+...
T Consensus 231 ~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~ 310 (504)
T KOG0624|consen 231 QLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGF 310 (504)
T ss_pred HHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeee
Confidence 99999999999999999999999987543321 12234567899999999999999999855443
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCCCC
Q 035707 640 VSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALLEESAPV 709 (713)
Q Consensus 640 ~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~~~ 709 (713)
..+..++..-|++. +|+....+++..+|++..++...+.+|..... |++|+.-|++|.+.+|++..
T Consensus 311 r~~c~C~~~d~~~~--eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~--YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 311 RVLCTCYREDEQFG--EAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEM--YDDAIHDYEKALELNESNTR 376 (504)
T ss_pred heeeecccccCCHH--HHHHHHHHHHhcCchHHHHHHHHHHHHhhhHH--HHHHHHHHHHHHhcCcccHH
Confidence 34566667777776 99999999999999999999999999999999 99999999999999998753
No 40
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.1e-18 Score=166.57 Aligned_cols=299 Identities=15% Similarity=0.100 Sum_probs=263.2
Q ss_pred HHHHHhcCCChHHHHHHH--HHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCC
Q 035707 362 SKICAENKVCIEEGITYA--RKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRER 439 (713)
Q Consensus 362 a~~~~~~g~~~~~A~~~~--~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~ 439 (713)
+......+++. .|...+ -.-.. .-+.|. ..+..+|.++ ...|++++|+..|+++. .++|.
T Consensus 203 a~Aq~~~~~hs-~a~~t~l~le~~~-~lr~Nv----hLl~~lak~~-----------~~~Gdn~~a~~~Fe~~~-~~dpy 264 (564)
T KOG1174|consen 203 ALAQMFNFKHS-DASQTFLMLHDNT-TLRCNE----HLMMALGKCL-----------YYNGDYFQAEDIFSSTL-CANPD 264 (564)
T ss_pred HHHHHHhcccc-hhhhHHHHHHhhc-cCCccH----HHHHHHhhhh-----------hhhcCchHHHHHHHHHh-hCChh
Confidence 33344455555 554443 33333 567777 8888899999 89999999999999999 99999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHH
Q 035707 440 DPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKA 519 (713)
Q Consensus 440 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la 519 (713)
+....-..|..+...|++++-.......+....... .-|+.-+..++..+++..|+.+-+++++.+| .+..++...|
T Consensus 265 ~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta-~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~--r~~~alilKG 341 (564)
T KOG1174|consen 265 NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTA-SHWFVHAQLLYDEKKFERALNFVEKCIDSEP--RNHEALILKG 341 (564)
T ss_pred hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcch-hhhhhhhhhhhhhhhHHHHHHHHHHHhccCc--ccchHHHhcc
Confidence 999999999999999999999888888888876666 7888889999999999999999999999998 7899999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Q 035707 520 KLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINP 599 (713)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 599 (713)
.++...|++++|+-.|+.+..+.|. +.+.|..|..+|...|++.+|...-+.++...|
T Consensus 342 ~lL~~~~R~~~A~IaFR~Aq~Lap~----------------------rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~ 399 (564)
T KOG1174|consen 342 RLLIALERHTQAVIAFRTAQMLAPY----------------------RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQ 399 (564)
T ss_pred HHHHhccchHHHHHHHHHHHhcchh----------------------hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhh
Confidence 9999999999999999999998654 489999999999999999999999999999999
Q ss_pred CChhHHHHHH-HHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHH
Q 035707 600 YSASGWHSTG-LLYEA-KGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYN 677 (713)
Q Consensus 600 ~~~~~~~~lg-~~~~~-~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~ 677 (713)
.++.++..+| .++.. -.--++|.+.+++++.++|.+..+...++.++...|++. .++..+++.+...|+. ..+..
T Consensus 400 ~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~--D~i~LLe~~L~~~~D~-~LH~~ 476 (564)
T KOG1174|consen 400 NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTK--DIIKLLEKHLIIFPDV-NLHNH 476 (564)
T ss_pred cchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccc--hHHHHHHHHHhhcccc-HHHHH
Confidence 9999999887 44433 334688999999999999999999999999999999998 9999999999998875 57889
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHccccCCC
Q 035707 678 LGLLYKTYAGASALEAVECFEAAALLEESAP 708 (713)
Q Consensus 678 lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~~ 708 (713)
||+++...+. +++|.++|..|+.++|++.
T Consensus 477 Lgd~~~A~Ne--~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 477 LGDIMRAQNE--PQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHHHHHHhhh--HHHHHHHHHHHHhcCccch
Confidence 9999999999 9999999999999999874
No 41
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.88 E-value=2.6e-19 Score=168.67 Aligned_cols=358 Identities=16% Similarity=0.104 Sum_probs=293.4
Q ss_pred CCCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHhcCCChHHHHH
Q 035707 298 IEWDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICAENKVCIEEGIT 377 (713)
Q Consensus 298 ~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~~A~~ 377 (713)
.|.+..-...||..+...||+..|..+|-.++.+ +|++..+++..|.+|+..|+-. -|+.
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~-------------------dp~~Y~aifrRaT~yLAmGksk-~al~ 93 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEG-------------------DPNNYQAIFRRATVYLAMGKSK-AALQ 93 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC-------------------CchhHHHHHHHHHHHhhhcCCc-cchh
Confidence 3445555667889999999999999999998885 6899999999999999999999 9999
Q ss_pred HHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHH---H-----------
Q 035707 378 YARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPY---I----------- 443 (713)
Q Consensus 378 ~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~---~----------- 443 (713)
-+.++++ +.|+-. -+....|.++ .++|.+++|...|...+ ..+|.+.. +
T Consensus 94 Dl~rVle-lKpDF~----~ARiQRg~vl-----------lK~Gele~A~~DF~~vl-~~~~s~~~~~eaqskl~~~~e~~ 156 (504)
T KOG0624|consen 94 DLSRVLE-LKPDFM----AARIQRGVVL-----------LKQGELEQAEADFDQVL-QHEPSNGLVLEAQSKLALIQEHW 156 (504)
T ss_pred hHHHHHh-cCccHH----HHHHHhchhh-----------hhcccHHHHHHHHHHHH-hcCCCcchhHHHHHHHHhHHHHH
Confidence 9999999 788877 8888999999 78888999999999999 88885422 2
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHH
Q 035707 444 -IYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQ 522 (713)
Q Consensus 444 -~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~ 522 (713)
+......++..|++..|+.....++++.|-+. ..+...+.+|...|+...|+.-++.+-++.. ++.+.++.+..++
T Consensus 157 ~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda-~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~--DnTe~~ykis~L~ 233 (504)
T KOG0624|consen 157 VLVQQLKSASGSGDCQNAIEMITHLLEIQPWDA-SLRQARAKCYIAEGEPKKAIHDLKQASKLSQ--DNTEGHYKISQLL 233 (504)
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHhcCcchh-HHHHHHHHHHHhcCcHHHHHHHHHHHHhccc--cchHHHHHHHHHH
Confidence 23344556678999999999999999999988 8999999999999999999999999999987 7899999999999
Q ss_pred HHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh
Q 035707 523 IAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSA 602 (713)
Q Consensus 523 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 602 (713)
...|+.+.++...+..|+++|++..-+.....+.+ ..-...-+.-....++|.++++..++.++.+|..+
T Consensus 234 Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkK----------v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~ 303 (504)
T KOG0624|consen 234 YTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKK----------VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEET 303 (504)
T ss_pred HhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHH----------HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCccc
Confidence 99999999999999999999987544433222222 22222334455678999999999999999999854
Q ss_pred h----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 035707 603 S----GWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNL 678 (713)
Q Consensus 603 ~----~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~l 678 (713)
. .+..+..++...|++.+|+..+.+++..+|+++.++...+.+|.-...|| .|+..|++|.+.++++..+.-.+
T Consensus 304 ~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD--~AI~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 304 MIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYD--DAIHDYEKALELNESNTRAREGL 381 (504)
T ss_pred ceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHH--HHHHHHHHHHhcCcccHHHHHHH
Confidence 4 34456778888999999999999999999999999999999999999998 99999999999999998765443
Q ss_pred HHH------------HHHhCC---CCHHHHHHHHHHHHc-cccCC
Q 035707 679 GLL------------YKTYAG---ASALEAVECFEAAAL-LEESA 707 (713)
Q Consensus 679 g~~------------~~~~g~---~~~~~A~~~~~~a~~-l~p~~ 707 (713)
-.+ |.-+|- ++..+-...|+++.+ -.|+|
T Consensus 382 e~Akrlkkqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDN 426 (504)
T KOG0624|consen 382 ERAKRLKKQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDN 426 (504)
T ss_pred HHHHHHHHHhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCcc
Confidence 222 111111 135666777777654 46665
No 42
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.88 E-value=4.4e-18 Score=177.10 Aligned_cols=590 Identities=18% Similarity=0.098 Sum_probs=390.3
Q ss_pred ChHHHhhhhhhhcc---CC---HHHHHHHhhhHhhhcCCHHHHHhhhhcCCccccchhhhhhhhhhccccccCCCCCCCC
Q 035707 67 NIEEAESSLRESGY---LN---YEEARALLGRLEFQKGNIEAALHVFEGIDVAAVTSRMKVSLSRRCDQNRRRSQSDAAP 140 (713)
Q Consensus 67 ~~~~A~~~l~~~l~---~~---~~~a~~llg~~~~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (713)
..-+|+..+-++|. .+ -.||..+++...|..|-+.+|++.|.+..+++......+
T Consensus 19 ~~~~A~~~l~~~L~~~~~~~~~~~ea~~~lakl~~a~~~e~~ai~~~~~s~i~~~~~~~~~------------------- 79 (799)
T KOG4162|consen 19 GLSEAIPELHRALHKHNSSKSFVCEAMLILAKLDYACGEERKAIRNFSASGIDNQYSENLP------------------- 79 (799)
T ss_pred chHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhhhcccHHHHHHHHHHHhhcccccccccc-------------------
Confidence 36688999999983 22 689999999999999999999999987655554444333
Q ss_pred CcchhHHHHHHHHHHHh---------------hhhhhccCchHHHHHHHHHH----------HHHHHH-hcCCCCCCC--
Q 035707 141 PMSMHAVSLLVEAIFLK---------------TKSLQGLGRFEEACQSCKVI----------LDTVEH-ALPEGLPGN-- 192 (713)
Q Consensus 141 ~~~~~~~~~~~e~~~~~---------------~~~~~~~g~~~eA~~~~~~~----------l~~~~~-~~~~~~~~~-- 192 (713)
....+++.|++..+ +..-++.|+.++|...|+.+ ++++.. ..+.+.+..
T Consensus 80 ---~~~~~~l~Ea~~il~~glsle~ee~~~~s~~~~~qr~~~e~al~vFe~~~i~~~~~~~e~~i~~~s~~s~~~~s~~~ 156 (799)
T KOG4162|consen 80 ---LLDLRLLAEAEAILREGLSLEYEEARALSGRLEYQRGNDEAALRVFEGIDILAITYLQELEIVQNSNSSLRQRSKAS 156 (799)
T ss_pred ---hhhhhhHHHHHHHHhhhcccchhhhhhhhhhHHHhhcCcHHHHHHhcccchhHHHHHHHHHHHhccCccccCCCccc
Confidence 22233444544444 44445778899999999832 222222 222222221
Q ss_pred CCcccc-----hHHHHHHHHHHhH-HHHHhcCChhHHHHHHHHHhcccCC----CChhHHHHHHHHHHHHHhhcCC----
Q 035707 193 HSIDCK-----LQETLNKAVELLP-ELYKLAGDPDETILSYRRALLYYWN----LDIETTARIEKKFAVFLLYSGT---- 258 (713)
Q Consensus 193 ~~~~~~-----~~~~~~~a~~~l~-~~~~~~g~~~eA~~~~~~al~~~~~----~~~~~~~~i~~~~a~~ll~~~~---- 258 (713)
+...+. ..-.+..++..++ ..+.+.|++.||++.++.++..-.. .-..+. .....+..++.....
T Consensus 157 ~a~~p~~~~s~~~~~Le~~l~~lk~k~L~~~~~iqea~e~cr~~L~~ve~~~t~~~~~~~-s~~~~l~~vl~~~~~~~~~ 235 (799)
T KOG4162|consen 157 FAIEPSTVMSAHGAILEAELIKLKAKSLKRLGRIQEAAEECRSVLDIVETKATQGSKDTE-SGALKLQEVLSRAVELLPI 235 (799)
T ss_pred cccCCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchH-HHHHHHHHHHHHHHHHhHH
Confidence 111111 1112222222222 3466777999999999998765111 000000 111112222111111
Q ss_pred ---CCCCCc------c----------------cccccccccCCchhHHHHHHHHHHHHHHHhhcCCC----cHHHHHHHH
Q 035707 259 ---DASPPN------L----------------RLQMELSFVPRNNIEEAVLLLLILLKKIVLGKIEW----DPSIIDHLS 309 (713)
Q Consensus 259 ---~~~~~~------~----------------~~~~~~~~~~~~~~eeA~~ll~~~~~~~~l~~~~~----~~~~~~~l~ 309 (713)
..+.+. . .+.....|.|.++.|+.+++++|. . ..+|. |..+...+.
T Consensus 236 Lw~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~--e---s~i~Re~~~d~ilslm~~ 310 (799)
T KOG4162|consen 236 LWKKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIE--E---SLIPRENIEDAILSLMLL 310 (799)
T ss_pred HhcCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHH--h---hccccccHHHHHHHHHHH
Confidence 000110 0 012344789999999997666543 1 12333 555555556
Q ss_pred HHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcc--cCCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhh
Q 035707 310 FALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGE--ENSDCNLELLVASKICAENKVCIEEGITYARKALSMLQ 387 (713)
Q Consensus 310 ~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~--~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~ 387 (713)
.-..+.+.+.-+...|+.. .......+.+..++.++... ..-.....|...+..+...|... .|+...+..+. ..
T Consensus 311 ~~k~r~~~~qnd~ai~d~L-t~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s-~Av~ll~~~~~-~~ 387 (799)
T KOG4162|consen 311 LRKLRLKKFQNDAAIFDHL-TFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDS-KAVNLLRESLK-KS 387 (799)
T ss_pred HHHHHHhhhcchHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccch-HHHHHHHhhcc-cc
Confidence 6666666666555555542 12222333344444444443 22345677888888888889988 99999999887 44
Q ss_pred --ccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHHHc------
Q 035707 388 --GKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMR-----ERDPYIIYHLCLENAEQ------ 454 (713)
Q Consensus 388 --~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-----p~~~~~~~~la~~~~~~------ 454 (713)
|.+. ..+.+....+. .+.+..++++.+-.+++ ... .-.+..+..+|.+|..+
T Consensus 388 ~~ps~~----s~~Lmasklc~----------e~l~~~eegldYA~kai-~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~ 452 (799)
T KOG4162|consen 388 EQPSDI----SVLLMASKLCI----------ERLKLVEEGLDYAQKAI-SLLGGQRSHLKPRGYLFLGIAYGFQARQANL 452 (799)
T ss_pred cCCCcc----hHHHHHHHHHH----------hchhhhhhHHHHHHHHH-HHhhhhhhhhhhhHHHHHHHHHHhHhhcCCC
Confidence 5444 44444444442 78899999999999999 632 12366778888887543
Q ss_pred -----CCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHH
Q 035707 455 -----RKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLK 529 (713)
Q Consensus 455 -----g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~ 529 (713)
....++++.++++++.+|.|+ .+.+.++.-|..+++.+.|....+++++.++. ++...|..++.++...+++.
T Consensus 453 ~seR~~~h~kslqale~av~~d~~dp-~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~-~~~~~whLLALvlSa~kr~~ 530 (799)
T KOG4162|consen 453 KSERDALHKKSLQALEEAVQFDPTDP-LVIFYLALQYAEQRQLTSALDYAREALALNRG-DSAKAWHLLALVLSAQKRLK 530 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhhH
Confidence 234689999999999999999 99999999999999999999999999999765 68999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccH-------HHHHH----------------HHHHHHHHCCCHHH
Q 035707 530 NAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLE-------METWH----------------DLANVYTSLSQWRD 586 (713)
Q Consensus 530 ~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~----------------~la~~~~~~g~~~~ 586 (713)
+|+...+.++.-.|++.........+.. ...+.... ...|- ..+......++..+
T Consensus 531 ~Al~vvd~al~E~~~N~~l~~~~~~i~~--~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~ 608 (799)
T KOG4162|consen 531 EALDVVDAALEEFGDNHVLMDGKIHIEL--TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTD 608 (799)
T ss_pred HHHHHHHHHHHHhhhhhhhchhhhhhhh--hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccc
Confidence 9999999999988875332221111100 00000000 11111 11222223445556
Q ss_pred HHHHHHHHHhc--------C-----C--------CC-----hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 035707 587 AEVCLSKSKAI--------N-----P--------YS-----ASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLV 640 (713)
Q Consensus 587 A~~~~~~al~~--------~-----p--------~~-----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 640 (713)
|.....++... . | .+ ...|...+..+...++.++|..++.++-.++|-.+..|+
T Consensus 609 a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~ 688 (799)
T KOG4162|consen 609 AISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYY 688 (799)
T ss_pred cchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHH
Confidence 66655554321 0 1 11 235778899999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHccccCCCCC
Q 035707 641 SIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVE--CFEAAALLEESAPVE 710 (713)
Q Consensus 641 ~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~--~~~~a~~l~p~~~~~ 710 (713)
..|.++...|+.. +|...|..++.++|+++.+...+|.++.+.|+ ..-|.. .+..+++++|++|.+
T Consensus 689 ~~G~~~~~~~~~~--EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~--~~la~~~~~L~dalr~dp~n~ea 756 (799)
T KOG4162|consen 689 LRGLLLEVKGQLE--EAKEAFLVALALDPDHVPSMTALAELLLELGS--PRLAEKRSLLSDALRLDPLNHEA 756 (799)
T ss_pred HhhHHHHHHHhhH--HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC--cchHHHHHHHHHHHhhCCCCHHH
Confidence 9999999999997 99999999999999999999999999999999 777777 999999999999853
No 43
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.87 E-value=9.1e-18 Score=170.79 Aligned_cols=457 Identities=13% Similarity=0.048 Sum_probs=345.0
Q ss_pred cCChhHHHHHHHHHhcccCCCChhHHHH--H-----HHHHHHHHhhcCCCCCCCcccc-----cccccccCCchhHHH--
Q 035707 217 AGDPDETILSYRRALLYYWNLDIETTAR--I-----EKKFAVFLLYSGTDASPPNLRL-----QMELSFVPRNNIEEA-- 282 (713)
Q Consensus 217 ~g~~~eA~~~~~~al~~~~~~~~~~~~~--i-----~~~~a~~ll~~~~~~~~~~~~~-----~~~~~~~~~~~~eeA-- 282 (713)
.++...|...+....+.+|+-++.=+++ + ..+.|..++..|++.+|.+.-. .+...-..+.-+..|
T Consensus 264 l~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRLhp~d~aK~vvA~Avr 343 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRLHPPDVAKTVVANAVR 343 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 3567788888888888776633332222 2 3456777888888765544221 111111111111111
Q ss_pred ------------HHHHHHH-----HHHHHhhcCCCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHH
Q 035707 283 ------------VLLLLIL-----LKKIVLGKIEWDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALC 345 (713)
Q Consensus 283 ------------~~ll~~~-----~~~~~l~~~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~ 345 (713)
..+-... +.+..|..+|.+..++... ......+.|.-.++++....+...+.|..++..
T Consensus 344 ~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaA----VelE~~~darilL~rAveccp~s~dLwlAlarL 419 (913)
T KOG0495|consen 344 FLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAA----VELEEPEDARILLERAVECCPQSMDLWLALARL 419 (913)
T ss_pred hCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHH----HhccChHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 1111111 3345667788777666533 334556668888888888888888888877754
Q ss_pred --hhcc---------cCCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccc---
Q 035707 346 --YLGE---------ENSDCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRS--- 411 (713)
Q Consensus 346 --~~~~---------~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~--- 411 (713)
|..+ .-|.++..|+..+++--.+|+.+ .-.++..+.+..+..+........|..-+...-..|..
T Consensus 420 etYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~-mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~Tc 498 (913)
T KOG0495|consen 420 ETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVD-MVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITC 498 (913)
T ss_pred HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHH-HHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhH
Confidence 4333 56888889999998888888888 88888887776443332222222222222222111100
Q ss_pred -----------ccc------------HHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 035707 412 -----------VVS------------DSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLL 468 (713)
Q Consensus 412 -----------~~~------------~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 468 (713)
... .....+.++-|..+|..++ +.+|.....|...+..--..|..+.-...+++++
T Consensus 499 QAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~al-qvfp~k~slWlra~~~ek~hgt~Esl~Allqkav 577 (913)
T KOG0495|consen 499 QAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHAL-QVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAV 577 (913)
T ss_pred HHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHH-hhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 000 1345577788888888999 8899888888888888888888888888899999
Q ss_pred hhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhh
Q 035707 469 NLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKS 548 (713)
Q Consensus 469 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 548 (713)
...|... ..|.+.+..+...|+...|..++..+++.+| .+..+|+....+.....+++.|..+|.++....|
T Consensus 578 ~~~pkae-~lwlM~ake~w~agdv~~ar~il~~af~~~p--nseeiwlaavKle~en~e~eraR~llakar~~sg----- 649 (913)
T KOG0495|consen 578 EQCPKAE-ILWLMYAKEKWKAGDVPAARVILDQAFEANP--NSEEIWLAAVKLEFENDELERARDLLAKARSISG----- 649 (913)
T ss_pred HhCCcch-hHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC--CcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-----
Confidence 8888877 8888888888888999999999999999888 6788888888888888999999998888877644
Q ss_pred hhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 035707 549 FSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKA 628 (713)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~a 628 (713)
...+|+.-+.+...+++.++|+.+++++++..|+....|..+|.++..+++.+.|...|...
T Consensus 650 ------------------TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G 711 (913)
T KOG0495|consen 650 ------------------TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQG 711 (913)
T ss_pred ------------------cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 37889999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCCC
Q 035707 629 LDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALLEESAP 708 (713)
Q Consensus 629 l~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~~ 708 (713)
++.-|..++.|..++.+--+.|... .|+..++++.-.+|++...|......-.+.|+ .+.|.....+|++-.|++.
T Consensus 712 ~k~cP~~ipLWllLakleEk~~~~~--rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn--~~~a~~lmakALQecp~sg 787 (913)
T KOG0495|consen 712 TKKCPNSIPLWLLLAKLEEKDGQLV--RARSILDRARLKNPKNALLWLESIRMELRAGN--KEQAELLMAKALQECPSSG 787 (913)
T ss_pred cccCCCCchHHHHHHHHHHHhcchh--hHHHHHHHHHhcCCCcchhHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCccc
Confidence 9999999999999999999999887 99999999999999999999999999999999 9999999999999999875
Q ss_pred C
Q 035707 709 V 709 (713)
Q Consensus 709 ~ 709 (713)
.
T Consensus 788 ~ 788 (913)
T KOG0495|consen 788 L 788 (913)
T ss_pred h
Confidence 3
No 44
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=1.1e-18 Score=194.79 Aligned_cols=366 Identities=11% Similarity=-0.019 Sum_probs=205.8
Q ss_pred CCCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHhcCCChHHHHH
Q 035707 298 IEWDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICAENKVCIEEGIT 377 (713)
Q Consensus 298 ~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~~A~~ 377 (713)
.|..+...+.-+....+.|++..|...|++++.. +|+++.+...++.++...|+.. +|+.
T Consensus 30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~-------------------~P~~~~av~dll~l~~~~G~~~-~A~~ 89 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKA-------------------GPLQSGQVDDWLQIAGWAGRDQ-EVID 89 (822)
T ss_pred CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhh-------------------CccchhhHHHHHHHHHHcCCcH-HHHH
Confidence 3445555566666777888888888888887764 4555433335555555667777 7777
Q ss_pred HHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 035707 378 YARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKL 457 (713)
Q Consensus 378 ~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~ 457 (713)
++++++. -.+... .....+|.++ ...|++++|++.|++++ +.+|+++.++..++..+...++.
T Consensus 90 ~~eka~~-p~n~~~----~~llalA~ly-----------~~~gdyd~Aiely~kaL-~~dP~n~~~l~gLa~~y~~~~q~ 152 (822)
T PRK14574 90 VYERYQS-SMNISS----RGLASAARAY-----------RNEKRWDQALALWQSSL-KKDPTNPDLISGMIMTQADAGRG 152 (822)
T ss_pred HHHHhcc-CCCCCH----HHHHHHHHHH-----------HHcCCHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHhhcCCH
Confidence 7777663 223322 3444445566 55566677777777777 77777777776666777777777
Q ss_pred HHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHH-------
Q 035707 458 DVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKN------- 530 (713)
Q Consensus 458 ~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~------- 530 (713)
++|+..++++...+|.+. . +..++.++...++..+|+..++++++.+| ++..++..+..+....|-...
T Consensus 153 ~eAl~~l~~l~~~dp~~~-~-~l~layL~~~~~~~~~AL~~~ekll~~~P--~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 153 GVVLKQATELAERDPTVQ-N-YMTLSYLNRATDRNYDALQASSEAVRLAP--TSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred HHHHHHHHHhcccCcchH-H-HHHHHHHHHhcchHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 777777777776666643 2 24445555555666557777777777766 455555555555444443333
Q ss_pred -----------------------------------------HHHHHHHHHHHHhhhhhhhhh--------hhhhh-----
Q 035707 531 -----------------------------------------AIETYVNLLAVLQFRKKSFSA--------GKNLV----- 556 (713)
Q Consensus 531 -----------------------------------------A~~~~~~~l~~~~~~~~~~~~--------~~~~~----- 556 (713)
|+..++.++...+..++.... ...+.
T Consensus 229 ~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~ 308 (822)
T PRK14574 229 NPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQT 308 (822)
T ss_pred CccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhH
Confidence 444444444433222211000 00000
Q ss_pred -------hhcccCC----------------------------------------CccHHHHHHHHHHHHHHCCCHHHHHH
Q 035707 557 -------KNRQNHD----------------------------------------RSLEMETWHDLANVYTSLSQWRDAEV 589 (713)
Q Consensus 557 -------~~~~~~~----------------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~ 589 (713)
....... .+.+......|...|...+++++|..
T Consensus 309 ~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~ 388 (822)
T PRK14574 309 ADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQ 388 (822)
T ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHH
Confidence 0000000 11122223344455555555555555
Q ss_pred HHHHHHhcCC---------------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCCh
Q 035707 590 CLSKSKAINP---------------YSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESM 654 (713)
Q Consensus 590 ~~~~al~~~p---------------~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l 654 (713)
++++..+..| +-......++.++...|++.+|.+.+++.+...|.++..+..+|.++...|.+.
T Consensus 389 ~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~- 467 (822)
T PRK14574 389 FAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPR- 467 (822)
T ss_pred HHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH-
Confidence 5555554322 112334455555666666666666666666666666666666666666666665
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCCC
Q 035707 655 ATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALLEESAP 708 (713)
Q Consensus 655 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~~ 708 (713)
+|+..++.+..++|++..+...+|.++..+|+ +.+|.....++++..|+++
T Consensus 468 -~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e--~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 468 -KAEQELKAVESLAPRSLILERAQAETAMALQE--WHQMELLTDDVISRSPEDI 518 (822)
T ss_pred -HHHHHHHHHhhhCCccHHHHHHHHHHHHhhhh--HHHHHHHHHHHHhhCCCch
Confidence 66666666666666666666666666666666 6666666666666666655
No 45
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.87 E-value=6.1e-22 Score=199.47 Aligned_cols=264 Identities=19% Similarity=0.168 Sum_probs=123.9
Q ss_pred HHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHH
Q 035707 400 LLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTM-RERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKG 478 (713)
Q Consensus 400 ~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 478 (713)
.++.++ .+.|++++|++++.+.+... .|+++..|..+|.+....++++.|+..|++++..++.++ ..
T Consensus 13 ~~A~~~-----------~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~-~~ 80 (280)
T PF13429_consen 13 RLARLL-----------YQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANP-QD 80 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccc-----------cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence 457777 78899999999997655255 588999999999999999999999999999999999887 88
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 035707 479 YLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKN 558 (713)
Q Consensus 479 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 558 (713)
+..++.+ ...+++++|..+++++.+..+ ++..+...+.++...++++++...++++....+
T Consensus 81 ~~~l~~l-~~~~~~~~A~~~~~~~~~~~~---~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~--------------- 141 (280)
T PF13429_consen 81 YERLIQL-LQDGDPEEALKLAEKAYERDG---DPRYLLSALQLYYRLGDYDEAEELLEKLEELPA--------------- 141 (280)
T ss_dssp -----------------------------------------H-HHHTT-HHHHHHHHHHHHH-T----------------
T ss_pred ccccccc-ccccccccccccccccccccc---ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC---------------
Confidence 8888888 799999999999999987764 455667788889999999999999999875421
Q ss_pred cccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 035707 559 RQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPS 638 (713)
Q Consensus 559 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 638 (713)
.+.++..|..+|.++.+.|++++|+.+|+++++.+|+++.++..++.++...|+++++...+.......|+++..
T Consensus 142 -----~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~ 216 (280)
T PF13429_consen 142 -----APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDL 216 (280)
T ss_dssp -------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCH
T ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHH
Confidence 245588999999999999999999999999999999999999999999999999999999999888888888999
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcc
Q 035707 639 LVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALL 703 (713)
Q Consensus 639 ~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l 703 (713)
+..+|.++...|+++ +|+.+|+++++.+|+++..+..+|.++...|+ .++|..++++++..
T Consensus 217 ~~~la~~~~~lg~~~--~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~--~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 217 WDALAAAYLQLGRYE--EALEYLEKALKLNPDDPLWLLAYADALEQAGR--KDEALRLRRQALRL 277 (280)
T ss_dssp CHHHHHHHHHHT-HH--HHHHHHHHHHHHSTT-HHHHHHHHHHHT--------------------
T ss_pred HHHHHHHhccccccc--cccccccccccccccccccccccccccccccc--cccccccccccccc
Confidence 999999999999997 99999999999999999999999999999999 99999999998864
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.86 E-value=5e-19 Score=187.45 Aligned_cols=305 Identities=10% Similarity=-0.045 Sum_probs=250.9
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhh
Q 035707 357 ELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTM 436 (713)
Q Consensus 357 ~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 436 (713)
..+..|.+.+..|++. .|.+.+.++.+ ..|... ..+...|.++ .+.|+++.|..+|.++. +.
T Consensus 86 ~~~~~glla~~~g~~~-~A~~~l~~~~~-~~~~~~----~~~llaA~aa-----------~~~g~~~~A~~~l~~a~-~~ 147 (409)
T TIGR00540 86 KQTEEALLKLAEGDYA-KAEKLIAKNAD-HAAEPV----LNLIKAAEAA-----------QQRGDEARANQHLEEAA-EL 147 (409)
T ss_pred HHHHHHHHHHhCCCHH-HHHHHHHHHhh-cCCCCH----HHHHHHHHHH-----------HHCCCHHHHHHHHHHHH-Hh
Confidence 4466777889999999 99999999988 566655 7777788888 78899999999999999 88
Q ss_pred CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC-CcH-H
Q 035707 437 RERDP-YIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKW-DQG-E 513 (713)
Q Consensus 437 ~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~-~ 513 (713)
.|++. .+....+.++...|++++|...++++++..|+++ .++..++.++...|++++|...+.+..+..... ... .
T Consensus 148 ~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~-~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~ 226 (409)
T TIGR00540 148 AGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHK-EVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFAD 226 (409)
T ss_pred CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 88875 4666679999999999999999999999999999 999999999999999999999999999874311 111 1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 035707 514 LLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSK 593 (713)
Q Consensus 514 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 593 (713)
+......-....+..+++.+.+.++....|.. .+.++..+..++..+...|++++|...+++
T Consensus 227 l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~------------------~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~ 288 (409)
T TIGR00540 227 LEQKAEIGLLDEAMADEGIDGLLNWWKNQPRH------------------RRHNIALKIALAEHLIDCDDHDSAQEIIFD 288 (409)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHH------------------HhCCHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 11122222244455566667788877776532 234589999999999999999999999999
Q ss_pred HHhcCCCChhHH--HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHhcCCChHHHHHHHH--HHHhh
Q 035707 594 SKAINPYSASGW--HSTGLLYEAKGLQQEALVSFRKALDAEPNHV--PSLVSIARVLRQIGGESMATIRCFLT--DALRL 667 (713)
Q Consensus 594 al~~~p~~~~~~--~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~l~~A~~~~~--~al~~ 667 (713)
+++..|++.... ..........++.+.+++.++++++..|+++ ..+..+|+++.+.|+++ +|.++|+ .+++.
T Consensus 289 ~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~--~A~~~le~a~a~~~ 366 (409)
T TIGR00540 289 GLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFI--EAADAFKNVAACKE 366 (409)
T ss_pred HHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHH--HHHHHHHHhHHhhc
Confidence 999999887532 2233334446888999999999999999999 88999999999999997 9999999 57788
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcc
Q 035707 668 DRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALL 703 (713)
Q Consensus 668 ~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l 703 (713)
.|++.. +..+|.++.+.|+ .++|.++|++++..
T Consensus 367 ~p~~~~-~~~La~ll~~~g~--~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 367 QLDAND-LAMAADAFDQAGD--KAEAAAMRQDSLGL 399 (409)
T ss_pred CCCHHH-HHHHHHHHHHcCC--HHHHHHHHHHHHHH
Confidence 887655 5699999999999 99999999999764
No 47
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.86 E-value=1.1e-18 Score=184.58 Aligned_cols=351 Identities=15% Similarity=0.067 Sum_probs=263.2
Q ss_pred HHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcc
Q 035707 310 FALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICAENKVCIEEGITYARKALSMLQGK 389 (713)
Q Consensus 310 ~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~ 389 (713)
+.+...|++++|...+.++++. +|.++.++..+|.++-++|+.. ++....-.|-. ++|+
T Consensus 147 N~lfarg~~eeA~~i~~EvIkq-------------------dp~~~~ay~tL~~IyEqrGd~e-K~l~~~llAAH-L~p~ 205 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQ-------------------DPRNPIAYYTLGEIYEQRGDIE-KALNFWLLAAH-LNPK 205 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHh-------------------CccchhhHHHHHHHHHHcccHH-HHHHHHHHHHh-cCCC
Confidence 3455569999999999888874 6788888888888888999888 88888877777 7888
Q ss_pred CcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 035707 390 CRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLN 469 (713)
Q Consensus 390 ~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 469 (713)
+. .-|..++... ...|++.+|.-+|.+|+ +.+|.+....+..+.+|.+.|+...|...|.+++.
T Consensus 206 d~----e~W~~ladls-----------~~~~~i~qA~~cy~rAI-~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~ 269 (895)
T KOG2076|consen 206 DY----ELWKRLADLS-----------EQLGNINQARYCYSRAI-QANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQ 269 (895)
T ss_pred Ch----HHHHHHHHHH-----------HhcccHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHh
Confidence 88 8888888888 78888899999999999 99999988899999999999999999999999998
Q ss_pred hhcCCc----hHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh-h
Q 035707 470 LEARSN----VKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQ-F 544 (713)
Q Consensus 470 ~~p~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~ 544 (713)
..|... .......+..+...++-+.|++.++.++.........+.+..++.++....+++.|............ +
T Consensus 270 ~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~ 349 (895)
T KOG2076|consen 270 LDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEK 349 (895)
T ss_pred hCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCC
Confidence 888321 02333456677777777888888888888543223445667888888888888888877766554111 1
Q ss_pred hhhhhhh-----hhhhhhhcccCCCccHHHH-HHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHHcCC
Q 035707 545 RKKSFSA-----GKNLVKNRQNHDRSLEMET-WHDLANVYTSLSQWRDAEVCLSKSKAINP-YSASGWHSTGLLYEAKGL 617 (713)
Q Consensus 545 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~ 617 (713)
++..+.. .....-.....+.+.+..+ ...++.+..+.++..+++..+..--...| +++..+..++.++...|+
T Consensus 350 d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~ 429 (895)
T KOG2076|consen 350 DDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGK 429 (895)
T ss_pred ChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhccc
Confidence 1111100 0000001122222333333 55566666666666666665544333223 357788999999999999
Q ss_pred HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 035707 618 QQEALVSFRKALDAEP-NHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVEC 696 (713)
Q Consensus 618 ~~eA~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~ 696 (713)
+.+|+.+|..+....+ ++...|..+|.+|..+|.++ +|+.+|++++...|++.++...|+.++..+|+ .++|.+.
T Consensus 430 ~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e--~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~--~EkalEt 505 (895)
T KOG2076|consen 430 YKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE--EAIEFYEKVLILAPDNLDARITLASLYQQLGN--HEKALET 505 (895)
T ss_pred HHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH--HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCC--HHHHHHH
Confidence 9999999998887665 34678999999999999997 99999999999999999999999999999999 9999998
Q ss_pred HHHHH
Q 035707 697 FEAAA 701 (713)
Q Consensus 697 ~~~a~ 701 (713)
++...
T Consensus 506 L~~~~ 510 (895)
T KOG2076|consen 506 LEQII 510 (895)
T ss_pred Hhccc
Confidence 88766
No 48
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.86 E-value=3.7e-21 Score=193.78 Aligned_cols=267 Identities=18% Similarity=0.167 Sum_probs=124.4
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhh-hccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHh
Q 035707 357 ELLVASKICAENKVCIEEGITYARKALSML-QGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKT 435 (713)
Q Consensus 357 ~~~~~a~~~~~~g~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 435 (713)
..+.+|.+++..|++. +|++.+.+.+... +|.+. ..+..+|.+. ...+++++|+..|++.+ .
T Consensus 10 ~~l~~A~~~~~~~~~~-~Al~~L~~~~~~~~~~~~~----~~~~~~a~La-----------~~~~~~~~A~~ay~~l~-~ 72 (280)
T PF13429_consen 10 EALRLARLLYQRGDYE-KALEVLKKAAQKIAPPDDP----EYWRLLADLA-----------WSLGDYDEAIEAYEKLL-A 72 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccc-ccccccccccccccccccc----cccccccccc-----------ccccccccccccccccc-c
Confidence 3346699999999999 9999997766535 57777 8888899888 78889999999999999 9
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHH
Q 035707 436 MRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELL 515 (713)
Q Consensus 436 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 515 (713)
.++.++..+..++.. ...+++++|+.++++..+..++ + ..+.....++...++++++...++++....+.+.+..++
T Consensus 73 ~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~-~-~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 149 (280)
T PF13429_consen 73 SDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGD-P-RYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFW 149 (280)
T ss_dssp ------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHH
T ss_pred ccccccccccccccc-cccccccccccccccccccccc-c-chhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHH
Confidence 999988888888888 7999999999999999887654 4 677788889999999999999999988765333678899
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 035707 516 RTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSK 595 (713)
Q Consensus 516 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 595 (713)
..+|.++...|++++|+..|+++++.+|++ ..++..++.++...|+.+++...++...
T Consensus 150 ~~~a~~~~~~G~~~~A~~~~~~al~~~P~~----------------------~~~~~~l~~~li~~~~~~~~~~~l~~~~ 207 (280)
T PF13429_consen 150 LALAEIYEQLGDPDKALRDYRKALELDPDD----------------------PDARNALAWLLIDMGDYDEAREALKRLL 207 (280)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHH-TT-----------------------HHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----------------------HHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 999999999999999999999999998765 8889999999999999999999999998
Q ss_pred hcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 035707 596 AINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRL 667 (713)
Q Consensus 596 ~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~ 667 (713)
...|.++..|..+|.++...|++++|+.+|++++..+|+++..+..+|.++...|+.+ +|..+++++++.
T Consensus 208 ~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~--~A~~~~~~~~~~ 277 (280)
T PF13429_consen 208 KAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKD--EALRLRRQALRL 277 (280)
T ss_dssp HH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--------------------
T ss_pred HHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccc--cccccccccccc
Confidence 8889999999999999999999999999999999999999999999999999999998 999999888753
No 49
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.3e-18 Score=174.47 Aligned_cols=342 Identities=16% Similarity=0.106 Sum_probs=257.8
Q ss_pred HHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhh
Q 035707 308 LSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICAENKVCIEEGITYARKALSMLQ 387 (713)
Q Consensus 308 l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~ 387 (713)
-+.+....|+++.|...|-+++.. +|.+...+......+...|++. +|++-..+.++ +.
T Consensus 8 kgnaa~s~~d~~~ai~~~t~ai~l-------------------~p~nhvlySnrsaa~a~~~~~~-~al~da~k~~~-l~ 66 (539)
T KOG0548|consen 8 KGNAAFSSGDFETAIRLFTEAIML-------------------SPTNHVLYSNRSAAYASLGSYE-KALKDATKTRR-LN 66 (539)
T ss_pred HHHhhcccccHHHHHHHHHHHHcc-------------------CCCccchhcchHHHHHHHhhHH-HHHHHHHHHHh-cC
Confidence 456777889999999999988774 4666666666777778888888 88888888888 78
Q ss_pred ccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH----------
Q 035707 388 GKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKL---------- 457 (713)
Q Consensus 388 ~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~---------- 457 (713)
|.-+ .+|..+|..+ .-.|+|++|+..|.+.+ ..+|+|......++.++......
T Consensus 67 p~w~----kgy~r~Gaa~-----------~~lg~~~eA~~ay~~GL-~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~ 130 (539)
T KOG0548|consen 67 PDWA----KGYSRKGAAL-----------FGLGDYEEAILAYSEGL-EKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFH 130 (539)
T ss_pred Cchh----hHHHHhHHHH-----------HhcccHHHHHHHHHHHh-hcCCchHHHHHhHHHhhhHHHHhhhhccCcHHH
Confidence 8777 8888888888 77888888888888888 88888888887777776222000
Q ss_pred -----------HHHHHHHHHHHhhhcCCc---------------------------------------------------
Q 035707 458 -----------DVALYYAKKLLNLEARSN--------------------------------------------------- 475 (713)
Q Consensus 458 -----------~~A~~~~~~~l~~~p~~~--------------------------------------------------- 475 (713)
-..-..|...++..+.++
T Consensus 131 ~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 210 (539)
T KOG0548|consen 131 EKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPI 210 (539)
T ss_pred HHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCc
Confidence 000111111111100000
Q ss_pred -------------hHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 035707 476 -------------VKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVL 542 (713)
Q Consensus 476 -------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 542 (713)
......+|.......++..|++.|..+++++ .+...+.+.+.+|...|.+.+.+.....+++..
T Consensus 211 ~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g 287 (539)
T KOG0548|consen 211 IEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVG 287 (539)
T ss_pred cchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh
Confidence 0124456777777778888888888888876 355667777888888888888777777766653
Q ss_pred hhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------------------------
Q 035707 543 QFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAIN------------------------ 598 (713)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------------------------ 598 (713)
...... ......+...+|..|...++++.|+.+|++++...
T Consensus 288 re~rad---------------~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~ 352 (539)
T KOG0548|consen 288 RELRAD---------------YKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAY 352 (539)
T ss_pred HHHHHH---------------HHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 321110 11124445557888889999999999999987543
Q ss_pred --CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHH
Q 035707 599 --PYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWY 676 (713)
Q Consensus 599 --p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~ 676 (713)
|.-..--...|..++..|+|..|+..|.+++..+|+++..+.+.|.+|.++|.+. .|+...+.+++++|+...+|.
T Consensus 353 ~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~--~aL~Da~~~ieL~p~~~kgy~ 430 (539)
T KOG0548|consen 353 INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYP--EALKDAKKCIELDPNFIKAYL 430 (539)
T ss_pred hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHH--HHHHHHHHHHhcCchHHHHHH
Confidence 2222334456888999999999999999999999999999999999999999997 999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHccccCCC
Q 035707 677 NLGLLYKTYAGASALEAVECFEAAALLEESAP 708 (713)
Q Consensus 677 ~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~~ 708 (713)
..|.++..+.+ |++|.++|+++++++|++.
T Consensus 431 RKg~al~~mk~--ydkAleay~eale~dp~~~ 460 (539)
T KOG0548|consen 431 RKGAALRAMKE--YDKALEAYQEALELDPSNA 460 (539)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHhcCchhH
Confidence 99999999999 9999999999999999864
No 50
>PRK12370 invasion protein regulator; Provisional
Probab=99.85 E-value=3.2e-19 Score=196.03 Aligned_cols=251 Identities=12% Similarity=-0.045 Sum_probs=216.3
Q ss_pred hcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcC
Q 035707 420 LKQSQALVALETAEKTMRERDPYIIYHLCLENAEQ---------RKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQK 490 (713)
Q Consensus 420 ~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g 490 (713)
+.+++|+..|++++ .++|+++.++..+|.++... +++++|+..++++++++|+++ .++..+|.++...|
T Consensus 275 ~~~~~A~~~~~~Al-~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~-~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCV-NMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNP-QALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHH-hcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcc
Confidence 56789999999999 99999999999999887643 348999999999999999999 99999999999999
Q ss_pred CHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHH
Q 035707 491 QFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMET 570 (713)
Q Consensus 491 ~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (713)
++++|+..|+++++.+| ++..+++.+|.++...|++++|+..++++++++|.+ +..
T Consensus 353 ~~~~A~~~~~~Al~l~P--~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~----------------------~~~ 408 (553)
T PRK12370 353 EYIVGSLLFKQANLLSP--ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR----------------------AAA 408 (553)
T ss_pred CHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----------------------hhh
Confidence 99999999999999999 789999999999999999999999999999998754 455
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 035707 571 WHDLANVYTSLSQWRDAEVCLSKSKAIN-PYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQI 649 (713)
Q Consensus 571 ~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 649 (713)
+..++.++...|++++|+..+++++... |+++..+..+|.++...|++++|...+.+.....|.+..++..++..|...
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence 5566667888999999999999999875 778889999999999999999999999999999999999999999999988
Q ss_pred cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcc
Q 035707 650 GGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALL 703 (713)
Q Consensus 650 g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l 703 (713)
|+ +|...+++.++..-..+.-...+..+|.-.|+ .+.+..+ +++.+.
T Consensus 489 g~----~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~-~~~~~~ 535 (553)
T PRK12370 489 SE----RALPTIREFLESEQRIDNNPGLLPLVLVAHGE--AIAEKMW-NKFKNE 535 (553)
T ss_pred HH----HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhh--hHHHHHH-HHhhcc
Confidence 85 57776666655432222222337888888898 7777777 766654
No 51
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.8e-17 Score=158.79 Aligned_cols=289 Identities=17% Similarity=0.093 Sum_probs=247.7
Q ss_pred CCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHH
Q 035707 351 NSDCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALE 430 (713)
Q Consensus 351 ~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 430 (713)
-|+++..+..+|++++..|++. +|+..|+++.. ++|... .+.-..|..+ .+.|+++.-...-.
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~-~a~~~Fe~~~~-~dpy~i----~~MD~Ya~LL-----------~~eg~~e~~~~L~~ 290 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYF-QAEDIFSSTLC-ANPDNV----EAMDLYAVLL-----------GQEGGCEQDSALMD 290 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCch-HHHHHHHHHhh-CChhhh----hhHHHHHHHH-----------HhccCHhhHHHHHH
Confidence 4789999999999999999999 99999999998 888877 7777777777 56667777666666
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCC
Q 035707 431 TAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWD 510 (713)
Q Consensus 431 ~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 510 (713)
..+ ..+.....-|+--+...+..+++..|+.+.+++++.+|.+. .++...|.++...|+.++|.-.|+.+..+.| .
T Consensus 291 ~Lf-~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~-~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap--~ 366 (564)
T KOG1174|consen 291 YLF-AKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNH-EALILKGRLLIALERHTQAVIAFRTAQMLAP--Y 366 (564)
T ss_pred HHH-hhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccc-hHHHhccHHHHhccchHHHHHHHHHHHhcch--h
Confidence 666 66666777788888999999999999999999999999999 9999999999999999999999999999998 7
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHH-HHHHH-CCCHHHHH
Q 035707 511 QGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLA-NVYTS-LSQWRDAE 588 (713)
Q Consensus 511 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~~~~-~g~~~~A~ 588 (713)
..+.|..+..+|...|++.+|.-.-+.++...|.+ +.++..+| .++.. -.--++|.
T Consensus 367 rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~s----------------------A~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 367 RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNS----------------------ARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcc----------------------hhhhhhhcceeeccCchhHHHHH
Confidence 89999999999999999999999999999887765 56666664 44333 23357899
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhC
Q 035707 589 VCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLD 668 (713)
Q Consensus 589 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~ 668 (713)
.++++++.+.|....+-..++.++...|.++.++..+++.+...|+. ..+..+|.++...+.++ +|..+|..|++++
T Consensus 425 kf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q--~am~~y~~ALr~d 501 (564)
T KOG1174|consen 425 KFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQ--KAMEYYYKALRQD 501 (564)
T ss_pred HHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHH--HHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999888774 56888999999999887 9999999999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q 035707 669 RTNTTAWYNLGLLYKTY 685 (713)
Q Consensus 669 p~~~~~~~~lg~~~~~~ 685 (713)
|++..+.-.|-..-...
T Consensus 502 P~~~~sl~Gl~~lEK~~ 518 (564)
T KOG1174|consen 502 PKSKRTLRGLRLLEKSD 518 (564)
T ss_pred ccchHHHHHHHHHHhcc
Confidence 99887776665554443
No 52
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.83 E-value=5.1e-19 Score=165.72 Aligned_cols=238 Identities=18% Similarity=0.090 Sum_probs=193.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHH
Q 035707 445 YHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIA 524 (713)
Q Consensus 445 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~ 524 (713)
..+|.||.+.|.+.+|.+.++..++..|. + +++..|+.+|.+..+...|+..+...++..| .+...+...++++..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~-~-dTfllLskvY~ridQP~~AL~~~~~gld~fP--~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPH-P-DTFLLLSKVYQRIDQPERALLVIGEGLDSFP--FDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCc-h-hHHHHHHHHHHHhccHHHHHHHHhhhhhcCC--chhhhhhhhHHHHHH
Confidence 56888888888888888888888877664 4 7888888888888888888888888888888 677778888888888
Q ss_pred hCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhH
Q 035707 525 QGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASG 604 (713)
Q Consensus 525 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 604 (713)
.+++++|+++|+.+++.+|.+ .++...+|.-|+-.++.+-|+.+|++.++..-.+++.
T Consensus 303 m~~~~~a~~lYk~vlk~~~~n----------------------vEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speL 360 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPIN----------------------VEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPEL 360 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCcc----------------------ceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHH
Confidence 888888888888888886654 6666667777788888888888888888888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 035707 605 WHSTGLLYEAKGLQQEALVSFRKALDAEP---NHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLL 681 (713)
Q Consensus 605 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~ 681 (713)
+.++|.++...+++|-++..|++++.... .-.++|+++|.+....|++. -|..+|+-++..+|++.+++.+||.+
T Consensus 361 f~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~n--lA~rcfrlaL~~d~~h~ealnNLavL 438 (478)
T KOG1129|consen 361 FCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFN--LAKRCFRLALTSDAQHGEALNNLAVL 438 (478)
T ss_pred HhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchH--HHHHHHHHHhccCcchHHHHHhHHHH
Confidence 88888888888888888888888887543 23578888888888888887 78888888888888888888888888
Q ss_pred HHHhCCCCHHHHHHHHHHHHccccCCCCCCC
Q 035707 682 YKTYAGASALEAVECFEAAALLEESAPVEPF 712 (713)
Q Consensus 682 ~~~~g~~~~~~A~~~~~~a~~l~p~~~~~~f 712 (713)
-.+.|+ .++|..++..|-.+.|+-....|
T Consensus 439 ~~r~G~--i~~Arsll~~A~s~~P~m~E~~~ 467 (478)
T KOG1129|consen 439 AARSGD--ILGARSLLNAAKSVMPDMAEVTT 467 (478)
T ss_pred HhhcCc--hHHHHHHHHHhhhhCcccccccc
Confidence 888888 88888888888888887655443
No 53
>PRK12370 invasion protein regulator; Provisional
Probab=99.83 E-value=2.8e-18 Score=188.58 Aligned_cols=260 Identities=13% Similarity=0.002 Sum_probs=214.9
Q ss_pred CChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 035707 370 VCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCL 449 (713)
Q Consensus 370 ~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~ 449 (713)
.+. +|+.+|+++++ .+|.+. .++..+|.+|...+.... ....+++++|+..+++++ .++|+++.++..+|.
T Consensus 276 ~~~-~A~~~~~~Al~-ldP~~a----~a~~~La~~~~~~~~~g~--~~~~~~~~~A~~~~~~Al-~ldP~~~~a~~~lg~ 346 (553)
T PRK12370 276 SLQ-QALKLLTQCVN-MSPNSI----APYCALAECYLSMAQMGI--FDKQNAMIKAKEHAIKAT-ELDHNNPQALGLLGL 346 (553)
T ss_pred HHH-HHHHHHHHHHh-cCCccH----HHHHHHHHHHHHHHHcCC--cccchHHHHHHHHHHHHH-hcCCCCHHHHHHHHH
Confidence 456 99999999999 899988 899999998854433111 023456899999999999 999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHH
Q 035707 450 ENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLK 529 (713)
Q Consensus 450 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~ 529 (713)
++...|++++|+..|+++++++|+++ .+++.+|.++...|++++|+..++++++.+| .+...+..++.++...|+++
T Consensus 347 ~~~~~g~~~~A~~~~~~Al~l~P~~~-~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P--~~~~~~~~~~~~~~~~g~~e 423 (553)
T PRK12370 347 INTIHSEYIVGSLLFKQANLLSPISA-DIKYYYGWNLFMAGQLEEALQTINECLKLDP--TRAAAGITKLWITYYHTGID 423 (553)
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CChhhHHHHHHHHHhccCHH
Confidence 99999999999999999999999999 9999999999999999999999999999999 55666666677788899999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 035707 530 NAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTG 609 (713)
Q Consensus 530 ~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 609 (713)
+|+..+++++...| |..+..+..+|.++...|++++|...++++....|.+..++..++
T Consensus 424 eA~~~~~~~l~~~~---------------------p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~ 482 (553)
T PRK12370 424 DAIRLGDELRSQHL---------------------QDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLY 482 (553)
T ss_pred HHHHHHHHHHHhcc---------------------ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 99999999988742 334778899999999999999999999999999998888999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 035707 610 LLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRL 667 (713)
Q Consensus 610 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~ 667 (713)
..|...| ++|...+++.++..............++.-.|+.+ .+..+ +++.+.
T Consensus 483 ~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~-~~~~~~ 535 (553)
T PRK12370 483 AEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAI--AEKMW-NKFKNE 535 (553)
T ss_pred HHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhH--HHHHH-HHhhcc
Confidence 9998888 47777777766543222222223777788888875 44444 655543
No 54
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.82 E-value=3.6e-18 Score=172.14 Aligned_cols=237 Identities=15% Similarity=0.054 Sum_probs=183.2
Q ss_pred CChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 035707 370 VCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCL 449 (713)
Q Consensus 370 ~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~ 449 (713)
..+ .++..+.+++. ..+.++...+..++.+|.+| ...|++++|+..|++++ +++|+++.+|+.+|.
T Consensus 41 ~~e-~~i~~~~~~l~-~~~~~~~~~a~~~~~~g~~~-----------~~~g~~~~A~~~~~~Al-~l~P~~~~a~~~lg~ 106 (296)
T PRK11189 41 QQE-VILARLNQILA-SRDLTDEERAQLHYERGVLY-----------DSLGLRALARNDFSQAL-ALRPDMADAYNYLGI 106 (296)
T ss_pred HHH-HHHHHHHHHHc-cccCCcHhhHHHHHHHHHHH-----------HHCCCHHHHHHHHHHHH-HcCCCCHHHHHHHHH
Confidence 445 78888888887 44444444458899999999 78899999999999999 999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHH
Q 035707 450 ENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLK 529 (713)
Q Consensus 450 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~ 529 (713)
++...|++++|+..|+++++++|++. .+|..+|.++...|++++|+..++++++.+| +++.. .....+....++++
T Consensus 107 ~~~~~g~~~~A~~~~~~Al~l~P~~~-~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P--~~~~~-~~~~~l~~~~~~~~ 182 (296)
T PRK11189 107 YLTQAGNFDAAYEAFDSVLELDPTYN-YAYLNRGIALYYGGRYELAQDDLLAFYQDDP--NDPYR-ALWLYLAESKLDPK 182 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHH-HHHHHHHHccCCHH
Confidence 99999999999999999999999998 9999999999999999999999999999998 45421 11223345678899
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHH-------HhcCCCCh
Q 035707 530 NAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKS-------KAINPYSA 602 (713)
Q Consensus 530 ~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-------l~~~p~~~ 602 (713)
+|+..|.+.....+ ...|. .+.++...|++..+ ..++.+ .++.|..+
T Consensus 183 ~A~~~l~~~~~~~~------------------------~~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ 236 (296)
T PRK11189 183 QAKENLKQRYEKLD------------------------KEQWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLC 236 (296)
T ss_pred HHHHHHHHHHhhCC------------------------ccccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHH
Confidence 99999987664422 11222 34555556665443 233333 34556677
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhc
Q 035707 603 SGWHSTGLLYEAKGLQQEALVSFRKALDAEP-NHVPSLVSIARVLRQIG 650 (713)
Q Consensus 603 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~la~~~~~~g 650 (713)
.+|+.+|.++...|++++|+.+|+++++.+| ++++..+.+..+....+
T Consensus 237 ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~ 285 (296)
T PRK11189 237 ETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQ 285 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999986 66666666655554433
No 55
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.82 E-value=3.5e-17 Score=172.40 Aligned_cols=302 Identities=9% Similarity=-0.018 Sum_probs=234.1
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhh
Q 035707 357 ELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTM 436 (713)
Q Consensus 357 ~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 436 (713)
..+..|.+....|++. +|.+...+.-+ . .+++ ...+...+... .+.|+++.|..+|.++. +.
T Consensus 86 ~~~~~gl~a~~eGd~~-~A~k~l~~~~~-~-~~~p---~l~~llaA~aA-----------~~~g~~~~A~~~l~~A~-~~ 147 (398)
T PRK10747 86 KQTEQALLKLAEGDYQ-QVEKLMTRNAD-H-AEQP---VVNYLLAAEAA-----------QQRGDEARANQHLERAA-EL 147 (398)
T ss_pred HHHHHHHHHHhCCCHH-HHHHHHHHHHh-c-ccch---HHHHHHHHHHH-----------HHCCCHHHHHHHHHHHH-hc
Confidence 3456677778899999 99977776555 2 2223 13344445554 68899999999999999 98
Q ss_pred CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHH
Q 035707 437 RERDPYI-IYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELL 515 (713)
Q Consensus 437 ~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 515 (713)
+|++... ....+.++...|++++|+..++++.+.+|+++ .++..++.++...|++++|+..+.+..+..+.. ....-
T Consensus 148 ~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~-~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~-~~~~~ 225 (398)
T PRK10747 148 ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHP-EVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGD-EEHRA 225 (398)
T ss_pred CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCC-HHHHH
Confidence 8887543 34558999999999999999999999999999 999999999999999999999999988876521 11111
Q ss_pred HHHHHHH---HHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 035707 516 RTKAKLQ---IAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLS 592 (713)
Q Consensus 516 ~~la~~~---~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 592 (713)
......+ ..........+.+.+.++..|.. .+.++.++..++..+...|+.++|...++
T Consensus 226 ~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~------------------~~~~~~~~~~~A~~l~~~g~~~~A~~~L~ 287 (398)
T PRK10747 226 MLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK------------------TRHQVALQVAMAEHLIECDDHDTAQQIIL 287 (398)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH------------------HhCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 1111111 11111122234444444443322 24558999999999999999999999999
Q ss_pred HHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCH
Q 035707 593 KSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNT 672 (713)
Q Consensus 593 ~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~ 672 (713)
++++. |.++......+.+ ..++.+++++..++.++.+|+++..+..+|.++...++++ +|+.+|+++++..|++.
T Consensus 288 ~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~--~A~~~le~al~~~P~~~ 362 (398)
T PRK10747 288 DGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQ--EASLAFRAALKQRPDAY 362 (398)
T ss_pred HHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhcCCCHH
Confidence 99995 4466555555544 4599999999999999999999999999999999999997 99999999999999864
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHccc
Q 035707 673 TAWYNLGLLYKTYAGASALEAVECFEAAALLE 704 (713)
Q Consensus 673 ~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~ 704 (713)
.+..++.++.+.|+ .++|..+|++++.+.
T Consensus 363 -~~~~La~~~~~~g~--~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 363 -DYAWLADALDRLHK--PEEAAAMRRDGLMLT 391 (398)
T ss_pred -HHHHHHHHHHHcCC--HHHHHHHHHHHHhhh
Confidence 46789999999999 999999999998864
No 56
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=8.6e-19 Score=164.19 Aligned_cols=238 Identities=18% Similarity=0.076 Sum_probs=219.6
Q ss_pred HHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHH
Q 035707 416 SKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADA 495 (713)
Q Consensus 416 ~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A 495 (713)
+.+.|.+.+|.+.|+.++ +..| .++.+..++.+|.+..+...|+..|.+.++..|.+. ......++++..++++++|
T Consensus 233 ylrLgm~r~AekqlqssL-~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~V-T~l~g~ARi~eam~~~~~a 309 (478)
T KOG1129|consen 233 YLRLGMPRRAEKQLQSSL-TQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDV-TYLLGQARIHEAMEQQEDA 309 (478)
T ss_pred HHHhcChhhhHHHHHHHh-hcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchh-hhhhhhHHHHHHHHhHHHH
Confidence 567899999999999999 6654 688999999999999999999999999999999998 8889999999999999999
Q ss_pred HHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHH
Q 035707 496 ESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLA 575 (713)
Q Consensus 496 ~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 575 (713)
.++|+.+++.+| .+.++...+|.-|...++++-|+.+|+++++..- ..++.+.++|
T Consensus 310 ~~lYk~vlk~~~--~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~----------------------~speLf~Nig 365 (478)
T KOG1129|consen 310 LQLYKLVLKLHP--INVEAIACIAVGYFYDNNPEMALRYYRRILQMGA----------------------QSPELFCNIG 365 (478)
T ss_pred HHHHHHHHhcCC--ccceeeeeeeeccccCCChHHHHHHHHHHHHhcC----------------------CChHHHhhHH
Confidence 999999999998 7889888999999999999999999999999843 3389999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC
Q 035707 576 NVYTSLSQWRDAEVCLSKSKAINPY---SASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGE 652 (713)
Q Consensus 576 ~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 652 (713)
.+++..++++-++.+|++++....+ -+++|+++|.+....|++.-|..+|+-++..+|++.++++++|.+-.+.|+.
T Consensus 366 LCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i 445 (478)
T KOG1129|consen 366 LCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDI 445 (478)
T ss_pred HHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCch
Confidence 9999999999999999999986542 3789999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 035707 653 SMATIRCFLTDALRLDRTNTTAWYNLGLLY 682 (713)
Q Consensus 653 ~l~~A~~~~~~al~~~p~~~~~~~~lg~~~ 682 (713)
+ +|..++..+-...|+-.+..++++.+-
T Consensus 446 ~--~Arsll~~A~s~~P~m~E~~~Nl~~~s 473 (478)
T KOG1129|consen 446 L--GARSLLNAAKSVMPDMAEVTTNLQFMS 473 (478)
T ss_pred H--HHHHHHHHhhhhCccccccccceeEEe
Confidence 7 999999999999999888888876543
No 57
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=3.9e-17 Score=163.97 Aligned_cols=390 Identities=14% Similarity=0.052 Sum_probs=290.2
Q ss_pred ccCCchhHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCC
Q 035707 273 FVPRNNIEEAVLLLLILLKKIVLGKIEWDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENS 352 (713)
Q Consensus 273 ~~~~~~~eeA~~ll~~~~~~~~l~~~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p 352 (713)
.+..++++.|+.++ ...+.-.|.+-.++..-..+|...|+|+.|.+--.+... ++|
T Consensus 12 a~s~~d~~~ai~~~-----t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~-------------------l~p 67 (539)
T KOG0548|consen 12 AFSSGDFETAIRLF-----TEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR-------------------LNP 67 (539)
T ss_pred hcccccHHHHHHHH-----HHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh-------------------cCC
Confidence 45668889999877 344566777778888889999999999998887666554 478
Q ss_pred CChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhccccccc----H-------------
Q 035707 353 DCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVS----D------------- 415 (713)
Q Consensus 353 ~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~----~------------- 415 (713)
+.+..+...|..+.-.|+++ +|+..|.+.++ .+|.+. .....|..++......... .
T Consensus 68 ~w~kgy~r~Gaa~~~lg~~~-eA~~ay~~GL~-~d~~n~----~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~ 141 (539)
T KOG0548|consen 68 DWAKGYSRKGAALFGLGDYE-EAILAYSEGLE-KDPSNK----QLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNY 141 (539)
T ss_pred chhhHHHHhHHHHHhcccHH-HHHHHHHHHhh-cCCchH----HHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhh
Confidence 99999999999999999999 99999999999 899988 6666666655221110000 0
Q ss_pred HH-----------------------HHhcHHHHHHHHHHHHH--------h-----hCCC------------C-------
Q 035707 416 SK-----------------------RILKQSQALVALETAEK--------T-----MRER------------D------- 440 (713)
Q Consensus 416 ~~-----------------------~~~~~~~A~~~~~~al~--------~-----~~p~------------~------- 440 (713)
+. ......+|.-.+..+-. . ..|. .
T Consensus 142 ~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k 221 (539)
T KOG0548|consen 142 SLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVK 221 (539)
T ss_pred hhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHH
Confidence 00 00001111111110000 0 0010 0
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC-----CcHH
Q 035707 441 --PYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKW-----DQGE 513 (713)
Q Consensus 441 --~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~ 513 (713)
......+|...++..++..|++.|..++.++ .+. ..+...+.++...|.+.+.+.....+++..... .-..
T Consensus 222 ~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~i-t~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak 299 (539)
T KOG0548|consen 222 EKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDI-TYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAK 299 (539)
T ss_pred HhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhh-HHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHH
Confidence 1234678999999999999999999999999 666 788899999999999999999999988876310 0112
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh-----hcccCCCccHHHHHHHHHHHHHHCCCHHHHH
Q 035707 514 LLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVK-----NRQNHDRSLEMETWHDLANVYTSLSQWRDAE 588 (713)
Q Consensus 514 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 588 (713)
....+|..+...++++.|+.+|.+++..... ++.........+ .......|.-..--..-|..++..|+|..|+
T Consensus 300 ~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av 378 (539)
T KOG0548|consen 300 ALARLGNAYTKREDYEGAIKYYQKALTEHRT-PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAV 378 (539)
T ss_pred HHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHH
Confidence 3344667888889999999999998876433 111111111111 1112223344555666799999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhC
Q 035707 589 VCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLD 668 (713)
Q Consensus 589 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~ 668 (713)
..|.+++..+|+++..|.+.|.+|...|.+..|+...+.+++++|+...+|..-|.++..+.+|+ +|...|+++++.+
T Consensus 379 ~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~yd--kAleay~eale~d 456 (539)
T KOG0548|consen 379 KHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYD--KALEAYQEALELD 456 (539)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 035707 669 RTNTTAWYNLGLLYKTYAGASALEAVECFEA 699 (713)
Q Consensus 669 p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~ 699 (713)
|++.++...+..++..+.. .....+.+++
T Consensus 457 p~~~e~~~~~~rc~~a~~~--~~~~ee~~~r 485 (539)
T KOG0548|consen 457 PSNAEAIDGYRRCVEAQRG--DETPEETKRR 485 (539)
T ss_pred chhHHHHHHHHHHHHHhhc--CCCHHHHHHh
Confidence 9999999888888886444 3444555555
No 58
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.80 E-value=1.8e-17 Score=149.07 Aligned_cols=208 Identities=17% Similarity=0.146 Sum_probs=188.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHH
Q 035707 442 YIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKL 521 (713)
Q Consensus 442 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~ 521 (713)
.+...||..|+..|++..|...++++++.+|++. .+|..++.+|...|+.+.|.+.|++++.+.| .+.+++++.|..
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~-~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p--~~GdVLNNYG~F 112 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY-LAHLVRAHYYQKLGENDLADESYRKALSLAP--NNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH-HHHHHHHHHHHHcCChhhHHHHHHHHHhcCC--CccchhhhhhHH
Confidence 4678899999999999999999999999999999 9999999999999999999999999999999 889999999999
Q ss_pred HHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Q 035707 522 QIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYS 601 (713)
Q Consensus 522 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 601 (713)
++.+|++++|...|++++.. | ..+..+.+|.++|.|..+.|+++.|...|+++++++|+.
T Consensus 113 LC~qg~~~eA~q~F~~Al~~-P-------------------~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~ 172 (250)
T COG3063 113 LCAQGRPEEAMQQFERALAD-P-------------------AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF 172 (250)
T ss_pred HHhCCChHHHHHHHHHHHhC-C-------------------CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC
Confidence 99999999999999999874 3 235558899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHH
Q 035707 602 ASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTA 674 (713)
Q Consensus 602 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~ 674 (713)
+.....++..++..|++-.|..++++.....+-..+.+.....+-...|+.+ .+-.+=.+..+..|...+.
T Consensus 173 ~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~--~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 173 PPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRA--AAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred ChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHH--HHHHHHHHHHHhCCCcHHH
Confidence 9999999999999999999999999998888878888888888888899986 6666666667778887654
No 59
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=1.3e-18 Score=175.87 Aligned_cols=240 Identities=17% Similarity=0.135 Sum_probs=185.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHH
Q 035707 445 YHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIA 524 (713)
Q Consensus 445 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~ 524 (713)
+..|..+++.|++.+|.-.|+.+++.+|.+. ++|..||.+....++-..|+..++++++++| ++..++..||..|..
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~ha-eAW~~LG~~qaENE~E~~ai~AL~rcl~LdP--~NleaLmaLAVSytN 365 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHA-EAWQKLGITQAENENEQNAISALRRCLELDP--TNLEALMALAVSYTN 365 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHH-HHHHHhhhHhhhccchHHHHHHHHHHHhcCC--ccHHHHHHHHHHHhh
Confidence 6788999999999999999999999999999 9999999999999999999999999999999 889999999999999
Q ss_pred hCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CCh
Q 035707 525 QGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINP--YSA 602 (713)
Q Consensus 525 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~ 602 (713)
.|.-.+|+.++.+-+...|...-.......... .......+... +..-.+.|-.+....| .++
T Consensus 366 eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~--~~~~s~~~~~~-------------l~~i~~~fLeaa~~~~~~~Dp 430 (579)
T KOG1125|consen 366 EGLQNQALKMLDKWIRNKPKYVHLVSAGENEDF--ENTKSFLDSSH-------------LAHIQELFLEAARQLPTKIDP 430 (579)
T ss_pred hhhHHHHHHHHHHHHHhCccchhccccCccccc--cCCcCCCCHHH-------------HHHHHHHHHHHHHhCCCCCCh
Confidence 999999999999998876643211100000000 00001111222 2223344444555555 577
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 035707 603 SGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLY 682 (713)
Q Consensus 603 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~ 682 (713)
++...||.+|...|+|++|+.+|+.||...|++...|+.||..+..-.+.. +|+..|++|+++.|+...++|+||..+
T Consensus 431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~--EAIsAY~rALqLqP~yVR~RyNlgIS~ 508 (579)
T KOG1125|consen 431 DVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSE--EAISAYNRALQLQPGYVRVRYNLGISC 508 (579)
T ss_pred hHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccH--HHHHHHHHHHhcCCCeeeeehhhhhhh
Confidence 888888888888888888888888888888888888888888888777775 888888888888888888888888888
Q ss_pred HHhCCCCHHHHHHHHHHHHccccC
Q 035707 683 KTYAGASALEAVECFEAAALLEES 706 (713)
Q Consensus 683 ~~~g~~~~~~A~~~~~~a~~l~p~ 706 (713)
..+|. |.+|..+|-.|+.+.+.
T Consensus 509 mNlG~--ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 509 MNLGA--YKEAVKHLLEALSMQRK 530 (579)
T ss_pred hhhhh--HHHHHHHHHHHHHhhhc
Confidence 88888 88888888888887665
No 60
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.80 E-value=1.2e-17 Score=168.22 Aligned_cols=238 Identities=13% Similarity=0.067 Sum_probs=181.9
Q ss_pred HHhcHHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHH
Q 035707 418 RILKQSQALVALETAEKTMRE----RDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFA 493 (713)
Q Consensus 418 ~~~~~~~A~~~~~~al~~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~ 493 (713)
..+..+.++..+.+++ ...| ..+..++.+|.+|...|++++|+..|+++++.+|+++ .+|..+|.++...|+++
T Consensus 38 ~~~~~e~~i~~~~~~l-~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~-~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 38 PTLQQEVILARLNQIL-ASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMA-DAYNYLGIYLTQAGNFD 115 (296)
T ss_pred CchHHHHHHHHHHHHH-ccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHCCCHH
Confidence 3477788999999998 7444 2366799999999999999999999999999999998 99999999999999999
Q ss_pred HHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHH
Q 035707 494 DAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHD 573 (713)
Q Consensus 494 ~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (713)
+|+..|+++++++| ++..++..+|.++...|++++|++.|+++++.+|++ + ....|.
T Consensus 116 ~A~~~~~~Al~l~P--~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~-------------------~-~~~~~~- 172 (296)
T PRK11189 116 AAYEAFDSVLELDP--TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPND-------------------P-YRALWL- 172 (296)
T ss_pred HHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------------------H-HHHHHH-
Confidence 99999999999998 778889999999999999999999999999987754 1 112222
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHH--HHHHH----HHHhcCCCCHHHHHHHHHHHH
Q 035707 574 LANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEA--LVSFR----KALDAEPNHVPSLVSIARVLR 647 (713)
Q Consensus 574 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA--~~~~~----~al~~~p~~~~~~~~la~~~~ 647 (713)
.+....+++++|+..|++.....+.. .|. .+.++...|+..++ +..+. ...++.|...++|+++|.++.
T Consensus 173 --~l~~~~~~~~~A~~~l~~~~~~~~~~--~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~ 247 (296)
T PRK11189 173 --YLAESKLDPKQAKENLKQRYEKLDKE--QWG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYL 247 (296)
T ss_pred --HHHHccCCHHHHHHHHHHHHhhCCcc--ccH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 23345778999999997766543322 222 34555556665443 32222 223556677789999999999
Q ss_pred HhcCCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhCC
Q 035707 648 QIGGESMATIRCFLTDALRLDR-TNTTAWYNLGLLYKTYAG 687 (713)
Q Consensus 648 ~~g~~~l~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~ 687 (713)
..|+++ +|+.+|+++++.+| +..+..+.+..+....++
T Consensus 248 ~~g~~~--~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 248 SLGDLD--EAAALFKLALANNVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred HCCCHH--HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhh
Confidence 999987 99999999999986 566666666665555444
No 61
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=1.2e-18 Score=176.29 Aligned_cols=256 Identities=17% Similarity=0.206 Sum_probs=214.2
Q ss_pred HHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHH
Q 035707 399 CLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKG 478 (713)
Q Consensus 399 ~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 478 (713)
+..|..+ .+.|+..+|.-.|+.++ +.+|.+.++|..||.+....++-..|+..++++++++|++. .+
T Consensus 289 f~eG~~l-----------m~nG~L~~A~LafEAAV-kqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nl-ea 355 (579)
T KOG1125|consen 289 FKEGCNL-----------MKNGDLSEAALAFEAAV-KQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNL-EA 355 (579)
T ss_pred HHHHHHH-----------HhcCCchHHHHHHHHHH-hhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccH-HH
Confidence 4567777 78899999999999999 99999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHH---------HHhCCHHHHHHHHHHHHHHHhhhhhhh
Q 035707 479 YLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQ---------IAQGRLKNAIETYVNLLAVLQFRKKSF 549 (713)
Q Consensus 479 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~---------~~~g~~~~A~~~~~~~l~~~~~~~~~~ 549 (713)
+..||..|...|.-.+|...+++.+...|.. . +...+..- .....+..-.+.|-.+....|.
T Consensus 356 LmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y--~--~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~----- 426 (579)
T KOG1125|consen 356 LMALAVSYTNEGLQNQALKMLDKWIRNKPKY--V--HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPT----- 426 (579)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhCccc--h--hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCC-----
Confidence 9999999999999999999999999887631 1 11000000 0001122223344444333321
Q ss_pred hhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 035707 550 SAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKAL 629 (713)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 629 (713)
..++++...||.+|...|+|++|+.||+.++...|.+...|+.||-.+....+..+|+..|++|+
T Consensus 427 ---------------~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL 491 (579)
T KOG1125|consen 427 ---------------KIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRAL 491 (579)
T ss_pred ---------------CCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHH
Confidence 25689999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC----------CHHHHHHHHHHHHHhCCCCHHHHHH
Q 035707 630 DAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRT----------NTTAWYNLGLLYKTYAGASALEAVE 695 (713)
Q Consensus 630 ~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~----------~~~~~~~lg~~~~~~g~~~~~~A~~ 695 (713)
++.|.++.+++++|..+..+|.|. +|..+|-.||.+.+. +..+|-+|=.++...++ .+-+..
T Consensus 492 qLqP~yVR~RyNlgIS~mNlG~yk--EA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~--~D~l~~ 563 (579)
T KOG1125|consen 492 QLQPGYVRVRYNLGISCMNLGAYK--EAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNR--SDLLQE 563 (579)
T ss_pred hcCCCeeeeehhhhhhhhhhhhHH--HHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCC--chHHHH
Confidence 999999999999999999999998 999999999987654 12588888888888888 664443
No 62
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.80 E-value=6.2e-17 Score=171.50 Aligned_cols=297 Identities=12% Similarity=-0.003 Sum_probs=238.3
Q ss_pred HHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhc
Q 035707 309 SFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICAENKVCIEEGITYARKALSMLQG 388 (713)
Q Consensus 309 ~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~ 388 (713)
|..-...|++..|.+.+.++.+. .|+....++..|.+....|++. .|..++.++.+ ..|
T Consensus 91 glla~~~g~~~~A~~~l~~~~~~-------------------~~~~~~~~llaA~aa~~~g~~~-~A~~~l~~a~~-~~p 149 (409)
T TIGR00540 91 ALLKLAEGDYAKAEKLIAKNADH-------------------AAEPVLNLIKAAEAAQQRGDEA-RANQHLEEAAE-LAG 149 (409)
T ss_pred HHHHHhCCCHHHHHHHHHHHhhc-------------------CCCCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHH-hCC
Confidence 34456789999999998887653 4667778888999999999999 99999999998 566
Q ss_pred cCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 035707 389 KCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLL 468 (713)
Q Consensus 389 ~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 468 (713)
.+. ..+....+.++ ...|++++|+..+++.. +..|+++.++..++.++...|++++|.+.+.+..
T Consensus 150 ~~~---l~~~~~~a~l~-----------l~~~~~~~Al~~l~~l~-~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~ 214 (409)
T TIGR00540 150 NDN---ILVEIARTRIL-----------LAQNELHAARHGVDKLL-EMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMA 214 (409)
T ss_pred cCc---hHHHHHHHHHH-----------HHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 654 02444457888 78899999999999999 9999999999999999999999999999999999
Q ss_pred hhhcCCchHHHH----HHHHHHHHcCCHHHHHHHHHHHhhccCCC--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 035707 469 NLEARSNVKGYL----LLARVLSAQKQFADAESVINDSLDQTGKW--DQGELLRTKAKLQIAQGRLKNAIETYVNLLAVL 542 (713)
Q Consensus 469 ~~~p~~~~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 542 (713)
+....++ .... ....-+...+..+++...+..+.+..|.. +++.++..++..+...|++++|.+.++++++..
T Consensus 215 k~~~~~~-~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~ 293 (409)
T TIGR00540 215 KAGLFDD-EEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL 293 (409)
T ss_pred HcCCCCH-HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Confidence 8755443 2221 12222234444555566777777776621 478899999999999999999999999999997
Q ss_pred hhhhhhhhhhhhhhhhcccCCCccHHHH--HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh--hHHHHHHHHHHHcCCH
Q 035707 543 QFRKKSFSAGKNLVKNRQNHDRSLEMET--WHDLANVYTSLSQWRDAEVCLSKSKAINPYSA--SGWHSTGLLYEAKGLQ 618 (713)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~ 618 (713)
|++ ... ...........++.+.++..++++++..|+++ .....+|.++...|++
T Consensus 294 pd~----------------------~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~ 351 (409)
T TIGR00540 294 GDD----------------------RAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEF 351 (409)
T ss_pred CCc----------------------ccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccH
Confidence 754 211 12233333446888999999999999999999 8899999999999999
Q ss_pred HHHHHHHH--HHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 035707 619 QEALVSFR--KALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRL 667 (713)
Q Consensus 619 ~eA~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~ 667 (713)
++|.++|+ ++++..|+... +..+|.++.+.|+.+ +|.+++++++..
T Consensus 352 ~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~--~A~~~~~~~l~~ 399 (409)
T TIGR00540 352 IEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKA--EAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHH--HHHHHHHHHHHH
Confidence 99999999 57788887666 559999999999987 999999998764
No 63
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.79 E-value=4.6e-17 Score=159.66 Aligned_cols=202 Identities=18% Similarity=0.220 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHH
Q 035707 441 PYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAK 520 (713)
Q Consensus 441 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~ 520 (713)
+..++.+|..+...|++++|+..++++++.+|.+. .++..+|.++...|++++|+..++++++..| .+...+..++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDY-LAYLALALYYQQLGELEKAEDSFRRALTLNP--NNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHH
Confidence 56777788888888888888888888887777777 7777788888888888888888888877776 56667777777
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Q 035707 521 LQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPY 600 (713)
Q Consensus 521 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 600 (713)
++...|++++|+..|++++...+ .+.....+..+|.++...|++++|...+++++..+|.
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~--------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 167 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPL--------------------YPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ 167 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccc--------------------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 77777777777777777765321 1223455666677777777777777777777776666
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 035707 601 SASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRL 667 (713)
Q Consensus 601 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~ 667 (713)
++.++..+|.++...|++++|+..+++++...|.++..+..++.++...|+.+ +|..+.+.+...
T Consensus 168 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~a~~~~~~~~~~ 232 (234)
T TIGR02521 168 RPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVA--AAQRYGAQLQKL 232 (234)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHH--HHHHHHHHHHhh
Confidence 66666666666666677777776666666666666666666666666666665 666655554443
No 64
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.79 E-value=6.3e-17 Score=158.66 Aligned_cols=205 Identities=16% Similarity=0.080 Sum_probs=188.0
Q ss_pred HHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Q 035707 394 ASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEAR 473 (713)
Q Consensus 394 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 473 (713)
.+..+..+|.++ ...|++++|+..+++++ ..+|.+..++..+|.++...|++++|+..++++++..|.
T Consensus 30 ~~~~~~~la~~~-----------~~~~~~~~A~~~~~~~l-~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 97 (234)
T TIGR02521 30 AAKIRVQLALGY-----------LEQGDLEVAKENLDKAL-EHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN 97 (234)
T ss_pred HHHHHHHHHHHH-----------HHCCCHHHHHHHHHHHH-HhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 358889999999 78899999999999999 999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 035707 474 SNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGK 553 (713)
Q Consensus 474 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 553 (713)
+. ..+..+|.++...|++++|+..+++++...+.+.....+..+|.++...|++++|+..+.+++...|.+
T Consensus 98 ~~-~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------- 168 (234)
T TIGR02521 98 NG-DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR-------- 168 (234)
T ss_pred CH-HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC--------
Confidence 88 999999999999999999999999999865433567788899999999999999999999999986643
Q ss_pred hhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 035707 554 NLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEP 633 (713)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 633 (713)
...+..+|.++...|++++|...+++++...|.++..+..++.++...|+.++|..+.+.+....|
T Consensus 169 --------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 169 --------------PESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred --------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 778999999999999999999999999999888889999999999999999999999887766543
No 65
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.76 E-value=3.7e-16 Score=140.68 Aligned_cols=211 Identities=15% Similarity=-0.004 Sum_probs=193.6
Q ss_pred hHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Q 035707 393 MASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEA 472 (713)
Q Consensus 393 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 472 (713)
....+...||..| ...|++..|...+++++ +.+|++..+|..++.+|...|+.+.|-+.|++++.++|
T Consensus 33 ~aa~arlqLal~Y-----------L~~gd~~~A~~nlekAL-~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p 100 (250)
T COG3063 33 EAAKARLQLALGY-----------LQQGDYAQAKKNLEKAL-EHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP 100 (250)
T ss_pred HHHHHHHHHHHHH-----------HHCCCHHHHHHHHHHHH-HhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC
Confidence 3457888899999 88999999999999999 99999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhh
Q 035707 473 RSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAG 552 (713)
Q Consensus 473 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 552 (713)
++. +++++.|..++.+|++++|...|++++....-+.....+-++|.+..+.|+++.|.+.|+++++.+|+.
T Consensus 101 ~~G-dVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~------- 172 (250)
T COG3063 101 NNG-DVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF------- 172 (250)
T ss_pred Ccc-chhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC-------
Confidence 999 999999999999999999999999999875333667889999999999999999999999999998766
Q ss_pred hhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 035707 553 KNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAE 632 (713)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 632 (713)
+.....++..+...|++-.|..++++.....+.....+.....+-...|+-+.+-.+=.+..+..
T Consensus 173 ---------------~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f 237 (250)
T COG3063 173 ---------------PPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF 237 (250)
T ss_pred ---------------ChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 77888999999999999999999999998888888888888888899999998888888888888
Q ss_pred CCCHHH
Q 035707 633 PNHVPS 638 (713)
Q Consensus 633 p~~~~~ 638 (713)
|...+.
T Consensus 238 P~s~e~ 243 (250)
T COG3063 238 PYSEEY 243 (250)
T ss_pred CCcHHH
Confidence 887654
No 66
>PLN02789 farnesyltranstransferase
Probab=99.76 E-value=2e-16 Score=158.62 Aligned_cols=238 Identities=13% Similarity=0.114 Sum_probs=198.3
Q ss_pred hcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcC-CHHHHHHH
Q 035707 420 LKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQK-QFADAESV 498 (713)
Q Consensus 420 ~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g-~~~~A~~~ 498 (713)
+++.+|..+|+.++ ...+++++|+..+.++++++|.+. .+|...+.++..+| ++++++..
T Consensus 34 ~~~~~a~~~~ra~l------------------~~~e~serAL~lt~~aI~lnP~~y-taW~~R~~iL~~L~~~l~eeL~~ 94 (320)
T PLN02789 34 PEFREAMDYFRAVY------------------ASDERSPRALDLTADVIRLNPGNY-TVWHFRRLCLEALDADLEEELDF 94 (320)
T ss_pred HHHHHHHHHHHHHH------------------HcCCCCHHHHHHHHHHHHHCchhH-HHHHHHHHHHHHcchhHHHHHHH
Confidence 45566666666555 345778899999999999999998 99999999999998 68999999
Q ss_pred HHHHhhccCCCCcHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHH
Q 035707 499 INDSLDQTGKWDQGELLRTKAKLQIAQGRL--KNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLAN 576 (713)
Q Consensus 499 ~~~al~~~p~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 576 (713)
+++++..+| .+..+|...+.+....|+. ++++..++++++.+|.+ ..+|...+.
T Consensus 95 ~~~~i~~np--knyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN----------------------y~AW~~R~w 150 (320)
T PLN02789 95 AEDVAEDNP--KNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKN----------------------YHAWSHRQW 150 (320)
T ss_pred HHHHHHHCC--cchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCccc----------------------HHHHHHHHH
Confidence 999999998 6788899999888888874 67899999999997765 899999999
Q ss_pred HHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHc---CCH----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 035707 577 VYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAK---GLQ----QEALVSFRKALDAEPNHVPSLVSIARVLRQI 649 (713)
Q Consensus 577 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~----~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 649 (713)
++...|++++|+++++++++.+|.+..+|+.++.+.... |.+ ++++.+..+++..+|++..+|+.++.++...
T Consensus 151 ~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~ 230 (320)
T PLN02789 151 VLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDD 230 (320)
T ss_pred HHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcC
Confidence 999999999999999999999999999999999988765 323 5788888899999999999999999999873
Q ss_pred ----cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHc
Q 035707 650 ----GGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGA----------------SALEAVECFEAAAL 702 (713)
Q Consensus 650 ----g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------------~~~~A~~~~~~a~~ 702 (713)
++.. +|..++.+++...|.++.++..|+.+|...... ..++|...++..-+
T Consensus 231 ~~~l~~~~--~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~ 301 (320)
T PLN02789 231 KEALVSDP--EVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEV 301 (320)
T ss_pred Ccccccch--hHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHh
Confidence 3333 799999999999999999999999999864310 03667777776633
No 67
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.75 E-value=1.1e-15 Score=161.04 Aligned_cols=268 Identities=13% Similarity=0.066 Sum_probs=210.5
Q ss_pred HHHhcHHHHHHHHHHHHHhhCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHH
Q 035707 417 KRILKQSQALVALETAEKTMRERDPYIIYHL-CLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADA 495 (713)
Q Consensus 417 ~~~~~~~~A~~~~~~al~~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A 495 (713)
...|++++|.+.+.++. ... +++...+.+ +......|+++.|..++.++.+.+|++........+.++...|++++|
T Consensus 95 ~~eGd~~~A~k~l~~~~-~~~-~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 95 LAEGDYQQVEKLMTRNA-DHA-EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred HhCCCHHHHHHHHHHHH-hcc-cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHH
Confidence 55689999998888776 433 345555555 555599999999999999999999987523334558999999999999
Q ss_pred HHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHH
Q 035707 496 ESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLA 575 (713)
Q Consensus 496 ~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 575 (713)
...++++.+..| +++.++..++.+|...|++++|++.+.++.+..+.++.... .....++..+.
T Consensus 173 l~~l~~~~~~~P--~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~--------------~l~~~a~~~l~ 236 (398)
T PRK10747 173 RHGVDKLLEVAP--RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRA--------------MLEQQAWIGLM 236 (398)
T ss_pred HHHHHHHHhcCC--CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHH--------------HHHHHHHHHHH
Confidence 999999999999 78999999999999999999999999998876432100000 00012333333
Q ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChH
Q 035707 576 NVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMA 655 (713)
Q Consensus 576 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~ 655 (713)
.......+.+....+++..-...|+++.+...++..+...|+.++|...++++++. |.++......+.+ ..++.+
T Consensus 237 ~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~-- 311 (398)
T PRK10747 237 DQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPE-- 311 (398)
T ss_pred HHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChH--
Confidence 33334445556666666665667889999999999999999999999999999994 5455544444443 336765
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCCCC
Q 035707 656 TIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALLEESAPV 709 (713)
Q Consensus 656 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~~~ 709 (713)
+++..+++.++..|+++..+..+|.++...|+ +++|.++|+++++..|+++.
T Consensus 312 ~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~--~~~A~~~le~al~~~P~~~~ 363 (398)
T PRK10747 312 QLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGE--WQEASLAFRAALKQRPDAYD 363 (398)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCCCHHH
Confidence 99999999999999999999999999999999 99999999999999998754
No 68
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.75 E-value=1.8e-15 Score=142.33 Aligned_cols=264 Identities=17% Similarity=0.078 Sum_probs=228.9
Q ss_pred HHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCc----hHHHHHHHHHHHHcCCH
Q 035707 417 KRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSN----VKGYLLLARVLSAQKQF 492 (713)
Q Consensus 417 ~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~~la~~~~~~g~~ 492 (713)
.-.++.++|++.|-.++ +.+|...++...||..|...|..+.|+...+..++ .|+.+ ..+...||.=|...|-+
T Consensus 46 LLs~Q~dKAvdlF~e~l-~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 46 LLSNQPDKAVDLFLEML-QEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred HhhcCcchHHHHHHHHH-hcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 55677899999999999 99999999999999999999999999998887765 45443 14778899999999999
Q ss_pred HHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHH
Q 035707 493 ADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWH 572 (713)
Q Consensus 493 ~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (713)
+.|+.+|....+... .-..++..+..+|....+|++|++.-+++..+.+.. .....+..+.
T Consensus 124 DRAE~~f~~L~de~e--fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~-----------------~~~eIAqfyC 184 (389)
T COG2956 124 DRAEDIFNQLVDEGE--FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT-----------------YRVEIAQFYC 184 (389)
T ss_pred hHHHHHHHHHhcchh--hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc-----------------chhHHHHHHH
Confidence 999999999988654 456789999999999999999999999999886543 2234477889
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHhcC
Q 035707 573 DLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHV-PSLVSIARVLRQIGG 651 (713)
Q Consensus 573 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~-~~~~~la~~~~~~g~ 651 (713)
.++..+....+.+.|...+.++++.+|++..+-..+|.++...|+|+.|++.++.+++.+|+.. .+...|..+|.+.|+
T Consensus 185 ELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~ 264 (389)
T COG2956 185 ELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGK 264 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999999999875 577889999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccC
Q 035707 652 ESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALLEES 706 (713)
Q Consensus 652 ~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~ 706 (713)
.+ +.+.++.++.+..+.. .+-..++..-....- .+.|..+..+-+...|+
T Consensus 265 ~~--~~~~fL~~~~~~~~g~-~~~l~l~~lie~~~G--~~~Aq~~l~~Ql~r~Pt 314 (389)
T COG2956 265 PA--EGLNFLRRAMETNTGA-DAELMLADLIELQEG--IDAAQAYLTRQLRRKPT 314 (389)
T ss_pred HH--HHHHHHHHHHHccCCc-cHHHHHHHHHHHhhC--hHHHHHHHHHHHhhCCc
Confidence 97 9999999999987754 455566666666666 68888888877777775
No 69
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.74 E-value=8.4e-16 Score=160.48 Aligned_cols=248 Identities=19% Similarity=0.151 Sum_probs=206.9
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------hcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc-
Q 035707 436 MRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNL--------EARSNVKGYLLLARVLSAQKQFADAESVINDSLDQT- 506 (713)
Q Consensus 436 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~- 506 (713)
.+|.-..+...++..|..+|+|+.|+..++.+++. .|.-. .....+|.+|..++++.+|+.+|++++.+.
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va-~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVA-SMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHH-HHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 34666677788999999999999999999999987 34332 445569999999999999999999999873
Q ss_pred -----CCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHC
Q 035707 507 -----GKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSL 581 (713)
Q Consensus 507 -----p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 581 (713)
.++....++.+++.+|...|++++|..++++++.+.... .....+.-...+..++.++..+
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~--------------~~~~~~~v~~~l~~~~~~~~~~ 338 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL--------------LGASHPEVAAQLSELAAILQSM 338 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh--------------hccChHHHHHHHHHHHHHHHHh
Confidence 122445689999999999999999999999999986542 2344566678889999999999
Q ss_pred CCHHHHHHHHHHHHhcC-----C---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHH
Q 035707 582 SQWRDAEVCLSKSKAIN-----P---YSASGWHSTGLLYEAKGLQQEALVSFRKALDAE--------PNHVPSLVSIARV 645 (713)
Q Consensus 582 g~~~~A~~~~~~al~~~-----p---~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--------p~~~~~~~~la~~ 645 (713)
+++++|+.++++++++. + ..+..+.++|.+|..+|++++|.+.|++++.+. +.....+..+|..
T Consensus 339 ~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~ 418 (508)
T KOG1840|consen 339 NEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEA 418 (508)
T ss_pred cchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHH
Confidence 99999999999998753 2 335688999999999999999999999999763 3335678899999
Q ss_pred HHHhcCCChHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHc
Q 035707 646 LRQIGGESMATIRCFLTDALRL-------DRTNTTAWYNLGLLYKTYAGASALEAVECFEAAAL 702 (713)
Q Consensus 646 ~~~~g~~~l~~A~~~~~~al~~-------~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~ 702 (713)
|.+.+++. +|...|.++..+ .|+....+.+|+.+|..+|+ +++|.++-++++.
T Consensus 419 ~~~~k~~~--~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~--~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 419 YEELKKYE--EAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGN--YEAAEELEEKVLN 478 (508)
T ss_pred HHHhcccc--hHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHccc--HHHHHHHHHHHHH
Confidence 99999997 898888888765 34445678899999999999 9999999999884
No 70
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.73 E-value=3.6e-16 Score=166.34 Aligned_cols=328 Identities=14% Similarity=0.099 Sum_probs=198.0
Q ss_pred cCCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHH
Q 035707 350 ENSDCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVAL 429 (713)
Q Consensus 350 ~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~ 429 (713)
.+|....++..+|.+|...-+.. .|.++|++|.+ +++.+. .+.-..+..| ....+++.|....
T Consensus 487 ld~~~apaf~~LG~iYrd~~Dm~-RA~kCf~KAFe-LDatda----eaaaa~adty-----------ae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 487 LDVSLAPAFAFLGQIYRDSDDMK-RAKKCFDKAFE-LDATDA----EAAAASADTY-----------AEESTWEEAFEIC 549 (1238)
T ss_pred cccchhHHHHHHHHHHHHHHHHH-HHHHHHHHHhc-CCchhh----hhHHHHHHHh-----------hccccHHHHHHHH
Confidence 67777777777887777766666 78888888877 677666 5666666666 3333333333333
Q ss_pred HHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccC
Q 035707 430 ETAEKTMRERD--PYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTG 507 (713)
Q Consensus 430 ~~al~~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 507 (713)
-.+- +..|.. ...|..+|..|.+.+++..|+..|+.++..+|.+. ..|..+|.+|...|++..|++.|.++..++|
T Consensus 550 l~~~-qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~-n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP 627 (1238)
T KOG1127|consen 550 LRAA-QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDY-NLWLGLGEAYPESGRYSHALKVFTKASLLRP 627 (1238)
T ss_pred HHHh-hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhH-HHHHHHHHHHHhcCceehHHHhhhhhHhcCc
Confidence 2222 222211 12233344444444444444444444444444444 4555555555555555555555555544444
Q ss_pred CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh----------------------------------------
Q 035707 508 KWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKK---------------------------------------- 547 (713)
Q Consensus 508 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~---------------------------------------- 547 (713)
.+....+..+.+....|+|.+|+..+...+........
T Consensus 628 --~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 628 --LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSL 705 (1238)
T ss_pred --HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444332111110
Q ss_pred ---------hhhhhh--------------------hhhhh----ccc----------------CCCccHHHHHHHHHHHH
Q 035707 548 ---------SFSAGK--------------------NLVKN----RQN----------------HDRSLEMETWHDLANVY 578 (713)
Q Consensus 548 ---------~~~~~~--------------------~~~~~----~~~----------------~~~~~~~~~~~~la~~~ 578 (713)
.|...+ .+..+ ... ......+..|+++|.-|
T Consensus 706 ~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGiny 785 (1238)
T KOG1127|consen 706 IHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINY 785 (1238)
T ss_pred HHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHH
Confidence 000000 00000 000 00112256788888777
Q ss_pred HH--------CCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 035707 579 TS--------LSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIG 650 (713)
Q Consensus 579 ~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g 650 (713)
.+ +.+...|+.|+.+++++..++...|+.||.+ ...|++.-|..+|-+.+...|.....|.++|.++....
T Consensus 786 lr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~ 864 (1238)
T KOG1127|consen 786 LRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQ 864 (1238)
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecc
Confidence 66 2333478888888888888888888888888 55578888888888888888888888888888888888
Q ss_pred CCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcc
Q 035707 651 GESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALL 703 (713)
Q Consensus 651 ~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l 703 (713)
+++ -|...|.++..++|.+...|...+.+....|+ .-++...|....++
T Consensus 865 d~E--~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~--ii~~~~lfaHs~el 913 (1238)
T KOG1127|consen 865 DFE--HAEPAFSSVQSLDPLNLVQWLGEALIPEAVGR--IIERLILFAHSDEL 913 (1238)
T ss_pred cHH--HhhHHHHhhhhcCchhhHHHHHHHHhHHHHHH--HHHHHHHHHhhHHh
Confidence 876 88888888888888888888888888888888 88888888764443
No 71
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.3e-16 Score=154.56 Aligned_cols=262 Identities=16% Similarity=0.054 Sum_probs=231.4
Q ss_pred HHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHH
Q 035707 417 KRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAE 496 (713)
Q Consensus 417 ~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~ 496 (713)
.....|..|+..|..|+ .+.|++...|.+.+..+...|+++.|.-.+++.+++.|+.+ ..+...+.++...++..+|.
T Consensus 60 yk~k~Y~nal~~yt~Ai-~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~-k~~~r~~~c~~a~~~~i~A~ 137 (486)
T KOG0550|consen 60 YKQKTYGNALKNYTFAI-DMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFS-KGQLREGQCHLALSDLIEAE 137 (486)
T ss_pred HHHhhHHHHHHHHHHHH-HhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCcc-ccccchhhhhhhhHHHHHHH
Confidence 67888999999999999 99999999999999999999999999999999999999998 89999999999999888887
Q ss_pred HHHHHHh---------------hcc-CCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcc
Q 035707 497 SVINDSL---------------DQT-GKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQ 560 (713)
Q Consensus 497 ~~~~~al---------------~~~-p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 560 (713)
..++..- ..+ ..|....+....+.++.-.|++++|+..--..+++++.+
T Consensus 138 ~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n--------------- 202 (486)
T KOG0550|consen 138 EKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATN--------------- 202 (486)
T ss_pred HHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccch---------------
Confidence 6665321 000 001234566778899999999999999999999987655
Q ss_pred cCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh------------HHHHHHHHHHHcCCHHHHHHHHHHH
Q 035707 561 NHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSAS------------GWHSTGLLYEAKGLQQEALVSFRKA 628 (713)
Q Consensus 561 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------------~~~~lg~~~~~~g~~~eA~~~~~~a 628 (713)
.++.+..|.++...++.+.|+..|++++.++|++.. .|...|.-.++.|++.+|.+.|..+
T Consensus 203 -------~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Ytea 275 (486)
T KOG0550|consen 203 -------AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEA 275 (486)
T ss_pred -------hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHh
Confidence 888999999999999999999999999999998643 4667788889999999999999999
Q ss_pred HhcCCCCH----HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccc
Q 035707 629 LDAEPNHV----PSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALLE 704 (713)
Q Consensus 629 l~~~p~~~----~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~ 704 (713)
|.++|++. ..|.+++.+..+.|+.. +|+...+.++.++|....++...|.++..+++ |++|++.|+++.+..
T Consensus 276 l~idP~n~~~naklY~nra~v~~rLgrl~--eaisdc~~Al~iD~syikall~ra~c~l~le~--~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 276 LNIDPSNKKTNAKLYGNRALVNIRLGRLR--EAISDCNEALKIDSSYIKALLRRANCHLALEK--WEEAVEDYEKAMQLE 351 (486)
T ss_pred hcCCccccchhHHHHHHhHhhhcccCCch--hhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhc
Confidence 99999864 56888999999999997 99999999999999999999999999999999 999999999999987
Q ss_pred cC
Q 035707 705 ES 706 (713)
Q Consensus 705 p~ 706 (713)
.+
T Consensus 352 ~s 353 (486)
T KOG0550|consen 352 KD 353 (486)
T ss_pred cc
Confidence 65
No 72
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.73 E-value=1.5e-14 Score=136.15 Aligned_cols=275 Identities=15% Similarity=0.051 Sum_probs=224.3
Q ss_pred HHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccC
Q 035707 311 ALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICAENKVCIEEGITYARKALSMLQGKC 390 (713)
Q Consensus 311 a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~ 390 (713)
-+..+.|.++|.+.|-+++.. +|...++.+.+|.++...|..+ .|+.+.+..+. .+.-.
T Consensus 44 NfLLs~Q~dKAvdlF~e~l~~-------------------d~~t~e~~ltLGnLfRsRGEvD-RAIRiHQ~L~~-spdlT 102 (389)
T COG2956 44 NFLLSNQPDKAVDLFLEMLQE-------------------DPETFEAHLTLGNLFRSRGEVD-RAIRIHQTLLE-SPDLT 102 (389)
T ss_pred HHHhhcCcchHHHHHHHHHhc-------------------CchhhHHHHHHHHHHHhcchHH-HHHHHHHHHhc-CCCCc
Confidence 344567788888888888773 6788889999999999999999 99999998887 34333
Q ss_pred cchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 035707 391 RQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNL 470 (713)
Q Consensus 391 ~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 470 (713)
.+.+..+...||.-| +..|-++.|...|...+ ....--..++-.|..+|....+|++|++..++..++
T Consensus 103 ~~qr~lAl~qL~~Dy-----------m~aGl~DRAE~~f~~L~-de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~ 170 (389)
T COG2956 103 FEQRLLALQQLGRDY-----------MAAGLLDRAEDIFNQLV-DEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKL 170 (389)
T ss_pred hHHHHHHHHHHHHHH-----------HHhhhhhHHHHHHHHHh-cchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 445667888899999 88999999999999887 555455678888999999999999999999999988
Q ss_pred hcCCc----hHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhh
Q 035707 471 EARSN----VKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRK 546 (713)
Q Consensus 471 ~p~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 546 (713)
.+... ...+..++..+....+++.|...+.++++.+| ....+-..+|++....|+++.|++.++.+++.+|..
T Consensus 171 ~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~--~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y- 247 (389)
T COG2956 171 GGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADK--KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEY- 247 (389)
T ss_pred CCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCc--cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH-
Confidence 87653 13567788888888999999999999999998 678888899999999999999999999999988754
Q ss_pred hhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 035707 547 KSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFR 626 (713)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~ 626 (713)
.+.+.-.|..+|...|+.++.+..+.++.+..+. +.+-..++.+-....-.+.|...+.
T Consensus 248 --------------------l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~ 306 (389)
T COG2956 248 --------------------LSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG-ADAELMLADLIELQEGIDAAQAYLT 306 (389)
T ss_pred --------------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHH
Confidence 3677888899999999999999999999988874 4555666666666667788888888
Q ss_pred HHHhcCCCCHHHHHHH
Q 035707 627 KALDAEPNHVPSLVSI 642 (713)
Q Consensus 627 ~al~~~p~~~~~~~~l 642 (713)
+-+...|+-.-.+..+
T Consensus 307 ~Ql~r~Pt~~gf~rl~ 322 (389)
T COG2956 307 RQLRRKPTMRGFHRLM 322 (389)
T ss_pred HHHhhCCcHHHHHHHH
Confidence 8888888754433333
No 73
>PLN02789 farnesyltranstransferase
Probab=99.73 E-value=2.5e-15 Score=150.72 Aligned_cols=232 Identities=12% Similarity=0.047 Sum_probs=199.9
Q ss_pred hcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCH--HHHH
Q 035707 420 LKQSQALVALETAEKTMRERDPYIIYHLCLENAEQR-KLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQF--ADAE 496 (713)
Q Consensus 420 ~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~--~~A~ 496 (713)
+..++|+..+.+++ .++|.+..+|...+.++...| ++++++..+++++..+|++. .+|...+.++...|+. ++++
T Consensus 51 e~serAL~lt~~aI-~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny-qaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 51 ERSPRALDLTADVI-RLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY-QIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCHHHHHHHHHHH-HHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch-HHhHHHHHHHHHcCchhhHHHH
Confidence 44589999999999 999999999999999999998 68999999999999999999 9999999999999874 7889
Q ss_pred HHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHH
Q 035707 497 SVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLAN 576 (713)
Q Consensus 497 ~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 576 (713)
..++++++.+| .+..+|..++.++...|+++++++.+.++++.+|.+ ..+|+..+.
T Consensus 129 ~~~~kal~~dp--kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N----------------------~sAW~~R~~ 184 (320)
T PLN02789 129 EFTRKILSLDA--KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN----------------------NSAWNQRYF 184 (320)
T ss_pred HHHHHHHHhCc--ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc----------------------hhHHHHHHH
Confidence 99999999999 789999999999999999999999999999998765 889999998
Q ss_pred HHHHC---CCH----HHHHHHHHHHHhcCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 035707 577 VYTSL---SQW----RDAEVCLSKSKAINPYSASGWHSTGLLYEA----KGLQQEALVSFRKALDAEPNHVPSLVSIARV 645 (713)
Q Consensus 577 ~~~~~---g~~----~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~la~~ 645 (713)
+.... |.+ ++++.+..+++.++|++..+|+.++.++.. .++..+|+..+.+++..+|+++.++..|+.+
T Consensus 185 vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~ 264 (320)
T PLN02789 185 VITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDL 264 (320)
T ss_pred HHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHH
Confidence 88776 333 478888899999999999999999999988 3556789999999999999999999999999
Q ss_pred HHHhcCC----------------ChHHHHHHHHHHHhhCCCCHHHHHH
Q 035707 646 LRQIGGE----------------SMATIRCFLTDALRLDRTNTTAWYN 677 (713)
Q Consensus 646 ~~~~g~~----------------~l~~A~~~~~~al~~~p~~~~~~~~ 677 (713)
|...... ..++|...++..-+.||--..-|..
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~~ 312 (320)
T PLN02789 265 LCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYWAW 312 (320)
T ss_pred HHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHHHH
Confidence 9864321 1136777777765666654444543
No 74
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.73 E-value=2.4e-15 Score=157.07 Aligned_cols=244 Identities=17% Similarity=0.116 Sum_probs=203.0
Q ss_pred HHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 035707 395 SIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTM--------RERDPYIIYHLCLENAEQRKLDVALYYAKK 466 (713)
Q Consensus 395 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 466 (713)
..+...++..| ...|+++.|+..++.++ .. .|.-......+|..|..++++.+|+..|++
T Consensus 199 ~~~~~~La~~y-----------~~~g~~e~A~~l~k~Al-~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~ 266 (508)
T KOG1840|consen 199 LRTLRNLAEMY-----------AVQGRLEKAEPLCKQAL-RILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEE 266 (508)
T ss_pred HHHHHHHHHHH-----------HHhccHHHHHHHHHHHH-HHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 36777799999 88899999999999999 76 344444556699999999999999999999
Q ss_pred HHhhh-----cCCc--hHHHHHHHHHHHHcCCHHHHHHHHHHHhhccC------CCCcHHHHHHHHHHHHHhCCHHHHHH
Q 035707 467 LLNLE-----ARSN--VKGYLLLARVLSAQKQFADAESVINDSLDQTG------KWDQGELLRTKAKLQIAQGRLKNAIE 533 (713)
Q Consensus 467 ~l~~~-----p~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~~~la~~~~~~g~~~~A~~ 533 (713)
++.+. ++++ ..++..|+.+|...|++++|..++++++++.. .+.-...+..++.++...+++++|+.
T Consensus 267 AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~ 346 (508)
T KOG1840|consen 267 ALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKK 346 (508)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHH
Confidence 99863 3333 25789999999999999999999999998742 11334577889999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCChhHH
Q 035707 534 TYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAIN--------PYSASGW 605 (713)
Q Consensus 534 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~ 605 (713)
++++++++..+. ...+++..+..+.++|.+|..+|++++|.+.|++++.+. +.....+
T Consensus 347 l~q~al~i~~~~--------------~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l 412 (508)
T KOG1840|consen 347 LLQKALKIYLDA--------------PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPL 412 (508)
T ss_pred HHHHHHHHHHhh--------------ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHH
Confidence 999999986532 234455678899999999999999999999999999864 2235578
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 035707 606 HSTGLLYEAKGLQQEALVSFRKALDA-------EPNHVPSLVSIARVLRQIGGESMATIRCFLTDALR 666 (713)
Q Consensus 606 ~~lg~~~~~~g~~~eA~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~ 666 (713)
..+|..|.+.+++.+|...|.++..+ .|+....+.+|+.+|..+|+++ +|+++..+++.
T Consensus 413 ~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e--~a~~~~~~~~~ 478 (508)
T KOG1840|consen 413 NQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYE--AAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHH--HHHHHHHHHHH
Confidence 88999999999999999999998865 2444567889999999999998 99999988875
No 75
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.72 E-value=3.1e-14 Score=151.90 Aligned_cols=562 Identities=13% Similarity=0.036 Sum_probs=326.0
Q ss_pred CCChHHHhhhhhhhccCCHHHHHHHhhhHhhhcCCHHHHHhhhhcCCccccchhhhhhhhhh--ccccccCCCCCCCCCc
Q 035707 65 NSNIEEAESSLRESGYLNYEEARALLGRLEFQKGNIEAALHVFEGIDVAAVTSRMKVSLSRR--CDQNRRRSQSDAAPPM 142 (713)
Q Consensus 65 ~~~~~~A~~~l~~~l~~~~~~a~~llg~~~~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 142 (713)
-+..-.|-..++++|+-+... ..-.|-+..+..+|..|...+..+...... .+++++- ..++... -.|
T Consensus 381 P~~l~~as~~Ydn~lSaD~sn-~~akgl~~ie~~~y~Daa~tl~lv~~~s~n---d~slselswc~~~~~e------k~m 450 (1238)
T KOG1127|consen 381 PSILSWASICYDNALSADASN-QRAKGLAPIEANVYTDAAITLDLVSSLSFN---DDSLSELSWCLPRALE------KMM 450 (1238)
T ss_pred cHHHHHHHHHHHHhhcCChhh-hhhcchhHHHHhhchHHHHHHHHHHHhhcC---chhhhHhhHHHHHhHH------hhh
Confidence 344566677777777765332 334566788888999988888755322211 1111110 0010000 001
Q ss_pred chhHHHHHHHHH-HHhhhhhhccCchHHHHHHHHHHHHHHHHhcCCCCCCCCCcccchHHHHHHHHHHhHHHHHhcCChh
Q 035707 143 SMHAVSLLVEAI-FLKTKSLQGLGRFEEACQSCKVILDTVEHALPEGLPGNHSIDCKLQETLNKAVELLPELYKLAGDPD 221 (713)
Q Consensus 143 ~~~~~~~~~e~~-~~~~~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~ 221 (713)
-.... ...+.+ +..++.+ ...+.+.|...|-+.+. +...+..++-.||.+|..--+..
T Consensus 451 dva~~-~~~e~~~~w~a~~~-~rK~~~~al~ali~alr-------------------ld~~~apaf~~LG~iYrd~~Dm~ 509 (1238)
T KOG1127|consen 451 DVALL-LECENSEFWVALGC-MRKNSALALHALIRALR-------------------LDVSLAPAFAFLGQIYRDSDDMK 509 (1238)
T ss_pred hHHHH-HHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHh-------------------cccchhHHHHHHHHHHHHHHHHH
Confidence 11111 111221 1112211 22335555555544443 22345678889999999999999
Q ss_pred HHHHHHHHHhcccCCCCh------hHHHHH---HHHHHHHHhhcCCCCCCCccc----ccccccccCCchhHHHHHHHHH
Q 035707 222 ETILSYRRALLYYWNLDI------ETTARI---EKKFAVFLLYSGTDASPPNLR----LQMELSFVPRNNIEEAVLLLLI 288 (713)
Q Consensus 222 eA~~~~~~al~~~~~~~~------~~~~~i---~~~~a~~ll~~~~~~~~~~~~----~~~~~~~~~~~~~eeA~~ll~~ 288 (713)
.|..+|++|...++..-. ++++.. ...++. .+..+.. .+.... .+....|...+|...|+..+
T Consensus 510 RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I-~l~~~qk-a~a~~~k~nW~~rG~yyLea~n~h~aV~~f-- 585 (1238)
T KOG1127|consen 510 RAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEI-CLRAAQK-APAFACKENWVQRGPYYLEAHNLHGAVCEF-- 585 (1238)
T ss_pred HHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHH-HHHHhhh-chHHHHHhhhhhccccccCccchhhHHHHH--
Confidence 999999999887433110 011111 111122 1222211 111111 13444567788888888776
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHhc
Q 035707 289 LLKKIVLGKIEWDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICAEN 368 (713)
Q Consensus 289 ~~~~~~l~~~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~~ 368 (713)
+..+...|.|...+..||.+|..+|++..|.+.|.++.. .+|.+.-..+..+.+....
T Consensus 586 ---QsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~-------------------LrP~s~y~~fk~A~~ecd~ 643 (1238)
T KOG1127|consen 586 ---QSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL-------------------LRPLSKYGRFKEAVMECDN 643 (1238)
T ss_pred ---HHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh-------------------cCcHhHHHHHHHHHHHHHh
Confidence 677888899999999999999999999999999988754 4677777778888888888
Q ss_pred CCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHH-------------------------
Q 035707 369 KVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQS------------------------- 423 (713)
Q Consensus 369 g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~------------------------- 423 (713)
|.+. +|+..+..++. ...... .+...+|.++......... .|-+.
T Consensus 644 GkYk-eald~l~~ii~-~~s~e~----~~q~gLaE~~ir~akd~~~----~gf~~kavd~~eksie~f~~~l~h~~~~~~ 713 (1238)
T KOG1127|consen 644 GKYK-EALDALGLIIY-AFSLER----TGQNGLAESVIRDAKDSAI----TGFQKKAVDFFEKSIESFIVSLIHSLQSDR 713 (1238)
T ss_pred hhHH-HHHHHHHHHHH-HHHHHH----HhhhhHHHHHHHHHHHHHH----HHHhhhhhHHHHHHHHHHHHHHHHhhhhhH
Confidence 8888 88888888776 222111 2222222222211111000 00000
Q ss_pred ----------------------------------------------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----
Q 035707 424 ----------------------------------------------QALVALETAEKTMRERDPYIIYHLCLENAE---- 453 (713)
Q Consensus 424 ----------------------------------------------~A~~~~~~al~~~~p~~~~~~~~la~~~~~---- 453 (713)
-|.+++-..+ ++- .++..|+++|..|++
T Consensus 714 ~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl-sl~-~~~~~WyNLGinylr~f~~ 791 (1238)
T KOG1127|consen 714 LQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL-SLA-IHMYPWYNLGINYLRYFLL 791 (1238)
T ss_pred HHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH-HHh-hccchHHHHhHHHHHHHHH
Confidence 1111111111 111 124457777776665
Q ss_pred ----cCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHH
Q 035707 454 ----QRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLK 529 (713)
Q Consensus 454 ----~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~ 529 (713)
+.+...|+.++.+++++..++. ..|..||.+ ...|++.-|...|-+.+...| .....|.++|.++....+++
T Consensus 792 l~et~~~~~~Ai~c~KkaV~L~ann~-~~WnaLGVl-sg~gnva~aQHCfIks~~sep--~~~~~W~NlgvL~l~n~d~E 867 (1238)
T KOG1127|consen 792 LGETMKDACTAIRCCKKAVSLCANNE-GLWNALGVL-SGIGNVACAQHCFIKSRFSEP--TCHCQWLNLGVLVLENQDFE 867 (1238)
T ss_pred cCCcchhHHHHHHHHHHHHHHhhccH-HHHHHHHHh-hccchhhhhhhhhhhhhhccc--cchhheeccceeEEecccHH
Confidence 2233467888888888777777 777777766 555777777777777777777 56667777787777777888
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhh-----------------cccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 035707 530 NAIETYVNLLAVLQFRKKSFSAGKNLVKN-----------------RQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLS 592 (713)
Q Consensus 530 ~A~~~~~~~l~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 592 (713)
.|...|.++..++|.+...|.....+... ............|..--.....+|++++-+...+
T Consensus 868 ~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ 947 (1238)
T KOG1127|consen 868 HAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTAR 947 (1238)
T ss_pred HhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhh
Confidence 88888887777777776555432111110 1112223345666666777777777776555444
Q ss_pred ----------HHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----C-CCCHHHHHHHHHHHHHhcCCChHH
Q 035707 593 ----------KSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDA-----E-PNHVPSLVSIARVLRQIGGESMAT 656 (713)
Q Consensus 593 ----------~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~-p~~~~~~~~la~~~~~~g~~~l~~ 656 (713)
+.+...|+...++...|.....++.+.+|.+.+.+.+.+ + ..+..+.-..|.++...|.++ .
T Consensus 948 ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe--~ 1025 (1238)
T KOG1127|consen 948 KISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFE--S 1025 (1238)
T ss_pred hhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchh--h
Confidence 345567888889999999999999999999888887643 1 223335667788888888876 5
Q ss_pred HHHHHHHHHhhCCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCC
Q 035707 657 IRCFLTDALRLDRTNT-TAWYNLGLLYKTYAGASALEAVECFEAAALLEESA 707 (713)
Q Consensus 657 A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~ 707 (713)
|...+.. .|... +--.......+-.|+ ++++.++|++|+.+..++
T Consensus 1026 A~~a~~~----~~~evdEdi~gt~l~lFfknd--f~~sl~~fe~aLsis~se 1071 (1238)
T KOG1127|consen 1026 AKKASWK----EWMEVDEDIRGTDLTLFFKND--FFSSLEFFEQALSISNSE 1071 (1238)
T ss_pred Hhhhhcc----cchhHHHHHhhhhHHHHHHhH--HHHHHHHHHHHhhhcccc
Confidence 5443321 11100 000111122255666 777777777777665443
No 76
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.72 E-value=3.4e-14 Score=145.65 Aligned_cols=332 Identities=15% Similarity=0.120 Sum_probs=258.0
Q ss_pred HHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCc
Q 035707 312 LSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCR 391 (713)
Q Consensus 312 ~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~ 391 (713)
....+||....+..+.+++. .|++.+++.+.|......|+.. +|..+.+.++. .++.+.
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k-------------------~~eHgeslAmkGL~L~~lg~~~-ea~~~vr~glr-~d~~S~ 75 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKK-------------------FPEHGESLAMKGLTLNCLGKKE-EAYELVRLGLR-NDLKSH 75 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHh-------------------CCccchhHHhccchhhcccchH-HHHHHHHHHhc-cCcccc
Confidence 44668888888888888873 6899999999999999999999 99999999999 788888
Q ss_pred chHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Q 035707 392 QMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLE 471 (713)
Q Consensus 392 ~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 471 (713)
..|+.+|.++ ....+|++|+++|..|+ .++|+|..+|..++....++|+++.....-.+.++..
T Consensus 76 ----vCwHv~gl~~-----------R~dK~Y~eaiKcy~nAl-~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~ 139 (700)
T KOG1156|consen 76 ----VCWHVLGLLQ-----------RSDKKYDEAIKCYRNAL-KIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR 139 (700)
T ss_pred ----hhHHHHHHHH-----------hhhhhHHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 9999999999 88899999999999999 9999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc---CCCC---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 035707 472 ARSNVKGYLLLARVLSAQKQFADAESVINDSLDQT---GKWD---QGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFR 545 (713)
Q Consensus 472 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 545 (713)
|... ..|...+..+.-.|++..|..+++...... |... ..........+....|.+++|.+.+..--...
T Consensus 140 ~~~r-a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i--- 215 (700)
T KOG1156|consen 140 PSQR-ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI--- 215 (700)
T ss_pred hhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH---
Confidence 9988 899999999999999999999888776654 3111 12344555666677788777777665432221
Q ss_pred hhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHH-H-
Q 035707 546 KKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEAL-V- 623 (713)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~-~- 623 (713)
.+........+.++...+++++|...|...+..+|++...+..+-.++..-.+--+++ .
T Consensus 216 -------------------~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~l 276 (700)
T KOG1156|consen 216 -------------------VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKAL 276 (700)
T ss_pred -------------------HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 1124455567888888888999999998888888887655444333332000111111 1
Q ss_pred -------------------------------------------------------------HHHHHH-------hc----
Q 035707 624 -------------------------------------------------------------SFRKAL-------DA---- 631 (713)
Q Consensus 624 -------------------------------------------------------------~~~~al-------~~---- 631 (713)
..++.+ .-
T Consensus 277 y~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f 356 (700)
T KOG1156|consen 277 YAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMF 356 (700)
T ss_pred HHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCC
Confidence 111111 00
Q ss_pred C--------CCCH--HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 035707 632 E--------PNHV--PSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAA 701 (713)
Q Consensus 632 ~--------p~~~--~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~ 701 (713)
+ |... ..++.++.-+-..|+++ .|..+++.|+...|+-++.+...|.++...|. +++|..+++.+.
T Consensus 357 ~~~D~~~~E~PttllWt~y~laqh~D~~g~~~--~A~~yId~AIdHTPTliEly~~KaRI~kH~G~--l~eAa~~l~ea~ 432 (700)
T KOG1156|consen 357 NFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYE--VALEYIDLAIDHTPTLIELYLVKARIFKHAGL--LDEAAAWLDEAQ 432 (700)
T ss_pred CcccccccCCchHHHHHHHHHHHHHHHcccHH--HHHHHHHHHhccCchHHHHHHHHHHHHHhcCC--hHHHHHHHHHHH
Confidence 0 1111 23455677778888887 99999999999999999999999999999999 999999999999
Q ss_pred ccccCC
Q 035707 702 LLEESA 707 (713)
Q Consensus 702 ~l~p~~ 707 (713)
+++-.|
T Consensus 433 elD~aD 438 (700)
T KOG1156|consen 433 ELDTAD 438 (700)
T ss_pred hccchh
Confidence 987543
No 77
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=5.7e-16 Score=150.28 Aligned_cols=281 Identities=16% Similarity=0.080 Sum_probs=240.6
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhC
Q 035707 358 LLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMR 437 (713)
Q Consensus 358 ~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 437 (713)
....|..++...+|. +|+..+..+++ ..|.+. ..|...+.++ ...+++++|.-..++.+ +++
T Consensus 52 ~k~~gn~~yk~k~Y~-nal~~yt~Ai~-~~pd~a----~yy~nRAa~~-----------m~~~~~~~a~~dar~~~-r~k 113 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYG-NALKNYTFAID-MCPDNA----SYYSNRAATL-----------MMLGRFEEALGDARQSV-RLK 113 (486)
T ss_pred HHhhcchHHHHhhHH-HHHHHHHHHHH-hCccch----hhhchhHHHH-----------HHHHhHhhcccchhhhe-ecC
Confidence 344556778888999 99999999999 888887 8888888888 78899999999999999 999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------hhhcCCc-----hHHHHHHHHHHHHcCCHHHHHHHHH
Q 035707 438 ERDPYIIYHLCLENAEQRKLDVALYYAKKLL------------NLEARSN-----VKGYLLLARVLSAQKQFADAESVIN 500 (713)
Q Consensus 438 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l------------~~~p~~~-----~~~~~~la~~~~~~g~~~~A~~~~~ 500 (713)
|..+......+.++...++..+|...++..- .+-|.+. ..+...-+.++...|++++|...--
T Consensus 114 d~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~ 193 (486)
T KOG0550|consen 114 DGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAI 193 (486)
T ss_pred CCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHH
Confidence 9999988889999988888877776554221 1111111 1355667889999999999999999
Q ss_pred HHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHH
Q 035707 501 DSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTS 580 (713)
Q Consensus 501 ~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 580 (713)
..+++++ .+..+++..+.++...++.+.|+..|++++.++|++.+.-... ..+.....|..-|.-.++
T Consensus 194 ~ilkld~--~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~----------~~~k~le~~k~~gN~~fk 261 (486)
T KOG0550|consen 194 DILKLDA--TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSAS----------MMPKKLEVKKERGNDAFK 261 (486)
T ss_pred HHHhccc--chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHh----------hhHHHHHHHHhhhhhHhh
Confidence 9999998 7899999999999999999999999999999999875543321 234457889999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHH
Q 035707 581 LSQWRDAEVCLSKSKAINPYS----ASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMAT 656 (713)
Q Consensus 581 ~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~ 656 (713)
.|++.+|.++|.+++.++|.+ +..|.+++.+..+.|+..+|+...+.++.++|....++...|.++...++++ +
T Consensus 262 ~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e--~ 339 (486)
T KOG0550|consen 262 NGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWE--E 339 (486)
T ss_pred ccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHH--H
Confidence 999999999999999999986 4568899999999999999999999999999999999999999999999997 9
Q ss_pred HHHHHHHHHhhCCC
Q 035707 657 IRCFLTDALRLDRT 670 (713)
Q Consensus 657 A~~~~~~al~~~p~ 670 (713)
|++.|+++++...+
T Consensus 340 AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 340 AVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHhhccc
Confidence 99999999998765
No 78
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.70 E-value=3.9e-14 Score=148.56 Aligned_cols=313 Identities=16% Similarity=0.012 Sum_probs=227.7
Q ss_pred CCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHH
Q 035707 351 NSDCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALE 430 (713)
Q Consensus 351 ~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 430 (713)
+|+.+.++..+|..+...|+.. ++...+.++.. ..+.+. ......+..+.++ ...|++++|...++
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~-~~~~~~~~~~~-~~~~~~-~~~e~~~~~a~~~-----------~~~g~~~~A~~~~~ 67 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERP-AAAAKAAAAAQ-ALAARA-TERERAHVEALSA-----------WIAGDLPKALALLE 67 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcc-hHHHHHHHHHH-HhccCC-CHHHHHHHHHHHH-----------HHcCCHHHHHHHHH
Confidence 7999999999999999999999 88888888888 555443 2235566778888 78889999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----hhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 035707 431 TAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLL----NLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQT 506 (713)
Q Consensus 431 ~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l----~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 506 (713)
+++ ..+|++..++.. +..+...|++..+...+.+++ ...|... ..+..+|.++..+|++++|+..++++++..
T Consensus 68 ~~l-~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~a~~~~~~G~~~~A~~~~~~al~~~ 144 (355)
T cd05804 68 QLL-DDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYW-YLLGMLAFGLEEAGQYDRAEEAARRALELN 144 (355)
T ss_pred HHH-HHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999 999999987775 656655555444444444444 3445554 677788999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHH
Q 035707 507 GKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRD 586 (713)
Q Consensus 507 p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 586 (713)
| ++..++..+|.++...|++++|+..+++++...|.. .......|..++.++...|++++
T Consensus 145 p--~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~------------------~~~~~~~~~~la~~~~~~G~~~~ 204 (355)
T cd05804 145 P--DDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS------------------SMLRGHNWWHLALFYLERGDYEA 204 (355)
T ss_pred C--CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC------------------cchhHHHHHHHHHHHHHCCCHHH
Confidence 8 678889999999999999999999999999886531 12224567889999999999999
Q ss_pred HHHHHHHHHhcCCCC--hhHHH---HHHHHHHHcCCHHHHHHH--H-HHHHhcCCCC--HHHHHHHHHHHHHhcCCChHH
Q 035707 587 AEVCLSKSKAINPYS--ASGWH---STGLLYEAKGLQQEALVS--F-RKALDAEPNH--VPSLVSIARVLRQIGGESMAT 656 (713)
Q Consensus 587 A~~~~~~al~~~p~~--~~~~~---~lg~~~~~~g~~~eA~~~--~-~~al~~~p~~--~~~~~~la~~~~~~g~~~l~~ 656 (713)
|+..|++++...|.. ..... .+...+...|....+..+ . .......|.. .......+.++...|+.+ +
T Consensus 205 A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~ 282 (355)
T cd05804 205 ALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKD--A 282 (355)
T ss_pred HHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHH--H
Confidence 999999998766622 11111 122223334433333222 1 1111111221 222235677777888876 8
Q ss_pred HHHHHHHHHhhCCC---------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccc
Q 035707 657 IRCFLTDALRLDRT---------NTTAWYNLGLLYKTYAGASALEAVECFEAAALLE 704 (713)
Q Consensus 657 A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~ 704 (713)
|...++........ ........+.++...|+ +++|.+.+..++.+-
T Consensus 283 a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~--~~~A~~~L~~al~~a 337 (355)
T cd05804 283 LDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGN--YATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCC--HHHHHHHHHHHHHHH
Confidence 98888776553221 23455678999999999 999999999998754
No 79
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.68 E-value=2.3e-13 Score=139.61 Aligned_cols=369 Identities=16% Similarity=0.103 Sum_probs=280.9
Q ss_pred HHHhhcCCCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHhcCCC
Q 035707 292 KIVLGKIEWDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICAENKVC 371 (713)
Q Consensus 292 ~~~l~~~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~~g~~ 371 (713)
+.++.+.|+.++.....|..+...|+.++|.......+.. ++.....|..+|.++....+|
T Consensus 31 ~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~-------------------d~~S~vCwHv~gl~~R~dK~Y 91 (700)
T KOG1156|consen 31 KQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN-------------------DLKSHVCWHVLGLLQRSDKKY 91 (700)
T ss_pred HHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhcc-------------------CcccchhHHHHHHHHhhhhhH
Confidence 4566789999999999999999999999999998888774 566777888888888899999
Q ss_pred hHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 035707 372 IEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLEN 451 (713)
Q Consensus 372 ~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~ 451 (713)
+ +|+++|+.|+. ..|+|. ..+.-++... .+.++++-....-.+.+ +..|.....|...+..+
T Consensus 92 ~-eaiKcy~nAl~-~~~dN~----qilrDlslLQ-----------~QmRd~~~~~~tr~~LL-ql~~~~ra~w~~~Avs~ 153 (700)
T KOG1156|consen 92 D-EAIKCYRNALK-IEKDNL----QILRDLSLLQ-----------IQMRDYEGYLETRNQLL-QLRPSQRASWIGFAVAQ 153 (700)
T ss_pred H-HHHHHHHHHHh-cCCCcH----HHHHHHHHHH-----------HHHHhhhhHHHHHHHHH-HhhhhhHHHHHHHHHHH
Confidence 9 99999999999 899998 8888888888 78888899999989999 99999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhh---cCCc----hHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHH
Q 035707 452 AEQRKLDVALYYAKKLLNLE---ARSN----VKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIA 524 (713)
Q Consensus 452 ~~~g~~~~A~~~~~~~l~~~---p~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~ 524 (713)
...|++..|....+...+.. |+.. .........++...|.+++|++.+..--..-- +.....-..+.++..
T Consensus 154 ~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~--Dkla~~e~ka~l~~k 231 (700)
T KOG1156|consen 154 HLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIV--DKLAFEETKADLLMK 231 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHH--HHHHHhhhHHHHHHH
Confidence 99999999999888887655 2221 02344455666677777777777655433222 234455667788888
Q ss_pred hCCHHHHHHHHHHHHHHHhhhhhhhhhhhh--------------hhh---------------------------------
Q 035707 525 QGRLKNAIETYVNLLAVLQFRKKSFSAGKN--------------LVK--------------------------------- 557 (713)
Q Consensus 525 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~--------------~~~--------------------------------- 557 (713)
++++++|+..|..++..+|++..-...... +..
T Consensus 232 l~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL 311 (700)
T KOG1156|consen 232 LGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYL 311 (700)
T ss_pred HhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHH
Confidence 888888888888888888877542221000 000
Q ss_pred --------------------h-----------------------------cccCCCccHHHHHHHHHHHHHHCCCHHHHH
Q 035707 558 --------------------N-----------------------------RQNHDRSLEMETWHDLANVYTSLSQWRDAE 588 (713)
Q Consensus 558 --------------------~-----------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 588 (713)
. ........-...++.++.-+-..|+++.|.
T Consensus 312 ~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~ 391 (700)
T KOG1156|consen 312 RPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVAL 391 (700)
T ss_pred HHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHH
Confidence 0 000111122445567788888999999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhC
Q 035707 589 VCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLD 668 (713)
Q Consensus 589 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~ 668 (713)
.+++.++...|.-++.+...|+++...|++++|..++..+.+++..+...-..-|.-..+.++.+ +|.....+.-+-.
T Consensus 392 ~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~--eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 392 EYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIE--EAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccH--HHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999998766555445677777778876 8888877665543
Q ss_pred CC-------CHHHHHHH--HHHHHHhCCCCHHHHHHHHHHHHcc
Q 035707 669 RT-------NTTAWYNL--GLLYKTYAGASALEAVECFEAAALL 703 (713)
Q Consensus 669 p~-------~~~~~~~l--g~~~~~~g~~~~~~A~~~~~~a~~l 703 (713)
-+ ..-.|+.+ |..|.++|+ +..|+.-|..+-+.
T Consensus 470 ~~~~~~L~~mqcmWf~~E~g~ay~r~~k--~g~ALKkfh~i~k~ 511 (700)
T KOG1156|consen 470 FGAVNNLAEMQCMWFQLEDGEAYLRQNK--LGLALKKFHEIEKH 511 (700)
T ss_pred cchhhhHHHhhhHHHhHhhhHHHHHHHH--HHHHHHHHhhHHHH
Confidence 21 11246655 888999999 99998877766543
No 80
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=1e-11 Score=126.37 Aligned_cols=473 Identities=16% Similarity=0.073 Sum_probs=293.3
Q ss_pred cccCCCCChHHHhhhhhhhccC--CHHHHHHHhhhHhhhcCCHHHHHhhhhcCCccccchhhhhhhhhhccccccCCCCC
Q 035707 60 DAKVDNSNIEEAESSLRESGYL--NYEEARALLGRLEFQKGNIEAALHVFEGIDVAAVTSRMKVSLSRRCDQNRRRSQSD 137 (713)
Q Consensus 60 ~~~~~~~~~~~A~~~l~~~l~~--~~~~a~~llg~~~~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (713)
..+..+|+|++|.......++. +.++|..--=-...+.++|+.|+...+.-..
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------------------------- 74 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------------------------- 74 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch-------------------------
Confidence 4566789999999999999976 5666665555567799999999955442110
Q ss_pred CCCCcchhHHHHHHHHHHHhhhhhhccCchHHHHHHHHHHHHHHHHhcCCCCCCCCCcccchHHHHHHHHHHhHHHHHhc
Q 035707 138 AAPPMSMHAVSLLVEAIFLKTKSLQGLGRFEEACQSCKVILDTVEHALPEGLPGNHSIDCKLQETLNKAVELLPELYKLA 217 (713)
Q Consensus 138 ~~~~~~~~~~~~~~e~~~~~~~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~ 217 (713)
.....-..|.|++|.+++++.++|.+.++ .++- .+ -..+++-+.++.++
T Consensus 75 ---------~~~~~~~~fEKAYc~Yrlnk~Dealk~~~-~~~~--------~~-------------~~ll~L~AQvlYrl 123 (652)
T KOG2376|consen 75 ---------LLVINSFFFEKAYCEYRLNKLDEALKTLK-GLDR--------LD-------------DKLLELRAQVLYRL 123 (652)
T ss_pred ---------hhhcchhhHHHHHHHHHcccHHHHHHHHh-cccc--------cc-------------hHHHHHHHHHHHHH
Confidence 00000112789999999999999988766 2220 00 13567778899999
Q ss_pred CChhHHHHHHHHHhcccCC-CChhHHHHHHHHHHHHHhhcCCCCCCCcccccccccccCCchhHHHHHHHHHHHHHHHhh
Q 035707 218 GDPDETILSYRRALLYYWN-LDIETTARIEKKFAVFLLYSGTDASPPNLRLQMELSFVPRNNIEEAVLLLLILLKKIVLG 296 (713)
Q Consensus 218 g~~~eA~~~~~~al~~~~~-~~~~~~~~i~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~eeA~~ll~~~~~~~~l~ 296 (713)
|+|++|+..|+..++.+.. .+....+.+ .+..-.. .+ . ......
T Consensus 124 ~~ydealdiY~~L~kn~~dd~d~~~r~nl---~a~~a~l-------------------------~~------~-~~q~v~ 168 (652)
T KOG2376|consen 124 ERYDEALDIYQHLAKNNSDDQDEERRANL---LAVAAAL-------------------------QV------Q-LLQSVP 168 (652)
T ss_pred hhHHHHHHHHHHHHhcCCchHHHHHHHHH---HHHHHhh-------------------------hH------H-HHHhcc
Confidence 9999999999999887433 111111111 0000000 00 0 000111
Q ss_pred cCCC-cHHHHHHHHHHHHhcCcHHHHHHHHHhhCCC--------CCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHh
Q 035707 297 KIEW-DPSIIDHLSFALSVSGELWTLAHQVEELLPG--------VMGNKKRYCTLALCYLGEENSDCNLELLVASKICAE 367 (713)
Q Consensus 297 ~~~~-~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~--------~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~ 367 (713)
..|. +....+..+..+...|+|..|.+.++.++.. ...+.+.-. +-......++.++..
T Consensus 169 ~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~------------el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 169 EVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEE------------ELNPIRVQLAYVLQL 236 (652)
T ss_pred CCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHH------------HHHHHHHHHHHHHHH
Confidence 1222 4567778888999999999999999988431 111111100 113456778888899
Q ss_pred cCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccH--HHHHhcHHHHHHHHHHHHHhhCCCCHHHHH
Q 035707 368 NKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSD--SKRILKQSQALVALETAEKTMRERDPYIIY 445 (713)
Q Consensus 368 ~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~al~~~~p~~~~~~~ 445 (713)
.|+.. +|..+|...++ ..+.+....+.+-++|-.+-..+.-.+... ..+.....-+...+.+.. . ..-..++.
T Consensus 237 ~Gqt~-ea~~iy~~~i~-~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls-~--~qk~~i~~ 311 (652)
T KOG2376|consen 237 QGQTA-EASSIYVDIIK-RNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLS-K--KQKQAIYR 311 (652)
T ss_pred hcchH-HHHHHHHHHHH-hcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHH-H--HHHHHHHH
Confidence 99999 99999999999 677776566666666654442222221100 011111111111111111 0 11223456
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHh
Q 035707 446 HLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQ 525 (713)
Q Consensus 446 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~ 525 (713)
+.+...+..+.-+++.+...+.-...|... .-.........+...+.+|...+....+..|. ....+...++.+.+.+
T Consensus 312 N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~-~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~-~s~~v~L~~aQl~is~ 389 (652)
T KOG2376|consen 312 NNALLALFTNKMDQVRELSASLPGMSPESL-FPILLQEATKVREKKHKKAIELLLQFADGHPE-KSKVVLLLRAQLKISQ 389 (652)
T ss_pred HHHHHHHHhhhHHHHHHHHHhCCccCchHH-HHHHHHHHHHHHHHHHhhhHHHHHHHhccCCc-hhHHHHHHHHHHHHhc
Confidence 666666667776666665555444444443 22222333333344788999999999888883 3467888999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------C
Q 035707 526 GRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAI-------N 598 (713)
Q Consensus 526 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~ 598 (713)
|+++.|++.+...+...... .......+.+-..+...+...++-+-|...+.+++.- .
T Consensus 390 gn~~~A~~il~~~~~~~~ss---------------~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s 454 (652)
T KOG2376|consen 390 GNPEVALEILSLFLESWKSS---------------ILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS 454 (652)
T ss_pred CCHHHHHHHHHHHhhhhhhh---------------hhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccc
Confidence 99999999999555322111 1111222445555666777777766677777666542 2
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHH
Q 035707 599 PYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCF 660 (713)
Q Consensus 599 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~ 660 (713)
+.....+-..+....+.|+-++|...+++.++.+|++.+++..+...|....- +.|..+
T Consensus 455 ~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d~---eka~~l 513 (652)
T KOG2376|consen 455 IALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLDP---EKAESL 513 (652)
T ss_pred hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcCH---HHHHHH
Confidence 22234555667777788999999999999999999999999999888887643 256555
No 81
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=6.8e-11 Score=117.09 Aligned_cols=489 Identities=12% Similarity=0.043 Sum_probs=312.6
Q ss_pred hhhhccCC--HHHHHHHhhhHhhhcCCHHHHHhhhhcCCccccchhhhhhhhhhccccccCCCCCCCCCcchhHHHHHHH
Q 035707 75 LRESGYLN--YEEARALLGRLEFQKGNIEAALHVFEGIDVAAVTSRMKVSLSRRCDQNRRRSQSDAAPPMSMHAVSLLVE 152 (713)
Q Consensus 75 l~~~l~~~--~~~a~~llg~~~~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 152 (713)
|...+.-| +...|.-.|+-+..++++..|-.+|+++.... .+..+
T Consensus 62 fEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd--~r~it------------------------------- 108 (677)
T KOG1915|consen 62 FEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVD--YRNIT------------------------------- 108 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc--cccch-------------------------------
Confidence 33444444 55667777888889999999999999762211 11111
Q ss_pred HHHHhhhhhhccCchHHHHHHHHHHHHHHHHhcCCCCCCCCCcccchHHHHHHHHHHhHHHHHhcCChhHHHHHHHHHhc
Q 035707 153 AIFLKTKSLQGLGRFEEACQSCKVILDTVEHALPEGLPGNHSIDCKLQETLNKAVELLPELYKLAGDPDETILSYRRALL 232 (713)
Q Consensus 153 ~~~~~~~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~~~~al~ 232 (713)
.+..-+.+-.+......|...+..++.+.+. +.+-++-....=-..|+...|.+.|.+-+.
T Consensus 109 LWlkYae~Emknk~vNhARNv~dRAvt~lPR-------------------VdqlWyKY~ymEE~LgNi~gaRqiferW~~ 169 (677)
T KOG1915|consen 109 LWLKYAEFEMKNKQVNHARNVWDRAVTILPR-------------------VDQLWYKYIYMEEMLGNIAGARQIFERWME 169 (677)
T ss_pred HHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-------------------HHHHHHHHHHHHHHhcccHHHHHHHHHHHc
Confidence 1112233334455666676666666554321 122222222222345777888888887765
Q ss_pred ccCCCChhHHHHHHHHHHHHHhhcCCCCCCCcccccccccccCCchhHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Q 035707 233 YYWNLDIETTARIEKKFAVFLLYSGTDASPPNLRLQMELSFVPRNNIEEAVLLLLILLKKIVLGKIEWDPSIIDHLSFAL 312 (713)
Q Consensus 233 ~~~~~~~~~~~~i~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~eeA~~ll~~~~~~~~l~~~~~~~~~~~~l~~a~ 312 (713)
|.|+...-.+. -.+ -...++++.|..++.. .++ - ..+...+..-+..-
T Consensus 170 --w~P~eqaW~sf----I~f--------------------ElRykeieraR~IYer----fV~-~-HP~v~~wikyarFE 217 (677)
T KOG1915|consen 170 --WEPDEQAWLSF----IKF--------------------ELRYKEIERARSIYER----FVL-V-HPKVSNWIKYARFE 217 (677)
T ss_pred --CCCcHHHHHHH----HHH--------------------HHHhhHHHHHHHHHHH----Hhe-e-cccHHHHHHHHHHH
Confidence 34444432111 000 0111233444433311 111 1 12334444445556
Q ss_pred HhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcc
Q 035707 313 SVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQ 392 (713)
Q Consensus 313 ~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~ 392 (713)
.++|+...+...|+.++....++. .+...+...|..-..+..+. .|..+|+-+++..+.+...
T Consensus 218 ~k~g~~~~aR~VyerAie~~~~d~----------------~~e~lfvaFA~fEe~qkE~E-Rar~iykyAld~~pk~rae 280 (677)
T KOG1915|consen 218 EKHGNVALARSVYERAIEFLGDDE----------------EAEILFVAFAEFEERQKEYE-RARFIYKYALDHIPKGRAE 280 (677)
T ss_pred HhcCcHHHHHHHHHHHHHHhhhHH----------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCcccHH
Confidence 678888888888888765432211 11222333344445566777 8999999999844333221
Q ss_pred hHHHHHHHHHHHHhhcccccccHHHHHhcHHHH-----HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 035707 393 MASIANCLLGVLLSSQSRSVVSDSKRILKQSQA-----LVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKL 467 (713)
Q Consensus 393 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A-----~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 467 (713)
..-..+...-.-+ |+. .-.+++ .-.|++.+ ..+|.|-++|+..-.+-...|+.+.-.+.|+++
T Consensus 281 eL~k~~~~fEKqf---Gd~--------~gIEd~Iv~KRk~qYE~~v-~~np~nYDsWfdylrL~e~~g~~~~Ire~yErA 348 (677)
T KOG1915|consen 281 ELYKKYTAFEKQF---GDK--------EGIEDAIVGKRKFQYEKEV-SKNPYNYDSWFDYLRLEESVGDKDRIRETYERA 348 (677)
T ss_pred HHHHHHHHHHHHh---cch--------hhhHHHHhhhhhhHHHHHH-HhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1111111111111 111 011222 23477888 889999999999999999999999999999999
Q ss_pred HhhhcCCch-HHH-----HHHHHHH---HHcCCHHHHHHHHHHHhhccCCCC--cHHHHHHHHHHHHHhCCHHHHHHHHH
Q 035707 468 LNLEARSNV-KGY-----LLLARVL---SAQKQFADAESVINDSLDQTGKWD--QGELLRTKAKLQIAQGRLKNAIETYV 536 (713)
Q Consensus 468 l~~~p~~~~-~~~-----~~la~~~---~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~la~~~~~~g~~~~A~~~~~ 536 (713)
+..-|.... ..| ..+-.++ ....+.+.+.++|+.++++-|+.. ...+|...|...+++.+...|.+.+-
T Consensus 349 Ianvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG 428 (677)
T KOG1915|consen 349 IANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILG 428 (677)
T ss_pred HccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 987765431 122 2222222 346899999999999999987532 34578888999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC
Q 035707 537 NLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKG 616 (713)
Q Consensus 537 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 616 (713)
.++...|. ..+......+-.++++++....+|++-++..|.+..+|...|.+-...|
T Consensus 429 ~AIG~cPK-----------------------~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lg 485 (677)
T KOG1915|consen 429 NAIGKCPK-----------------------DKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLG 485 (677)
T ss_pred HHhccCCc-----------------------hhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhh
Confidence 99999885 3555666777788999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHH--HHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-----HhC---
Q 035707 617 LQQEALVSFRKALDAEPNHVPSLV--SIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYK-----TYA--- 686 (713)
Q Consensus 617 ~~~eA~~~~~~al~~~p~~~~~~~--~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~-----~~g--- 686 (713)
+.+.|...|+-|++...-+.+-+. .....-...|.++ .|..+|++.++..+... +|...+..-. ..|
T Consensus 486 dtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~e--kaR~LYerlL~rt~h~k-vWisFA~fe~s~~~~~~~~~~ 562 (677)
T KOG1915|consen 486 DTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFE--KARALYERLLDRTQHVK-VWISFAKFEASASEGQEDEDL 562 (677)
T ss_pred hHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHH--HHHHHHHHHHHhcccch-HHHhHHHHhccccccccccch
Confidence 999999999999886544444333 3344445566665 99999999999877654 8888777655 344
Q ss_pred --------CCCHHHHHHHHHHHHccc
Q 035707 687 --------GASALEAVECFEAAALLE 704 (713)
Q Consensus 687 --------~~~~~~A~~~~~~a~~l~ 704 (713)
. ...|...|++|....
T Consensus 563 ~~~e~~~~~--~~~AR~iferAn~~~ 586 (677)
T KOG1915|consen 563 AELEITDEN--IKRARKIFERANTYL 586 (677)
T ss_pred hhhhcchhH--HHHHHHHHHHHHHHH
Confidence 4 678889999887643
No 82
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=1.4e-10 Score=114.97 Aligned_cols=423 Identities=9% Similarity=0.026 Sum_probs=305.6
Q ss_pred HhcCChhHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHhhcCCCCCCCcccccccccccCCchhHHHHHHHHHHHHHHH
Q 035707 215 KLAGDPDETILSYRRALLYYWNLDIETTARIEKKFAVFLLYSGTDASPPNLRLQMELSFVPRNNIEEAVLLLLILLKKIV 294 (713)
Q Consensus 215 ~~~g~~~eA~~~~~~al~~~~~~~~~~~~~i~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~eeA~~ll~~~~~~~~ 294 (713)
..++++..|.+.|.+||.. | .....+-..++.+-+...+ +..|..++ +.+
T Consensus 84 esq~e~~RARSv~ERALdv----d-~r~itLWlkYae~Emknk~--------------------vNhARNv~-----dRA 133 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDV----D-YRNITLWLKYAEFEMKNKQ--------------------VNHARNVW-----DRA 133 (677)
T ss_pred HhHHHHHHHHHHHHHHHhc----c-cccchHHHHHHHHHHhhhh--------------------HhHHHHHH-----HHH
Confidence 3567788888899998875 2 2333344445554333321 12222221 333
Q ss_pred hhcCCCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHH---hhcc------------cCCCChHHHH
Q 035707 295 LGKIEWDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALC---YLGE------------ENSDCNLELL 359 (713)
Q Consensus 295 l~~~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~---~~~~------------~~p~~~~~~~ 359 (713)
....|.....++.-..+--..|+..-+.+.|++-+.-.++.. .|...... |-.. .+| ++..++
T Consensus 134 vt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eq-aW~sfI~fElRykeieraR~IYerfV~~HP-~v~~wi 211 (677)
T KOG1915|consen 134 VTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQ-AWLSFIKFELRYKEIERARSIYERFVLVHP-KVSNWI 211 (677)
T ss_pred HHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHhhHHHHHHHHHHHHheecc-cHHHHH
Confidence 445677777888888888888999999999999888766544 34333322 1111 444 577889
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCC
Q 035707 360 VASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRER 439 (713)
Q Consensus 360 ~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~ 439 (713)
..++.-...|+.. -+...|.+|++....+ . .....+...+..- .++..++.|.-+|+-|+ ..-|.
T Consensus 212 kyarFE~k~g~~~-~aR~VyerAie~~~~d-~-~~e~lfvaFA~fE-----------e~qkE~ERar~iykyAl-d~~pk 276 (677)
T KOG1915|consen 212 KYARFEEKHGNVA-LARSVYERAIEFLGDD-E-EAEILFVAFAEFE-----------ERQKEYERARFIYKYAL-DHIPK 276 (677)
T ss_pred HHHHHHHhcCcHH-HHHHHHHHHHHHhhhH-H-HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH-HhcCc
Confidence 9999999999988 9999999999943332 2 1123333333333 67888999999999999 77777
Q ss_pred CH-H-HHHHHHHHHHHcCCH---HHHHH-----HHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC
Q 035707 440 DP-Y-IIYHLCLENAEQRKL---DVALY-----YAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKW 509 (713)
Q Consensus 440 ~~-~-~~~~la~~~~~~g~~---~~A~~-----~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 509 (713)
+- . .+-.....--+-|+. +.++- .|++.+..+|.+- ++|.....+....|+.+.-.+.|++|+..-|..
T Consensus 277 ~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nY-DsWfdylrL~e~~g~~~~Ire~yErAIanvpp~ 355 (677)
T KOG1915|consen 277 GRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNY-DSWFDYLRLEESVGDKDRIRETYERAIANVPPA 355 (677)
T ss_pred ccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCc-hHHHHHHHHHHhcCCHHHHHHHHHHHHccCCch
Confidence 62 2 222222222233443 33332 4777888999999 999999999999999999999999999887632
Q ss_pred CcHHH-------HHHHHH-HHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHC
Q 035707 510 DQGEL-------LRTKAK-LQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSL 581 (713)
Q Consensus 510 ~~~~~-------~~~la~-~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 581 (713)
..-.. |.+.+. .-....+.+.+.+.|+.++++.|.. ....+.+|...|....++
T Consensus 356 ~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHk------------------kFtFaKiWlmyA~feIRq 417 (677)
T KOG1915|consen 356 SEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHK------------------KFTFAKIWLMYAQFEIRQ 417 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcc------------------cchHHHHHHHHHHHHHHH
Confidence 22222 222221 1245688999999999999997643 455688999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHH
Q 035707 582 SQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFL 661 (713)
Q Consensus 582 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~ 661 (713)
.+...|...+-.++...|.+ ..+-....+-.+.++++.+..+|++-+...|.+-.+|...|.+-..+|+.+ .|...|
T Consensus 418 ~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lgdtd--RaRaif 494 (677)
T KOG1915|consen 418 LNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTD--RARAIF 494 (677)
T ss_pred cccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHH--HHHHHH
Confidence 99999999999999999965 445555566778899999999999999999999999999999999999998 999999
Q ss_pred HHHHhhCCCC-H-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCCC
Q 035707 662 TDALRLDRTN-T-TAWYNLGLLYKTYAGASALEAVECFEAAALLEESAP 708 (713)
Q Consensus 662 ~~al~~~p~~-~-~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~~ 708 (713)
+-|+....-+ | ..|-.....-...|. ++.|...|++.++..+..+
T Consensus 495 elAi~qp~ldmpellwkaYIdFEi~~~E--~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 495 ELAISQPALDMPELLWKAYIDFEIEEGE--FEKARALYERLLDRTQHVK 541 (677)
T ss_pred HHHhcCcccccHHHHHHHhhhhhhhcch--HHHHHHHHHHHHHhcccch
Confidence 9988754322 3 345666777778999 9999999999998776544
No 83
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.60 E-value=8.4e-14 Score=136.57 Aligned_cols=190 Identities=9% Similarity=-0.083 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 035707 477 KGYLLLARVLSAQKQFADAESVINDSLDQTGKWD-QGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNL 555 (713)
Q Consensus 477 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 555 (713)
..++.+|..+...|++++|+..+++++...|... ...+++.+|.++...|++++|+..|+++++..|++
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~---------- 103 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNH---------- 103 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC----------
Confidence 5666666666666666666666666666665211 12355666666666666666666666666665543
Q ss_pred hhhcccCCCccHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 035707 556 VKNRQNHDRSLEMETWHDLANVYTSL--------SQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRK 627 (713)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 627 (713)
+....+++.+|.++... |++++|+..|++++..+|++..++..+..+....+ ..
T Consensus 104 ---------~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~~----- 165 (235)
T TIGR03302 104 ---------PDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----RL----- 165 (235)
T ss_pred ---------CchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----HH-----
Confidence 22344566666666654 55666666666666666665444332222211100 00
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccc
Q 035707 628 ALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTN---TTAWYNLGLLYKTYAGASALEAVECFEAAALLE 704 (713)
Q Consensus 628 al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~ 704 (713)
......+|.++...|++. +|+..+++++...|++ +.+++.+|.++...|+ +++|..+++......
T Consensus 166 --------~~~~~~~a~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~--~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 166 --------AGKELYVARFYLKRGAYV--AAINRFETVVENYPDTPATEEALARLVEAYLKLGL--KDLAQDAAAVLGANY 233 (235)
T ss_pred --------HHHHHHHHHHHHHcCChH--HHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhC
Confidence 112347788999999997 9999999999997764 5899999999999999 999999998887765
Q ss_pred cC
Q 035707 705 ES 706 (713)
Q Consensus 705 p~ 706 (713)
|+
T Consensus 234 ~~ 235 (235)
T TIGR03302 234 PD 235 (235)
T ss_pred CC
Confidence 53
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.60 E-value=1.7e-12 Score=136.24 Aligned_cols=317 Identities=12% Similarity=-0.048 Sum_probs=222.5
Q ss_pred CCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHhcCCChHHHHHH
Q 035707 299 EWDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICAENKVCIEEGITY 378 (713)
Q Consensus 299 ~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~~A~~~ 378 (713)
|+.+..+..++..+...|+.+.+.+.+.++..... .+++........+.++...|++. +|...
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~e~~~~~a~~~~~~g~~~-~A~~~ 65 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALA----------------ARATERERAHVEALSAWIAGDLP-KALAL 65 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhc----------------cCCCHHHHHHHHHHHHHHcCCHH-HHHHH
Confidence 56677778888888888888887776666543322 12344566777888999999999 99999
Q ss_pred HHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 035707 379 ARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLD 458 (713)
Q Consensus 379 ~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~ 458 (713)
+++++. ..|.+. .++.. +..+...+.. .+....+...+.... ..+|.....+..+|.++..+|+++
T Consensus 66 ~~~~l~-~~P~~~----~a~~~-~~~~~~~~~~-------~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~ 131 (355)
T cd05804 66 LEQLLD-DYPRDL----LALKL-HLGAFGLGDF-------SGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYD 131 (355)
T ss_pred HHHHHH-HCCCcH----HHHHH-hHHHHHhccc-------ccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHH
Confidence 999999 788877 55554 4454333322 234455555555544 566777778888999999999999
Q ss_pred HHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc--HHHHHHHHHHHHHhCCHHHHHHHHH
Q 035707 459 VALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQ--GELLRTKAKLQIAQGRLKNAIETYV 536 (713)
Q Consensus 459 ~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~~~la~~~~~~g~~~~A~~~~~ 536 (713)
+|+..++++++..|++. .++..+|.++...|++++|+.++++++...|.... ...+..++.++...|++++|+..|+
T Consensus 132 ~A~~~~~~al~~~p~~~-~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~ 210 (355)
T cd05804 132 RAEEAARRALELNPDDA-WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYD 210 (355)
T ss_pred HHHHHHHHHHhhCCCCc-HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999998 99999999999999999999999999998763222 2356789999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHH--HHHHHHHHHHCCCHHHHHHH---HHHHHhcCCC--ChhHHHHHH
Q 035707 537 NLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMET--WHDLANVYTSLSQWRDAEVC---LSKSKAINPY--SASGWHSTG 609 (713)
Q Consensus 537 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~---~~~al~~~p~--~~~~~~~lg 609 (713)
+++...|.. +..... ...+...+...|....+... ........|. ........+
T Consensus 211 ~~~~~~~~~-------------------~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a 271 (355)
T cd05804 211 THIAPSAES-------------------DPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAA 271 (355)
T ss_pred HHhccccCC-------------------ChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHH
Confidence 986554311 000111 10222333334432222222 1111111121 222334577
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhC
Q 035707 610 LLYEAKGLQQEALVSFRKALDAEPN---------HVPSLVSIARVLRQIGGESMATIRCFLTDALRLD 668 (713)
Q Consensus 610 ~~~~~~g~~~eA~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~ 668 (713)
.++...|+.++|...++........ .+......+.++...|+++ +|+..+..++...
T Consensus 272 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~--~A~~~L~~al~~a 337 (355)
T cd05804 272 LALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYA--TALELLGPVRDDL 337 (355)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHH--HHHHHHHHHHHHH
Confidence 8888999999999999887653321 2456677888999999987 9999999988653
No 85
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=1.2e-10 Score=111.15 Aligned_cols=441 Identities=15% Similarity=0.064 Sum_probs=272.6
Q ss_pred ccCcccccCCCCChHHHhhhhhhhccCCHH---HHHHHhhhHhhhcCCHHHHHhhhhcCCccccchhhhhhhhhhccccc
Q 035707 55 RAGEMDAKVDNSNIEEAESSLRESGYLNYE---EARALLGRLEFQKGNIEAALHVFEGIDVAAVTSRMKVSLSRRCDQNR 131 (713)
Q Consensus 55 ~~~~~~~~~~~~~~~~A~~~l~~~l~~~~~---~a~~llg~~~~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (713)
+..+-+..+.+.||..|.+.|.-.+.++.+ +....+|..+|..|||++|+.+|.-+....-.+
T Consensus 25 K~P~Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~-------------- 90 (557)
T KOG3785|consen 25 KMPELEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAP-------------- 90 (557)
T ss_pred cCchHHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCC--------------
Confidence 344557778888999999998888876632 457789999999999999999998552111000
Q ss_pred cCCCCCCCCCcchhHHHHHHHHHHHhhhhhhccCchHHHHHHHHHH---------HHHHHHhcCCCCCCCCCc-ccchHH
Q 035707 132 RRSQSDAAPPMSMHAVSLLVEAIFLKTKSLQGLGRFEEACQSCKVI---------LDTVEHALPEGLPGNHSI-DCKLQE 201 (713)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~g~~~eA~~~~~~~---------l~~~~~~~~~~~~~~~~~-~~~~~~ 201 (713)
+|....++-|.+-+|.|.||.+.-.++ +=.+.-.+ |.-..+.. +..+++
T Consensus 91 -------------------~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahkl--ndEk~~~~fh~~LqD 149 (557)
T KOG3785|consen 91 -------------------AELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKL--NDEKRILTFHSSLQD 149 (557)
T ss_pred -------------------cccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh--CcHHHHHHHHHHHhh
Confidence 133445577888888999987654421 11110000 00000000 014455
Q ss_pred HHHHHHHHhHHHHHhcCChhHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHhhcCCCCCCCcccccccccccCCchhHH
Q 035707 202 TLNKAVELLPELYKLAGDPDETILSYRRALLYYWNLDIETTARIEKKFAVFLLYSGTDASPPNLRLQMELSFVPRNNIEE 281 (713)
Q Consensus 202 ~~~~a~~~l~~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~i~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ee 281 (713)
+...-+.+.+.-|++ -.|+|||..|.+.+..+++ +..+..-+|.. +. +-+-+.-
T Consensus 150 ~~EdqLSLAsvhYmR-~HYQeAIdvYkrvL~dn~e-----y~alNVy~ALC--yy------------------KlDYydv 203 (557)
T KOG3785|consen 150 TLEDQLSLASVHYMR-MHYQEAIDVYKRVLQDNPE-----YIALNVYMALC--YY------------------KLDYYDV 203 (557)
T ss_pred hHHHHHhHHHHHHHH-HHHHHHHHHHHHHHhcChh-----hhhhHHHHHHH--HH------------------hcchhhh
Confidence 555555544444444 5699999999999976433 33332222322 11 1111222
Q ss_pred HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcc------------
Q 035707 282 AVLLLLILLKKIVLGKIEWDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGE------------ 349 (713)
Q Consensus 282 A~~ll~~~~~~~~l~~~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~------------ 349 (713)
+-.+ .+.++++.|+.+.+.+..+-.+.+.=+-..+.....++....... +..+.-.++.
T Consensus 204 sqev-----l~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~~f~~~l~rHNLVvFrngEgAL 274 (557)
T KOG3785|consen 204 SQEV-----LKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----YPFIEYLCRHNLVVFRNGEGAL 274 (557)
T ss_pred HHHH-----HHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----chhHHHHHHcCeEEEeCCccHH
Confidence 2222 367788999999888888877666544444444444443322211 1111111111
Q ss_pred -cCC----CChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHH
Q 035707 350 -ENS----DCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQ 424 (713)
Q Consensus 350 -~~p----~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~ 424 (713)
.-| .-|++.+.+..-++++++.. +|+.+.+. ++|..+ .-+...|.++...|+...+ .....-
T Consensus 275 qVLP~L~~~IPEARlNL~iYyL~q~dVq-eA~~L~Kd----l~PttP----~EyilKgvv~aalGQe~gS----reHlKi 341 (557)
T KOG3785|consen 275 QVLPSLMKHIPEARLNLIIYYLNQNDVQ-EAISLCKD----LDPTTP----YEYILKGVVFAALGQETGS----REHLKI 341 (557)
T ss_pred HhchHHHhhChHhhhhheeeecccccHH-HHHHHHhh----cCCCCh----HHHHHHHHHHHHhhhhcCc----HHHHHH
Confidence 112 24778888888888999999 99988765 678877 7777788887544443111 122334
Q ss_pred HHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 035707 425 ALVALETAEKTM--RERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDS 502 (713)
Q Consensus 425 A~~~~~~al~~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 502 (713)
|.+.|+-.- .. ..+.....-.++.+++-..++++.+.++...-.-.-++. ...+.++......|++.+|++.|-+.
T Consensus 342 AqqffqlVG-~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD-~Fn~N~AQAk~atgny~eaEelf~~i 419 (557)
T KOG3785|consen 342 AQQFFQLVG-ESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDD-DFNLNLAQAKLATGNYVEAEELFIRI 419 (557)
T ss_pred HHHHHHHhc-ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-hhhhHHHHHHHHhcChHHHHHHHhhh
Confidence 444444222 11 122333456788888888899999988887766666666 77888999999999999999999776
Q ss_pred hhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCC
Q 035707 503 LDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLS 582 (713)
Q Consensus 503 l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 582 (713)
-...-+ +.......+|++|...++++-|...+-+.-. .......+..++..+...+
T Consensus 420 s~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t-----------------------~~e~fsLLqlIAn~CYk~~ 475 (557)
T KOG3785|consen 420 SGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT-----------------------PSERFSLLQLIANDCYKAN 475 (557)
T ss_pred cChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC-----------------------chhHHHHHHHHHHHHHHHH
Confidence 544321 3445567889999999999998887654211 1233555666788888888
Q ss_pred CHHHHHHHHHHHHhcCCCChhHH
Q 035707 583 QWRDAEVCLSKSKAINPYSASGW 605 (713)
Q Consensus 583 ~~~~A~~~~~~al~~~p~~~~~~ 605 (713)
++--|.+.|...-.++| +++-|
T Consensus 476 eFyyaaKAFd~lE~lDP-~pEnW 497 (557)
T KOG3785|consen 476 EFYYAAKAFDELEILDP-TPENW 497 (557)
T ss_pred HHHHHHHhhhHHHccCC-Ccccc
Confidence 88888888888877787 44444
No 86
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.56 E-value=4.9e-13 Score=131.15 Aligned_cols=187 Identities=12% Similarity=0.005 Sum_probs=148.9
Q ss_pred hHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 035707 393 MASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDP---YIIYHLCLENAEQRKLDVALYYAKKLLN 469 (713)
Q Consensus 393 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~ 469 (713)
.....++.+|..+ ...|++++|+..|++++ ...|+++ .+++.+|.++...|++++|+..++++++
T Consensus 31 ~~~~~~~~~g~~~-----------~~~~~~~~A~~~~~~~~-~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~ 98 (235)
T TIGR03302 31 WPAEELYEEAKEA-----------LDSGDYTEAIKYFEALE-SRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR 98 (235)
T ss_pred CCHHHHHHHHHHH-----------HHcCCHHHHHHHHHHHH-HhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3348889999999 78889999999999999 9998876 5789999999999999999999999999
Q ss_pred hhcCCchH---HHHHHHHHHHHc--------CCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 035707 470 LEARSNVK---GYLLLARVLSAQ--------KQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNL 538 (713)
Q Consensus 470 ~~p~~~~~---~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 538 (713)
..|+++ . +++.+|.++... |++++|+..+++++..+| .+...+..+..+.. .
T Consensus 99 ~~p~~~-~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~a~~~~~~--------------~ 161 (235)
T TIGR03302 99 LHPNHP-DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP--NSEYAPDAKKRMDY--------------L 161 (235)
T ss_pred HCcCCC-chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC--CChhHHHHHHHHHH--------------H
Confidence 999877 5 688899998876 789999999999999988 44433322211111 0
Q ss_pred HHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHc
Q 035707 539 LAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYS---ASGWHSTGLLYEAK 615 (713)
Q Consensus 539 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~ 615 (713)
... .......+|.+|...|++.+|+..+++++...|++ +.+++.+|.++...
T Consensus 162 ~~~-------------------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~l 216 (235)
T TIGR03302 162 RNR-------------------------LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKL 216 (235)
T ss_pred HHH-------------------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHc
Confidence 000 02234578888999999999999999999987764 57899999999999
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 035707 616 GLQQEALVSFRKALDAEP 633 (713)
Q Consensus 616 g~~~eA~~~~~~al~~~p 633 (713)
|++++|..+++......|
T Consensus 217 g~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 217 GLKDLAQDAAAVLGANYP 234 (235)
T ss_pred CCHHHHHHHHHHHHhhCC
Confidence 999999998888776555
No 87
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.55 E-value=1.4e-13 Score=122.23 Aligned_cols=114 Identities=11% Similarity=-0.006 Sum_probs=105.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 035707 571 WHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIG 650 (713)
Q Consensus 571 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g 650 (713)
+..+|.++...|++++|+.+|++++..+|.+..+|..+|.++...|++++|+..|++++.++|+++.+++++|.++...|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 55789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q 035707 651 GESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYA 686 (713)
Q Consensus 651 ~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 686 (713)
+++ +|+..|++++++.|+++..|.++|.+....+
T Consensus 107 ~~~--eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 107 EPG--LAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred CHH--HHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 997 9999999999999999999999888876543
No 88
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.55 E-value=9.9e-11 Score=124.43 Aligned_cols=463 Identities=13% Similarity=0.012 Sum_probs=258.9
Q ss_pred HHHHHhhhhhhccCchHHHHHHHHHHHHHHHHhcCCCCCCCCCcccchHHHHHHHHHHhHHHHHhcCChhHHHHHHHHHh
Q 035707 152 EAIFLKTKSLQGLGRFEEACQSCKVILDTVEHALPEGLPGNHSIDCKLQETLNKAVELLPELYKLAGDPDETILSYRRAL 231 (713)
Q Consensus 152 e~~~~~~~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~~~~al 231 (713)
|++..+..++...|++++|...+...... ..| -...++..+.++.+.|++++|...|+..+
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~--------I~D-----------k~~~~E~rA~ll~kLg~~~eA~~~y~~Li 65 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQ--------ILD-----------KLAVLEKRAELLLKLGRKEEAEKIYRELI 65 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhh--------CCC-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 67778888999999999998877653321 111 12367889999999999999999999999
Q ss_pred cccCCCChhHHHHHHHHHHHHHhhcCCCCCCCcccccccccccCCchhHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHH
Q 035707 232 LYYWNLDIETTARIEKKFAVFLLYSGTDASPPNLRLQMELSFVPRNNIEEAVLLLLILLKKIVLGKIEWDPSIIDHLSFA 311 (713)
Q Consensus 232 ~~~~~~~~~~~~~i~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~eeA~~ll~~~~~~~~l~~~~~~~~~~~~l~~a 311 (713)
..+|+ ...+-. .+...+.... . ...+..+.-..++ +......|....+.... ..
T Consensus 66 ~rNPd--n~~Yy~---~L~~~~g~~~-~--------------~~~~~~~~~~~~y-----~~l~~~yp~s~~~~rl~-L~ 119 (517)
T PF12569_consen 66 DRNPD--NYDYYR---GLEEALGLQL-Q--------------LSDEDVEKLLELY-----DELAEKYPRSDAPRRLP-LD 119 (517)
T ss_pred HHCCC--cHHHHH---HHHHHHhhhc-c--------------cccccHHHHHHHH-----HHHHHhCccccchhHhh-cc
Confidence 98643 333211 1111110000 0 0111222222222 33444555543332221 11
Q ss_pred HHhcCcHH-HHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhh----
Q 035707 312 LSVSGELW-TLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICAENKVCIEEGITYARKALSML---- 386 (713)
Q Consensus 312 ~~~~g~~~-~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~---- 386 (713)
+..-..+. .+..++...+..+ -|.....+-.+|....... -...++...+...
T Consensus 120 ~~~g~~F~~~~~~yl~~~l~Kg---------------------vPslF~~lk~Ly~d~~K~~-~i~~l~~~~~~~l~~~~ 177 (517)
T PF12569_consen 120 FLEGDEFKERLDEYLRPQLRKG---------------------VPSLFSNLKPLYKDPEKAA-IIESLVEEYVNSLESNG 177 (517)
T ss_pred cCCHHHHHHHHHHHHHHHHhcC---------------------CchHHHHHHHHHcChhHHH-HHHHHHHHHHHhhcccC
Confidence 11112232 2223333333221 1122222222222111111 1112222222111
Q ss_pred --------hccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 035707 387 --------QGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLD 458 (713)
Q Consensus 387 --------~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~ 458 (713)
....+....++++.++..| ...|++++|+.+.++++ ...|..++.++..|.++-+.|++.
T Consensus 178 ~~~~~~~~~~~~p~~~lw~~~~lAqhy-----------d~~g~~~~Al~~Id~aI-~htPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 178 SFSNGDDEEKEPPSTLLWTLYFLAQHY-----------DYLGDYEKALEYIDKAI-EHTPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred CCCCccccccCCchHHHHHHHHHHHHH-----------HHhCCHHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHCCCHH
Confidence 1122333457889999999 88999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC-Cc------HHHHHHHHHHHHHhCCHHHH
Q 035707 459 VALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKW-DQ------GELLRTKAKLQIAQGRLKNA 531 (713)
Q Consensus 459 ~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~------~~~~~~la~~~~~~g~~~~A 531 (713)
+|...++.+..+++.+- ......+..+.+.|+.++|...+..-...+..+ .+ .......|.+|.+.|++..|
T Consensus 246 ~Aa~~~~~Ar~LD~~DR-yiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~A 324 (517)
T PF12569_consen 246 EAAEAMDEARELDLADR-YINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLA 324 (517)
T ss_pred HHHHHHHHHHhCChhhH-HHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999887 777788889999999999999998876654211 11 22345678999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhh--------------hhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q 035707 532 IETYVNLLAVLQFRKKSFSAGKNL--------------VKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAI 597 (713)
Q Consensus 532 ~~~~~~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 597 (713)
+..|..+.+......+....-... .-......+|....+......+|+.+.+-......-..-...
T Consensus 325 Lk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~ 404 (517)
T PF12569_consen 325 LKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADN 404 (517)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCccccccccccccc
Confidence 999999988754432211110000 000112222333333333333333322211110000000000
Q ss_pred CCCChh---HHHHHHHHHHHcCCHHHHHHHHHH-H----------Hh--cCCCCHHHHHHHHHHHHHhcCCChHHHHHHH
Q 035707 598 NPYSAS---GWHSTGLLYEAKGLQQEALVSFRK-A----------LD--AEPNHVPSLVSIARVLRQIGGESMATIRCFL 661 (713)
Q Consensus 598 ~p~~~~---~~~~lg~~~~~~g~~~eA~~~~~~-a----------l~--~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~ 661 (713)
.+.++. -......--.....-+++...-.+ . -. ..+.+.+ -.|.-+....++ +++|.+++
T Consensus 405 ~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~D---p~GekL~~t~dP-Le~A~kfl 480 (517)
T PF12569_consen 405 ENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDD---PLGEKLLKTEDP-LEEAMKFL 480 (517)
T ss_pred ccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCC---ccHHHHhcCCcH-HHHHHHHH
Confidence 000000 000001000111111111111100 0 00 0011111 234444444443 67999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 035707 662 TDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAA 700 (713)
Q Consensus 662 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a 700 (713)
+-.+...|++...|..--.+|.+.|+ +--|+.++.+|
T Consensus 481 ~pL~~~a~~~~et~~laFeVy~Rk~K--~LLaLqaL~kA 517 (517)
T PF12569_consen 481 KPLLELAPDNIETHLLAFEVYLRKGK--YLLALQALKKA 517 (517)
T ss_pred HHHHHhCccchhhHHHHhHHHHhcCc--HHHHHHHHHhC
Confidence 99999999999999999999999999 99999988764
No 89
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.54 E-value=7.7e-11 Score=115.14 Aligned_cols=300 Identities=13% Similarity=-0.005 Sum_probs=225.7
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhh
Q 035707 357 ELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTM 436 (713)
Q Consensus 357 ~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 436 (713)
..+.-|..-+..|+|. +|.....+.-+ ..+... .++..-+..- .+.|+.+.+-.++.++. +.
T Consensus 86 ~~~~egl~~l~eG~~~-qAEkl~~rnae-~~e~p~----l~~l~aA~AA-----------~qrgd~~~an~yL~eaa-e~ 147 (400)
T COG3071 86 KALNEGLLKLFEGDFQ-QAEKLLRRNAE-HGEQPV----LAYLLAAEAA-----------QQRGDEDRANRYLAEAA-EL 147 (400)
T ss_pred HHHHHHHHHHhcCcHH-HHHHHHHHhhh-cCcchH----HHHHHHHHHH-----------HhcccHHHHHHHHHHHh-cc
Confidence 3445556677899999 99999988766 233322 4444444555 67899999999999998 77
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHH-
Q 035707 437 RER-DPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGEL- 514 (713)
Q Consensus 437 ~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~- 514 (713)
.++ .......++.....+|+++.|.....++++..|.++ .+......+|...|++.+...++.+.-+..-- .+.+.
T Consensus 148 ~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~-~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l-~~~e~~ 225 (400)
T COG3071 148 AGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHP-EVLRLALRAYIRLGAWQALLAILPKLRKAGLL-SDEEAA 225 (400)
T ss_pred CCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCCh-HHHHHHHHHHHHhccHHHHHHHHHHHHHccCC-ChHHHH
Confidence 443 455778889999999999999999999999999999 99999999999999999999999888776531 12221
Q ss_pred -HHHHHH--HHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHH
Q 035707 515 -LRTKAK--LQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCL 591 (713)
Q Consensus 515 -~~~la~--~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 591 (713)
+-..+. ++...++-..+.. +..-.+..|.. ...++.+...++.-+..+|+.++|.+..
T Consensus 226 ~le~~a~~glL~q~~~~~~~~g-L~~~W~~~pr~------------------lr~~p~l~~~~a~~li~l~~~~~A~~~i 286 (400)
T COG3071 226 RLEQQAWEGLLQQARDDNGSEG-LKTWWKNQPRK------------------LRNDPELVVAYAERLIRLGDHDEAQEII 286 (400)
T ss_pred HHHHHHHHHHHHHHhccccchH-HHHHHHhccHH------------------hhcChhHHHHHHHHHHHcCChHHHHHHH
Confidence 111111 1112222222222 22223322221 1234777888899999999999999999
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC
Q 035707 592 SKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTN 671 (713)
Q Consensus 592 ~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~ 671 (713)
+++++..-+ +.....++. ..-+++..=++..++.++..|+++..+..+|.++.+.+.+. +|..+|+.++...|+
T Consensus 287 ~~~Lk~~~D-~~L~~~~~~--l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~--kA~~~leaAl~~~~s- 360 (400)
T COG3071 287 EDALKRQWD-PRLCRLIPR--LRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWG--KASEALEAALKLRPS- 360 (400)
T ss_pred HHHHHhccC-hhHHHHHhh--cCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHH--HHHHHHHHHHhcCCC-
Confidence 999987653 333333332 35678888899999999999999999999999999999997 999999999998775
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcc
Q 035707 672 TTAWYNLGLLYKTYAGASALEAVECFEAAALL 703 (713)
Q Consensus 672 ~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l 703 (713)
...|..+|.++.+.|+ ..+|.++++.++.+
T Consensus 361 ~~~~~~la~~~~~~g~--~~~A~~~r~e~L~~ 390 (400)
T COG3071 361 ASDYAELADALDQLGE--PEEAEQVRREALLL 390 (400)
T ss_pred hhhHHHHHHHHHHcCC--hHHHHHHHHHHHHH
Confidence 5678899999999999 99999999999864
No 90
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.53 E-value=9e-14 Score=123.55 Aligned_cols=117 Identities=20% Similarity=0.191 Sum_probs=110.4
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 035707 587 AEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALR 666 (713)
Q Consensus 587 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~ 666 (713)
-..+|+++++++|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|+++ +|+..|++++.
T Consensus 12 ~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~--~A~~~y~~Al~ 86 (144)
T PRK15359 12 PEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYT--TAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHH--HHHHHHHHHHh
Confidence 356789999999875 6678999999999999999999999999999999999999999999998 99999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCCCCC
Q 035707 667 LDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALLEESAPVE 710 (713)
Q Consensus 667 ~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~~~~ 710 (713)
++|+++.+|+++|.++...|+ +++|+..|++++.+.|+++..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~--~~eAi~~~~~Al~~~p~~~~~ 128 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGE--PGLAREAFQTAIKMSYADASW 128 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCChHH
Confidence 999999999999999999999 999999999999999998753
No 91
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=4.8e-12 Score=115.75 Aligned_cols=185 Identities=19% Similarity=0.245 Sum_probs=164.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHH
Q 035707 438 ERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRT 517 (713)
Q Consensus 438 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 517 (713)
++....+-....+....|+.+-|..++++.....|++. .+....|..+...|++++|+++|+..++.+| .+..++..
T Consensus 49 ~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~-RV~~lkam~lEa~~~~~~A~e~y~~lL~ddp--t~~v~~KR 125 (289)
T KOG3060|consen 49 DEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSK-RVGKLKAMLLEATGNYKEAIEYYESLLEDDP--TDTVIRKR 125 (289)
T ss_pred chHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCh-hHHHHHHHHHHHhhchhhHHHHHHHHhccCc--chhHHHHH
Confidence 33344555567777889999999999999999999998 9999999999999999999999999999998 78888888
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q 035707 518 KAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAI 597 (713)
Q Consensus 518 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 597 (713)
..-+...+|+.-+||+.+...++..+.+ .++|..++.+|...|+|++|.-|+++++-+
T Consensus 126 KlAilka~GK~l~aIk~ln~YL~~F~~D----------------------~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 126 KLAILKAQGKNLEAIKELNEYLDKFMND----------------------QEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHhcCc----------------------HHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 8889999999999999999999986544 999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 035707 598 NPYSASGWHSTGLLYEAKG---LQQEALVSFRKALDAEPNHVPSLVSIARVLR 647 (713)
Q Consensus 598 ~p~~~~~~~~lg~~~~~~g---~~~eA~~~~~~al~~~p~~~~~~~~la~~~~ 647 (713)
.|.++..+..+|.+++.+| +..-|.++|.++++++|.+..+++.+-.+..
T Consensus 184 ~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~ 236 (289)
T KOG3060|consen 184 QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGS 236 (289)
T ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHH
Confidence 9999999999999998877 5778999999999999988887776654443
No 92
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=1.6e-10 Score=117.89 Aligned_cols=402 Identities=13% Similarity=0.018 Sum_probs=231.4
Q ss_pred cccCCchhHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcc--
Q 035707 272 SFVPRNNIEEAVLLLLILLKKIVLGKIEWDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGE-- 349 (713)
Q Consensus 272 ~~~~~~~~eeA~~ll~~~~~~~~l~~~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~-- 349 (713)
.+...+.+++|+..- ...+...|+++.++..-..++...++|+.|.+..+.-....... ...+.-+.|.++.
T Consensus 21 ~~~~~~e~e~a~k~~-----~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTA-----NKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNK 94 (652)
T ss_pred HhccchHHHHHHHHH-----HHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHccc
Confidence 355667888887653 56677889999999999999999999999997776543211111 1114556666655
Q ss_pred ----------cCCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHH
Q 035707 350 ----------ENSDCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRI 419 (713)
Q Consensus 350 ----------~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~ 419 (713)
.++.+...+.+.|.+++..++|+ +|..+|+..++ .+.++. +........- .
T Consensus 95 ~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~yd-ealdiY~~L~k-n~~dd~----d~~~r~nl~a-------------~ 155 (652)
T KOG2376|consen 95 LDEALKTLKGLDRLDDKLLELRAQVLYRLERYD-EALDIYQHLAK-NNSDDQ----DEERRANLLA-------------V 155 (652)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHhhHH-HHHHHHHHHHh-cCCchH----HHHHHHHHHH-------------H
Confidence 66777788899999999999999 99999999988 333333 2221111111 0
Q ss_pred hcHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc-----C--C-------chHHHHHHHH
Q 035707 420 LKQSQALVALETAEKTMRER-DPYIIYHLCLENAEQRKLDVALYYAKKLLNLEA-----R--S-------NVKGYLLLAR 484 (713)
Q Consensus 420 ~~~~~A~~~~~~al~~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-----~--~-------~~~~~~~la~ 484 (713)
+..-.+ . ..+.+ ...|. ..+.+|+.+.++...|+|.+|++.+++++++.. + + ...+...++.
T Consensus 156 ~a~l~~-~-~~q~v-~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlay 232 (652)
T KOG2376|consen 156 AAALQV-Q-LLQSV-PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAY 232 (652)
T ss_pred HHhhhH-H-HHHhc-cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHH
Confidence 000111 1 33334 34444 567889999999999999999999999954321 1 1 0125678899
Q ss_pred HHHHcCCHHHHHHHHHHHhhccCCCCcHH----HHHHHHHHHHHhCCHH-HHHHHHHHHHHHHhhh---------hhhhh
Q 035707 485 VLSAQKQFADAESVINDSLDQTGKWDQGE----LLRTKAKLQIAQGRLK-NAIETYVNLLAVLQFR---------KKSFS 550 (713)
Q Consensus 485 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~----~~~~la~~~~~~g~~~-~A~~~~~~~l~~~~~~---------~~~~~ 550 (713)
++..+|+..+|..+|...+..+|. +.. +.+++..+-....-++ .++..++......++. ...+.
T Consensus 233 VlQ~~Gqt~ea~~iy~~~i~~~~~--D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~ 310 (652)
T KOG2376|consen 233 VLQLQGQTAEASSIYVDIIKRNPA--DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIY 310 (652)
T ss_pred HHHHhcchHHHHHHHHHHHHhcCC--CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988763 221 1122221111111111 1111111111000000 00000
Q ss_pred -h----------hhhhhh--hcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHcC
Q 035707 551 -A----------GKNLVK--NRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYS-ASGWHSTGLLYEAKG 616 (713)
Q Consensus 551 -~----------~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g 616 (713)
+ ...+.+ .......|....--........+...+..|...+....+.+|.. ..+...++.+...+|
T Consensus 311 ~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~g 390 (652)
T KOG2376|consen 311 RNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQG 390 (652)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcC
Confidence 0 000000 01122222222212222222233336777788887777777766 566777778888888
Q ss_pred CHHHHHHHHHHHH--------hcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh-------CCCCHHHHHHHHHH
Q 035707 617 LQQEALVSFRKAL--------DAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRL-------DRTNTTAWYNLGLL 681 (713)
Q Consensus 617 ~~~eA~~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~-------~p~~~~~~~~lg~~ 681 (713)
+++.|++.+...+ +.. ..+.+...+-.++.+.++.+ .|...+.+++.- .+..-..|..++..
T Consensus 391 n~~~A~~il~~~~~~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~--~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f 467 (652)
T KOG2376|consen 391 NPEVALEILSLFLESWKSSILEAK-HLPGTVGAIVALYYKIKDND--SASAVLDSAIKWWRKQQTGSIALLSLMREAAEF 467 (652)
T ss_pred CHHHHHHHHHHHhhhhhhhhhhhc-cChhHHHHHHHHHHhccCCc--cHHHHHHHHHHHHHHhcccchHHHhHHHHHhHH
Confidence 8888888777322 211 11223333444455555555 455555555432 22222345556666
Q ss_pred HHHhCCCCHHHHHHHHHHHHccccCCC
Q 035707 682 YKTYAGASALEAVECFEAAALLEESAP 708 (713)
Q Consensus 682 ~~~~g~~~~~~A~~~~~~a~~l~p~~~ 708 (713)
..+.|+ .++|...+++.++.+|++.
T Consensus 468 ~lr~G~--~~ea~s~leel~k~n~~d~ 492 (652)
T KOG2376|consen 468 KLRHGN--EEEASSLLEELVKFNPNDT 492 (652)
T ss_pred HHhcCc--hHHHHHHHHHHHHhCCchH
Confidence 667788 8888888888888777653
No 93
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.52 E-value=3e-13 Score=126.88 Aligned_cols=126 Identities=22% Similarity=0.223 Sum_probs=117.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHhcCCChHHHHH
Q 035707 581 LSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVL-RQIGGESMATIRC 659 (713)
Q Consensus 581 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~l~~A~~ 659 (713)
.++.++++..++++++.+|+++..|..+|.+|...|++++|+..|+++++++|+++.++..+|.++ ...|++..++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 677899999999999999999999999999999999999999999999999999999999999975 6778752249999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCCC
Q 035707 660 FLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALLEESAP 708 (713)
Q Consensus 660 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~~ 708 (713)
.++++++.+|+++.+++.+|..+...|+ +++|+.+|++++++.|.+.
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~--~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQAD--YAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCCc
Confidence 9999999999999999999999999999 9999999999999988754
No 94
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=3e-11 Score=115.23 Aligned_cols=370 Identities=13% Similarity=-0.019 Sum_probs=219.2
Q ss_pred ccCCchhHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcc---
Q 035707 273 FVPRNNIEEAVLLLLILLKKIVLGKIEWDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGE--- 349 (713)
Q Consensus 273 ~~~~~~~eeA~~ll~~~~~~~~l~~~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~--- 349 (713)
+..+..++.|+.++..- .-+++ .+...+-..++.++.+.|+|++|...++-++.......+.|..++.|+.-.
T Consensus 32 fls~rDytGAislLefk---~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFK---LNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHhcccchhHHHHHHHh---hccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 45556778888776422 11122 123456677899999999999999999999988878888888888775422
Q ss_pred --------cCCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhc
Q 035707 350 --------ENSDCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILK 421 (713)
Q Consensus 350 --------~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~ 421 (713)
.-|+.+.-.-++-.+..+.++- +-+-.|..-+. ... .-...|+.++ ...-.
T Consensus 108 ~eA~~~~~ka~k~pL~~RLlfhlahklndE--k~~~~fh~~Lq-D~~-------EdqLSLAsvh-----------YmR~H 166 (557)
T KOG3785|consen 108 IEAKSIAEKAPKTPLCIRLLFHLAHKLNDE--KRILTFHSSLQ-DTL-------EDQLSLASVH-----------YMRMH 166 (557)
T ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhCcH--HHHHHHHHHHh-hhH-------HHHHhHHHHH-----------HHHHH
Confidence 4455543333333333333333 33333333333 011 2223344444 45567
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 035707 422 QSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVIND 501 (713)
Q Consensus 422 ~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 501 (713)
|.+|+++|.+.+ ..+|+....-..++.+|++..-|+-+.+.+.-.+...|+++ .+....+..+++.=+-.-|..-...
T Consensus 167 YQeAIdvYkrvL-~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSt-iA~NLkacn~fRl~ngr~ae~E~k~ 244 (557)
T KOG3785|consen 167 YQEAIDVYKRVL-QDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDST-IAKNLKACNLFRLINGRTAEDEKKE 244 (557)
T ss_pred HHHHHHHHHHHH-hcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcH-HHHHHHHHHHhhhhccchhHHHHHH
Confidence 799999999999 88887777778899999999999999999998899899888 7777777766654322222222222
Q ss_pred Hhhcc----------------------------CC--CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhh
Q 035707 502 SLDQT----------------------------GK--WDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSA 551 (713)
Q Consensus 502 al~~~----------------------------p~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 551 (713)
..+.. |. ..-+++..+++..|..+++..+|+...+. ++
T Consensus 245 ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~--------- 312 (557)
T KOG3785|consen 245 LADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD---LD--------- 312 (557)
T ss_pred HHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh---cC---------
Confidence 21111 00 00123445555555666666666554443 11
Q ss_pred hhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---c------CCCChhHHHHHHHHHHHcCCHHHHH
Q 035707 552 GKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKA---I------NPYSASGWHSTGLLYEAKGLQQEAL 622 (713)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~------~p~~~~~~~~lg~~~~~~g~~~eA~ 622 (713)
|..+.-+...|.+....|+--...+.++-+-+ + .-+.......++..++-..++++.+
T Consensus 313 -------------PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl 379 (557)
T KOG3785|consen 313 -------------PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVL 379 (557)
T ss_pred -------------CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHH
Confidence 22344455555555555544333333222211 1 1112223444555555556666666
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 035707 623 VSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTN-TTAWYNLGLLYKTYAGASALEAVECFE 698 (713)
Q Consensus 623 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~~~A~~~~~ 698 (713)
.++...-....++....++++.++...|.+. +|.+.|-+.-..+-.+ ......|+.+|...|. ++-|.+.|-
T Consensus 380 ~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~--eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkk--P~lAW~~~l 452 (557)
T KOG3785|consen 380 TYLNSIESYFTNDDDFNLNLAQAKLATGNYV--EAEELFIRISGPEIKNKILYKSMLARCYIRNKK--PQLAWDMML 452 (557)
T ss_pred HHHHHHHHHhcCcchhhhHHHHHHHHhcChH--HHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCC--chHHHHHHH
Confidence 6666655555566666777777788888876 7777775544333122 2333457788888888 777776663
No 95
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.52 E-value=1.1e-09 Score=112.78 Aligned_cols=369 Identities=12% Similarity=0.095 Sum_probs=270.9
Q ss_pred hhcCCCc-HHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCC--chhh-----------HHHHHHH---------------
Q 035707 295 LGKIEWD-PSIIDHLSFALSVSGELWTLAHQVEELLPGVMG--NKKR-----------YCTLALC--------------- 345 (713)
Q Consensus 295 l~~~~~~-~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~--~~~~-----------~~~la~~--------------- 345 (713)
+.+.++. -.++..|+.-|.+.|.++.|...|++++..... +... +....+-
T Consensus 240 i~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl 319 (835)
T KOG2047|consen 240 IRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDL 319 (835)
T ss_pred cccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhH
Confidence 3444443 467888999999999999999999988654321 1100 0000000
Q ss_pred ----------------hhcc----cCCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcc-hHHHHHHHHHHH
Q 035707 346 ----------------YLGE----ENSDCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQ-MASIANCLLGVL 404 (713)
Q Consensus 346 ----------------~~~~----~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~-~~~~a~~~lg~~ 404 (713)
|... .+|+++..|+....+ ..|+.. +-+..|.++++..+|.-.. -....+..+|..
T Consensus 320 ~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~-~~i~tyteAv~~vdP~ka~Gs~~~Lw~~fakl 396 (835)
T KOG2047|consen 320 ELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAA-EQINTYTEAVKTVDPKKAVGSPGTLWVEFAKL 396 (835)
T ss_pred HHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChH-HHHHHHHHHHHccCcccCCCChhhHHHHHHHH
Confidence 0000 788888888877654 477788 8899999999877776542 235778889999
Q ss_pred HhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC-------
Q 035707 405 LSSQSRSVVSDSKRILKQSQALVALETAEKTMRERD----PYIIYHLCLENAEQRKLDVALYYAKKLLNLEAR------- 473 (713)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------- 473 (713)
| ...|+.+.|...|+++. +..-.. ..+|...|..-.+..+++.|+++.+++...-..
T Consensus 397 Y-----------e~~~~l~~aRvifeka~-~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd 464 (835)
T KOG2047|consen 397 Y-----------ENNGDLDDARVIFEKAT-KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYD 464 (835)
T ss_pred H-----------HhcCcHHHHHHHHHHhh-cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhc
Confidence 9 89999999999999999 665222 568889999999999999999999998753111
Q ss_pred --C--------chHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 035707 474 --S--------NVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQ 543 (713)
Q Consensus 474 --~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 543 (713)
. ....|..++......|-++....+|++++++.- -.+..-.+.|..+....-++++.+.|++.+.+.+
T Consensus 465 ~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri--aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk 542 (835)
T KOG2047|consen 465 NSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI--ATPQIIINYAMFLEEHKYFEESFKAYERGISLFK 542 (835)
T ss_pred CCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC
Confidence 0 114788889999999999999999999999865 5677788889999999999999999999888754
Q ss_pred hhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHcCCH
Q 035707 544 FRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTS---LSQWRDAEVCLSKSKAINPYS--ASGWHSTGLLYEAKGLQ 618 (713)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~ 618 (713)
.|...++|...-.-+.+ --+.+.|..+|+++++..|.. ...+...+.+-...|.-
T Consensus 543 --------------------~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLa 602 (835)
T KOG2047|consen 543 --------------------WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLA 602 (835)
T ss_pred --------------------CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHH
Confidence 35557777765444433 347899999999999988743 23566677888888999
Q ss_pred HHHHHHHHHHHhcCCC-CHHHHHH--HHHHHHHhcCCChHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHhCCCCHHHH
Q 035707 619 QEALVSFRKALDAEPN-HVPSLVS--IARVLRQIGGESMATIRCFLTDALRLDRTNT--TAWYNLGLLYKTYAGASALEA 693 (713)
Q Consensus 619 ~eA~~~~~~al~~~p~-~~~~~~~--la~~~~~~g~~~l~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~~~A 693 (713)
..|+..|+++-..-+. +--..++ +..+-.-.|-. .-+..|++|++.-|+.. ......+..-...|. .+.|
T Consensus 603 r~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~---~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGE--idRA 677 (835)
T KOG2047|consen 603 RHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVP---RTREIYEKAIESLPDSKAREMCLRFADLETKLGE--IDRA 677 (835)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCc---ccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhh--HHHH
Confidence 9999999998764432 2111111 22222333443 57889999999988754 345667899999999 9999
Q ss_pred HHHHHHHHcccc
Q 035707 694 VECFEAAALLEE 705 (713)
Q Consensus 694 ~~~~~~a~~l~p 705 (713)
...|.-+.++.|
T Consensus 678 RaIya~~sq~~d 689 (835)
T KOG2047|consen 678 RAIYAHGSQICD 689 (835)
T ss_pred HHHHHhhhhcCC
Confidence 999999888643
No 96
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.50 E-value=2.6e-11 Score=128.84 Aligned_cols=318 Identities=15% Similarity=0.047 Sum_probs=213.6
Q ss_pred hHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHH
Q 035707 355 NLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEK 434 (713)
Q Consensus 355 ~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 434 (713)
.+.++....++.+.|++. +|++++..... .-.+.. ...-..|.++ ...|++++|...|...+
T Consensus 4 SE~lLY~~~il~e~g~~~-~AL~~L~~~~~-~I~Dk~----~~~E~rA~ll-----------~kLg~~~eA~~~y~~Li- 65 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYE-EALEHLEKNEK-QILDKL----AVLEKRAELL-----------LKLGRKEEAEKIYRELI- 65 (517)
T ss_pred HHHHHHHHHHHHHCCCHH-HHHHHHHhhhh-hCCCHH----HHHHHHHHHH-----------HHcCCHHHHHHHHHHHH-
Confidence 455667777888888888 88888877665 333333 6667778888 77777888888888888
Q ss_pred hhCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHH-HHHHHHHhhccCC
Q 035707 435 TMRERDPYIIYHLCLENAEQR-----KLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADA-ESVINDSLDQTGK 508 (713)
Q Consensus 435 ~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~p~ 508 (713)
..+|+|...+..+..+..... +.+.-...|++.....|... +...+...+..-..|... ..++...+...
T Consensus 66 ~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~--~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kg-- 141 (517)
T PF12569_consen 66 DRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSD--APRRLPLDFLEGDEFKERLDEYLRPQLRKG-- 141 (517)
T ss_pred HHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCcccc--chhHhhcccCCHHHHHHHHHHHHHHHHhcC--
Confidence 888888887777777763332 45666777777777777643 222232222222233332 33334444332
Q ss_pred CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCcc-HHHHHHHHHHHHHHCCCHHHH
Q 035707 509 WDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSL-EMETWHDLANVYTSLSQWRDA 587 (713)
Q Consensus 509 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A 587 (713)
.+.++..+-.+|....+..-....+........... .+.... ......|. ...+++.++..|...|++++|
T Consensus 142 --vPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~-~~~~~~-----~~~~~~p~~~lw~~~~lAqhyd~~g~~~~A 213 (517)
T PF12569_consen 142 --VPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNG-SFSNGD-----DEEKEPPSTLLWTLYFLAQHYDYLGDYEKA 213 (517)
T ss_pred --CchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccC-CCCCcc-----ccccCCchHHHHHHHHHHHHHHHhCCHHHH
Confidence 334455555555433222222222222221110000 000000 00111122 246678899999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 035707 588 EVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRL 667 (713)
Q Consensus 588 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~ 667 (713)
+.+++++++..|..++.+...|.++...|++.+|...++.+..+++.+-..-...+..+.+.|+.+ +|...+....+.
T Consensus 214 l~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e--~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 214 LEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIE--EAEKTASLFTRE 291 (517)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHH--HHHHHHHhhcCC
Confidence 999999999999999999999999999999999999999999999999888888899999999987 999988776654
Q ss_pred C--CCC-----HHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHccccC
Q 035707 668 D--RTN-----TTAWYN--LGLLYKTYAGASALEAVECFEAAALLEES 706 (713)
Q Consensus 668 ~--p~~-----~~~~~~--lg~~~~~~g~~~~~~A~~~~~~a~~l~p~ 706 (713)
+ |.. .-.|+. -|.+|.+.|+ +..|+..|..+.+...+
T Consensus 292 ~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~--~~~ALk~~~~v~k~f~~ 337 (517)
T PF12569_consen 292 DVDPLSNLNDMQCMWFETECAEAYLRQGD--YGLALKRFHAVLKHFDD 337 (517)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHH
Confidence 4 211 125665 5999999999 99999999988876443
No 97
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.49 E-value=6e-12 Score=131.24 Aligned_cols=223 Identities=16% Similarity=0.127 Sum_probs=194.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHH
Q 035707 438 ERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRT 517 (713)
Q Consensus 438 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 517 (713)
|........++..+...|-...|+..|++. ..|-....||...|+..+|..+..+-++.+ .++..|..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek~---~d~~lyc~ 462 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEKD---PDPRLYCL 462 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcCC---CcchhHHH
Confidence 334455678999999999999999999886 677778889999999999999999999843 46777777
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q 035707 518 KAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAI 597 (713)
Q Consensus 518 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 597 (713)
+|.+.....-|++|.++.+..- ..+...+|......++|.++..+++..+++
T Consensus 463 LGDv~~d~s~yEkawElsn~~s----------------------------arA~r~~~~~~~~~~~fs~~~~hle~sl~~ 514 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYIS----------------------------ARAQRSLALLILSNKDFSEADKHLERSLEI 514 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhh----------------------------HHHHHhhccccccchhHHHHHHHHHHHhhc
Confidence 7777766666666666555422 345566777777789999999999999999
Q ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHH
Q 035707 598 NPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYN 677 (713)
Q Consensus 598 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~ 677 (713)
+|-....|+.+|.+..+.++++.|.++|..++.++|++..+|++++..|.+.|+.. +|...+++|++.+-++...|-|
T Consensus 515 nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~--ra~~~l~EAlKcn~~~w~iWEN 592 (777)
T KOG1128|consen 515 NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKK--RAFRKLKEALKCNYQHWQIWEN 592 (777)
T ss_pred CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhH--HHHHHHHHHhhcCCCCCeeeec
Confidence 99999999999999999999999999999999999999999999999999999987 9999999999999889999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHccc
Q 035707 678 LGLLYKTYAGASALEAVECFEAAALLE 704 (713)
Q Consensus 678 lg~~~~~~g~~~~~~A~~~~~~a~~l~ 704 (713)
.-.+..+.|. +++|+..|.+.+.+.
T Consensus 593 ymlvsvdvge--~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 593 YMLVSVDVGE--FEDAIKAYHRLLDLR 617 (777)
T ss_pred hhhhhhhccc--HHHHHHHHHHHHHhh
Confidence 9999999999 999999999998754
No 98
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.49 E-value=7.5e-11 Score=139.72 Aligned_cols=320 Identities=16% Similarity=0.053 Sum_probs=235.6
Q ss_pred ChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcc----CcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHH
Q 035707 354 CNLELLVASKICAENKVCIEEGITYARKALSMLQGK----CRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVAL 429 (713)
Q Consensus 354 ~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~----~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~ 429 (713)
++......+.++...|++. +|..++..+....... ...........++.++ ...|++++|...+
T Consensus 408 ~~~l~~~~a~~~~~~g~~~-~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~-----------~~~g~~~~A~~~~ 475 (903)
T PRK04841 408 NPRLVLLQAWLAQSQHRYS-EVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA-----------INDGDPEEAERLA 475 (903)
T ss_pred CcchHHHHHHHHHHCCCHH-HHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH-----------HhCCCHHHHHHHH
Confidence 3445566777888899999 9999999887632221 2223445566677777 6788999999999
Q ss_pred HHHHHhhCCCC-H----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCc-----hHHHHHHHHHHHHcCCHHHHHHHH
Q 035707 430 ETAEKTMRERD-P----YIIYHLCLENAEQRKLDVALYYAKKLLNLEARSN-----VKGYLLLARVLSAQKQFADAESVI 499 (713)
Q Consensus 430 ~~al~~~~p~~-~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~~la~~~~~~g~~~~A~~~~ 499 (713)
++++ ...+.. . .+...+|.++...|++++|...+++++....... ..++..++.++...|++++|...+
T Consensus 476 ~~al-~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~ 554 (903)
T PRK04841 476 ELAL-AELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQ 554 (903)
T ss_pred HHHH-hcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999 754432 2 3557788999999999999999999987643221 135667899999999999999999
Q ss_pred HHHhhccCC------CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHH
Q 035707 500 NDSLDQTGK------WDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHD 573 (713)
Q Consensus 500 ~~al~~~p~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (713)
++++..... +.....+..+|.++...|++++|...+++++...... . .......+..
T Consensus 555 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~----------------~-~~~~~~~~~~ 617 (903)
T PRK04841 555 EKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY----------------Q-PQQQLQCLAM 617 (903)
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc----------------C-chHHHHHHHH
Confidence 999886321 1123345678899999999999999999998875421 0 1223566778
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCC---hhHHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH----HHHHH
Q 035707 574 LANVYTSLSQWRDAEVCLSKSKAINPYS---ASGWH----STGLLYEAKGLQQEALVSFRKALDAEPNHVP----SLVSI 642 (713)
Q Consensus 574 la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~----~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~----~~~~l 642 (713)
++.++...|++++|...++++..+.+.. ..... .....+...|+.+.|..++.......+.... .+..+
T Consensus 618 la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 697 (903)
T PRK04841 618 LAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNI 697 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHH
Confidence 9999999999999999999997653322 11111 1224455688999999998776553322221 24678
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCC
Q 035707 643 ARVLRQIGGESMATIRCFLTDALRLDR------TNTTAWYNLGLLYKTYAGASALEAVECFEAAALLEESA 707 (713)
Q Consensus 643 a~~~~~~g~~~l~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~ 707 (713)
+.++...|+++ +|...+++++.... ....++..+|.++...|+ .++|..++++|+++....
T Consensus 698 a~~~~~~g~~~--~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~--~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 698 ARAQILLGQFD--EAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGR--KSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHcCCHH--HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHhCcc
Confidence 99999999987 99999999987531 223567889999999999 999999999999976543
No 99
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.45 E-value=5.3e-12 Score=139.10 Aligned_cols=139 Identities=6% Similarity=-0.059 Sum_probs=133.5
Q ss_pred CccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 035707 564 RSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIA 643 (713)
Q Consensus 564 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la 643 (713)
.+.++.++..||.+....|++++|+..++.++++.|++..++..++.++.+.+++++|+..+++++..+|+++.+++.+|
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 35669999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccC
Q 035707 644 RVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALLEES 706 (713)
Q Consensus 644 ~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~ 706 (713)
.++.+.|+++ +|+..|++++..+|+++.+|..+|.++...|+ .++|...|++|++...+
T Consensus 162 ~~l~~~g~~~--~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~--~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 162 KSWDEIGQSE--QADACFERLSRQHPEFENGYVGWAQSLTRRGA--LWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHHhcchH--HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhCc
Confidence 9999999998 99999999999999999999999999999999 99999999999987543
No 100
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=4.1e-11 Score=109.71 Aligned_cols=181 Identities=21% Similarity=0.179 Sum_probs=159.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 035707 477 KGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLV 556 (713)
Q Consensus 477 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 556 (713)
..+-.+..+....|+.+.|..+++...+..| ....+....|..+...|++++|+++|+..++-+|.+
T Consensus 53 ~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp--~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~----------- 119 (289)
T KOG3060|consen 53 TLYEQVFIAALDTGRDDLAQKCINQLRDRFP--GSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTD----------- 119 (289)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhCC--CChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcch-----------
Confidence 4455556667788999999999999998888 778888999999999999999999999999887655
Q ss_pred hhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 035707 557 KNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHV 636 (713)
Q Consensus 557 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 636 (713)
..++-....+...+|+.-+|++.+.+.++..+.+.++|..++.+|...|+|++|.-++++++-+.|.++
T Consensus 120 -----------~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~ 188 (289)
T KOG3060|consen 120 -----------TVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNP 188 (289)
T ss_pred -----------hHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcH
Confidence 666667777788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 035707 637 PSLVSIARVLRQIGGES-MATIRCFLTDALRLDRTNTTAWYNLGLL 681 (713)
Q Consensus 637 ~~~~~la~~~~~~g~~~-l~~A~~~~~~al~~~p~~~~~~~~lg~~ 681 (713)
..+..+|.+++-+|..+ ++-|+++|.+++++.|.+..+|+.+-.+
T Consensus 189 l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 189 LYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence 99999999988877643 4579999999999999888888765433
No 101
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.45 E-value=3.2e-12 Score=124.09 Aligned_cols=295 Identities=18% Similarity=0.125 Sum_probs=221.7
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhC--
Q 035707 360 VASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMR-- 437 (713)
Q Consensus 360 ~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-- 437 (713)
+-|.-+++.|++. .++.+|+.+++ ...++....+..|..||..| ...++|.+|+++-..-+ .+.
T Consensus 22 lEGERLck~gdcr-aGv~ff~aA~q-vGTeDl~tLSAIYsQLGNAy-----------fyL~DY~kAl~yH~hDl-tlar~ 87 (639)
T KOG1130|consen 22 LEGERLCKMGDCR-AGVDFFKAALQ-VGTEDLSTLSAIYSQLGNAY-----------FYLKDYEKALKYHTHDL-TLARL 87 (639)
T ss_pred HHHHHHHhccchh-hhHHHHHHHHH-hcchHHHHHHHHHHHhcchh-----------hhHhhHHHHHhhhhhhH-HHHHH
Confidence 3456678999999 99999999999 77777767778899999999 78888999988754333 221
Q ss_pred ----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC------CchHHHHHHHHHHHHcCC----------------
Q 035707 438 ----ERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEAR------SNVKGYLLLARVLSAQKQ---------------- 491 (713)
Q Consensus 438 ----p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~~la~~~~~~g~---------------- 491 (713)
-....+--++|..+--.|.|++|+.+..+-+..... .. .+++.+|.+|...|+
T Consensus 88 lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~-RAlYNlgnvYhakGk~~g~~~pee~g~f~~e 166 (639)
T KOG1130|consen 88 LGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLES-RALYNLGNVYHAKGKCTGLEAPEEKGAFNAE 166 (639)
T ss_pred hcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhh-HHHhhhhhhhhhcccccCCCChhhcccccHH
Confidence 123445568999999999999999998887765321 22 689999999988764
Q ss_pred ----HHHHHHHHHHHhhccCC----CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCC
Q 035707 492 ----FADAESVINDSLDQTGK----WDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHD 563 (713)
Q Consensus 492 ----~~~A~~~~~~al~~~p~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 563 (713)
++.|.++|..-+++..+ .....++-++|..|..+|+|++|+..-+.-+.+.... .+
T Consensus 167 v~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef----------------GD 230 (639)
T KOG1130|consen 167 VTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF----------------GD 230 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh----------------hh
Confidence 34455555555544321 1234567788889999999999999988888775532 23
Q ss_pred CccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCC--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----
Q 035707 564 RSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAI----NPY--SASGWHSTGLLYEAKGLQQEALVSFRKALDAE----- 632 (713)
Q Consensus 564 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~--~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~----- 632 (713)
....-.++.++|.++.-.|+++.|+++|++.+.+ ... .+...+.+|..|.-..++++|+.++.+-+.+.
T Consensus 231 rAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~D 310 (639)
T KOG1130|consen 231 RAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELED 310 (639)
T ss_pred HHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678999999999999999999999987643 222 35567889999999999999999999877653
Q ss_pred -CCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhC-----CC-CHHHHHHHHHHHHHhCC
Q 035707 633 -PNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLD-----RT-NTTAWYNLGLLYKTYAG 687 (713)
Q Consensus 633 -p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~-----p~-~~~~~~~lg~~~~~~g~ 687 (713)
.....+++.+|..+...|..+ +|+.+.++.+++. |. ...+..++...-...|.
T Consensus 311 riGe~RacwSLgna~~alg~h~--kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~ 370 (639)
T KOG1130|consen 311 RIGELRACWSLGNAFNALGEHR--KALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQ 370 (639)
T ss_pred hhhhHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCC
Confidence 234568899999999999987 9999888877642 22 23456677777777776
No 102
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.44 E-value=5.8e-12 Score=118.22 Aligned_cols=124 Identities=14% Similarity=0.139 Sum_probs=89.5
Q ss_pred hCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhH
Q 035707 525 QGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASG 604 (713)
Q Consensus 525 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 604 (713)
.++.++++..+++++..+|++ ...|..+|.+|...|++++|+.+|++++.++|+++.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~----------------------~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~ 109 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQN----------------------SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAEL 109 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCC----------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 455667777777777776544 7777777777777777777777777777777777777
Q ss_pred HHHHHHHH-HHcCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCH
Q 035707 605 WHSTGLLY-EAKGL--QQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNT 672 (713)
Q Consensus 605 ~~~lg~~~-~~~g~--~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~ 672 (713)
+..+|.++ ...|+ +++|...++++++.+|+++.++..+|..+...|+++ +|+.+++++++..|.+.
T Consensus 110 ~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~--~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 110 YAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYA--QAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHH--HHHHHHHHHHhhCCCCc
Confidence 77777753 55565 477777777777777777777777777777777776 77777777777766543
No 103
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.43 E-value=5.7e-08 Score=100.36 Aligned_cols=555 Identities=13% Similarity=0.050 Sum_probs=330.3
Q ss_pred hHHHhhhhhhhcc--CCHHHHHHHhhhHhhhcCCHHHHHhhhhcCCccccchhhh----hhhhhhccccccCCCCCCCCC
Q 035707 68 IEEAESSLRESGY--LNYEEARALLGRLEFQKGNIEAALHVFEGIDVAAVTSRMK----VSLSRRCDQNRRRSQSDAAPP 141 (713)
Q Consensus 68 ~~~A~~~l~~~l~--~~~~~a~~llg~~~~~~g~~~~Al~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 141 (713)
++.-...|+.++- -.-+-.|...+.....||+...--+.|+++. .++..... +...+-... ...|.
T Consensus 84 ~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrAL-raLpvtqH~rIW~lyl~Fv~~-------~~lPe 155 (835)
T KOG2047|consen 84 YESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRAL-RALPVTQHDRIWDLYLKFVES-------HGLPE 155 (835)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHH-HhCchHhhccchHHHHHHHHh-------CCChH
Confidence 5555566666663 2367778888888889999998888888641 11111000 000000000 00011
Q ss_pred cchhHHHHH----HHHHHHhhhhhhccCchHHHHHHHHHHHHHHHHhcCCC----------------CCCCCCcccchHH
Q 035707 142 MSMHAVSLL----VEAIFLKTKSLQGLGRFEEACQSCKVILDTVEHALPEG----------------LPGNHSIDCKLQE 201 (713)
Q Consensus 142 ~~~~~~~~~----~e~~~~~~~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~----------------~~~~~~~~~~~~~ 201 (713)
.++|..+-- .++.-.--..+.+.++.++|++.+..++...+-+...| .|+...+. +...
T Consensus 156 ts~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~sl-nvda 234 (835)
T KOG2047|consen 156 TSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSL-NVDA 234 (835)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhccc-CHHH
Confidence 122221110 11211113446678999999999997775332222111 11111110 2222
Q ss_pred HH-----------HHHHHHhHHHHHhcCChhHHHHHHHHHhcccCCCChhHHHHHHHHHHHH---HhhcCCC-C--CCCc
Q 035707 202 TL-----------NKAVELLPELYKLAGDPDETILSYRRALLYYWNLDIETTARIEKKFAVF---LLYSGTD-A--SPPN 264 (713)
Q Consensus 202 ~~-----------~~a~~~l~~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~i~~~~a~~---ll~~~~~-~--~~~~ 264 (713)
++ -.-+-.|+..|++.|.++.|...|.+++..-. ....+..|--.++.| .+....+ + ...+
T Consensus 235 iiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n 312 (835)
T KOG2047|consen 235 IIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGN 312 (835)
T ss_pred HHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccC
Confidence 22 23455678899999999999999999987521 222333332222221 0110010 0 0000
Q ss_pred ccccccccccCCchhHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHH
Q 035707 265 LRLQMELSFVPRNNIEEAVLLLLILLKKIVLGKIEWDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLAL 344 (713)
Q Consensus 265 ~~~~~~~~~~~~~~~eeA~~ll~~~~~~~~l~~~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~ 344 (713)
.. -....-.....++.-+....+++..+.+.+.|....-+..-.. ...|+..+-...|.+++....+....
T Consensus 313 ~e-d~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~------ 383 (835)
T KOG2047|consen 313 EE-DDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAV------ 383 (835)
T ss_pred hh-hhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCC------
Confidence 00 0000000000001111111122445666666665555443332 23455666666666655443222110
Q ss_pred HhhcccCCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHH
Q 035707 345 CYLGEENSDCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQ 424 (713)
Q Consensus 345 ~~~~~~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~ 424 (713)
..-...|...|+.|...|+.+ .|..+|+++.+ .+-.........|+..|..- .+..+++.
T Consensus 384 -------Gs~~~Lw~~faklYe~~~~l~-~aRvifeka~~-V~y~~v~dLa~vw~~waemE-----------lrh~~~~~ 443 (835)
T KOG2047|consen 384 -------GSPGTLWVEFAKLYENNGDLD-DARVIFEKATK-VPYKTVEDLAEVWCAWAEME-----------LRHENFEA 443 (835)
T ss_pred -------CChhhHHHHHHHHHHhcCcHH-HHHHHHHHhhc-CCccchHHHHHHHHHHHHHH-----------HhhhhHHH
Confidence 123467788899999999999 99999999998 43333334456777777766 78889999
Q ss_pred HHHHHHHHHHhhCCC------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHH
Q 035707 425 ALVALETAEKTMRER------------------DPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVL 486 (713)
Q Consensus 425 A~~~~~~al~~~~p~------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~ 486 (713)
|+.+.++|. ..... ...+|..++......|-++.....|++++++.--.| ....+.|..+
T Consensus 444 Al~lm~~A~-~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTP-qii~NyAmfL 521 (835)
T KOG2047|consen 444 ALKLMRRAT-HVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATP-QIIINYAMFL 521 (835)
T ss_pred HHHHHHhhh-cCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCH-HHHHHHHHHH
Confidence 999999987 54321 134677778888888999999999999999887777 8888999999
Q ss_pred HHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCC
Q 035707 487 SAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQI---AQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHD 563 (713)
Q Consensus 487 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 563 (713)
....-++++.+.|++.+.+.+-|...++|...-.-+. .--+++.|..+|+++++..|..
T Consensus 522 Eeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~------------------ 583 (835)
T KOG2047|consen 522 EEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPE------------------ 583 (835)
T ss_pred HhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH------------------
Confidence 9999999999999999999876667777765444333 3357899999999999987621
Q ss_pred CccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Ch-hHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HH
Q 035707 564 RSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPY-SA-SGWHS-TGLLYEAKGLQQEALVSFRKALDAEPNHV--PS 638 (713)
Q Consensus 564 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~-~~~~~-lg~~~~~~g~~~eA~~~~~~al~~~p~~~--~~ 638 (713)
..-.++...+.+-..-|--..|+..|+++-..-+. +- ..|+. +..+...-| ...-...|++|++.-|+.. ..
T Consensus 584 --~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yG-v~~TR~iYekaIe~Lp~~~~r~m 660 (835)
T KOG2047|consen 584 --HAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYG-VPRTREIYEKAIESLPDSKAREM 660 (835)
T ss_pred --HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhC-CcccHHHHHHHHHhCChHHHHHH
Confidence 11345556677777788889999999997654322 11 11111 111222223 2345678888888777653 34
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhC-CC-CHHHHHHHHHHHHHhCC
Q 035707 639 LVSIARVLRQIGGESMATIRCFLTDALRLD-RT-NTTAWYNLGLLYKTYAG 687 (713)
Q Consensus 639 ~~~la~~~~~~g~~~l~~A~~~~~~al~~~-p~-~~~~~~~lg~~~~~~g~ 687 (713)
....+.+-.+.|..+ .|+..|.-.-++. |. ++..|..--..-.+.|+
T Consensus 661 clrFAdlEtklGEid--RARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 661 CLRFADLETKLGEID--RARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHHHHhhhhhhHH--HHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 455688888889987 8988888777754 43 56677777666777777
No 104
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.42 E-value=2.9e-11 Score=133.91 Aligned_cols=208 Identities=14% Similarity=0.069 Sum_probs=160.1
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC-----
Q 035707 435 TMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKW----- 509 (713)
Q Consensus 435 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----- 509 (713)
..+|.+..+|..++..+...+++++|+...+..++..|+.. ..++.+|.++...++++++..+ .++...+..
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i-~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSI-SALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcce-ehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 45688999999999999999999999999999999999998 9999999999999998887666 555554311
Q ss_pred ------------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHH
Q 035707 510 ------------DQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANV 577 (713)
Q Consensus 510 ------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 577 (713)
.+..+++.+|.+|-..|++++|...|+++++.+|++ +.+.+++|..
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n----------------------~~aLNn~AY~ 159 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDN----------------------PEIVKKLATS 159 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc----------------------HHHHHHHHHH
Confidence 122567777777777777777777777777776544 7777777777
Q ss_pred HHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH--------HHH------
Q 035707 578 YTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLV--------SIA------ 643 (713)
Q Consensus 578 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~--------~la------ 643 (713)
|... +.++|+.++.+++.. +...+++.++..++.+.+..+|++.+.+. .++
T Consensus 160 ~ae~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~ 224 (906)
T PRK14720 160 YEEE-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVG 224 (906)
T ss_pred HHHh-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHH
Confidence 7777 777777777777654 44555667777777777777777655422 122
Q ss_pred ------HHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 035707 644 ------RVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKT 684 (713)
Q Consensus 644 ------~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 684 (713)
..|...++++ +++.+++.+++.+|+|..+...++.+|..
T Consensus 225 ~~~~l~~~y~~~~~~~--~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 225 LLEDLYEPYKALEDWD--EVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HHHHHHHHHhhhhhhh--HHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 5566777787 99999999999999999999999988874
No 105
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.41 E-value=2.1e-11 Score=112.94 Aligned_cols=175 Identities=16% Similarity=0.112 Sum_probs=135.2
Q ss_pred HHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 035707 460 ALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLL 539 (713)
Q Consensus 460 A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 539 (713)
+...+-+....+|++. .+ ..++..+...|+-+.+..+..++...+| .+..++..+|...+..|++.+|+..++++.
T Consensus 52 a~~al~~~~~~~p~d~-~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~--~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~ 127 (257)
T COG5010 52 AAAALGAAVLRNPEDL-SI-AKLATALYLRGDADSSLAVLQKSAIAYP--KDRELLAAQGKNQIRNGNFGEAVSVLRKAA 127 (257)
T ss_pred HHHHHHHHHhcCcchH-HH-HHHHHHHHhcccccchHHHHhhhhccCc--ccHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 4444555555677776 66 7777778888888888877777776666 566677677888888888888888888887
Q ss_pred HHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHH
Q 035707 540 AVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQ 619 (713)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 619 (713)
...|++ ..+|..+|.+|.+.|++++|...|.+++++.|.++.+..++|..+.-.|+++
T Consensus 128 ~l~p~d----------------------~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~ 185 (257)
T COG5010 128 RLAPTD----------------------WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLE 185 (257)
T ss_pred ccCCCC----------------------hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHH
Confidence 775544 7888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 035707 620 EALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLT 662 (713)
Q Consensus 620 eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~ 662 (713)
.|..++..+....+.+..+..+++.+...+|+++ +|.....
T Consensus 186 ~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~--~A~~i~~ 226 (257)
T COG5010 186 DAETLLLPAYLSPAADSRVRQNLALVVGLQGDFR--EAEDIAV 226 (257)
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChH--HHHhhcc
Confidence 8888888887777777888888888888888876 6766644
No 106
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.41 E-value=3.2e-12 Score=113.33 Aligned_cols=117 Identities=12% Similarity=0.079 Sum_probs=105.5
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhC
Q 035707 589 VCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLD 668 (713)
Q Consensus 589 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~ 668 (713)
..|++++..+|.+..+.+.+|..+...|++++|+..|++++..+|+++.++..+|.++...|+++ +|+.+++++++.+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~--~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYE--EAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcC
Confidence 46788888999888889999999999999999999999999999999999999999999999987 8999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCCCC
Q 035707 669 RTNTTAWYNLGLLYKTYAGASALEAVECFEAAALLEESAPV 709 (713)
Q Consensus 669 p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~~~ 709 (713)
|+++..++.+|.++...|+ +++|+..|++++++.|+++.
T Consensus 82 p~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGE--PESALKALDLAIEICGENPE 120 (135)
T ss_pred CCChHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhccccch
Confidence 9999999999999999999 99999999999999988765
No 107
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.41 E-value=2.5e-11 Score=112.54 Aligned_cols=178 Identities=15% Similarity=0.147 Sum_probs=159.6
Q ss_pred HHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHH
Q 035707 493 ADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWH 572 (713)
Q Consensus 493 ~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (713)
..+...+-.....+| .+..+ ..++..+...|+-+.+..+..++....| .+..+..
T Consensus 50 ~~a~~al~~~~~~~p--~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~----------------------~d~~ll~ 104 (257)
T COG5010 50 QGAAAALGAAVLRNP--EDLSI-AKLATALYLRGDADSSLAVLQKSAIAYP----------------------KDRELLA 104 (257)
T ss_pred hHHHHHHHHHHhcCc--chHHH-HHHHHHHHhcccccchHHHHhhhhccCc----------------------ccHHHHH
Confidence 335556666666777 67777 8999999999999999988888766644 3477777
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC
Q 035707 573 DLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGE 652 (713)
Q Consensus 573 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 652 (713)
.+|...+..|++..|+..++++..+.|++..+|+.+|.+|.+.|++++|...|.+++++.|+.+.+..++|..+.-.|++
T Consensus 105 ~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~ 184 (257)
T COG5010 105 AQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDL 184 (257)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 035707 653 SMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEA 699 (713)
Q Consensus 653 ~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~ 699 (713)
. .|..++..+....+.+..+..+|+.+....|+ +++|...-.+
T Consensus 185 ~--~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~--~~~A~~i~~~ 227 (257)
T COG5010 185 E--DAETLLLPAYLSPAADSRVRQNLALVVGLQGD--FREAEDIAVQ 227 (257)
T ss_pred H--HHHHHHHHHHhCCCCchHHHHHHHHHHhhcCC--hHHHHhhccc
Confidence 7 99999999998888899999999999999999 9999876544
No 108
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.40 E-value=2.6e-09 Score=126.65 Aligned_cols=329 Identities=15% Similarity=0.080 Sum_probs=231.5
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCC-ChHHHHHHHHHHHhcCCChHHHHHHH
Q 035707 301 DPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSD-CNLELLVASKICAENKVCIEEGITYA 379 (713)
Q Consensus 301 ~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~-~~~~~~~~a~~~~~~g~~~~~A~~~~ 379 (713)
++.+....+..+...|+++.+...++.+.......... .+|. ........+.++...|++. +|..++
T Consensus 408 ~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~-----------~~~~~~~~~~~~~a~~~~~~g~~~-~A~~~~ 475 (903)
T PRK04841 408 NPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIE-----------LDGTLQAEFNALRAQVAINDGDPE-EAERLA 475 (903)
T ss_pred CcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcc-----------cchhHHHHHHHHHHHHHHhCCCHH-HHHHHH
Confidence 44455666777888899999888887764321110000 0000 1233445677888999999 999999
Q ss_pred HHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHH
Q 035707 380 RKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERD------PYIIYHLCLENAE 453 (713)
Q Consensus 380 ~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~------~~~~~~la~~~~~ 453 (713)
++++......+......+...+|.++ ...|++++|...+++++ ...... ..++..+|.++..
T Consensus 476 ~~al~~~~~~~~~~~~~a~~~lg~~~-----------~~~G~~~~A~~~~~~al-~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 476 ELALAELPLTWYYSRIVATSVLGEVH-----------HCKGELARALAMMQQTE-QMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred HHHHhcCCCccHHHHHHHHHHHHHHH-----------HHcCCHHHHHHHHHHHH-HHHhhhcchHHHHHHHHHHHHHHHH
Confidence 99998322222222345677888888 78899999999999998 654321 2356778999999
Q ss_pred cCCHHHHHHHHHHHHhhhcCC-----c--hHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCC---CCcHHHHHHHHHHHH
Q 035707 454 QRKLDVALYYAKKLLNLEARS-----N--VKGYLLLARVLSAQKQFADAESVINDSLDQTGK---WDQGELLRTKAKLQI 523 (713)
Q Consensus 454 ~g~~~~A~~~~~~~l~~~p~~-----~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~la~~~~ 523 (713)
.|++++|...+++++...... . ...+..+|.++...|++++|...+.+++..... ......+..++.++.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 999999999999998763221 1 134557888999999999999999999876321 123456677899999
Q ss_pred HhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCcc-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh
Q 035707 524 AQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSL-EMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSA 602 (713)
Q Consensus 524 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 602 (713)
..|++++|...+.++....+.. ..... ...........+...|+.+.|...+.......+...
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~ 687 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNG----------------RYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANN 687 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcc----------------cccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccc
Confidence 9999999999999998864321 00000 011111123445568999999999877665332222
Q ss_pred h----HHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC
Q 035707 603 S----GWHSTGLLYEAKGLQQEALVSFRKALDAE------PNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTN 671 (713)
Q Consensus 603 ~----~~~~lg~~~~~~g~~~eA~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~ 671 (713)
. .+..++.++...|++++|...+++++... .....++..+|.++...|+.+ +|...+.+++++....
T Consensus 688 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~--~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 688 HFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKS--EAQRVLLEALKLANRT 764 (903)
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHhCcc
Confidence 1 24678999999999999999999998752 123457888999999999987 9999999999986544
No 109
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.40 E-value=4.6e-12 Score=123.00 Aligned_cols=272 Identities=15% Similarity=0.086 Sum_probs=202.6
Q ss_pred HHHhcHHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhh------cCCchHHHHHHHHHH
Q 035707 417 KRILKQSQALVALETAEKTMRERDPY----IIYHLCLENAEQRKLDVALYYAKKLLNLE------ARSNVKGYLLLARVL 486 (713)
Q Consensus 417 ~~~~~~~~A~~~~~~al~~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~~la~~~ 486 (713)
.+.|+....+..|+.|+ +...++.. ++..+|.+|+..++|++|+++...=+.+. -... .+--.||.++
T Consensus 28 ck~gdcraGv~ff~aA~-qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEA-KssgNLGNtl 105 (639)
T KOG1130|consen 28 CKMGDCRAGVDFFKAAL-QVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEA-KSSGNLGNTL 105 (639)
T ss_pred HhccchhhhHHHHHHHH-HhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccc-cccccccchh
Confidence 56788899999999999 88877743 56789999999999999999865543321 1122 4556789999
Q ss_pred HHcCCHHHHHHHHHHHhhcc----CCCCcHHHHHHHHHHHHHhCCH-------------HHHHHHHHHHHHHHhhhhhhh
Q 035707 487 SAQKQFADAESVINDSLDQT----GKWDQGELLRTKAKLQIAQGRL-------------KNAIETYVNLLAVLQFRKKSF 549 (713)
Q Consensus 487 ~~~g~~~~A~~~~~~al~~~----p~~~~~~~~~~la~~~~~~g~~-------------~~A~~~~~~~l~~~~~~~~~~ 549 (713)
...|.|++|+.+..+-+... .......+++++|.+|...|+. +++...++.+.+....+.+-.
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888877653 2223457899999999887752 344444444444433221110
Q ss_pred hhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHcCCHHHHHH
Q 035707 550 SAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYS------ASGWHSTGLLYEAKGLQQEALV 623 (713)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~eA~~ 623 (713)
. ...+......++-+||..|+-+|+|++|+..-+.-+.+.... -.++.++|.++.-.|+++.|++
T Consensus 186 ~---------~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~e 256 (639)
T KOG1130|consen 186 E---------KLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIE 256 (639)
T ss_pred H---------HhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHH
Confidence 0 122223336678889999999999999999887766654322 3578899999999999999999
Q ss_pred HHHHHHhc----CCC--CHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHhCCCCHH
Q 035707 624 SFRKALDA----EPN--HVPSLVSIARVLRQIGGESMATIRCFLTDALRLDR------TNTTAWYNLGLLYKTYAGASAL 691 (713)
Q Consensus 624 ~~~~al~~----~p~--~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~~ 691 (713)
+|++.+.+ ... .+...+.+|..|.-..+++ +|+.++.+-+.+.. ....+++.||..+-..|. .+
T Consensus 257 hYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~--kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~--h~ 332 (639)
T KOG1130|consen 257 HYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQ--KAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGE--HR 332 (639)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh--HH
Confidence 99997754 222 3456788999999999987 99999988776532 345688999999999999 99
Q ss_pred HHHHHHHHHHcc
Q 035707 692 EAVECFEAAALL 703 (713)
Q Consensus 692 ~A~~~~~~a~~l 703 (713)
+|+.+.++.+++
T Consensus 333 kAl~fae~hl~~ 344 (639)
T KOG1130|consen 333 KALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHHH
Confidence 999999888764
No 110
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=9.5e-12 Score=117.38 Aligned_cols=118 Identities=16% Similarity=0.172 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 035707 568 METWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLR 647 (713)
Q Consensus 568 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~ 647 (713)
++-+-.-|.-..+.++|++|+..|.++|+++|.++..|.+.+.+|.++|.++.|++.++.++.++|.+..+|..||.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 44455556666677777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q 035707 648 QIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAG 687 (713)
Q Consensus 648 ~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 687 (713)
.+|++. +|+..|+++++++|++...+.+|..+-...++
T Consensus 161 ~~gk~~--~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 161 ALGKYE--EAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred ccCcHH--HHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 777775 77777777777777777777777666666555
No 111
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.38 E-value=6.2e-11 Score=130.74 Aligned_cols=138 Identities=12% Similarity=0.030 Sum_probs=89.0
Q ss_pred CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHH
Q 035707 510 DQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEV 589 (713)
Q Consensus 510 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 589 (713)
.+..+++.+|.+....|++++|...++.+++..|++ ..++..++.++.+.+++++|+.
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~----------------------~~a~~~~a~~L~~~~~~eeA~~ 141 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS----------------------SEAFILMLRGVKRQQGIEAGRA 141 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc----------------------HHHHHHHHHHHHHhccHHHHHH
Confidence 446666666666666666666666666666665544 6666666666666666666666
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCC
Q 035707 590 CLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDR 669 (713)
Q Consensus 590 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p 669 (713)
.+++++..+|+++..++.+|.++...|++++|+..|++++..+|+++.++.++|.++...|+.+ +|...|++++....
T Consensus 142 ~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~--~A~~~~~~a~~~~~ 219 (694)
T PRK15179 142 EIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALW--RARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhhC
Confidence 6666666666666666666666666666666666666666666666666666666666666665 66666666666544
Q ss_pred CC
Q 035707 670 TN 671 (713)
Q Consensus 670 ~~ 671 (713)
+-
T Consensus 220 ~~ 221 (694)
T PRK15179 220 DG 221 (694)
T ss_pred cc
Confidence 43
No 112
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.37 E-value=1.9e-09 Score=105.57 Aligned_cols=263 Identities=16% Similarity=0.059 Sum_probs=199.9
Q ss_pred HHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHH
Q 035707 417 KRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAE 496 (713)
Q Consensus 417 ~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~ 496 (713)
...|+|.+|.....++- +..+.....+..-+.+-.+.|+++.|-.+..++-+..+++...+....+.++...|+++.|.
T Consensus 95 l~eG~~~qAEkl~~rna-e~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 95 LFEGDFQQAEKLLRRNA-EHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred HhcCcHHHHHHHHHHhh-hcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence 45789999999999987 66666666666677788899999999999999999866665468888999999999999999
Q ss_pred HHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccH-----HHHH
Q 035707 497 SVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLE-----METW 571 (713)
Q Consensus 497 ~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 571 (713)
.-+.++++..| .++.++....++|...|++.+....+.++-+..-- .+.+ -.+|
T Consensus 174 ~~v~~ll~~~p--r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l-------------------~~~e~~~le~~a~ 232 (400)
T COG3071 174 ENVDQLLEMTP--RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLL-------------------SDEEAARLEQQAW 232 (400)
T ss_pred HHHHHHHHhCc--CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCC-------------------ChHHHHHHHHHHH
Confidence 99999999999 78999999999999999999999888877654211 1111 2222
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 035707 572 HDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGG 651 (713)
Q Consensus 572 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 651 (713)
..+-.-....+..+.=..+++..-..-..++.....++.-+...|++++|.+..+++++..-+.. +..+.. ...-++
T Consensus 233 ~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~-~l~~~d 309 (400)
T COG3071 233 EGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIP-RLRPGD 309 (400)
T ss_pred HHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHh-hcCCCC
Confidence 22221111222222222344444333345678888888999999999999999999998754432 222211 123355
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCCC
Q 035707 652 ESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALLEESAP 708 (713)
Q Consensus 652 ~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~~ 708 (713)
.. .=++..++.++..|++|..+..||..+.+.+. |.+|..+|+.|+...|+..
T Consensus 310 ~~--~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~--w~kA~~~leaAl~~~~s~~ 362 (400)
T COG3071 310 PE--PLIKAAEKWLKQHPEDPLLLSTLGRLALKNKL--WGKASEALEAALKLRPSAS 362 (400)
T ss_pred ch--HHHHHHHHHHHhCCCChhHHHHHHHHHHHhhH--HHHHHHHHHHHHhcCCChh
Confidence 54 77888899999999999999999999999999 9999999999999988753
No 113
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=9.5e-10 Score=102.84 Aligned_cols=368 Identities=14% Similarity=0.085 Sum_probs=178.2
Q ss_pred CCchhHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCC
Q 035707 275 PRNNIEEAVLLLLILLKKIVLGKIEWDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDC 354 (713)
Q Consensus 275 ~~~~~eeA~~ll~~~~~~~~l~~~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~ 354 (713)
...++++||.++ .....+.|.....+..|+.+|....++..|+.+++++-... |..
T Consensus 22 ~d~ry~DaI~~l-----~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~-------------------P~~ 77 (459)
T KOG4340|consen 22 RDARYADAIQLL-----GSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH-------------------PEL 77 (459)
T ss_pred HHhhHHHHHHHH-----HHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-------------------hHH
Confidence 345677787765 45567788888999999999999999999999999875533 444
Q ss_pred hHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccH-------------------
Q 035707 355 NLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSD------------------- 415 (713)
Q Consensus 355 ~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~------------------- 415 (713)
....+..+...++.+.+. +|+.......+ ++.+......+-+.+....++...+.
T Consensus 78 ~qYrlY~AQSLY~A~i~A-DALrV~~~~~D-----~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~g 151 (459)
T KOG4340|consen 78 EQYRLYQAQSLYKACIYA-DALRVAFLLLD-----NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLG 151 (459)
T ss_pred HHHHHHHHHHHHHhcccH-HHHHHHHHhcC-----CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccch
Confidence 444444455555555555 55544433322 11122233322222221000000000
Q ss_pred --HHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh----cCC---------------
Q 035707 416 --SKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLE----ARS--------------- 474 (713)
Q Consensus 416 --~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----p~~--------------- 474 (713)
..+.|+++.|++-|+.++ +...-++-.-|+++.++++.|+++.|+++..++++.. |..
T Consensus 152 CllykegqyEaAvqkFqaAl-qvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvg 230 (459)
T KOG4340|consen 152 CLLYKEGQYEAAVQKFQAAL-QVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVG 230 (459)
T ss_pred heeeccccHHHHHHHHHHHH-hhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhccc
Confidence 034455555555555555 5554455555555555555555555555544444321 110
Q ss_pred -c--------hHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 035707 475 -N--------VKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFR 545 (713)
Q Consensus 475 -~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 545 (713)
+ ..++...+.++++.|+++.|.+.+..+--.....-++..+.+++..- ..+++.+..+-+.-++.++|
T Consensus 231 Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-- 307 (459)
T KOG4340|consen 231 NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-- 307 (459)
T ss_pred chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC--
Confidence 0 01233344444444444444443332211111111223333333222 12334444444444444332
Q ss_pred hhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHcCCHH
Q 035707 546 KKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYS------ASGWHSTGLLYEAKGLQQ 619 (713)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~ 619 (713)
--.+.+.++-.+|++..-|+-|...+-+ +|+. +..+..+-.+-...-..+
T Consensus 308 --------------------fP~ETFANlLllyCKNeyf~lAADvLAE----n~~lTyk~L~~Yly~LLdaLIt~qT~pE 363 (459)
T KOG4340|consen 308 --------------------FPPETFANLLLLYCKNEYFDLAADVLAE----NAHLTYKFLTPYLYDLLDALITCQTAPE 363 (459)
T ss_pred --------------------CChHHHHHHHHHHhhhHHHhHHHHHHhh----CcchhHHHhhHHHHHHHHHHHhCCCCHH
Confidence 2245555666666666666666554432 2221 111111211112233455
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHH-HHHHHhcCCC---hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 035707 620 EALVSFRKALDAEPNHVPSLVSIA-RVLRQIGGES---MATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVE 695 (713)
Q Consensus 620 eA~~~~~~al~~~p~~~~~~~~la-~~~~~~g~~~---l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~ 695 (713)
+|.+-+...-.. ...-+..++ .+.......+ +..|++.|+++++.. -.+....+++|+...+ +..+.+
T Consensus 364 ea~KKL~~La~~---l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~D--y~~vEk 435 (459)
T KOG4340|consen 364 EAFKKLDGLAGM---LTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLED--YPMVEK 435 (459)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccc--cHHHHH
Confidence 555444332211 011111111 1111111111 234556666666643 3467788999999999 999999
Q ss_pred HHHHHHccccCCC
Q 035707 696 CFEAAALLEESAP 708 (713)
Q Consensus 696 ~~~~a~~l~p~~~ 708 (713)
.|++..+...++.
T Consensus 436 ~Fr~SvefC~ehd 448 (459)
T KOG4340|consen 436 IFRKSVEFCNDHD 448 (459)
T ss_pred HHHHHHhhhcccc
Confidence 9999988765554
No 114
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.34 E-value=9e-12 Score=123.63 Aligned_cols=255 Identities=15% Similarity=0.056 Sum_probs=187.0
Q ss_pred HHHhcHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHH
Q 035707 417 KRILKQSQALVALETAEKTMRE-RDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADA 495 (713)
Q Consensus 417 ~~~~~~~~A~~~~~~al~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A 495 (713)
+-.|+|..++...+ .. ..++ ......+.+.+++..+|+++..+.-... ..+... .+...++..+...++-+.+
T Consensus 12 fy~G~Y~~~i~e~~-~~-~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l-~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LK-SFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPEL-QAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HCTT-HHHHCHHHH-CH-TSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCC-HHHHHHHHHHCTSTTHHCH
T ss_pred HHhhhHHHHHHHhh-cc-CCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhH-HHHHHHHHHHhCccchHHH
Confidence 34788899987766 22 3333 2355678889999999998876654433 122223 6777777777665677777
Q ss_pred HHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHH
Q 035707 496 ESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLA 575 (713)
Q Consensus 496 ~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 575 (713)
+..++..+.......+..+....|.++...|++++|++.+.+. ...+......
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~---------------------------~~lE~~al~V 138 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG---------------------------GSLELLALAV 138 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT---------------------------TCHHHHHHHH
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc---------------------------CcccHHHHHH
Confidence 7777766655432235566677788888889999998877653 1256666788
Q ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCC
Q 035707 576 NVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKG--LQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGES 653 (713)
Q Consensus 576 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 653 (713)
.+|..+++++.|.+.++.+.+.+.++..+....+++....| .+.+|...|++..+..+.++..++.++.++..+|+++
T Consensus 139 qi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~ 218 (290)
T PF04733_consen 139 QILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYE 218 (290)
T ss_dssp HHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHH
Confidence 89999999999999999999888877666666666666666 5899999999988887888999999999999999997
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHccccCCC
Q 035707 654 MATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASA-LEAVECFEAAALLEESAP 708 (713)
Q Consensus 654 l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~-~~A~~~~~~a~~l~p~~~ 708 (713)
+|...+.+++..+|++++++.+++.+....|+ . +.+.+++.+....+|++|
T Consensus 219 --eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk--~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 219 --EAEELLEEALEKDPNDPDTLANLIVCSLHLGK--PTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp --HHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT---TCHHHHHHHHHCHHHTTTSH
T ss_pred --HHHHHHHHHHHhccCCHHHHHHHHHHHHHhCC--ChhHHHHHHHHHHHhCCCCh
Confidence 99999999999999999999999999999998 7 567778888777888766
No 115
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.34 E-value=2.3e-10 Score=126.90 Aligned_cols=236 Identities=13% Similarity=0.040 Sum_probs=187.3
Q ss_pred cCCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHH-------hcH
Q 035707 350 ENSDCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRI-------LKQ 422 (713)
Q Consensus 350 ~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~-------~~~ 422 (713)
-+|.+..++..+...+...++++ +|+..++..++ ..|+.. ..++.+|.++...++...+..... .++
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~d-eai~i~~~~l~-~~P~~i----~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~ 99 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTD-EAKDICEEHLK-EHKKSI----SALYISGILSLSRRPLNDSNLLNLIDSFSQNLKW 99 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHH-HHHHHHHHHHH-hCCcce----ehHHHHHHHHHhhcchhhhhhhhhhhhcccccch
Confidence 36899999999999999999999 99999999999 889988 999999999866665443321111 222
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 035707 423 SQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDS 502 (713)
Q Consensus 423 ~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 502 (713)
.+++.+...+ ...+.+..+++.+|.+|-++|++++|...++++++.+|+++ .+...+|..+... ++++|+.++.++
T Consensus 100 -~~ve~~~~~i-~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~-~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 100 -AIVEHICDKI-LLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNP-EIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred -hHHHHHHHHH-HhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccH-HHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 4555555555 55666668999999999999999999999999999999999 9999999999999 999999999998
Q ss_pred hhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCC
Q 035707 503 LDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLS 582 (713)
Q Consensus 503 l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 582 (713)
+.. +...+++.++.++..+.+..+|.+.+.+......... ..........+.-+-..|...+
T Consensus 176 V~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~--~~~~~~~~~~~~~l~~~y~~~~ 237 (906)
T PRK14720 176 IYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLG--HREFTRLVGLLEDLYEPYKALE 237 (906)
T ss_pred HHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHh--hhccchhHHHHHHHHHHHhhhh
Confidence 765 4556678888888888888887765554321111110 0112334677778888999999
Q ss_pred CHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 035707 583 QWRDAEVCLSKSKAINPYSASGWHSTGLLYE 613 (713)
Q Consensus 583 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 613 (713)
+|++++.+++.+++.+|.+..+...++.+|.
T Consensus 238 ~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 238 DWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 9999999999999999999999999999886
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.33 E-value=3.6e-11 Score=125.59 Aligned_cols=218 Identities=19% Similarity=0.170 Sum_probs=184.1
Q ss_pred HHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCc
Q 035707 396 IANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSN 475 (713)
Q Consensus 396 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 475 (713)
.....++..+ ...|-...|+..|++.- .|-....+|...|+..+|.....+-++ .|.++
T Consensus 399 q~q~~laell-----------~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~ 457 (777)
T KOG1128|consen 399 QLQRLLAELL-----------LSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE-KDPDP 457 (777)
T ss_pred hHHHHHHHHH-----------HHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcc
Confidence 3445566666 67788899999998665 677888999999999999999999888 45555
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 035707 476 VKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNL 555 (713)
Q Consensus 476 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 555 (713)
..|..+|.+.....-|++|.++.+. .+..+...+|......+++.++...++..++++|-.
T Consensus 458 -~lyc~LGDv~~d~s~yEkawElsn~--------~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq---------- 518 (777)
T KOG1128|consen 458 -RLYCLLGDVLHDPSLYEKAWELSNY--------ISARAQRSLALLILSNKDFSEADKHLERSLEINPLQ---------- 518 (777)
T ss_pred -hhHHHhhhhccChHHHHHHHHHhhh--------hhHHHHHhhccccccchhHHHHHHHHHHHhhcCccc----------
Confidence 7777787777666656666555544 345567777888888999999999999999997644
Q ss_pred hhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 035707 556 VKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNH 635 (713)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 635 (713)
...|+.+|.+..+.++++.|..+|...+..+|++..+|++++..|...++..+|...++++++.+-++
T Consensus 519 ------------~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~ 586 (777)
T KOG1128|consen 519 ------------LGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH 586 (777)
T ss_pred ------------hhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 035707 636 VPSLVSIARVLRQIGGESMATIRCFLTDALRL 667 (713)
Q Consensus 636 ~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~ 667 (713)
...|-|.-.+..+.|.++ +|++.+.+.+.+
T Consensus 587 w~iWENymlvsvdvge~e--da~~A~~rll~~ 616 (777)
T KOG1128|consen 587 WQIWENYMLVSVDVGEFE--DAIKAYHRLLDL 616 (777)
T ss_pred CeeeechhhhhhhcccHH--HHHHHHHHHHHh
Confidence 899999999999999997 999999888764
No 117
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.30 E-value=4.2e-11 Score=106.10 Aligned_cols=108 Identities=17% Similarity=0.159 Sum_probs=102.7
Q ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 035707 566 LEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARV 645 (713)
Q Consensus 566 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~ 645 (713)
.+......+|..+...|++++|...+++++..+|.++.++..+|.++...|++++|+..|++++..+|+++..++.+|.+
T Consensus 15 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 94 (135)
T TIGR02552 15 EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAEC 94 (135)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 34788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCChHHHHHHHHHHHhhCCCCHHHH
Q 035707 646 LRQIGGESMATIRCFLTDALRLDRTNTTAW 675 (713)
Q Consensus 646 ~~~~g~~~l~~A~~~~~~al~~~p~~~~~~ 675 (713)
+...|+++ +|+..++++++.+|++...+
T Consensus 95 ~~~~g~~~--~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 95 LLALGEPE--SALKALDLAIEICGENPEYS 122 (135)
T ss_pred HHHcCCHH--HHHHHHHHHHHhccccchHH
Confidence 99999997 99999999999999987644
No 118
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.27 E-value=6.6e-11 Score=117.50 Aligned_cols=260 Identities=14% Similarity=0.063 Sum_probs=185.4
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHH
Q 035707 363 KICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPY 442 (713)
Q Consensus 363 ~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~ 442 (713)
+-++-.|+|. .++.-++ +. +.++.........+..++ ...|+++..+.... ...+....
T Consensus 9 rn~fy~G~Y~-~~i~e~~--~~---~~~~~~~~e~~~~~~Rs~-----------iAlg~~~~vl~ei~----~~~~~~l~ 67 (290)
T PF04733_consen 9 RNQFYLGNYQ-QCINEAS--LK---SFSPENKLERDFYQYRSY-----------IALGQYDSVLSEIK----KSSSPELQ 67 (290)
T ss_dssp HHHHCTT-HH-HHCHHHH--CH---TSTCHHHHHHHHHHHHHH-----------HHTT-HHHHHHHS-----TTSSCCCH
T ss_pred HHHHHhhhHH-HHHHHhh--cc---CCCchhHHHHHHHHHHHH-----------HHcCChhHHHHHhc----cCCChhHH
Confidence 4566788888 8886665 22 222223346677777888 66677676555443 33344455
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHH
Q 035707 443 IIYHLCLENAEQRKLDVALYYAKKLLNLEA--RSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAK 520 (713)
Q Consensus 443 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~ 520 (713)
+...++..+...++-+.++..++..+.... .++ ......|.++...|++++|+..+.+. .+.+.......
T Consensus 68 av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~-~~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE~~al~Vq 139 (290)
T PF04733_consen 68 AVRLLAEYLSSPSDKESALEELKELLADQAGESNE-IVQLLAATILFHEGDYEEALKLLHKG-------GSLELLALAVQ 139 (290)
T ss_dssp HHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHH-HHHHHHHHHHCCCCHHHHHHCCCTTT-------TCHHHHHHHHH
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHhccccccH-HHHHHHHHHHHHcCCHHHHHHHHHcc-------CcccHHHHHHH
Confidence 666676666555566777777666553322 233 45566678888889999998888653 46778888899
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcC
Q 035707 521 LQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLS--QWRDAEVCLSKSKAIN 598 (713)
Q Consensus 521 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~ 598 (713)
++...++++.|.+.++.+.+.+++ ..-+....+++.+..| ++.+|.-.|++.....
T Consensus 140 i~L~~~R~dlA~k~l~~~~~~~eD----------------------~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~ 197 (290)
T PF04733_consen 140 ILLKMNRPDLAEKELKNMQQIDED----------------------SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKF 197 (290)
T ss_dssp HHHHTT-HHHHHHHHHHHHCCSCC----------------------HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCc----------------------HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc
Confidence 999999999999999887665432 2334444444555544 6999999999999888
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHH
Q 035707 599 PYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTA 674 (713)
Q Consensus 599 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~ 674 (713)
+.++..++.++.++..+|++++|...+++++..+|++++++.+++.+....|+.. +.+.+++.+....+|+++..
T Consensus 198 ~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~-~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 198 GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPT-EAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp --SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TC-HHHHHHHHHCHHHTTTSHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCCh-hHHHHHHHHHHHhCCCChHH
Confidence 8899999999999999999999999999999999999999999999999999985 36778888888899998754
No 119
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.27 E-value=6.2e-11 Score=102.80 Aligned_cols=102 Identities=13% Similarity=0.095 Sum_probs=69.9
Q ss_pred ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 035707 565 SLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIAR 644 (713)
Q Consensus 565 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~ 644 (713)
+...+..+.+|..+...|++++|...|+-+..++|.++..|++||.++..+|++.+|+..|.+++.++|+++.++.++|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 44566666666666677777777777777666777667777777777777777777777777777777777777777777
Q ss_pred HHHHhcCCChHHHHHHHHHHHhhC
Q 035707 645 VLRQIGGESMATIRCFLTDALRLD 668 (713)
Q Consensus 645 ~~~~~g~~~l~~A~~~~~~al~~~ 668 (713)
++...|+.+ .|++.|+.++...
T Consensus 112 c~L~lG~~~--~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACDNVC--YAIKALKAVVRIC 133 (157)
T ss_pred HHHHcCCHH--HHHHHHHHHHHHh
Confidence 777777665 6777776666654
No 120
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=9.5e-10 Score=102.84 Aligned_cols=186 Identities=16% Similarity=0.063 Sum_probs=123.6
Q ss_pred HhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHH
Q 035707 366 AENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIY 445 (713)
Q Consensus 366 ~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~ 445 (713)
....++. +|++++..-.+ ..|.+. .++..||.|| .+..++..|..+|++.- .+.|......+
T Consensus 21 I~d~ry~-DaI~~l~s~~E-r~p~~r----AgLSlLgyCY-----------Y~~Q~f~~AA~CYeQL~-ql~P~~~qYrl 82 (459)
T KOG4340|consen 21 IRDARYA-DAIQLLGSELE-RSPRSR----AGLSLLGYCY-----------YRLQEFALAAECYEQLG-QLHPELEQYRL 82 (459)
T ss_pred HHHhhHH-HHHHHHHHHHh-cCccch----HHHHHHHHHH-----------HHHHHHHHHHHHHHHHH-hhChHHHHHHH
Confidence 5667788 89988888777 677777 8889999999 88889999999999998 99998888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHh
Q 035707 446 HLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQ 525 (713)
Q Consensus 446 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~ 525 (713)
..+..+++.+.+..|+.....+.....-.. .....-+.+.+..+++..+...+++.- .........+.|.+..+.
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D~~~L~~-~~lqLqaAIkYse~Dl~g~rsLveQlp----~en~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLDNPALHS-RVLQLQAAIKYSEGDLPGSRSLVEQLP----SENEADGQINLGCLLYKE 157 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCCHHHHH-HHHHHHHHHhcccccCcchHHHHHhcc----CCCccchhccchheeecc
Confidence 889999999999999888776654211111 344444555555555555555544432 113344455556666666
Q ss_pred CCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 035707 526 GRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKA 596 (713)
Q Consensus 526 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 596 (713)
|+++.|++-|+.+++... ..+-+-++++.++++.++++.|+++..+.++
T Consensus 158 gqyEaAvqkFqaAlqvsG----------------------yqpllAYniALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSG----------------------YQPLLAYNLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred ccHHHHHHHHHHHHhhcC----------------------CCchhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 666666666666655522 1144445556666666666666655555443
No 121
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.22 E-value=1.5e-10 Score=109.46 Aligned_cols=118 Identities=12% Similarity=0.143 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 035707 478 GYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVK 557 (713)
Q Consensus 478 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 557 (713)
.+..-|.-+.+.++|.+|+..|.+||+++| .++..|.+.|.+|.++|.++.|++-++.++.++|..
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P--~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y------------ 148 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDP--TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY------------ 148 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH------------
Confidence 444556666677777777777777777777 677777777777777777777777777777776554
Q ss_pred hcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHH
Q 035707 558 NRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQ 619 (713)
Q Consensus 558 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 619 (713)
..+|..||.+|..+|++.+|++.|+++++++|++...+.+|..+-...++.+
T Consensus 149 ----------skay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 149 ----------SKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ----------HHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 7777777777777777777777777777777777777766666666655554
No 122
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.19 E-value=2.7e-10 Score=98.80 Aligned_cols=112 Identities=6% Similarity=-0.099 Sum_probs=104.0
Q ss_pred HHHhcC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC
Q 035707 593 KSKAIN-PYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTN 671 (713)
Q Consensus 593 ~al~~~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~ 671 (713)
-+..+. ++.-+..+.+|..+...|++++|...|+-+..++|.+...|++||.++..+|++. +|+..|.+++.++|++
T Consensus 25 ~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~--~AI~aY~~A~~L~~dd 102 (157)
T PRK15363 25 MLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWG--EAIYAYGRAAQIKIDA 102 (157)
T ss_pred HHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHH--HHHHHHHHHHhcCCCC
Confidence 344566 7778889999999999999999999999999999999999999999999999997 9999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCCC
Q 035707 672 TTAWYNLGLLYKTYAGASALEAVECFEAAALLEESAP 708 (713)
Q Consensus 672 ~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~~ 708 (713)
|.+++++|.++...|+ .+.|..+|+.++....++|
T Consensus 103 p~~~~~ag~c~L~lG~--~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 103 PQAPWAAAECYLACDN--VCYAIKALKAVVRICGEVS 137 (157)
T ss_pred chHHHHHHHHHHHcCC--HHHHHHHHHHHHHHhccCh
Confidence 9999999999999999 9999999999998764443
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.17 E-value=3.1e-08 Score=99.90 Aligned_cols=153 Identities=18% Similarity=0.117 Sum_probs=125.4
Q ss_pred cCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhh
Q 035707 472 ARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSA 551 (713)
Q Consensus 472 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 551 (713)
|... .+++..+..++..|++++|+..++..+...| +++..+...+.++...++.++|.+.+++++..+|..
T Consensus 303 ~~~~-aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P--~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~------ 373 (484)
T COG4783 303 RGGL-AAQYGRALQTYLAGQYDEALKLLQPLIAAQP--DNPYYLELAGDILLEANKAKEAIERLKKALALDPNS------ 373 (484)
T ss_pred ccch-HHHHHHHHHHHHhcccchHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc------
Confidence 5555 7888888888888888888888888888888 788888888888888888888888888888887654
Q ss_pred hhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 035707 552 GKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDA 631 (713)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 631 (713)
...+.++|..|.+.|++++|+..++..+..+|+++..|..++..|..+|+..+|...+
T Consensus 374 ----------------~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~------ 431 (484)
T COG4783 374 ----------------PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR------ 431 (484)
T ss_pred ----------------cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH------
Confidence 7788888888888888888888888888888888888888888888888877766544
Q ss_pred CCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhC
Q 035707 632 EPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLD 668 (713)
Q Consensus 632 ~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~ 668 (713)
+..|...|+++ +|+..+..+.+..
T Consensus 432 -----------AE~~~~~G~~~--~A~~~l~~A~~~~ 455 (484)
T COG4783 432 -----------AEGYALAGRLE--QAIIFLMRASQQV 455 (484)
T ss_pred -----------HHHHHhCCCHH--HHHHHHHHHHHhc
Confidence 44556667776 7888887777665
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.12 E-value=9.3e-09 Score=103.62 Aligned_cols=152 Identities=14% Similarity=0.056 Sum_probs=131.1
Q ss_pred CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHH
Q 035707 510 DQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEV 589 (713)
Q Consensus 510 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 589 (713)
....+++..+..+...|++++|...++.++...|++ +..+...+.++...++..+|.+
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N----------------------~~~~~~~~~i~~~~nk~~~A~e 361 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDN----------------------PYYLELAGDILLEANKAKEAIE 361 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHcCChHHHHH
Confidence 567788889999999999999999999988886654 8888899999999999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCC
Q 035707 590 CLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDR 669 (713)
Q Consensus 590 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p 669 (713)
.+++++..+|+.+..+.++|..+.+.|++.+|+..++..+..+|+++..|..|+..|..+|+.. +|.
T Consensus 362 ~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~--~a~----------- 428 (484)
T COG4783 362 RLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRA--EAL----------- 428 (484)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchH--HHH-----------
Confidence 9999999999999999999999999999999999999999999999999999999999999875 443
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccc
Q 035707 670 TNTTAWYNLGLLYKTYAGASALEAVECFEAAALLE 704 (713)
Q Consensus 670 ~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~ 704 (713)
...+..|...|+ +++|+..+.++.+..
T Consensus 429 ------~A~AE~~~~~G~--~~~A~~~l~~A~~~~ 455 (484)
T COG4783 429 ------LARAEGYALAGR--LEQAIIFLMRASQQV 455 (484)
T ss_pred ------HHHHHHHHhCCC--HHHHHHHHHHHHHhc
Confidence 345666777788 888888888777643
No 125
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.11 E-value=1.4e-09 Score=112.26 Aligned_cols=114 Identities=13% Similarity=0.059 Sum_probs=107.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 035707 571 WHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIG 650 (713)
Q Consensus 571 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g 650 (713)
+...|..++..|++++|+.+|+++++.+|.++.+++.+|.++...|++++|+..+++++.++|+++.+++.+|.++...|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 45678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q 035707 651 GESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYA 686 (713)
Q Consensus 651 ~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 686 (713)
+++ +|+..|+++++++|+++.+...++.+.....
T Consensus 85 ~~~--eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 85 EYQ--TAKAALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred CHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 997 9999999999999999999999888866653
No 126
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=5.8e-09 Score=99.68 Aligned_cols=123 Identities=26% Similarity=0.295 Sum_probs=110.6
Q ss_pred CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-CChHHHHHHH
Q 035707 583 QWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGG-ESMATIRCFL 661 (713)
Q Consensus 583 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~l~~A~~~~ 661 (713)
..++-+.-++.-+..+|+++.-|..||.+|..+|+++.|...|.+++++.|++++.+..+|.++..+.+ ..-.++...|
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 355666777888899999999999999999999999999999999999999999999999998776543 3336899999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCC
Q 035707 662 TDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALLEESA 707 (713)
Q Consensus 662 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~ 707 (713)
++++..+|++..+.+.||..++..|+ +.+|...++..+...|.+
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~--~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGD--YAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHccc--HHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999 999999999999977654
No 127
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.03 E-value=4.7e-09 Score=108.38 Aligned_cols=113 Identities=19% Similarity=0.184 Sum_probs=105.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 035707 515 LRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKS 594 (713)
Q Consensus 515 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 594 (713)
+...|......|++++|+..|++++..+|.+ ..+|..+|.+|...|++++|+..++++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~----------------------~~a~~~~a~~~~~~g~~~eAl~~~~~A 62 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN----------------------AELYADRAQANIKLGNFTEAVADANKA 62 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566888899999999999999999997755 889999999999999999999999999
Q ss_pred HhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 035707 595 KAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQI 649 (713)
Q Consensus 595 l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 649 (713)
+.++|.++.+++.+|.++...|++++|+..|++++.++|++..+...++.+....
T Consensus 63 l~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 63 IELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998888886655
No 128
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.03 E-value=1.1e-08 Score=94.39 Aligned_cols=142 Identities=17% Similarity=0.166 Sum_probs=98.9
Q ss_pred HHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHH
Q 035707 501 DSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTS 580 (713)
Q Consensus 501 ~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 580 (713)
..+..++.......++.+|..+...|++++|+..|++++...|+. +....++..+|.++..
T Consensus 24 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-------------------~~~~~~~~~la~~~~~ 84 (172)
T PRK02603 24 KILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP-------------------NDRSYILYNMGIIYAS 84 (172)
T ss_pred HHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc-------------------chHHHHHHHHHHHHHH
Confidence 333444433556677888888888888888888888888775532 2235678888888888
Q ss_pred CCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHH
Q 035707 581 LSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCF 660 (713)
Q Consensus 581 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~ 660 (713)
.|++++|+.++++++...|.+...+..+|.++...|+...+...+++++.. ++ +|+.+
T Consensus 85 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~--------------------~~--~A~~~ 142 (172)
T PRK02603 85 NGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEAL--------------------FD--KAAEY 142 (172)
T ss_pred cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHH--------------------HH--HHHHH
Confidence 888888888888888888888888888888888888776666655554321 23 77778
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhC
Q 035707 661 LTDALRLDRTNTTAWYNLGLLYKTYA 686 (713)
Q Consensus 661 ~~~al~~~p~~~~~~~~lg~~~~~~g 686 (713)
+++++..+|++ +...+..+...|
T Consensus 143 ~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 143 WKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHhhCchh---HHHHHHHHHhcC
Confidence 88888877765 333444444443
No 129
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.02 E-value=2.5e-08 Score=94.50 Aligned_cols=171 Identities=14% Similarity=0.029 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 035707 477 KGYLLLARVLSAQKQFADAESVINDSLDQTGKW-DQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNL 555 (713)
Q Consensus 477 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 555 (713)
..++..|..+...|++.+|+..|++++...|.. ....+.+.+|.++...|++++|+..+++.+...|++
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~---------- 75 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS---------- 75 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-----------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC----------
Confidence 445555555555555555555555555554421 123345555555555555555555555555555443
Q ss_pred hhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 035707 556 VKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNH 635 (713)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 635 (713)
+....+++.+|.++....+-. + ......+...+|+..|+..+...|++
T Consensus 76 ---------~~~~~A~Y~~g~~~~~~~~~~---------~--------------~~~~D~~~~~~A~~~~~~li~~yP~S 123 (203)
T PF13525_consen 76 ---------PKADYALYMLGLSYYKQIPGI---------L--------------RSDRDQTSTRKAIEEFEELIKRYPNS 123 (203)
T ss_dssp ---------TTHHHHHHHHHHHHHHHHHHH---------H---------------TT---HHHHHHHHHHHHHHHH-TTS
T ss_pred ---------cchhhHHHHHHHHHHHhCccc---------h--------------hcccChHHHHHHHHHHHHHHHHCcCc
Confidence 333455555555444321110 0 00001112234555555555555544
Q ss_pred HH-----------------HHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhCCCCHHHH
Q 035707 636 VP-----------------SLVSIARVLRQIGGESMATIRCFLTDALRLDRTNT---TAWYNLGLLYKTYAGASALEA 693 (713)
Q Consensus 636 ~~-----------------~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~~~A 693 (713)
.. --..+|..|.+.|.+. .|+..++.+++..|+.+ .++..++..|..+|. .+.|
T Consensus 124 ~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~--aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~--~~~a 197 (203)
T PF13525_consen 124 EYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYK--AAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGL--KQAA 197 (203)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HH--HHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT---HHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH--HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCC--hHHH
Confidence 21 1234677777778776 78888888888888764 567778888888888 6644
No 130
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.01 E-value=2.8e-08 Score=94.12 Aligned_cols=170 Identities=16% Similarity=0.147 Sum_probs=125.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCc--hHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc-HHHH
Q 035707 439 RDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSN--VKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQ-GELL 515 (713)
Q Consensus 439 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~ 515 (713)
.++..++..|..++..|+|.+|+..|++++...|.++ ..+.+.+|.++...|++++|+..+++.++..|.... ..++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 3567899999999999999999999999999988764 368999999999999999999999999999985332 3467
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 035707 516 RTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSK 595 (713)
Q Consensus 516 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 595 (713)
+.+|.++.... ...+ ......+...+|+..|+..+
T Consensus 83 Y~~g~~~~~~~---------~~~~------------------------------------~~~~D~~~~~~A~~~~~~li 117 (203)
T PF13525_consen 83 YMLGLSYYKQI---------PGIL------------------------------------RSDRDQTSTRKAIEEFEELI 117 (203)
T ss_dssp HHHHHHHHHHH---------HHHH-------------------------------------TT---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC---------ccch------------------------------------hcccChHHHHHHHHHHHHHH
Confidence 77777655431 0000 11222344667888888888
Q ss_pred hcCCCChhH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcCCC
Q 035707 596 AINPYSASG-----------------WHSTGLLYEAKGLQQEALVSFRKALDAEPNHV---PSLVSIARVLRQIGGES 653 (713)
Q Consensus 596 ~~~p~~~~~-----------------~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~ 653 (713)
...|++..+ -+.+|..|.+.|.+..|+..++.+++..|+.. +++..++..|.++|..+
T Consensus 118 ~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 118 KRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 888877432 34578899999999999999999999999875 57888899999999874
No 131
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.00 E-value=1.1e-07 Score=92.17 Aligned_cols=181 Identities=14% Similarity=0.036 Sum_probs=116.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchH---HHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCC-cHHH
Q 035707 439 RDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVK---GYLLLARVLSAQKQFADAESVINDSLDQTGKWD-QGEL 514 (713)
Q Consensus 439 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~ 514 (713)
.++..++..|..+...|++++|+..|++++...|..+ . +.+.+|.++.+.+++++|+..+++.++.+|... ...+
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~-~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGP-YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 4677788999999999999999999999999999876 4 458899999999999999999999999987533 3457
Q ss_pred HHHHHHHHHHhC---------------C---HHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHH
Q 035707 515 LRTKAKLQIAQG---------------R---LKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLAN 576 (713)
Q Consensus 515 ~~~la~~~~~~g---------------~---~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 576 (713)
++.+|.++...+ + ..+|+..|+++++..|+..-.-.....+.. .......--...|.
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~-----l~~~la~~e~~ia~ 183 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVF-----LKDRLAKYELSVAE 183 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 888887764443 1 357889999999998865221111000000 00001222223444
Q ss_pred HHHHCCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHH
Q 035707 577 VYTSLSQWRDAEVCLSKSKAINPYS---ASGWHSTGLLYEAKGLQQEALVSF 625 (713)
Q Consensus 577 ~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~ 625 (713)
.|.+.|.|..|+.-++.+++..|+. .+++..++..|...|..++|....
T Consensus 184 ~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 184 YYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred HHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 5555555555555555555554443 334445555555555555554433
No 132
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.99 E-value=1.6e-07 Score=91.18 Aligned_cols=188 Identities=13% Similarity=0.017 Sum_probs=144.0
Q ss_pred CChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHH
Q 035707 353 DCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETA 432 (713)
Q Consensus 353 ~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 432 (713)
..+..++..|..++..|++. +|+..|++++. ..|..+ ....+.+++|.+| .+.+++++|+..+++.
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~-~Ai~~f~~l~~-~yP~s~-~a~~a~l~la~ay-----------y~~~~y~~A~~~~e~f 95 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWK-QAITQLEALDN-RYPFGP-YSQQVQLDLIYAY-----------YKNADLPLAQAAIDRF 95 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHH-hCCCCh-HHHHHHHHHHHHH-----------HhcCCHHHHHHHHHHH
Confidence 35677888899999999999 99999999999 778764 5556779999999 8889999999999999
Q ss_pred HHhhCCCC---HHHHHHHHHHHHHcC---------------C---HHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCC
Q 035707 433 EKTMRERD---PYIIYHLCLENAEQR---------------K---LDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQ 491 (713)
Q Consensus 433 l~~~~p~~---~~~~~~la~~~~~~g---------------~---~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~ 491 (713)
+ +..|++ +.+++.+|.++...+ + ..+|+..|+++++..|++. .
T Consensus 96 i-~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~-y-------------- 159 (243)
T PRK10866 96 I-RLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ-Y-------------- 159 (243)
T ss_pred H-HhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh-h--------------
Confidence 9 998876 457888888764443 1 2467888999999999865 2
Q ss_pred HHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHH
Q 035707 492 FADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETW 571 (713)
Q Consensus 492 ~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (713)
..+|...+..+-. .-..--...|..|.+.|.|..|+..++.+++..|+. +...+++
T Consensus 160 a~~A~~rl~~l~~-----~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t-------------------~~~~eal 215 (243)
T PRK10866 160 TTDATKRLVFLKD-----RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDT-------------------QATRDAL 215 (243)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCC-------------------chHHHHH
Confidence 1222222211111 111223467888999999999999999999998765 5668899
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Q 035707 572 HDLANVYTSLSQWRDAEVCLSKS 594 (713)
Q Consensus 572 ~~la~~~~~~g~~~~A~~~~~~a 594 (713)
..++..|...|..++|.......
T Consensus 216 ~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 216 PLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHcCChHHHHHHHHHH
Confidence 99999999999999998776543
No 133
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.99 E-value=5.3e-09 Score=90.23 Aligned_cols=105 Identities=18% Similarity=0.224 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHH
Q 035707 568 METWHDLANVYTSLSQWRDAEVCLSKSKAINPYS---ASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNH---VPSLVS 641 (713)
Q Consensus 568 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~ 641 (713)
+.+++.+|..+...|++++|+..|++++..+|++ +.+++.+|.++...|++++|+..|++++..+|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4556667777777777777777777777666654 3566667777777777777777777777666654 456666
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHH
Q 035707 642 IARVLRQIGGESMATIRCFLTDALRLDRTNTTA 674 (713)
Q Consensus 642 la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~ 674 (713)
+|.++...|+++ +|+.+++++++..|+++.+
T Consensus 82 ~~~~~~~~~~~~--~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 82 LGMSLQELGDKE--KAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHhCChH--HHHHHHHHHHHHCcCChhH
Confidence 777777777665 6777777777776666543
No 134
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.98 E-value=9.6e-09 Score=88.60 Aligned_cols=104 Identities=12% Similarity=0.105 Sum_probs=96.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC---HHHH
Q 035707 602 ASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNH---VPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTN---TTAW 675 (713)
Q Consensus 602 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~---~~~~ 675 (713)
+.+++.+|..+...|++++|+..|.+++..+|++ ..+++.+|.++...|+++ +|+..|++++..+|++ +.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYA--DAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHH--HHHHHHHHHHHHCCCCCcccHHH
Confidence 4678999999999999999999999999999876 578999999999999997 9999999999998885 6789
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHccccCCCC
Q 035707 676 YNLGLLYKTYAGASALEAVECFEAAALLEESAPV 709 (713)
Q Consensus 676 ~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~~~ 709 (713)
+.+|.++...|+ +++|..+|++++...|+++.
T Consensus 80 ~~~~~~~~~~~~--~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 80 LKLGMSLQELGD--KEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHHHhCC--hHHHHHHHHHHHHHCcCChh
Confidence 999999999999 99999999999999999874
No 135
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.96 E-value=2e-08 Score=92.45 Aligned_cols=103 Identities=11% Similarity=0.074 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHH
Q 035707 492 FADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETW 571 (713)
Q Consensus 492 ~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (713)
+..+...+...++..+.......++.+|.++...|++++|+..|++++.+.|+. +..+.+|
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-------------------~~~~~~~ 75 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP-------------------YDRSYIL 75 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc-------------------hhhHHHH
Confidence 444444444443343322334556666666666666666666666666653321 2224466
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 035707 572 HDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYE 613 (713)
Q Consensus 572 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 613 (713)
.++|.++...|++++|+.++++++.+.|.....+..+|.++.
T Consensus 76 ~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 76 YNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666665
No 136
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.95 E-value=1.4e-07 Score=105.53 Aligned_cols=237 Identities=12% Similarity=0.058 Sum_probs=190.0
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-hcCCc---hHHHHHHHHHHHHcCCHHHHHHH
Q 035707 423 SQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNL-EARSN---VKGYLLLARVLSAQKQFADAESV 498 (713)
Q Consensus 423 ~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~---~~~~~~la~~~~~~g~~~~A~~~ 498 (713)
.+..+.|++.+ ..+|+....|...-..+.+.++.++|.+.+++++.. ++... ...|..+-++...-|.-+.-.+.
T Consensus 1441 pesaeDferlv-rssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1441 PESAEDFERLV-RSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CcCHHHHHHHH-hcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 44567788888 888999989988888888999999999999999863 33221 14777777777777878888889
Q ss_pred HHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHH
Q 035707 499 INDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVY 578 (713)
Q Consensus 499 ~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 578 (713)
|++|.+.. +...++..+..+|...+++++|.++|+.+++... ....+|..++..+
T Consensus 1520 FeRAcqyc---d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~----------------------q~~~vW~~y~~fL 1574 (1710)
T KOG1070|consen 1520 FERACQYC---DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG----------------------QTRKVWIMYADFL 1574 (1710)
T ss_pred HHHHHHhc---chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc----------------------chhhHHHHHHHHH
Confidence 99988875 3466788889999999999999999999988753 2378999999999
Q ss_pred HHCCCHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHH
Q 035707 579 TSLSQWRDAEVCLSKSKAINPY--SASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMAT 656 (713)
Q Consensus 579 ~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~ 656 (713)
+++.+-+.|...+.++++.-|. +.......+.+.++.|+.+.+...|+-.+..+|...+.|.-+...-.+.|+.. -
T Consensus 1575 l~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~--~ 1652 (1710)
T KOG1070|consen 1575 LRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIK--Y 1652 (1710)
T ss_pred hcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHH--H
Confidence 9999999999999999998887 67777888899999999999999999999999999999998888888888876 8
Q ss_pred HHHHHHHHHhhC--CCCHHHHHHHHHHHHH-hCC
Q 035707 657 IRCFLTDALRLD--RTNTTAWYNLGLLYKT-YAG 687 (713)
Q Consensus 657 A~~~~~~al~~~--p~~~~~~~~lg~~~~~-~g~ 687 (713)
++..|++++.+. |......|..=.-|.+ .|+
T Consensus 1653 vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1653 VRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred HHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 999999998764 4444444444334444 355
No 137
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.95 E-value=1.1e-08 Score=83.93 Aligned_cols=98 Identities=32% Similarity=0.416 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 035707 604 GWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYK 683 (713)
Q Consensus 604 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 683 (713)
+++.+|.++...|++++|+..++++++..|++..++..+|.++...|+++ +|+..+++++...|.++.++..+|.++.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYE--EALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 45667777777777777777777777777777777777777777777776 7777777777777777777777788887
Q ss_pred HhCCCCHHHHHHHHHHHHcccc
Q 035707 684 TYAGASALEAVECFEAAALLEE 705 (713)
Q Consensus 684 ~~g~~~~~~A~~~~~~a~~l~p 705 (713)
..|+ +++|..++++++...|
T Consensus 80 ~~~~--~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 80 KLGK--YEEALEAYEKALELDP 99 (100)
T ss_pred HHHh--HHHHHHHHHHHHccCC
Confidence 7888 8888888877777665
No 138
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.94 E-value=4.6e-07 Score=87.54 Aligned_cols=317 Identities=14% Similarity=0.071 Sum_probs=217.9
Q ss_pred hHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHH----H
Q 035707 355 NLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVAL----E 430 (713)
Q Consensus 355 ~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~----~ 430 (713)
+......|.-.+...++. +|+....+.+..++.... +...+-.+..+.+ +.|.+++++..- .
T Consensus 6 ~k~q~~~g~~Ly~s~~~~-~al~~w~~~L~~l~~~~~--Rf~~lG~l~~a~s-----------~~g~y~~mL~~a~sqi~ 71 (518)
T KOG1941|consen 6 TKKQIEKGLQLYQSNQTE-KALQVWTKVLEKLSDLMG--RFRVLGCLVTAHS-----------EMGRYKEMLKFAVSQID 71 (518)
T ss_pred hHHHHHHHHhHhcCchHH-HHHHHHHHHHHHHHHHHH--HHHHhccchhhhh-----------hhHHHHHHHHHHHHHHH
Confidence 344556666677888888 999999998874332211 1233334445553 444445544432 2
Q ss_pred HHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC----chHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 035707 431 TAEKTMRER--DPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARS----NVKGYLLLARVLSAQKQFADAESVINDSLD 504 (713)
Q Consensus 431 ~al~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 504 (713)
-+. ..... ...++.+++..+.+..++.+++.+-+..+.+.... ...+...++..+..++.++++++.|+.++.
T Consensus 72 ~a~-~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~ 150 (518)
T KOG1941|consen 72 TAR-ELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALR 150 (518)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHH
Confidence 222 21111 24577889999999999999999888877653222 124677799999999999999999999998
Q ss_pred ccCCCCc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCC--CccHHHHHHHHHHHH
Q 035707 505 QTGKWDQ----GELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHD--RSLEMETWHDLANVY 578 (713)
Q Consensus 505 ~~p~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~la~~~ 578 (713)
.....++ ..++..++.++....++++|.-+..++.++..... ..+ ......+.+.++..+
T Consensus 151 ~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~--------------l~d~~~kyr~~~lyhmaVal 216 (518)
T KOG1941|consen 151 YAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYG--------------LKDWSLKYRAMSLYHMAVAL 216 (518)
T ss_pred HhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcC--------------cCchhHHHHHHHHHHHHHHH
Confidence 7532222 34788999999999999999999999998865431 011 112356778899999
Q ss_pred HHCCCHHHHHHHHHHHHhcC------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHH
Q 035707 579 TSLSQWRDAEVCLSKSKAIN------PYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPN------HVPSLVSIARVL 646 (713)
Q Consensus 579 ~~~g~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~------~~~~~~~la~~~ 646 (713)
...|...+|.++.+++.++. +..+.....+|.+|...|+.+.|..-|+++...... .+.++...+.++
T Consensus 217 R~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~ 296 (518)
T KOG1941|consen 217 RLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCL 296 (518)
T ss_pred HHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999997764 223456778999999999999999999999865321 234555555555
Q ss_pred HHhcCCC---hHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHc
Q 035707 647 RQIGGES---MATIRCFLTDALRLDRTN------TTAWYNLGLLYKTYAGASALEAVECFEAAAL 702 (713)
Q Consensus 647 ~~~g~~~---l~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~ 702 (713)
....-.+ -=.|+++-++++++...- ...+..++.+|...|. -++=.+.+.++-+
T Consensus 297 ~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl--~d~~~~h~~ra~~ 359 (518)
T KOG1941|consen 297 ETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGL--QDELRAHVVRAHE 359 (518)
T ss_pred HHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHH
Confidence 4332222 003788877777764321 2456779999999988 7777777776654
No 139
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.92 E-value=6.8e-08 Score=96.84 Aligned_cols=218 Identities=15% Similarity=0.069 Sum_probs=149.9
Q ss_pred hcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc-----CCchHHHHHHHHHHHHcCCHHH
Q 035707 420 LKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEA-----RSNVKGYLLLARVLSAQKQFAD 494 (713)
Q Consensus 420 ~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-----~~~~~~~~~la~~~~~~g~~~~ 494 (713)
.++++|...|.++- ..|...|++++|...|.++....- ......+...+.++... ++++
T Consensus 29 ~~~e~Aa~~y~~Aa---------------~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~ 92 (282)
T PF14938_consen 29 PDYEEAADLYEKAA---------------NCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDE 92 (282)
T ss_dssp HHHHHHHHHHHHHH---------------HHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHH
T ss_pred CCHHHHHHHHHHHH---------------HHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHH
Confidence 36678888877765 577788999999999999876542 22224566666666555 9999
Q ss_pred HHHHHHHHhhccCCCC----cHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHH
Q 035707 495 AESVINDSLDQTGKWD----QGELLRTKAKLQIAQ-GRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEME 569 (713)
Q Consensus 495 A~~~~~~al~~~p~~~----~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (713)
|+.++++++++.-... -...+..+|.+|... |++++|++.|++++...... ........
T Consensus 93 Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e----------------~~~~~a~~ 156 (282)
T PF14938_consen 93 AIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE----------------GSPHSAAE 156 (282)
T ss_dssp HHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT----------------T-HHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC----------------CChhhHHH
Confidence 9999999998742111 245788999999999 99999999999999986543 12233467
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----H
Q 035707 570 TWHDLANVYTSLSQWRDAEVCLSKSKAINPYS-------ASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHV-----P 637 (713)
Q Consensus 570 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~-----~ 637 (713)
++..+|.++...|+|++|+..|++.....-.+ ...+...+.++...|++..|...+++....+|... .
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 88899999999999999999999988753221 13456678889999999999999999999988543 2
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhCC
Q 035707 638 SLVSIARVLRQIGGESMATIRCFLTDALRLDR 669 (713)
Q Consensus 638 ~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p 669 (713)
....+..++-....-.+.+|+.-|.+..+++|
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 33334444433322224466666665555443
No 140
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.90 E-value=4.5e-09 Score=80.46 Aligned_cols=66 Identities=29% Similarity=0.538 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 035707 568 METWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKG-LQQEALVSFRKALDAEP 633 (713)
Q Consensus 568 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~eA~~~~~~al~~~p 633 (713)
+.+|..+|.++...|++++|+.+|+++++++|+++.+++++|.++..+| ++++|+..|+++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 6677888888888888888888888888888888888888888888887 68888888888887776
No 141
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.90 E-value=2e-08 Score=92.66 Aligned_cols=120 Identities=17% Similarity=0.168 Sum_probs=99.5
Q ss_pred CccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 035707 564 RSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYS---ASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLV 640 (713)
Q Consensus 564 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 640 (713)
.+.....++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..|++++...|++..++.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 45567889999999999999999999999999887653 468999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCC
Q 035707 641 SIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALLEESA 707 (713)
Q Consensus 641 ~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~ 707 (713)
.+|.++...|+.. .+...+..++ .. +++|.+++++++.++|++
T Consensus 111 ~lg~~~~~~g~~~--~a~~~~~~A~--------------------~~--~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 111 NIAVIYHKRGEKA--EEAGDQDEAE--------------------AL--FDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHcCChH--hHhhCHHHHH--------------------HH--HHHHHHHHHHHHhhCchh
Confidence 9999999998875 5554444433 34 677788888888777765
No 142
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.90 E-value=1.9e-08 Score=92.61 Aligned_cols=102 Identities=19% Similarity=0.201 Sum_probs=61.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 035707 602 ASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNH---VPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNL 678 (713)
Q Consensus 602 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~l 678 (713)
...++.+|.++...|++++|+..|++++.+.|++ +.++.++|.++...|+++ +|+..+++++.++|.+...+.++
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~--eA~~~~~~Al~~~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHT--KALEYYFQALERNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCcCcHHHHHHH
Confidence 3445566666666666666666666666554432 235666666666666665 66666666666666666666666
Q ss_pred HHHHH-------HhCCCCHH-------HHHHHHHHHHccccCC
Q 035707 679 GLLYK-------TYAGASAL-------EAVECFEAAALLEESA 707 (713)
Q Consensus 679 g~~~~-------~~g~~~~~-------~A~~~~~~a~~l~p~~ 707 (713)
|.++. ..|+ ++ +|..+|++++..+|++
T Consensus 113 a~i~~~~~~~~~~~g~--~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 113 AVICHYRGEQAIEQGD--SEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHhhHHHHHccc--HHHHHHHHHHHHHHHHHHHHhCccc
Confidence 65555 4455 44 6666777777777753
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.89 E-value=7.4e-08 Score=86.06 Aligned_cols=118 Identities=21% Similarity=0.123 Sum_probs=102.5
Q ss_pred HHCCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCC
Q 035707 579 TSLSQWRDAEVCLSKSKAINPYS---ASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNH---VPSLVSIARVLRQIGGE 652 (713)
Q Consensus 579 ~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~ 652 (713)
...+++..+...+++.+...|.+ ..+.+.+|.++...|++++|...|++++...|+. ..+...++.++...|++
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 22 LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 36889999999999999999988 5677889999999999999999999999987665 35788899999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 035707 653 SMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAA 701 (713)
Q Consensus 653 ~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~ 701 (713)
+ +|+..++. +...+-.+.++..+|.+|...|+ +++|+..|++|+
T Consensus 102 d--~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~--~~~A~~~y~~Al 145 (145)
T PF09976_consen 102 D--EALATLQQ-IPDEAFKALAAELLGDIYLAQGD--YDEARAAYQKAL 145 (145)
T ss_pred H--HHHHHHHh-ccCcchHHHHHHHHHHHHHHCCC--HHHHHHHHHHhC
Confidence 8 99999966 33445567788899999999999 999999999985
No 144
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.88 E-value=1.8e-08 Score=82.55 Aligned_cols=99 Identities=22% Similarity=0.343 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 035707 570 TWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQI 649 (713)
Q Consensus 570 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 649 (713)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..|++++...|.+..++..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHhhCCC
Q 035707 650 GGESMATIRCFLTDALRLDRT 670 (713)
Q Consensus 650 g~~~l~~A~~~~~~al~~~p~ 670 (713)
|+++ +|...+.++++..|+
T Consensus 82 ~~~~--~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYE--EALEAYEKALELDPN 100 (100)
T ss_pred HhHH--HHHHHHHHHHccCCC
Confidence 9987 999999999988773
No 145
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=8.6e-07 Score=82.50 Aligned_cols=221 Identities=14% Similarity=0.099 Sum_probs=144.4
Q ss_pred HHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH--------------HHHHHHHHHhh-------------
Q 035707 418 RILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDV--------------ALYYAKKLLNL------------- 470 (713)
Q Consensus 418 ~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~--------------A~~~~~~~l~~------------- 470 (713)
-.|.|..++..-++.. . .+.++.....+...|..+|++.. |+..+...+..
T Consensus 20 Y~Gnyq~~ine~~~~~-~-~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E 97 (299)
T KOG3081|consen 20 YLGNYQQCINEAEKFS-S-SKTDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASLYE 97 (299)
T ss_pred HhhHHHHHHHHHHhhc-c-ccchhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHHHH
Confidence 4677777777666553 2 23677777888888888887643 33333322211
Q ss_pred -----hcCCchHHH-HHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 035707 471 -----EARSNVKGY-LLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQF 544 (713)
Q Consensus 471 -----~p~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 544 (713)
...+. .++ ..-+.++...|++++|+...... .+.++...-..++.+..+.+-|.+.++++.+++.
T Consensus 98 ~~a~~~~~sn-~i~~l~aa~i~~~~~~~deAl~~~~~~-------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ide- 168 (299)
T KOG3081|consen 98 LVADSTDGSN-LIDLLLAAIIYMHDGDFDEALKALHLG-------ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDE- 168 (299)
T ss_pred HHHhhccchh-HHHHHHhhHHhhcCCChHHHHHHHhcc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch-
Confidence 00111 122 23345666777777777776652 3455555666777777777777777777777643
Q ss_pred hhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHH
Q 035707 545 RKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTS----LSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQE 620 (713)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~e 620 (713)
-.++..||..+.. .++..+|.-+|++.-+..|..+...+..+.++..+|+|++
T Consensus 169 -----------------------d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~ee 225 (299)
T KOG3081|consen 169 -----------------------DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEE 225 (299)
T ss_pred -----------------------HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHH
Confidence 2334444444433 3467788888888887777778888888888888888888
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHH
Q 035707 621 ALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTT 673 (713)
Q Consensus 621 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~ 673 (713)
|...++.++..++++++++.++..+-...|... +.-.+++.+....+|+++-
T Consensus 226 Ae~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~-~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 226 AESLLEEALDKDAKDPETLANLIVLALHLGKDA-EVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHhCCCh-HHHHHHHHHHHhcCCcchH
Confidence 888888888888888888888887777778765 3445556666666777653
No 146
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=1.8e-06 Score=80.49 Aligned_cols=165 Identities=13% Similarity=0.039 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHH
Q 035707 441 PYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAK 520 (713)
Q Consensus 441 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~ 520 (713)
......-+.+|.+.|++++|++...... +. ++...-..++.++.+++-|...++++.+.+. ...+..+|.
T Consensus 108 ~i~~l~aa~i~~~~~~~deAl~~~~~~~-----~l-E~~Al~VqI~lk~~r~d~A~~~lk~mq~ide----d~tLtQLA~ 177 (299)
T KOG3081|consen 108 LIDLLLAAIIYMHDGDFDEALKALHLGE-----NL-EAAALNVQILLKMHRFDLAEKELKKMQQIDE----DATLTQLAQ 177 (299)
T ss_pred HHHHHHhhHHhhcCCChHHHHHHHhccc-----hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHccch----HHHHHHHHH
Confidence 3445556788999999999999887632 23 6666677889999999999999999998864 344555655
Q ss_pred HHHH----hCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 035707 521 LQIA----QGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKA 596 (713)
Q Consensus 521 ~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 596 (713)
.+.. .+++.+|.-+|+.+-+.. +..+.....++.++..+|+|++|...++.++.
T Consensus 178 awv~la~ggek~qdAfyifeE~s~k~----------------------~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 178 AWVKLATGGEKIQDAFYIFEELSEKT----------------------PPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred HHHHHhccchhhhhHHHHHHHHhccc----------------------CCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 5543 346778888888876643 34488999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHcCCHHHHHHHH-HHHHhcCCCCHH
Q 035707 597 INPYSASGWHSTGLLYEAKGLQQEALVSF-RKALDAEPNHVP 637 (713)
Q Consensus 597 ~~p~~~~~~~~lg~~~~~~g~~~eA~~~~-~~al~~~p~~~~ 637 (713)
.++++++++.++..+-...|...++..-+ .+....+|+++.
T Consensus 236 kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 236 KDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred ccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 99999999999999999999887776544 555556787764
No 147
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.87 E-value=8.1e-07 Score=99.57 Aligned_cols=219 Identities=12% Similarity=0.075 Sum_probs=192.3
Q ss_pred HHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc-CCC--CcHHHHHHHHHHHHHhCCHHHHHHH
Q 035707 458 DVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQT-GKW--DQGELLRTKAKLQIAQGRLKNAIET 534 (713)
Q Consensus 458 ~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~--~~~~~~~~la~~~~~~g~~~~A~~~ 534 (713)
.+..+.|++.+..+|+.. ..|......+...++.++|.++.++|+..- +.. +-..+|..+-++...-|.-+.-.+.
T Consensus 1441 pesaeDferlvrssPNSS-i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSS-ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CcCHHHHHHHHhcCCCcc-hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 345667889999999998 999999999999999999999999999753 321 2344666666777777877888889
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 035707 535 YVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEA 614 (713)
Q Consensus 535 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 614 (713)
|+++.+... ...++..|..+|...+++++|.++|+.+++...+...+|..+|..+.+
T Consensus 1520 FeRAcqycd-----------------------~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~ 1576 (1710)
T KOG1070|consen 1520 FERACQYCD-----------------------AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLR 1576 (1710)
T ss_pred HHHHHHhcc-----------------------hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 999988742 267888999999999999999999999999988889999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHH
Q 035707 615 KGLQQEALVSFRKALDAEPN--HVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALE 692 (713)
Q Consensus 615 ~g~~~eA~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~ 692 (713)
+++-+.|...+.+|+..-|. |.......|.+-++.|+.+ .++..|+..+..+|.-.+.|.-+...-.+.|. .+.
T Consensus 1577 ~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDae--RGRtlfEgll~ayPKRtDlW~VYid~eik~~~--~~~ 1652 (1710)
T KOG1070|consen 1577 QNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAE--RGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGD--IKY 1652 (1710)
T ss_pred ccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCch--hhHHHHHHHHhhCccchhHHHHHHHHHHccCC--HHH
Confidence 99999999999999999887 8888899999999999997 99999999999999999999999999999999 999
Q ss_pred HHHHHHHHHccc
Q 035707 693 AVECFEAAALLE 704 (713)
Q Consensus 693 A~~~~~~a~~l~ 704 (713)
+...|++++.+.
T Consensus 1653 vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1653 VRDLFERVIELK 1664 (1710)
T ss_pred HHHHHHHHHhcC
Confidence 999999998864
No 148
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.87 E-value=3.6e-06 Score=82.21 Aligned_cols=225 Identities=24% Similarity=0.263 Sum_probs=109.3
Q ss_pred cHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hhcCCchHHHHHHHHHHHHcCCHHHHH
Q 035707 421 KQSQALVALETAEKTMRER--DPYIIYHLCLENAEQRKLDVALYYAKKLLN--LEARSNVKGYLLLARVLSAQKQFADAE 496 (713)
Q Consensus 421 ~~~~A~~~~~~al~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~la~~~~~~g~~~~A~ 496 (713)
.+..+...+.... ...+. ........+..+...+++..+...+...+. ..+... ..+...+......+++..+.
T Consensus 38 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 38 ELAEALELLEEAL-ELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLA-EALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred hHHHHHHHHHHHH-hcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchH-HHHHHHHHHHHHHhhHHHHH
Confidence 3444444444444 33333 244455555555555555555555555554 333333 45555555555555555555
Q ss_pred HHHHHHhhccCCCCcHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHH
Q 035707 497 SVINDSLDQTGKWDQGELLRTKAK-LQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLA 575 (713)
Q Consensus 497 ~~~~~al~~~p~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 575 (713)
..+..++...+. .......... ++...|+++.|+..+.+++...|. .......+...+
T Consensus 116 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-------------------~~~~~~~~~~~~ 174 (291)
T COG0457 116 ELLEKALALDPD--PDLAEALLALGALYELGDYEEALELYEKALELDPE-------------------LNELAEALLALG 174 (291)
T ss_pred HHHHHHHcCCCC--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------------------ccchHHHHHHhh
Confidence 555555554442 1222222222 455555555555555555443220 011233444444
Q ss_pred HHHHHCCCHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCCh
Q 035707 576 NVYTSLSQWRDAEVCLSKSKAINPY-SASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESM 654 (713)
Q Consensus 576 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l 654 (713)
..+...++++.|+..+.+++...+. ....+..++..+...+++++|+..+..++...|.....+..++..+...+..+
T Consensus 175 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 253 (291)
T COG0457 175 ALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYE- 253 (291)
T ss_pred hHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHH-
Confidence 4445555555555555555555555 35555555555555555555555555555555554444444444444333333
Q ss_pred HHHHHHHHHHHhhCCC
Q 035707 655 ATIRCFLTDALRLDRT 670 (713)
Q Consensus 655 ~~A~~~~~~al~~~p~ 670 (713)
++...+.+++...|.
T Consensus 254 -~~~~~~~~~~~~~~~ 268 (291)
T COG0457 254 -EALEALEKALELDPD 268 (291)
T ss_pred -HHHHHHHHHHHhCcc
Confidence 555555555555544
No 149
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.87 E-value=6.5e-08 Score=104.01 Aligned_cols=137 Identities=12% Similarity=0.010 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC--------CHHHHHHHHHHHHhc--CCC
Q 035707 568 METWHDLANVYTSLSQ---WRDAEVCLSKSKAINPYSASGWHSTGLLYEAKG--------LQQEALVSFRKALDA--EPN 634 (713)
Q Consensus 568 ~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--------~~~eA~~~~~~al~~--~p~ 634 (713)
+.-++..|..+...++ ...|+.+|+++++++|+++.++..++.++.... +...+....++++.+ +|.
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~ 418 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNV 418 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcC
Confidence 3444556666665544 779999999999999999999998888775542 234566666776664 777
Q ss_pred CHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCCCC
Q 035707 635 HVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALLEESAPV 709 (713)
Q Consensus 635 ~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~~~ 709 (713)
++.++..+|..+...|+++ +|...+++++.++| +..+|..+|.++...|+ +++|.+.|++|+.++|.+|.
T Consensus 419 ~~~~~~ala~~~~~~g~~~--~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~--~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTD--EAYQAINKAIDLEM-SWLNYVLLGKVYELKGD--NRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred ChHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCch
Confidence 7888999999999999987 99999999999999 57899999999999999 99999999999999999884
No 150
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.86 E-value=5.4e-09 Score=80.05 Aligned_cols=67 Identities=30% Similarity=0.442 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHcccc
Q 035707 635 HVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYA-GASALEAVECFEAAALLEE 705 (713)
Q Consensus 635 ~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~~~A~~~~~~a~~l~p 705 (713)
++..|..+|.++...|+++ +|+.+|+++++.+|+++.+|+++|.+|...| + +++|+.+|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~--~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~--~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYE--EAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKD--YEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHH--HHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTH--HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCcc--HHHHHHHHHHHHHcCc
Confidence 3455555666666666554 5666666666666666666666666666665 5 5666666666665554
No 151
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.85 E-value=1.5e-07 Score=84.15 Aligned_cols=120 Identities=21% Similarity=0.122 Sum_probs=56.2
Q ss_pred cCCHHHHHHHHHHHhhccCCC-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccH
Q 035707 489 QKQFADAESVINDSLDQTGKW-DQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLE 567 (713)
Q Consensus 489 ~g~~~~A~~~~~~al~~~p~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (713)
.++...+...++..+..+|.. ....+.+.+|.++...|++++|+..|+.++...|+. ...
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~-------------------~l~ 84 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDP-------------------ELK 84 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH-------------------HHH
Confidence 344444444445544444421 112334445555555555555555555555442211 122
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 035707 568 METWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKA 628 (713)
Q Consensus 568 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~a 628 (713)
..+...++.++...|++++|+..++. +...+..+.++..+|.++...|++++|+..|+++
T Consensus 85 ~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 85 PLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 34445555555555555555555543 2222233444555555555555555555555544
No 152
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=6.6e-08 Score=92.56 Aligned_cols=121 Identities=16% Similarity=0.136 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHH
Q 035707 528 LKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHS 607 (713)
Q Consensus 528 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 607 (713)
.+.-+.-++.-+..+|+ +.+-|..||.+|..+|++..|...|.+++++.|++++.+..
T Consensus 138 ~~~l~a~Le~~L~~nP~----------------------d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g 195 (287)
T COG4235 138 MEALIARLETHLQQNPG----------------------DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLG 195 (287)
T ss_pred HHHHHHHHHHHHHhCCC----------------------CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHH
Confidence 45555566666666554 49999999999999999999999999999999999999999
Q ss_pred HHHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCH
Q 035707 608 TGLLYEAKG---LQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNT 672 (713)
Q Consensus 608 lg~~~~~~g---~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~ 672 (713)
+|.++..+. ...++...+++++..+|.++.+...+|..++..|++. +|...++..++..|.+.
T Consensus 196 ~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~--~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 196 LAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYA--EAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHH--HHHHHHHHHHhcCCCCC
Confidence 999877654 4678999999999999999999999999999999997 99999999999887654
No 153
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.82 E-value=1.7e-08 Score=76.08 Aligned_cols=64 Identities=20% Similarity=0.391 Sum_probs=46.9
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 035707 573 DLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHV 636 (713)
Q Consensus 573 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 636 (713)
.+|..+...|++++|+.+|+++++.+|.++.+|+.+|.++..+|++++|+..|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4667777777777777777777777777777777777777777777777777777777777654
No 154
>PRK11906 transcriptional regulator; Provisional
Probab=98.80 E-value=1.7e-07 Score=95.32 Aligned_cols=171 Identities=17% Similarity=0.098 Sum_probs=133.3
Q ss_pred HHHHHHHHHhcCCCh--HHHHHHHHHHH---HhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHH
Q 035707 358 LLVASKICAENKVCI--EEGITYARKAL---SMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETA 432 (713)
Q Consensus 358 ~~~~a~~~~~~g~~~--~~A~~~~~~al---~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 432 (713)
+++.|...+.++.-. +.|..+|.+++ . .+|... .++..++.|+....-...+. ......+|.+.-+++
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~-ldp~~a----~a~~~lA~~h~~~~~~g~~~--~~~~~~~a~~~A~rA 330 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSD-IQTLKT----ECYCLLAECHMSLALHGKSE--LELAAQKALELLDYV 330 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhccc-CCcccH----HHHHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHHH
Confidence 356665554444322 27888999999 6 777777 99999999986442221111 356678999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcH
Q 035707 433 EKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQG 512 (713)
Q Consensus 433 l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 512 (713)
+ .++|.|+.++..+|.+....++++.|...|++++.++|+.. .+|+..|.++...|+.++|...++++++++|...-.
T Consensus 331 v-eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A-~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 331 S-DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIA-SLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred H-hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccH-HHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 9 99999999999999999999999999999999999999999 999999999999999999999999999999942222
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH
Q 035707 513 ELLRTKAKLQIAQGRLKNAIETYVNL 538 (713)
Q Consensus 513 ~~~~~la~~~~~~g~~~~A~~~~~~~ 538 (713)
.........| -....++|+..|-+-
T Consensus 409 ~~~~~~~~~~-~~~~~~~~~~~~~~~ 433 (458)
T PRK11906 409 VVIKECVDMY-VPNPLKNNIKLYYKE 433 (458)
T ss_pred HHHHHHHHHH-cCCchhhhHHHHhhc
Confidence 2222222234 355678888887653
No 155
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.80 E-value=1.2e-06 Score=78.84 Aligned_cols=197 Identities=17% Similarity=0.082 Sum_probs=144.1
Q ss_pred hHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Q 035707 393 MASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEA 472 (713)
Q Consensus 393 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 472 (713)
.++..++-.|..| ...|-..-|.-.|.+++ .+.|+-+.++..+|..+...|+|+.|.+.|...++++|
T Consensus 63 eRA~l~fERGvlY-----------DSlGL~~LAR~DftQaL-ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp 130 (297)
T COG4785 63 ERAQLLFERGVLY-----------DSLGLRALARNDFSQAL-AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 130 (297)
T ss_pred HHHHHHHHhcchh-----------hhhhHHHHHhhhhhhhh-hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCC
Confidence 3457788888888 88899999999999999 99999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHhhhhhhhhh
Q 035707 473 RSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVN-LLAVLQFRKKSFSA 551 (713)
Q Consensus 473 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-~l~~~~~~~~~~~~ 551 (713)
... -++.+.|..++.-|++.-|.+-+.+-.+.+|.......|..+ -...-++.+|...+.+ +...+
T Consensus 131 ~y~-Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl---~E~k~dP~~A~tnL~qR~~~~d--------- 197 (297)
T COG4785 131 TYN-YAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYL---NEQKLDPKQAKTNLKQRAEKSD--------- 197 (297)
T ss_pred cch-HHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHH---HHhhCCHHHHHHHHHHHHHhcc---------
Confidence 998 899999999999999999999999998888842222233322 2334567777655443 22221
Q ss_pred hhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-------hhHHHHHHHHHHHcCCHHHHHHH
Q 035707 552 GKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYS-------ASGWHSTGLLYEAKGLQQEALVS 624 (713)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~eA~~~ 624 (713)
.+..-|+... .| .|+..+ ...++++.+...++ .++++.+|..+...|+.++|...
T Consensus 198 --------------~e~WG~~iV~-~y--LgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~L 259 (297)
T COG4785 198 --------------KEQWGWNIVE-FY--LGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATAL 259 (297)
T ss_pred --------------HhhhhHHHHH-HH--HhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 1223333222 22 222211 22334443333332 45788999999999999999999
Q ss_pred HHHHHhcC
Q 035707 625 FRKALDAE 632 (713)
Q Consensus 625 ~~~al~~~ 632 (713)
|+-++..+
T Consensus 260 fKLaiann 267 (297)
T COG4785 260 FKLAVANN 267 (297)
T ss_pred HHHHHHHh
Confidence 99888754
No 156
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.80 E-value=5.7e-06 Score=80.76 Aligned_cols=224 Identities=27% Similarity=0.267 Sum_probs=173.2
Q ss_pred cCCHHHHHHHHHHHHhhhcCC--chHHHHHHHHHHHHcCCHHHHHHHHHHHhh--ccCCCCcHHHHHHHHHHHHHhCCHH
Q 035707 454 QRKLDVALYYAKKLLNLEARS--NVKGYLLLARVLSAQKQFADAESVINDSLD--QTGKWDQGELLRTKAKLQIAQGRLK 529 (713)
Q Consensus 454 ~g~~~~A~~~~~~~l~~~p~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~la~~~~~~g~~~ 529 (713)
.+.+..+...+...+...+.. . ......+..+...+++..+...+...+. ..+ .....+...+......+++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 112 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLA-GLLLLLALALLKLGRLEEALELLEKALELELLP--NLAEALLNLGLLLEALGKYE 112 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccch-HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhcc--chHHHHHHHHHHHHHHhhHH
Confidence 466777777777777776653 4 6777788888888888888888888876 444 56777888888888888888
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHhcCC---CChhHH
Q 035707 530 NAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLAN-VYTSLSQWRDAEVCLSKSKAINP---YSASGW 605 (713)
Q Consensus 530 ~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p---~~~~~~ 605 (713)
.++..+..++...+.. .......+. ++...|+++.|...+.+++...| ......
T Consensus 113 ~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (291)
T COG0457 113 EALELLEKALALDPDP----------------------DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEAL 170 (291)
T ss_pred HHHHHHHHHHcCCCCc----------------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHH
Confidence 8888888888866643 222333333 78888888888888888887666 345566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 035707 606 HSTGLLYEAKGLQQEALVSFRKALDAEPN-HVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKT 684 (713)
Q Consensus 606 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 684 (713)
...+..+...+++++|+..+.+++...+. ....+..++..+...++++ .|...+..++...|.....+..++..+..
T Consensus 171 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (291)
T COG0457 171 LALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE--EALEYYEKALELDPDNAEALYNLALLLLE 248 (291)
T ss_pred HHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHH--HHHHHHHHHHhhCcccHHHHhhHHHHHHH
Confidence 66666677888888888888888888888 6888888888888888776 88888888888888777777788888777
Q ss_pred hCCCCHHHHHHHHHHHHccccC
Q 035707 685 YAGASALEAVECFEAAALLEES 706 (713)
Q Consensus 685 ~g~~~~~~A~~~~~~a~~l~p~ 706 (713)
.|. ++++...+.+++...|.
T Consensus 249 ~~~--~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 249 LGR--YEEALEALEKALELDPD 268 (291)
T ss_pred cCC--HHHHHHHHHHHHHhCcc
Confidence 788 88888888888887764
No 157
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.79 E-value=7.5e-09 Score=78.11 Aligned_cols=64 Identities=31% Similarity=0.425 Sum_probs=40.3
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCCC
Q 035707 641 SIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALLEESAP 708 (713)
Q Consensus 641 ~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~~ 708 (713)
.+|..+...|+++ +|+..|+++++.+|+++.+|+.+|.++...|+ +++|+..|+++++.+|++|
T Consensus 2 ~~a~~~~~~g~~~--~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~--~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYD--EAIAAFEQALKQDPDNPEAWYLLGRILYQQGR--YDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHH--HHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHH--HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHCcCCC
Confidence 3556666666665 66666666666666666666666666666666 6666666666666666654
No 158
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.79 E-value=2.7e-08 Score=79.40 Aligned_cols=83 Identities=24% Similarity=0.256 Sum_probs=65.8
Q ss_pred hCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhH
Q 035707 525 QGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASG 604 (713)
Q Consensus 525 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 604 (713)
+|++++|+..++++++..|.+ + +...|+.+|.+|++.|++++|+.++++ ...+|.+...
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~-------------------~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~ 60 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTN-------------------P-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDI 60 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGT-------------------H-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCC-------------------h-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHH
Confidence 578888888888888887632 2 466777888888888888888888888 7777777788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 035707 605 WHSTGLLYEAKGLQQEALVSFRKA 628 (713)
Q Consensus 605 ~~~lg~~~~~~g~~~eA~~~~~~a 628 (713)
.+.+|.++..+|++++|++.|+++
T Consensus 61 ~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 61 HYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHhcC
Confidence 888888888888888888888764
No 159
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.78 E-value=2.7e-06 Score=82.34 Aligned_cols=274 Identities=14% Similarity=0.110 Sum_probs=196.3
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhh-hccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCC
Q 035707 362 SKICAENKVCIEEGITYARKALSML-QGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERD 440 (713)
Q Consensus 362 a~~~~~~g~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~ 440 (713)
..+...+|.+. +++.+.-..+... +-++..+.-.++..++..+ ++..++.+++.+-.-.+ .+....
T Consensus 50 ~~a~s~~g~y~-~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~-----------e~l~~f~kt~~y~k~~l-~lpgt~ 116 (518)
T KOG1941|consen 50 VTAHSEMGRYK-EMLKFAVSQIDTARELEDSDFLLEAYLNLARSN-----------EKLCEFHKTISYCKTCL-GLPGTR 116 (518)
T ss_pred hhhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHhhhHHHHHHHHh-cCCCCC
Confidence 34556677777 6666555444421 2233445567888888888 88888899988877766 554322
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCc-----hHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCC--
Q 035707 441 -----PYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSN-----VKGYLLLARVLSAQKQFADAESVINDSLDQTGK-- 508 (713)
Q Consensus 441 -----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-- 508 (713)
......++.++...+.++++++.|+.+++....+. ..++..+|..+...+++++|.-+..++.++...
T Consensus 117 ~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~ 196 (518)
T KOG1941|consen 117 AGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYG 196 (518)
T ss_pred cccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcC
Confidence 35677799999999999999999999998654332 247889999999999999999999999877421
Q ss_pred ---CC---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCC
Q 035707 509 ---WD---QGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLS 582 (713)
Q Consensus 509 ---~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 582 (713)
|. ...+++.++..+..+|+.-+|.+..+++.++.-. ..+.+........+|++|...|
T Consensus 197 l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~----------------~Gdra~~arc~~~~aDIyR~~g 260 (518)
T KOG1941|consen 197 LKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQ----------------HGDRALQARCLLCFADIYRSRG 260 (518)
T ss_pred cCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH----------------hCChHHHHHHHHHHHHHHHhcc
Confidence 11 1236778899999999999999999999887542 3445666888899999999999
Q ss_pred CHHHHHHHHHHHHhcCCC------ChhHHHHHHHHHHHcCCHH-----HHHHHHHHHHhcCCC----C--HHHHHHHHHH
Q 035707 583 QWRDAEVCLSKSKAINPY------SASGWHSTGLLYEAKGLQQ-----EALVSFRKALDAEPN----H--VPSLVSIARV 645 (713)
Q Consensus 583 ~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~-----eA~~~~~~al~~~p~----~--~~~~~~la~~ 645 (713)
+.+.|..-|+++...... ...++...+.++....-.. .|++.-++++++... . ...+..++.+
T Consensus 261 d~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~i 340 (518)
T KOG1941|consen 261 DLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASI 340 (518)
T ss_pred cHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 999999999998765321 1234444555554443333 378777777765432 1 2467788999
Q ss_pred HHHhcCCChHHHHHHHHHHHh
Q 035707 646 LRQIGGESMATIRCFLTDALR 666 (713)
Q Consensus 646 ~~~~g~~~l~~A~~~~~~al~ 666 (713)
|..+|..+ +-...+.++-+
T Consensus 341 Yrs~gl~d--~~~~h~~ra~~ 359 (518)
T KOG1941|consen 341 YRSKGLQD--ELRAHVVRAHE 359 (518)
T ss_pred HHhccchh--HHHHHHHHHHH
Confidence 99888876 55555555443
No 160
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.78 E-value=1.5e-07 Score=94.33 Aligned_cols=206 Identities=16% Similarity=0.138 Sum_probs=141.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhccCC----CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 035707 481 LLARVLSAQKQFADAESVINDSLDQTGK----WDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLV 556 (713)
Q Consensus 481 ~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 556 (713)
..|.+|...|++++|...|.++.+..-. ......+...+.++... ++++|+..|++++.+....
T Consensus 40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~----------- 107 (282)
T PF14938_consen 40 KAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA----------- 107 (282)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc-----------
Confidence 3456677778888888888888665311 12234556666666555 9999999999999986432
Q ss_pred hhcccCCCccHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 035707 557 KNRQNHDRSLEMETWHDLANVYTSL-SQWRDAEVCLSKSKAINPYS------ASGWHSTGLLYEAKGLQQEALVSFRKAL 629 (713)
Q Consensus 557 ~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~eA~~~~~~al 629 (713)
.....-..++..+|.+|... |++++|+++|+++..+.... ...+..+|.++...|+|++|++.|++..
T Consensus 108 -----G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 108 -----GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVA 182 (282)
T ss_dssp -----T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred -----CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 22233478899999999999 99999999999999864221 3467789999999999999999999998
Q ss_pred hcCCCC------H-HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHhCCCCHHHHHHHH
Q 035707 630 DAEPNH------V-PSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNT-----TAWYNLGLLYKTYAGASALEAVECF 697 (713)
Q Consensus 630 ~~~p~~------~-~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~-----~~~~~lg~~~~~~g~~~~~~A~~~~ 697 (713)
...-++ + ..+...+.++...|+.. .|...+++....+|... .....|-..+.....+.+.+|+.-|
T Consensus 183 ~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v--~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~ 260 (282)
T PF14938_consen 183 KKCLENNLLKYSAKEYFLKAILCHLAMGDYV--AARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEY 260 (282)
T ss_dssp HTCCCHCTTGHHHHHHHHHHHHHHHHTT-HH--HHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHH
T ss_pred HHhhcccccchhHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 753221 1 34456677888888876 99999999999988532 2344455555443322488888888
Q ss_pred HHHHcccc
Q 035707 698 EAAALLEE 705 (713)
Q Consensus 698 ~~a~~l~p 705 (713)
.+...++|
T Consensus 261 d~~~~ld~ 268 (282)
T PF14938_consen 261 DSISRLDN 268 (282)
T ss_dssp TTSS---H
T ss_pred cccCccHH
Confidence 77666554
No 161
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.78 E-value=2.4e-08 Score=79.75 Aligned_cols=79 Identities=20% Similarity=0.222 Sum_probs=45.5
Q ss_pred hcHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHH
Q 035707 420 LKQSQALVALETAEKTMRER--DPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAES 497 (713)
Q Consensus 420 ~~~~~A~~~~~~al~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~ 497 (713)
|+++.|+..|++++ ..+|. +...++.+|.+|++.|++++|+..+++ .+.+|.+. ..++.+|.++..+|++++|+.
T Consensus 3 ~~y~~Ai~~~~k~~-~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~-~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLL-ELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNP-DIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHH-HHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHH-HHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHH-HHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCH-HHHHHHHHHHHHhCCHHHHHH
Confidence 45566666666666 55553 344555566666666666666666666 55555554 555555666666666666666
Q ss_pred HHHH
Q 035707 498 VIND 501 (713)
Q Consensus 498 ~~~~ 501 (713)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 162
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.77 E-value=3.3e-07 Score=98.66 Aligned_cols=153 Identities=14% Similarity=0.058 Sum_probs=100.6
Q ss_pred hhCCCCHHHH--HHHHHHHHHcCC---HHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC
Q 035707 435 TMRERDPYII--YHLCLENAEQRK---LDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKW 509 (713)
Q Consensus 435 ~~~p~~~~~~--~~la~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 509 (713)
...|.++.+| +..|..+...++ ..+|+.+|+++++++|++. .++-.++.++.....+ .+
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a-~a~A~la~~~~~~~~~-------------~~-- 394 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFT-YAQAEKALADIVRHSQ-------------QP-- 394 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHHHhc-------------CC--
Confidence 3446666655 556666666554 7789999999999999988 8887777666433211 11
Q ss_pred CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHH
Q 035707 510 DQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEV 589 (713)
Q Consensus 510 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 589 (713)
.. ..+...+.+..++++.... .+..+.++..+|..+...|++++|..
T Consensus 395 ~~-------------~~~l~~a~~~~~~a~al~~--------------------~~~~~~~~~ala~~~~~~g~~~~A~~ 441 (517)
T PRK10153 395 LD-------------EKQLAALSTELDNIVALPE--------------------LNVLPRIYEILAVQALVKGKTDEAYQ 441 (517)
T ss_pred cc-------------HHHHHHHHHHHHHhhhccc--------------------CcCChHHHHHHHHHHHhcCCHHHHHH
Confidence 00 0122344444445444311 12225667777777777788888888
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 035707 590 CLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVP 637 (713)
Q Consensus 590 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~ 637 (713)
.+++++.++| +..+|..+|.++...|++++|+..|++|+.++|.++.
T Consensus 442 ~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 442 AINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 8888888887 5677788888888888888888888888888877664
No 163
>PRK11906 transcriptional regulator; Provisional
Probab=98.77 E-value=1.8e-07 Score=95.24 Aligned_cols=161 Identities=14% Similarity=0.049 Sum_probs=128.5
Q ss_pred HHHHHHHHHhCC---HHHHHHHHHHHH---HHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHC--------
Q 035707 516 RTKAKLQIAQGR---LKNAIETYVNLL---AVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSL-------- 581 (713)
Q Consensus 516 ~~la~~~~~~g~---~~~A~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-------- 581 (713)
+..|......+. .+.|+.+|.+++ .++| ....++..++.+++..
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp----------------------~~a~a~~~lA~~h~~~~~~g~~~~ 316 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQT----------------------LKTECYCLLAECHMSLALHGKSEL 316 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCc----------------------ccHHHHHHHHHHHHHHHHhcCCCc
Confidence 444444444433 456888889988 5544 4478888888877653
Q ss_pred -CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHH
Q 035707 582 -SQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCF 660 (713)
Q Consensus 582 -g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~ 660 (713)
....+|....+++++++|.++.++..+|.+....++++.|...|++++.++|+.+.+|+..|++....|+.+ +|+..
T Consensus 317 ~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~--~a~~~ 394 (458)
T PRK11906 317 ELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIE--EARIC 394 (458)
T ss_pred hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHH--HHHHH
Confidence 345678899999999999999999999999999999999999999999999999999999999999999997 99999
Q ss_pred HHHHHhhCCCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHc
Q 035707 661 LTDALRLDRTNTTAWYNLGLL-YKTYAGASALEAVECFEAAAL 702 (713)
Q Consensus 661 ~~~al~~~p~~~~~~~~lg~~-~~~~g~~~~~~A~~~~~~a~~ 702 (713)
++++++++|....+-...-++ .+-... .++|+..|-+--+
T Consensus 395 i~~alrLsP~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 435 (458)
T PRK11906 395 IDKSLQLEPRRRKAVVIKECVDMYVPNP--LKNNIKLYYKETE 435 (458)
T ss_pred HHHHhccCchhhHHHHHHHHHHHHcCCc--hhhhHHHHhhccc
Confidence 999999999876554444444 334455 6888888865433
No 164
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.77 E-value=0.00016 Score=76.34 Aligned_cols=255 Identities=14% Similarity=0.136 Sum_probs=129.6
Q ss_pred hHHHHHhcCChhHHHHHHHHHhccc------CCCChhHHHHHHHHHHHHHhhcCCCCCCCccc------ccccccccCCc
Q 035707 210 LPELYKLAGDPDETILSYRRALLYY------WNLDIETTARIEKKFAVFLLYSGTDASPPNLR------LQMELSFVPRN 277 (713)
Q Consensus 210 l~~~~~~~g~~~eA~~~~~~al~~~------~~~~~~~~~~i~~~~a~~ll~~~~~~~~~~~~------~~~~~~~~~~~ 277 (713)
.-.++..++..++|+..|+...+-+ .-...+.+..+...+-..+...+.+.....+. ......|++.|
T Consensus 550 ae~ifleqn~te~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk~sdgd~laaiqlyika~ 629 (1636)
T KOG3616|consen 550 AEMIFLEQNATEEAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELKESDGDGLAAIQLYIKAG 629 (1636)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhccccCccHHHHHHHHHcC
Confidence 3356777888888888887664321 11222333333444444444444432111110 11112233333
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHH
Q 035707 278 NIEEAVLLLLILLKKIVLGKIEWDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLE 357 (713)
Q Consensus 278 ~~eeA~~ll~~~~~~~~l~~~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~ 357 (713)
....|...- +.. .....+..+..+++.++.+..-|+.|-..||++-. |
T Consensus 630 ~p~~a~~~a---~n~---~~l~~de~il~~ia~alik~elydkagdlfeki~d---------------------~----- 677 (1636)
T KOG3616|consen 630 KPAKAARAA---LND---EELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------------------F----- 677 (1636)
T ss_pred CchHHHHhh---cCH---HHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------------------H-----
Confidence 333332211 001 11223778889999999988888999898888632 2
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhC
Q 035707 358 LLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMR 437 (713)
Q Consensus 358 ~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 437 (713)
..+.-|++.|+--.+|+++.+-+. |... ...-...|.-+ ...|+++.|+..|-++-
T Consensus 678 --dkale~fkkgdaf~kaielarfaf----p~ev---v~lee~wg~hl-----------~~~~q~daainhfiea~---- 733 (1636)
T KOG3616|consen 678 --DKALECFKKGDAFGKAIELARFAF----PEEV---VKLEEAWGDHL-----------EQIGQLDAAINHFIEAN---- 733 (1636)
T ss_pred --HHHHHHHHcccHHHHHHHHHHhhC----cHHH---hhHHHHHhHHH-----------HHHHhHHHHHHHHHHhh----
Confidence 233456666654436666554432 2111 12223345555 66777777777776553
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHH
Q 035707 438 ERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRT 517 (713)
Q Consensus 438 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 517 (713)
....-.......++|.+|+..++......... ..+-.++.-|...|+|+-|.+.|.++- ....
T Consensus 734 -----~~~kaieaai~akew~kai~ildniqdqk~~s--~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~d 796 (1636)
T KOG3616|consen 734 -----CLIKAIEAAIGAKEWKKAISILDNIQDQKTAS--GYYGEIADHYANKGDFEIAEELFTEAD----------LFKD 796 (1636)
T ss_pred -----hHHHHHHHHhhhhhhhhhHhHHHHhhhhcccc--ccchHHHHHhccchhHHHHHHHHHhcc----------hhHH
Confidence 11122233344556666666666544332221 344556666666777777766665531 1222
Q ss_pred HHHHHHHhCCHHHHHHHHHH
Q 035707 518 KAKLQIAQGRLKNAIETYVN 537 (713)
Q Consensus 518 la~~~~~~g~~~~A~~~~~~ 537 (713)
-..+|.+.|+|++|.+.-.+
T Consensus 797 ai~my~k~~kw~da~kla~e 816 (1636)
T KOG3616|consen 797 AIDMYGKAGKWEDAFKLAEE 816 (1636)
T ss_pred HHHHHhccccHHHHHHHHHH
Confidence 34455666666666554443
No 165
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.76 E-value=3.4e-05 Score=75.76 Aligned_cols=290 Identities=15% Similarity=0.039 Sum_probs=209.3
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCC
Q 035707 359 LVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRE 438 (713)
Q Consensus 359 ~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p 438 (713)
+.-|.+....|+-. .|.+.-+++-+.+..+.. +-.+.+-+..- .-.|+++.|.+-|+.++
T Consensus 88 LStGliAagAGda~-lARkmt~~~~~llssDqe---pLIhlLeAQaa-----------l~eG~~~~Ar~kfeAMl----- 147 (531)
T COG3898 88 LSTGLIAAGAGDAS-LARKMTARASKLLSSDQE---PLIHLLEAQAA-----------LLEGDYEDARKKFEAML----- 147 (531)
T ss_pred HhhhhhhhccCchH-HHHHHHHHHHhhhhccch---HHHHHHHHHHH-----------HhcCchHHHHHHHHHHh-----
Confidence 34455667788888 898888888763333322 23444444444 56799999999999887
Q ss_pred CCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC-Cc--
Q 035707 439 RDPYII----YHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKW-DQ-- 511 (713)
Q Consensus 439 ~~~~~~----~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~-- 511 (713)
++|+.. -.|-..-...|..+.|..+.+++-...|.-+ .++...-...+..|+++.|++.++......-.. +.
T Consensus 148 ~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~-WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~ae 226 (531)
T COG3898 148 DDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLP-WAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAE 226 (531)
T ss_pred cChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCc-hHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHH
Confidence 344432 2233334568999999999999999999988 888888888899999999999998776543110 11
Q ss_pred ---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHH
Q 035707 512 ---GELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAE 588 (713)
Q Consensus 512 ---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 588 (713)
..++...+.. ....++..|...-.+++++.|+. ...-..-+..+++.|+..++-
T Consensus 227 R~rAvLLtAkA~s-~ldadp~~Ar~~A~~a~KL~pdl----------------------vPaav~AAralf~d~~~rKg~ 283 (531)
T COG3898 227 RSRAVLLTAKAMS-LLDADPASARDDALEANKLAPDL----------------------VPAAVVAARALFRDGNLRKGS 283 (531)
T ss_pred HHHHHHHHHHHHH-HhcCChHHHHHHHHHHhhcCCcc----------------------chHHHHHHHHHHhccchhhhh
Confidence 1122222222 22345778888888888876543 666667788999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHH---HHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 035707 589 VCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFR---KALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDAL 665 (713)
Q Consensus 589 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~---~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al 665 (713)
.+++.+.+..| ++.++. ..++.+.|+ .++.-++ +...+.|++.+.....+..-...|++. .|..--+.+.
T Consensus 284 ~ilE~aWK~eP-HP~ia~--lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~--~ARa~Aeaa~ 356 (531)
T COG3898 284 KILETAWKAEP-HPDIAL--LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFS--AARAKAEAAA 356 (531)
T ss_pred hHHHHHHhcCC-ChHHHH--HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchH--HHHHHHHHHh
Confidence 99999999988 555443 233344454 4444444 444578999999999999999999997 8998888889
Q ss_pred hhCCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHc
Q 035707 666 RLDRTNTTAWYNLGLLYKTY-AGASALEAVECFEAAAL 702 (713)
Q Consensus 666 ~~~p~~~~~~~~lg~~~~~~-g~~~~~~A~~~~~~a~~ 702 (713)
+..|.. .++..|+.+-... |+ -.++..++-+++.
T Consensus 357 r~~pre-s~~lLlAdIeeAetGD--qg~vR~wlAqav~ 391 (531)
T COG3898 357 REAPRE-SAYLLLADIEEAETGD--QGKVRQWLAQAVK 391 (531)
T ss_pred hhCchh-hHHHHHHHHHhhccCc--hHHHHHHHHHHhc
Confidence 988864 5677888887776 99 9999999999987
No 166
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=2.1e-07 Score=92.24 Aligned_cols=134 Identities=19% Similarity=0.156 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---------------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 035707 568 METWHDLANVYTSLSQWRDAEVCLSKSKAINPYS---------------ASGWHSTGLLYEAKGLQQEALVSFRKALDAE 632 (713)
Q Consensus 568 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 632 (713)
+.....-|..|++.|+|..|...|++++..-+.. ..++.+++.++.++++|.+|+....++|.++
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 4455678999999999999999999988753321 2468899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcccc
Q 035707 633 PNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEA-VECFEAAALLEE 705 (713)
Q Consensus 633 p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A-~~~~~~a~~l~p 705 (713)
|+++.+++..|.++...|+++ .|+..|+++++++|+|..+...|..+-.+..+ +.+. .+.|.+++...+
T Consensus 288 ~~N~KALyRrG~A~l~~~e~~--~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~--~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 288 PNNVKALYRRGQALLALGEYD--LARDDFQKALKLEPSNKAARAELIKLKQKIRE--YEEKEKKMYANMFAKLA 357 (397)
T ss_pred CCchhHHHHHHHHHHhhccHH--HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhccc
Confidence 999999999999999999998 99999999999999999999999888877766 5554 788888887554
No 167
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=2.8e-07 Score=91.45 Aligned_cols=101 Identities=18% Similarity=0.224 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 035707 568 METWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLR 647 (713)
Q Consensus 568 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~ 647 (713)
..++.+++.++.++++|.+|+...++++..+|.|..+++..|.++...|+++.|+..|+++++++|++..+...+..+-.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HhcCCChHHHHHHHHHHHhhCC
Q 035707 648 QIGGESMATIRCFLTDALRLDR 669 (713)
Q Consensus 648 ~~g~~~l~~A~~~~~~al~~~p 669 (713)
+..++. ....+.|.+++..-+
T Consensus 337 k~~~~~-~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 337 KIREYE-EKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHH-HHHHHHHHHHhhccc
Confidence 777765 466788888876543
No 168
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=0.00017 Score=77.23 Aligned_cols=211 Identities=15% Similarity=0.126 Sum_probs=120.2
Q ss_pred CcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHH--HHhhcc--------cCCCChHHHHHHHHHHHhcC
Q 035707 300 WDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLA--LCYLGE--------ENSDCNLELLVASKICAENK 369 (713)
Q Consensus 300 ~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la--~~~~~~--------~~p~~~~~~~~~a~~~~~~g 369 (713)
.|+.++...+.-+-..|..+.|+..|+.+- .|+.+. .|+.+. ....|..+++.+|+.|.+.|
T Consensus 910 ~d~~L~~WWgqYlES~GemdaAl~~Y~~A~--------D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g 981 (1416)
T KOG3617|consen 910 RDESLYSWWGQYLESVGEMDAALSFYSSAK--------DYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDG 981 (1416)
T ss_pred cchHHHHHHHHHHhcccchHHHHHHHHHhh--------hhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhH
Confidence 478888888988899999999999888752 233332 233222 34556677777777777777
Q ss_pred CChHHHHHHHHHHHHhh-----hccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHH
Q 035707 370 VCIEEGITYARKALSML-----QGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYII 444 (713)
Q Consensus 370 ~~~~~A~~~~~~al~~~-----~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~ 444 (713)
+.. +|+.+|.++-... -.++. .--.+.-.++. ....+.-.|..+|++.- ...
T Consensus 982 ~v~-~Av~FfTrAqafsnAIRlcKEnd----~~d~L~nlal~----------s~~~d~v~aArYyEe~g--------~~~ 1038 (1416)
T KOG3617|consen 982 DVV-KAVKFFTRAQAFSNAIRLCKEND----MKDRLANLALM----------SGGSDLVSAARYYEELG--------GYA 1038 (1416)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHhh----------cCchhHHHHHHHHHHcc--------hhh
Confidence 777 7777777765410 01111 00001111110 01112223333333211 001
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH----------HhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHH------Hhhcc--
Q 035707 445 YHLCLENAEQRKLDVALYYAKKL----------LNLEARSNVKGYLLLARVLSAQKQFADAESVIND------SLDQT-- 506 (713)
Q Consensus 445 ~~la~~~~~~g~~~~A~~~~~~~----------l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~------al~~~-- 506 (713)
..-..+|.+.|.+.+|++..-+. -.++|+..+.....-+..+....+|++|...+-. ++.+.
T Consensus 1039 ~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~ 1118 (1416)
T KOG3617|consen 1039 HKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKN 1118 (1416)
T ss_pred hHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11223455666666666554321 1235554436777778888888888888766543 33321
Q ss_pred --------------CCC-------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 035707 507 --------------GKW-------DQGELLRTKAKLQIAQGRLKNAIETYVNLLAV 541 (713)
Q Consensus 507 --------------p~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 541 (713)
|.. ....++..+|.++.++|.|..|-+-|.++=..
T Consensus 1119 ~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK 1174 (1416)
T KOG3617|consen 1119 RNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK 1174 (1416)
T ss_pred CCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH
Confidence 110 12357889999999999999999999876443
No 169
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.72 E-value=6.8e-05 Score=81.38 Aligned_cols=186 Identities=14% Similarity=0.133 Sum_probs=141.4
Q ss_pred hcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcch
Q 035707 314 VSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQM 393 (713)
Q Consensus 314 ~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~ 393 (713)
..+|+..|..-.+++++ .+|+..-+..+.|-+..+.|+.+ +|..+++..-. ..+.+.
T Consensus 21 d~~qfkkal~~~~kllk-------------------k~Pn~~~a~vLkaLsl~r~gk~~-ea~~~Le~~~~-~~~~D~-- 77 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLK-------------------KHPNALYAKVLKALSLFRLGKGD-EALKLLEALYG-LKGTDD-- 77 (932)
T ss_pred hhHHHHHHHHHHHHHHH-------------------HCCCcHHHHHHHHHHHHHhcCch-hHHHHHhhhcc-CCCCch--
Confidence 45788888888888877 36888888899999999999999 99977765544 666666
Q ss_pred HHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Q 035707 394 ASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEAR 473 (713)
Q Consensus 394 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 473 (713)
..+-.+-.|| ...+++++|..+|++++ ..+|. ...++.+-.+|.+.++|.+-.+..-+..+..|.
T Consensus 78 --~tLq~l~~~y-----------~d~~~~d~~~~~Ye~~~-~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk 142 (932)
T KOG2053|consen 78 --LTLQFLQNVY-----------RDLGKLDEAVHLYERAN-QKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPK 142 (932)
T ss_pred --HHHHHHHHHH-----------HHHhhhhHHHHHHHHHH-hhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 8888899999 89999999999999999 99999 888899999999999998877777777778888
Q ss_pred CchHHHHHHHHHHHHcCCHHH---------HHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 035707 474 SNVKGYLLLARVLSAQKQFAD---------AESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVN 537 (713)
Q Consensus 474 ~~~~~~~~la~~~~~~g~~~~---------A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 537 (713)
++...|..+..++......++ |...+++.++.........=....-.++..+|++++|.+.+..
T Consensus 143 ~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~ 215 (932)
T KOG2053|consen 143 RAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAI 215 (932)
T ss_pred ccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 875566666666555544333 5556666666652112222222334566778899999998843
No 170
>PRK15331 chaperone protein SicA; Provisional
Probab=98.71 E-value=8.7e-08 Score=83.68 Aligned_cols=105 Identities=10% Similarity=-0.019 Sum_probs=82.6
Q ss_pred CccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 035707 564 RSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIA 643 (713)
Q Consensus 564 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la 643 (713)
.+...+..+..|.-+...|++++|...|+-+...+|.++..|..||.++..+++|++|+..|..+..++++++...+..|
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 34556777777877888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhhCCCC
Q 035707 644 RVLRQIGGESMATIRCFLTDALRLDRTN 671 (713)
Q Consensus 644 ~~~~~~g~~~l~~A~~~~~~al~~~p~~ 671 (713)
.++..+|+.+ .|+..|..++. .|.+
T Consensus 113 qC~l~l~~~~--~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 113 QCQLLMRKAA--KARQCFELVNE-RTED 137 (165)
T ss_pred HHHHHhCCHH--HHHHHHHHHHh-Ccch
Confidence 8888888876 88888887777 3443
No 171
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=5e-05 Score=81.15 Aligned_cols=138 Identities=14% Similarity=0.100 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHh
Q 035707 356 LELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKT 435 (713)
Q Consensus 356 ~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 435 (713)
..++..|+-+...++.. .|+++|+++-. +. . .... ....+..+++.|-+-.
T Consensus 859 ~Tyy~yA~~Lear~Di~-~AleyyEK~~~---ha-f----ev~r------------------mL~e~p~~~e~Yv~~~-- 909 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIE-AALEYYEKAGV---HA-F----EVFR------------------MLKEYPKQIEQYVRRK-- 909 (1416)
T ss_pred hhHHHHHHHHHhhccHH-HHHHHHHhcCC---hH-H----HHHH------------------HHHhChHHHHHHHHhc--
Confidence 34566666677777777 88888876532 00 0 1111 1122234444443222
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHH
Q 035707 436 MRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELL 515 (713)
Q Consensus 436 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 515 (713)
.++..|...|..+...|+.+.|+.+|..+ .-|+.+.++.+-+|+.++|-.+.++. .+..+.
T Consensus 910 ---~d~~L~~WWgqYlES~GemdaAl~~Y~~A---------~D~fs~VrI~C~qGk~~kAa~iA~es-------gd~AAc 970 (1416)
T KOG3617|consen 910 ---RDESLYSWWGQYLESVGEMDAALSFYSSA---------KDYFSMVRIKCIQGKTDKAARIAEES-------GDKAAC 970 (1416)
T ss_pred ---cchHHHHHHHHHHhcccchHHHHHHHHHh---------hhhhhheeeEeeccCchHHHHHHHhc-------ccHHHH
Confidence 35567777788888888888888888776 55667777888888888887776653 466677
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH
Q 035707 516 RTKAKLQIAQGRLKNAIETYVNLLAV 541 (713)
Q Consensus 516 ~~la~~~~~~g~~~~A~~~~~~~l~~ 541 (713)
+.+|+.|...|++.+|+..|.++...
T Consensus 971 YhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 971 YHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 88888888888888888888876543
No 172
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.68 E-value=6e-07 Score=87.68 Aligned_cols=106 Identities=15% Similarity=0.127 Sum_probs=71.2
Q ss_pred HHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHH
Q 035707 513 ELLRTKAKLQ-IAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCL 591 (713)
Q Consensus 513 ~~~~~la~~~-~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 591 (713)
...+..|..+ ...|++++|+..|+..+..+|+. +..+.+++.+|.+|...|++++|+..|
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s-------------------~~a~~A~y~LG~~y~~~g~~~~A~~~f 203 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS-------------------TYQPNANYWLGQLNYNKGKKDDAAYYF 203 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC-------------------cchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3444555443 44577777777777777776653 333567777777777777777777777
Q ss_pred HHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 035707 592 SKSKAINPYS---ASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVP 637 (713)
Q Consensus 592 ~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~ 637 (713)
++++...|++ +++++.+|.++...|++++|...|+++++..|++..
T Consensus 204 ~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 204 ASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 7777666653 566677777777777777777777777777776654
No 173
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.67 E-value=3.3e-08 Score=94.41 Aligned_cols=97 Identities=14% Similarity=0.014 Sum_probs=60.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHh
Q 035707 446 HLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQ 525 (713)
Q Consensus 446 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~ 525 (713)
..|..|+++|+|++|+++|.+.+..+|.++ ..+.+.+..|+++++|..|...++.++.++. ....+|...+..-..+
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~Np-V~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~--~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNP-VYHINRALAYLKQKSFAQAEEDCEAAIALDK--LYVKAYSRRMQARESL 178 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCCCc-cchhhHHHHHHHHHHHHHHHHhHHHHHHhhH--HHHHHHHHHHHHHHHH
Confidence 445566666666666666666666666665 5666666666666666666666666666654 3455556666666666
Q ss_pred CCHHHHHHHHHHHHHHHhhh
Q 035707 526 GRLKNAIETYVNLLAVLQFR 545 (713)
Q Consensus 526 g~~~~A~~~~~~~l~~~~~~ 545 (713)
|...+|.+-++.+|.+.|++
T Consensus 179 g~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred hhHHHHHHhHHHHHhhCccc
Confidence 66666666666666665543
No 174
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.66 E-value=3e-07 Score=89.74 Aligned_cols=105 Identities=16% Similarity=0.158 Sum_probs=79.9
Q ss_pred HHHHHHHHHHH-HHCCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHH
Q 035707 568 METWHDLANVY-TSLSQWRDAEVCLSKSKAINPYS---ASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNH---VPSLV 640 (713)
Q Consensus 568 ~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~ 640 (713)
...++..+..+ ...|+|++|+..|++.+...|++ +.+++.+|.+|...|++++|+..|++++...|++ +++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 45566666654 55678888888888888888876 4678888888888888888888888888777664 56777
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHH
Q 035707 641 SIARVLRQIGGESMATIRCFLTDALRLDRTNTTA 674 (713)
Q Consensus 641 ~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~ 674 (713)
.+|.++...|+++ +|+..|+++++..|++..+
T Consensus 222 klg~~~~~~g~~~--~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 222 KVGVIMQDKGDTA--KAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHcCCHH--HHHHHHHHHHHHCcCCHHH
Confidence 7888888888776 8888888888888876644
No 175
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.62 E-value=8.8e-07 Score=90.98 Aligned_cols=122 Identities=17% Similarity=0.156 Sum_probs=110.7
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC
Q 035707 573 DLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGE 652 (713)
Q Consensus 573 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 652 (713)
.+..++...++++.|+..+++..+.+|. +...++.++...++..+|++.+.+++...|.+...+...+..+...+++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 3455566678999999999999988764 6677899999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 035707 653 SMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAA 701 (713)
Q Consensus 653 ~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~ 701 (713)
+ .|+...++++...|++...|+.|+.+|...|+ +++|+..+..+-
T Consensus 251 ~--lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d--~e~ALlaLNs~P 295 (395)
T PF09295_consen 251 E--LALEIAKKAVELSPSEFETWYQLAECYIQLGD--FENALLALNSCP 295 (395)
T ss_pred H--HHHHHHHHHHHhCchhHHHHHHHHHHHHhcCC--HHHHHHHHhcCc
Confidence 7 99999999999999999999999999999999 999998777543
No 176
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.60 E-value=8.9e-05 Score=72.91 Aligned_cols=264 Identities=15% Similarity=0.082 Sum_probs=197.1
Q ss_pred ChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHH
Q 035707 354 CNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAE 433 (713)
Q Consensus 354 ~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 433 (713)
.+...++-++...-.|+++ .|.+-|+.++. +|+. +.+-+.|..+ ...+.|..+.|..+-+++.
T Consensus 119 epLIhlLeAQaal~eG~~~-~Ar~kfeAMl~--dPEt-----RllGLRgLyl---------eAqr~GareaAr~yAe~Aa 181 (531)
T COG3898 119 EPLIHLLEAQAALLEGDYE-DARKKFEAMLD--DPET-----RLLGLRGLYL---------EAQRLGAREAARHYAERAA 181 (531)
T ss_pred hHHHHHHHHHHHHhcCchH-HHHHHHHHHhc--ChHH-----HHHhHHHHHH---------HHHhcccHHHHHHHHHHHH
Confidence 3556677788888999999 99999999887 4542 2222222222 1157799999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh---cCCc--hHHHHHHHHHHH-HcCCHHHHHHHHHHHhhccC
Q 035707 434 KTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLE---ARSN--VKGYLLLARVLS-AQKQFADAESVINDSLDQTG 507 (713)
Q Consensus 434 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---p~~~--~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p 507 (713)
...|.-+.++...-...+..|+|+.|++..+...... ++.. ..+-..-+.... -.-+...|...-.+++++.|
T Consensus 182 -~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~p 260 (531)
T COG3898 182 -EKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAP 260 (531)
T ss_pred -hhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 9999999999998889999999999999998766532 2211 012222222222 23468889999999999998
Q ss_pred CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHH
Q 035707 508 KWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDA 587 (713)
Q Consensus 508 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 587 (713)
+....-..-+..+...|+..++-.+++.+.+..|. +.++ +..++.+.|+ .+
T Consensus 261 --dlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-----------------------P~ia--~lY~~ar~gd--ta 311 (531)
T COG3898 261 --DLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-----------------------PDIA--LLYVRARSGD--TA 311 (531)
T ss_pred --ccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-----------------------hHHH--HHHHHhcCCC--cH
Confidence 67788888899999999999999999999998763 2322 1223334454 44
Q ss_pred HHHH---HHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-cCCChHHHHHHHHH
Q 035707 588 EVCL---SKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQI-GGESMATIRCFLTD 663 (713)
Q Consensus 588 ~~~~---~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~l~~A~~~~~~ 663 (713)
+.-+ .+...+.|++.+.....+..-...|++..|..--+.+....|. ..++..++.+-... |+.. ++..++.+
T Consensus 312 ~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg--~vR~wlAq 388 (531)
T COG3898 312 LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQG--KVRQWLAQ 388 (531)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchH--HHHHHHHH
Confidence 4444 4445678999999999999999999999999999999998887 45666777776655 8887 99999999
Q ss_pred HHhh
Q 035707 664 ALRL 667 (713)
Q Consensus 664 al~~ 667 (713)
+++.
T Consensus 389 av~A 392 (531)
T COG3898 389 AVKA 392 (531)
T ss_pred HhcC
Confidence 9874
No 177
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.59 E-value=4e-06 Score=75.50 Aligned_cols=220 Identities=12% Similarity=0.036 Sum_probs=150.5
Q ss_pred ChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHH
Q 035707 354 CNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAE 433 (713)
Q Consensus 354 ~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 433 (713)
....++..|..|-..|-+. -|.--|.+++. +.|.-+ .+++.||..+ ...|+++.|.+.|...+
T Consensus 64 RA~l~fERGvlYDSlGL~~-LAR~DftQaLa-i~P~m~----~vfNyLG~Yl-----------~~a~~fdaa~eaFds~~ 126 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRA-LARNDFSQALA-IRPDMP----EVFNYLGIYL-----------TQAGNFDAAYEAFDSVL 126 (297)
T ss_pred HHHHHHHhcchhhhhhHHH-HHhhhhhhhhh-cCCCcH----HHHHHHHHHH-----------HhcccchHHHHHhhhHh
Confidence 3455666777777778888 88899999999 899988 9999999999 88999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHH-HHHhhccCCCCcH
Q 035707 434 KTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVI-NDSLDQTGKWDQG 512 (713)
Q Consensus 434 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~-~~al~~~p~~~~~ 512 (713)
+++|.+.-+..+.|..++--|++.-|.+.+.+..+.+|.+|..++ ++- +-...-++.+|..-+ +++...+. ..
T Consensus 127 -ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~L-WLY-l~E~k~dP~~A~tnL~qR~~~~d~---e~ 200 (297)
T COG4785 127 -ELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSL-WLY-LNEQKLDPKQAKTNLKQRAEKSDK---EQ 200 (297)
T ss_pred -ccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHH-HHH-HHHhhCCHHHHHHHHHHHHHhccH---hh
Confidence 999999999999999999999999999999999999999883322 111 122334666676544 44444431 12
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 035707 513 ELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLS 592 (713)
Q Consensus 513 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 592 (713)
..|. +...| .|+..+ ...++++.+...++.. -...-.++++.+|..+...|+.++|...|+
T Consensus 201 WG~~-iV~~y--LgkiS~-e~l~~~~~a~a~~n~~---------------~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfK 261 (297)
T COG4785 201 WGWN-IVEFY--LGKISE-ETLMERLKADATDNTS---------------LAEHLTETYFYLGKYYLSLGDLDEATALFK 261 (297)
T ss_pred hhHH-HHHHH--HhhccH-HHHHHHHHhhccchHH---------------HHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 2222 22222 222211 1223333332211100 001226789999999999999999999999
Q ss_pred HHHhcCCCC----hhHHHHHHHHHHHc
Q 035707 593 KSKAINPYS----ASGWHSTGLLYEAK 615 (713)
Q Consensus 593 ~al~~~p~~----~~~~~~lg~~~~~~ 615 (713)
-++..+-.+ .-+...++.+...+
T Consensus 262 LaiannVynfVE~RyA~~EL~~l~q~~ 288 (297)
T COG4785 262 LAVANNVYNFVEHRYALLELSLLGQDQ 288 (297)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhcccc
Confidence 988765433 22344445444433
No 178
>PRK15331 chaperone protein SicA; Provisional
Probab=98.59 E-value=1.2e-06 Score=76.64 Aligned_cols=104 Identities=17% Similarity=0.005 Sum_probs=90.6
Q ss_pred CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHH
Q 035707 510 DQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEV 589 (713)
Q Consensus 510 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 589 (713)
+.....+..|.-+...|++++|...|+-+...+|.+ ++.|..||.++...++|++|+.
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n----------------------~~Y~~GLaa~~Q~~k~y~~Ai~ 92 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN----------------------PDYTMGLAAVCQLKKQFQKACD 92 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc----------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888999999999999999888876544 7889999999999999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 035707 590 CLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHV 636 (713)
Q Consensus 590 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 636 (713)
+|..+..++++++...+..|.++...|+.+.|+.+|+.++. .|.+.
T Consensus 93 ~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 93 LYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred HHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence 99999999999999999999999999999999999999888 45543
No 179
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.57 E-value=0.00018 Score=72.69 Aligned_cols=122 Identities=16% Similarity=0.113 Sum_probs=94.8
Q ss_pred CChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcc---Ccch-HHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHH
Q 035707 353 DCNLELLVASKICAENKVCIEEGITYARKALSMLQGK---CRQM-ASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVA 428 (713)
Q Consensus 353 ~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~---~~~~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~ 428 (713)
+.+.++++.+..++..|++. .|.+.+-..--...+. .++. ....+..||.++ .+.+.|.-+..+
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~-kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh-----------~~~~~y~~~~~~ 305 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHP-KAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIH-----------YQLGCYQASSVL 305 (696)
T ss_pred CCcHHHHHHHHHHHHhcchH-HHHHHHHhcccccccCccccchhhhheeecCcceEe-----------eehhhHHHHHHH
Confidence 56788899999999999999 8888765432112222 1111 234568899999 778888888888
Q ss_pred HHHHHHhh---------C---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHH
Q 035707 429 LETAEKTM---------R---------ERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSA 488 (713)
Q Consensus 429 ~~~al~~~---------~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~ 488 (713)
|.+|+ +. . .....++|+.|..|...|++-.|.++|.+++...-.+| ..|.+++.++..
T Consensus 306 F~kAL-~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nP-rlWLRlAEcCim 381 (696)
T KOG2471|consen 306 FLKAL-RNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNP-RLWLRLAECCIM 381 (696)
T ss_pred HHHHH-HHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHH
Confidence 88888 51 1 12356889999999999999999999999999999999 999999998764
No 180
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.55 E-value=0.0014 Score=66.07 Aligned_cols=145 Identities=14% Similarity=0.137 Sum_probs=80.2
Q ss_pred HHhhhhhhccCchHHHHHHHHHHHHHHHHhcCCCCCCCCCcc----cchHHHHHHHHH---------------------H
Q 035707 155 FLKTKSLQGLGRFEEACQSCKVILDTVEHALPEGLPGNHSID----CKLQETLNKAVE---------------------L 209 (713)
Q Consensus 155 ~~~~~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~a~~---------------------~ 209 (713)
--+|.++++++++.+|.+.|.+|-+.+++.. ..+.+. .=++..+.+.+. .
T Consensus 10 c~Qgf~Lqkq~~~~esEkifskI~~e~~~~~-----f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF 84 (549)
T PF07079_consen 10 CFQGFILQKQKKFQESEKIFSKIYDEKESSP-----FLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLF 84 (549)
T ss_pred HHhhHHHHHHhhhhHHHHHHHHHHHHhhcch-----HHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3579999999999999999999887664421 000000 001111111111 1
Q ss_pred hHHHHHhcCChhHHHHHHHHHhcccCCCChh-HHHHHHHHHHHHHhhcCCCCCCCcccccccccccCCchhHHHHHHHHH
Q 035707 210 LPELYKLAGDPDETILSYRRALLYYWNLDIE-TTARIEKKFAVFLLYSGTDASPPNLRLQMELSFVPRNNIEEAVLLLLI 288 (713)
Q Consensus 210 l~~~~~~~g~~~eA~~~~~~al~~~~~~~~~-~~~~i~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~eeA~~ll~~ 288 (713)
.+....++|.+++|+..+..--..-....+. -..+++.-+..+.+.. ....+.+..|.+.|+..++..
T Consensus 85 ~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~-----------i~a~sLIe~g~f~EgR~iLn~ 153 (549)
T PF07079_consen 85 KALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDE-----------IEAHSLIETGRFSEGRAILNR 153 (549)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHH-----------HHHHHHHhcCCcchHHHHHHH
Confidence 1224567777777777765553321000011 1122333333332211 122345667778888888777
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHhc
Q 035707 289 LLKKIVLGKIEWDPSIIDHLSFALSVS 315 (713)
Q Consensus 289 ~~~~~~l~~~~~~~~~~~~l~~a~~~~ 315 (713)
......-....|+..+++.+...|+++
T Consensus 154 i~~~llkrE~~w~~d~yd~~vlmlsrS 180 (549)
T PF07079_consen 154 IIERLLKRECEWNSDMYDRAVLMLSRS 180 (549)
T ss_pred HHHHHhhhhhcccHHHHHHHHHHHhHH
Confidence 666666666778999999887777665
No 181
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.55 E-value=1.3e-06 Score=73.63 Aligned_cols=98 Identities=23% Similarity=0.122 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 035707 514 LLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSK 593 (713)
Q Consensus 514 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 593 (713)
+++.+|.++-..|+.++|+..|++++..... .+....++..+|..+...|++++|+..+++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~-------------------~~~~~~a~i~lastlr~LG~~deA~~~L~~ 63 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLS-------------------GADRRRALIQLASTLRNLGRYDEALALLEE 63 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------------------chHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4566666777777777777777777664221 123355666777777777777777777777
Q ss_pred HHhcCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 035707 594 SKAINPY---SASGWHSTGLLYEAKGLQQEALVSFRKALD 630 (713)
Q Consensus 594 al~~~p~---~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 630 (713)
.+...|+ +..+...++.++...|++++|+..+-.++.
T Consensus 64 ~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 64 ALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7766666 555666666677777777777776665553
No 182
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.55 E-value=2.1e-05 Score=74.01 Aligned_cols=173 Identities=17% Similarity=0.154 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHH
Q 035707 512 GELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCL 591 (713)
Q Consensus 512 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 591 (713)
+..++..|......|++++|+..|+.+....|.. |....+...++.++.+.+++++|+...
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s-------------------~~~~qa~l~l~yA~Yk~~~y~~A~~~~ 94 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFS-------------------PYSEQAQLDLAYAYYKNGEYDLALAYI 94 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-------------------cccHHHHHHHHHHHHhcccHHHHHHHH
Confidence 3445555555556666666666666655554432 333555555666666666666666666
Q ss_pred HHHHhcCCCChh---HHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCCCCHH-----------------HHHHHH
Q 035707 592 SKSKAINPYSAS---GWHSTGLLYEAK--------GLQQEALVSFRKALDAEPNHVP-----------------SLVSIA 643 (713)
Q Consensus 592 ~~al~~~p~~~~---~~~~lg~~~~~~--------g~~~eA~~~~~~al~~~p~~~~-----------------~~~~la 643 (713)
++-+.+.|.++. +++..|.++... .-..+|+..|+..+...|++.- --..+|
T Consensus 95 drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~Ia 174 (254)
T COG4105 95 DRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIA 174 (254)
T ss_pred HHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 666666555433 344444444321 1123455555556665555421 012345
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCC
Q 035707 644 RVLRQIGGESMATIRCFLTDALRLDRTN---TTAWYNLGLLYKTYAGASALEAVECFEAAALLEESA 707 (713)
Q Consensus 644 ~~~~~~g~~~l~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~ 707 (713)
..|.+.|.+- .|+..++.+++..|+. .+++..+..+|..+|- .++|...-.-.-.-.|++
T Consensus 175 ryY~kr~~~~--AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl--~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 175 RYYLKRGAYV--AAINRFEEVLENYPDTSAVREALARLEEAYYALGL--TDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHhcChH--HHHHHHHHHHhccccccchHHHHHHHHHHHHHhCC--hHHHHHHHHHHHhcCCCC
Confidence 5666666664 6666667776665543 2456666677777777 666655443333334444
No 183
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.54 E-value=1.8e-06 Score=88.71 Aligned_cols=125 Identities=15% Similarity=0.112 Sum_probs=107.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhc
Q 035707 480 LLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNR 559 (713)
Q Consensus 480 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 559 (713)
..+..++...++++.|+.++++..+.+| + +...+++++...++..+|++.+.+++...|.+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~p--e---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d-------------- 233 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDP--E---VAVLLARVYLLMNEEVEAIRLLNEALKENPQD-------------- 233 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCC--c---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC--------------
Confidence 3445666778899999999999988876 3 45568999999999999999999999876543
Q ss_pred ccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 035707 560 QNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDA 631 (713)
Q Consensus 560 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 631 (713)
...+...+..+...++++.|+.+.++++...|.+...|+.|+.+|...|++++|+..++.+--.
T Consensus 234 --------~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 234 --------SELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred --------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 8889999999999999999999999999999999999999999999999999999887755433
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.53 E-value=1.7e-06 Score=72.97 Aligned_cols=96 Identities=21% Similarity=0.162 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHH
Q 035707 569 ETWHDLANVYTSLSQWRDAEVCLSKSKAINPYS---ASGWHSTGLLYEAKGLQQEALVSFRKALDAEPN---HVPSLVSI 642 (713)
Q Consensus 569 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~---~~~~~~~l 642 (713)
.+++.+|.++-..|+.++|+.+|++++...... ..++..+|..+...|++++|+..+++++...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 467888888888888888998888888865443 457888888888888888888888888888777 67777788
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHh
Q 035707 643 ARVLRQIGGESMATIRCFLTDALR 666 (713)
Q Consensus 643 a~~~~~~g~~~l~~A~~~~~~al~ 666 (713)
+.++...|+.+ +|+..+-.++.
T Consensus 82 Al~L~~~gr~~--eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPK--EALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHH--HHHHHHHHHHH
Confidence 88888888887 88888776664
No 185
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.50 E-value=6.6e-07 Score=69.26 Aligned_cols=69 Identities=19% Similarity=0.294 Sum_probs=54.2
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 035707 575 ANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIA 643 (713)
Q Consensus 575 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la 643 (713)
..+|...++|++|+.++++++..+|.++..|..+|.++...|++++|+..|+++++..|+++.+....+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 456778888888888888888888888888888888888888888888888888888887776554443
No 186
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.49 E-value=3.8e-07 Score=69.43 Aligned_cols=65 Identities=18% Similarity=0.173 Sum_probs=39.1
Q ss_pred HHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 035707 579 TSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIA 643 (713)
Q Consensus 579 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la 643 (713)
...|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++..+..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 34566666666666666666666666666666666666666666666666666666555444443
No 187
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.46 E-value=1.3e-07 Score=90.52 Aligned_cols=233 Identities=11% Similarity=0.003 Sum_probs=158.3
Q ss_pred HHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHH
Q 035707 417 KRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAE 496 (713)
Q Consensus 417 ~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~ 496 (713)
..+|.|++|+.+|.+++ ..+|.|+..+.+.+.+|++...|..|......++.++.... .+|...+..-..+|+..+|.
T Consensus 108 FKQgKy~EAIDCYs~~i-a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~-KAYSRR~~AR~~Lg~~~EAK 185 (536)
T KOG4648|consen 108 FKQGKYEEAIDCYSTAI-AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYV-KAYSRRMQARESLGNNMEAK 185 (536)
T ss_pred hhccchhHHHHHhhhhh-ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHH-HHHHHHHHHHHHHhhHHHHH
Confidence 78888999999999999 99999999999999999999999999999999999998877 99999999999999999999
Q ss_pred HHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHH
Q 035707 497 SVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLAN 576 (713)
Q Consensus 497 ~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 576 (713)
+.++.++.+.| .+.++...++.+- .+.++.- +....|....+.. .....-..-.-|.
T Consensus 186 kD~E~vL~LEP--~~~ELkK~~a~i~----Sl~E~~I----~~KsT~G~~~A~Q-------------~~~Q~l~~K~~G~ 242 (536)
T KOG4648|consen 186 KDCETVLALEP--KNIELKKSLARIN----SLRERKI----ATKSTPGFTPARQ-------------GMIQILPIKKPGY 242 (536)
T ss_pred HhHHHHHhhCc--ccHHHHHHHHHhc----chHhhhH----HhhcCCCCCcccc-------------chhhhccccCcch
Confidence 99999999999 5555444433332 2222110 1111111000000 0000001123456
Q ss_pred HHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHH
Q 035707 577 VYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMAT 656 (713)
Q Consensus 577 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~ 656 (713)
.+...|.++.++.++-+-+.....+...-.+ +..+.+..++++++....+++..+|.........+.+-.-.|... +
T Consensus 243 ~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~--E 319 (536)
T KOG4648|consen 243 KFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSK--E 319 (536)
T ss_pred hhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhh--h
Confidence 6677788888888887766655444333333 555666677888888888887777765554444444433444444 6
Q ss_pred HHHHHHHHHhhCCCCHHHHHH
Q 035707 657 IRCFLTDALRLDRTNTTAWYN 677 (713)
Q Consensus 657 A~~~~~~al~~~p~~~~~~~~ 677 (713)
+...++.++.+.|.+-.+-..
T Consensus 320 ~K~~~~T~~~~~P~~~~~~~~ 340 (536)
T KOG4648|consen 320 VKPTKQTAVKVAPAVETPKET 340 (536)
T ss_pred cCcchhheeeeccccccchhh
Confidence 666777777777765444333
No 188
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.45 E-value=3e-05 Score=68.28 Aligned_cols=130 Identities=18% Similarity=0.117 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh-hhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHH
Q 035707 442 YIIYHLCLENAEQRKLDVALYYAKKLLN-LEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAK 520 (713)
Q Consensus 442 ~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~ 520 (713)
.-.+.+|....+.|++.+|...|++++. +..+++ ..+..+++..+..+++..|...+++..+.+|....+.....+++
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~-a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR 168 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDA-AMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFAR 168 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCH-HHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHH
Confidence 4578899999999999999999999886 345555 78888999999999999999999999999887677778888999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 035707 521 LQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSK 595 (713)
Q Consensus 521 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 595 (713)
.+..+|++.+|...|+.++...|. +......+..+.++|+.++|..-+....
T Consensus 169 ~laa~g~~a~Aesafe~a~~~ypg-----------------------~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 169 TLAAQGKYADAESAFEVAISYYPG-----------------------PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHhcCCchhHHHHHHHHHHhCCC-----------------------HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 999999999999999999998764 6677778888899998888776665544
No 189
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.44 E-value=4.5e-05 Score=71.76 Aligned_cols=174 Identities=15% Similarity=0.091 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCc--hHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHH
Q 035707 441 PYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSN--VKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTK 518 (713)
Q Consensus 441 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 518 (713)
+..|+.-|....+.|++++|+..|+.+....|..+ ..+...++.++.+.+++++|+..+++-+...|
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP----------- 102 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYP----------- 102 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-----------
Confidence 44566666666666666666666666665555443 13444555555555555555555555555554
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHC--------CCHHHHHHH
Q 035707 519 AKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSL--------SQWRDAEVC 590 (713)
Q Consensus 519 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~ 590 (713)
.+ |.-..+++..|.+++.. .-..+|...
T Consensus 103 -------------------------~~-------------------~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~ 138 (254)
T COG4105 103 -------------------------TH-------------------PNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAA 138 (254)
T ss_pred -------------------------CC-------------------CChhHHHHHHHHHHhccCCccccCHHHHHHHHHH
Confidence 32 22233333333333321 123467778
Q ss_pred HHHHHhcCCCChhH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhc
Q 035707 591 LSKSKAINPYSASG-----------------WHSTGLLYEAKGLQQEALVSFRKALDAEPNH---VPSLVSIARVLRQIG 650 (713)
Q Consensus 591 ~~~al~~~p~~~~~-----------------~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g 650 (713)
|++.+...|++.-+ =..+|..|.+.|.+..|+.-++.+++..|+. .+++..+..+|..+|
T Consensus 139 f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lg 218 (254)
T COG4105 139 FKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALG 218 (254)
T ss_pred HHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhC
Confidence 88888888876321 2456888999999999999999999987764 467888899999999
Q ss_pred CCChHHHHHHHHHHHhhC-CCCH
Q 035707 651 GESMATIRCFLTDALRLD-RTNT 672 (713)
Q Consensus 651 ~~~l~~A~~~~~~al~~~-p~~~ 672 (713)
-.+ +|... .+.+..+ |+++
T Consensus 219 l~~--~a~~~-~~vl~~N~p~s~ 238 (254)
T COG4105 219 LTD--EAKKT-AKVLGANYPDSQ 238 (254)
T ss_pred ChH--HHHHH-HHHHHhcCCCCc
Confidence 987 77766 4556554 4443
No 190
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.44 E-value=4.6e-05 Score=67.13 Aligned_cols=128 Identities=15% Similarity=0.067 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHH
Q 035707 568 METWHDLANVYTSLSQWRDAEVCLSKSKA-INPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPN--HVPSLVSIAR 644 (713)
Q Consensus 568 ~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~~la~ 644 (713)
..-.+.||......|++.+|...|++++. +..+++..+..++...+..+++..|...+++..+.+|. .++....+|.
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR 168 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFAR 168 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHH
Confidence 44556677777777777777777777764 45566677777777777777777777777777776664 4556667777
Q ss_pred HHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 035707 645 VLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAA 700 (713)
Q Consensus 645 ~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a 700 (713)
++...|++. +|...|+.++...|+ +.+....+..+.++|+ .++|..-+...
T Consensus 169 ~laa~g~~a--~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr--~~ea~aq~~~v 219 (251)
T COG4700 169 TLAAQGKYA--DAESAFEVAISYYPG-PQARIYYAEMLAKQGR--LREANAQYVAV 219 (251)
T ss_pred HHHhcCCch--hHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcc--hhHHHHHHHHH
Confidence 777777775 677777777777664 4556666777777776 66665555443
No 191
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=1.3e-05 Score=80.74 Aligned_cols=145 Identities=16% Similarity=0.109 Sum_probs=100.9
Q ss_pred ccCCCCChHHHhhhhhhhc--cCCHHHHHHHhhhHhhhcCCHHHHHhhhhcCCccccchhhhhhhhhhccccccCCCCCC
Q 035707 61 AKVDNSNIEEAESSLRESG--YLNYEEARALLGRLEFQKGNIEAALHVFEGIDVAAVTSRMKVSLSRRCDQNRRRSQSDA 138 (713)
Q Consensus 61 ~~~~~~~~~~A~~~l~~~l--~~~~~~a~~llg~~~~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (713)
.++...+++.+....+-+. .-|.+++.+|..+.+|.+|||..|.+.+..++++--..-++.
T Consensus 215 ~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T----------------- 277 (696)
T KOG2471|consen 215 FLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTIT----------------- 277 (696)
T ss_pred HHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCcccc-----------------
Confidence 3455555566655555554 234889999999999999999999999987755322111000
Q ss_pred CCCcchhHHHHHHHH--HHHhhhhhhccCchHHHHHHHHHHHHHHHHhcCCCCCCCCCcccch-HHHHHHHHHHhHHHHH
Q 035707 139 APPMSMHAVSLLVEA--IFLKTKSLQGLGRFEEACQSCKVILDTVEHALPEGLPGNHSIDCKL-QETLNKAVELLPELYK 215 (713)
Q Consensus 139 ~~~~~~~~~~~~~e~--~~~~~~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~l~~~~~ 215 (713)
. -+... +...|-+++++|.|.-+...|.+++.-+.+.+..|...... |.+ +.....-++..|..|.
T Consensus 278 -----~----q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~--~tls~nks~eilYNcG~~~L 346 (696)
T KOG2471|consen 278 -----P----QLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT--FTLSQNKSMEILYNCGLLYL 346 (696)
T ss_pred -----c----hhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc--eehhcccchhhHHhhhHHHH
Confidence 0 00122 24679999999999999999999997666677777433211 111 1223456778899999
Q ss_pred hcCChhHHHHHHHHHhcc
Q 035707 216 LAGDPDETILSYRRALLY 233 (713)
Q Consensus 216 ~~g~~~eA~~~~~~al~~ 233 (713)
..|++-.|.++|.+++..
T Consensus 347 h~grPl~AfqCf~~av~v 364 (696)
T KOG2471|consen 347 HSGRPLLAFQCFQKAVHV 364 (696)
T ss_pred hcCCcHHHHHHHHHHHHH
Confidence 999999999999999875
No 192
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.43 E-value=4.5e-06 Score=79.20 Aligned_cols=108 Identities=13% Similarity=0.143 Sum_probs=89.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 035707 515 LRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKS 594 (713)
Q Consensus 515 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 594 (713)
.+..|.-+...|+|.+|...|...++..|+. +..+.+++.||.+++.+|++++|...|..+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s-------------------~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~ 204 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNS-------------------TYTPNAYYWLGESLYAQGDYEDAAYIFARV 204 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------------------cccchhHHHHHHHHHhcccchHHHHHHHHH
Confidence 6677777788888888888888888888765 455788888999999999999999988888
Q ss_pred HhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 035707 595 KAINPYS---ASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVS 641 (713)
Q Consensus 595 l~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 641 (713)
.+..|++ +++++.+|.+....|+.++|...|+++++..|+...+...
T Consensus 205 ~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 205 VKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 8877665 5778888888888899999999998888888887765543
No 193
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.43 E-value=8.6e-07 Score=67.47 Aligned_cols=65 Identities=22% Similarity=0.137 Sum_probs=43.2
Q ss_pred HHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHH
Q 035707 418 RILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLAR 484 (713)
Q Consensus 418 ~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~ 484 (713)
..|++++|+..|++++ ..+|++..+++.+|.+|...|++++|...+++++..+|+++ ..+..++.
T Consensus 3 ~~~~~~~A~~~~~~~l-~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~-~~~~l~a~ 67 (68)
T PF14559_consen 3 KQGDYDEAIELLEKAL-QRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP-EYQQLLAQ 67 (68)
T ss_dssp HTTHHHHHHHHHHHHH-HHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH-HHHHHHHH
T ss_pred hccCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH-HHHHHHhc
Confidence 4566677777777777 77777777777777777777777777777777777666655 55555543
No 194
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=0.00015 Score=67.49 Aligned_cols=209 Identities=11% Similarity=0.052 Sum_probs=127.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC------------------chHHHHHHHHHHHHcCCHHHHHHHHHH
Q 035707 440 DPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARS------------------NVKGYLLLARVLSAQKQFADAESVIND 501 (713)
Q Consensus 440 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------------------~~~~~~~la~~~~~~g~~~~A~~~~~~ 501 (713)
....|...-.++.+.+.+++|..-+...-+.+..+ |.......|.+....|+..+.+.-+..
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~ 147 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 147 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 34566666667777777777777666654443211 101223345666667777666554443
Q ss_pred Hhhcc------------CCC-------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccC
Q 035707 502 SLDQT------------GKW-------DQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNH 562 (713)
Q Consensus 502 al~~~------------p~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 562 (713)
....- |.. .-..+.+.++.++.-.|.|.-.+..+.++++.+|
T Consensus 148 L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~------------------- 208 (366)
T KOG2796|consen 148 LKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYP------------------- 208 (366)
T ss_pred HHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCC-------------------
Confidence 32210 100 0112345566666666777777777777776553
Q ss_pred CCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 035707 563 DRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAIN------PYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHV 636 (713)
Q Consensus 563 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 636 (713)
+.++.....+|.+.++.|+.+.|..+|+++-+.. .....+..+.+.++.-.+++.+|...|.+++..+|.++
T Consensus 209 --e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~ 286 (366)
T KOG2796|consen 209 --EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNA 286 (366)
T ss_pred --cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCch
Confidence 3446666777777777777777777777544322 12234555666667777777777777777777777777
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC
Q 035707 637 PSLVSIARVLRQIGGESMATIRCFLTDALRLDRTN 671 (713)
Q Consensus 637 ~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~ 671 (713)
.+.++.|.++...|+.. .|++.++.++...|..
T Consensus 287 ~a~NnKALcllYlg~l~--DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 287 VANNNKALCLLYLGKLK--DALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhchHHHHHHHHHHHH--HHHHHHHHHhccCCcc
Confidence 77777777777777765 7777777777777753
No 195
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.38 E-value=8e-06 Score=77.54 Aligned_cols=105 Identities=15% Similarity=0.144 Sum_probs=93.1
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHH
Q 035707 571 WHDLANVYTSLSQWRDAEVCLSKSKAINPYS---ASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNH---VPSLVSIAR 644 (713)
Q Consensus 571 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~ 644 (713)
.++.|.-++..|+|.+|...|..-++..|++ +.+++.||.+++.+|++++|...|..+.+-.|++ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7788888889999999999999999998875 6789999999999999999999999999887765 588999999
Q ss_pred HHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHH
Q 035707 645 VLRQIGGESMATIRCFLTDALRLDRTNTTAWYN 677 (713)
Q Consensus 645 ~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~ 677 (713)
+..++|+.+ +|...|+++++..|+.+.+...
T Consensus 224 ~~~~l~~~d--~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 224 SLGRLGNTD--EACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHhcCHH--HHHHHHHHHHHHCCCCHHHHHH
Confidence 999999997 9999999999999998766543
No 196
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.38 E-value=0.00042 Score=75.51 Aligned_cols=279 Identities=13% Similarity=0.026 Sum_probs=179.5
Q ss_pred HHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHH
Q 035707 417 KRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAE 496 (713)
Q Consensus 417 ~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~ 496 (713)
...+++.+|+....+.+ +..|+...+...-|..+.++|+.++|..+++..-...+++. .++..+-.+|..++++++|.
T Consensus 20 ld~~qfkkal~~~~kll-kk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~-~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLL-KKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDD-LTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhhHHHHHHHHHHHHHH-HHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCch-HHHHHHHHHHHHHhhhhHHH
Confidence 45688899999999999 99999999999999999999999999988887777777766 88999999999999999999
Q ss_pred HHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh-------------------
Q 035707 497 SVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVK------------------- 557 (713)
Q Consensus 497 ~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~------------------- 557 (713)
..|+++...+| . ...+..+-.+|.+.+.|.+-.+.--++.+..|+.+-.+-+..++..
T Consensus 98 ~~Ye~~~~~~P--~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 98 HLYERANQKYP--S-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHhhCC--c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 99999999999 4 6666677777777777766555544444455554432221111110
Q ss_pred ---hcccCC--CccHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 035707 558 ---NRQNHD--RSLEMETWHDLANVYTSLSQWRDAEVCLSKSK--AINPYSASGWHSTGLLYEAKGLQQEALVSFRKALD 630 (713)
Q Consensus 558 ---~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 630 (713)
+..... ......-....-.++..+|++++|.+.+..-+ ...+.+...-......+...++|.+-.+...+++.
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 001111 11111111222345567889999999884332 23344455555667788889999999999999999
Q ss_pred cCCCCHHHHHH-HHHHHHHhcCCC----------hHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 035707 631 AEPNHVPSLVS-IARVLRQIGGES----------MATIRCFLTDALRLDRTN-TTAWYNLGLLYKTYAGASALEAVECFE 698 (713)
Q Consensus 631 ~~p~~~~~~~~-la~~~~~~g~~~----------l~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~~~A~~~~~ 698 (713)
..+++-..+.. .-.++....... +..-.+..++.+.....+ .-++..+-.-+...|+ .+++.-.|-
T Consensus 255 k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd--~ee~~~~y~ 332 (932)
T KOG2053|consen 255 KGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGD--SEEMLSYYF 332 (932)
T ss_pred hCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCC--hHHHHHHHH
Confidence 98887211111 111111111100 112333333333332222 2345555555567788 888877665
Q ss_pred HHHc
Q 035707 699 AAAL 702 (713)
Q Consensus 699 ~a~~ 702 (713)
+-+-
T Consensus 333 ~kfg 336 (932)
T KOG2053|consen 333 KKFG 336 (932)
T ss_pred HHhC
Confidence 4443
No 197
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.38 E-value=9.4e-06 Score=69.54 Aligned_cols=87 Identities=18% Similarity=0.240 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHH
Q 035707 512 GELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCL 591 (713)
Q Consensus 512 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 591 (713)
...++..|.-.+..|+|++|++.|+.+....|.. +....+...++.+|+..+++++|+..+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g-------------------~ya~qAqL~l~yayy~~~~y~~A~a~~ 70 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFG-------------------EYAEQAQLDLAYAYYKQGDYEEAIAAY 70 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-------------------cccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 4456666666667777777777777766665533 333566666777777777777777777
Q ss_pred HHHHhcCCCCh---hHHHHHHHHHHHcCC
Q 035707 592 SKSKAINPYSA---SGWHSTGLLYEAKGL 617 (713)
Q Consensus 592 ~~al~~~p~~~---~~~~~lg~~~~~~g~ 617 (713)
++-++++|.++ .+++..|.++..+..
T Consensus 71 ~rFirLhP~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 71 DRFIRLHPTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred HHHHHhCCCCCCccHHHHHHHHHHHHHhh
Confidence 77777766654 355666666655543
No 198
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.37 E-value=4.5e-06 Score=74.15 Aligned_cols=114 Identities=21% Similarity=0.280 Sum_probs=92.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 035707 515 LRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKS 594 (713)
Q Consensus 515 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 594 (713)
+..-|.-++..|+|++|...|..+|...|.... ......+.+.|.++.+++.|+.|+....++
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~-----------------e~rsIly~Nraaa~iKl~k~e~aI~dcsKa 160 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTST-----------------EERSILYSNRAAALIKLRKWESAIEDCSKA 160 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccH-----------------HHHHHHHhhhHHHHHHhhhHHHHHHHHHhh
Confidence 334466677888889999999998888775311 223667888899999999999999999999
Q ss_pred HhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 035707 595 KAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARV 645 (713)
Q Consensus 595 l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~ 645 (713)
++++|....++...+.+|.++..+++|+..|.+.+..+|....+.-.++.+
T Consensus 161 iel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 161 IELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 999999999999999999999999999999999999999876655544433
No 199
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.33 E-value=2.2e-06 Score=66.27 Aligned_cols=68 Identities=25% Similarity=0.221 Sum_probs=46.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 035707 609 GLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNL 678 (713)
Q Consensus 609 g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~l 678 (713)
..+|...+++++|++++++++.++|+++..+...|.++...|+++ +|+..|+++++..|+++.+....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~--~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYE--EALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHH--HHHHHHHHHHHHCCCcHHHHHHH
Confidence 345666677777777777777777777777777777777777765 77777777777777666554433
No 200
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.30 E-value=9.7e-06 Score=72.07 Aligned_cols=112 Identities=12% Similarity=0.059 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh-----hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 035707 568 METWHDLANVYTSLSQWRDAEVCLSKSKAINPYSA-----SGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSI 642 (713)
Q Consensus 568 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 642 (713)
+.-+-.-|.-++..|+|++|..-|..++.+.|..+ ..|.+.|.+..+++.++.|+..+.++++++|.+..++...
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR 174 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR 174 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence 44455567888999999999999999999998753 4677889999999999999999999999999999999999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 035707 643 ARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLL 681 (713)
Q Consensus 643 a~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~ 681 (713)
+.+|.++..++ +|+.-|.+.++.+|....+.-....+
T Consensus 175 Aeayek~ek~e--ealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 175 AEAYEKMEKYE--EALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHHHHhhhhHH--HHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 99999999997 99999999999999987766555544
No 201
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.29 E-value=1.8e-05 Score=67.84 Aligned_cols=92 Identities=10% Similarity=-0.027 Sum_probs=58.3
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhh
Q 035707 473 RSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKW-DQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSA 551 (713)
Q Consensus 473 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 551 (713)
+.+...++.-|.-....|+|.+|++.|+.+....|.. ....+...++.+|...+++++|+..+++.++++|.+
T Consensus 7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~h------ 80 (142)
T PF13512_consen 7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTH------ 80 (142)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------
Confidence 3333556666666666666666666666666665422 123466677777777777777777777777777665
Q ss_pred hhhhhhhcccCCCccHHHHHHHHHHHHHHCCC
Q 035707 552 GKNLVKNRQNHDRSLEMETWHDLANVYTSLSQ 583 (713)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 583 (713)
|.-..+++..|.++..+..
T Consensus 81 -------------p~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 81 -------------PNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred -------------CCccHHHHHHHHHHHHHhh
Confidence 4446666777766665543
No 202
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.27 E-value=0.00055 Score=72.47 Aligned_cols=224 Identities=15% Similarity=0.143 Sum_probs=123.7
Q ss_pred HHHhcHHHHHHHHHH------HHHhhC----CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHH
Q 035707 417 KRILKQSQALVALET------AEKTMR----ERDPY-IIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARV 485 (713)
Q Consensus 417 ~~~~~~~~A~~~~~~------al~~~~----p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~ 485 (713)
++..++++|+++|++ ++ ++. |.... .--..|.-+...|+++.|+.+|-++-. ...-...
T Consensus 672 eki~d~dkale~fkkgdaf~kai-elarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaiea 741 (1636)
T KOG3616|consen 672 EKIHDFDKALECFKKGDAFGKAI-ELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEA 741 (1636)
T ss_pred HHhhCHHHHHHHHHcccHHHHHH-HHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHH
Confidence 667777777777753 22 221 22211 123356666777888888877765421 1122233
Q ss_pred HHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCc
Q 035707 486 LSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRS 565 (713)
Q Consensus 486 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (713)
....+++.+|+.+++...+... ....+-.++.-|...|+++-|.+.|.++
T Consensus 742 ai~akew~kai~ildniqdqk~---~s~yy~~iadhyan~~dfe~ae~lf~e~--------------------------- 791 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKT---ASGYYGEIADHYANKGDFEIAEELFTEA--------------------------- 791 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhcc---ccccchHHHHHhccchhHHHHHHHHHhc---------------------------
Confidence 3455678888888877665542 2234556778888888888888887763
Q ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 035707 566 LEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYS-ASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIAR 644 (713)
Q Consensus 566 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~ 644 (713)
.....-...|.+.|+|.+|...-++... |.. ...|...+.-+...|++.+|.+.|-..- .|+. -..
T Consensus 792 ---~~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~--~p~~------aiq 858 (1636)
T KOG3616|consen 792 ---DLFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG--EPDK------AIQ 858 (1636)
T ss_pred ---chhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc--CchH------HHH
Confidence 2233445667788888888777666543 322 3345555555666777777666553210 1221 112
Q ss_pred HHHHhcCCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 035707 645 VLRQIGGESMATIRCFLTDALRLDRTN-TTAWYNLGLLYKTYAGASALEAVECFEAA 700 (713)
Q Consensus 645 ~~~~~g~~~l~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~~~A~~~~~~a 700 (713)
.|-+.|.++ .-+....+ ..|+. .+.+..+|.-|...|+ ...|...|-+|
T Consensus 859 mydk~~~~d--dmirlv~k---~h~d~l~dt~~~f~~e~e~~g~--lkaae~~flea 908 (1636)
T KOG3616|consen 859 MYDKHGLDD--DMIRLVEK---HHGDHLHDTHKHFAKELEAEGD--LKAAEEHFLEA 908 (1636)
T ss_pred HHHhhCcch--HHHHHHHH---hChhhhhHHHHHHHHHHHhccC--hhHHHHHHHhh
Confidence 333444443 33333221 22222 2445556666666666 66666655544
No 203
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.26 E-value=3.5e-06 Score=74.36 Aligned_cols=90 Identities=18% Similarity=0.179 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCC--------hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCC--
Q 035707 619 QEALVSFRKALDAEPNHVPSLVSIARVLRQIGGES--------MATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGA-- 688 (713)
Q Consensus 619 ~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--------l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-- 688 (713)
+.|.+.++.....+|.+++.+++.|.++..+.++. +++|+.-|++++.++|+...+++.+|.+|...+.-
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~ 87 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP 87 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC
Confidence 34444444444444444444444444444433321 23444455555555555555555555555443220
Q ss_pred -------CHHHHHHHHHHHHccccCCC
Q 035707 689 -------SALEAVECFEAAALLEESAP 708 (713)
Q Consensus 689 -------~~~~A~~~~~~a~~l~p~~~ 708 (713)
.+++|..+|++|...+|+|.
T Consensus 88 d~~~A~~~F~kA~~~FqkAv~~~P~ne 114 (186)
T PF06552_consen 88 DTAEAEEYFEKATEYFQKAVDEDPNNE 114 (186)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 25666777777777777654
No 204
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=0.00055 Score=63.91 Aligned_cols=155 Identities=14% Similarity=0.180 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 035707 458 DVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVN 537 (713)
Q Consensus 458 ~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 537 (713)
+..+..+++-+. .+.+.++.++.-.|.|.-....+.+.++.+|. ..+.+...++++.++.|+.+.|..+|++
T Consensus 166 ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e-~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ 237 (366)
T KOG2796|consen 166 ESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPE-QEPQLLSGLGRISMQIGDIKTAEKYFQD 237 (366)
T ss_pred hhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCc-ccHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 455555555432 57778888999999999999999999998853 6788889999999999999999999997
Q ss_pred HHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCC
Q 035707 538 LLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGL 617 (713)
Q Consensus 538 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 617 (713)
.-+.... ........-+..+.+.+|.-.+++..|...|.+.+..+|.++.+.++.+.+....|+
T Consensus 238 vek~~~k----------------L~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~ 301 (366)
T KOG2796|consen 238 VEKVTQK----------------LDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGK 301 (366)
T ss_pred HHHHHhh----------------hhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHH
Confidence 6644321 112233466778888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCH
Q 035707 618 QQEALVSFRKALDAEPNHV 636 (713)
Q Consensus 618 ~~eA~~~~~~al~~~p~~~ 636 (713)
...|++..+.++...|...
T Consensus 302 l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 302 LKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHHHHHHHHHhccCCccc
Confidence 9999999999999999753
No 205
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.25 E-value=3.1e-06 Score=86.21 Aligned_cols=70 Identities=24% Similarity=0.166 Sum_probs=64.5
Q ss_pred cCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHhcCCChHHHHHHHHHHHhhC
Q 035707 597 INPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPS---LVSIARVLRQIGGESMATIRCFLTDALRLD 668 (713)
Q Consensus 597 ~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~l~~A~~~~~~al~~~ 668 (713)
.+|+++..|+++|.+|...|++++|+..|+++++++|++.++ |+++|.+|..+|+++ +|+..+++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~d--EAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGK--KAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhc
Confidence 468889999999999999999999999999999999999855 999999999999987 9999999999973
No 206
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.20 E-value=2.9e-06 Score=66.60 Aligned_cols=67 Identities=28% Similarity=0.360 Sum_probs=52.6
Q ss_pred ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----C---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 035707 565 SLEMETWHDLANVYTSLSQWRDAEVCLSKSKAIN----P---YSASGWHSTGLLYEAKGLQQEALVSFRKALDA 631 (713)
Q Consensus 565 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p---~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 631 (713)
|....++..+|.+|..+|++++|+.+|++++.+. + ....++.++|.++...|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3447788899999999999999999999888652 1 12457888888888899999999988888765
No 207
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.18 E-value=3.3e-05 Score=63.66 Aligned_cols=101 Identities=18% Similarity=0.213 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHH
Q 035707 570 TWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHV----PSLVSIARV 645 (713)
Q Consensus 570 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~----~~~~~la~~ 645 (713)
.+-.-|......|+.+.|++.|.+++.+.|..+.+|++.+..+.-+|+.++|+..+++++++..+.. .++...|.+
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l 124 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL 124 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 3444566667777777777777777777777777777777777777777777777777777654332 356667777
Q ss_pred HHHhcCCChHHHHHHHHHHHhhCCCCH
Q 035707 646 LRQIGGESMATIRCFLTDALRLDRTNT 672 (713)
Q Consensus 646 ~~~~g~~~l~~A~~~~~~al~~~p~~~ 672 (713)
|...|+.+ .|+.-|+.+-++.....
T Consensus 125 yRl~g~dd--~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 125 YRLLGNDD--AARADFEAAAQLGSKFA 149 (175)
T ss_pred HHHhCchH--HHHHhHHHHHHhCCHHH
Confidence 77777776 77777777777655443
No 208
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.18 E-value=5.9e-06 Score=64.80 Aligned_cols=73 Identities=21% Similarity=0.297 Sum_probs=60.6
Q ss_pred CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHH
Q 035707 510 DQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEV 589 (713)
Q Consensus 510 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 589 (713)
+...++..+|.++..+|++++|+..|++++++.... ....+..+.++.++|.++...|++++|+.
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 67 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQL---------------GDDHPDTANTLNNLGECYYRLGDYEEALE 67 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT---------------TTHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH---------------CCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 456788999999999999999999999999883221 22234458899999999999999999999
Q ss_pred HHHHHHhc
Q 035707 590 CLSKSKAI 597 (713)
Q Consensus 590 ~~~~al~~ 597 (713)
++++++++
T Consensus 68 ~~~~al~i 75 (78)
T PF13424_consen 68 YYQKALDI 75 (78)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99999875
No 209
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.17 E-value=6.1e-06 Score=84.14 Aligned_cols=72 Identities=15% Similarity=0.092 Sum_probs=67.2
Q ss_pred cCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhH---HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 035707 561 NHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASG---WHSTGLLYEAKGLQQEALVSFRKALDAE 632 (713)
Q Consensus 561 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~lg~~~~~~g~~~eA~~~~~~al~~~ 632 (713)
....|..+..|+++|.+|...|++++|+.+|+++++++|++..+ |+++|.+|..+|++++|+.++++++++.
T Consensus 68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 34578889999999999999999999999999999999999854 9999999999999999999999999973
No 210
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.00039 Score=63.77 Aligned_cols=159 Identities=9% Similarity=0.065 Sum_probs=112.7
Q ss_pred cCCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchH--HHHHHHHHHHHhhcccccccHHHHH-hcHHHHH
Q 035707 350 ENSDCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMA--SIANCLLGVLLSSQSRSVVSDSKRI-LKQSQAL 426 (713)
Q Consensus 350 ~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~--~~a~~~lg~~~~~~~~~~~~~~~~~-~~~~~A~ 426 (713)
.+.++....+.-+.-|++..+.. +|+.+++++++ +...-..+. +.-+..+|.+| +.. .++++|+
T Consensus 68 ~skhDaat~YveA~~cykk~~~~-eAv~cL~~aie-Iyt~~Grf~~aAk~~~~iaEiy-----------Esdl~d~ekaI 134 (288)
T KOG1586|consen 68 GSKHDAATTYVEAANCYKKVDPE-EAVNCLEKAIE-IYTDMGRFTMAAKHHIEIAEIY-----------ESDLQDFEKAI 134 (288)
T ss_pred CCchhHHHHHHHHHHHhhccChH-HHHHHHHHHHH-HHHhhhHHHHHHhhhhhHHHHH-----------hhhHHHHHHHH
Confidence 44456666666677788899999 99999999999 544433332 34556788888 444 7889999
Q ss_pred HHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCch------HHHHHHHHHHHHcCCHHH
Q 035707 427 VALETAEKTMRERD------PYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNV------KGYLLLARVLSAQKQFAD 494 (713)
Q Consensus 427 ~~~~~al~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~------~~~~~la~~~~~~g~~~~ 494 (713)
..|+++- .....+ -..+...+..-...++|.+|+..|+++....-+++. ..++.-|.|+....+.-.
T Consensus 135 ~~YE~Aa-e~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~ 213 (288)
T KOG1586|consen 135 AHYEQAA-EYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVN 213 (288)
T ss_pred HHHHHHH-HHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHH
Confidence 9999987 654332 234556677778899999999999999876655541 234455677777789888
Q ss_pred HHHHHHHHhhccCCCCcHHHHHHHHHHH
Q 035707 495 AESVINDSLDQTGKWDQGELLRTKAKLQ 522 (713)
Q Consensus 495 A~~~~~~al~~~p~~~~~~~~~~la~~~ 522 (713)
+...+++..+.+|...+.+=...+..+.
T Consensus 214 a~~ALeky~~~dP~F~dsREckflk~L~ 241 (288)
T KOG1586|consen 214 AQRALEKYQELDPAFTDSRECKFLKDLL 241 (288)
T ss_pred HHHHHHHHHhcCCcccccHHHHHHHHHH
Confidence 9999999999998655544333343333
No 211
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.13 E-value=0.00023 Score=73.52 Aligned_cols=98 Identities=26% Similarity=0.359 Sum_probs=87.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q 035707 609 GLLYEAKGLQQEALVSFRKALDAEPNHV-PSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAG 687 (713)
Q Consensus 609 g~~~~~~g~~~eA~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 687 (713)
|..+...|+...|++++..|+...|... ....+++.++.+.|-.. .|-.++.+++.+....|-.++.+|..|..+.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~--da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~ 691 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHL--DATKLLLQALAINSSEPLTFLSLGNAYLALKN 691 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhc--cHHHHHHHHHhhcccCchHHHhcchhHHHHhh
Confidence 4445678999999999999999888543 46789999999999776 89999999999998888999999999999999
Q ss_pred CCHHHHHHHHHHHHccccCCCCC
Q 035707 688 ASALEAVECFEAAALLEESAPVE 710 (713)
Q Consensus 688 ~~~~~A~~~~~~a~~l~p~~~~~ 710 (713)
.+.|++.|+.|++++|++|+.
T Consensus 692 --i~~a~~~~~~a~~~~~~~~~~ 712 (886)
T KOG4507|consen 692 --ISGALEAFRQALKLTTKCPEC 712 (886)
T ss_pred --hHHHHHHHHHHHhcCCCChhh
Confidence 999999999999999999874
No 212
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.11 E-value=9.3e-05 Score=61.11 Aligned_cols=97 Identities=28% Similarity=0.286 Sum_probs=86.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC----HHHHHHHHH
Q 035707 605 WHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTN----TTAWYNLGL 680 (713)
Q Consensus 605 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~----~~~~~~lg~ 680 (713)
+-..|......|+.+.|++.|.+++.+-|..+.+|++.+..+.-+|+.+ +|+.-+++++++..+. -.++...|.
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e--~ALdDLn~AleLag~~trtacqa~vQRg~ 123 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDE--EALDDLNKALELAGDQTRTACQAFVQRGL 123 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChH--HHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 4456788889999999999999999999999999999999999999987 9999999999986443 256788999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHcccc
Q 035707 681 LYKTYAGASALEAVECFEAAALLEE 705 (713)
Q Consensus 681 ~~~~~g~~~~~~A~~~~~~a~~l~p 705 (713)
+|...|+ -+.|..-|+.|.++-.
T Consensus 124 lyRl~g~--dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 124 LYRLLGN--DDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHhCc--hHHHHHhHHHHHHhCC
Confidence 9999999 9999999999987653
No 213
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.11 E-value=2.6e-05 Score=68.94 Aligned_cols=97 Identities=18% Similarity=0.210 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC----------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCC
Q 035707 584 WRDAEVCLSKSKAINPYSASGWHSTGLLYEAKG----------LQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGES 653 (713)
Q Consensus 584 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g----------~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 653 (713)
|+.|.+.++.....+|.+++.+++-|.++..+. .+++|+.-|++++.++|+..++++++|.+|...+...
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 678999999999999999999999888876553 3567888899999999999999999999999887632
Q ss_pred ---------hHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 035707 654 ---------MATIRCFLTDALRLDRTNTTAWYNLGL 680 (713)
Q Consensus 654 ---------l~~A~~~~~~al~~~p~~~~~~~~lg~ 680 (713)
+++|..+|++|...+|++...+..|..
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM 122 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 457888999999999999766555543
No 214
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.013 Score=64.91 Aligned_cols=167 Identities=8% Similarity=0.092 Sum_probs=99.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHH
Q 035707 444 IYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQI 523 (713)
Q Consensus 444 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~ 523 (713)
.-..|.-++..|.|+.|.-+|..+ .-|..++..+..+|+|+.|...-+++ ++...|...+..+.
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCv 1260 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACV 1260 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHh
Confidence 344555556666666555544322 44555666666666666666665554 33444555555544
Q ss_pred HhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh
Q 035707 524 AQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSAS 603 (713)
Q Consensus 524 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 603 (713)
..+.+.-|. +.. -.-...++-+-.+...|...|-+++-+..++.++.+..-+..
T Consensus 1261 d~~EFrlAQ--------iCG------------------L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMg 1314 (1666)
T KOG0985|consen 1261 DKEEFRLAQ--------ICG------------------LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMG 1314 (1666)
T ss_pred chhhhhHHH--------hcC------------------ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHH
Confidence 444433221 100 001122455667888899999999999999999988877777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-C-------CCCHHHHHHHHHHHHHhcCCC
Q 035707 604 GWHSTGLLYEAKGLQQEALVSFRKALDA-E-------PNHVPSLVSIARVLRQIGGES 653 (713)
Q Consensus 604 ~~~~lg~~~~~~g~~~eA~~~~~~al~~-~-------p~~~~~~~~la~~~~~~g~~~ 653 (713)
.+..+|.+|.+- ++++-.+.++-.... + -+....|..+..+|.+-..||
T Consensus 1315 mfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyD 1371 (1666)
T KOG0985|consen 1315 MFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYD 1371 (1666)
T ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 888888888764 455555544432221 1 123456777888888777777
No 215
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.04 E-value=0.0078 Score=64.74 Aligned_cols=123 Identities=15% Similarity=0.123 Sum_probs=103.3
Q ss_pred HhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC---CchHHHHHHHHHHHHcCCHHHH
Q 035707 419 ILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEAR---SNVKGYLLLARVLSAQKQFADA 495 (713)
Q Consensus 419 ~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~~la~~~~~~g~~~~A 495 (713)
....+.|.+.+.... ...|+..-.++..|.++...|+.++|++.|++++..... ...-.++.++.++..+++|++|
T Consensus 246 ~~~~~~a~~lL~~~~-~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 246 DVPLEEAEELLEEML-KRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCCHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 456788999999999 999999999999999999999999999999998853222 1114678899999999999999
Q ss_pred HHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHh
Q 035707 496 ESVINDSLDQTGKWDQGELLRTKAKLQIAQGRL-------KNAIETYVNLLAVLQ 543 (713)
Q Consensus 496 ~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~~l~~~~ 543 (713)
...+.+..+.+. |......+..|.++...|+. ++|.+.|.++-....
T Consensus 325 ~~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 325 AEYFLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 999999999764 56677778889999999999 788888887766543
No 216
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.97 E-value=0.001 Score=68.28 Aligned_cols=189 Identities=19% Similarity=0.130 Sum_probs=113.4
Q ss_pred HHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHH
Q 035707 417 KRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAE 496 (713)
Q Consensus 417 ~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~ 496 (713)
.+..+...-++.-.+|+ +++|+.++++..|+.-. .....+|.++|+++++...... .........|..-+.
T Consensus 179 WRERnp~aRIkaA~eAL-ei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~l-----g~s~~~~~~g~~~e~- 249 (539)
T PF04184_consen 179 WRERNPQARIKAAKEAL-EINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASL-----GKSQFLQHHGHFWEA- 249 (539)
T ss_pred HhcCCHHHHHHHHHHHH-HhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhh-----chhhhhhcccchhhh-
Confidence 34455556666666666 66666666665555422 2234566666666655433211 000011111111111
Q ss_pred HHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHH
Q 035707 497 SVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLAN 576 (713)
Q Consensus 497 ~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 576 (713)
....+. .....+...+|.+..+.|+.++|++.++.+++..|. .+...+..+|..
T Consensus 250 -----~~~Rdt-~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~--------------------~~~l~IrenLie 303 (539)
T PF04184_consen 250 -----WHRRDT-NVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN--------------------LDNLNIRENLIE 303 (539)
T ss_pred -----hhcccc-chhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc--------------------cchhhHHHHHHH
Confidence 000000 012456678899999999999999999999987663 234678899999
Q ss_pred HHHHCCCHHHHHHHHHHHHhc-CCCChhHHHHHHHHHHHc-CC---------------HHHHHHHHHHHHhcCCCCHHHH
Q 035707 577 VYTSLSQWRDAEVCLSKSKAI-NPYSASGWHSTGLLYEAK-GL---------------QQEALVSFRKALDAEPNHVPSL 639 (713)
Q Consensus 577 ~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~-g~---------------~~eA~~~~~~al~~~p~~~~~~ 639 (713)
++...+.+.++...+.+.-++ -|+++...+..+.+-.+. ++ -..|++.+.+|++.+|.-+..+
T Consensus 304 ~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 304 ALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred HHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 999999999999998886544 356666666655543321 11 2346788999999998766544
Q ss_pred H
Q 035707 640 V 640 (713)
Q Consensus 640 ~ 640 (713)
.
T Consensus 384 L 384 (539)
T PF04184_consen 384 L 384 (539)
T ss_pred h
Confidence 3
No 217
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=0.032 Score=57.10 Aligned_cols=211 Identities=16% Similarity=0.114 Sum_probs=140.7
Q ss_pred HcCCHHHHHHHHHHHHhhhcC------Cc-------hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc---CCC-----Cc
Q 035707 453 EQRKLDVALYYAKKLLNLEAR------SN-------VKGYLLLARVLSAQKQFADAESVINDSLDQT---GKW-----DQ 511 (713)
Q Consensus 453 ~~g~~~~A~~~~~~~l~~~p~------~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~-----~~ 511 (713)
..|-+++|.++-++++..... .. ...+-.+..+-.-.|++.+|++-+..+.+.. |.+ ..
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~ 366 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE 366 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence 356678888888887754211 11 0123345566677899999998888776653 321 12
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHH
Q 035707 512 GELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCL 591 (713)
Q Consensus 512 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 591 (713)
..+...+|......+.++.|...|..+.+.-... ...+.+-.++|.+|.+.|+-++--+.+
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-------------------dl~a~~nlnlAi~YL~~~~~ed~y~~l 427 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-------------------DLQAFCNLNLAISYLRIGDAEDLYKAL 427 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-------------------HHHHHHHHhHHHHHHHhccHHHHHHHH
Confidence 3456677777788889999999999988874321 223556678899999988765544444
Q ss_pred HHHHhcCCCC----------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCCChH
Q 035707 592 SKSKAINPYS----------ASGWHSTGLLYEAKGLQQEALVSFRKALDAEPN------HVPSLVSIARVLRQIGGESMA 655 (713)
Q Consensus 592 ~~al~~~p~~----------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~l~ 655 (713)
+. +.|.+ ..+++..|...+.++++.||.....+.++.... ..-.+..++.+....|+..
T Consensus 428 d~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~-- 502 (629)
T KOG2300|consen 428 DL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTV-- 502 (629)
T ss_pred Hh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchH--
Confidence 43 44442 346777888888999999999999999886521 1235566788888888886
Q ss_pred HHHHHHHHHHhhC---CCCHHHHH---HHHHHHHHhCC
Q 035707 656 TIRCFLTDALRLD---RTNTTAWY---NLGLLYKTYAG 687 (713)
Q Consensus 656 ~A~~~~~~al~~~---p~~~~~~~---~lg~~~~~~g~ 687 (713)
++.+..+-++++. |+.+..+. .+-.+|...|+
T Consensus 503 es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~ 540 (629)
T KOG2300|consen 503 ESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGE 540 (629)
T ss_pred HHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCc
Confidence 8888887777653 55443322 24566666665
No 218
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.93 E-value=0.039 Score=57.34 Aligned_cols=136 Identities=8% Similarity=-0.142 Sum_probs=90.4
Q ss_pred cCCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHH
Q 035707 350 ENSDCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVAL 429 (713)
Q Consensus 350 ~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~ 429 (713)
.+|.|+.+|..+..-+-.+ .++ +....|++.+. ..|..+ .+|..-...- .+.++++.-..+|
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~-~~R~~YEq~~~-~FP~s~----r~W~~yi~~E-----------l~skdfe~VEkLF 76 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PID-KVRETYEQLVN-VFPSSP----RAWKLYIERE-----------LASKDFESVEKLF 76 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHH-HHHHHHHHHhc-cCCCCc----HHHHHHHHHH-----------HHhhhHHHHHHHH
Confidence 5899999999998766555 788 99999999999 788888 8887777666 6788999999999
Q ss_pred HHHHHhhCCCCHHHHH-HHHHHHHHcCCHHHHHHH----HHHHHh---hhcCCchHHHHHHHHHHH---------HcCCH
Q 035707 430 ETAEKTMRERDPYIIY-HLCLENAEQRKLDVALYY----AKKLLN---LEARSNVKGYLLLARVLS---------AQKQF 492 (713)
Q Consensus 430 ~~al~~~~p~~~~~~~-~la~~~~~~g~~~~A~~~----~~~~l~---~~p~~~~~~~~~la~~~~---------~~g~~ 492 (713)
.+++ ..- -+.+.|. .+..+....++...+... |+-++. .++.+. ..|...+..+. .+.+.
T Consensus 77 ~RCL-vkv-LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~-siW~eYi~FL~~vea~gk~ee~QRI 153 (656)
T KOG1914|consen 77 SRCL-VKV-LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSY-SIWDEYINFLEGVEAVGKYEENQRI 153 (656)
T ss_pred HHHH-HHH-hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccc-hhHHHHHHHHHcccccccHHHHHHH
Confidence 9998 322 2345553 344444445555443333 332332 234444 56665554432 33466
Q ss_pred HHHHHHHHHHhhcc
Q 035707 493 ADAESVINDSLDQT 506 (713)
Q Consensus 493 ~~A~~~~~~al~~~ 506 (713)
+.-...|++++...
T Consensus 154 ~~vRriYqral~tP 167 (656)
T KOG1914|consen 154 TAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHhcCc
Confidence 67788888888653
No 219
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.89 E-value=0.00019 Score=71.68 Aligned_cols=135 Identities=10% Similarity=0.089 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 035707 570 TWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEA-KGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQ 648 (713)
Q Consensus 570 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 648 (713)
+|..+.....+.+..+.|..+|.++.+..+.+..+|...|.+... .++.+.|...|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 677777888888889999999999997777788999999999777 5566669999999999999999999999999999
Q ss_pred hcCCChHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCCC
Q 035707 649 IGGESMATIRCFLTDALRLDRTNT---TAWYNLGLLYKTYAGASALEAVECFEAAALLEESAP 708 (713)
Q Consensus 649 ~g~~~l~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~~ 708 (713)
.++.+ .|+.+|++++..-|... ..|......-...|+ .+....+++++.+..|+++
T Consensus 83 ~~d~~--~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gd--l~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 83 LNDIN--NARALFERAISSLPKEKQSKKIWKKFIEFESKYGD--LESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp TT-HH--HHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHTTTS-
T ss_pred hCcHH--HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHhhhhh
Confidence 99876 99999999998866654 688889999999999 9999999999999887743
No 220
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=0.0014 Score=63.32 Aligned_cols=163 Identities=13% Similarity=0.032 Sum_probs=118.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcc
Q 035707 481 LLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQ 560 (713)
Q Consensus 481 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 560 (713)
.-+.++...|++.+|-...++.++..| .+..++..--.++...|+...-...+++++...
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d~P--tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w------------------ 167 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDDYP--TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW------------------ 167 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHhCc--hhhhhhhhhhhHHHhccchhhhhhHHHHhcccc------------------
Confidence 345566777888888888888888888 667677666777888888888888888877652
Q ss_pred cCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--H--
Q 035707 561 NHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNH--V-- 636 (713)
Q Consensus 561 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~--~-- 636 (713)
..+.|-...+.-.++..+...|-+++|++.-+++++++|.+..+.+.++.++...|++.++.+...+--..-... .
T Consensus 168 n~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlas 247 (491)
T KOG2610|consen 168 NADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLAS 247 (491)
T ss_pred CCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHh
Confidence 233455566666777888888889999998899999998888888888888888888888888876643321110 0
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 035707 637 PSLVSIARVLRQIGGESMATIRCFLTDAL 665 (713)
Q Consensus 637 ~~~~~la~~~~~~g~~~l~~A~~~~~~al 665 (713)
.-|.-.+..+...+.++ .|+..|.+-+
T Consensus 248 HNyWH~Al~~iE~aeye--~aleIyD~ei 274 (491)
T KOG2610|consen 248 HNYWHTALFHIEGAEYE--KALEIYDREI 274 (491)
T ss_pred hhhHHHHHhhhcccchh--HHHHHHHHHH
Confidence 11233455666667776 8888887544
No 221
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.87 E-value=3.4e-05 Score=52.46 Aligned_cols=38 Identities=24% Similarity=0.411 Sum_probs=16.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 035707 605 WHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSI 642 (713)
Q Consensus 605 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 642 (713)
+..+|.+|...|++++|++.|+++++.+|+++.+|..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 34444444444444444444444444444444444433
No 222
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.86 E-value=3e-05 Score=52.74 Aligned_cols=42 Identities=29% Similarity=0.529 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 035707 569 ETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGL 610 (713)
Q Consensus 569 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 610 (713)
.+|..+|.+|...|++++|+.+|+++++.+|+++.+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 578999999999999999999999999999999999999885
No 223
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.00025 Score=65.32 Aligned_cols=97 Identities=25% Similarity=0.218 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 035707 569 ETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQ 648 (713)
Q Consensus 569 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 648 (713)
.-+..-|..++...+|..|+.+|.+++.++|..+..|.+.+.++.+..+++.+.....+++++.|+.+..++.+|..+..
T Consensus 11 ~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~ 90 (284)
T KOG4642|consen 11 EQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ 90 (284)
T ss_pred HHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh
Confidence 33445567777888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCChHHHHHHHHHHHhh
Q 035707 649 IGGESMATIRCFLTDALRL 667 (713)
Q Consensus 649 ~g~~~l~~A~~~~~~al~~ 667 (713)
...++ +|+..+.++..+
T Consensus 91 s~~~~--eaI~~Lqra~sl 107 (284)
T KOG4642|consen 91 SKGYD--EAIKVLQRAYSL 107 (284)
T ss_pred hcccc--HHHHHHHHHHHH
Confidence 99998 999999999654
No 224
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.0037 Score=57.99 Aligned_cols=200 Identities=15% Similarity=0.157 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC-----chHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc---CCCCcHHH
Q 035707 443 IIYHLCLENAEQRKLDVALYYAKKLLNLEARS-----NVKGYLLLARVLSAQKQFADAESVINDSLDQT---GKWDQGEL 514 (713)
Q Consensus 443 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~ 514 (713)
.+..-+.+|....+|++|..++.++.+-...+ ...++-..+.+......+.++..+++++...+ ..++....
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAm 112 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAM 112 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHH
Confidence 44455677888899999999999998654433 22455667777888899999999999998774 22233444
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 035707 515 LRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKS 594 (713)
Q Consensus 515 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 594 (713)
-...+--....-++++|+++|++++.+.... .......+.+...+.++.+..++.+|-..+.+-
T Consensus 113 aleKAak~lenv~Pd~AlqlYqralavve~~----------------dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe 176 (308)
T KOG1585|consen 113 ALEKAAKALENVKPDDALQLYQRALAVVEED----------------DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKE 176 (308)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc----------------chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHh
Confidence 4455555567889999999999999986532 111233667778889999999999998887765
Q ss_pred Hhc----C--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHhcCCChHHHHHHH
Q 035707 595 KAI----N--PYSASGWHSTGLLYEAKGLQQEALVSFRKALDAE----PNHVPSLVSIARVLRQIGGESMATIRCFL 661 (713)
Q Consensus 595 l~~----~--p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~l~~A~~~~ 661 (713)
... . +.....+.....+|....+|..|..+|+..-++. |++..+..+|-..|- .|+.+ ++...+
T Consensus 177 ~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E--~~~kvl 250 (308)
T KOG1585|consen 177 GVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIE--EIKKVL 250 (308)
T ss_pred hhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHH--HHHHHH
Confidence 432 2 2223345555666777789999999999877653 455566666655443 34443 554443
No 225
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.83 E-value=0.00087 Score=66.98 Aligned_cols=127 Identities=9% Similarity=0.022 Sum_probs=107.7
Q ss_pred HHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHH
Q 035707 417 KRILKQSQALVALETAEKTMRERDPYIIYHLCLENAE-QRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADA 495 (713)
Q Consensus 417 ~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A 495 (713)
.+.+..+.|..+|.+|. +..+....+|...|.+-+. .++.+.|...|+.+++..|.+. ..|......+...++.+.|
T Consensus 12 ~r~~g~~~aR~vF~~a~-~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~-~~~~~Y~~~l~~~~d~~~a 89 (280)
T PF05843_consen 12 RRTEGIEAARKVFKRAR-KDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDP-DFWLEYLDFLIKLNDINNA 89 (280)
T ss_dssp HHHHHHHHHHHHHHHHH-CCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H-HHHHHHHHHHHHTT-HHHH
T ss_pred HHhCChHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHhCcHHHH
Confidence 67788999999999999 7777788999999999777 5677779999999999999999 9999999999999999999
Q ss_pred HHHHHHHhhccCCCC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 035707 496 ESVINDSLDQTGKWD-QGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFR 545 (713)
Q Consensus 496 ~~~~~~al~~~p~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 545 (713)
..+|++++..-+... ...+|......-...|+.+....+.+++.+..|..
T Consensus 90 R~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 90 RALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 999999998866333 34688899999999999999999999999987764
No 226
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.82 E-value=0.0026 Score=65.41 Aligned_cols=228 Identities=12% Similarity=-0.027 Sum_probs=130.2
Q ss_pred HHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHH
Q 035707 365 CAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYII 444 (713)
Q Consensus 365 ~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~ 444 (713)
..+..+.. .-++..++|++ .+|++. .++..|+.-. .....+|.++|++++ +.....
T Consensus 178 AWRERnp~-aRIkaA~eALe-i~pdCA----dAYILLAEEe-------------A~Ti~Eae~l~rqAv-kAgE~~---- 233 (539)
T PF04184_consen 178 AWRERNPQ-ARIKAAKEALE-INPDCA----DAYILLAEEE-------------ASTIVEAEELLRQAV-KAGEAS---- 233 (539)
T ss_pred HHhcCCHH-HHHHHHHHHHH-hhhhhh----HHHhhccccc-------------ccCHHHHHHHHHHHH-HHHHHh----
Confidence 44566667 88899999999 899988 8888887643 234577888888887 433211
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhhcCCc-hHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHH
Q 035707 445 YHLCLENAEQRKLDVALYYAKKLLNLEARSN-VKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQI 523 (713)
Q Consensus 445 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~ 523 (713)
+.........|..-+ .+...+.++ ..+...+|.+..+.|+.++|++.++..++..|..++..++.++..++.
T Consensus 234 lg~s~~~~~~g~~~e-------~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LL 306 (539)
T PF04184_consen 234 LGKSQFLQHHGHFWE-------AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALL 306 (539)
T ss_pred hchhhhhhcccchhh-------hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHH
Confidence 111111111121111 111111111 145567788888888888888888888877664445667778888888
Q ss_pred HhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHH-------------CC---CHHHH
Q 035707 524 AQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTS-------------LS---QWRDA 587 (713)
Q Consensus 524 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-------------~g---~~~~A 587 (713)
..+.|.++...+.+--++. -|..+...+.-+.+-.+ .| .-..|
T Consensus 307 elq~Yad~q~lL~kYdDi~---------------------lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~a 365 (539)
T PF04184_consen 307 ELQAYADVQALLAKYDDIS---------------------LPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNA 365 (539)
T ss_pred hcCCHHHHHHHHHHhcccc---------------------CCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHH
Confidence 8888888777666632110 12223333333332221 11 12347
Q ss_pred HHHHHHHHhcCCCChhHHHHHHH------HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 035707 588 EVCLSKSKAINPYSASGWHSTGL------LYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARV 645 (713)
Q Consensus 588 ~~~~~~al~~~p~~~~~~~~lg~------~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~ 645 (713)
++.+.++++.+|..+..+..+=. -..+.|+ .||+.+---.+..-.+-..++..|-..
T Consensus 366 veAi~RAvefNPHVp~YLLe~K~LilPPehilkrGD-SEAiaYAf~hL~hWk~veGAL~lL~~t 428 (539)
T PF04184_consen 366 VEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGD-SEAIAYAFFHLQHWKRVEGALNLLHCT 428 (539)
T ss_pred HHHHHHHHHhCCCCchhhhccCCCCCChHHhcCCCc-HHHHHHHHHHHHHHhcCHhHHHHHHHH
Confidence 78899999999977654432211 1334554 677776655554433334444444333
No 227
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.0015 Score=63.20 Aligned_cols=159 Identities=14% Similarity=0.045 Sum_probs=126.3
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 035707 517 TKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKA 596 (713)
Q Consensus 517 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 596 (713)
..+.+....|++.+|-...+++++..|.+ .-++..--.+++.+|+...-...+++.+.
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d~PtD----------------------lla~kfsh~a~fy~G~~~~~k~ai~kIip 165 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDDYPTD----------------------LLAVKFSHDAHFYNGNQIGKKNAIEKIIP 165 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHhCchh----------------------hhhhhhhhhHHHhccchhhhhhHHHHhcc
Confidence 44556677899999999999999886654 67777777888999999999999999987
Q ss_pred c-CCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC-
Q 035707 597 I-NPYS---ASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTN- 671 (713)
Q Consensus 597 ~-~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~- 671 (713)
. +|+- ..+.-.++..+...|-|++|.+..+++++++|.+..+....+.++.-.|++. ++.++..+--..=...
T Consensus 166 ~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~K--eg~eFM~~ted~Wr~s~ 243 (491)
T KOG2610|consen 166 KWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHK--EGKEFMYKTEDDWRQSW 243 (491)
T ss_pred ccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhh--hHHHHHHhcccchhhhh
Confidence 7 5554 3344556777889999999999999999999999999999999999999997 8988876543221111
Q ss_pred ---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 035707 672 ---TTAWYNLGLLYKTYAGASALEAVECFEAAA 701 (713)
Q Consensus 672 ---~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~ 701 (713)
..-|.+-+..|..-+. ++.|++.|.+-+
T Consensus 244 mlasHNyWH~Al~~iE~ae--ye~aleIyD~ei 274 (491)
T KOG2610|consen 244 MLASHNYWHTALFHIEGAE--YEKALEIYDREI 274 (491)
T ss_pred HHHhhhhHHHHHhhhcccc--hhHHHHHHHHHH
Confidence 1235567888888899 999999998654
No 228
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.0026 Score=58.53 Aligned_cols=137 Identities=18% Similarity=0.173 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh------hHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCC-----
Q 035707 568 METWHDLANVYTSLSQWRDAEVCLSKSKAINPYSA------SGWHSTGLLYEAK-GLQQEALVSFRKALDAEPNH----- 635 (713)
Q Consensus 568 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~-g~~~eA~~~~~~al~~~p~~----- 635 (713)
...+...+.+|-+ ++..+|+.++++++++..+-. .-+..+|.+|..- .++++|+.+|+++-+.....
T Consensus 74 at~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ss 152 (288)
T KOG1586|consen 74 ATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSS 152 (288)
T ss_pred HHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhh
Confidence 4445555555544 478888888888887764432 2345678887765 78899999999887654321
Q ss_pred -HHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHH-------HHHHHHHHHHhCCCCHHHHHHHHHHHHccccCC
Q 035707 636 -VPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTA-------WYNLGLLYKTYAGASALEAVECFEAAALLEESA 707 (713)
Q Consensus 636 -~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~-------~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~ 707 (713)
-.++...+..-...++|. +|+..|++..+..-+|+.. ++.-|.++....+ .-.+...+++-.+++|..
T Consensus 153 ANKC~lKvA~yaa~leqY~--~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D--~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 153 ANKCLLKVAQYAAQLEQYS--KAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKAD--EVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhccc--HHHHHHHHHHHHhcCCcc
Confidence 234555666667788887 8999999888776665432 3445777877788 788888888888888876
Q ss_pred CC
Q 035707 708 PV 709 (713)
Q Consensus 708 ~~ 709 (713)
..
T Consensus 229 ~d 230 (288)
T KOG1586|consen 229 TD 230 (288)
T ss_pred cc
Confidence 54
No 229
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=7.4e-05 Score=68.64 Aligned_cols=95 Identities=19% Similarity=0.124 Sum_probs=86.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q 035707 608 TGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAG 687 (713)
Q Consensus 608 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 687 (713)
-|..++...+|+.|+..|.+++.++|..+..+.+.+.++.+..+++ .+...-.++++++|+...+++.+|........
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~--~v~~dcrralql~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWE--PVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhh--hhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc
Confidence 4555666778999999999999999999999999999999999998 89999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHccccC
Q 035707 688 ASALEAVECFEAAALLEES 706 (713)
Q Consensus 688 ~~~~~A~~~~~~a~~l~p~ 706 (713)
+++|+.++++|..+.-.
T Consensus 94 --~~eaI~~Lqra~sl~r~ 110 (284)
T KOG4642|consen 94 --YDEAIKVLQRAYSLLRE 110 (284)
T ss_pred --ccHHHHHHHHHHHHHhc
Confidence 99999999999775443
No 230
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.0099 Score=55.27 Aligned_cols=191 Identities=15% Similarity=0.067 Sum_probs=128.8
Q ss_pred HHHhcHHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhhh-----cCCchHHHHHHHHH
Q 035707 417 KRILKQSQALVALETAEKTMRERDPY------IIYHLCLENAEQRKLDVALYYAKKLLNLE-----ARSNVKGYLLLARV 485 (713)
Q Consensus 417 ~~~~~~~~A~~~~~~al~~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~~~la~~ 485 (713)
...+++++|...+.++. +-..+|.. ++-..+...-....+.++..+|+++.... |+.. ..-...+.-
T Consensus 42 RnAk~feKakdcLlkA~-~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA-AmaleKAak 119 (308)
T KOG1585|consen 42 RNAKKFEKAKDCLLKAS-KGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA-AMALEKAAK 119 (308)
T ss_pred HhhccHHHHHHHHHHHH-HHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH-HHHHHHHHH
Confidence 66778888888888888 55544422 33345556667788999999999988764 3322 222233444
Q ss_pred HHHcCCHHHHHHHHHHHhhccCCCC----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhccc
Q 035707 486 LSAQKQFADAESVINDSLDQTGKWD----QGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQN 561 (713)
Q Consensus 486 ~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 561 (713)
....-++++|+.+|++++..-...+ -.+.+...++++.+..++++|-..+.+-....-. .
T Consensus 120 ~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~----------------~ 183 (308)
T KOG1585|consen 120 ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADK----------------C 183 (308)
T ss_pred HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHH----------------H
Confidence 5567789999999999987642111 2346677889999999999998888776544321 1
Q ss_pred CCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 035707 562 HDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAIN----PYSASGWHSTGLLYEAKGLQQEALVSFR 626 (713)
Q Consensus 562 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~eA~~~~~ 626 (713)
...+.....+.....+|+...+|..|..+++...++. |++..+.-+|-..| ..|+.++....+.
T Consensus 184 ~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 184 DAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred hhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 2233445667777778888889999999999977653 44455666655544 4678777766553
No 231
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.77 E-value=2.5e-05 Score=49.35 Aligned_cols=32 Identities=31% Similarity=0.417 Sum_probs=26.1
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 035707 661 LTDALRLDRTNTTAWYNLGLLYKTYAGASALEAV 694 (713)
Q Consensus 661 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~ 694 (713)
|+++++++|+++.+|++||.+|...|+ +++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~--~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGD--YEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcC--HHhhc
Confidence 677888888888888888888888888 88775
No 232
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.76 E-value=0.021 Score=62.99 Aligned_cols=283 Identities=14% Similarity=0.034 Sum_probs=193.3
Q ss_pred HHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHh-----hCCCCHHHHHHHH
Q 035707 374 EGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKT-----MRERDPYIIYHLC 448 (713)
Q Consensus 374 ~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~~p~~~~~~~~la 448 (713)
+|..+++.+.+ ..+. .+...+|.+|..-+. -...+.+.|+.+|+.+. . ....++.+.+.+|
T Consensus 230 ~a~~~~~~~a~---~g~~----~a~~~~g~~y~~G~~------g~~~d~e~a~~~l~~aa-~~~~~~a~~~~~~a~~~lg 295 (552)
T KOG1550|consen 230 EAFKYYREAAK---LGHS----EAQYALGICYLAGTY------GVTQDLESAIEYLKLAA-ESFKKAATKGLPPAQYGLG 295 (552)
T ss_pred HHHHHHHHHHh---hcch----HHHHHHHHHHhhccc------cccccHHHHHHHHHHHH-HHHHHHHhhcCCccccHHH
Confidence 78888888766 2334 788889999853322 24578899999999987 4 1122566889999
Q ss_pred HHHHHcC-----CHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcC---CHHHHHHHHHHHhhccCCCCcHHHHHHHHH
Q 035707 449 LENAEQR-----KLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQK---QFADAESVINDSLDQTGKWDQGELLRTKAK 520 (713)
Q Consensus 449 ~~~~~~g-----~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~la~ 520 (713)
.+|.+.. ++..|+.+|.++-... ++ .+.+.+|.++.... ++..|..+|..|... .+..+.+.++.
T Consensus 296 ~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~----G~~~A~~~la~ 368 (552)
T KOG1550|consen 296 RLYLQGLGVEKIDYEKALKLYTKAAELG--NP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKA----GHILAIYRLAL 368 (552)
T ss_pred HHHhcCCCCccccHHHHHHHHHHHHhcC--Cc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHc----CChHHHHHHHH
Confidence 9999853 7888999999987764 34 78889999888765 678999999999877 45778888888
Q ss_pred HHHHh----CCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHC-CCHHHHHHHHHHHH
Q 035707 521 LQIAQ----GRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSL-SQWRDAEVCLSKSK 595 (713)
Q Consensus 521 ~~~~~----g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al 595 (713)
+|..- .+...|..++.++.+..+ +.+...++..+..- ++++.+...+....
T Consensus 369 ~y~~G~gv~r~~~~A~~~~k~aA~~g~------------------------~~A~~~~~~~~~~g~~~~~~~~~~~~~~a 424 (552)
T KOG1550|consen 369 CYELGLGVERNLELAFAYYKKAAEKGN------------------------PSAAYLLGAFYEYGVGRYDTALALYLYLA 424 (552)
T ss_pred HHHhCCCcCCCHHHHHHHHHHHHHccC------------------------hhhHHHHHHHHHHccccccHHHHHHHHHH
Confidence 87643 478999999999988752 44444455444432 67777766665554
Q ss_pred hcCCCChh---HHH-HHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---cCCChHHHHHHHHHH
Q 035707 596 AINPYSAS---GWH-STGLLYEA----KGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQI---GGESMATIRCFLTDA 664 (713)
Q Consensus 596 ~~~p~~~~---~~~-~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~l~~A~~~~~~a 664 (713)
+..-..+. ++. ........ ..+...+...+.++.. ..+..+...+|.+|..- ++ +.+.|...|.++
T Consensus 425 ~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~-d~~~a~~~y~~a 501 (552)
T KOG1550|consen 425 ELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGR-DPEKAAAQYARA 501 (552)
T ss_pred HhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCC-ChHHHHHHHHHH
Confidence 44322211 111 11111111 1245566666666543 45677888899888765 22 234888888888
Q ss_pred HhhCCCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHccccCC
Q 035707 665 LRLDRTNTTAWYNLGLLYKT-YAGASALEAVECFEAAALLEESA 707 (713)
Q Consensus 665 l~~~p~~~~~~~~lg~~~~~-~g~~~~~~A~~~~~~a~~l~p~~ 707 (713)
.... +...+++|.++.. .|-..+..|.++|.++.+.+...
T Consensus 502 ~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~~ 542 (552)
T KOG1550|consen 502 SEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSRA 542 (552)
T ss_pred HHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCchh
Confidence 8766 8899999999876 23201478999999988866543
No 233
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.035 Score=61.70 Aligned_cols=330 Identities=14% Similarity=0.107 Sum_probs=194.5
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCC--CCchhhHH-HHHHHhhcccCCCChHHH---------HHHHHHHHhc
Q 035707 301 DPSIIDHLSFALSVSGELWTLAHQVEELLPGV--MGNKKRYC-TLALCYLGEENSDCNLEL---------LVASKICAEN 368 (713)
Q Consensus 301 ~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~--~~~~~~~~-~la~~~~~~~~p~~~~~~---------~~~a~~~~~~ 368 (713)
||+-......+++..+-..++++.+|+++-.. +......- .+.+.-.++ +|..+..+ -..|.++...
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~~ia~iai~~ 1061 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAPDIAEIAIEN 1061 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCchhHHHHHhhh
Confidence 66666666778888888889999999975332 22222111 122222221 11111111 1134455555
Q ss_pred CCChHHHHHHHHHH------HH-------hhhccCc----chHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHH
Q 035707 369 KVCIEEGITYARKA------LS-------MLQGKCR----QMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALET 431 (713)
Q Consensus 369 g~~~~~A~~~~~~a------l~-------~~~~~~~----~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 431 (713)
+-++ +|..+|++- ++ .++.... -..+..|..+|.+. .+.|...+|++.|-+
T Consensus 1062 ~LyE-EAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQ-----------L~~~~v~dAieSyik 1129 (1666)
T KOG0985|consen 1062 QLYE-EAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQ-----------LQGGLVKDAIESYIK 1129 (1666)
T ss_pred hHHH-HHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHH-----------HhcCchHHHHHHHHh
Confidence 5555 666555431 11 0110000 01148899999999 777888999999876
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc
Q 035707 432 AEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQ 511 (713)
Q Consensus 432 al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 511 (713)
+ ++|..+........+.|+|++-++++.-+-+..... ..-..+..+|.+.++..+-++.+. .| +.
T Consensus 1130 a------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~--~id~eLi~AyAkt~rl~elE~fi~-----gp--N~ 1194 (1666)
T KOG0985|consen 1130 A------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP--YIDSELIFAYAKTNRLTELEEFIA-----GP--NV 1194 (1666)
T ss_pred c------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc--cchHHHHHHHHHhchHHHHHHHhc-----CC--Cc
Confidence 5 477888899999999999999999988776654332 333445556666777666544331 22 22
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHH
Q 035707 512 GELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCL 591 (713)
Q Consensus 512 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 591 (713)
.-....|.-+...|.|+.|.-.|.. ..-|..|+..+..+|+|+.|...-
T Consensus 1195 -A~i~~vGdrcf~~~~y~aAkl~y~~------------------------------vSN~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1195 -ANIQQVGDRCFEEKMYEAAKLLYSN------------------------------VSNFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred -hhHHHHhHHHhhhhhhHHHHHHHHH------------------------------hhhHHHHHHHHHHHHHHHHHHHHh
Confidence 2233455656666666666555443 334455555556666666666655
Q ss_pred HHHHhcC---------------------C----CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 035707 592 SKSKAIN---------------------P----YSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVL 646 (713)
Q Consensus 592 ~~al~~~---------------------p----~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~ 646 (713)
+++-... . -+++-+-.+...|...|-+++-+..++.++.+...+.-.+..+|.+|
T Consensus 1244 RKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLY 1323 (1666)
T KOG0985|consen 1244 RKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILY 1323 (1666)
T ss_pred hhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Confidence 5543211 0 02334556777888999999999999999998888888888888888
Q ss_pred HHhcCCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 035707 647 RQIGGESMATIRCFLTDALRL--------DRTNTTAWYNLGLLYKTYAGASALEAV 694 (713)
Q Consensus 647 ~~~g~~~l~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~~~A~ 694 (713)
.+-.- ++-.++++-.... ..+....|..+--+|.+-.. |+.|.
T Consensus 1324 skykp---~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~e--yDNAa 1374 (1666)
T KOG0985|consen 1324 SKYKP---EKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEE--YDNAA 1374 (1666)
T ss_pred HhcCH---HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhh--hhHHH
Confidence 76432 1444443322111 01223456666666666666 66554
No 234
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.73 E-value=0.022 Score=59.54 Aligned_cols=137 Identities=20% Similarity=0.281 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCC--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhh-hh-----
Q 035707 477 KGYLLLARVLSAQKQFADAESVINDSLDQTGKWD--QGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRK-KS----- 548 (713)
Q Consensus 477 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~-~~----- 548 (713)
..|...+.+..+.|+++-|...+.++....+... .+.+....+.+....|+..+|+..++..+....... ..
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~ 226 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAE 226 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHH
Confidence 7899999999999999999999999988653211 467788899999999999999999999988322211 00
Q ss_pred hhhhh----hhhh--hcccCCCccHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 035707 549 FSAGK----NLVK--NRQNHDRSLEMETWHDLANVYTSL------SQWRDAEVCLSKSKAINPYSASGWHSTGLLYE 613 (713)
Q Consensus 549 ~~~~~----~~~~--~~~~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 613 (713)
...+. .... ............++..+|...... +..+++...|.++++..|....+|+.+|..+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 227 LKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFND 303 (352)
T ss_pred HhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 00000 0000 000111122244555555555555 55566666666666666655555555555443
No 235
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.72 E-value=0.13 Score=57.06 Aligned_cols=305 Identities=16% Similarity=0.020 Sum_probs=185.0
Q ss_pred CCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHH
Q 035707 352 SDCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALET 431 (713)
Q Consensus 352 p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 431 (713)
|.-.+.+...+.-+...|... +|+...-.+- + +.+.+...-..|.-....+ + +..+..
T Consensus 344 ~~~~~lH~~Aa~w~~~~g~~~-eAI~hAlaA~---d---~~~aa~lle~~~~~L~~~~-----------~----lsll~~ 401 (894)
T COG2909 344 ARLKELHRAAAEWFAEHGLPS-EAIDHALAAG---D---PEMAADLLEQLEWQLFNGS-----------E----LSLLLA 401 (894)
T ss_pred CchhHHHHHHHHHHHhCCChH-HHHHHHHhCC---C---HHHHHHHHHhhhhhhhccc-----------c----hHHHHH
Confidence 334666777777778888888 9988764432 2 2222233333333332221 1 223333
Q ss_pred HHHhhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC--Cc------hHHHHHHHHHHHHcCCHHHHHHH
Q 035707 432 AEKTMRE-----RDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEAR--SN------VKGYLLLARVLSAQKQFADAESV 498 (713)
Q Consensus 432 al~~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~~------~~~~~~la~~~~~~g~~~~A~~~ 498 (713)
.+ +.-| .+|......+.....+.++++|.....++...-+. .. ....-..|.+....|++++|++.
T Consensus 402 ~~-~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~l 480 (894)
T COG2909 402 WL-KALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDL 480 (894)
T ss_pred HH-HhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 33 2223 35667778888899999999999999888764433 11 02334567788899999999999
Q ss_pred HHHHhhccCCC---CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHH
Q 035707 499 INDSLDQTGKW---DQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLA 575 (713)
Q Consensus 499 ~~~al~~~p~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 575 (713)
.+.++..-|.. ....++...+.+..-.|++++|..+..++.+..... ........+....+
T Consensus 481 ar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~----------------~~~~l~~~~~~~~s 544 (894)
T COG2909 481 ARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH----------------DVYHLALWSLLQQS 544 (894)
T ss_pred HHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc----------------ccHHHHHHHHHHHH
Confidence 99999886531 134567788999999999999999999998875432 11223345555667
Q ss_pred HHHHHCCCH--HHHHHHHHHHH----hcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCCHH---HHHHH
Q 035707 576 NVYTSLSQW--RDAEVCLSKSK----AINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAE----PNHVP---SLVSI 642 (713)
Q Consensus 576 ~~~~~~g~~--~~A~~~~~~al----~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~----p~~~~---~~~~l 642 (713)
.++..+|+. .+....+...- ...|-+.......+.++...-+++.+.......++.. |.... +++.+
T Consensus 545 ~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~L 624 (894)
T COG2909 545 EILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSML 624 (894)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHH
Confidence 888888843 33333333322 2233333333333444433334666666666555432 32221 23478
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhhCCCC-H----HHHHHH--HHHHHHhCCCCHHHHHHHHHH
Q 035707 643 ARVLRQIGGESMATIRCFLTDALRLDRTN-T----TAWYNL--GLLYKTYAGASALEAVECFEA 699 (713)
Q Consensus 643 a~~~~~~g~~~l~~A~~~~~~al~~~p~~-~----~~~~~l--g~~~~~~g~~~~~~A~~~~~~ 699 (713)
+.+....|+.+ +|...+.+...+..+. + .+...+ .......|+ ..+|..+..+
T Consensus 625 A~l~~~~Gdl~--~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~--~~~a~~~l~~ 684 (894)
T COG2909 625 AELEFLRGDLD--KALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGD--KELAAEWLLK 684 (894)
T ss_pred HHHHHhcCCHH--HHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCC--HHHHHHHHHh
Confidence 99999999987 9998888876653222 1 111122 222335788 8888877776
No 236
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.66 E-value=0.015 Score=59.29 Aligned_cols=179 Identities=13% Similarity=0.063 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHH
Q 035707 395 SIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTM----RERDPYIIYHLCLENAE---QRKLDVALYYAKKL 467 (713)
Q Consensus 395 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~~ 467 (713)
+.....+=.+| ....+|+.-+++.+..- .+ -++.+.+.+..|.++.+ .|+.++|+..+..+
T Consensus 141 ~div~~lllSy-----------RdiqdydamI~Lve~l~-~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~ 208 (374)
T PF13281_consen 141 PDIVINLLLSY-----------RDIQDYDAMIKLVETLE-ALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPV 208 (374)
T ss_pred hhHHHHHHHHh-----------hhhhhHHHHHHHHHHhh-ccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHH
Confidence 35555555667 67788888888888766 55 34567778889999998 99999999999995
Q ss_pred Hhh-hcCCchHHHHHHHHHHHHc---------CCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 035707 468 LNL-EARSNVKGYLLLARVLSAQ---------KQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVN 537 (713)
Q Consensus 468 l~~-~p~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 537 (713)
+.. .+.++ +++..+|.+|... ...++|+.+|.++.+..| +...-.+++.++...|...+.....++
T Consensus 209 l~~~~~~~~-d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~---~~Y~GIN~AtLL~~~g~~~~~~~el~~ 284 (374)
T PF13281_consen 209 LESDENPDP-DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP---DYYSGINAATLLMLAGHDFETSEELRK 284 (374)
T ss_pred HhccCCCCh-HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc---cccchHHHHHHHHHcCCcccchHHHHH
Confidence 554 45555 8999999987543 357889999999999986 333445666677777764444333333
Q ss_pred HH-HHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Q 035707 538 LL-AVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPY 600 (713)
Q Consensus 538 ~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 600 (713)
.. .+.. +...........+....-.++.+..-.|++++|...++++++..|.
T Consensus 285 i~~~l~~-----------llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 285 IGVKLSS-----------LLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred HHHHHHH-----------HHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 22 1110 0000011222233444555666666677777777777777766553
No 237
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.63 E-value=0.082 Score=59.40 Aligned_cols=297 Identities=15% Similarity=0.085 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCC--CH----HHHHHH
Q 035707 374 EGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRER--DP----YIIYHL 447 (713)
Q Consensus 374 ~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~--~~----~~~~~l 447 (713)
.|+.+++-+++ ..+-.+...+.+++.+|.++. ....+++.|..++++++ .+... .. ...+.+
T Consensus 39 ~ai~CL~~~~~-~~~l~p~~ea~~~l~la~iL~----------~eT~n~~~Ae~~L~k~~-~l~~~~~~~d~k~~~~~ll 106 (608)
T PF10345_consen 39 TAIKCLEAVLK-QFKLSPRQEARVRLRLASILL----------EETENLDLAETYLEKAI-LLCERHRLTDLKFRCQFLL 106 (608)
T ss_pred HHHHHHHHHhc-cCCCCHHHHHHHHHHHHHHHH----------HHcCCHHHHHHHHHHHH-HhccccchHHHHHHHHHHH
Confidence 78888888886 344455567889999999995 67889999999999998 76643 22 234567
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHH----HH-HHHHHHcCCHHHHHHHHHHHhhccCCCCcHH----HHHHH
Q 035707 448 CLENAEQRKLDVALYYAKKLLNLEARSNVKGYL----LL-ARVLSAQKQFADAESVINDSLDQTGKWDQGE----LLRTK 518 (713)
Q Consensus 448 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~----~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----~~~~l 518 (713)
+.++.+.+... |....++.++.........|. .+ ...+...+++..|.+.++..........+.. +....
T Consensus 107 ~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~ 185 (608)
T PF10345_consen 107 ARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSE 185 (608)
T ss_pred HHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Confidence 78888877777 999999998865542212222 22 2233334799999999999887752112322 33444
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHH--HHHCCCHHHHHHHHHHHHh
Q 035707 519 AKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANV--YTSLSQWRDAEVCLSKSKA 596 (713)
Q Consensus 519 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~ 596 (713)
+.+....+.++++++..+++....... + + .....+....+|..+-.+ +...|+++.+...+++.-.
T Consensus 186 ~~l~l~~~~~~d~~~~l~~~~~~~~~~-q-~----------~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 186 ALLHLRRGSPDDVLELLQRAIAQARSL-Q-L----------DPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHhcCCCchhHHHHHHHHHHHHhhc-c-c----------CCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 667777888999999999886653211 0 0 011134445566666544 4567887777776655421
Q ss_pred ------cCC---C---C-----------------h-------------hHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--
Q 035707 597 ------INP---Y---S-----------------A-------------SGWHSTGLLYEAKGLQQEALVSFRKALDAE-- 632 (713)
Q Consensus 597 ------~~p---~---~-----------------~-------------~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-- 632 (713)
..+ . + + -++..-|......+..++|.++++++++.-
T Consensus 254 ~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~ 333 (608)
T PF10345_consen 254 FLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEK 333 (608)
T ss_pred HHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHH
Confidence 111 0 0 0 123444556666777778888888877531
Q ss_pred -----CC---C----------------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhC---CC------CHHHHHHHH
Q 035707 633 -----PN---H----------------VPSLVSIARVLRQIGGESMATIRCFLTDALRLD---RT------NTTAWYNLG 679 (713)
Q Consensus 633 -----p~---~----------------~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~---p~------~~~~~~~lg 679 (713)
+. . ......++....-.+++. .|...++.+.... |. .+..++..|
T Consensus 334 ~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~--~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~g 411 (608)
T PF10345_consen 334 LKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWS--KATQELEFMRQLCQRSPSKLYESLYPLLHYLLG 411 (608)
T ss_pred hhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHH--HHHHHHHHHHHHHhcCccchhhhhhHHHHHHHH
Confidence 11 0 012345566677778876 7888777666542 22 367788899
Q ss_pred HHHHHhCCCCHHHHHHHHHH
Q 035707 680 LLYKTYAGASALEAVECFEA 699 (713)
Q Consensus 680 ~~~~~~g~~~~~~A~~~~~~ 699 (713)
..+...|+ .+.|...|.+
T Consensus 412 l~~q~~g~--l~~A~~~y~~ 429 (608)
T PF10345_consen 412 LYYQSTGD--LEAALYQYQK 429 (608)
T ss_pred HHHHHcCC--HHHHHHHHhh
Confidence 99999999 9999999983
No 238
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.62 E-value=0.055 Score=56.48 Aligned_cols=142 Identities=23% Similarity=0.299 Sum_probs=107.4
Q ss_pred ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC----CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C-C----
Q 035707 565 SLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINP----YSASGWHSTGLLYEAKGLQQEALVSFRKALDAE-P-N---- 634 (713)
Q Consensus 565 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-p-~---- 634 (713)
......|...+.+..+.|+++.|...+.++...++ ..+.+.+..+.+....|+..+|+..++..+... . .
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 45578999999999999999999999999987652 246788888999999999999999998888711 0 0
Q ss_pred ---------------------C-------HHHHHHHHHHHHHh----cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 035707 635 ---------------------H-------VPSLVSIARVLRQI----GGESMATIRCFLTDALRLDRTNTTAWYNLGLLY 682 (713)
Q Consensus 635 ---------------------~-------~~~~~~la~~~~~~----g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~ 682 (713)
. ..++..+|...... +....+++...|.++++.+|+...+|+.+|..+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 0 12444555555555 223334899999999999999999999999887
Q ss_pred HHhCCC---------------CHHHHHHHHHHHHccccC
Q 035707 683 KTYAGA---------------SALEAVECFEAAALLEES 706 (713)
Q Consensus 683 ~~~g~~---------------~~~~A~~~~~~a~~l~p~ 706 (713)
...=.. -...|+.+|-+++.+.++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 303 DKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 654220 023588999999988776
No 239
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.61 E-value=0.12 Score=58.06 Aligned_cols=317 Identities=15% Similarity=0.052 Sum_probs=191.0
Q ss_pred ChHHHHHHHHHHH-hcCCChHHHHHHHHHHHHhhhc-cCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHH
Q 035707 354 CNLELLVASKICA-ENKVCIEEGITYARKALSMLQG-KCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALET 431 (713)
Q Consensus 354 ~~~~~~~~a~~~~-~~g~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 431 (713)
.....+.+|.+++ +..+++ +|..++.+++..... +-...+..+.+.++.++ .+.+... |+..+++
T Consensus 58 ea~~~l~la~iL~~eT~n~~-~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~-----------~~~~~~~-a~~~l~~ 124 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLD-LAETYLEKAILLCERHRLTDLKFRCQFLLARIY-----------FKTNPKA-ALKNLDK 124 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhccccchHHHHHHHHHHHHHHH-----------HhcCHHH-HHHHHHH
Confidence 4677888898888 566777 999999999884333 22334567778888888 5555555 9999998
Q ss_pred HHHhhCCC---CHHHH-HHH--HHHHHHcCCHHHHHHHHHHHHhhh--cCCchH----HHHHHHHHHHHcCCHHHHHHHH
Q 035707 432 AEKTMRER---DPYII-YHL--CLENAEQRKLDVALYYAKKLLNLE--ARSNVK----GYLLLARVLSAQKQFADAESVI 499 (713)
Q Consensus 432 al~~~~p~---~~~~~-~~l--a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~----~~~~la~~~~~~g~~~~A~~~~ 499 (713)
.+ ..... ....| +.+ ...+...+++..|++.++...... ++++ . +....+.++...+..+++++.+
T Consensus 125 ~I-~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~-~~~v~~~l~~~~l~l~~~~~~d~~~~l 202 (608)
T PF10345_consen 125 AI-EDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDP-AVFVLASLSEALLHLRRGSPDDVLELL 202 (608)
T ss_pred HH-HHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCH-HHHHHHHHHHHHHHhcCCCchhHHHHH
Confidence 88 55433 22222 222 223333489999999999998765 2333 2 2233466677778888888888
Q ss_pred HHHhhcc------CC--CCcHHHHHHHHH--HHHHhCCHHHHHHHHHHHHHHHhhhhhh--hhh---hhhhhhh------
Q 035707 500 NDSLDQT------GK--WDQGELLRTKAK--LQIAQGRLKNAIETYVNLLAVLQFRKKS--FSA---GKNLVKN------ 558 (713)
Q Consensus 500 ~~al~~~------p~--~~~~~~~~~la~--~~~~~g~~~~A~~~~~~~l~~~~~~~~~--~~~---~~~~~~~------ 558 (713)
+++.... +. .....++..+-. ++...|+++.+...++++-......... |.. ...+.-.
T Consensus 203 ~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~ 282 (608)
T PF10345_consen 203 QRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSS 282 (608)
T ss_pred HHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccc
Confidence 8774432 11 123444544443 4566788778877776665443322222 111 1111000
Q ss_pred ---------cccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CCCh-------------------h
Q 035707 559 ---------RQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAIN-------PYSA-------------------S 603 (713)
Q Consensus 559 ---------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~-------------------~ 603 (713)
...+......-++..-|......+..+.|.++++++++.- +..+ .
T Consensus 283 ~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~ 362 (608)
T PF10345_consen 283 NSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCY 362 (608)
T ss_pred cCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHH
Confidence 0000001112333444555666777778888888776421 1110 1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CC------CHHHHHHHHHHHHHhcCCChHHHHHHHH--------HHHh
Q 035707 604 GWHSTGLLYEAKGLQQEALVSFRKALDAE---PN------HVPSLVSIARVLRQIGGESMATIRCFLT--------DALR 666 (713)
Q Consensus 604 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~---p~------~~~~~~~la~~~~~~g~~~l~~A~~~~~--------~al~ 666 (713)
....++.+....+++.+|....+.+.... |. .+..++..|..+...|+.+ .|...|. .+..
T Consensus 363 ~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~--~A~~~y~~~~~~~~~~~~~ 440 (608)
T PF10345_consen 363 LLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLE--AALYQYQKPRFLLCEAANR 440 (608)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHH--HHHHHHhhhHHhhhhhhcc
Confidence 23456667778899999999888777542 22 3566778888888889886 9999998 3334
Q ss_pred hCCCCH---HHHHHHHHHHHHhCC
Q 035707 667 LDRTNT---TAWYNLGLLYKTYAG 687 (713)
Q Consensus 667 ~~p~~~---~~~~~lg~~~~~~g~ 687 (713)
..+.+. -+..++..++...+.
T Consensus 441 ~~~~~El~ila~LNl~~I~~~~~~ 464 (608)
T PF10345_consen 441 KSKFRELYILAALNLAIILQYESS 464 (608)
T ss_pred CCcchHHHHHHHHHHHHHhHhhcc
Confidence 444332 234567777777666
No 240
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.61 E-value=5.5e-05 Score=47.82 Aligned_cols=32 Identities=28% Similarity=0.450 Sum_probs=19.6
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHcCCHHHHH
Q 035707 591 LSKSKAINPYSASGWHSTGLLYEAKGLQQEAL 622 (713)
Q Consensus 591 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~ 622 (713)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45566666666666666666666666666554
No 241
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.59 E-value=9.7e-05 Score=46.97 Aligned_cols=34 Identities=32% Similarity=0.462 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCC
Q 035707 672 TTAWYNLGLLYKTYAGASALEAVECFEAAALLEESA 707 (713)
Q Consensus 672 ~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~ 707 (713)
+.+|+++|.+|..+|+ +++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~--~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGD--YEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT---HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCC--chHHHHHHHHHHHHCcCC
Confidence 4678999999999999 999999999999999874
No 242
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.58 E-value=0.00014 Score=46.27 Aligned_cols=34 Identities=38% Similarity=0.594 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCC
Q 035707 672 TTAWYNLGLLYKTYAGASALEAVECFEAAALLEESA 707 (713)
Q Consensus 672 ~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~ 707 (713)
+.+|+.+|.++...|+ +++|+++|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~--~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGN--YEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT---HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHCcCC
Confidence 4678999999999999 999999999999999875
No 243
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.00051 Score=63.41 Aligned_cols=105 Identities=16% Similarity=0.139 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCh----------hHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 035707 568 METWHDLANVYTSLSQWRDAEVCLSKSKAI--------NPYSA----------SGWHSTGLLYEAKGLQQEALVSFRKAL 629 (713)
Q Consensus 568 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~----------~~~~~lg~~~~~~g~~~eA~~~~~~al 629 (713)
..++..-|+-++..|+|.+|...|+.++.. .|.++ ..+.+.+.++...|+|-++++.....+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 788899999999999999999999998642 34433 457788888888999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHH
Q 035707 630 DAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTA 674 (713)
Q Consensus 630 ~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~ 674 (713)
..+|.++.+++..|.+....=+.+ +|..-|.++++++|.-..+
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~--eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEA--EAKADLQKVLELDPSLASV 300 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHH--HHHHHHHHHHhcChhhHHH
Confidence 999999999999888887766655 8999999999998865443
No 244
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.49 E-value=0.018 Score=58.59 Aligned_cols=174 Identities=15% Similarity=0.014 Sum_probs=122.8
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHH---CCCHHHH
Q 035707 511 QGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTS---LSQWRDA 587 (713)
Q Consensus 511 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A 587 (713)
.+.+...+-..|....+|+.-++..+.+-.. |. ...+....+...+|.++.+ .|+.++|
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~-p~-----------------~~~~~~~~i~~~yafALnRrn~~gdre~A 201 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEAL-PT-----------------CDVANQHNIKFQYAFALNRRNKPGDREKA 201 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc-Cc-----------------cchhcchHHHHHHHHHHhhcccCCCHHHH
Confidence 3445556666788888888888887776554 11 1123346777888888888 9999999
Q ss_pred HHHHHH-HHhcCCCChhHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHH
Q 035707 588 EVCLSK-SKAINPYSASGWHSTGLLYEAK---------GLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATI 657 (713)
Q Consensus 588 ~~~~~~-al~~~p~~~~~~~~lg~~~~~~---------g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A 657 (713)
+..+.. .....+.+++++..+|.+|... ...++|+.+|.++.+++|+. ..-.|++.++...|... +.
T Consensus 202 l~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~--~~ 278 (374)
T PF13281_consen 202 LQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDF--ET 278 (374)
T ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcc--cc
Confidence 999999 5555677899999999998532 24789999999999999654 44556677777777643 22
Q ss_pred HHHHHHHH--------hh----CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCC
Q 035707 658 RCFLTDAL--------RL----DRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALLEESA 707 (713)
Q Consensus 658 ~~~~~~al--------~~----~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~ 707 (713)
..-+++.. +. .-++....-.++.+..-.|+ +++|..++++++.+.|..
T Consensus 279 ~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d--~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 279 SEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGD--YEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred hHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCC--HHHHHHHHHHHhhcCCcc
Confidence 21112111 11 11233445568888889999 999999999999987754
No 245
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.018 Score=55.66 Aligned_cols=65 Identities=18% Similarity=0.128 Sum_probs=54.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 035707 438 ERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSL 503 (713)
Q Consensus 438 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 503 (713)
|...+.-+..+......|++.+|...|..++...|++. .+...++.++...|+.+.|..++...-
T Consensus 131 ~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~-~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 131 PAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENS-EAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred ChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccc-hHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 44445566677778889999999999999999999988 899999999999999999988887753
No 246
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.032 Score=52.54 Aligned_cols=221 Identities=12% Similarity=0.109 Sum_probs=154.1
Q ss_pred HhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHc-CCHHHHHH
Q 035707 419 ILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQ-KQFADAES 497 (713)
Q Consensus 419 ~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~-g~~~~A~~ 497 (713)
..++.++..+|+..+ ..+ ..-..|+..-+.++.++|.+- .+|...-.++..+ .+..+-++
T Consensus 39 te~fr~~m~YfRAI~-~~~-----------------E~S~RAl~LT~d~i~lNpAnY-TVW~yRr~iL~~l~~dL~~El~ 99 (318)
T KOG0530|consen 39 TEDFRDVMDYFRAII-AKN-----------------EKSPRALQLTEDAIRLNPANY-TVWQYRRVILRHLMSDLNKELE 99 (318)
T ss_pred chhHHHHHHHHHHHH-hcc-----------------ccCHHHHHHHHHHHHhCcccc-hHHHHHHHHHHHhHHHHHHHHH
Confidence 345566667666555 333 344567777888888899888 7887666666554 46777788
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHH
Q 035707 498 VINDSLDQTGKWDQGELLRTKAKLQIAQGRLK-NAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLAN 576 (713)
Q Consensus 498 ~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 576 (713)
+++.+++.+| .+..+|...-.+....|++. .-++..+.++..+..+ ..+|...-+
T Consensus 100 ~l~eI~e~np--KNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKN----------------------YHaWshRqW 155 (318)
T KOG0530|consen 100 YLDEIIEDNP--KNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKN----------------------YHAWSHRQW 155 (318)
T ss_pred HHHHHHHhCc--cchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccc----------------------hhhhHHHHH
Confidence 8889888888 66777777777777788877 7777888887765433 778888888
Q ss_pred HHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH-cC-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-h
Q 035707 577 VYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEA-KG-----LQQEALVSFRKALDAEPNHVPSLVSIARVLRQ-I 649 (713)
Q Consensus 577 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g-----~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~-~ 649 (713)
+....+.|++-+.+..++++.+-.+-.+|+..-.+... .| ..+.-+.+..+.+.+.|++..+|+.|.-++.. .
T Consensus 156 ~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~ 235 (318)
T KOG0530|consen 156 VLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDS 235 (318)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcc
Confidence 88888889999999999998887777777654322222 12 23445667778888899999999999888875 5
Q ss_pred cCCChHHHHHHHHHHH-hhCCCCHHHHHHHHHHH
Q 035707 650 GGESMATIRCFLTDAL-RLDRTNTTAWYNLGLLY 682 (713)
Q Consensus 650 g~~~l~~A~~~~~~al-~~~p~~~~~~~~lg~~~ 682 (713)
|-...++...+..... +....+|..+-.+..+|
T Consensus 236 gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~ 269 (318)
T KOG0530|consen 236 GLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLY 269 (318)
T ss_pred CCcCCchHHHHHHHHhhccCCCChhHHHHHHHHH
Confidence 5111125555555554 33445666666666666
No 247
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.0025 Score=59.07 Aligned_cols=123 Identities=12% Similarity=0.080 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHH
Q 035707 512 GELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCL 591 (713)
Q Consensus 512 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 591 (713)
..++...|+-++..|+|.+|...|+.++....+-.-- ..................+.+...++...|+|-++++..
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lk----EkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~ 253 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLK----EKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHC 253 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhc----cCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHH
Confidence 3455666666677777777777777666542211000 000000000001122556788999999999999999999
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 035707 592 SKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPS 638 (713)
Q Consensus 592 ~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 638 (713)
...+...|.+..+++..|..+...=+.++|...|.++++++|.-..+
T Consensus 254 seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 254 SEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 99999999999999999999999999999999999999999976543
No 248
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.36 E-value=0.00031 Score=44.57 Aligned_cols=31 Identities=29% Similarity=0.479 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 035707 604 GWHSTGLLYEAKGLQQEALVSFRKALDAEPN 634 (713)
Q Consensus 604 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 634 (713)
+|+.+|.++..+|++++|+..|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 3444444444444444444444444444443
No 249
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.35 E-value=0.011 Score=63.55 Aligned_cols=163 Identities=16% Similarity=0.141 Sum_probs=116.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhhcCCchH-H-----HHHHHHHHH----HcCCHHHHHHHHHHHhhccCCCCcHHHHHHH
Q 035707 449 LENAEQRKLDVALYYAKKLLNLEARSNVK-G-----YLLLARVLS----AQKQFADAESVINDSLDQTGKWDQGELLRTK 518 (713)
Q Consensus 449 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~-----~~~la~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 518 (713)
...--.||-+.++..+.++.+...-.... . |+....... .....+.|.++++......| +....++..
T Consensus 196 ~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP--~s~lfl~~~ 273 (468)
T PF10300_consen 196 SFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYP--NSALFLFFE 273 (468)
T ss_pred hhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCC--CcHHHHHHH
Confidence 33344578888888888876622111101 1 111111111 24567889999999999999 678888899
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Q 035707 519 AKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAIN 598 (713)
Q Consensus 519 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 598 (713)
|+++...|+.++|++.|++++.....- .....-.++.+++++..+.+|++|..++.+..+.+
T Consensus 274 gR~~~~~g~~~~Ai~~~~~a~~~q~~~------------------~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s 335 (468)
T PF10300_consen 274 GRLERLKGNLEEAIESFERAIESQSEW------------------KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES 335 (468)
T ss_pred HHHHHHhcCHHHHHHHHHHhccchhhH------------------HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence 999999999999999999887532211 12335678899999999999999999999999877
Q ss_pred CCChh-HHHHHHHHHHHcCCH-------HHHHHHHHHHHhc
Q 035707 599 PYSAS-GWHSTGLLYEAKGLQ-------QEALVSFRKALDA 631 (713)
Q Consensus 599 p~~~~-~~~~lg~~~~~~g~~-------~eA~~~~~~al~~ 631 (713)
.-+.. ..+..|.++...|+. ++|.+.|.++-..
T Consensus 336 ~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 336 KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 65433 445678888888988 8888888887653
No 250
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.092 Score=49.60 Aligned_cols=204 Identities=10% Similarity=0.027 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHH-HHHHHHH
Q 035707 423 SQALVALETAEKTMRERDPYIIYHLCLENAEQ-RKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFA-DAESVIN 500 (713)
Q Consensus 423 ~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~-~A~~~~~ 500 (713)
..|+..-+.++ .++|.+-.+|...-.++... .+..+-++++.+++..+|.+- .+|...-.+....|++. .-++..+
T Consensus 60 ~RAl~LT~d~i-~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNY-QvWHHRr~ive~l~d~s~rELef~~ 137 (318)
T KOG0530|consen 60 PRALQLTEDAI-RLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNY-QVWHHRRVIVELLGDPSFRELEFTK 137 (318)
T ss_pred HHHHHHHHHHH-HhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccch-hHHHHHHHHHHHhcCcccchHHHHH
Confidence 45666667777 89999888887666665544 467888899999999999998 99999888888899888 7888899
Q ss_pred HHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHH
Q 035707 501 DSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTS 580 (713)
Q Consensus 501 ~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 580 (713)
.++..+. .+..+|...-.+....+.++.-+.+..++++.+-.+..+|...-.+.... .| ...
T Consensus 138 ~~l~~Da--KNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~--------------~~--~~~ 199 (318)
T KOG0530|consen 138 LMLDDDA--KNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNT--------------KG--VIS 199 (318)
T ss_pred HHHhccc--cchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEec--------------cC--Ccc
Confidence 9998877 56778888888888888899999999999988765533332211111100 00 000
Q ss_pred CCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH-cC--CHHHHHHHHHHHH-hcCCCCHHHHHHHHHHH
Q 035707 581 LSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEA-KG--LQQEALVSFRKAL-DAEPNHVPSLVSIARVL 646 (713)
Q Consensus 581 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g--~~~eA~~~~~~al-~~~p~~~~~~~~la~~~ 646 (713)
.-..+.-+.+..+.+.+.|++..+|+.|.-++.. .| .+.+-........ +....++..+-.+..+|
T Consensus 200 ~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~ 269 (318)
T KOG0530|consen 200 KAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLY 269 (318)
T ss_pred HHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHH
Confidence 0112344566677888999999999998888775 44 2334444444443 33345566666666666
No 251
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.32 E-value=0.00049 Score=70.29 Aligned_cols=109 Identities=17% Similarity=0.070 Sum_probs=99.4
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 035707 572 HDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGG 651 (713)
Q Consensus 572 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 651 (713)
-.-+...+..+.++.|+..|.++++++|+.+..+.+.+..+.+.+++..|+.-+.++++.+|....+++..|.+....++
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 34566777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 035707 652 ESMATIRCFLTDALRLDRTNTTAWYNLGLLY 682 (713)
Q Consensus 652 ~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~ 682 (713)
+- +|...|++...+.|+++.+...+-.+-
T Consensus 88 ~~--~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 88 FK--KALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HH--HHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 97 999999999999999998877666554
No 252
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.29 E-value=0.00056 Score=43.36 Aligned_cols=31 Identities=39% Similarity=0.614 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 035707 604 GWHSTGLLYEAKGLQQEALVSFRKALDAEPN 634 (713)
Q Consensus 604 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 634 (713)
+|+.+|.++...|++++|+..|+++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 3444444444444444444444444444443
No 253
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.28 E-value=0.14 Score=62.58 Aligned_cols=326 Identities=15% Similarity=0.095 Sum_probs=187.0
Q ss_pred cCCCChHHHH------HHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccH--------
Q 035707 350 ENSDCNLELL------VASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSD-------- 415 (713)
Q Consensus 350 ~~p~~~~~~~------~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~-------- 415 (713)
.++..++..+ .++.+-++.+.|. .|+-++++- . ..+.........+..+-.+|...++.+...
T Consensus 1372 ~~~~~v~~fL~~iP~~tLa~aSfrc~~y~-RalmylEs~-~-~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a 1448 (2382)
T KOG0890|consen 1372 EDIEGVQSFLDLIPSDTLARASFRCKAYA-RALMYLESH-R-STEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA 1448 (2382)
T ss_pred CchhhhHHHHhhccHHHHHHHHHhhHHHH-HHHHHHHHh-c-cccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc
Confidence 4444555555 6777888899999 999988884 1 122222223344455555776666554432
Q ss_pred ----------HHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHH-H
Q 035707 416 ----------SKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLA-R 484 (713)
Q Consensus 416 ----------~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la-~ 484 (713)
....|++..|..+|++++ +.+|+....+...-......|.+...+...+-.....++.. .-|+.++ .
T Consensus 1449 ~~sl~~qil~~e~~g~~~da~~Cye~~~-q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~-~~~~s~~~e 1526 (2382)
T KOG0890|consen 1449 DPSLYQQILEHEASGNWADAAACYERLI-QKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEV-DELNSLGVE 1526 (2382)
T ss_pred CccHHHHHHHHHhhccHHHHHHHHHHhh-cCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHH-HHHHHHHHH
Confidence 344588888888888888 88888777777666777777788877776666555444443 4444433 2
Q ss_pred HHHHcCCHHHHHHHHH-------------HHhhccCCCCcHHHHHHHHHHHHH----------hCCHHHHHHHHHHHHHH
Q 035707 485 VLSAQKQFADAESVIN-------------DSLDQTGKWDQGELLRTKAKLQIA----------QGRLKNAIETYVNLLAV 541 (713)
Q Consensus 485 ~~~~~g~~~~A~~~~~-------------~al~~~p~~~~~~~~~~la~~~~~----------~g~~~~A~~~~~~~l~~ 541 (713)
+....++++.-..... +.+-..+..+....+..+...... .|-+..+.+..-++...
T Consensus 1527 aaW~l~qwD~~e~~l~~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l 1606 (2382)
T KOG0890|consen 1527 AAWRLSQWDLLESYLSDRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLL 1606 (2382)
T ss_pred HHhhhcchhhhhhhhhcccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHH
Confidence 3355666665554432 000001110111111111111111 11222222222222111
Q ss_pred Hh-------------hhh-----hhhhhhhh-----------h-------hhh-cccCCCccHHHHHHHHHHHHHHCCCH
Q 035707 542 LQ-------------FRK-----KSFSAGKN-----------L-------VKN-RQNHDRSLEMETWHDLANVYTSLSQW 584 (713)
Q Consensus 542 ~~-------------~~~-----~~~~~~~~-----------~-------~~~-~~~~~~~~~~~~~~~la~~~~~~g~~ 584 (713)
.. +.. ..|..... + ... ..........+.|...|.+....|++
T Consensus 1607 ~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~ 1686 (2382)
T KOG0890|consen 1607 LELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHL 1686 (2382)
T ss_pred HHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccH
Confidence 00 000 00000000 0 000 11123445588899999999999999
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC----------C------HHHHHHHHHHHH
Q 035707 585 RDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAE-PN----------H------VPSLVSIARVLR 647 (713)
Q Consensus 585 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-p~----------~------~~~~~~la~~~~ 647 (713)
+.|...+-++.+.. -+.+....|..+...|+...|+..+++.+..+ |+ . ..+...++.-..
T Consensus 1687 q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~ 1764 (2382)
T KOG0890|consen 1687 QRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLE 1764 (2382)
T ss_pred HHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHH
Confidence 99988888887765 46788888999999999999999999988653 22 1 123444455556
Q ss_pred HhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 035707 648 QIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLY 682 (713)
Q Consensus 648 ~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~ 682 (713)
..++....+-+++|.++.++.|.....++.+|.-|
T Consensus 1765 es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1765 ESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYY 1799 (2382)
T ss_pred HhcchhHHHHHHHHHHHHHHcccccCceeeHHHHH
Confidence 66777666778889999999887666677777443
No 254
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.27 E-value=0.00023 Score=72.58 Aligned_cols=98 Identities=16% Similarity=0.073 Sum_probs=91.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q 035707 608 TGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAG 687 (713)
Q Consensus 608 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 687 (713)
-+.-....+.++.|+..|.++++++|+++..+.+.+.++.+.+++. .|+.-+.++++.+|....+|+..|.++...++
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~--~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFG--GALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhh--hHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 4455667789999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHccccCCCC
Q 035707 688 ASALEAVECFEAAALLEESAPV 709 (713)
Q Consensus 688 ~~~~~A~~~~~~a~~l~p~~~~ 709 (713)
+.+|...|++...+.|++|.
T Consensus 88 --~~~A~~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 88 --FKKALLDLEKVKKLAPNDPD 107 (476)
T ss_pred --HHHHHHHHHHhhhcCcCcHH
Confidence 99999999999999999874
No 255
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.25 E-value=0.0042 Score=55.41 Aligned_cols=63 Identities=19% Similarity=0.317 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 035707 568 METWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALD 630 (713)
Q Consensus 568 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 630 (713)
..+...++..+...|++++|+..+++++..+|.+..++..+..++...|+..+|+..|++..+
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 556777888888899999999999999999999999999999999999999999998887643
No 256
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.24 E-value=0.53 Score=52.52 Aligned_cols=247 Identities=17% Similarity=0.032 Sum_probs=154.7
Q ss_pred CChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccC----cchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHH
Q 035707 353 DCNLELLVASKICAENKVCIEEGITYARKALSMLQGKC----RQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVA 428 (713)
Q Consensus 353 ~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~----~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~ 428 (713)
+++...+..+-......++. +|..+..++.....+.+ ....+...-..|.+. ...|+.++|++.
T Consensus 413 ~~P~Lvll~aW~~~s~~r~~-ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~va-----------l~~~~~e~a~~l 480 (894)
T COG2909 413 STPRLVLLQAWLLASQHRLA-EAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVA-----------LNRGDPEEAEDL 480 (894)
T ss_pred hCchHHHHHHHHHHHccChH-HHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHH-----------HhcCCHHHHHHH
Confidence 35666677777788899999 99999998887443322 122334444455555 567888999999
Q ss_pred HHHHHHhhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCc-----hHHHHHHHHHHHHcCC--HHHHH
Q 035707 429 LETAEKTMRERD-----PYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSN-----VKGYLLLARVLSAQKQ--FADAE 496 (713)
Q Consensus 429 ~~~al~~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~~la~~~~~~g~--~~~A~ 496 (713)
.+.++ ..-|.+ ..+...+|.+..-.|++++|..+...+.+...... ..+....+.++..+|+ +.+..
T Consensus 481 ar~al-~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~ 559 (894)
T COG2909 481 ARLAL-VQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQE 559 (894)
T ss_pred HHHHH-HhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999 666554 34667889999999999999999999887643322 1233445778888893 33333
Q ss_pred HHHHHHhhcc--CCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccH-HHHHHH
Q 035707 497 SVINDSLDQT--GKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLE-METWHD 573 (713)
Q Consensus 497 ~~~~~al~~~--p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 573 (713)
..+...-... ..+.........+.++...-+++.+.......+...-.. ...+.. .-+.+.
T Consensus 560 ~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~----------------~~~~~~~~~~~~~ 623 (894)
T COG2909 560 KAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVY----------------TPQPLLSRLALSM 623 (894)
T ss_pred HHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhc----------------ccchhHHHHHHHH
Confidence 4443332221 111223344444444444444666666666665553211 111222 223358
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCC-h------hHHHHHHHHHHHcCCHHHHHHHHHHH
Q 035707 574 LANVYTSLSQWRDAEVCLSKSKAINPYS-A------SGWHSTGLLYEAKGLQQEALVSFRKA 628 (713)
Q Consensus 574 la~~~~~~g~~~~A~~~~~~al~~~p~~-~------~~~~~lg~~~~~~g~~~eA~~~~~~a 628 (713)
++.++...|+.++|...+.+........ + .+..........+|+..+|.....+.
T Consensus 624 LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 624 LAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 9999999999999999998877643222 1 11222233445678999988887774
No 257
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.21 E-value=0.29 Score=48.96 Aligned_cols=162 Identities=14% Similarity=-0.011 Sum_probs=107.3
Q ss_pred HHhcCCChHHHHHHHHHHHHhh---hccCcchHHHHHHHHHHHHhhcccccccHHHHHh-cHHHHHHHHHHHHHhh----
Q 035707 365 CAENKVCIEEGITYARKALSML---QGKCRQMASIANCLLGVLLSSQSRSVVSDSKRIL-KQSQALVALETAEKTM---- 436 (713)
Q Consensus 365 ~~~~g~~~~~A~~~~~~al~~~---~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~---- 436 (713)
...+|+++ .|..++.++-... +|......+..++..|... ...+ +++.|...++++. .+
T Consensus 3 A~~~~~~~-~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l-----------~~~~~~~~~a~~wL~~a~-~~l~~~ 69 (278)
T PF08631_consen 3 AWKQGDLD-LAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSL-----------LSKKDKYEEAVKWLQRAY-DILEKP 69 (278)
T ss_pred chhhCCHH-HHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHH-----------HHcCCChHHHHHHHHHHH-HHHHhh
Confidence 45788999 9999999987733 3444444566777777777 5666 8899999998888 66
Q ss_pred CC---CC-------HHHHHHHHHHHHHcCCHH---HHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 035707 437 RE---RD-------PYIIYHLCLENAEQRKLD---VALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSL 503 (713)
Q Consensus 437 ~p---~~-------~~~~~~la~~~~~~g~~~---~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 503 (713)
.+ .. ..++..++.+|...+.++ +|....+.+....|+.+ ..+...-.++...++.+++.+.+.+++
T Consensus 70 ~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~-~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 70 GKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKP-EVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred hhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCc-HHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 21 11 235677888998887765 45555555656667777 676666666667899999999999998
Q ss_pred hccCCC-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 035707 504 DQTGKW-DQGELLRTKAKLQIAQGRLKNAIETYVNLLAV 541 (713)
Q Consensus 504 ~~~p~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 541 (713)
...+.+ .+..........+.. .....+...+..++..
T Consensus 149 ~~~~~~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~ 186 (278)
T PF08631_consen 149 RSVDHSESNFDSILHHIKQLAE-KSPELAAFCLDYLLLN 186 (278)
T ss_pred HhcccccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHH
Confidence 875411 222222222222233 3445677777766654
No 258
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.21 E-value=0.11 Score=57.35 Aligned_cols=246 Identities=17% Similarity=0.090 Sum_probs=169.9
Q ss_pred cHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhh-----hcCCchHHHHHHHHHHHHcC
Q 035707 421 KQSQALVALETAEKTMRERDPYIIYHLCLENAEQ-----RKLDVALYYAKKLLNL-----EARSNVKGYLLLARVLSAQK 490 (713)
Q Consensus 421 ~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~~-----~p~~~~~~~~~la~~~~~~g 490 (713)
....|...++.+. . ..+..+.+.+|.+|..- .|.+.|+.+|+.+... .-..+ .+.+.+|.+|....
T Consensus 227 ~~~~a~~~~~~~a-~--~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~-~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 227 ELSEAFKYYREAA-K--LGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLP-PAQYGLGRLYLQGL 302 (552)
T ss_pred hhhHHHHHHHHHH-h--hcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCC-ccccHHHHHHhcCC
Confidence 4578889998877 3 45778888899888764 6899999999999761 11244 67888999998853
Q ss_pred -----CHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccC
Q 035707 491 -----QFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQG---RLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNH 562 (713)
Q Consensus 491 -----~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 562 (713)
++..|..+|.++-+.. ++...+.+|.++.... ++..|.++|..+....
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g----~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G-------------------- 358 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELG----NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG-------------------- 358 (552)
T ss_pred CCccccHHHHHHHHHHHHhcC----CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--------------------
Confidence 7788999999998884 4667888888887765 5689999999987752
Q ss_pred CCccHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCHH
Q 035707 563 DRSLEMETWHDLANVYTS----LSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAK-GLQQEALVSFRKALDAEPNHVP 637 (713)
Q Consensus 563 ~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~eA~~~~~~al~~~p~~~~ 637 (713)
...+.+.++.+|.. ..+...|..++.++.+.. ++.+...++..+..- +.++.+...+.......-..+.
T Consensus 359 ----~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q 432 (552)
T KOG1550|consen 359 ----HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQ 432 (552)
T ss_pred ----ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHh
Confidence 27788888888875 357899999999999887 455555555555433 7777777766655544322211
Q ss_pred HHHHHHHHHHHh------cC--CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHccc
Q 035707 638 SLVSIARVLRQI------GG--ESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGA--SALEAVECFEAAALLE 704 (713)
Q Consensus 638 ~~~~la~~~~~~------g~--~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~--~~~~A~~~~~~a~~l~ 704 (713)
.+.+.+.... +. -....+...+.++.. ..++.+...||.+|..-... +++.|..+|.+|....
T Consensus 433 --~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~ 505 (552)
T KOG1550|consen 433 --SNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG 505 (552)
T ss_pred --hHHHHHHHhccccccccccccchhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence 1111111111 11 012245555555543 45778889999998765111 3899999999887654
No 259
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.019 Score=55.41 Aligned_cols=163 Identities=17% Similarity=0.032 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHh
Q 035707 356 LELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKT 435 (713)
Q Consensus 356 ~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 435 (713)
...+..+.-....|++. +|...+..++. ..|++. .+...++.|| ...|+.+.|...+...- .
T Consensus 135 e~~~~~~~~~~~~e~~~-~a~~~~~~al~-~~~~~~----~~~~~la~~~-----------l~~g~~e~A~~iL~~lP-~ 196 (304)
T COG3118 135 EEALAEAKELIEAEDFG-EAAPLLKQALQ-AAPENS----EAKLLLAECL-----------LAAGDVEAAQAILAALP-L 196 (304)
T ss_pred HHHHHHhhhhhhccchh-hHHHHHHHHHH-hCcccc----hHHHHHHHHH-----------HHcCChHHHHHHHHhCc-c
Confidence 34455666788899999 99999999999 788887 9999999999 78888888888887532 1
Q ss_pred hCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHH
Q 035707 436 MRERD-PYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGEL 514 (713)
Q Consensus 436 ~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 514 (713)
....+ ...+......+.+.....+. ..+++.+..+|++. .+-+.++..+...|+.++|.+.+-..+..+-.+.+..+
T Consensus 197 ~~~~~~~~~l~a~i~ll~qaa~~~~~-~~l~~~~aadPdd~-~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~ 274 (304)
T COG3118 197 QAQDKAAHGLQAQIELLEQAAATPEI-QDLQRRLAADPDDV-EAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEA 274 (304)
T ss_pred cchhhHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHH
Confidence 11111 11111111222333222222 23455567789998 99999999999999999999999999988876777788
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHH
Q 035707 515 LRTKAKLQIAQGRLKNAIETYVNL 538 (713)
Q Consensus 515 ~~~la~~~~~~g~~~~A~~~~~~~ 538 (713)
...+..++...|.-+.+...+++-
T Consensus 275 Rk~lle~f~~~g~~Dp~~~~~RRk 298 (304)
T COG3118 275 RKTLLELFEAFGPADPLVLAYRRK 298 (304)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHH
Confidence 888888888888655555555543
No 260
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.14 E-value=0.023 Score=59.31 Aligned_cols=102 Identities=17% Similarity=0.146 Sum_probs=90.5
Q ss_pred HCCCHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHH
Q 035707 580 SLSQWRDAEVCLSKSKAINPYSA-SGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIR 658 (713)
Q Consensus 580 ~~g~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~ 658 (713)
..|+...|+.|+..++...|... ....+++.+....|....|-..+.+++.+....+-.++.+|.++....+.+ .|+
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~--~a~ 696 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS--GAL 696 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH--HHH
Confidence 47999999999999999888643 457889999999999999999999999999888889999999999999998 999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHH
Q 035707 659 CFLTDALRLDRTNTTAWYNLGLLYK 683 (713)
Q Consensus 659 ~~~~~al~~~p~~~~~~~~lg~~~~ 683 (713)
+.|++|++.+|+++.+...|-.+-+
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999988777655544
No 261
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.13 E-value=0.46 Score=49.81 Aligned_cols=132 Identities=9% Similarity=0.087 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 035707 570 TWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLL-YEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQ 648 (713)
Q Consensus 570 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 648 (713)
+|..+-..-.+..-...|...|.++-+.......++..-|.+ |...++..-|...|+-.+...++.+..-......+..
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~ 447 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSH 447 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 444455555555567778888888776543333444444433 4557888889999998888888888877777788888
Q ss_pred hcCCChHHHHHHHHHHHhh--CCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcccc
Q 035707 649 IGGESMATIRCFLTDALRL--DRT-NTTAWYNLGLLYKTYAGASALEAVECFEAAALLEE 705 (713)
Q Consensus 649 ~g~~~l~~A~~~~~~al~~--~p~-~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p 705 (713)
.++-. .|+.+|++++.. .|+ ...+|..+-.--..-|+ ...+++.=++-....|
T Consensus 448 lNdd~--N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd--L~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 448 LNDDN--NARALFERVLTSVLSADKSKEIWDRMLEYESNVGD--LNSILKLEKRRFTAFP 503 (656)
T ss_pred hCcch--hHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc--HHHHHHHHHHHHHhcc
Confidence 88876 888889888876 333 34677777777777777 7777766665555444
No 262
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.11 E-value=0.53 Score=50.20 Aligned_cols=116 Identities=7% Similarity=-0.057 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHH-HHHHHcCCHHHHHHHHHH
Q 035707 423 SQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLA-RVLSAQKQFADAESVIND 501 (713)
Q Consensus 423 ~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la-~~~~~~g~~~~A~~~~~~ 501 (713)
+.+...|...+ ...|.-...|-..|..-.+.|..+.+.+.|++.+.--|.+. ..|...- .+....|+...-...|++
T Consensus 62 ~~~r~~y~~fL-~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~Sv-dlW~~Y~~f~~n~~~d~~~lr~~fe~ 139 (577)
T KOG1258|consen 62 DALREVYDIFL-SKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSV-DLWLSYLAFLKNNNGDPETLRDLFER 139 (577)
T ss_pred HHHHHHHHHHH-hhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 44445555555 55555555556666666666666666666666666655444 5544332 222234555555555555
Q ss_pred HhhccCC-CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 035707 502 SLDQTGK-WDQGELLRTKAKLQIAQGRLKNAIETYVNLLA 540 (713)
Q Consensus 502 al~~~p~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 540 (713)
|...... .....+|-........++++..-...|++.++
T Consensus 140 A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 140 AKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 5554321 11223444444444455555555555555544
No 263
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=0.47 Score=49.00 Aligned_cols=203 Identities=15% Similarity=0.150 Sum_probs=138.7
Q ss_pred cCCHHHHHHHHHHHhhccCC---CC-cH--------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 035707 489 QKQFADAESVINDSLDQTGK---WD-QG--------ELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLV 556 (713)
Q Consensus 489 ~g~~~~A~~~~~~al~~~p~---~~-~~--------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 556 (713)
.|-+++|.++-++++....+ .+ .. ..+-.++.+-.-.|++.+|++....+.+.....+...
T Consensus 288 ~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~------- 360 (629)
T KOG2300|consen 288 AGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPL------- 360 (629)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchH-------
Confidence 46788888888888765311 11 11 2334556667788999999999998887654321100
Q ss_pred hhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-C--hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 035707 557 KNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPY-S--ASGWHSTGLLYEAKGLQQEALVSFRKALDAEP 633 (713)
Q Consensus 557 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~--~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 633 (713)
-.....+.+...+|......+.++.|...|..+.+.... + +..-.+++..|.+.|+-+.--+..+ .+.|
T Consensus 361 -----Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld---~i~p 432 (629)
T KOG2300|consen 361 -----LLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALD---LIGP 432 (629)
T ss_pred -----HHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHH---hcCC
Confidence 011234778888999999999999999999999876532 2 3345678999999876554333333 3445
Q ss_pred CC----------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 035707 634 NH----------VPSLVSIARVLRQIGGESMATIRCFLTDALRLDRT------NTTAWYNLGLLYKTYAGASALEAVECF 697 (713)
Q Consensus 634 ~~----------~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~~~A~~~~ 697 (713)
.+ ..+++..|...+.++++. +|..++.+.++...- ..-.+..||.+....|+ ..++....
T Consensus 433 ~nt~s~ssq~l~a~~~~v~glfaf~qn~ln--EaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn--~~es~nmv 508 (629)
T KOG2300|consen 433 LNTNSLSSQRLEASILYVYGLFAFKQNDLN--EAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGN--TVESRNMV 508 (629)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcc--hHHHHhcc
Confidence 42 235566677778888887 999999999987521 12345568999999999 99999888
Q ss_pred HHHHccccCCCCC
Q 035707 698 EAAALLEESAPVE 710 (713)
Q Consensus 698 ~~a~~l~p~~~~~ 710 (713)
.-+.++....|+.
T Consensus 509 rpamqlAkKi~Di 521 (629)
T KOG2300|consen 509 RPAMQLAKKIPDI 521 (629)
T ss_pred chHHHHHhcCCCc
Confidence 8888765554443
No 264
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.99 E-value=0.056 Score=48.85 Aligned_cols=100 Identities=24% Similarity=0.168 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 035707 515 LRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKS 594 (713)
Q Consensus 515 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 594 (713)
...++..+...|++++|+..++.++....+ .....-+-.+|+.+....|++++|+..++..
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~D-------------------e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~ 152 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKD-------------------ENLKALAALRLARVQLQQKKADAALKTLDTI 152 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchh-------------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence 345666677777777777777776654211 1222445566777777777777777766543
Q ss_pred HhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 035707 595 KAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPN 634 (713)
Q Consensus 595 l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 634 (713)
...+ -.+......|.++...|+-++|...|++++...++
T Consensus 153 ~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 153 KEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred cccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 3211 12233455677777777777777777777776543
No 265
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0095 Score=57.95 Aligned_cols=102 Identities=15% Similarity=0.067 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 035707 393 MASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERD----PYIIYHLCLENAEQRKLDVALYYAKKLL 468 (713)
Q Consensus 393 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l 468 (713)
-.+..+.--|.-| +..++|..|+..|.+.+ +....| ...|.+.+-+....|+|..|+....+++
T Consensus 79 E~Aen~KeeGN~~-----------fK~Kryk~A~~~Yt~Gl-k~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al 146 (390)
T KOG0551|consen 79 EQAENYKEEGNEY-----------FKEKRYKDAVESYTEGL-KKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAAL 146 (390)
T ss_pred HHHHHHHHHhHHH-----------HHhhhHHHHHHHHHHHH-hhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556667777 78899999999999999 665444 4567889999999999999999999999
Q ss_pred hhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccC
Q 035707 469 NLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTG 507 (713)
Q Consensus 469 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 507 (713)
..+|.+. .++++-+.++..+.++.+|..+++..+.++.
T Consensus 147 ~~~P~h~-Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 147 KLKPTHL-KAYIRGAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred hcCcchh-hhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 9999999 9999999999999999999999999987763
No 266
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.94 E-value=0.0015 Score=41.33 Aligned_cols=33 Identities=39% Similarity=0.586 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCC
Q 035707 673 TAWYNLGLLYKTYAGASALEAVECFEAAALLEESA 707 (713)
Q Consensus 673 ~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~ 707 (713)
.+|+.+|.+|...|+ +++|..+|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~--~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGD--YEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTS--HHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCC
Confidence 578899999999999 999999999999998853
No 267
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.93 E-value=0.025 Score=51.10 Aligned_cols=100 Identities=20% Similarity=0.076 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHh
Q 035707 356 LELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKT 435 (713)
Q Consensus 356 ~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 435 (713)
.+.+.+++.+...++++ +|+..++.++. .+.+..+.+.+-..|+.+. ...|.+++|+..+....
T Consensus 90 laaL~lAk~~ve~~~~d-~A~aqL~~~l~--~t~De~lk~l~~lRLArvq-----------~q~~k~D~AL~~L~t~~-- 153 (207)
T COG2976 90 LAALELAKAEVEANNLD-KAEAQLKQALA--QTKDENLKALAALRLARVQ-----------LQQKKADAALKTLDTIK-- 153 (207)
T ss_pred HHHHHHHHHHHhhccHH-HHHHHHHHHHc--cchhHHHHHHHHHHHHHHH-----------HHhhhHHHHHHHHhccc--
Confidence 34455666666666666 66666666665 4555555566666666666 56666666666665332
Q ss_pred hCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Q 035707 436 MRERD--PYIIYHLCLENAEQRKLDVALYYAKKLLNLEAR 473 (713)
Q Consensus 436 ~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 473 (713)
..+ +......|.++...|+-++|...|++++...++
T Consensus 154 --~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 154 --EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred --cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 111 222344566666666666666666666665533
No 268
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.87 E-value=0.68 Score=47.55 Aligned_cols=196 Identities=17% Similarity=0.046 Sum_probs=105.5
Q ss_pred HHHhcHHHHHHHHHHHHHhhCCCCHHHHHH------HHHHHH-HcCCHH---HHHHHHHHHHhhhcCCc--hHHHHHHHH
Q 035707 417 KRILKQSQALVALETAEKTMRERDPYIIYH------LCLENA-EQRKLD---VALYYAKKLLNLEARSN--VKGYLLLAR 484 (713)
Q Consensus 417 ~~~~~~~~A~~~~~~al~~~~p~~~~~~~~------la~~~~-~~g~~~---~A~~~~~~~l~~~p~~~--~~~~~~la~ 484 (713)
.+.++...|-+++.-.. .++|+.....-. +-.+.. ...++. .=+..++.+-..+-+.- +.-+..-|.
T Consensus 309 Vk~~~T~~a~q~l~lL~-~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak 387 (549)
T PF07079_consen 309 VKQVQTEEAKQYLALLK-ILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAK 387 (549)
T ss_pred HHHHhHHHHHHHHHHHH-hcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 45677788888887666 788876421111 111111 111111 11222222222222211 123344466
Q ss_pred HHHHcCC-HHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHH--HHHHHHHHHhhhhhhhhhhhhhhhhccc
Q 035707 485 VLSAQKQ-FADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIE--TYVNLLAVLQFRKKSFSAGKNLVKNRQN 561 (713)
Q Consensus 485 ~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 561 (713)
-+...|. -++|+..++.++...+ .+..... ...... ...|.+|+. .+.+++.+.. .+......
T Consensus 388 ~lW~~g~~dekalnLLk~il~ft~--yD~ec~n-~v~~fv-Kq~Y~qaLs~~~~~rLlkLe~----------fi~e~gl~ 453 (549)
T PF07079_consen 388 HLWEIGQCDEKALNLLKLILQFTN--YDIECEN-IVFLFV-KQAYKQALSMHAIPRLLKLED----------FITEVGLT 453 (549)
T ss_pred HHHhcCCccHHHHHHHHHHHHhcc--ccHHHHH-HHHHHH-HHHHHHHHhhhhHHHHHHHHH----------HHHhcCCC
Confidence 6777777 7888999998888876 4443322 111111 122333322 2223322210 11111111
Q ss_pred CCCccHHHHHHHHH--HHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 035707 562 HDRSLEMETWHDLA--NVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKA 628 (713)
Q Consensus 562 ~~~~~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~a 628 (713)
+....+.+.-+.|+ ..++..|++.++.-+-.-..++.| ++.++..+|.+.....+|++|..++...
T Consensus 454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 22223344444444 456788999999888888888888 8899999999999999999999888653
No 269
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.85 E-value=0.6 Score=46.64 Aligned_cols=99 Identities=17% Similarity=0.122 Sum_probs=68.6
Q ss_pred hhhcCCHHHHHhhhhcCCccccchhhhhhhhhhccccccCCCCCCCCCcchhHHHHHHHHHHHhhhhhhccC-chHHHHH
Q 035707 94 EFQKGNIEAALHVFEGIDVAAVTSRMKVSLSRRCDQNRRRSQSDAAPPMSMHAVSLLVEAIFLKTKSLQGLG-RFEEACQ 172 (713)
Q Consensus 94 ~~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~g-~~~eA~~ 172 (713)
...+||++.|..+|.++..... . ........+.+.+|.-|+.+.+.+ ++++|..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~--~-----------------------~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~ 57 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLN--S-----------------------LDPDMAEELARVCYNIGKSLLSKKDKYEEAVK 57 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHh--c-----------------------CCcHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 4578999999999998843210 0 012334567788999999999999 9999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCcccchHHHHHHHHHHhHHHHHhcCChhH
Q 035707 173 SCKVILDTVEHALPEGLPGNHSIDCKLQETLNKAVELLPELYKLAGDPDE 222 (713)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~e 222 (713)
+++++.++.+..-. .... . ....+.-...+..++.+|...+.++.
T Consensus 58 wL~~a~~~l~~~~~-~~~~--~--~~~~elr~~iL~~La~~~l~~~~~~~ 102 (278)
T PF08631_consen 58 WLQRAYDILEKPGK-MDKL--S--PDGSELRLSILRLLANAYLEWDTYES 102 (278)
T ss_pred HHHHHHHHHHhhhh-cccc--C--CcHHHHHHHHHHHHHHHHHcCCChHH
Confidence 99999998765211 0111 0 13345555677778888887777653
No 270
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.83 E-value=0.65 Score=46.89 Aligned_cols=165 Identities=12% Similarity=0.018 Sum_probs=106.9
Q ss_pred HHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHH----
Q 035707 417 KRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQ----RKLDVALYYAKKLLNLEARSNVKGYLLLARVLSA---- 488 (713)
Q Consensus 417 ~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~---- 488 (713)
...+++..+...+..+. . -.++.....++..|... .+..+|..+|+.+. ...++ .+.+.+|.++..
T Consensus 52 ~~~~~~~~a~~~~~~a~-~--~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~-~a~~~lg~~~~~G~gv 125 (292)
T COG0790 52 AYPPDYAKALKSYEKAA-E--LGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLA-EALFNLGLMYANGRGV 125 (292)
T ss_pred cccccHHHHHHHHHHhh-h--cCChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccH-HHHHhHHHHHhcCCCc
Confidence 34577788999998877 4 23446778888888754 46888999999554 44555 788889999887
Q ss_pred cCCHHHHHHHHHHHhhccCCCCc-HHHHHHHHHHHHHhC-------CHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcc
Q 035707 489 QKQFADAESVINDSLDQTGKWDQ-GELLRTKAKLQIAQG-------RLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQ 560 (713)
Q Consensus 489 ~g~~~~A~~~~~~al~~~p~~~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 560 (713)
..+..+|..+|+++.+... .. ......++.++..-. +...|...|.++-...
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~--~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~------------------ 185 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGN--VEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG------------------ 185 (292)
T ss_pred ccCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc------------------
Confidence 4599999999999998853 12 233666777665532 1224555555554442
Q ss_pred cCCCccHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC
Q 035707 561 NHDRSLEMETWHDLANVYTS----LSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKG 616 (713)
Q Consensus 561 ~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 616 (713)
.+.+...+|.+|.. ..++.+|...|.++-+... ...++.++ ++...|
T Consensus 186 ------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 186 ------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred ------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 25555666655543 2356666666666666554 55566666 444444
No 271
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.82 E-value=0.16 Score=51.28 Aligned_cols=167 Identities=16% Similarity=0.091 Sum_probs=92.1
Q ss_pred HHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHc----CCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHH--
Q 035707 451 NAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQ----KQFADAESVINDSLDQTGKWDQGELLRTKAKLQIA-- 524 (713)
Q Consensus 451 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~-- 524 (713)
....+++..|...+..+-.. ... .....++.++... .+..+|..+|..+.+. .++...+.+|.++..
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~--~~~-~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~----g~~~a~~~lg~~~~~G~ 123 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAEL--GDA-AALALLGQMYGAGKGVSRDKTKAADWYRCAAAD----GLAEALFNLGLMYANGR 123 (292)
T ss_pred ccccccHHHHHHHHHHhhhc--CCh-HHHHHHHHHHHhccCccccHHHHHHHHHHHhhc----ccHHHHHhHHHHHhcCC
Confidence 34566777777777766541 122 4555666665543 3566677777755443 345566667776665
Q ss_pred --hCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHH
Q 035707 525 --QGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLS-------QWRDAEVCLSKSK 595 (713)
Q Consensus 525 --~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al 595 (713)
..++.+|..+|+++....... -..+...++..|..-. +...|...|.++-
T Consensus 124 gv~~d~~~A~~~~~~Aa~~g~~~---------------------a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa 182 (292)
T COG0790 124 GVPLDLVKALKYYEKAAKLGNVE---------------------AALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAA 182 (292)
T ss_pred CcccCHHHHHHHHHHHHHcCChh---------------------HHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHH
Confidence 336677777777766652100 0233556666655431 1224566666555
Q ss_pred hcCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 035707 596 AINPYSASGWHSTGLLYEA----KGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIG 650 (713)
Q Consensus 596 ~~~p~~~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g 650 (713)
... ++.+...+|.+|.. ..++.+|..+|.++-+... ..+.+.++ ++...|
T Consensus 183 ~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 183 ELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred Hhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 443 45556666655543 2255666666666665544 55555555 444444
No 272
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.80 E-value=0.023 Score=50.62 Aligned_cols=117 Identities=17% Similarity=0.044 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 035707 569 ETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQ-EALVSFRKALDAEPNHVPSLVSIARVLR 647 (713)
Q Consensus 569 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~-eA~~~~~~al~~~p~~~~~~~~la~~~~ 647 (713)
......|......++...++..+++++.+...+.-.-.. ...|- .....++.. ...+...++..+.
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~-------~~~W~~~~r~~l~~~------~~~~~~~l~~~~~ 73 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLD-------DEEWVEPERERLREL------YLDALERLAEALL 73 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGT-------TSTTHHHHHHHHHHH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCC-------ccHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 344445666677788888888888888775332110000 01111 111222221 2345566777777
Q ss_pred HhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHc
Q 035707 648 QIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAAL 702 (713)
Q Consensus 648 ~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~ 702 (713)
..|+++ +|+..+++++..+|.+..+|..+..+|...|+ ..+|+..|++...
T Consensus 74 ~~~~~~--~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~--~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 74 EAGDYE--EALRLLQRALALDPYDEEAYRLLMRALAAQGR--RAEALRVYERYRR 124 (146)
T ss_dssp HTT-HH--HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT---HHHHHHHHHHHHH
T ss_pred hccCHH--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcC--HHHHHHHHHHHHH
Confidence 888876 88888888888888888888888888888888 8888888887654
No 273
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.74 E-value=0.15 Score=52.10 Aligned_cols=164 Identities=12% Similarity=0.004 Sum_probs=118.1
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHH
Q 035707 427 VALETAEKTMRERDPYIIYHLCLENAEQRK------------LDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFAD 494 (713)
Q Consensus 427 ~~~~~al~~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~ 494 (713)
..|++.+ +.+|.|..+|..+....-..-. .+.-+..+++|++.+|++. ..+..+-.+.....+.++
T Consensus 6 ~el~~~v-~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~-~L~l~~l~~~~~~~~~~~ 83 (321)
T PF08424_consen 6 AELNRRV-RENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSE-RLLLGYLEEGEKVWDSEK 83 (321)
T ss_pred HHHHHHH-HhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhCCHHH
Confidence 4577888 9999999999988866544322 4567889999999999888 888888888888889999
Q ss_pred HHHHHHHHhhccCCCCcHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHH
Q 035707 495 AESVINDSLDQTGKWDQGELLRTKAKLQIA---QGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETW 571 (713)
Q Consensus 495 A~~~~~~al~~~p~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (713)
..+-+++++..+| .+..+|......... .-.+.+....|.+++............ ..............+.
T Consensus 84 l~~~we~~l~~~~--~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~----~~~~~~~~e~~~l~v~ 157 (321)
T PF08424_consen 84 LAKKWEELLFKNP--GSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMT----SHPDLPELEEFMLYVF 157 (321)
T ss_pred HHHHHHHHHHHCC--CChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccc----cccchhhHHHHHHHHH
Confidence 9999999999988 677777655544433 335788899999888765433111100 0000000011235666
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC
Q 035707 572 HDLANVYTSLSQWRDAEVCLSKSKAIN 598 (713)
Q Consensus 572 ~~la~~~~~~g~~~~A~~~~~~al~~~ 598 (713)
..+.......|..+.|+..++-.++.+
T Consensus 158 ~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 158 LRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 777778888999999999999998876
No 274
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.73 E-value=0.12 Score=45.50 Aligned_cols=112 Identities=20% Similarity=0.158 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 035707 568 METWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLR 647 (713)
Q Consensus 568 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~ 647 (713)
...+..+..+-...++.+++...+.-+.-+.|..+..-..-|.++...|+|.+|+..++.+....|..+.+.-.++.++.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 55667777788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 035707 648 QIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYK 683 (713)
Q Consensus 648 ~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 683 (713)
.+|+.+ =..+-.++++..+ ++.+......+..
T Consensus 90 ~~~D~~---Wr~~A~evle~~~-d~~a~~Lv~~Ll~ 121 (160)
T PF09613_consen 90 ALGDPS---WRRYADEVLESGA-DPDARALVRALLA 121 (160)
T ss_pred HcCChH---HHHHHHHHHhcCC-ChHHHHHHHHHHH
Confidence 999974 5556666776655 4555444433333
No 275
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.014 Score=56.94 Aligned_cols=105 Identities=18% Similarity=0.148 Sum_probs=84.6
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHH
Q 035707 511 QGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVC 590 (713)
Q Consensus 511 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 590 (713)
...-+..-|.-|++..+|..|+..|.+.|+... .+...+...|.+.+.+....|+|..|+.-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc------------------~D~dlnavLY~NRAAa~~~l~NyRs~l~D 141 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKC------------------ADPDLNAVLYTNRAAAQLYLGNYRSALND 141 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcC------------------CCccHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 444566667888888888999999988888742 33455677888888888888999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 035707 591 LSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEP 633 (713)
Q Consensus 591 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 633 (713)
..+++.++|.+..+++.-+.++....++++|+.+++..+.++.
T Consensus 142 cs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 142 CSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred HHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 9999999999888888888888888888888888888766543
No 276
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.59 E-value=0.0037 Score=39.51 Aligned_cols=30 Identities=40% Similarity=0.603 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 035707 604 GWHSTGLLYEAKGLQQEALVSFRKALDAEP 633 (713)
Q Consensus 604 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 633 (713)
+|+.+|.+|...|++++|+..|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344444444444444444444444444444
No 277
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.57 E-value=0.0012 Score=64.29 Aligned_cols=124 Identities=15% Similarity=0.067 Sum_probs=95.9
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCC
Q 035707 574 LANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGES 653 (713)
Q Consensus 574 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 653 (713)
-+.-.+..|.++.|++.|..++.++|.....+...+.++...+++..|+..+..++.++|+....+-..+.....+|++.
T Consensus 120 ~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e 199 (377)
T KOG1308|consen 120 QASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWE 199 (377)
T ss_pred HHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchH
Confidence 34455667889999999999999999999999999999999999999999999999999999888888899999999987
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHc
Q 035707 654 MATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAAL 702 (713)
Q Consensus 654 l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~ 702 (713)
+|...+..+.+++-+. .+--.+-.+.-..+. .++=...+++..+
T Consensus 200 --~aa~dl~~a~kld~dE-~~~a~lKeV~p~a~k--i~e~~~k~er~~~ 243 (377)
T KOG1308|consen 200 --EAAHDLALACKLDYDE-ANSATLKEVFPNAGK--IEEHRRKYERARE 243 (377)
T ss_pred --HHHHHHHHHHhccccH-HHHHHHHHhccchhh--hhhchhHHHHHHH
Confidence 8999999998876432 222334444444455 5555555555544
No 278
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.43 E-value=0.038 Score=45.08 Aligned_cols=106 Identities=11% Similarity=0.110 Sum_probs=78.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCC
Q 035707 361 ASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERD 440 (713)
Q Consensus 361 ~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~ 440 (713)
.+.-++..|++. +|+++.+..+. ..+++.. ....+..-|.++..++........+....-.+++.|.++. .+.|..
T Consensus 2 ~A~~~~~rGnhi-KAL~iied~i~-~h~~~~~-~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~-~Lsp~~ 77 (111)
T PF04781_consen 2 KAKDYFARGNHI-KALEIIEDLIS-RHGEDES-SWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAV-ELSPDS 77 (111)
T ss_pred hHHHHHHccCHH-HHHHHHHHHHH-HccCCCc-hHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHh-ccChhH
Confidence 356789999999 99999999998 5555441 1256677788887666655555555666677888888888 888888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 035707 441 PYIIYHLCLENAEQRKLDVALYYAKKLLNL 470 (713)
Q Consensus 441 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 470 (713)
+..++.+|.-+-....|+++..-.++++..
T Consensus 78 A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 78 AHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 777888887776667777777777776654
No 279
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.39 E-value=0.0031 Score=61.56 Aligned_cols=91 Identities=14% Similarity=0.076 Sum_probs=74.9
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHH
Q 035707 612 YEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASAL 691 (713)
Q Consensus 612 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~ 691 (713)
....|.+++|++.|..++.++|.....+...+.++.++++.. .|+.-+..+++++|+....+-..|.....+|+ ++
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~--~airD~d~A~ein~Dsa~~ykfrg~A~rllg~--~e 199 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPN--AAIRDCDFAIEINPDSAKGYKFRGYAERLLGN--WE 199 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCc--hhhhhhhhhhccCcccccccchhhHHHHHhhc--hH
Confidence 345677888888888888888888888888888888888887 88888888888888888878788888888888 88
Q ss_pred HHHHHHHHHHccccC
Q 035707 692 EAVECFEAAALLEES 706 (713)
Q Consensus 692 ~A~~~~~~a~~l~p~ 706 (713)
+|...+..+.+++-+
T Consensus 200 ~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 200 EAAHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHHHhcccc
Confidence 888888888876543
No 280
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.34 E-value=0.61 Score=47.71 Aligned_cols=75 Identities=16% Similarity=0.102 Sum_probs=55.7
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 035707 428 ALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLD 504 (713)
Q Consensus 428 ~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 504 (713)
-++.-+ +-+|.|...|+.|...+..+|.+++-.+.++++..-.|-.+ .+|......-...++|.....+|.+.+.
T Consensus 30 rLRerI-kdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~-~aw~ly~s~ELA~~df~svE~lf~rCL~ 104 (660)
T COG5107 30 RLRERI-KDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIME-HAWRLYMSGELARKDFRSVESLFGRCLK 104 (660)
T ss_pred HHHHHh-hcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCcccc-HHHHHHhcchhhhhhHHHHHHHHHHHHh
Confidence 455566 78899999999999999999999999999999988777766 7776555544455555555555555443
No 281
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.32 E-value=0.004 Score=39.95 Aligned_cols=30 Identities=33% Similarity=0.472 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHcccc
Q 035707 674 AWYNLGLLYKTYAGASALEAVECFEAAALLEE 705 (713)
Q Consensus 674 ~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p 705 (713)
+|.+||.+|...|+ +++|+++|++++.+.+
T Consensus 1 al~~Lg~~~~~~g~--~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGD--YEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT---HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC--HHHHHHHHHHHHHhcc
Confidence 47789999999999 9999999999766543
No 282
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.30 E-value=0.35 Score=49.98 Aligned_cols=157 Identities=12% Similarity=-0.058 Sum_probs=94.4
Q ss_pred CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhh-----h--hhhhhhhcccCCCccHHHHHHHHHHHHHHCC
Q 035707 510 DQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFS-----A--GKNLVKNRQNHDRSLEMETWHDLANVYTSLS 582 (713)
Q Consensus 510 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 582 (713)
.+.+.+..++.++..+|+...|.+.+++++-.......... . .+...-.-....+..-..+.+.....+.+.|
T Consensus 38 yHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG 117 (360)
T PF04910_consen 38 YHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRG 117 (360)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcC
Confidence 56666666666666666666666666666544321111000 0 0000000001112223455666778888999
Q ss_pred CHHHHHHHHHHHHhcCCC-ChhHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHhcCC---
Q 035707 583 QWRDAEVCLSKSKAINPY-SASGW-HSTGLLYEAKGLQQEALVSFRKALDAEP-----NHVPSLVSIARVLRQIGGE--- 652 (713)
Q Consensus 583 ~~~~A~~~~~~al~~~p~-~~~~~-~~lg~~~~~~g~~~eA~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~--- 652 (713)
-+..|.++.+-.+.++|. |+... +.+-....+.++++--+..++....... .-+...+..+.++...++.
T Consensus 118 ~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~ 197 (360)
T PF04910_consen 118 CWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESS 197 (360)
T ss_pred cHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCcccc
Confidence 999999999999999998 66544 3444444566788777777776554211 1234566777888888776
Q ss_pred ------------ChHHHHHHHHHHHhhC
Q 035707 653 ------------SMATIRCFLTDALRLD 668 (713)
Q Consensus 653 ------------~l~~A~~~~~~al~~~ 668 (713)
+ .|...+.+|+...
T Consensus 198 ~~~~~~~~~~~~~--~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 198 QSSAQSGRSENSE--SADEALQKAILRF 223 (360)
T ss_pred ccccccccccchh--HHHHHHHHHHHHh
Confidence 5 7777777776543
No 283
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.30 E-value=0.4 Score=42.48 Aligned_cols=123 Identities=15% Similarity=0.021 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHH
Q 035707 490 KQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEME 569 (713)
Q Consensus 490 g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (713)
+..++|+..|...-+..-...-.-+....+.+....|+...|+..|..+-...+.. .+..--
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P------------------~~~rd~ 133 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIP------------------QIGRDL 133 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCc------------------chhhHH
Confidence 34455555555444333211122344455555555555555555555544332110 011112
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH-hcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 035707 570 TWHDLANVYTSLSQWRDAEVCLSKSK-AINPYSASGWHSTGLLYEAKGLQQEALVSFRKALD 630 (713)
Q Consensus 570 ~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 630 (713)
+...-+.++...|-|++-....+..- ..+|....+.-.||..-.+.|++.+|..+|.+...
T Consensus 134 ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 134 ARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 23334445555566655544443321 12233344455566666666666666666665544
No 284
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.27 E-value=0.0071 Score=37.78 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCC
Q 035707 673 TAWYNLGLLYKTYAGASALEAVECFEAAALLEESA 707 (713)
Q Consensus 673 ~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~ 707 (713)
++++.+|.++...|+ +++|+..|++++...|++
T Consensus 1 ~a~~~~a~~~~~~g~--~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGD--YDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCH--HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccC--HHHHHHHHHHHHHHCcCC
Confidence 367888888888888 888888888888888874
No 285
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.19 E-value=0.81 Score=49.36 Aligned_cols=175 Identities=11% Similarity=0.016 Sum_probs=99.1
Q ss_pred HHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHH----------HHHHHHHHHcCCHHHHHHHHH
Q 035707 396 IANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYII----------YHLCLENAEQRKLDVALYYAK 465 (713)
Q Consensus 396 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~----------~~la~~~~~~g~~~~A~~~~~ 465 (713)
+.|.+++..- ...-.++.|...|-+.- .. |. .... ...+.+-.--|++++|.+.|-
T Consensus 693 rLWrllAe~A-----------l~Kl~l~tAE~AFVrc~-dY-~G-ik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yl 758 (1189)
T KOG2041|consen 693 RLWRLLAEYA-----------LFKLALDTAEHAFVRCG-DY-AG-IKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYL 758 (1189)
T ss_pred HHHHHHHHHH-----------HHHHhhhhHhhhhhhhc-cc-cc-hhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhh
Confidence 8888888877 44445556665555432 11 10 1111 223334444578888887775
Q ss_pred HHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 035707 466 KLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFR 545 (713)
Q Consensus 466 ~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 545 (713)
.+-. .+ .-..++.+.|+|-...+.++..-....+.....++..+|..+.....|++|.++|.+.-..
T Consensus 759 d~dr---rD------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---- 825 (1189)
T KOG2041|consen 759 DADR---RD------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---- 825 (1189)
T ss_pred ccch---hh------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch----
Confidence 4421 11 1223455667777766666654333222223457888898888888899998888764322
Q ss_pred hhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 035707 546 KKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSF 625 (713)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~ 625 (713)
-++..++....+|++-..+. ..-|++...+-.+|..+...|.-++|++.|
T Consensus 826 --------------------------e~~~ecly~le~f~~LE~la----~~Lpe~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 826 --------------------------ENQIECLYRLELFGELEVLA----RTLPEDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred --------------------------HhHHHHHHHHHhhhhHHHHH----HhcCcccchHHHHHHHHHhhchHHHHHHHH
Confidence 13444555555555433332 233555566666667776777777776666
Q ss_pred HH
Q 035707 626 RK 627 (713)
Q Consensus 626 ~~ 627 (713)
-+
T Consensus 876 Lr 877 (1189)
T KOG2041|consen 876 LR 877 (1189)
T ss_pred Hh
Confidence 44
No 286
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.18 E-value=0.36 Score=49.33 Aligned_cols=143 Identities=13% Similarity=0.048 Sum_probs=107.8
Q ss_pred CccHHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 035707 564 RSLEMETWHDLANVYTSLSQ------------WRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDA 631 (713)
Q Consensus 564 ~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 631 (713)
+|.+..+|..++...-..-. .+.-+.+|++|++.+|++...+..+-....+..+.++..+-+++++..
T Consensus 15 ~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 15 NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35558888887766554422 456678999999999999999988888888888999999999999999
Q ss_pred CCCCHHHHHHHHHHH-HHhcCCChHHHHHHHHHHHhhCC----C-------C-------HHHHHHHHHHHHHhCCCCHHH
Q 035707 632 EPNHVPSLVSIARVL-RQIGGESMATIRCFLTDALRLDR----T-------N-------TTAWYNLGLLYKTYAGASALE 692 (713)
Q Consensus 632 ~p~~~~~~~~la~~~-~~~g~~~l~~A~~~~~~al~~~p----~-------~-------~~~~~~lg~~~~~~g~~~~~~ 692 (713)
+|++...|...-... .....+..+..+..|.++++.-. . . ..+...+.......|. .+.
T Consensus 95 ~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~--~E~ 172 (321)
T PF08424_consen 95 NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGY--TER 172 (321)
T ss_pred CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCc--hHH
Confidence 999999887654443 33556655678888888776311 0 0 1245567777888999 999
Q ss_pred HHHHHHHHHccccCCC
Q 035707 693 AVECFEAAALLEESAP 708 (713)
Q Consensus 693 A~~~~~~a~~l~p~~~ 708 (713)
|+..++..++++=-.|
T Consensus 173 Ava~~Qa~lE~n~~~P 188 (321)
T PF08424_consen 173 AVALWQALLEFNFFRP 188 (321)
T ss_pred HHHHHHHHHHHHcCCc
Confidence 9999999999754333
No 287
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.15 E-value=0.069 Score=42.60 Aligned_cols=66 Identities=11% Similarity=0.079 Sum_probs=29.8
Q ss_pred HHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHH
Q 035707 463 YAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLK 529 (713)
Q Consensus 463 ~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~ 529 (713)
.+++.+..+|++. .+.+.+|..+...|++++|++.+-.++..++.+.+..+...+..++...|.-+
T Consensus 10 al~~~~a~~P~D~-~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 10 ALEAALAANPDDL-DARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHSTT-H-HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHcCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 3444444455544 55555555555555555555555555555444444444444444444444433
No 288
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.12 E-value=0.01 Score=36.99 Aligned_cols=32 Identities=22% Similarity=0.263 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 035707 443 IIYHLCLENAEQRKLDVALYYAKKLLNLEARS 474 (713)
Q Consensus 443 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 474 (713)
+++.+|.++...|++++|+..|+++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 56777777777777777777777777777753
No 289
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.11 E-value=0.53 Score=44.72 Aligned_cols=223 Identities=13% Similarity=0.098 Sum_probs=138.7
Q ss_pred HHhcHHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh-----cCCchHHHHHHHHHHHH
Q 035707 418 RILKQSQALVALETAEKTMRERDP----YIIYHLCLENAEQRKLDVALYYAKKLLNLE-----ARSNVKGYLLLARVLSA 488 (713)
Q Consensus 418 ~~~~~~~A~~~~~~al~~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~~~la~~~~~ 488 (713)
+....++|+..|++++ .+.+... .++-.+..+++++++|++-+..|++++.-- .+........+-..-..
T Consensus 39 ~e~~p~~Al~sF~kVl-elEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt 117 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVL-ELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST 117 (440)
T ss_pred cccCHHHHHHHHHHHH-hcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh
Confidence 4457899999999999 9987653 467778899999999999999999887521 12221233333333333
Q ss_pred cCCHHHHHHHHHHHhhccCCCCcHHHH----HHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCC
Q 035707 489 QKQFADAESVINDSLDQTGKWDQGELL----RTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDR 564 (713)
Q Consensus 489 ~g~~~~A~~~~~~al~~~p~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (713)
..+.+--...|+..++.-.+..+..+| ..+|.++...+.|..-.+.++++-...+.....-. ....
T Consensus 118 S~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD----------~kKG 187 (440)
T KOG1464|consen 118 SKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDD----------QKKG 187 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchh----------hhcc
Confidence 444444444444443321111222333 46899999999998888877776655432210000 0011
Q ss_pred ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--ChhHHH----HHHHHHHHcCCHHHHHHHHHHHHhcC-----C
Q 035707 565 SLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPY--SASGWH----STGLLYEAKGLQQEALVSFRKALDAE-----P 633 (713)
Q Consensus 565 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~----~lg~~~~~~g~~~eA~~~~~~al~~~-----p 633 (713)
....++|..-...|..+.+...-...|++++.+..- +|.+.- .=|..+.+.|++++|-..|-.|.+-. |
T Consensus 188 tQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGsp 267 (440)
T KOG1464|consen 188 TQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSP 267 (440)
T ss_pred chhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCc
Confidence 122556666678888888888888999999887643 233222 22556778899999999888888653 3
Q ss_pred CCHHH--HHHHHHHHHHhcC
Q 035707 634 NHVPS--LVSIARVLRQIGG 651 (713)
Q Consensus 634 ~~~~~--~~~la~~~~~~g~ 651 (713)
....+ +.-++..+.+.|-
T Consensus 268 RRttCLKYLVLANMLmkS~i 287 (440)
T KOG1464|consen 268 RRTTCLKYLVLANMLMKSGI 287 (440)
T ss_pred chhHHHHHHHHHHHHHHcCC
Confidence 33333 3445666666653
No 290
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.10 E-value=0.94 Score=40.24 Aligned_cols=141 Identities=13% Similarity=0.076 Sum_probs=101.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhhhcC-CchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcH--HHHHHHHHHHHHhC
Q 035707 450 ENAEQRKLDVALYYAKKLLNLEAR-SNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQG--ELLRTKAKLQIAQG 526 (713)
Q Consensus 450 ~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~~~la~~~~~~g 526 (713)
-+...++.++|+..|..+-+.+-. .++-+....+.+....|+...|...|+.+-...+.|.-. .+...-+.++...|
T Consensus 67 ~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 67 KLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccc
Confidence 455678889999999888765433 343577788899999999999999999988776544332 24455677788889
Q ss_pred CHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHH
Q 035707 527 RLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWH 606 (713)
Q Consensus 527 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 606 (713)
.|++-....+.+ .....|....+.-.||..-.+.|++.+|...|.+... +...+....
T Consensus 147 sy~dV~srvepL---------------------a~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnir 204 (221)
T COG4649 147 SYDDVSSRVEPL---------------------AGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIR 204 (221)
T ss_pred cHHHHHHHhhhc---------------------cCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHH
Confidence 888765544432 2334566678888899999999999999999998776 444455444
Q ss_pred HHHHHH
Q 035707 607 STGLLY 612 (713)
Q Consensus 607 ~lg~~~ 612 (713)
+.+.+.
T Consensus 205 qRAq~m 210 (221)
T COG4649 205 QRAQIM 210 (221)
T ss_pred HHHHHH
Confidence 444443
No 291
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.01 E-value=0.46 Score=49.14 Aligned_cols=169 Identities=12% Similarity=0.047 Sum_probs=112.2
Q ss_pred cCCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHH
Q 035707 350 ENSDCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVAL 429 (713)
Q Consensus 350 ~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~ 429 (713)
.+|-++.+++.++.++..+|+.. .|.++.++++-.. .... ...+..-..-...|.. .--
T Consensus 35 ~~PyHidtLlqls~v~~~~gd~~-~A~~lleRALf~~-e~~~----~~~F~~~~~~~~~g~~--------------rL~- 93 (360)
T PF04910_consen 35 KNPYHIDTLLQLSEVYRQQGDHA-QANDLLERALFAF-ERAF----HPSFSPFRSNLTSGNC--------------RLD- 93 (360)
T ss_pred HCCCcHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHH-HHHH----HHHhhhhhcccccCcc--------------ccC-
Confidence 47999999999999999999999 9999998887621 1111 0000000000000000 000
Q ss_pred HHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC-CchHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 035707 430 ETAEKTMRERD---PYIIYHLCLENAEQRKLDVALYYAKKLLNLEAR-SNVKGYLLLARVLSAQKQFADAESVINDSLDQ 505 (713)
Q Consensus 430 ~~al~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 505 (713)
-..+.| ..+++.....+.+.|-+..|+++.+-.+.++|. ++..+.+.+-....+.++++--+..++.....
T Consensus 94 -----~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~ 168 (360)
T PF04910_consen 94 -----YRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAK 168 (360)
T ss_pred -----CccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhh
Confidence 001223 235566777888999999999999999999998 77556666666777888888888877776552
Q ss_pred cC-CC--CcHHHHHHHHHHHHHhCCH---------------HHHHHHHHHHHHHHhh
Q 035707 506 TG-KW--DQGELLRTKAKLQIAQGRL---------------KNAIETYVNLLAVLQF 544 (713)
Q Consensus 506 ~p-~~--~~~~~~~~la~~~~~~g~~---------------~~A~~~~~~~l~~~~~ 544 (713)
.. .+ .-+...+..+.++...++. ++|...+.+++...|.
T Consensus 169 ~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 169 CYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred hhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 11 00 1224566777777778887 8999999999998764
No 292
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.75 E-value=1.6 Score=45.11 Aligned_cols=122 Identities=14% Similarity=0.037 Sum_probs=68.3
Q ss_pred HHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHH
Q 035707 418 RILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAES 497 (713)
Q Consensus 418 ~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~ 497 (713)
..|+...|-+-+..++ +..|.+|......+.+....|+|+.+...+..+-..-.... .+...+-+.....|++++|..
T Consensus 301 ~~gd~~aas~~~~~~l-r~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~-~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAAL-RNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTD-STLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHH-HhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCc-hHHHHHHHhhhchhhHHHHHH
Confidence 3466666666667777 77777777777777777777777777776655544333333 444455555556666666665
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 035707 498 VINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQ 543 (713)
Q Consensus 498 ~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 543 (713)
...-.+...- +++++...-+......|-++++...+++++.++|
T Consensus 379 ~a~~~l~~ei--e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 379 TAEMMLSNEI--EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHHHHhcccc--CChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 5555544322 2333333333333344444555555554444443
No 293
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.75 E-value=0.01 Score=48.45 Aligned_cols=105 Identities=21% Similarity=0.276 Sum_probs=71.9
Q ss_pred CcccccCCCCChHHHhhhhhhhccCC--------------HHHHHHHhhhHhhhcCCHHHHHhhhhcCCccccchhhhhh
Q 035707 57 GEMDAKVDNSNIEEAESSLRESGYLN--------------YEEARALLGRLEFQKGNIEAALHVFEGIDVAAVTSRMKVS 122 (713)
Q Consensus 57 ~~~~~~~~~~~~~~A~~~l~~~l~~~--------------~~~a~~llg~~~~~~g~~~~Al~~~~~~~~~~~~~~~~~~ 122 (713)
++++..+..|-|++|..+++.+.... .+=.++-|+..+-..|+|+++++.-+.. ..+
T Consensus 14 s~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~a---------L~Y 84 (144)
T PF12968_consen 14 SDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRA---------LRY 84 (144)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH---------HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHH---------HHH
Confidence 34577888999999999999998322 3445677888888999999987765432 233
Q ss_pred hhhhccccccCCCCCCCCCcchhHHHHHHHHHHHhhhhhhccCchHHHHHHHHHHHHHHHH
Q 035707 123 LSRRCDQNRRRSQSDAAPPMSMHAVSLLVEAIFLKTKSLQGLGRFEEACQSCKVILDTVEH 183 (713)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~g~~~eA~~~~~~~l~~~~~ 183 (713)
+.++++..+.. -.+-+.+.|.++.++..+|+.+||++.|++.-+-+..
T Consensus 85 FNRRGEL~qde-------------GklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaE 132 (144)
T PF12968_consen 85 FNRRGELHQDE-------------GKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAE 132 (144)
T ss_dssp HHHH--TTSTH-------------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred Hhhcccccccc-------------chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 44444433321 2344567899999999999999999999987665433
No 294
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.75 E-value=0.018 Score=36.92 Aligned_cols=23 Identities=17% Similarity=0.421 Sum_probs=11.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 035707 605 WHSTGLLYEAKGLQQEALVSFRK 627 (713)
Q Consensus 605 ~~~lg~~~~~~g~~~eA~~~~~~ 627 (713)
|..+|.+|...|++++|+.+|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34445555555555555555555
No 295
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.72 E-value=0.076 Score=54.86 Aligned_cols=88 Identities=16% Similarity=0.163 Sum_probs=59.8
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 035707 588 EVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRL 667 (713)
Q Consensus 588 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~ 667 (713)
...|+.+....+.++..|........+.+.+.+-...|.+++..+|++++.|..-|.-.+..+.. .+.|+..+.++++.
T Consensus 91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~n-i~saRalflrgLR~ 169 (568)
T KOG2396|consen 91 VFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLN-IESARALFLRGLRF 169 (568)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccc-hHHHHHHHHHHhhc
Confidence 44566666666767777777666666666677777777777777777777777766666655552 23777777777777
Q ss_pred CCCCHHHHH
Q 035707 668 DRTNTTAWY 676 (713)
Q Consensus 668 ~p~~~~~~~ 676 (713)
+|+++..|.
T Consensus 170 npdsp~Lw~ 178 (568)
T KOG2396|consen 170 NPDSPKLWK 178 (568)
T ss_pred CCCChHHHH
Confidence 777776654
No 296
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.71 E-value=3.3 Score=43.38 Aligned_cols=107 Identities=12% Similarity=0.049 Sum_probs=82.9
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 035707 599 PYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNL 678 (713)
Q Consensus 599 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~l 678 (713)
|+....-..+-..+...|-+.+|...|.+...+-|-+...+..+..+-..+--.++.-++.+|+.++.-...+++.|...
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y 536 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDY 536 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 44444444555666777889999999999999988888777766665544443345589999999999888999999988
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHc-cccCC
Q 035707 679 GLLYKTYAGASALEAVECFEAAAL-LEESA 707 (713)
Q Consensus 679 g~~~~~~g~~~~~~A~~~~~~a~~-l~p~~ 707 (713)
-..-...|+ .+.+-..|.+|.+ ++|..
T Consensus 537 ~~~e~~~g~--~en~~~~~~ra~ktl~~~~ 564 (568)
T KOG2396|consen 537 MKEELPLGR--PENCGQIYWRAMKTLQGES 564 (568)
T ss_pred HHhhccCCC--cccccHHHHHHHHhhChhh
Confidence 777779999 9999999999987 45543
No 297
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.62 E-value=0.41 Score=41.52 Aligned_cols=99 Identities=17% Similarity=0.096 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 035707 568 METWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLR 647 (713)
Q Consensus 568 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~ 647 (713)
......+...-...++.+++...+..+--+.|+.+..-..-|.++...|+|++|+..++...+-.+..+.+.-.++.++.
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 34455555566669999999999999999999999999999999999999999999999999888888888889999999
Q ss_pred HhcCCChHHHHHHHHHHHhhCC
Q 035707 648 QIGGESMATIRCFLTDALRLDR 669 (713)
Q Consensus 648 ~~g~~~l~~A~~~~~~al~~~p 669 (713)
-+|+.+ =..+-..+++..+
T Consensus 90 al~Dp~---Wr~~A~~~le~~~ 108 (153)
T TIGR02561 90 AKGDAE---WHVHADEVLARDA 108 (153)
T ss_pred hcCChH---HHHHHHHHHHhCC
Confidence 999874 4445555555443
No 298
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.44 E-value=4.7 Score=43.34 Aligned_cols=75 Identities=9% Similarity=-0.027 Sum_probs=52.2
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcc-cCCCChHHHHHHHHH
Q 035707 290 LKKIVLGKIEWDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGE-ENSDCNLELLVASKI 364 (713)
Q Consensus 290 ~~~~~l~~~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~-~~p~~~~~~~~~a~~ 364 (713)
.....|...|-----|..-+.--.+.|..+.+.+.||+.+.+.+.....|.......... .+|..+.-.+..|..
T Consensus 67 ~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~ 142 (577)
T KOG1258|consen 67 VYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKS 142 (577)
T ss_pred HHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 445667777766666666777777889999999999999988888788887665444433 445555555555543
No 299
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.43 E-value=0.059 Score=51.90 Aligned_cols=76 Identities=21% Similarity=0.141 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 035707 570 TWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARV 645 (713)
Q Consensus 570 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~ 645 (713)
.-...+.-..+.|+.++|...|+.++.+.|.++.++..+|......++.-+|-.+|-+++.++|.+.+++.+.+..
T Consensus 118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 3334444556789999999999999999999999999999999999999999999999999999999988776543
No 300
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.42 E-value=0.2 Score=39.92 Aligned_cols=68 Identities=16% Similarity=0.031 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCc-hHHHHHHHHHHHHcCCHH
Q 035707 425 ALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSN-VKGYLLLARVLSAQKQFA 493 (713)
Q Consensus 425 A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~~la~~~~~~g~~~ 493 (713)
.+..+++.+ ..+|+|..+.+.+|..+...|++++|++.+-.+++.+++.. ..+...+-.++...|.-+
T Consensus 7 ~~~al~~~~-a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 7 DIAALEAAL-AANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHH-HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred cHHHHHHHH-HcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 467788889 99999999999999999999999999999999999887652 145555666665555543
No 301
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.40 E-value=3 Score=44.85 Aligned_cols=52 Identities=17% Similarity=0.214 Sum_probs=34.4
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 035707 574 LANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKA 628 (713)
Q Consensus 574 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~a 628 (713)
+..++...++|.+|....++.-+.- +++++..|.-+....+++||.+.|.+|
T Consensus 779 iVqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 779 LVQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred HhhheeecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 4455667788888877665543332 356666777777777777777777665
No 302
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.38 E-value=0.5 Score=50.85 Aligned_cols=110 Identities=14% Similarity=0.025 Sum_probs=65.0
Q ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 035707 566 LEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARV 645 (713)
Q Consensus 566 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~ 645 (713)
....+|.++|..+..+..|++|.++|.+.-. .-++..+++...++++-.. ....-|++.+.+-.+|..
T Consensus 794 ~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~LE~----la~~Lpe~s~llp~~a~m 861 (1189)
T KOG2041|consen 794 GKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGELEV----LARTLPEDSELLPVMADM 861 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhHHH----HHHhcCcccchHHHHHHH
Confidence 3456777888888877788888877766432 1234455555555555332 233346777777778888
Q ss_pred HHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 035707 646 LRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEA 699 (713)
Q Consensus 646 ~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~ 699 (713)
+...|.-+ +|.+.|-+. ..|. +- -.....+.+ |.+|.+.-++
T Consensus 862 f~svGMC~--qAV~a~Lr~--s~pk---aA---v~tCv~LnQ--W~~avelaq~ 903 (1189)
T KOG2041|consen 862 FTSVGMCD--QAVEAYLRR--SLPK---AA---VHTCVELNQ--WGEAVELAQR 903 (1189)
T ss_pred HHhhchHH--HHHHHHHhc--cCcH---HH---HHHHHHHHH--HHHHHHHHHh
Confidence 88888876 777665321 1222 11 123445566 6667665543
No 303
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.37 E-value=0.074 Score=37.34 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHH
Q 035707 442 YIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLA 483 (713)
Q Consensus 442 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la 483 (713)
+.+|.+|..+++.|+|++|..+.+.+++..|++. .+.....
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~-Qa~~L~~ 42 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR-QAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H-HHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH-HHHHHHH
Confidence 4577888888888888888888888888888887 5554433
No 304
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.37 E-value=0.029 Score=34.24 Aligned_cols=32 Identities=38% Similarity=0.465 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccC
Q 035707 673 TAWYNLGLLYKTYAGASALEAVECFEAAALLEES 706 (713)
Q Consensus 673 ~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~ 706 (713)
.+|+.+|.++...|+ +++|..+|++++++.|+
T Consensus 2 ~~~~~~a~~~~~~~~--~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGD--YDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhh--HHHHHHHHHHHHccCCC
Confidence 467888999999999 99999999999888775
No 305
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.36 E-value=4.2 Score=50.72 Aligned_cols=112 Identities=17% Similarity=0.102 Sum_probs=83.4
Q ss_pred CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHH
Q 035707 510 DQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEV 589 (713)
Q Consensus 510 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 589 (713)
..+..|...|++....|+++.|...+-.+.+..+ +.+....|..+...|+...|+.
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~------------------------~~i~~E~AK~lW~~gd~~~Al~ 1723 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESRL------------------------PEIVLERAKLLWQTGDELNALS 1723 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc------------------------chHHHHHHHHHHhhccHHHHHH
Confidence 3567899999999999999999888877766532 7889999999999999999999
Q ss_pred HHHHHHhcC-CC----------C------hhHHHHHHHHHHHcCCH--HHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 035707 590 CLSKSKAIN-PY----------S------ASGWHSTGLLYEAKGLQ--QEALVSFRKALDAEPNHVPSLVSIARV 645 (713)
Q Consensus 590 ~~~~al~~~-p~----------~------~~~~~~lg~~~~~~g~~--~eA~~~~~~al~~~p~~~~~~~~la~~ 645 (713)
.+++.++.+ |+ . ..+...++.-....+++ +.-++.|..+.++.|.....++.+|.-
T Consensus 1724 ~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~y 1798 (2382)
T KOG0890|consen 1724 VLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKY 1798 (2382)
T ss_pred HHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHH
Confidence 999999654 22 1 11233344444455543 456788999999999776666666633
No 306
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.30 E-value=0.26 Score=40.34 Aligned_cols=46 Identities=11% Similarity=0.034 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcc
Q 035707 656 TIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALL 703 (713)
Q Consensus 656 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l 703 (713)
.+++.+.++..+.|..+..++.+|.-+-...- |+++..--++++..
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~--Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKY--YKKAVKKAKRGLSV 107 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHH--HHHHHHHHHHHhcc
Confidence 57778888888888888888888887766666 88888777777764
No 307
>PRK10941 hypothetical protein; Provisional
Probab=95.23 E-value=0.19 Score=49.32 Aligned_cols=74 Identities=15% Similarity=0.091 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 035707 568 METWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVS 641 (713)
Q Consensus 568 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 641 (713)
.....++-.+|.+.++++.|+.+.+.++.+.|+++.-+.-.|.+|.+.|.+..|...++..++..|+++.+-.-
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 34455666778888888888888888888888888888888888888888888888888888888887765443
No 308
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.20 E-value=0.031 Score=37.10 Aligned_cols=39 Identities=26% Similarity=0.309 Sum_probs=26.4
Q ss_pred HHHHHhhhhhhccCchHHHHHHHHHHHHHHHHhcCCCCC
Q 035707 152 EAIFLKTKSLQGLGRFEEACQSCKVILDTVEHALPEGLP 190 (713)
Q Consensus 152 e~~~~~~~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~ 190 (713)
.++...|.+|..+|++++|...+++++.+.+..++.+.|
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hp 41 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHP 41 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhccccc
Confidence 456778999999999999999999999998888765555
No 309
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.16 E-value=2.4 Score=40.46 Aligned_cols=197 Identities=10% Similarity=0.032 Sum_probs=121.2
Q ss_pred CCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhC-----CCC-HH
Q 035707 369 KVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMR-----ERD-PY 442 (713)
Q Consensus 369 g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-----p~~-~~ 442 (713)
.+.. +|+.-|+++++ +.+....+-..++..+..++ .+.+++++-+..|.+.+ ..- .+. ..
T Consensus 41 ~~p~-~Al~sF~kVle-lEgEKgeWGFKALKQmiKI~-----------f~l~~~~eMm~~Y~qlL-TYIkSAVTrNySEK 106 (440)
T KOG1464|consen 41 DEPK-EALSSFQKVLE-LEGEKGEWGFKALKQMIKIN-----------FRLGNYKEMMERYKQLL-TYIKSAVTRNYSEK 106 (440)
T ss_pred cCHH-HHHHHHHHHHh-cccccchhHHHHHHHHHHHH-----------hccccHHHHHHHHHHHH-HHHHHHHhccccHH
Confidence 3566 99999999999 77777766677777888888 67777777777776665 321 111 11
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--hcCCchHHH----HHHHHHHHHcCCHHHHHHHHHHHhhccCC--------
Q 035707 443 IIYHLCLENAEQRKLDVALYYAKKLLNL--EARSNVKGY----LLLARVLSAQKQFADAESVINDSLDQTGK-------- 508 (713)
Q Consensus 443 ~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~-------- 508 (713)
....+-..-....+.+--...|+..++. +..+. ..| ..+|.+++..+.|..-.+++.+.-.....
T Consensus 107 sIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNe-RLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~k 185 (440)
T KOG1464|consen 107 SINSILDYISTSKNMDLLQEFYETTLDALKDAKNE-RLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQK 185 (440)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcc-eeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhh
Confidence 2222222222333444444444444432 22222 333 47899999999999888888776544211
Q ss_pred --CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccH-HHHHHHHHHHHHHCCCHH
Q 035707 509 --WDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLE-METWHDLANVYTSLSQWR 585 (713)
Q Consensus 509 --~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~ 585 (713)
..-.+++..-..+|..+.+-..-...|++++.+... ++ +|.. ..+.-.=|..+.+.|+|+
T Consensus 186 KGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSA----------------IP-HPlImGvIRECGGKMHlreg~fe 248 (440)
T KOG1464|consen 186 KGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSA----------------IP-HPLIMGVIRECGGKMHLREGEFE 248 (440)
T ss_pred ccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhcc----------------CC-chHHHhHHHHcCCccccccchHH
Confidence 012345666678888888888888899999887431 11 1222 222333456777888999
Q ss_pred HHHHHHHHHHhc
Q 035707 586 DAEVCLSKSKAI 597 (713)
Q Consensus 586 ~A~~~~~~al~~ 597 (713)
+|-.-|=++++-
T Consensus 249 ~AhTDFFEAFKN 260 (440)
T KOG1464|consen 249 KAHTDFFEAFKN 260 (440)
T ss_pred HHHhHHHHHHhc
Confidence 888777777654
No 310
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.13 E-value=4 Score=43.23 Aligned_cols=244 Identities=14% Similarity=0.104 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCc-hHHHHHHHHHHHHcCCHHHHHHHHHH
Q 035707 423 SQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSN-VKGYLLLARVLSAQKQFADAESVIND 501 (713)
Q Consensus 423 ~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~~la~~~~~~g~~~~A~~~~~~ 501 (713)
....+.+.... ...|+++...+..+..+...|+.+.|+..++..+...-... .-.++.+|.++.-+.+|.+|-..+..
T Consensus 250 ~~~~~~Ll~~~-~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~ 328 (546)
T KOG3783|consen 250 EECEKALKKYR-KRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDL 328 (546)
T ss_pred HHHHHHhHHHH-HhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 44555555555 77799998888899999999998889999988877111110 13566788899999999999999999
Q ss_pred HhhccCCCCcHHHHHHHHHHHH--------HhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh--cccC---CCccHH
Q 035707 502 SLDQTGKWDQGELLRTKAKLQI--------AQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKN--RQNH---DRSLEM 568 (713)
Q Consensus 502 al~~~p~~~~~~~~~~la~~~~--------~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~ 568 (713)
..+.+. |.....-+..|-++. ..|+-+.|-..++....+....+.....-....+. +... ..+...
T Consensus 329 L~desd-WS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~ 407 (546)
T KOG3783|consen 329 LRDESD-WSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASIL 407 (546)
T ss_pred HHhhhh-hhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccccccccc
Confidence 888764 444433333333332 23455555555554433322211111110000000 0000 000111
Q ss_pred H--HHHHHHHHHHHC--CCHHHHHHH--HHHHHhc-CCCCh-hHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CC---
Q 035707 569 E--TWHDLANVYTSL--SQWRDAEVC--LSKSKAI-NPYSA-SGWHSTGLLYEAKGLQQEALVSFRKALDAE---PN--- 634 (713)
Q Consensus 569 ~--~~~~la~~~~~~--g~~~~A~~~--~~~al~~-~p~~~-~~~~~lg~~~~~~g~~~eA~~~~~~al~~~---p~--- 634 (713)
. -++.++.++-.. ...++..+. -.+.-.. ++++. --+..+|.++...|+...|..+|..+++.. ..
T Consensus 408 la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w 487 (546)
T KOG3783|consen 408 LASPYYELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLW 487 (546)
T ss_pred ccchHHHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccc
Confidence 1 223444333321 222222211 1111122 23222 235678999999999999999999888421 11
Q ss_pred -CHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHhhCCC
Q 035707 635 -HVPSLVSIARVLRQIGG-ESMATIRCFLTDALRLDRT 670 (713)
Q Consensus 635 -~~~~~~~la~~~~~~g~-~~l~~A~~~~~~al~~~p~ 670 (713)
.|.+++.+|.++..+|. .. ++..++.+|-....+
T Consensus 488 ~~PfA~YElA~l~~~~~g~~~--e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 488 AVPFALYELALLYWDLGGGLK--EARALLLKAREYASD 523 (546)
T ss_pred cccHHHHHHHHHHHhcccChH--HHHHHHHHHHhhccc
Confidence 35789999999999998 54 999999999886644
No 311
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.95 E-value=0.49 Score=44.88 Aligned_cols=94 Identities=21% Similarity=0.193 Sum_probs=64.5
Q ss_pred hCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHH-------HHHHHHHHHhc
Q 035707 525 QGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRD-------AEVCLSKSKAI 597 (713)
Q Consensus 525 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-------A~~~~~~al~~ 597 (713)
...+++|++.|.-++-...-. .......+.++..+|++|...|+.+. |...|.++++.
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~---------------~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~ 154 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIK---------------KEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYEN 154 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHh---------------CCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 456788888888777653211 12223447888999999999998554 55555555543
Q ss_pred CCC------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 035707 598 NPY------SASGWHSTGLLYEAKGLQQEALVSFRKALDAEP 633 (713)
Q Consensus 598 ~p~------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 633 (713)
... ...+.+.+|.+..+.|++++|+.+|.+++....
T Consensus 155 e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 155 EDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred CcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 321 245778889999999999999999999887543
No 312
>PRK10941 hypothetical protein; Provisional
Probab=94.94 E-value=0.25 Score=48.44 Aligned_cols=76 Identities=9% Similarity=-0.048 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 035707 604 GWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLL 681 (713)
Q Consensus 604 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~ 681 (713)
...++-.+|...++++.|+.+.+..+.+.|+++.-+...|.+|.+.|.+. .|..-++..++..|+++.+-.....+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~--~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEH--VALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcH--HHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 45667778899999999999999999999999999999999999999997 99999999999999998776554444
No 313
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.87 E-value=7.7 Score=45.28 Aligned_cols=110 Identities=12% Similarity=0.017 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhh
Q 035707 357 ELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTM 436 (713)
Q Consensus 357 ~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 436 (713)
.++.....+.....|+ +|+..|+++.. .-|.-. .--.+.+.+|.....+....... ..+++|+..|++. .-
T Consensus 477 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~ 547 (932)
T PRK13184 477 SCLAVPDAFLAEKLYD-QALIFYRRIRE-SFPGRK-EGYEAQFRLGITLLEKASEQGDP----RDFTQALSEFSYL--HG 547 (932)
T ss_pred ecccCcHHHHhhHHHH-HHHHHHHHHhh-cCCCcc-cchHHHHHhhHHHHHHHHhcCCh----HHHHHHHHHHHHh--cC
Confidence 4455556677788889 99999999988 444322 12378888999887665542111 3678999999865 44
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCc
Q 035707 437 RERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSN 475 (713)
Q Consensus 437 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 475 (713)
.|.-|--+...|.+|.+.|++++-++++.-+++..|.++
T Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (932)
T PRK13184 548 GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHP 586 (932)
T ss_pred CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCC
Confidence 567788889999999999999999999999999999887
No 314
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.85 E-value=0.73 Score=40.76 Aligned_cols=82 Identities=11% Similarity=-0.119 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 035707 604 GWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYK 683 (713)
Q Consensus 604 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 683 (713)
.+..+..+-...++.+++...+.-.--+.|+.+..-..-|+++...|+++ +|+..|+.+.+..|..+.+--.++.++.
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~--dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWD--DALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHH--HHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 45555666677889999999999888899999999999999999999998 9999999999989999988888899988
Q ss_pred HhCC
Q 035707 684 TYAG 687 (713)
Q Consensus 684 ~~g~ 687 (713)
..|+
T Consensus 90 ~~~D 93 (160)
T PF09613_consen 90 ALGD 93 (160)
T ss_pred HcCC
Confidence 8887
No 315
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.69 E-value=0.1 Score=50.26 Aligned_cols=68 Identities=18% Similarity=0.167 Sum_probs=59.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 035707 610 LLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLG 679 (713)
Q Consensus 610 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg 679 (713)
.-..+.|+.++|...|+.++.+.|++++++..+|.......+.- +|-.+|-+|+.++|.+.+++.+.+
T Consensus 124 ~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv--~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 124 GRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIV--EADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhH--hhhhhhheeeeeCCCchHHHhhhh
Confidence 33456899999999999999999999999999999888777665 999999999999999998877654
No 316
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.57 E-value=0.065 Score=32.57 Aligned_cols=29 Identities=34% Similarity=0.421 Sum_probs=13.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 035707 605 WHSTGLLYEAKGLQQEALVSFRKALDAEP 633 (713)
Q Consensus 605 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p 633 (713)
+..+|.++...|++++|+..|+++++.+|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 34444444444444444444444444433
No 317
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.51 E-value=1.7 Score=35.88 Aligned_cols=102 Identities=16% Similarity=0.197 Sum_probs=67.0
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--
Q 035707 519 AKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKA-- 596 (713)
Q Consensus 519 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-- 596 (713)
+.-....|-|++|...++++.+....-+.. ..-...-.+.-++..|+..+..+|+|++++..-++++.
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~e----------EaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF 85 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPAE----------EAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF 85 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-TT----------S---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCChH----------hhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 445567789999999999999885432100 00001122466777899999999999998877777764
Q ss_pred -----cCCCChh----HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 035707 597 -----INPYSAS----GWHSTGLLYEAKGLQQEALVSFRKALD 630 (713)
Q Consensus 597 -----~~p~~~~----~~~~lg~~~~~~g~~~eA~~~~~~al~ 630 (713)
++.+... +.+..+..+...|+.++|+..|+.+-+
T Consensus 86 NRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 86 NRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 3444333 345677788888899999888887754
No 318
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=5.7 Score=39.50 Aligned_cols=296 Identities=13% Similarity=0.057 Sum_probs=160.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhh-hccCc----chHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHH
Q 035707 359 LVASKICAENKVCIEEGITYARKALSML-QGKCR----QMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAE 433 (713)
Q Consensus 359 ~~~a~~~~~~g~~~~~A~~~~~~al~~~-~~~~~----~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 433 (713)
+..+.......+.. +++..+..++... .+.+. .....+...+|..|...|+. ...++.-+...-|-..+
T Consensus 8 ~e~~~~~~~~~~~~-~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~-----~~lr~li~~~Rpf~~~v 81 (411)
T KOG1463|consen 8 LERAQNLVSVNQVE-EAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDA-----EELRDLITSLRPFLSSV 81 (411)
T ss_pred HHHHHHhcccchhh-hhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccch-----hHHHHHHHHHHHHHHHh
Confidence 33444455556666 8888888888721 12211 12346677888888555444 22222211111111111
Q ss_pred HhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhhcCCchH------HHHHHHHHHHHcCCHHHHHHHHHHHhhc-
Q 035707 434 KTMRERDPYIIYHLCLENA-EQRKLDVALYYAKKLLNLEARSNVK------GYLLLARVLSAQKQFADAESVINDSLDQ- 505 (713)
Q Consensus 434 ~~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~- 505 (713)
. .+......-.+...+. ..+..+.-+.....+++...... . .-..+..+|...++|.+|+......+..
T Consensus 82 -~-KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ek-RtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rEl 158 (411)
T KOG1463|consen 82 -S-KAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREK-RTFLRQSLEARLIRLYNDTKRYTEALALINDLLREL 158 (411)
T ss_pred -h-hHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 0 0111112222222222 12334455555555555433222 2 2345778899999999999888777654
Q ss_pred ---cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCc-cHHHHHHHHHHHHHHC
Q 035707 506 ---TGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRS-LEMETWHDLANVYTSL 581 (713)
Q Consensus 506 ---~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~ 581 (713)
+.+..-.+++..-...|....+..+|...+..+-..... ..-+| .....-..-|.++...
T Consensus 159 KKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~Ana----------------iYcpPqlQa~lDLqSGIlha~e 222 (411)
T KOG1463|consen 159 KKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANA----------------IYCPPQLQATLDLQSGILHAAE 222 (411)
T ss_pred HhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcc----------------cccCHHHHHHHHHhccceeecc
Confidence 222233455666678888888888888887776543210 11111 1233333446666777
Q ss_pred CCHHHHHHHHHHHHhcCC---CChhHHHHH---HHHHHHcCCHHHHHH--HHHHHHhcCCCCHHHHHHHHHHHHHhcCCC
Q 035707 582 SQWRDAEVCLSKSKAINP---YSASGWHST---GLLYEAKGLQQEALV--SFRKALDAEPNHVPSLVSIARVLRQIGGES 653 (713)
Q Consensus 582 g~~~~A~~~~~~al~~~p---~~~~~~~~l---g~~~~~~g~~~eA~~--~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 653 (713)
.+|.-|..+|-++++-.. .+..+...+ -.+-...+..++--. .-+.+++....+.++....+.++.+..-.+
T Consensus 223 kDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkd 302 (411)
T KOG1463|consen 223 KDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKD 302 (411)
T ss_pred cccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHH
Confidence 899999999998887432 123333222 222233455555433 334566777778888888888876654444
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 035707 654 MATIRCFLTDALRLDRTNTTAWYNLGLLY 682 (713)
Q Consensus 654 l~~A~~~~~~al~~~p~~~~~~~~lg~~~ 682 (713)
++.|+.-|..-+..+| .+..++..+|
T Consensus 303 F~~AL~~yk~eL~~D~---ivr~Hl~~Ly 328 (411)
T KOG1463|consen 303 FEKALADYKKELAEDP---IVRSHLQSLY 328 (411)
T ss_pred HHHHHHHhHHHHhcCh---HHHHHHHHHH
Confidence 4577777777666554 3444444443
No 319
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.41 E-value=0.6 Score=49.60 Aligned_cols=125 Identities=21% Similarity=0.108 Sum_probs=92.9
Q ss_pred CCHHHHHHHHHHHHhcCCCChhHHHH--HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHH
Q 035707 582 SQWRDAEVCLSKSKAINPYSASGWHS--TGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRC 659 (713)
Q Consensus 582 g~~~~A~~~~~~al~~~p~~~~~~~~--lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~ 659 (713)
+.-.-++..+...+.++|.++..+.. +...+...+....+.-.+..++..+|++..+..+++..+...|... ..+..
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~-~~~~~ 123 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQF-LALAD 123 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHH-HHHHH
Confidence 33333666666667777877776433 4666777788888888888899999999999999988887776654 24445
Q ss_pred HHHHHHhhCCCCHHHHHHH------HHHHHHhCCCCHHHHHHHHHHHHccccCCCC
Q 035707 660 FLTDALRLDRTNTTAWYNL------GLLYKTYAGASALEAVECFEAAALLEESAPV 709 (713)
Q Consensus 660 ~~~~al~~~p~~~~~~~~l------g~~~~~~g~~~~~~A~~~~~~a~~l~p~~~~ 709 (713)
..+.+....|++......+ +.....+|+ ..++....+++..+.|.+|.
T Consensus 124 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~l~~~~d~~p~~~~ 177 (620)
T COG3914 124 ISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGR--TAEAELALERAVDLLPKYPR 177 (620)
T ss_pred HHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhhhhhhh
Confidence 5555778888887765555 888888888 88999999998888888764
No 320
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.40 E-value=0.26 Score=34.59 Aligned_cols=33 Identities=15% Similarity=0.044 Sum_probs=14.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 035707 606 HSTGLLYEAKGLQQEALVSFRKALDAEPNHVPS 638 (713)
Q Consensus 606 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 638 (713)
+.++..+.+.|+|++|..+.+.+++.+|++..+
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 344444444444444444444444444444433
No 321
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.21 E-value=2.3 Score=37.04 Aligned_cols=74 Identities=19% Similarity=0.085 Sum_probs=59.1
Q ss_pred HHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCH
Q 035707 417 KRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQF 492 (713)
Q Consensus 417 ~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~ 492 (713)
...++.+++...+...- -+.|+.+..-..-|.++...|+|.+|+..++.+....+..+ .+--+++.|+..+|+.
T Consensus 21 L~~~d~~D~e~lLdALr-vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p-~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 21 LRSADPYDAQAMLDALR-VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPP-YGKALLALCLNAKGDA 94 (153)
T ss_pred HhcCCHHHHHHHHHHHH-HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCch-HHHHHHHHHHHhcCCh
Confidence 34567788888887776 88899999888899999999999999999999887776666 6667777777777654
No 322
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.04 E-value=0.091 Score=48.61 Aligned_cols=59 Identities=19% Similarity=0.331 Sum_probs=55.0
Q ss_pred HHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 035707 577 VYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNH 635 (713)
Q Consensus 577 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 635 (713)
.....++.+.|.+.|.+++++.|.....|+.+|....+.|+++.|.+.|++.++++|++
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 44567899999999999999999999999999999999999999999999999999875
No 323
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.87 E-value=0.65 Score=42.66 Aligned_cols=101 Identities=17% Similarity=0.113 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh--cCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcH----HH
Q 035707 441 PYIIYHLCLENAEQRKLDVALYYAKKLLNLE--ARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQG----EL 514 (713)
Q Consensus 441 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~----~~ 514 (713)
..++..+|..|.+.|+++.|++.|.++.+.. +++..+.+..+..+....+++.....++.++-.......+. .+
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 3578899999999999999999999987753 33334678888999999999999999999987664321222 23
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 035707 515 LRTKAKLQIAQGRLKNAIETYVNLLAV 541 (713)
Q Consensus 515 ~~~la~~~~~~g~~~~A~~~~~~~l~~ 541 (713)
....|..+...++|.+|.+.|-.+...
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 445567778889999999888776543
No 324
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.84 E-value=3.6 Score=44.30 Aligned_cols=213 Identities=15% Similarity=0.064 Sum_probs=109.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--------------hcCCchHHHHHHHHHHHHcCCHHHHHHHHHHH------h
Q 035707 444 IYHLCLENAEQRKLDVALYYAKKLLNL--------------EARSNVKGYLLLARVLSAQKQFADAESVINDS------L 503 (713)
Q Consensus 444 ~~~la~~~~~~g~~~~A~~~~~~~l~~--------------~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a------l 503 (713)
|-.++......=+++-|.+.|.++-.+ .... .--..+|.++..+|+|.+|.++|.+. +
T Consensus 588 W~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~--P~~iLlA~~~Ay~gKF~EAAklFk~~G~enRAl 665 (1081)
T KOG1538|consen 588 WRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGET--PNDLLLADVFAYQGKFHEAAKLFKRSGHENRAL 665 (1081)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC--chHHHHHHHHHhhhhHHHHHHHHHHcCchhhHH
Confidence 445555555555566666655554211 1111 22346788888899999998888763 2
Q ss_pred hccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCC
Q 035707 504 DQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQ 583 (713)
Q Consensus 504 ~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 583 (713)
+... + --.+..+.-++..|..++-....++--+-..+ ...+. .-+..+...|+
T Consensus 666 EmyT---D-lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~--------------------~kePk---aAAEmLiSaGe 718 (1081)
T KOG1538|consen 666 EMYT---D-LRMFDYAQEFLGSGDPKEKKMLIRKRADWARN--------------------IKEPK---AAAEMLISAGE 718 (1081)
T ss_pred HHHH---H-HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhh--------------------cCCcH---HHHHHhhcccc
Confidence 2221 0 11344555566666665555444432221110 00111 23556666777
Q ss_pred HHHHHHHHH----------HHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCC
Q 035707 584 WRDAEVCLS----------KSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGES 653 (713)
Q Consensus 584 ~~~A~~~~~----------~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 653 (713)
.++|+...- -+-+++....+.+..++..+.....+.-|.+.|.+.=. ...+..++...++++
T Consensus 719 ~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~ 790 (1081)
T KOG1538|consen 719 HVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWD 790 (1081)
T ss_pred hhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccch
Confidence 777765431 12223333344444555555555555566666654321 123445566667776
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 035707 654 MATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAA 700 (713)
Q Consensus 654 l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a 700 (713)
+|....++--+.-| .+++-.|.-+....+ ++||.+.|.+|
T Consensus 791 --eAFalAe~hPe~~~---dVy~pyaqwLAE~Dr--FeEAqkAfhkA 830 (1081)
T KOG1538|consen 791 --EAFALAEKHPEFKD---DVYMPYAQWLAENDR--FEEAQKAFHKA 830 (1081)
T ss_pred --HhHhhhhhCccccc---cccchHHHHhhhhhh--HHHHHHHHHHh
Confidence 77666544333322 355556666666666 66666666554
No 325
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.64 E-value=1.4 Score=41.91 Aligned_cols=80 Identities=13% Similarity=-0.014 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHH
Q 035707 512 GELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCL 591 (713)
Q Consensus 512 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 591 (713)
+.++..+|.+|...|+.+.....+++++.........- ...........+.+.+|.+..+.|++++|...|
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e---------~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~f 188 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENE---------DFPIEGMDEATLLYLIGELNRRLGNYDEAKRWF 188 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhC---------cCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 45667777888888876666666666655543221100 011122345778899999999999999999999
Q ss_pred HHHHhcCCC
Q 035707 592 SKSKAINPY 600 (713)
Q Consensus 592 ~~al~~~p~ 600 (713)
.+++.....
T Consensus 189 s~vi~~~~~ 197 (214)
T PF09986_consen 189 SRVIGSKKA 197 (214)
T ss_pred HHHHcCCCC
Confidence 999976543
No 326
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.60 E-value=0.067 Score=31.25 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=22.0
Q ss_pred HHHHHhhhHhhhcCCHHHHHhhhh
Q 035707 85 EARALLGRLEFQKGNIEAALHVFE 108 (713)
Q Consensus 85 ~a~~llg~~~~~~g~~~~Al~~~~ 108 (713)
.+++.||.+++.+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 578899999999999999999886
No 327
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.43 E-value=4.4 Score=41.44 Aligned_cols=127 Identities=17% Similarity=0.170 Sum_probs=98.5
Q ss_pred CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC---ChHHH
Q 035707 583 QWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKG--LQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGE---SMATI 657 (713)
Q Consensus 583 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~---~l~~A 657 (713)
-+++-+.+...+++.+|++..+|+.+..++.+.+ ++..=++..+++++.+|.+..+|...-.+....... . .+=
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~-~~E 168 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLE-KEE 168 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccc-hhH
Confidence 4667778888899999999999999999998776 468889999999999999999988877776665444 4 366
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHH------hCC----CCHHHHHHHHHHHHccccCCCCC
Q 035707 658 RCFLTDALRLDRTNTTAWYNLGLLYKT------YAG----ASALEAVECFEAAALLEESAPVE 710 (713)
Q Consensus 658 ~~~~~~al~~~p~~~~~~~~lg~~~~~------~g~----~~~~~A~~~~~~a~~l~p~~~~~ 710 (713)
+.+..+++..++.|..+|.+...++.. .|+ .-...-++.-..|+-.+|+|+..
T Consensus 169 l~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~ 231 (421)
T KOG0529|consen 169 LEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSC 231 (421)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccce
Confidence 788899999999999999998887763 220 01233455666677778887754
No 328
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=93.25 E-value=0.12 Score=50.04 Aligned_cols=77 Identities=9% Similarity=0.098 Sum_probs=37.9
Q ss_pred CccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 035707 564 RSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHS-TGLLYEAKGLQQEALVSFRKALDAEPNHVPSLV 640 (713)
Q Consensus 564 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 640 (713)
.+.++..|...+..-.+.|-+.+--..|.+++...|.+++.|.. -+.-+...++.+.+...|.++++.+|+++..|.
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 34445555555544444455555555555555555555555443 223334445555555555555555555554443
No 329
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=93.24 E-value=8.5 Score=37.28 Aligned_cols=206 Identities=12% Similarity=0.018 Sum_probs=116.5
Q ss_pred HHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHhcCCChHHHHHH---HHHHHHh
Q 035707 309 SFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICAENKVCIEEGITY---ARKALSM 385 (713)
Q Consensus 309 ~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~~A~~~---~~~al~~ 385 (713)
+.-..+.++++++...+.+++.......+. .......+.+.+++++...|++. .-.+. .+.+...
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek-----------~~nEqE~tvlel~~lyv~~g~~~-~l~~~i~~sre~m~~ 77 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEK-----------TLNEQEATVLELFKLYVSKGDYC-SLGDTITSSREAMED 77 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhh-----------hhhHHHHHHHHHHHHHHhcCCcc-hHHHHHHhhHHHHHH
Confidence 334456677888888888877653322211 01123456788889999998887 33322 2222221
Q ss_pred h-hccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHH
Q 035707 386 L-QGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERD------PYIIYHLCLENAEQRKLD 458 (713)
Q Consensus 386 ~-~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~------~~~~~~la~~~~~~g~~~ 458 (713)
. .|... .....|-..+. .....++.-+..+...+ +..... ...-..++..+++.|+|.
T Consensus 78 ftk~k~~----KiirtLiekf~----------~~~dsl~dqi~v~~~~i-ewA~rEkr~fLr~~Le~Kli~l~y~~~~Ys 142 (421)
T COG5159 78 FTKPKIT----KIIRTLIEKFP----------YSSDSLEDQIKVLTALI-EWADREKRKFLRLELECKLIYLLYKTGKYS 142 (421)
T ss_pred hcchhHH----HHHHHHHHhcC----------CCCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 1 11111 22222222221 11223344444444444 222111 112345788899999999
Q ss_pred HHHHHHHHHHhhh------cCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc-----CCCCcHHHHHHHHHHHHHhCC
Q 035707 459 VALYYAKKLLNLE------ARSNVKGYLLLARVLSAQKQFADAESVINDSLDQT-----GKWDQGELLRTKAKLQIAQGR 527 (713)
Q Consensus 459 ~A~~~~~~~l~~~------p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~la~~~~~~g~ 527 (713)
+|+......+..- |.-. .++..-..+|....+..++...+..+-... |...+..+-..-|.+.+...+
T Consensus 143 dalalIn~ll~ElKk~DDK~~Li-~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~d 221 (421)
T COG5159 143 DALALINPLLHELKKYDDKINLI-TVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRD 221 (421)
T ss_pred HHHHHHHHHHHHHHhhcCcccee-ehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeecccc
Confidence 9999887776421 2223 567777888888888888888777765442 311122233344566677788
Q ss_pred HHHHHHHHHHHHHHH
Q 035707 528 LKNAIETYVNLLAVL 542 (713)
Q Consensus 528 ~~~A~~~~~~~l~~~ 542 (713)
|..|-.+|-.+++-.
T Consensus 222 yktA~SYF~Ea~Egf 236 (421)
T COG5159 222 YKTASSYFIEALEGF 236 (421)
T ss_pred chhHHHHHHHHHhcc
Confidence 999999998888753
No 330
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.17 E-value=0.11 Score=47.96 Aligned_cols=60 Identities=15% Similarity=0.255 Sum_probs=44.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCH
Q 035707 611 LYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNT 672 (713)
Q Consensus 611 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~ 672 (713)
.....++.+.|.+.|.+++.+.|+....|+.+|....+.|+++ .|...|++.++++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~d--aAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFD--AAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHH--HHHHHHHHHHcCCcccc
Confidence 3445677777777777777777777777777777777777776 77777777777777654
No 331
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.10 E-value=1.5 Score=40.28 Aligned_cols=104 Identities=9% Similarity=-0.042 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 035707 477 KGYLLLARVLSAQKQFADAESVINDSLDQTGKW-DQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNL 555 (713)
Q Consensus 477 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 555 (713)
.++..+|..|.+.|+.++|++.|.++.+....+ .....+..+.++....+++........++-......
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~---------- 106 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKG---------- 106 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc----------
Confidence 588899999999999999999999988875322 234577889999999999999999999887763321
Q ss_pred hhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 035707 556 VKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKA 596 (713)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 596 (713)
.+..........-|..++..++|..|...|-.+..
T Consensus 107 ------~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 107 ------GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred ------chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 00111122333445556667777777777766543
No 332
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=93.10 E-value=1.1 Score=52.29 Aligned_cols=172 Identities=14% Similarity=0.069 Sum_probs=128.0
Q ss_pred HHHHHHHHHHcCCHHHHHH------HHHHHH-hhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc------CCCC
Q 035707 444 IYHLCLENAEQRKLDVALY------YAKKLL-NLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQT------GKWD 510 (713)
Q Consensus 444 ~~~la~~~~~~g~~~~A~~------~~~~~l-~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~ 510 (713)
....+......|.+.+|.+ .+.... .+.|... ..+..++.++...++.++|+..-.++.-+. ..++
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~-~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~ 1013 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVA-SKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN 1013 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHH-HHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH
Confidence 4556667777788887777 444322 3456666 889999999999999999999988876543 1124
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHH
Q 035707 511 QGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVC 590 (713)
Q Consensus 511 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 590 (713)
....+..++......++...|...+.++....--. ..+++|.......+++.++...++++.|+.+
T Consensus 1014 t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls--------------~ge~hP~~a~~~~nle~l~~~v~e~d~al~~ 1079 (1236)
T KOG1839|consen 1014 TKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLS--------------SGEDHPPTALSFINLELLLLGVEEADTALRY 1079 (1236)
T ss_pred HHHHhhHHHHHHHhccCccchhhhHHHHHHhhccc--------------cCCCCCchhhhhhHHHHHHhhHHHHHHHHHH
Confidence 56677888888888899999999999888764211 2335677788888999999999999999999
Q ss_pred HHHHHhcCC-----C---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 035707 591 LSKSKAINP-----Y---SASGWHSTGLLYEAKGLQQEALVSFRKALD 630 (713)
Q Consensus 591 ~~~al~~~p-----~---~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 630 (713)
.+.+.+... . ....+..++.++...+++..|+...+....
T Consensus 1080 le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1080 LESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred HHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 999987542 1 244567778888888887777776665554
No 333
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=92.74 E-value=1 Score=38.17 Aligned_cols=75 Identities=17% Similarity=0.088 Sum_probs=43.6
Q ss_pred ChhHHHHHHHHHHHcC---CHHHHHHHHHHHHh-cCCC-CHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHH
Q 035707 601 SASGWHSTGLLYEAKG---LQQEALVSFRKALD-AEPN-HVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAW 675 (713)
Q Consensus 601 ~~~~~~~lg~~~~~~g---~~~eA~~~~~~al~-~~p~-~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~ 675 (713)
+....+++++++.... +..+.+.+++..++ -.|. .-+..+.|+..+.+.++|+ .++.+.+..++.+|+|..+.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~--~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYS--KSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHH--HHHHHHHHHHhhCCCcHHHH
Confidence 3445566666655443 34455666666664 3332 2355666666666666665 66666666666666666654
Q ss_pred HH
Q 035707 676 YN 677 (713)
Q Consensus 676 ~~ 677 (713)
..
T Consensus 109 ~L 110 (149)
T KOG3364|consen 109 EL 110 (149)
T ss_pred HH
Confidence 43
No 334
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=92.63 E-value=2.1 Score=50.21 Aligned_cols=172 Identities=13% Similarity=0.099 Sum_probs=126.9
Q ss_pred hHHHHHHHHHHHhcCCChHHHHH------HHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHH
Q 035707 355 NLELLVASKICAENKVCIEEGIT------YARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVA 428 (713)
Q Consensus 355 ~~~~~~~a~~~~~~g~~~~~A~~------~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~ 428 (713)
..-....++.+...+.+. +|.+ ++.+....+.|... ..+..|+..+ .+.++.++|+..
T Consensus 932 a~~~~e~gq~~~~e~~~~-~~~~~~~slnl~~~v~~~~h~~~~----~~~~~La~l~-----------~~~~d~~~Ai~~ 995 (1236)
T KOG1839|consen 932 AKDSPEQGQEALLEDGFS-EAYELPESLNLLNNVMGVLHPEVA----SKYRSLAKLS-----------NRLGDNQEAIAQ 995 (1236)
T ss_pred hhhhhhhhhhhhcccchh-hhhhhhhhhhHHHHhhhhcchhHH----HHHHHHHHHH-----------hhhcchHHHHHh
Confidence 445566677778888888 7777 55555554556655 8888899998 788888999888
Q ss_pred HHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh-----cCCch--HHHHHHHHHHHHcCCHH
Q 035707 429 LETAEKTMR--------ERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLE-----ARSNV--KGYLLLARVLSAQKQFA 493 (713)
Q Consensus 429 ~~~al~~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~--~~~~~la~~~~~~g~~~ 493 (713)
-.++. -+. |+....+.+++...+..++...|+..+.++..+. |+++. .....+..++...++++
T Consensus 996 ~~ka~-ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d 1074 (1236)
T KOG1839|consen 996 QRKAC-IISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEAD 1074 (1236)
T ss_pred cccce-eeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHH
Confidence 77665 432 4556778889999999999999999999887642 32331 45678888888899999
Q ss_pred HHHHHHHHHhhccC------CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 035707 494 DAESVINDSLDQTG------KWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQ 543 (713)
Q Consensus 494 ~A~~~~~~al~~~p------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 543 (713)
.|+.+.+.|+.... .-.....+..+++++...+++..|+...+....+.+
T Consensus 1075 ~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~ 1130 (1236)
T KOG1839|consen 1075 TALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYK 1130 (1236)
T ss_pred HHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHH
Confidence 99999999988641 112345667778888888888888877777766654
No 335
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=92.58 E-value=12 Score=37.12 Aligned_cols=191 Identities=19% Similarity=0.176 Sum_probs=99.0
Q ss_pred HHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHH
Q 035707 417 KRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAE 496 (713)
Q Consensus 417 ~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~ 496 (713)
.+..+..+-++.-..++ .++|....++..++..-. .-..+|.+.++++++..... +........+|...+|.
T Consensus 195 WRERnp~~RI~~A~~AL-eIN~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e~~-----yr~sqq~qh~~~~~da~ 266 (556)
T KOG3807|consen 195 WRERNPPARIKAAYQAL-EINNECATAYVLLAEEEA--TTIVDAERLFKQALKAGETI-----YRQSQQCQHQSPQHEAQ 266 (556)
T ss_pred HHhcCcHHHHHHHHHHH-hcCchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHHHH-----HhhHHHHhhhccchhhh
Confidence 34455556666667777 777777777766655332 23566777777777643221 11222222222222221
Q ss_pred HHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHH
Q 035707 497 SVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLAN 576 (713)
Q Consensus 497 ~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 576 (713)
...+.. -...+...++.+..++|+..+|++.++.+.+..|-. ....++-++..
T Consensus 267 ------~rRDtn-vl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~--------------------t~lniheNLiE 319 (556)
T KOG3807|consen 267 ------LRRDTN-VLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLL--------------------TMLNIHENLLE 319 (556)
T ss_pred ------hhcccc-hhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHH--------------------HHHHHHHHHHH
Confidence 111210 133455678888899999999999998877664421 11334445555
Q ss_pred HHHHCCCHHHHHHHHHHHHhcC-CCChhHHHHHHHH-------------HHHcCC---HHHHHHHHHHHHhcCCCCHHHH
Q 035707 577 VYTSLSQWRDAEVCLSKSKAIN-PYSASGWHSTGLL-------------YEAKGL---QQEALVSFRKALDAEPNHVPSL 639 (713)
Q Consensus 577 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~-------------~~~~g~---~~eA~~~~~~al~~~p~~~~~~ 639 (713)
.+....-|.+....+-+.-++. |.++...+.-+.+ -.+.|- -..|++...++++.+|.-+..+
T Consensus 320 alLE~QAYADvqavLakYDdislPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYL 399 (556)
T KOG3807|consen 320 ALLELQAYADVQAVLAKYDDISLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYL 399 (556)
T ss_pred HHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHH
Confidence 5555444444444333332222 3333322221111 112221 2357788888888888766654
Q ss_pred HHH
Q 035707 640 VSI 642 (713)
Q Consensus 640 ~~l 642 (713)
..+
T Consensus 400 LE~ 402 (556)
T KOG3807|consen 400 LEM 402 (556)
T ss_pred HHH
Confidence 443
No 336
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.55 E-value=6 Score=42.24 Aligned_cols=127 Identities=20% Similarity=0.166 Sum_probs=60.5
Q ss_pred HcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHH
Q 035707 453 EQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAI 532 (713)
Q Consensus 453 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~ 532 (713)
..++++++....+.. ++-|.-+..-...++..+.++|.++.|+... .++...+ .+..+.|+.+.|.
T Consensus 273 ~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~----------~D~~~rF---eLAl~lg~L~~A~ 338 (443)
T PF04053_consen 273 LRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV----------TDPDHRF---ELALQLGNLDIAL 338 (443)
T ss_dssp HTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS----------S-HHHHH---HHHHHCT-HHHHH
T ss_pred HcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc----------CChHHHh---HHHHhcCCHHHHH
Confidence 355666655544311 1223323244555666666666666665544 2333333 2335666666665
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 035707 533 ETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLY 612 (713)
Q Consensus 533 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 612 (713)
+..++ ..+...|..||...+..|+++-|+.+|+++-. +..+..+|
T Consensus 339 ~~a~~---------------------------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy 383 (443)
T PF04053_consen 339 EIAKE---------------------------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLY 383 (443)
T ss_dssp HHCCC---------------------------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHH
T ss_pred HHHHh---------------------------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHH
Confidence 54332 12355777777777777777777777776432 33445556
Q ss_pred HHcCCHHHHHHHHHHH
Q 035707 613 EAKGLQQEALVSFRKA 628 (713)
Q Consensus 613 ~~~g~~~eA~~~~~~a 628 (713)
...|+.+.=.+..+.+
T Consensus 384 ~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 384 SSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHCT-HHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHH
Confidence 6666654433333333
No 337
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.49 E-value=5.8 Score=42.35 Aligned_cols=153 Identities=11% Similarity=0.010 Sum_probs=82.0
Q ss_pred HhcHHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHH
Q 035707 419 ILKQSQALVALETAEKTMRERD-PYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAES 497 (713)
Q Consensus 419 ~~~~~~A~~~~~~al~~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~ 497 (713)
.++++++....... .+-|.- ..-...++..+.++|.++.|+...+ ++ ...+.| ..+.|+++.|.+
T Consensus 274 ~~d~~~v~~~i~~~--~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~--------D~-~~rFeL---Al~lg~L~~A~~ 339 (443)
T PF04053_consen 274 RGDFEEVLRMIAAS--NLLPNIPKDQGQSIARFLEKKGYPELALQFVT--------DP-DHRFEL---ALQLGNLDIALE 339 (443)
T ss_dssp TT-HHH-----HHH--HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS---------H-HHHHHH---HHHCT-HHHHHH
T ss_pred cCChhhhhhhhhhh--hhcccCChhHHHHHHHHHHHCCCHHHHHhhcC--------Ch-HHHhHH---HHhcCCHHHHHH
Confidence 46667766665422 223333 3345556677777888887776432 23 443333 467788888876
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHH
Q 035707 498 VINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANV 577 (713)
Q Consensus 498 ~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 577 (713)
..+.. ++...|..+|.....+|+++-|.+.|+++-. +..|..+
T Consensus 340 ~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d------------------------------~~~L~lL 382 (443)
T PF04053_consen 340 IAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAKD------------------------------FSGLLLL 382 (443)
T ss_dssp HCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------------------------------HHHHHHH
T ss_pred HHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC------------------------------ccccHHH
Confidence 65432 4677888999999999999998888887433 3345666
Q ss_pred HHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 035707 578 YTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRK 627 (713)
Q Consensus 578 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 627 (713)
|...|+-+.=.+..+.+..... ++..-.++...|+.++.+..+.+
T Consensus 383 y~~~g~~~~L~kl~~~a~~~~~-----~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 383 YSSTGDREKLSKLAKIAEERGD-----INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHCT-HHHHHHHHHHHHHTT------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHccC-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 6777776555555444443322 11112233445666666655543
No 338
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.45 E-value=15 Score=38.10 Aligned_cols=134 Identities=12% Similarity=-0.006 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 035707 569 ETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLL-YEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLR 647 (713)
Q Consensus 569 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~ 647 (713)
-+|..+...-.+..-.+.|...|-++-+..-....++..-|.+ +...|++.-|-..|+-.+...|+++......-..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi 477 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLI 477 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 3444444555555667888888888876553344444444443 566899999999999999999998876666666777
Q ss_pred HhcCCChHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccC
Q 035707 648 QIGGESMATIRCFLTDALRLDRTN--TTAWYNLGLLYKTYAGASALEAVECFEAAALLEES 706 (713)
Q Consensus 648 ~~g~~~l~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~ 706 (713)
..++-. .|...|++++..-... ..+|-.+..--..-|+ ...+...=++..++.|.
T Consensus 478 ~inde~--naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~--lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 478 RINDEE--NARALFETSVERLEKTQLKRIYDKMIEYESMVGS--LNNVYSLEERFRELVPQ 534 (660)
T ss_pred HhCcHH--HHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcc--hHHHHhHHHHHHHHcCc
Confidence 778766 8999999877643222 3455555555555677 66666655555555553
No 339
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.44 E-value=0.77 Score=47.28 Aligned_cols=123 Identities=8% Similarity=-0.063 Sum_probs=80.9
Q ss_pred HCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHH
Q 035707 580 SLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRC 659 (713)
Q Consensus 580 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~ 659 (713)
..|+...|-.-+..++...|.+|......+.+....|.|+.+...+..+-..-.....+...+-..+...|+++ +|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~--~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWR--EALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHH--HHHH
Confidence 45677777777777777777777777777777777787777777665544433333344445555566677776 7777
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccC
Q 035707 660 FLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALLEES 706 (713)
Q Consensus 660 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~ 706 (713)
...-.+...-.++++...-+..-..+|- ++++..++++.+.++|.
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~--~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQL--FDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhH--HHHHHHHHHHHhccCCh
Confidence 7666665555556655555555556677 77777777777777654
No 340
>PF13041 PPR_2: PPR repeat family
Probab=92.41 E-value=0.42 Score=33.15 Aligned_cols=41 Identities=17% Similarity=0.027 Sum_probs=34.7
Q ss_pred HHHhHHHHHhcCChhHHHHHHHHHhcccCCCChhHHHHHHH
Q 035707 207 VELLPELYKLAGDPDETILSYRRALLYYWNLDIETTARIEK 247 (713)
Q Consensus 207 ~~~l~~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~i~~ 247 (713)
+..+-..|.+.|++++|...|++|.+.+..||..++..+-.
T Consensus 6 yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~ 46 (50)
T PF13041_consen 6 YNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILIN 46 (50)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34455779999999999999999999999999999876543
No 341
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=92.36 E-value=12 Score=40.33 Aligned_cols=79 Identities=18% Similarity=0.087 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHH-HHhcCCCChhHHHH------HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 035707 568 METWHDLANVYTSLSQWRDAEVCLSK-SKAINPYSASGWHS------TGLLYEAKGLQQEALVSFRKALDAEPNHVPSLV 640 (713)
Q Consensus 568 ~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~~------lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 640 (713)
+.+..+|+......|....+...+.. +....|.+...... ++......|+..++.....++..+.|.++....
T Consensus 101 ~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~ 180 (620)
T COG3914 101 CPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLG 180 (620)
T ss_pred chHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHh
Confidence 55555555555555544444433333 55555555443333 366666666666666666666666666655444
Q ss_pred HHHHHH
Q 035707 641 SIARVL 646 (713)
Q Consensus 641 ~la~~~ 646 (713)
.+....
T Consensus 181 ~~~~~r 186 (620)
T COG3914 181 ALMTAR 186 (620)
T ss_pred HHHHHH
Confidence 444443
No 342
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=92.08 E-value=13 Score=36.70 Aligned_cols=134 Identities=15% Similarity=0.044 Sum_probs=76.5
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHH
Q 035707 363 KICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPY 442 (713)
Q Consensus 363 ~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~ 442 (713)
.......+.. +-++....+++ ++|++. .++.+|+.-- ..-..+|...|++++ +.. +
T Consensus 192 Q~AWRERnp~-~RI~~A~~ALe-IN~eCA----~AyvLLAEEE-------------a~Ti~~AE~l~k~AL-ka~----e 247 (556)
T KOG3807|consen 192 QKAWRERNPP-ARIKAAYQALE-INNECA----TAYVLLAEEE-------------ATTIVDAERLFKQAL-KAG----E 247 (556)
T ss_pred HHHHHhcCcH-HHHHHHHHHHh-cCchhh----hHHHhhhhhh-------------hhhHHHHHHHHHHHH-HHH----H
Confidence 3444555666 77888888888 788887 7887776543 334567888888887 332 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHH
Q 035707 443 IIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQ 522 (713)
Q Consensus 443 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~ 522 (713)
..+........+|...+|. .+.+-+-....-..++.|..++|+..+|.+.++...+..|-..-..++-++...+
T Consensus 248 ~~yr~sqq~qh~~~~~da~------~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEal 321 (556)
T KOG3807|consen 248 TIYRQSQQCQHQSPQHEAQ------LRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEAL 321 (556)
T ss_pred HHHhhHHHHhhhccchhhh------hhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHH
Confidence 3333333333444333332 1222221113445677888888888888888888776665222223334444444
Q ss_pred HHhC
Q 035707 523 IAQG 526 (713)
Q Consensus 523 ~~~g 526 (713)
....
T Consensus 322 LE~Q 325 (556)
T KOG3807|consen 322 LELQ 325 (556)
T ss_pred HHHH
Confidence 4433
No 343
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=92.07 E-value=0.38 Score=50.12 Aligned_cols=103 Identities=16% Similarity=-0.001 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 035707 567 EMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAK---GLQQEALVSFRKALDAEPNHVPSLVSIA 643 (713)
Q Consensus 567 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~~eA~~~~~~al~~~p~~~~~~~~la 643 (713)
..+....-|.--+..+.+..|+..|.+++...|.....+.+.+.++.+. |+.-.|+.....+++++|....+++.|+
T Consensus 373 ~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la 452 (758)
T KOG1310|consen 373 NIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLA 452 (758)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHH
Confidence 3444444444444455667777777777777777777777777776654 3555666667777777777777777777
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhhCCCC
Q 035707 644 RVLRQIGGESMATIRCFLTDALRLDRTN 671 (713)
Q Consensus 644 ~~~~~~g~~~l~~A~~~~~~al~~~p~~ 671 (713)
.++...+++. +|+.+...+....|.+
T Consensus 453 ~aL~el~r~~--eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 453 RALNELTRYL--EALSCHWALQMSFPTD 478 (758)
T ss_pred HHHHHHhhHH--HhhhhHHHHhhcCchh
Confidence 7777777776 7777766655556644
No 344
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=91.98 E-value=13 Score=36.17 Aligned_cols=284 Identities=11% Similarity=0.033 Sum_probs=146.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhccC---cchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHh
Q 035707 359 LVASKICAENKVCIEEGITYARKALSMLQGKC---RQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKT 435 (713)
Q Consensus 359 ~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~---~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 435 (713)
+.+|.-..+..++. +|+..|.+++......+ ......+...++..|...|++.. .|++ +...+.+. .
T Consensus 7 le~a~~~v~~~~~~-~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~-----l~~~---i~~sre~m-~ 76 (421)
T COG5159 7 LELANNAVKSNDIE-KAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCS-----LGDT---ITSSREAM-E 76 (421)
T ss_pred HHHHHHhhhhhhHH-HHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcch-----HHHH---HHhhHHHH-H
Confidence 55667777888999 99999999987322211 12234677889999977776622 2211 11111111 0
Q ss_pred h--CCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhhcCCc-----hHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--
Q 035707 436 M--RERDPYIIYHLCLEN-AEQRKLDVALYYAKKLLNLEARSN-----VKGYLLLARVLSAQKQFADAESVINDSLDQ-- 505 (713)
Q Consensus 436 ~--~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~-- 505 (713)
. .|....+...+..-+ .....++.-+..+...++...... ...-..+..+++..|+|.+|+......+..
T Consensus 77 ~ftk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElK 156 (421)
T COG5159 77 DFTKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELK 156 (421)
T ss_pred HhcchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 0 011111221121111 112344455555555544322211 012345677889999999999988777644
Q ss_pred --cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccH--HHHHHHHHHHHHHC
Q 035707 506 --TGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLE--METWHDLANVYTSL 581 (713)
Q Consensus 506 --~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~la~~~~~~ 581 (713)
+.++.-..++..-..+|....+..++...+..+-..... . --|.. ++.-..-|...+..
T Consensus 157 k~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans----------------~-YCPpqlqa~lDL~sGIlhcdd 219 (421)
T COG5159 157 KYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANS----------------A-YCPPQLQAQLDLLSGILHCDD 219 (421)
T ss_pred hhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhc----------------c-CCCHHHHHHHHHhccceeecc
Confidence 333344556777778888888888887777766543211 0 01211 22223335556667
Q ss_pred CCHHHHHHHHHHHHhcCC---CChhHHHHHHHHH---HHcCCHHHHHHHHH--HHHh-cCCCCHHHHHHHHHHHHHhcCC
Q 035707 582 SQWRDAEVCLSKSKAINP---YSASGWHSTGLLY---EAKGLQQEALVSFR--KALD-AEPNHVPSLVSIARVLRQIGGE 652 (713)
Q Consensus 582 g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~---~~~g~~~eA~~~~~--~al~-~~p~~~~~~~~la~~~~~~g~~ 652 (713)
.+|.-|-.+|-++++-.. .+..+...+-.+. ...+..++-...++ ..++ .+.....+....+..+....-.
T Consensus 220 ~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~ 299 (421)
T COG5159 220 RDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLK 299 (421)
T ss_pred ccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHh
Confidence 788888888888876432 2333322222111 12233333332221 2222 2334455666666655433322
Q ss_pred ChHHHHHHHHHHHhhCC
Q 035707 653 SMATIRCFLTDALRLDR 669 (713)
Q Consensus 653 ~l~~A~~~~~~al~~~p 669 (713)
++..|+.-|..-+..+|
T Consensus 300 df~~aL~qY~~el~~D~ 316 (421)
T COG5159 300 DFSDALAQYSDELHQDS 316 (421)
T ss_pred hHHHHHHHhhHHhccCH
Confidence 33366666665554444
No 345
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.66 E-value=5.1 Score=39.43 Aligned_cols=64 Identities=16% Similarity=0.243 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 035707 568 METWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDA 631 (713)
Q Consensus 568 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 631 (713)
..++..++..+...|+++.++..+++.+..+|.+...|..+-..|...|+...|+..|++.-+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 6788899999999999999999999999999999999999999999999999999999987653
No 346
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=91.62 E-value=0.58 Score=48.84 Aligned_cols=89 Identities=19% Similarity=0.156 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 035707 616 GLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGES-MATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAV 694 (713)
Q Consensus 616 g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~ 694 (713)
+....|+..|.+++...|.....+.+.+.++.+.+-.. .=.|+.-...+++++|....+|+.|+.++..+++ +.+|+
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r--~~eal 465 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTR--YLEAL 465 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhh--HHHhh
Confidence 34566777777777777777777777777766653221 0145555566777777777777777777777777 77777
Q ss_pred HHHHHHHccccC
Q 035707 695 ECFEAAALLEES 706 (713)
Q Consensus 695 ~~~~~a~~l~p~ 706 (713)
.+...+....|.
T Consensus 466 ~~~~alq~~~Pt 477 (758)
T KOG1310|consen 466 SCHWALQMSFPT 477 (758)
T ss_pred hhHHHHhhcCch
Confidence 777766666663
No 347
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=91.46 E-value=3.9 Score=34.85 Aligned_cols=67 Identities=12% Similarity=0.138 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHh-hhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccC
Q 035707 441 PYIIYHLCLENAEQRK---LDVALYYAKKLLN-LEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTG 507 (713)
Q Consensus 441 ~~~~~~la~~~~~~g~---~~~A~~~~~~~l~-~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 507 (713)
....+++++++....+ ..+.+.+++..++ ..|....+..+.|+..+.+.++|+.++.+++..++..|
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~ 102 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEP 102 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCC
Confidence 4456666666665543 3455666666664 44444334666667777777777777777777777666
No 348
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.34 E-value=0.37 Score=31.69 Aligned_cols=29 Identities=31% Similarity=0.306 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHcc
Q 035707 673 TAWYNLGLLYKTYAGASALEAVECFEAAALL 703 (713)
Q Consensus 673 ~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l 703 (713)
.++.+||.+|...|+ +++|..++++++.+
T Consensus 3 ~~~~~la~~~~~~g~--~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGR--YEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhh--cchhhHHHHHHHHH
Confidence 567889999999999 99999999999874
No 349
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.22 E-value=1.7 Score=46.61 Aligned_cols=102 Identities=18% Similarity=0.085 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 035707 514 LLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSK 593 (713)
Q Consensus 514 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 593 (713)
++.+-|.-..+..+|..+++.|...+...|.+.. ..........+..+|..+.+.+.|.+++++
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~----------------~~~FaK~qR~l~~CYL~L~QLD~A~E~~~E 419 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNY----------------SDRFAKIQRALQVCYLKLEQLDNAVEVYQE 419 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhh----------------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3445566677888999999999999988765411 122367788899999999999999999999
Q ss_pred HHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 035707 594 SKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDA 631 (713)
Q Consensus 594 al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 631 (713)
+-+.+|.++-.....-.+....|.-++|+.+..+....
T Consensus 420 AE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 420 AEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 99999999888777777788889999999988877654
No 350
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.21 E-value=15 Score=37.84 Aligned_cols=136 Identities=16% Similarity=0.245 Sum_probs=101.3
Q ss_pred CHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCCCChhH
Q 035707 527 RLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLS--QWRDAEVCLSKSKAINPYSASG 604 (713)
Q Consensus 527 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~ 604 (713)
..++-+.....++..+|+. ..+|+...+++.+.+ +|..=+.+.+++++.+|.+..+
T Consensus 90 ~ld~eL~~~~~~L~~npks----------------------Y~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~ 147 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKS----------------------YGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHA 147 (421)
T ss_pred hhHHHHHHHHHHHHhCchh----------------------HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccc
Confidence 4566677777888887654 889999999999776 4688899999999999999888
Q ss_pred HHHHHHHHHHcC----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh------cC-CC---hHHHHHHHHHHHhhCCC
Q 035707 605 WHSTGLLYEAKG----LQQEALVSFRKALDAEPNHVPSLVSIARVLRQI------GG-ES---MATIRCFLTDALRLDRT 670 (713)
Q Consensus 605 ~~~lg~~~~~~g----~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~------g~-~~---l~~A~~~~~~al~~~p~ 670 (713)
|...-.+..... ...+=+++..+++.-++.+-.+|.....++... |+ +. +..-+.....|+-.+|+
T Consensus 148 W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~ 227 (421)
T KOG0529|consen 148 WHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPE 227 (421)
T ss_pred hHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCcc
Confidence 877655554433 356678888999999999999999988877632 31 11 23445556677778999
Q ss_pred CHHHHHHHHHHHHH
Q 035707 671 NTTAWYNLGLLYKT 684 (713)
Q Consensus 671 ~~~~~~~lg~~~~~ 684 (713)
+..+|+..-+.+.+
T Consensus 228 DqS~WfY~rWLl~~ 241 (421)
T KOG0529|consen 228 DQSCWFYHRWLLGR 241 (421)
T ss_pred ccceeeehHHhhcc
Confidence 99999875544433
No 351
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=91.18 E-value=16 Score=35.89 Aligned_cols=104 Identities=14% Similarity=0.121 Sum_probs=51.6
Q ss_pred HHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----hcCCchHHHHHHHHHHHHcCCH
Q 035707 418 RILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNL-----EARSNVKGYLLLARVLSAQKQF 492 (713)
Q Consensus 418 ~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~~la~~~~~~g~~ 492 (713)
+++++++|++.+.... ..+.+.|++..|.+...-.++. .+.+. .....++.++.....-
T Consensus 2 ~~kky~eAidLL~~Ga---------------~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~-~~~~rl~~l~~~~~~~ 65 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGA---------------LILLKHGQYGSGADLALLLIEVYEKSEDPVDE-ESIARLIELISLFPPE 65 (260)
T ss_dssp HTT-HHHHHHHHHHHH---------------HHHHHTT-HHHHHHHHHHHHHHHHHTT---SH-HHHHHHHHHHHHS-TT
T ss_pred ccccHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhCCCC
Confidence 3456677777665544 3455555655555544444432 12222 2334455554444322
Q ss_pred H-HHHHHHHHHhhc----cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 035707 493 A-DAESVINDSLDQ----TGKWDQGELLRTKAKLQIAQGRLKNAIETYVN 537 (713)
Q Consensus 493 ~-~A~~~~~~al~~----~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 537 (713)
+ +-....+++++- .+...++.++..+|..+.+.|++.+|..+|-.
T Consensus 66 ~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 66 EPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp -TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 1 122222222222 12235788999999999999999998887754
No 352
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=90.83 E-value=3.5 Score=33.19 Aligned_cols=59 Identities=12% Similarity=0.142 Sum_probs=40.3
Q ss_pred HHcCCHHHHHHHHHHHhhccCCC-------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 035707 487 SAQKQFADAESVINDSLDQTGKW-------DQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFR 545 (713)
Q Consensus 487 ~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 545 (713)
...|++.+|.+.+.+.++..... ....++..+|.++...|++++|+..+++++++....
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 45566666666665555443111 123466778899999999999999999999886543
No 353
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.38 E-value=18 Score=38.83 Aligned_cols=162 Identities=10% Similarity=-0.061 Sum_probs=102.6
Q ss_pred HhcHHHHHHHHHHHHHhhC-----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----h-----------
Q 035707 419 ILKQSQALVALETAEKTMR-----------ERDPYIIYHLCLENAEQRKLDVALYYAKKLLNL-----E----------- 471 (713)
Q Consensus 419 ~~~~~~A~~~~~~al~~~~-----------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~----------- 471 (713)
...|++|...|.-++...+ |-+.+.+..++.++..+|+.+-|....++++-. .
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 3445677777776662222 556788999999999999999888888777531 1
Q ss_pred -----cCCc--hHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHh
Q 035707 472 -----ARSN--VKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQ-IAQGRLKNAIETYVNLLAVLQ 543 (713)
Q Consensus 472 -----p~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~~l~~~~ 543 (713)
|.+- ..+.+.....+.+.|-+.-|.++++-.+.++|. .++.....+..+| .+..+|.--|+.++..-..+.
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~-eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~ 409 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPS-EDPLGILYLIDIYALRAREYQWIIELSNEPENMNK 409 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCc-CCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence 2221 012334445666789999999999999999985 3665555555554 445566665665555422211
Q ss_pred hhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCC
Q 035707 544 FRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQ---WRDAEVCLSKSKAINP 599 (713)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p 599 (713)
....|. ...-..+|..|..... -+.|...+.+|+...|
T Consensus 410 -----------------l~~~PN-~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 410 -----------------LSQLPN-FGYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred -----------------HhhcCC-chHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 001111 2233456666666555 5678888999988877
No 354
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.19 E-value=28 Score=36.91 Aligned_cols=99 Identities=17% Similarity=-0.015 Sum_probs=68.7
Q ss_pred CCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHH
Q 035707 351 NSDCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALE 430 (713)
Q Consensus 351 ~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 430 (713)
.|-+-..+..+-.++..+..+. -...++.+++. .+++. .+++.++.|| ... ..++-...++
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~-~veh~c~~~l~--~~e~k----mal~el~q~y-----------~en-~n~~l~~lWe 122 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQ-IVEHLCTRVLE--YGESK----MALLELLQCY-----------KEN-GNEQLYSLWE 122 (711)
T ss_pred ccccchHHHHHHHHhccchHHH-HHHHHHHHHHH--hcchH----HHHHHHHHHH-----------Hhc-CchhhHHHHH
Confidence 3444444555555666665666 66677778776 44445 7888888888 333 4566777888
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 035707 431 TAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNL 470 (713)
Q Consensus 431 ~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 470 (713)
+.+ +.+-++...--.|+..|.+ ++-..+..+|.+++..
T Consensus 123 r~v-e~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 123 RLV-EYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYR 160 (711)
T ss_pred HHH-HhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHH
Confidence 888 8877777777777777766 8888888888888764
No 355
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=89.40 E-value=1.2 Score=46.15 Aligned_cols=100 Identities=19% Similarity=0.237 Sum_probs=64.2
Q ss_pred hhhHhhhcCCHHHHHhhhhcCCccccchhhhhhhhhhccccccCCCCCCCCCcchhHHHHHHHHHHHhhhhhhccCchHH
Q 035707 90 LGRLEFQKGNIEAALHVFEGIDVAAVTSRMKVSLSRRCDQNRRRSQSDAAPPMSMHAVSLLVEAIFLKTKSLQGLGRFEE 169 (713)
Q Consensus 90 lg~~~~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~g~~~e 169 (713)
|-|++...|||..|+++++.|+++... +. ..+++- | .-.+|..|.||.-++||.+
T Consensus 128 LlRvh~LLGDY~~Alk~l~~idl~~~~--l~----------------~~V~~~--~-----is~~YyvGFaylMlrRY~D 182 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENIDLNKKG--LY----------------TKVPAC--H-----ISTYYYVGFAYLMLRRYAD 182 (404)
T ss_pred HHHHHHhccCHHHHHHHhhccCcccch--hh----------------ccCcch--h-----eehHHHHHHHHHHHHHHHH
Confidence 447899999999999999988764221 11 111111 1 1357888999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCcccchHHHHHHHHHHhHHHHH
Q 035707 170 ACQSCKVILDTVEHALPEGLPGNHSIDCKLQETLNKAVELLPELYK 215 (713)
Q Consensus 170 A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~ 215 (713)
|++.|..++-.+.+.........+..+ .+.....+.+.+++.+..
T Consensus 183 Air~f~~iL~yi~r~k~~~~~~~~q~d-~i~K~~eqMyaLlAic~~ 227 (404)
T PF10255_consen 183 AIRTFSQILLYIQRTKNQYHQRSYQYD-QINKKNEQMYALLAICLS 227 (404)
T ss_pred HHHHHHHHHHHHHHhhhhhccccchhh-HHHhHHHHHHHHHHHHHH
Confidence 999999998766554311112222223 445555666666665554
No 356
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=89.29 E-value=0.77 Score=44.66 Aligned_cols=86 Identities=19% Similarity=0.204 Sum_probs=73.8
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHhcCCChHHHHHHHHHHHhhC
Q 035707 590 CLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVS-IARVLRQIGGESMATIRCFLTDALRLD 668 (713)
Q Consensus 590 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~l~~A~~~~~~al~~~ 668 (713)
.|.++....|+++..|...+..-.+.|.+.+--..|.++++.+|.+++.|.. -+.-+...++.+ .++..+.++++.+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~--s~Ra~f~~glR~N 172 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIE--SSRAMFLKGLRMN 172 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHH--HHHHHHHhhhccC
Confidence 3455566778899999998888888899999999999999999999999987 455677788886 9999999999999
Q ss_pred CCCHHHHHH
Q 035707 669 RTNTTAWYN 677 (713)
Q Consensus 669 p~~~~~~~~ 677 (713)
|++|..|+.
T Consensus 173 ~~~p~iw~e 181 (435)
T COG5191 173 SRSPRIWIE 181 (435)
T ss_pred CCCchHHHH
Confidence 999998865
No 357
>PF12854 PPR_1: PPR repeat
Probab=89.18 E-value=0.9 Score=28.50 Aligned_cols=31 Identities=16% Similarity=0.064 Sum_probs=28.0
Q ss_pred CCCcHHHHHHHHHHHHhcCcHHHHHHHHHhh
Q 035707 298 IEWDPSIIDHLSFALSVSGELWTLAHQVEEL 328 (713)
Q Consensus 298 ~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~ 328 (713)
.+.|..+|+.|..+|.+.|+.++|.+.|+++
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 4568889999999999999999999999874
No 358
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=89.11 E-value=29 Score=35.62 Aligned_cols=108 Identities=21% Similarity=0.086 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 035707 513 ELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLS 592 (713)
Q Consensus 513 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 592 (713)
..|+.+..++...|+...-...+...+.... ...+........+.+-..|...+.|+.|.....
T Consensus 170 k~~fy~~l~~E~~~~l~~~rs~l~~~lrtAt----------------Lrhd~e~qavLiN~LLr~yL~n~lydqa~~lvs 233 (493)
T KOG2581|consen 170 KLYFYLYLSYELEGRLADIRSFLHALLRTAT----------------LRHDEEGQAVLINLLLRNYLHNKLYDQADKLVS 233 (493)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHhh----------------hcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 4556666666677776655555555554321 112223345566677788888888888887776
Q ss_pred HHHhcC--C--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 035707 593 KSKAIN--P--YSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHV 636 (713)
Q Consensus 593 ~al~~~--p--~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 636 (713)
+..--. . ..+..++.+|.+..-+++|..|.++|-+|+...|.+.
T Consensus 234 K~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 234 KSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred cccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 654211 1 1234567788888888899999999999998888743
No 359
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.99 E-value=3.3 Score=44.53 Aligned_cols=90 Identities=8% Similarity=-0.060 Sum_probs=46.9
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 035707 574 LANVYTSLSQWRDAEVCLSKSKAINPYS------ASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLR 647 (713)
Q Consensus 574 la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~ 647 (713)
-|.-.++..+|..+++.|...+..-|.+ +.....+..+|....+.|.|++++++|-+.+|.++-....+-.+..
T Consensus 360 ~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~ 439 (872)
T KOG4814|consen 360 TAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFL 439 (872)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 3444455555666666666555544433 2234445555555555555555555555555555555555544444
Q ss_pred HhcCCChHHHHHHHHHHH
Q 035707 648 QIGGESMATIRCFLTDAL 665 (713)
Q Consensus 648 ~~g~~~l~~A~~~~~~al 665 (713)
..|.-. +|+..+....
T Consensus 440 ~E~~Se--~AL~~~~~~~ 455 (872)
T KOG4814|consen 440 AEDKSE--EALTCLQKIK 455 (872)
T ss_pred HhcchH--HHHHHHHHHH
Confidence 455543 5555544443
No 360
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=88.85 E-value=27 Score=34.95 Aligned_cols=174 Identities=14% Similarity=0.096 Sum_probs=114.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhh----c-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc-----CCCCcHHH
Q 035707 445 YHLCLENAEQRKLDVALYYAKKLLNLE----A-RSNVKGYLLLARVLSAQKQFADAESVINDSLDQT-----GKWDQGEL 514 (713)
Q Consensus 445 ~~la~~~~~~g~~~~A~~~~~~~l~~~----p-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~ 514 (713)
..++..|...++|.+|+......+..- . ...++++..-..+|....+..+|...+..|-... |...+..+
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence 457889999999999999888776531 1 1122566677788889999999988888775542 21122333
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHH--H
Q 035707 515 LRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCL--S 592 (713)
Q Consensus 515 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~--~ 592 (713)
-..-|.++....+|..|..+|-.+++-... ..++..-..++..+-.+-...+..++--..+ .
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfEgf~s----------------~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K 275 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDS----------------LDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAK 275 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHccccc----------------cCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhH
Confidence 344566777778999999999998875321 1222222334444444555566666654444 3
Q ss_pred HHHhcCCCChhHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCC
Q 035707 593 KSKAINPYSASGWHSTGLLYEAK--GLQQEALVSFRKALDAEPN 634 (713)
Q Consensus 593 ~al~~~p~~~~~~~~lg~~~~~~--g~~~eA~~~~~~al~~~p~ 634 (713)
.+++....+..+....+..+.+. .+|+.|+..|..-+..+|-
T Consensus 276 ~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 276 LALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 45555555677777777777654 4788899888888777664
No 361
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.83 E-value=37 Score=36.39 Aligned_cols=217 Identities=14% Similarity=0.020 Sum_probs=127.8
Q ss_pred cCCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHH
Q 035707 350 ENSDCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVAL 429 (713)
Q Consensus 350 ~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~ 429 (713)
..|++...++..+++..-.|+.+ .|+..++..+. +.-.++....++-+|.++ .-..++..|-..+
T Consensus 262 ~~p~ga~wll~~ar~l~~~g~~e-aa~~~~~~~v~---~~~kQ~~~l~~fE~aw~~-----------v~~~~~~~aad~~ 326 (546)
T KOG3783|consen 262 RYPKGALWLLMEARILSIKGNSE-AAIDMESLSIP---IRMKQVKSLMVFERAWLS-----------VGQHQYSRAADSF 326 (546)
T ss_pred hCCCCccHHHHHHHHHHHcccHH-HHHHHHHhccc---HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhhHH
Confidence 67888888899999999999944 88888887765 222334456667777777 6677788888888
Q ss_pred HHHHHhhCCCCHHHHHH-HHHHHHH--------cCCHHHHHHHHHHHH---hhhcCCc-hH-HHHHHHH-----------
Q 035707 430 ETAEKTMRERDPYIIYH-LCLENAE--------QRKLDVALYYAKKLL---NLEARSN-VK-GYLLLAR----------- 484 (713)
Q Consensus 430 ~~al~~~~p~~~~~~~~-la~~~~~--------~g~~~~A~~~~~~~l---~~~p~~~-~~-~~~~la~----------- 484 (713)
.... ....-..-.+.. .|.++.. .|+-+.|..+++... ...|.+. .+ .....+.
T Consensus 327 ~~L~-desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~ 405 (546)
T KOG3783|consen 327 DLLR-DESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNAS 405 (546)
T ss_pred HHHH-hhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccccccc
Confidence 8776 444333223333 3344432 234444444444332 2212111 00 1111111
Q ss_pred ----------HHHHcC----CHHHHHHHHHHHhhccCCC----CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhh
Q 035707 485 ----------VLSAQK----QFADAESVINDSLDQTGKW----DQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRK 546 (713)
Q Consensus 485 ----------~~~~~g----~~~~A~~~~~~al~~~p~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 546 (713)
+|...| ..++.. -++..+. .|.. +..--+..+|.++..+|+...|...|...++.....
T Consensus 406 ~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~-~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~- 482 (546)
T KOG3783|consen 406 ILLASPYYELAYFWNGFSRMSKNELE-KMRAELE-NPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKR- 482 (546)
T ss_pred ccccchHHHHHHHHhhcccCChhhHH-HHHHHHh-ccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-
Confidence 122111 112222 1111111 1111 122345678999999999999999999888652211
Q ss_pred hhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCC
Q 035707 547 KSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQ-WRDAEVCLSKSKAINP 599 (713)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p 599 (713)
..+.-..+.+++.+|.+|...|. ..++..++.+|.....
T Consensus 483 --------------~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~ 522 (546)
T KOG3783|consen 483 --------------TEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYAS 522 (546)
T ss_pred --------------ccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcc
Confidence 22233447889999999999988 9999999999887663
No 362
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.18 E-value=6.1 Score=36.52 Aligned_cols=77 Identities=17% Similarity=0.168 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHH
Q 035707 492 FADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETW 571 (713)
Q Consensus 492 ~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (713)
-++|...|-++-.. |.-+++...+.+|..|. ..+.++++..+.+++++.+. +...+++++
T Consensus 122 d~~A~~~fL~~E~~-~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~------------------~~~~n~eil 181 (203)
T PF11207_consen 122 DQEALRRFLQLEGT-PELETAELQYALATYYT-KRDPEKTIQLLLRALELSNP------------------DDNFNPEIL 181 (203)
T ss_pred cHHHHHHHHHHcCC-CCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC------------------CCCCCHHHH
Confidence 34455555444322 33356666667776665 55677777777777776432 224456777
Q ss_pred HHHHHHHHHCCCHHHHH
Q 035707 572 HDLANVYTSLSQWRDAE 588 (713)
Q Consensus 572 ~~la~~~~~~g~~~~A~ 588 (713)
..|+.++...|+++.|-
T Consensus 182 ~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 182 KSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHhcchhhhh
Confidence 77777777777776653
No 363
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.67 E-value=19 Score=33.39 Aligned_cols=72 Identities=18% Similarity=0.150 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC----chHHHHHHHHHHHHcCCHHHHH
Q 035707 423 SQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARS----NVKGYLLLARVLSAQKQFADAE 496 (713)
Q Consensus 423 ~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~~la~~~~~~g~~~~A~ 496 (713)
++|...|-++-+.-.-++++..+.+|..|. ..+.++|+..+.+++.+.+.+ + +.+..|+.++..+|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~-eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNP-EILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCH-HHHHHHHHHHHHhcchhhhh
Confidence 556666655541111245666666666555 566777777777777654332 3 56677777777777777664
No 364
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=87.67 E-value=1.6 Score=27.85 Aligned_cols=33 Identities=15% Similarity=0.165 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHH--HHHHHccccCC
Q 035707 673 TAWYNLGLLYKTYAGASALEAVEC--FEAAALLEESA 707 (713)
Q Consensus 673 ~~~~~lg~~~~~~g~~~~~~A~~~--~~~a~~l~p~~ 707 (713)
+.|+.+|-.+...|+ +++|+.. |+-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~k--y~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGK--YDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHhcccC
Confidence 567788888888888 8888888 44776666653
No 365
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=87.67 E-value=4.6 Score=32.51 Aligned_cols=56 Identities=14% Similarity=0.190 Sum_probs=34.9
Q ss_pred HHHcCCHHHHHHHHHHHHhhhcCCc--------hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 035707 451 NAEQRKLDVALYYAKKLLNLEARSN--------VKGYLLLARVLSAQKQFADAESVINDSLDQT 506 (713)
Q Consensus 451 ~~~~g~~~~A~~~~~~~l~~~p~~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 506 (713)
..+.|+|..|++.+.+.++...... ..+...+|.++...|++++|+..+++++++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3456677777666666655432111 1345567777777777777777777777664
No 366
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=87.35 E-value=2.1 Score=27.27 Aligned_cols=31 Identities=23% Similarity=0.287 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH--HHHhhhc
Q 035707 442 YIIYHLCLENAEQRKLDVALYYAK--KLLNLEA 472 (713)
Q Consensus 442 ~~~~~la~~~~~~g~~~~A~~~~~--~~l~~~p 472 (713)
+.++.+|..+..+|++++|++.|. -+..+++
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 456666667777777777777633 5444444
No 367
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=87.21 E-value=4.1 Score=39.54 Aligned_cols=70 Identities=19% Similarity=0.222 Sum_probs=50.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 035707 571 WHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLV 640 (713)
Q Consensus 571 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 640 (713)
..++=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.+.|.+.-|++.++..++.-|+.+.+-.
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence 3344456667777777777777777777777777777777777777777777777777777777665443
No 368
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=87.00 E-value=32 Score=34.42 Aligned_cols=92 Identities=13% Similarity=0.112 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCCChHHHHHH
Q 035707 583 QWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDA--EPNHVPSLVSIARVLRQIGGESMATIRCF 660 (713)
Q Consensus 583 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~l~~A~~~ 660 (713)
+|..-..+|+-...+.| ++.+-.|.+.......-.+.++...+-.... -.++...+-..|.++.+.|+.+ +|...
T Consensus 311 DW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~--eAr~a 387 (415)
T COG4941 311 DWPAIDALYDALEQAAP-SPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVE--EARAA 387 (415)
T ss_pred ChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChH--HHHHH
Confidence 45555556665555655 4555555555555555556666655544432 1234455666777777777776 77777
Q ss_pred HHHHHhhCCCCHHHHHH
Q 035707 661 LTDALRLDRTNTTAWYN 677 (713)
Q Consensus 661 ~~~al~~~p~~~~~~~~ 677 (713)
|++++.+.++..+..+.
T Consensus 388 ydrAi~La~~~aer~~l 404 (415)
T COG4941 388 YDRAIALARNAAERAFL 404 (415)
T ss_pred HHHHHHhcCChHHHHHH
Confidence 88877777766554443
No 369
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=86.85 E-value=4.1 Score=41.63 Aligned_cols=106 Identities=15% Similarity=-0.003 Sum_probs=72.2
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Q 035707 519 AKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAIN 598 (713)
Q Consensus 519 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 598 (713)
|..++++++|..|..-|..+|++..+-...-.. ..............+-..+..||+++++.+-|+....+.+.++
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~----~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ln 258 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKP----FKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLN 258 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCC----CCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcC
Confidence 445566777777777777777765321000000 0000000001113445578999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 035707 599 PYSASGWHSTGLLYEAKGLQQEALVSFRKA 628 (713)
Q Consensus 599 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~a 628 (713)
|....-+...+.++....+|.+|...+--+
T Consensus 259 P~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 259 PSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998766544
No 370
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=86.53 E-value=0.96 Score=26.27 Aligned_cols=24 Identities=17% Similarity=0.009 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHH
Q 035707 673 TAWYNLGLLYKTYAGASALEAVECFE 698 (713)
Q Consensus 673 ~~~~~lg~~~~~~g~~~~~~A~~~~~ 698 (713)
.+.+.+|.++...|+ +++|...++
T Consensus 2 ~a~~~la~~~~~~G~--~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGD--PDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCC--HHHHHHHHh
Confidence 456778888888888 888877765
No 371
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.11 E-value=19 Score=38.59 Aligned_cols=183 Identities=13% Similarity=-0.032 Sum_probs=109.3
Q ss_pred ccCCchhHHHHHHHHHHHH-------HHHhhcCCCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHH
Q 035707 273 FVPRNNIEEAVLLLLILLK-------KIVLGKIEWDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALC 345 (713)
Q Consensus 273 ~~~~~~~eeA~~ll~~~~~-------~~~l~~~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~ 345 (713)
|.+.+.+++|...|...+. ...+...|-....+-.++.+.-..|+.+.++..+++.+-....-....+.....
T Consensus 248 ~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred eecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Confidence 3567788888777654421 123344566677777888889999999999998887642100000000000000
Q ss_pred hhcc--cCCCChHHHHH---HHHHHHhcCCChHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHhhcccccccHHHHH
Q 035707 346 YLGE--ENSDCNLELLV---ASKICAENKVCIEEGITYARKALSMLQGK-CRQMASIANCLLGVLLSSQSRSVVSDSKRI 419 (713)
Q Consensus 346 ~~~~--~~p~~~~~~~~---~a~~~~~~g~~~~~A~~~~~~al~~~~~~-~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~ 419 (713)
-++. .+|.+-..++. .-....+.|-+. .|.++++-.++ ++|. ++ .+...+...|. .+.
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~r-TA~E~cKllls-Ldp~eDP----l~~l~~ID~~A----------Lra 391 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWR-TALEWCKLLLS-LDPSEDP----LGILYLIDIYA----------LRA 391 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChH-HHHHHHHHHhh-cCCcCCc----hhHHHHHHHHH----------HHH
Confidence 0000 44555433332 234456788888 99999999999 7776 77 66666666664 666
Q ss_pred hcHHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhhcC
Q 035707 420 LKQSQALVALETAEKTM-----RERDPYIIYHLCLENAEQRK---LDVALYYAKKLLNLEAR 473 (713)
Q Consensus 420 ~~~~~A~~~~~~al~~~-----~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~l~~~p~ 473 (713)
.+|.=-++.++..- .. -|+.+ .-..++..|..... -..|...+.+++...|.
T Consensus 392 reYqwiI~~~~~~e-~~n~l~~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 392 REYQWIIELSNEPE-NMNKLSQLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HhHHHHHHHHHHHH-hhccHhhcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 66766666666553 22 23322 22345555555544 56788888888888774
No 372
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=85.97 E-value=5.2 Score=38.83 Aligned_cols=62 Identities=23% Similarity=0.114 Sum_probs=51.4
Q ss_pred HHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHH
Q 035707 417 KRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYL 480 (713)
Q Consensus 417 ~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 480 (713)
.+.++++.|..+.++.+ .++|.++.-+-..|.+|.+.|.+..|+..+...+...|+.+ .+-.
T Consensus 192 ~~e~~~~~al~~~~r~l-~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~-~a~~ 253 (269)
T COG2912 192 LRELQWELALRVAERLL-DLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDP-IAEM 253 (269)
T ss_pred HHhhchHHHHHHHHHHH-hhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCch-HHHH
Confidence 67788888888888888 88888888888888888888888888888888888888876 4433
No 373
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=85.88 E-value=3.6 Score=40.47 Aligned_cols=65 Identities=9% Similarity=0.091 Sum_probs=49.7
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 035707 601 SASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRL 667 (713)
Q Consensus 601 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~ 667 (713)
...++..++..+...|+++.++..+++.+..+|-+-..|..+-..|...|+.. .|+..|++.-..
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~--~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQS--AAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCch--HHHHHHHHHHHH
Confidence 34567777777778888888888888888888888888888888888888876 787777766553
No 374
>PF13041 PPR_2: PPR repeat family
Probab=85.11 E-value=4 Score=28.15 Aligned_cols=29 Identities=14% Similarity=0.176 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 035707 478 GYLLLARVLSAQKQFADAESVINDSLDQT 506 (713)
Q Consensus 478 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 506 (713)
+|..+...+.+.|++++|.++|++..+..
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 44444455555555555555555554443
No 375
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=85.03 E-value=3.4 Score=41.24 Aligned_cols=62 Identities=13% Similarity=0.213 Sum_probs=53.9
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 035707 587 AEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQ 648 (713)
Q Consensus 587 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 648 (713)
|+.+|.+|+.+.|.+...++.+|.++...|+.-.|+-+|-+++-.....+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999998776668889999888888
No 376
>PF12854 PPR_1: PPR repeat
Probab=83.97 E-value=2.5 Score=26.43 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 035707 567 EMETWHDLANVYTSLSQWRDAEVCLSK 593 (713)
Q Consensus 567 ~~~~~~~la~~~~~~g~~~~A~~~~~~ 593 (713)
+..+|..+...|.+.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 355666666666666666666666654
No 377
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=83.48 E-value=27 Score=31.67 Aligned_cols=114 Identities=14% Similarity=0.131 Sum_probs=78.9
Q ss_pred cHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH-----HcCCHHHHHHHHHHHHhcCCCCHHHH
Q 035707 566 LEMETWHDLANVYTS-LSQWRDAEVCLSKSKAINPYSASGWHSTGLLYE-----AKGLQQEALVSFRKALDAEPNHVPSL 639 (713)
Q Consensus 566 ~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-----~~g~~~eA~~~~~~al~~~p~~~~~~ 639 (713)
..++....||..+.. ..+|++|..+|..--.-+. .+...+.+|..+. ..++...|++.|..+-. .+.+.+.
T Consensus 32 K~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC 108 (248)
T KOG4014|consen 32 KRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQAC 108 (248)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHH
Confidence 347777888877654 5678999998887665543 4555666665443 23578899999988766 4567777
Q ss_pred HHHHHHHHH-----hcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 035707 640 VSIARVLRQ-----IGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKT 684 (713)
Q Consensus 640 ~~la~~~~~-----~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 684 (713)
..+|.++.. .++++.++|++++.++..+. +..+.+.|...|..
T Consensus 109 ~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~ 156 (248)
T KOG4014|consen 109 RYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMG 156 (248)
T ss_pred hhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhc
Confidence 778877654 34556789999999998764 45566666655544
No 378
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=83.27 E-value=2.1 Score=27.64 Aligned_cols=35 Identities=23% Similarity=0.219 Sum_probs=29.0
Q ss_pred HHHHHhhhhhhccCchHHHHHHHHHHHHHHHHhcC
Q 035707 152 EAIFLKTKSLQGLGRFEEACQSCKVILDTVEHALP 186 (713)
Q Consensus 152 e~~~~~~~~~~~~g~~~eA~~~~~~~l~~~~~~~~ 186 (713)
+++..+|.+-...++|++|+..|++.+.+.++.+|
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~ 36 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLP 36 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 34566777788889999999999999998887764
No 379
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=83.25 E-value=46 Score=32.20 Aligned_cols=62 Identities=16% Similarity=0.250 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHH
Q 035707 357 ELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAE 433 (713)
Q Consensus 357 ~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 433 (713)
-+..+|+++.+.++++ +.+.++++++. ..+. +...=..++..+|- ...|....+...+....
T Consensus 3 ~li~~Aklaeq~eRy~-dmv~~mk~~~~-~~~e---Lt~eERnLlsvayK----------n~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYD-DMVEYMKQLIE-MNPE---LTEEERNLLSVAYK----------NVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHHHHTTHHH-HHHHHHHHHHH-TSS------HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHH-HHHHHHHHHHc-cCCC---CCHHHHHHHHHHHH----------hccccchHHHHhhhhHh
Confidence 3567888899999999 99999999988 4332 33366667777772 23444455555555444
No 380
>PRK11619 lytic murein transglycosylase; Provisional
Probab=82.53 E-value=93 Score=35.25 Aligned_cols=243 Identities=10% Similarity=-0.040 Sum_probs=121.5
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHH--HHHHhhccCCCCcHH
Q 035707 436 MRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESV--INDSLDQTGKWDQGE 513 (713)
Q Consensus 436 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~--~~~al~~~p~~~~~~ 513 (713)
..|.+....+..+......|+-++|....+++.......+ .....+-..+...|........ ++.++.. .+..
T Consensus 124 ~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p-~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~----~~~~ 198 (644)
T PRK11619 124 EKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLP-NACDKLFSVWQQSGKQDPLAYLERIRLAMKA----GNTG 198 (644)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC-hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC----CCHH
Confidence 3467777777788888888888878777777665544444 4444444444444433332211 1122211 1222
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH--HHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHH
Q 035707 514 LLRTKAKLQIAQGRLKNAIETYVNL--LAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCL 591 (713)
Q Consensus 514 ~~~~la~~~~~~g~~~~A~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 591 (713)
....+.... +.-.++ .++.. +...|........ ... .+........++..-....+.+.|...+
T Consensus 199 lA~~l~~~l---~~~~~~--~a~a~~al~~~p~~~~~~~~--------~~~-~~~~~~~~~~~~l~Rlar~d~~~A~~~~ 264 (644)
T PRK11619 199 LVTYLAKQL---PADYQT--IASALIKLQNDPNTVETFAR--------TTG-PTDFTRQMAAVAFASVARQDAENARLMI 264 (644)
T ss_pred HHHHHHHhc---ChhHHH--HHHHHHHHHHCHHHHHHHhh--------ccC-CChhhHHHHHHHHHHHHHhCHHHHHHHH
Confidence 222222211 000011 11111 1112221110000 000 0110111222333344566778888888
Q ss_pred HHHHhcCCCCh----hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 035707 592 SKSKAINPYSA----SGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRL 667 (713)
Q Consensus 592 ~~al~~~p~~~----~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~ 667 (713)
.+......-+. .++..+|.-....+..++|..++..+..... +...+.....+-...++++ .+...+...-..
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al~~~dw~--~~~~~i~~L~~~ 341 (644)
T PRK11619 265 PSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVRMALGTGDRR--GLNTWLARLPME 341 (644)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHHHHHHccCHH--HHHHHHHhcCHh
Confidence 87654443332 2344555444444336778888877554322 2222333333444666765 666666554333
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHc
Q 035707 668 DRTNTTAWYNLGLLYKTYAGASALEAVECFEAAAL 702 (713)
Q Consensus 668 ~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~ 702 (713)
..+.....|-+|..+...|+ .++|...|+++..
T Consensus 342 ~~~~~rw~YW~aRa~~~~g~--~~~A~~~~~~~a~ 374 (644)
T PRK11619 342 AKEKDEWRYWQADLLLEQGR--KAEAEEILRQLMQ 374 (644)
T ss_pred hccCHhhHHHHHHHHHHcCC--HHHHHHHHHHHhc
Confidence 34566778889999888999 9999999998754
No 381
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=82.45 E-value=2.6 Score=25.98 Aligned_cols=30 Identities=20% Similarity=0.109 Sum_probs=24.8
Q ss_pred HhHHHHHhcCChhHHHHHHHHHhcccCCCC
Q 035707 209 LLPELYKLAGDPDETILSYRRALLYYWNLD 238 (713)
Q Consensus 209 ~l~~~~~~~g~~~eA~~~~~~al~~~~~~~ 238 (713)
.+-..|.+.|++++|+..|+++...+..||
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 5 TLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 345678999999999999999988766554
No 382
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=81.60 E-value=2.5 Score=27.27 Aligned_cols=30 Identities=20% Similarity=0.197 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHccc
Q 035707 673 TAWYNLGLLYKTYAGASALEAVECFEAAALLE 704 (713)
Q Consensus 673 ~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~ 704 (713)
+++..||.+-...++ |++|+.-|++++++.
T Consensus 2 dv~~~Lgeisle~e~--f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENEN--FEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhcc--HHHHHHHHHHHHHHH
Confidence 467889999999999 999999999998864
No 383
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=81.58 E-value=62 Score=32.53 Aligned_cols=163 Identities=17% Similarity=0.056 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhccccccc---------------HHHHHhcHHHHHHHHHHHHHhhC-
Q 035707 374 EGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVS---------------DSKRILKQSQALVALETAEKTMR- 437 (713)
Q Consensus 374 ~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~---------------~~~~~~~~~~A~~~~~~al~~~~- 437 (713)
||+.+-+-... +-|..+ .++-+++.+....++...- .....+-.+++...+.+++ ...
T Consensus 214 EairLgRll~~-L~p~EP----E~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~-~~~~ 287 (415)
T COG4941 214 EAIRLGRLLAR-LLPGEP----EALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRAL-ASRR 287 (415)
T ss_pred HHHHHHHHHHH-HcCCCh----HHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHH-HcCC
Confidence 78877777777 677777 7777777766555443211 1334467789999999998 544
Q ss_pred CCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcH
Q 035707 438 ERDPYIIYHLCLENAE-----QRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQG 512 (713)
Q Consensus 438 p~~~~~~~~la~~~~~-----~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 512 (713)
|.-....-.++.++.. .-+|..-..+|.......|+.. +-.+.+.......-...++...+.......-....
T Consensus 288 pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPv--V~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~ 365 (415)
T COG4941 288 PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPV--VTLNRAVALAMREGPAAGLAMVEALLARPRLDGYH 365 (415)
T ss_pred CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCe--EeehHHHHHHHhhhHHhHHHHHHHhhccccccccc
Confidence 3333333444444443 3467777778888877777754 44455666666666777888888776653222344
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 035707 513 ELLRTKAKLQIAQGRLKNAIETYVNLLAVLQF 544 (713)
Q Consensus 513 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 544 (713)
..+...|.++.+.|+.++|...|++++.+.++
T Consensus 366 ~~h~~RadlL~rLgr~~eAr~aydrAi~La~~ 397 (415)
T COG4941 366 LYHAARADLLARLGRVEEARAAYDRAIALARN 397 (415)
T ss_pred ccHHHHHHHHHHhCChHHHHHHHHHHHHhcCC
Confidence 56778899999999999999999999998654
No 384
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=81.00 E-value=60 Score=31.98 Aligned_cols=22 Identities=9% Similarity=0.081 Sum_probs=13.6
Q ss_pred HHHHHcCCHHHHHHHHHHHhhc
Q 035707 484 RVLSAQKQFADAESVINDSLDQ 505 (713)
Q Consensus 484 ~~~~~~g~~~~A~~~~~~al~~ 505 (713)
.-|...++...|...++.-.+.
T Consensus 149 L~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 149 LQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 3455667777777766555544
No 385
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=79.75 E-value=1.2e+02 Score=34.58 Aligned_cols=120 Identities=9% Similarity=0.014 Sum_probs=84.2
Q ss_pred HHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHH---HHcCCHHH
Q 035707 418 RILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVL---SAQKQFAD 494 (713)
Q Consensus 418 ~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~---~~~g~~~~ 494 (713)
..+..++=+..++.-+ .+++.+...+..|..++...|++++-...-.++..+.|.++ ..|.....-. ...+...+
T Consensus 91 ~~~~~~~ei~t~~ee~-ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~-~lWl~Wl~d~~~mt~s~~~~~ 168 (881)
T KOG0128|consen 91 NEGGGNQEIRTLEEEL-AINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPP-HLWLEWLKDELSMTQSEERKE 168 (881)
T ss_pred ccccchhHHHHHHHHh-cccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhhccCcchhH
Confidence 3344455566667667 77888888899999999999999988888788888888887 7776544322 23377788
Q ss_pred HHHHHHHHhhccCCCCcHHHHHHHHHHH-------HHhCCHHHHHHHHHHHHHHH
Q 035707 495 AESVINDSLDQTGKWDQGELLRTKAKLQ-------IAQGRLKNAIETYVNLLAVL 542 (713)
Q Consensus 495 A~~~~~~al~~~p~~~~~~~~~~la~~~-------~~~g~~~~A~~~~~~~l~~~ 542 (713)
+...|++++.... .+.+|...+... ...++++.-...|.+++...
T Consensus 169 v~~~~ekal~dy~---~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~ 220 (881)
T KOG0128|consen 169 VEELFEKALGDYN---SVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSL 220 (881)
T ss_pred HHHHHHHHhcccc---cchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhh
Confidence 8999999987653 344444444333 34456777777888887653
No 386
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=78.87 E-value=17 Score=37.30 Aligned_cols=58 Identities=16% Similarity=0.029 Sum_probs=50.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 035707 605 WHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDA 664 (713)
Q Consensus 605 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~a 664 (713)
-..+..+|...++.+-|+....+.+.++|.+..-+...|.++..+.+|. +|-..+.-+
T Consensus 231 etklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~--eAarSamia 288 (569)
T PF15015_consen 231 ETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYS--EAARSAMIA 288 (569)
T ss_pred HHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999997 666554443
No 387
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=78.31 E-value=13 Score=28.43 Aligned_cols=22 Identities=23% Similarity=0.072 Sum_probs=10.1
Q ss_pred HHcCCHHHHHHHHHHHHhhhcC
Q 035707 452 AEQRKLDVALYYAKKLLNLEAR 473 (713)
Q Consensus 452 ~~~g~~~~A~~~~~~~l~~~p~ 473 (713)
+...+.++|+..++++++..++
T Consensus 17 Y~~~~~~~Al~~W~~aL~k~~~ 38 (80)
T PF10579_consen 17 YHQNETQQALQKWRKALEKITD 38 (80)
T ss_pred hccchHHHHHHHHHHHHhhcCC
Confidence 3444444444444444444443
No 388
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.47 E-value=14 Score=28.24 Aligned_cols=49 Identities=12% Similarity=0.138 Sum_probs=24.5
Q ss_pred HhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHH
Q 035707 524 AQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCL 591 (713)
Q Consensus 524 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 591 (713)
...+.++|+..++++++..++. +....++-.+..+|...|++.+.+.+-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~-------------------~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDR-------------------EDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCCh-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555553322 223444444455555555555555443
No 389
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=76.32 E-value=6.1 Score=39.40 Aligned_cols=62 Identities=19% Similarity=0.201 Sum_probs=51.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 035707 621 ALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKT 684 (713)
Q Consensus 621 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 684 (713)
|..+|.+|+.+.|++...++.+|.+....|+.- .|+-+|-+++-.....+.+..+|..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l--~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDL--DAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HH--HHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchH--HHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 688999999999999999999999999988875 89999999987665568889999888887
No 390
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=75.76 E-value=1e+02 Score=31.87 Aligned_cols=106 Identities=12% Similarity=-0.080 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhhh-ccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHh
Q 035707 357 ELLVASKICAENKVCIEEGITYARKALSMLQ-GKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKT 435 (713)
Q Consensus 357 ~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 435 (713)
.++.+..++-..|+.. .-...+...+.... ..+....+...++|-.+| ...+.++.|-....+.. -
T Consensus 171 ~~fy~~l~~E~~~~l~-~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~y-----------L~n~lydqa~~lvsK~~-~ 237 (493)
T KOG2581|consen 171 LYFYLYLSYELEGRLA-DIRSFLHALLRTATLRHDEEGQAVLINLLLRNY-----------LHNKLYDQADKLVSKSV-Y 237 (493)
T ss_pred HHHHHHHHHHhhcchH-HHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHH-----------hhhHHHHHHHHHhhccc-C
Confidence 3445555566666655 55555555444222 223333445666677777 67788888888777654 2
Q ss_pred hCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCc
Q 035707 436 MRE----RDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSN 475 (713)
Q Consensus 436 ~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 475 (713)
-+. .....+|.+|.+..-+++|..|.++|-+++...|.+.
T Consensus 238 pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 238 PEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred ccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 111 1245678899999999999999999999999999754
No 391
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=75.21 E-value=13 Score=36.22 Aligned_cols=59 Identities=12% Similarity=0.111 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 035707 570 TWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKA 628 (713)
Q Consensus 570 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~a 628 (713)
.....+..|...|.+.+|+.+.++++..+|-+...+..+-.++...|+--.+.+.|++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34445677788888888888888888888888888888888888888877787777664
No 392
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=74.97 E-value=4.7 Score=24.02 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 035707 570 TWHDLANVYTSLSQWRDAEVCLSKSKA 596 (713)
Q Consensus 570 ~~~~la~~~~~~g~~~~A~~~~~~al~ 596 (713)
+|..+...|.+.|++++|...|++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 355666677777777777777766654
No 393
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=74.13 E-value=1 Score=49.43 Aligned_cols=55 Identities=25% Similarity=0.322 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhh--ccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHH
Q 035707 481 LLARVLSAQKQFADAESVINDSLD--QTGKWDQGELLRTKAKLQIAQGRLKNAIETYV 536 (713)
Q Consensus 481 ~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 536 (713)
.-+..+...|++..|..++...-. +.+. .........+.+....|++++|+..+.
T Consensus 29 ~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~-q~~~~~Ll~A~lal~~~~~~~Al~~L~ 85 (536)
T PF04348_consen 29 LAARALLQEGDWAQAQALLNQLDPQQLSPS-QQARYQLLRARLALAQGDPEQALSLLN 85 (536)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHhCCCHHHHHHHHHhcccccCChH-HHHHHHHHHHHHHHhcCCHHHHHHHhc
Confidence 334555555666666555555441 1221 233344445555555555555555554
No 394
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=73.75 E-value=9.1 Score=38.43 Aligned_cols=84 Identities=17% Similarity=0.107 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 035707 568 METWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLR 647 (713)
Q Consensus 568 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~ 647 (713)
.....+++.+-...+.+..|+..-..++..++....+++..+..+....++++|++.+..+....|++......+..+-.
T Consensus 275 ~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~ 354 (372)
T KOG0546|consen 275 FSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ 354 (372)
T ss_pred cccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence 44555677777788888888877777777777778888888888888888888888888888888888776655555444
Q ss_pred HhcC
Q 035707 648 QIGG 651 (713)
Q Consensus 648 ~~g~ 651 (713)
...+
T Consensus 355 ~~~~ 358 (372)
T KOG0546|consen 355 KKKQ 358 (372)
T ss_pred HHHH
Confidence 4433
No 395
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=73.53 E-value=7.3 Score=23.40 Aligned_cols=27 Identities=15% Similarity=0.132 Sum_probs=13.3
Q ss_pred CHHHHHHHHHHHHhcCCCChhHHHHHH
Q 035707 583 QWRDAEVCLSKSKAINPYSASGWHSTG 609 (713)
Q Consensus 583 ~~~~A~~~~~~al~~~p~~~~~~~~lg 609 (713)
+.+.|...|++++...|.++..|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 344455555555555555555544433
No 396
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=73.25 E-value=86 Score=32.89 Aligned_cols=60 Identities=13% Similarity=0.024 Sum_probs=33.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhhcCCc-hHHHHHH--HHHHHHcCCHHHHHHHHHHHhhc
Q 035707 446 HLCLENAEQRKLDVALYYAKKLLNLEARSN-VKGYLLL--ARVLSAQKQFADAESVINDSLDQ 505 (713)
Q Consensus 446 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~ 505 (713)
..+..++..++|..|...+..+...-|... ...+..+ |.-+...-++.+|.+.++..+..
T Consensus 136 ~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 136 RRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445556677777777777777766423322 0122222 33344556677777777766544
No 397
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.05 E-value=5.9 Score=26.58 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=10.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 035707 446 HLCLENAEQRKLDVALYYAKKLL 468 (713)
Q Consensus 446 ~la~~~~~~g~~~~A~~~~~~~l 468 (713)
.++..|...|+.+.|...+++++
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHH
Confidence 34444444444444444444444
No 398
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=72.67 E-value=95 Score=30.03 Aligned_cols=61 Identities=11% Similarity=0.115 Sum_probs=38.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHH-HcCCHHHHHHHHHHHhh
Q 035707 444 IYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLS-AQKQFADAESVINDSLD 504 (713)
Q Consensus 444 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~ 504 (713)
+..++.+..+.|+|++.+.+.++++..+|.-...-...+..+|- ..|....+...+.....
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 56788888899999999999999998877654344555555543 23444555555544443
No 399
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.42 E-value=58 Score=35.44 Aligned_cols=26 Identities=19% Similarity=0.394 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH
Q 035707 569 ETWHDLANVYTSLSQWRDAEVCLSKS 594 (713)
Q Consensus 569 ~~~~~la~~~~~~g~~~~A~~~~~~a 594 (713)
.-|..||.+....+++..|.+||.++
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhh
Confidence 33445555555555555555555544
No 400
>PRK11619 lytic murein transglycosylase; Provisional
Probab=71.77 E-value=1.8e+02 Score=32.95 Aligned_cols=211 Identities=12% Similarity=0.001 Sum_probs=109.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhhcCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHH
Q 035707 448 CLENAEQRKLDVALYYAKKLLNLEARSN---VKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIA 524 (713)
Q Consensus 448 a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~ 524 (713)
+..-....+.+.|...+.+......-+. ..++..+|.-....+...+|..++..+..... +....-....+...
T Consensus 248 ~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~---~~~~~e~r~r~Al~ 324 (644)
T PRK11619 248 AFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ---STSLLERRVRMALG 324 (644)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC---CcHHHHHHHHHHHH
Confidence 3334445566677777766544332221 12344444444443335666777766553322 23333344445557
Q ss_pred hCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhH
Q 035707 525 QGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASG 604 (713)
Q Consensus 525 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 604 (713)
.++++.....+..+-... .......+.+|..+...|+.++|...|+++.. +.+ .
T Consensus 325 ~~dw~~~~~~i~~L~~~~----------------------~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~~~--f 378 (644)
T PRK11619 325 TGDRRGLNTWLARLPMEA----------------------KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--QRG--F 378 (644)
T ss_pred ccCHHHHHHHHHhcCHhh----------------------ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--CCC--c
Confidence 777776666665532211 12356777778887778888888888888643 211 2
Q ss_pred HHHHHHHHHHcCCHHH---H-HHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 035707 605 WHSTGLLYEAKGLQQE---A-LVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGL 680 (713)
Q Consensus 605 ~~~lg~~~~~~g~~~e---A-~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~ 680 (713)
|-.++.- +.|..-. . ...-...+. . ......+..+...|... .|...+..+++. .++.-...++.
T Consensus 379 YG~LAa~--~Lg~~~~~~~~~~~~~~~~~~---~--~~~~~ra~~L~~~g~~~--~a~~ew~~~~~~--~~~~~~~~la~ 447 (644)
T PRK11619 379 YPMVAAQ--RLGEEYPLKIDKAPKPDSALT---Q--GPEMARVRELMYWNMDN--TARSEWANLVAS--RSKTEQAQLAR 447 (644)
T ss_pred HHHHHHH--HcCCCCCCCCCCCCchhhhhc---c--ChHHHHHHHHHHCCCHH--HHHHHHHHHHhc--CCHHHHHHHHH
Confidence 2222221 1221100 0 000000010 1 11244556677777776 777777776664 33455667777
Q ss_pred HHHHhCCCCHHHHHHHHHHH
Q 035707 681 LYKTYAGASALEAVECFEAA 700 (713)
Q Consensus 681 ~~~~~g~~~~~~A~~~~~~a 700 (713)
+....|. ++.++....++
T Consensus 448 ~A~~~g~--~~~ai~~~~~~ 465 (644)
T PRK11619 448 YAFNQQW--WDLSVQATIAG 465 (644)
T ss_pred HHHHCCC--HHHHHHHHhhc
Confidence 7777787 77777655443
No 401
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=71.69 E-value=8.8 Score=23.43 Aligned_cols=30 Identities=20% Similarity=0.161 Sum_probs=24.0
Q ss_pred HHHhHHHHHhcCChhHHHHHHHHHhcccCC
Q 035707 207 VELLPELYKLAGDPDETILSYRRALLYYWN 236 (713)
Q Consensus 207 ~~~l~~~~~~~g~~~eA~~~~~~al~~~~~ 236 (713)
+..+-..+.+.|+++.|...|+.|.+.+..
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 344556788999999999999999876543
No 402
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=71.66 E-value=1.4e+02 Score=31.69 Aligned_cols=27 Identities=11% Similarity=-0.109 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHH
Q 035707 396 IANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAE 433 (713)
Q Consensus 396 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 433 (713)
.....||+.+ ...++|+.|...|+.+.
T Consensus 209 ~q~R~LAD~a-----------Fml~Dy~~A~s~Y~~~k 235 (414)
T PF12739_consen 209 AQMRRLADLA-----------FMLRDYELAYSTYRLLK 235 (414)
T ss_pred HHHHHHHHHH-----------HHHccHHHHHHHHHHHH
Confidence 4456678888 78889999999999887
No 403
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=71.53 E-value=11 Score=22.59 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHH
Q 035707 656 TIRCFLTDALRLDRTNTTAWYNLG 679 (713)
Q Consensus 656 ~A~~~~~~al~~~p~~~~~~~~lg 679 (713)
.|...|++++...|.++..|...+
T Consensus 5 ~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 5 RARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred HHHHHHHHHHHHCCCChHHHHHHH
Confidence 455555555555555555554443
No 404
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=71.47 E-value=18 Score=33.76 Aligned_cols=62 Identities=19% Similarity=0.112 Sum_probs=55.9
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 035707 575 ANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHV 636 (713)
Q Consensus 575 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 636 (713)
..-+.+.+..++|+...+.-++-+|.+......+-.+++-.|+|++|...++-+-++.|++.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 34566788999999999999999999999999999999999999999999999999998864
No 405
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=70.84 E-value=81 Score=30.97 Aligned_cols=101 Identities=11% Similarity=0.198 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCc-----hHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHH-H
Q 035707 441 PYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSN-----VKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGE-L 514 (713)
Q Consensus 441 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~ 514 (713)
.++|.++|..|.+.++.+.+.++..+.+...-... ...-..+|.+|..+.-.++.++..+..++...+|+... .
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 67899999999999999999999998876542211 12445677788777778888888888998887765433 2
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 035707 515 LRTKAKLQIAQGRLKNAIETYVNLLAV 541 (713)
Q Consensus 515 ~~~la~~~~~~g~~~~A~~~~~~~l~~ 541 (713)
-...|...+...++.+|-..+-..+..
T Consensus 195 K~Y~Gi~~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 195 KVYKGIFKMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 334566666777888888777766554
No 406
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=70.56 E-value=16 Score=35.76 Aligned_cols=54 Identities=17% Similarity=0.076 Sum_probs=27.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 035707 447 LCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVIND 501 (713)
Q Consensus 447 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 501 (713)
.+..|...|.+.+|+.+.++++..+|-+. ..+..+..++...|+--.+...|++
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL~e-~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPLSE-QDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChhhh-HHHHHHHHHHHHhccchhhhhHHHH
Confidence 34445555555555555555555555554 5555555555555554444444443
No 407
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=70.20 E-value=9.7 Score=25.54 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=18.1
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh
Q 035707 572 HDLANVYTSLSQWRDAEVCLSKSKA 596 (713)
Q Consensus 572 ~~la~~~~~~g~~~~A~~~~~~al~ 596 (713)
+.+|..|..+|+.+.|...+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4567777777777777777777764
No 408
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=68.54 E-value=2.5e+02 Score=33.27 Aligned_cols=105 Identities=14% Similarity=0.091 Sum_probs=65.8
Q ss_pred hHHHHHhcCChhHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHhhcCCCCCCCcccccccccccCCchhHHHHHHHHHH
Q 035707 210 LPELYKLAGDPDETILSYRRALLYYWNLDIETTARIEKKFAVFLLYSGTDASPPNLRLQMELSFVPRNNIEEAVLLLLIL 289 (713)
Q Consensus 210 l~~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~i~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~eeA~~ll~~~ 289 (713)
.|+.+.....|+.|+..||+....-|.-..-..+ +-+....++....+...| ..+.+|+.-|.
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~-- 543 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEA--QFRLGITLLEKASEQGDP-------------RDFTQALSEFS-- 543 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHH--HHHhhHHHHHHHHhcCCh-------------HHHHHHHHHHH--
Confidence 4577888899999999999998875442221111 112222333322221111 24567766553
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCc
Q 035707 290 LKKIVLGKIEWDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGN 335 (713)
Q Consensus 290 ~~~~~l~~~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~ 335 (713)
.+-..|..|--|---+.+|.+.|++++-.+.++-+++..+..
T Consensus 544 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (932)
T PRK13184 544 ----YLHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQH 585 (932)
T ss_pred ----HhcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCC
Confidence 334556666666666778999999999999999998865443
No 409
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.36 E-value=2.4e+02 Score=32.96 Aligned_cols=180 Identities=14% Similarity=0.006 Sum_probs=99.8
Q ss_pred HHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHh
Q 035707 396 IANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMR----ERDPYIIYHLCLENAEQRKL--DVALYYAKKLLN 469 (713)
Q Consensus 396 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~----p~~~~~~~~la~~~~~~g~~--~~A~~~~~~~l~ 469 (713)
.-+..|+..| ...|..++|++.+.+.. ... +...+.+-.....+-..+.. +-..++..-.+.
T Consensus 505 ~~y~~Li~LY-----------~~kg~h~~AL~ll~~l~-d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~ 572 (877)
T KOG2063|consen 505 KKYRELIELY-----------ATKGMHEKALQLLRDLV-DEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLN 572 (877)
T ss_pred ccHHHHHHHH-----------HhccchHHHHHHHHHHh-ccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhc
Confidence 4467788888 78888999999999988 522 22233333333333344443 555555555555
Q ss_pred hhcCCchHHHHH------------HHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHh--------CCHH
Q 035707 470 LEARSNVKGYLL------------LARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQ--------GRLK 529 (713)
Q Consensus 470 ~~p~~~~~~~~~------------la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~--------g~~~ 529 (713)
.+|.....++.. ...-+......+-++.+++.++..... .....+..++..|... ++-+
T Consensus 573 ~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~-~~~~lht~ll~ly~e~v~~~~~~~~kg~ 651 (877)
T KOG2063|consen 573 KNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRL-TSTLLHTVLLKLYLEKVLEQASTDGKGE 651 (877)
T ss_pred cCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccc-cchHHHHHHHHHHHHHHhhccCchhccc
Confidence 555443111111 112234566777888999998877642 2444555555555432 2233
Q ss_pred HHHHH--HHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 035707 530 NAIET--YVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKA 596 (713)
Q Consensus 530 ~A~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 596 (713)
++.+. .+++...-+... .+. -+......+. ...|...+.++.++|+.++|+..|-..+.
T Consensus 652 e~~E~~~rekl~~~l~~s~-~Y~------p~~~L~~~~~-~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 652 EAPETTVREKLLDFLESSD-LYD------PQLLLERLNG-DELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred cchhhhHHHHHHHHhhhhc-ccC------cchhhhhccc-hhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 45444 333333222110 000 0011111222 56778888888899999999988877663
No 410
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=67.44 E-value=56 Score=36.40 Aligned_cols=70 Identities=17% Similarity=0.066 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHH---------cCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHh
Q 035707 455 RKLDVALYYAKKLLNLEARSNVKGYLLLARVLSA---------QKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQ 525 (713)
Q Consensus 455 g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~ 525 (713)
|+-++|+...-.+++.......+.+..-|++|.. .+..+.|+.+|+++++..|. ...-.+++.++...
T Consensus 257 GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~---~~sGIN~atLL~aa 333 (1226)
T KOG4279|consen 257 GDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPL---EYSGINLATLLRAA 333 (1226)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCch---hhccccHHHHHHHh
Confidence 5566666666665554433322555555555533 24556677777777777762 22233455555554
Q ss_pred CC
Q 035707 526 GR 527 (713)
Q Consensus 526 g~ 527 (713)
|+
T Consensus 334 G~ 335 (1226)
T KOG4279|consen 334 GE 335 (1226)
T ss_pred hh
Confidence 43
No 411
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=67.30 E-value=12 Score=22.79 Aligned_cols=26 Identities=8% Similarity=0.056 Sum_probs=17.1
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh
Q 035707 571 WHDLANVYTSLSQWRDAEVCLSKSKA 596 (713)
Q Consensus 571 ~~~la~~~~~~g~~~~A~~~~~~al~ 596 (713)
|..+...|.+.|++++|...|+++.+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45566666777777777777766654
No 412
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=65.58 E-value=2e+02 Score=30.94 Aligned_cols=187 Identities=13% Similarity=0.017 Sum_probs=116.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHH
Q 035707 438 ERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRT 517 (713)
Q Consensus 438 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 517 (713)
|-+...+..+..++...-++.-......+++..... . .+++.++.+|... ..++-..++++..+.+- ++...-..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~-k-mal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~Re 137 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGES-K-MALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRE 137 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcch-H-HHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHH
Confidence 445556666777777777777777788888876543 4 6888889998887 55667778888887765 56777777
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q 035707 518 KAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAI 597 (713)
Q Consensus 518 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 597 (713)
++..|.. ++...+...|.+++...-. .......-++|..+-..- -.+.+.-.....+.-..
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yrfI~----------------~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~ 198 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYRFIP----------------RRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTK 198 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHHhcc----------------hhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHh
Confidence 8887776 8888899999988875310 011122244555543221 23334333333333222
Q ss_pred CCC-ChhHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 035707 598 NPY-SASGWH-STGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQ 648 (713)
Q Consensus 598 ~p~-~~~~~~-~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 648 (713)
... ...+.+ ..-.-|....++++|+......++.+..+..+.-++..-+..
T Consensus 199 lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 199 LGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred hccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 211 122222 222345566788888888888888888877777666655544
No 413
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=65.47 E-value=2 Score=47.13 Aligned_cols=116 Identities=20% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 035707 425 ALVALETAEKTMRE-RDPYIIYHLCLENAEQRKLDVALYYAKKLL--NLEARSNVKGYLLLARVLSAQKQFADAESVIND 501 (713)
Q Consensus 425 A~~~~~~al~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l--~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 501 (713)
|..++.++- ...+ .....+..-+..+...|++..|...+.++- .+.|..........+.+....|++++|+..+..
T Consensus 8 A~~yL~~A~-~a~~~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~ 86 (536)
T PF04348_consen 8 AEQYLQQAQ-QASGEQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNA 86 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHH-hcCcHhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhcc
Confidence 344444554 3333 234455667889999999999999999876 344544435667788999999999999999975
Q ss_pred H-hhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 035707 502 S-LDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAV 541 (713)
Q Consensus 502 a-l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 541 (713)
. ...-|.......+...+.++...|++-+|...+-.+-..
T Consensus 87 ~~~~~l~~~~~~~~~~l~A~a~~~~~~~l~Aa~~~i~l~~l 127 (536)
T PF04348_consen 87 QDLWQLPPEQQARYHQLRAQAYEQQGDPLAAARERIALDPL 127 (536)
T ss_dssp -----------------------------------------
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 2 111222234556778899999999999888876655444
No 414
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=65.42 E-value=3e+02 Score=32.97 Aligned_cols=25 Identities=12% Similarity=0.122 Sum_probs=14.6
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Q 035707 516 RTKAKLQIAQGRLKNAIETYVNLLA 540 (713)
Q Consensus 516 ~~la~~~~~~g~~~~A~~~~~~~l~ 540 (713)
..++.-+..++++-+|-+.....+.
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhc
Confidence 4555556666666666665555443
No 415
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=64.97 E-value=1.1e+02 Score=32.17 Aligned_cols=62 Identities=16% Similarity=-0.001 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh--HHHHH--HHHHHHcCCHHHHHHHHHHHHhc
Q 035707 570 TWHDLANVYTSLSQWRDAEVCLSKSKAINPYSAS--GWHST--GLLYEAKGLQQEALVSFRKALDA 631 (713)
Q Consensus 570 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~l--g~~~~~~g~~~eA~~~~~~al~~ 631 (713)
.....+.-.+..++|..|...++.+...-|.+.. .+..+ |..+...-++.+|.+.+++.+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445666778999999999999999885333333 34444 34445677899999999998764
No 416
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=64.89 E-value=10 Score=22.42 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=7.4
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q 035707 483 ARVLSAQKQFADAESVIND 501 (713)
Q Consensus 483 a~~~~~~g~~~~A~~~~~~ 501 (713)
-..+.+.|++++|...|++
T Consensus 7 i~~~~~~~~~~~a~~~~~~ 25 (31)
T PF01535_consen 7 ISGYCKMGQFEEALEVFDE 25 (31)
T ss_pred HHHHHccchHHHHHHHHHH
Confidence 3333333344444333333
No 417
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.82 E-value=50 Score=34.03 Aligned_cols=99 Identities=17% Similarity=0.104 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHH
Q 035707 512 GELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCL 591 (713)
Q Consensus 512 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 591 (713)
..++..++.-|...|+.+.|++.|-++-...... ......|.++..+-...|+|..-..+.
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~-------------------khvInm~ln~i~VSI~~~nw~hv~sy~ 210 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSA-------------------KHVINMCLNLILVSIYMGNWGHVLSYI 210 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcch-------------------HHHHHHHHHHHHHHHhhcchhhhhhHH
Confidence 3467778888888999999999888865543322 233677888888888889998888777
Q ss_pred HHHHhcC--------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 035707 592 SKSKAIN--------PYSASGWHSTGLLYEAKGLQQEALVSFRKAL 629 (713)
Q Consensus 592 ~~al~~~--------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 629 (713)
.++...- .-.+.+...-|.+....++|..|.++|-.+.
T Consensus 211 ~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 211 SKAESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HHHHhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 7776541 0112344555666666778999998886654
No 418
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=64.51 E-value=70 Score=31.19 Aligned_cols=61 Identities=11% Similarity=-0.034 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 035707 568 METWHDLANVYTSLSQWRDAEVCLSKSKAINPYS------ASGWHSTGLLYEAKGLQQEALVSFRKA 628 (713)
Q Consensus 568 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~eA~~~~~~a 628 (713)
..+...+|..|+..|+|++|+.+|+.+....... ..+...+..++...|+.+..+...-+.
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5566789999999999999999999886543221 345566677777888887777655443
No 419
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=62.88 E-value=1e+02 Score=26.68 Aligned_cols=34 Identities=15% Similarity=0.185 Sum_probs=16.5
Q ss_pred HcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHH
Q 035707 453 EQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLS 487 (713)
Q Consensus 453 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~ 487 (713)
..+.....+.+++.++..++.++ ..+..+..++.
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~-~~~~~li~ly~ 52 (140)
T smart00299 19 KRNLLEELIPYLESALKLNSENP-ALQTKLIELYA 52 (140)
T ss_pred hCCcHHHHHHHHHHHHccCccch-hHHHHHHHHHH
Confidence 34455555555555555444333 44444444444
No 420
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.23 E-value=8.5 Score=30.70 Aligned_cols=38 Identities=34% Similarity=0.294 Sum_probs=30.1
Q ss_pred hhhhhhhccCC---HHHHHHHhhhHhhhcCCHHHHHhhhhc
Q 035707 72 ESSLRESGYLN---YEEARALLGRLEFQKGNIEAALHVFEG 109 (713)
Q Consensus 72 ~~~l~~~l~~~---~~~a~~llg~~~~~~g~~~~Al~~~~~ 109 (713)
+..|.++...| .+-.++-||-+|-..|+-+.|++.|+.
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHH
Confidence 34455554444 678889999999999999999999984
No 421
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=62.19 E-value=1e+02 Score=26.60 Aligned_cols=51 Identities=10% Similarity=0.133 Sum_probs=36.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHH
Q 035707 483 ARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYV 536 (713)
Q Consensus 483 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 536 (713)
...+...+.......+++..+..++ .+...+..+..++... +..+.++.++
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~~--~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLNS--ENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccCc--cchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 3444556789999999999998875 5777888888888765 3444455544
No 422
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=62.17 E-value=1.2e+02 Score=34.28 Aligned_cols=38 Identities=16% Similarity=0.130 Sum_probs=23.0
Q ss_pred HHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcc
Q 035707 310 FALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGE 349 (713)
Q Consensus 310 ~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~ 349 (713)
.++..+|+|+.|.+.+-+ .....-......+++.+++.
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gL 303 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGL 303 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCC
Confidence 467789999999998877 11222233455667777776
No 423
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=62.14 E-value=19 Score=21.86 Aligned_cols=27 Identities=15% Similarity=0.095 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 035707 570 TWHDLANVYTSLSQWRDAEVCLSKSKA 596 (713)
Q Consensus 570 ~~~~la~~~~~~g~~~~A~~~~~~al~ 596 (713)
.|..+..++.+.|+++.|..+|+.+.+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455666677777777777777776654
No 424
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=61.11 E-value=2.3e+02 Score=30.17 Aligned_cols=172 Identities=10% Similarity=-0.072 Sum_probs=98.8
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCc-chHHHHHHHHHHHHhhcccccc---cHHHHHhcHHHHHHHHHHH
Q 035707 357 ELLVASKICAENKVCIEEGITYARKALSMLQGKCR-QMASIANCLLGVLLSSQSRSVV---SDSKRILKQSQALVALETA 432 (713)
Q Consensus 357 ~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~-~~~~~a~~~lg~~~~~~~~~~~---~~~~~~~~~~~A~~~~~~a 432 (713)
..-.+|..++-.++|+ -|...|+.+.+....+.. ...+-++.+.|.+....+.... ....-...++.|...|.++
T Consensus 210 q~R~LAD~aFml~Dy~-~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~ 288 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYE-LAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKS 288 (414)
T ss_pred HHHHHHHHHHHHccHH-HHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhh
Confidence 3456789999999999 999999999883322211 1224455566666655554321 1112223456777777763
Q ss_pred HH---hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--hcCCc----hHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 035707 433 EK---TMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNL--EARSN----VKGYLLLARVLSAQKQFADAESVINDSL 503 (713)
Q Consensus 433 l~---~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al 503 (713)
-. ........+....+.++...+.+.+|...+-+.... ..+.. .-.+-..+.++ ..+
T Consensus 289 ~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~--------------~~~ 354 (414)
T PF12739_consen 289 ALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCY--------------ASL 354 (414)
T ss_pred hccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhh--------------ccc
Confidence 20 111223445666677777888887777766665544 21111 02233333333 111
Q ss_pred hc-cCCCC------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q 035707 504 DQ-TGKWD------QGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQ 543 (713)
Q Consensus 504 ~~-~p~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 543 (713)
.. .|.+. ...-+..-|.-|...|+...|+..|.+++....
T Consensus 355 ~~~~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 355 RSNRPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred ccCCCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 11 11011 112234456888999999999999999998864
No 425
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=60.83 E-value=1.5e+02 Score=29.11 Aligned_cols=133 Identities=11% Similarity=0.070 Sum_probs=86.0
Q ss_pred ccHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhcCCCChhHHHHHHHHH------HHcCCHHHHHHHHHHHHhcCCCCH
Q 035707 565 SLEMETWHDLANVYTSL--SQWRDAEVCLSKSKAINPYSASGWHSTGLLY------EAKGLQQEALVSFRKALDAEPNHV 636 (713)
Q Consensus 565 ~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~------~~~g~~~eA~~~~~~al~~~p~~~ 636 (713)
|....+|...-.++... .+|..-....++++..++.+...|...-.+. .....+.+-.++-..++..++.+.
T Consensus 105 PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~ 184 (328)
T COG5536 105 PKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNN 184 (328)
T ss_pred CchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCCh
Confidence 44477777777666654 5677788888999999998877776544333 333445555667777888899998
Q ss_pred HHHHHH---HHHHHHhcCCC----hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHH
Q 035707 637 PSLVSI---ARVLRQIGGES----MATIRCFLTDALRLDRTNTTAWYNLGLLYKT----YAGASALEAVECFEA 699 (713)
Q Consensus 637 ~~~~~l---a~~~~~~g~~~----l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~~~A~~~~~~ 699 (713)
.+|... -......|++- +++-+++.-.++-.+|++..+|..+-.+... .-. +.+-++.+.+
T Consensus 185 SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~~~~~~d~~~--~~e~v~~L~k 256 (328)
T COG5536 185 SAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSSEFATDIVM--IGEKVEDLGK 256 (328)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHHhccchHHHHH--HHHHHHHHHh
Confidence 888876 33444456653 2244555556666789999888876554332 223 4555555543
No 426
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=60.44 E-value=1.7e+02 Score=28.50 Aligned_cols=197 Identities=16% Similarity=0.017 Sum_probs=93.0
Q ss_pred CHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHH-HHHHHHHHHHHhCCHHHHHHH
Q 035707 456 KLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGE-LLRTKAKLQIAQGRLKNAIET 534 (713)
Q Consensus 456 ~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~~~la~~~~~~g~~~~A~~~ 534 (713)
+...|+..+...+......+ .+....|.++-..| ..+...++++.. .+|...-.+ ....+.++-+..+- ..+..
T Consensus 64 ~~~~Av~~l~~vl~desq~p-mvRhEAaealga~~-~~~~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~~~--~~~~~ 138 (289)
T KOG0567|consen 64 QDEDAVPVLVEVLLDESQEP-MVRHEAAEALGAIG-DPESLEILTKYI-KDPCKEVRETCELAIKRLEWKDII--DKIAN 138 (289)
T ss_pred ccchhhHHHHHHhcccccch-HHHHHHHHHHHhhc-chhhHHHHHHHh-cCCccccchHHHHHHHHHHHhhcc--ccccc
Confidence 34567777777666555555 66667777777777 666777777777 444222222 22222222211110 00000
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 035707 535 YVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEA 614 (713)
Q Consensus 535 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 614 (713)
-......+|..+..... +..-+..-.....+......+..+.+.-..++|+..+-+.+..+ ++-..+..+.++.+
T Consensus 139 ~~p~~SvdPa~p~~~ss---v~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~--SalfrhEvAfVfGQ 213 (289)
T KOG0567|consen 139 SSPYISVDPAPPANLSS---VHELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADD--SALFRHEVAFVFGQ 213 (289)
T ss_pred cCccccCCCCCcccccc---HHHHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccc--hHHHHHHHHHHHhh
Confidence 00011122221100000 00000000011113333334555555555566766666655443 44444445555544
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 035707 615 KGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALR 666 (713)
Q Consensus 615 ~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~ 666 (713)
.+ -..|+..+.+.+.....++.....-+.++...++- +++..+++.+.
T Consensus 214 l~-s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e---~~~~vL~e~~~ 261 (289)
T KOG0567|consen 214 LQ-SPAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE---DCVEVLKEYLG 261 (289)
T ss_pred cc-chhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH---HHHHHHHHHcC
Confidence 43 34567777777766666666666666666666653 56666665543
No 427
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=59.46 E-value=1.8e+02 Score=28.36 Aligned_cols=27 Identities=7% Similarity=0.063 Sum_probs=21.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 035707 444 IYHLCLENAEQRKLDVALYYAKKLLNL 470 (713)
Q Consensus 444 ~~~la~~~~~~g~~~~A~~~~~~~l~~ 470 (713)
-+.+..+++..|+...|+..|++=+..
T Consensus 13 ~~ki~rl~l~~~~~~~Av~q~~~H~~~ 39 (247)
T PF11817_consen 13 AFKICRLYLWLNQPTEAVRQFRAHIDR 39 (247)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 456778899999999999988886654
No 428
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=59.39 E-value=1.1e+02 Score=26.08 Aligned_cols=85 Identities=12% Similarity=0.142 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChh
Q 035707 526 GRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKA--INPYSAS 603 (713)
Q Consensus 526 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~ 603 (713)
+.-..-...+++++...+++. .-...+....+|...+.... ++.++|..+.. +....+.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~-------------~Y~nD~RylkiWi~ya~~~~------~~~~if~~l~~~~IG~~~A~ 100 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDE-------------RYKNDERYLKIWIKYADLSS------DPREIFKFLYSKGIGTKLAL 100 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSG-------------GGTT-HHHHHHHHHHHTTBS------HHHHHHHHHHHHTTSTTBHH
T ss_pred CchhHHHHHHHHHHHHHhhhH-------------hhcCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCccHHHHH
Confidence 344455567777776654321 11223444566666554322 77788877765 4566778
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 035707 604 GWHSTGLLYEAKGLQQEALVSFRKAL 629 (713)
Q Consensus 604 ~~~~lg~~~~~~g~~~eA~~~~~~al 629 (713)
.|...|..+...|++++|.+.|+.++
T Consensus 101 fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 101 FYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 88889999999999999999998764
No 429
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.18 E-value=1.1e+02 Score=34.80 Aligned_cols=207 Identities=14% Similarity=0.042 Sum_probs=114.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhC
Q 035707 447 LCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQG 526 (713)
Q Consensus 447 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g 526 (713)
.-..+.+..-|+-|+...+.- ..+++.....+...|.-++..|++++|...|-+.+..-. ...+. .-+....
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le---~s~Vi----~kfLdaq 411 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE---PSEVI----KKFLDAQ 411 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC---hHHHH----HHhcCHH
Confidence 345566777788888766542 234444435777889999999999999999988886632 11111 1122222
Q ss_pred CHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhH--
Q 035707 527 RLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASG-- 604 (713)
Q Consensus 527 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-- 604 (713)
+..+=..+++.+.+..- ....--..|-.+|.++++.+.-.+..++ .+.....
T Consensus 412 ~IknLt~YLe~L~~~gl----------------------a~~dhttlLLncYiKlkd~~kL~efI~~----~~~g~~~fd 465 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGL----------------------ANSDHTTLLLNCYIKLKDVEKLTEFISK----CDKGEWFFD 465 (933)
T ss_pred HHHHHHHHHHHHHHccc----------------------ccchhHHHHHHHHHHhcchHHHHHHHhc----CCCcceeee
Confidence 23333333333333211 1133344677899999998776555443 3311110
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHH
Q 035707 605 WHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTN-TTAWYNLGLLYK 683 (713)
Q Consensus 605 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~-~~~~~~lg~~~~ 683 (713)
.-..-.++.+.+-+++|.-...+.- .+.. .+-.++...++++ +|++++.. +.|.. .......|.++.
T Consensus 466 ~e~al~Ilr~snyl~~a~~LA~k~~----~he~---vl~ille~~~ny~--eAl~yi~s---lp~~e~l~~l~kyGk~Ll 533 (933)
T KOG2114|consen 466 VETALEILRKSNYLDEAELLATKFK----KHEW---VLDILLEDLHNYE--EALRYISS---LPISELLRTLNKYGKILL 533 (933)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHhc----cCHH---HHHHHHHHhcCHH--HHHHHHhc---CCHHHHHHHHHHHHHHHH
Confidence 1112234455566666665544421 1222 3345667788887 99999754 23332 234556788877
Q ss_pred HhCCCCHHHHHHHHHHHHc
Q 035707 684 TYAGASALEAVECFEAAAL 702 (713)
Q Consensus 684 ~~g~~~~~~A~~~~~~a~~ 702 (713)
.... ++-...+-+...
T Consensus 534 ~h~P---~~t~~ili~~~t 549 (933)
T KOG2114|consen 534 EHDP---EETMKILIELIT 549 (933)
T ss_pred hhCh---HHHHHHHHHHHh
Confidence 6544 555555544443
No 430
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=58.77 E-value=71 Score=24.40 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=13.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 035707 606 HSTGLLYEAKGLQQEALVSFRKA 628 (713)
Q Consensus 606 ~~lg~~~~~~g~~~eA~~~~~~a 628 (713)
...+.-+...|++.+|+.+|+++
T Consensus 10 a~~AVe~D~~gr~~eAi~~Y~~a 32 (75)
T cd02682 10 AINAVKAEKEGNAEDAITNYKKA 32 (75)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Confidence 33444455667777666666543
No 431
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=57.89 E-value=1.7e+02 Score=27.68 Aligned_cols=58 Identities=16% Similarity=0.164 Sum_probs=47.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccC
Q 035707 449 LENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTG 507 (713)
Q Consensus 449 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 507 (713)
..+.+.+...+|+...+.-++..|.+. .....+-.+++-.|+|++|..-++-+-...|
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda-~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p 66 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDA-GGRHFLFQLLCVAGDWEKALAQLNLAATLSP 66 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccc-cchhHHHHHHhhcchHHHHHHHHHHHhhcCc
Confidence 455677788888888888888888887 7777888888888888888888888877776
No 432
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=57.33 E-value=21 Score=37.28 Aligned_cols=62 Identities=19% Similarity=0.171 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 035707 568 METWHDLANVYTSLSQWRDAEVCLSKSKAIN---------PYSASGWHSTGLLYEAKGLQQEALVSFRKALD 630 (713)
Q Consensus 568 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 630 (713)
.-+...|..++.-+|+|..|++.++.. +++ +-+..+++..|-+|..+++|.+|++.|...+-
T Consensus 122 YFSligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 122 YFSLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778899999999999988753 222 33456789999999999999999999998764
No 433
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=57.10 E-value=36 Score=35.83 Aligned_cols=30 Identities=27% Similarity=0.345 Sum_probs=24.3
Q ss_pred HHHhhhhhhccCchHHHHHHHHHHHHHHHH
Q 035707 154 IFLKTKSLQGLGRFEEACQSCKVILDTVEH 183 (713)
Q Consensus 154 ~~~~~~~~~~~g~~~eA~~~~~~~l~~~~~ 183 (713)
....|+-+...|+|++|+..|+.||..+.-
T Consensus 207 ~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l 236 (422)
T PF06957_consen 207 RLKEGYKLFTAGKFEEAIEIFRSILHSIPL 236 (422)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhhe
Confidence 455688899999999999999999986643
No 434
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=57.00 E-value=11 Score=37.94 Aligned_cols=106 Identities=11% Similarity=-0.043 Sum_probs=59.5
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCC---CC----------------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 035707 571 WHDLANVYTSLSQWRDAEVCLSKSKAINP---YS----------------ASGWHSTGLLYEAKGLQQEALVSFRKALDA 631 (713)
Q Consensus 571 ~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~----------------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 631 (713)
....+.-.++.++++.|..-|.+++..-. .+ .....+++.+-...+.+..|+..-..++..
T Consensus 225 ~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~ 304 (372)
T KOG0546|consen 225 KKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRD 304 (372)
T ss_pred hhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccccc
Confidence 34467778889999999998888765321 00 012233444444455555555555555555
Q ss_pred CCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 035707 632 EPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNL 678 (713)
Q Consensus 632 ~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~l 678 (713)
+++...+++..+..+....+++ +|++.+..+....|++......+
T Consensus 305 ~~s~tka~~Rr~~~~~~~~~~~--~a~~~~~~a~~~~p~d~~i~~~~ 349 (372)
T KOG0546|consen 305 ERSKTKAHYRRGQAYKLLKNYD--EALEDLKKAKQKAPNDKAIEEEL 349 (372)
T ss_pred ChhhCcHHHHHHhHHHhhhchh--hhHHHHHHhhccCcchHHHHHHH
Confidence 5555555555555555555554 55555555555555555443333
No 435
>PRK12798 chemotaxis protein; Reviewed
Probab=56.23 E-value=2.6e+02 Score=29.32 Aligned_cols=206 Identities=12% Similarity=-0.067 Sum_probs=128.4
Q ss_pred ChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHH
Q 035707 354 CNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAE 433 (713)
Q Consensus 354 ~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 433 (713)
+.+.-+.-|...+-.|+-. ++.+.+..+-....|.. + -.+..|..... ....+..+|+..|..+-
T Consensus 111 ~~d~~L~~g~laY~~Gr~~-~a~~~La~i~~~~l~~~--l--g~~laLv~a~l----------~~~~dP~~Al~~lD~aR 175 (421)
T PRK12798 111 NFDQRLADGALAYLSGRGR-EARKLLAGVAPEYLPAE--L--GAYLALVQGNL----------MVATDPATALKLLDQAR 175 (421)
T ss_pred hhhHHHHHHHHHHHcCCHH-HHHHHhhcCChhhcCch--h--hhHHHHHHHHH----------hcccCHHHHHHHHHHHH
Confidence 4445556666777788888 88877766433111221 1 33333333221 45677899999999998
Q ss_pred HhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCch--HHHHHHHHHHHHcCCHHHHHHHHHHHhhccCC
Q 035707 434 KTMRERDP---YIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNV--KGYLLLARVLSAQKQFADAESVINDSLDQTGK 508 (713)
Q Consensus 434 ~~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 508 (713)
-..|... .++-.-..+..+.|+.+++..+..+.+.....++. ..+......+....+-.. ...+..++..-+.
T Consensus 176 -LlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~-~~~l~~~ls~~d~ 253 (421)
T PRK12798 176 -LLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIR-DARLVEILSFMDP 253 (421)
T ss_pred -HhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcccccc-HHHHHHHHHhcCc
Confidence 7778652 23444445567889999999888888887766551 233444444444443222 2335566655433
Q ss_pred CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHH
Q 035707 509 WDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAE 588 (713)
Q Consensus 509 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 588 (713)
.....+|..+++.-...|+.+-|.-.-++++.+.. ........+....+..-.-..++++|.
T Consensus 254 ~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~------------------~~~~~~~ra~LY~aaa~v~s~~~~~al 315 (421)
T PRK12798 254 ERQRELYLRIARAALIDGKTELARFASERALKLAD------------------PDSADAARARLYRGAALVASDDAESAL 315 (421)
T ss_pred hhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhcc------------------CCCcchHHHHHHHHHHccCcccHHHHH
Confidence 35677899999999999999999999999998842 222333444444444444556677777
Q ss_pred HHHHHH
Q 035707 589 VCLSKS 594 (713)
Q Consensus 589 ~~~~~a 594 (713)
..+...
T Consensus 316 ~~L~~I 321 (421)
T PRK12798 316 EELSQI 321 (421)
T ss_pred HHHhcC
Confidence 666543
No 436
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=55.19 E-value=3.6e+02 Score=30.56 Aligned_cols=294 Identities=11% Similarity=0.012 Sum_probs=0.0
Q ss_pred hcCcHHHHHHHHHhhCCC------CCCchhhHHHHHHHhhcc--------------cCCCChHHHHHHHHHHHhcCCChH
Q 035707 314 VSGELWTLAHQVEELLPG------VMGNKKRYCTLALCYLGE--------------ENSDCNLELLVASKICAENKVCIE 373 (713)
Q Consensus 314 ~~g~~~~a~~~~e~~l~~------~~~~~~~~~~la~~~~~~--------------~~p~~~~~~~~~a~~~~~~g~~~~ 373 (713)
..|+...+.+.++.-+|. .+...+.+|.+++++... .+-+.+.--..+|.-....|-..
T Consensus 369 H~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~- 447 (929)
T KOG2062|consen 369 HRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRGITDYLLQQLKTAENEVVRHGACLGLGLAGMGSAN- 447 (929)
T ss_pred eccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCccHHHHHHHHHHhccchhhhhhhhhhccchhccccc-
Q ss_pred HHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 035707 374 EGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAE 453 (713)
Q Consensus 374 ~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~ 453 (713)
++.|+++-..+..++.-.-..+-+.+|.+. ......+.-.+.+.-+. +.......--...|..+..
T Consensus 448 --~eiYe~lKevLy~D~AvsGEAAgi~MGl~m-----------lGt~~~eaiedm~~Ya~-ETQHeki~RGl~vGiaL~~ 513 (929)
T KOG2062|consen 448 --EEIYEKLKEVLYNDSAVSGEAAGIAMGLLM-----------LGTANQEAIEDMLTYAQ-ETQHEKIIRGLAVGIALVV 513 (929)
T ss_pred --HHHHHHHHHHHhccchhhhhHHHHhhhhHh-----------hCcCcHHHHHHHHHHhh-hhhHHHHHHHHHHhHHHHH
Q ss_pred cCCHHHHHHHHHHHHh-hhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHH
Q 035707 454 QRKLDVALYYAKKLLN-LEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAI 532 (713)
Q Consensus 454 ~g~~~~A~~~~~~~l~-~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~ 532 (713)
.|+-++|-.+.++++. .+|--.....+.++..|.-.|+...-...+.-++.... ++..-....|.-+.-..+++.-.
T Consensus 514 ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~n--DDVrRaAVialGFVl~~dp~~~~ 591 (929)
T KOG2062|consen 514 YGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVN--DDVRRAAVIALGFVLFRDPEQLP 591 (929)
T ss_pred hhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccccc--hHHHHHHHHHheeeEecChhhch
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---hhHHHHHH
Q 035707 533 ETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYS---ASGWHSTG 609 (713)
Q Consensus 533 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg 609 (713)
.+..-+-+....+ ....+-..||.++...| ..+|+..++.+.. +|.+ ..++..+|
T Consensus 592 s~V~lLses~N~H--------------------VRyGaA~ALGIaCAGtG-~~eAi~lLepl~~-D~~~fVRQgAlIa~a 649 (929)
T KOG2062|consen 592 STVSLLSESYNPH--------------------VRYGAAMALGIACAGTG-LKEAINLLEPLTS-DPVDFVRQGALIALA 649 (929)
T ss_pred HHHHHHhhhcChh--------------------hhhhHHHHHhhhhcCCC-cHHHHHHHhhhhc-ChHHHHHHHHHHHHH
Q ss_pred HHHHHcC-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 035707 610 LLYEAKG-----LQQEALVSFRKALDAEPNHVPSLVSIARVLRQ 648 (713)
Q Consensus 610 ~~~~~~g-----~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 648 (713)
.+..++. +...-.+.|.+.+. ..+.+.+..+|.++.+
T Consensus 650 mIm~Q~t~~~~pkv~~frk~l~kvI~--dKhEd~~aK~GAilAq 691 (929)
T KOG2062|consen 650 MIMIQQTEQLCPKVNGFRKQLEKVIN--DKHEDGMAKFGAILAQ 691 (929)
T ss_pred HHHHhcccccCchHHHHHHHHHHHhh--hhhhHHHHHHHHHHHh
No 437
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=54.95 E-value=1.7e+02 Score=26.77 Aligned_cols=110 Identities=15% Similarity=0.054 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhh
Q 035707 396 IANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAE-----QRKLDVALYYAKKLLNL 470 (713)
Q Consensus 396 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~-----~g~~~~A~~~~~~~l~~ 470 (713)
.+-++||..+- --..++++|..+|..-- .- ...+...+.+|..++. .+++..|++.+..+-..
T Consensus 35 e~C~lLgdYlE----------gi~knF~~A~kv~K~nC-de-n~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~ 102 (248)
T KOG4014|consen 35 ESCQLLGDYLE----------GIQKNFQAAVKVFKKNC-DE-NSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA 102 (248)
T ss_pred hHHHHHHHHHH----------HHHHHHHHHHHHHHhcc-cc-cCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc
Confidence 77788888772 34567888888887543 21 2346666777665542 45788999999887653
Q ss_pred hcCCchHHHHHHHHHHHHc-----C--CHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHH
Q 035707 471 EARSNVKGYLLLARVLSAQ-----K--QFADAESVINDSLDQTGKWDQGELLRTKAKLQIA 524 (713)
Q Consensus 471 ~p~~~~~~~~~la~~~~~~-----g--~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~ 524 (713)
+.+ .+...++.++..- + +..+|+.++.++-+.. +..+.+.+...++.
T Consensus 103 --n~~-~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~----~~~aCf~LS~m~~~ 156 (248)
T KOG4014|consen 103 --NIP-QACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE----DGEACFLLSTMYMG 156 (248)
T ss_pred --CCH-HHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC----CchHHHHHHHHHhc
Confidence 334 7777777776643 2 3778999999988774 45556666666543
No 438
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.56 E-value=86 Score=34.21 Aligned_cols=132 Identities=17% Similarity=0.082 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHH
Q 035707 443 IIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQ 522 (713)
Q Consensus 443 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~ 522 (713)
....++..+..+|-.++|++ +.++.. - .-.+..+.|+++.|.++..++ ++..-|..+|.+.
T Consensus 616 ~rt~va~Fle~~g~~e~AL~-------~s~D~d--~---rFelal~lgrl~iA~~la~e~-------~s~~Kw~~Lg~~a 676 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALE-------LSTDPD--Q---RFELALKLGRLDIAFDLAVEA-------NSEVKWRQLGDAA 676 (794)
T ss_pred hhhhHHhHhhhccchHhhhh-------cCCChh--h---hhhhhhhcCcHHHHHHHHHhh-------cchHHHHHHHHHH
Confidence 44556666666666665544 444432 2 223456788898888776664 4566789999999
Q ss_pred HHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh
Q 035707 523 IAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSA 602 (713)
Q Consensus 523 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 602 (713)
...+++..|.+.|.++... ..|-.++...|+-+--...-..+.+....+.
T Consensus 677 l~~~~l~lA~EC~~~a~d~------------------------------~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~ 726 (794)
T KOG0276|consen 677 LSAGELPLASECFLRARDL------------------------------GSLLLLYTSSGNAEGLAVLASLAKKQGKNNL 726 (794)
T ss_pred hhcccchhHHHHHHhhcch------------------------------hhhhhhhhhcCChhHHHHHHHHHHhhcccch
Confidence 9999999999999986554 2233344555554433222222222222121
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHH
Q 035707 603 SGWHSTGLLYEAKGLQQEALVSFRKA 628 (713)
Q Consensus 603 ~~~~~lg~~~~~~g~~~eA~~~~~~a 628 (713)
+ -.+|...|+++++++.+.+.
T Consensus 727 -A----F~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 727 -A----FLAYFLSGDYEECLELLIST 747 (794)
T ss_pred -H----HHHHHHcCCHHHHHHHHHhc
Confidence 1 13466789999888877553
No 439
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.59 E-value=4.6e+02 Score=31.48 Aligned_cols=187 Identities=16% Similarity=0.055 Sum_probs=104.1
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcc-------cCCC--C--hHHHHHHHHHHHhcC
Q 035707 301 DPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGE-------ENSD--C--NLELLVASKICAENK 369 (713)
Q Consensus 301 ~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~-------~~p~--~--~~~~~~~a~~~~~~g 369 (713)
++.....+|.+|..+|...+|.++|.++..+.-... ....+.....=. ..|. . ...+...-+++-+.+
T Consensus 919 k~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~-aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn 997 (1480)
T KOG4521|consen 919 KPVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGN-ALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHN 997 (1480)
T ss_pred HHHHHHhhheeeecCCchHHHHHHHHHHhhccccHH-HHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhc
Confidence 566777888999999999999999999987653322 222222111000 2222 2 223333344444555
Q ss_pred CChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCC---HHHHHH
Q 035707 370 VCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERD---PYIIYH 446 (713)
Q Consensus 370 ~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~---~~~~~~ 446 (713)
..+ .++++...||+..++.++ ..+..+..+-.-+ ...|.+-+|...+ -.+|+. -+.+-.
T Consensus 998 ~~E-~vcQlA~~AIe~l~dd~p-s~a~~~t~vFnhh-----------ldlgh~~qAy~ai-----~~npdserrrdcLRq 1059 (1480)
T KOG4521|consen 998 HAE-EVCQLAVKAIENLPDDNP-SVALISTTVFNHH-----------LDLGHWFQAYKAI-----LRNPDSERRRDCLRQ 1059 (1480)
T ss_pred cHH-HHHHHHHHHHHhCCCcch-hHHHHHHHHHHhh-----------hchhhHHHHHHHH-----HcCCcHHHHHHHHHH
Confidence 555 999999999997666665 2222222222222 4456666665433 333432 335666
Q ss_pred HHHHHHHcCCHHHH------------HH-HHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHH-HHHHHHhhcc
Q 035707 447 LCLENAEQRKLDVA------------LY-YAKKLLNLEARSNVKGYLLLARVLSAQKQFADAE-SVINDSLDQT 506 (713)
Q Consensus 447 la~~~~~~g~~~~A------------~~-~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~ 506 (713)
+..++++.|+++.- .. .++.+-+..|......+..|-..+...+++.+|- ..|+.+..+.
T Consensus 1060 lvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~ 1133 (1480)
T KOG4521|consen 1060 LVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLE 1133 (1480)
T ss_pred HHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhc
Confidence 77777887776432 22 2233333333333245556666677778887764 4566666554
No 440
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=53.32 E-value=2.5e+02 Score=28.27 Aligned_cols=62 Identities=16% Similarity=0.056 Sum_probs=42.1
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 035707 517 TKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKA 596 (713)
Q Consensus 517 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 596 (713)
.-+..+...+..++|+..++..+...++ ..........++.++...|.++-|...|+++.+
T Consensus 218 ~eA~~l~~~~gl~~Al~~L~~~~~~~~s-------------------~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~ 278 (301)
T TIGR03362 218 EEARALAAEGGLEAALQRLQQRLAQARE-------------------PRERFHWRLLLARLLEQAGKAELAQQLYAALDQ 278 (301)
T ss_pred HHHHHHHHcCCHHHHHHHHHhhcccCCC-------------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456667778888888887765443221 123355666778888888888888888887765
Q ss_pred c
Q 035707 597 I 597 (713)
Q Consensus 597 ~ 597 (713)
.
T Consensus 279 ~ 279 (301)
T TIGR03362 279 Q 279 (301)
T ss_pred H
Confidence 3
No 441
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=52.84 E-value=1.7e+02 Score=30.90 Aligned_cols=75 Identities=16% Similarity=0.021 Sum_probs=41.9
Q ss_pred HHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHH-HHHHhhcc-----------------------cCCC----------
Q 035707 308 LSFALSVSGELWTLAHQVEELLPGVMGNKKRYCT-LALCYLGE-----------------------ENSD---------- 353 (713)
Q Consensus 308 l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~-la~~~~~~-----------------------~~p~---------- 353 (713)
++.-+...|.|+.|.+.+.+-+.... ...+.. +..+|.+. .+|.
T Consensus 124 laadhvAAGsFetAm~LLnrQiGivn--F~PLk~~Fl~~y~~s~~~l~~~~~~p~l~~~~~r~~~~~~~~~~lP~i~~~l 201 (422)
T PF06957_consen 124 LAADHVAAGSFETAMQLLNRQIGIVN--FEPLKPLFLEVYQASRTYLPALPSLPPLPSYIRRNWDESNPKNGLPAIPLSL 201 (422)
T ss_dssp SHHHHHHCT-HHHHHHHHHHHC-B-----GGGHHHHHHHHCCTEEEE-SSTTTS-EEEEEBCTTTTSSSCCG-BB----H
T ss_pred cHHHHHHhCCHHHHHHHHHHHhCccc--cHHHHHHHHHHHHhhceecccCCCCCCccccccCCccccccccCCCcCcCCH
Confidence 45557778999999988888654322 222222 22333332 1111
Q ss_pred -ChHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 035707 354 -CNLELLVASKICAENKVCIEEGITYARKALSM 385 (713)
Q Consensus 354 -~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~ 385 (713)
.....+..|.-++..|++. +|+..|+.+|..
T Consensus 202 ~~L~~~Lk~gyk~~t~gKF~-eA~~~Fr~iL~~ 233 (422)
T PF06957_consen 202 SSLEERLKEGYKLFTAGKFE-EAIEIFRSILHS 233 (422)
T ss_dssp HHHHHHHHHHHHHHHTT-HH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHH
Confidence 1233445566678889999 999999988873
No 442
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=52.84 E-value=1.5e+02 Score=25.39 Aligned_cols=79 Identities=14% Similarity=0.048 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHHHHhhhcCCc--------hHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhC
Q 035707 455 RKLDVALYYAKKLLNLEARSN--------VKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQG 526 (713)
Q Consensus 455 g~~~~A~~~~~~~l~~~p~~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g 526 (713)
+.-..-...+++++....++. ...|...+. ..+++.++|..+....-....+..|...|..+...|
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~------~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~ 113 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYAD------LSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRG 113 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHT------TBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHH------HccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcC
Confidence 444555667777776554432 023333332 223889999988876543467889999999999999
Q ss_pred CHHHHHHHHHHHH
Q 035707 527 RLKNAIETYVNLL 539 (713)
Q Consensus 527 ~~~~A~~~~~~~l 539 (713)
++++|.++|+..+
T Consensus 114 ~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 114 NFKKADEIYQLGI 126 (126)
T ss_dssp -HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhC
Confidence 9999999998764
No 443
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=52.26 E-value=95 Score=32.41 Aligned_cols=48 Identities=19% Similarity=-0.043 Sum_probs=43.7
Q ss_pred HhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 035707 419 ILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKL 467 (713)
Q Consensus 419 ~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 467 (713)
....-+|+.+++.++ ..+|.|......+..+|...|-...|...|...
T Consensus 196 ~~~l~~Ai~lLE~~l-~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 196 SEYLLQAIALLEHAL-KKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 455678999999999 999999999999999999999999999999765
No 444
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=51.93 E-value=2.4e+02 Score=27.86 Aligned_cols=118 Identities=16% Similarity=0.062 Sum_probs=79.2
Q ss_pred HHhcHHHHHHHHHHHHHhhCCC------C---HHHHHH---H-HHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHH
Q 035707 418 RILKQSQALVALETAEKTMRER------D---PYIIYH---L-CLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLAR 484 (713)
Q Consensus 418 ~~~~~~~A~~~~~~al~~~~p~------~---~~~~~~---l-a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~ 484 (713)
-..++..|++..++++..+..+ . .+.-.. + ..++.++++|.+++.+.-+..+.-.+-+..+...-..
T Consensus 47 V~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCIL 126 (309)
T PF07163_consen 47 VHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCIL 126 (309)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHH
Confidence 3456778888888777333211 1 122222 2 3567899999999998888776544445467777788
Q ss_pred HHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHH-----HHhCCHHHHHHHHH
Q 035707 485 VLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQ-----IAQGRLKNAIETYV 536 (713)
Q Consensus 485 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~-----~~~g~~~~A~~~~~ 536 (713)
.|.+.+++....+.-...+....+ ....-+..++.+| .=.|.+++|.+...
T Consensus 127 LysKv~Ep~amlev~~~WL~~p~N-q~lp~y~~vaELyLl~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 127 LYSKVQEPAAMLEVASAWLQDPSN-QSLPEYGTVAELYLLHVLLPLGHFSEAEELVV 182 (309)
T ss_pred HHHHhcCHHHHHHHHHHHHhCccc-CCchhhHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 899999999999998888876432 2233355555555 45699999988773
No 445
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=49.41 E-value=57 Score=28.54 Aligned_cols=51 Identities=10% Similarity=-0.009 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCC
Q 035707 440 DPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQ 491 (713)
Q Consensus 440 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~ 491 (713)
..+.....+...+..|++.-|....+.++..+|++. .+....+.++.++|.
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~-~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNE-EARQLKADALEQLGY 119 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-H-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHHHH
Confidence 455666777778888999999999999988899888 888888877766653
No 446
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.92 E-value=4.3e+02 Score=31.70 Aligned_cols=184 Identities=12% Similarity=0.034 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhh--------hhhhhcccCCCccH--HHHHHHHHHHHHHC
Q 035707 512 GELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGK--------NLVKNRQNHDRSLE--METWHDLANVYTSL 581 (713)
Q Consensus 512 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~--~~~~~~la~~~~~~ 581 (713)
....+.+|.+|...|+..+|+..|.++..-..... .+.... .+.. .....+.. ...|.....++...
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~-aL~~lv~~~~p~~~sv~d--G~t~s~e~t~lhYYlkv~rlle~h 996 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGN-ALRKLVYFLLPKRFSVAD--GKTPSEELTALHYYLKVVRLLEEH 996 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhccccHH-HHHHHHHHhcCCCCchhc--CCCCCchHHHHHHHHHHHHHHHHh
Confidence 44567788888899999999999998876432221 111110 1111 11111111 33455556777788
Q ss_pred CCHHHHHHHHHHHHhcCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcCCC-
Q 035707 582 SQWRDAEVCLSKSKAINPYS----ASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHV---PSLVSIARVLRQIGGES- 653 (713)
Q Consensus 582 g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~- 653 (713)
+-.+.+.+...++++.-|++ +.....+-.-+...|.+-+|... +-.+|+.. .++..+..+++..|..+
T Consensus 997 n~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~a----i~~npdserrrdcLRqlvivLfecg~l~~ 1072 (1480)
T KOG4521|consen 997 NHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKA----ILRNPDSERRRDCLRQLVIVLFECGELEA 1072 (1480)
T ss_pred ccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHH----HHcCCcHHHHHHHHHHHHHHHHhccchHH
Confidence 88899999888888765543 23344444455667778777654 33466532 46777888888888873
Q ss_pred --------h-HHHHH-HHHHHHhhCCCCHHHHHH-HHHHHHHhCCCCHHHHHH-HHHHHHccc
Q 035707 654 --------M-ATIRC-FLTDALRLDRTNTTAWYN-LGLLYKTYAGASALEAVE-CFEAAALLE 704 (713)
Q Consensus 654 --------l-~~A~~-~~~~al~~~p~~~~~~~~-lg~~~~~~g~~~~~~A~~-~~~~a~~l~ 704 (713)
+ ++-.. .++.+-+..|-...-+|. |=-.+...++ +.+|.. .|+.+..+.
T Consensus 1073 L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN--~RkaatvMYEyamrl~ 1133 (1480)
T KOG4521|consen 1073 LATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHN--FRKAATVMYEYAMRLE 1133 (1480)
T ss_pred HhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcc--hhHHHHHHHHHHHHhc
Confidence 0 12233 344455555543333344 3344556677 776654 456665544
No 447
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=47.30 E-value=62 Score=30.08 Aligned_cols=48 Identities=15% Similarity=0.052 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 035707 585 RDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEP 633 (713)
Q Consensus 585 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 633 (713)
+..++..++.+...| ++.++..++.++...|+.++|....+++..+.|
T Consensus 128 ~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 128 EAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 344555566666677 778888888888899999999988888888888
No 448
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=47.19 E-value=2.2e+02 Score=28.28 Aligned_cols=67 Identities=12% Similarity=0.088 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhc------CCC--------------hHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 035707 621 ALVSFRKALDAEPNHVPSLVSIARVLRQIG------GES--------------MATIRCFLTDALRLDRTNTTAWYNLGL 680 (713)
Q Consensus 621 A~~~~~~al~~~p~~~~~~~~la~~~~~~g------~~~--------------l~~A~~~~~~al~~~p~~~~~~~~lg~ 680 (713)
-...++.-++..|++..++..+|..+.... .+. .+.|...+.+++.++|....+...+-.
T Consensus 62 ~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~ 141 (277)
T PF13226_consen 62 RLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMIN 141 (277)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 444555555667777776666666554431 110 346677777777777777766666655
Q ss_pred HHHHhCC
Q 035707 681 LYKTYAG 687 (713)
Q Consensus 681 ~~~~~g~ 687 (713)
+-...|.
T Consensus 142 ~s~~fge 148 (277)
T PF13226_consen 142 ISAYFGE 148 (277)
T ss_pred HHhhcCC
Confidence 5554444
No 449
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=47.11 E-value=2.9e+02 Score=27.45 Aligned_cols=116 Identities=15% Similarity=0.201 Sum_probs=75.5
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHH--HHHCCC----HHHHHHHHH
Q 035707 519 AKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANV--YTSLSQ----WRDAEVCLS 592 (713)
Q Consensus 519 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~----~~~A~~~~~ 592 (713)
.+.+...++|++=-+.+.+..+...+. .+.+.. |...... ...... ...-...++
T Consensus 7 ir~LL~~~~f~eLd~~l~~~~~~~~~s------------------~~~e~~-Y~~~~~~~~l~D~~~~~~~~~~~~~~Lk 67 (277)
T PF13226_consen 7 IRELLQARDFAELDALLARLLQAWLQS------------------RDGEQR-YFRAWMSSTLFDMDSVVDAWQARLAVLK 67 (277)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhhhhc------------------cCccch-HHHHHhhccccCcchhhhHHHhHHHHHH
Confidence 455677888888888888877654322 111111 1111111 111111 224566777
Q ss_pred HHHhcCCCChhHHHHHHHHHHHc-----C-----------------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 035707 593 KSKAINPYSASGWHSTGLLYEAK-----G-----------------LQQEALVSFRKALDAEPNHVPSLVSIARVLRQIG 650 (713)
Q Consensus 593 ~al~~~p~~~~~~~~lg~~~~~~-----g-----------------~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g 650 (713)
.-++..|++..++..+|..+... | -.+.|...+.+++.++|..+.+...+-.+-...|
T Consensus 68 aWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fg 147 (277)
T PF13226_consen 68 AWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFG 147 (277)
T ss_pred HHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcC
Confidence 77888999988888888776432 1 2467888999999999999999988888877777
Q ss_pred CCC
Q 035707 651 GES 653 (713)
Q Consensus 651 ~~~ 653 (713)
..+
T Consensus 148 eP~ 150 (277)
T PF13226_consen 148 EPD 150 (277)
T ss_pred Cch
Confidence 775
No 450
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=47.09 E-value=67 Score=27.60 Aligned_cols=30 Identities=23% Similarity=0.239 Sum_probs=14.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 035707 670 TNTTAWYNLGLLYKTYAGASALEAVECFEAAA 701 (713)
Q Consensus 670 ~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~ 701 (713)
.+|..+..+|.+|.+.|+ ..+|-+.+.+|-
T Consensus 118 ~~p~~L~kia~Ay~klg~--~r~~~ell~~AC 147 (161)
T PF09205_consen 118 INPEFLVKIANAYKKLGN--TREANELLKEAC 147 (161)
T ss_dssp S-HHHHHHHHHHHHHTT---HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcc--hhhHHHHHHHHH
Confidence 344455555555555555 555555554443
No 451
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=47.02 E-value=63 Score=30.05 Aligned_cols=44 Identities=23% Similarity=0.196 Sum_probs=21.6
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCC
Q 035707 623 VSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDR 669 (713)
Q Consensus 623 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p 669 (713)
+..++.+...| ++..+..++.++...|+.+ +|.....++....|
T Consensus 132 ~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~--eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 132 EWAERLLRRRP-DPNVYQRYALALALLGDPE--EARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCC
Confidence 33344444444 2444555555555555554 55555555555555
No 452
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=45.97 E-value=79 Score=27.66 Aligned_cols=47 Identities=21% Similarity=0.050 Sum_probs=26.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 035707 605 WHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGG 651 (713)
Q Consensus 605 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 651 (713)
....+.-....|++.-|.++...++..+|++..+....+.++.++|.
T Consensus 73 vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 73 VLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 33444445556666666666666666666666666666666655543
No 453
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=44.96 E-value=3.5e+02 Score=27.40 Aligned_cols=106 Identities=13% Similarity=-0.067 Sum_probs=51.4
Q ss_pred CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHH
Q 035707 510 DQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEV 589 (713)
Q Consensus 510 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 589 (713)
...+++..++..|++.|+-+.|.+.+++.....-. .....+-.-....+|..|....-..+-++
T Consensus 102 ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs----------------~g~kiDVvf~~iRlglfy~D~~lV~~~ie 165 (393)
T KOG0687|consen 102 EVREAMLRKAEYYCQIGDKENALEALRKTYEKTVS----------------LGHKIDVVFYKIRLGLFYLDHDLVTESIE 165 (393)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh----------------cccchhhHHHHHHHHHhhccHHHHHHHHH
Confidence 34556677777777777777777777666554221 11111223334445555544433333333
Q ss_pred HHHHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 035707 590 CLSKSKAINPYS---ASGWHSTGLLYEAKGLQQEALVSFRKALDA 631 (713)
Q Consensus 590 ~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 631 (713)
..+..++..-+- -..-...|.......++.+|...|-.++..
T Consensus 166 kak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 166 KAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccc
Confidence 333333332211 011222344444555677777766666543
No 454
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=44.31 E-value=2.5e+02 Score=27.61 Aligned_cols=138 Identities=9% Similarity=0.066 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHH
Q 035707 493 ADAESVINDSLDQTGKWDQGELLRTKAKLQIAQ--GRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMET 570 (713)
Q Consensus 493 ~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (713)
+.-+.++..++..+| .+..+|...-.++... .++..-....+++++.++.+...|.-...+..
T Consensus 91 dneld~~~~~lk~~P--K~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~------------- 155 (328)
T COG5536 91 DNELDFLDEALKDNP--KNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLR------------- 155 (328)
T ss_pred hcHHHHHHHHHhcCC--chhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeee-------------
Confidence 334555666666666 3444444443333332 44555566667777776655322221100000
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHH---HHHHHHcCC------HHHHHHHHHHHHhcCCCCHHHHHH
Q 035707 571 WHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHST---GLLYEAKGL------QQEALVSFRKALDAEPNHVPSLVS 641 (713)
Q Consensus 571 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l---g~~~~~~g~------~~eA~~~~~~al~~~p~~~~~~~~ 641 (713)
-+.-......+..-.++-..++..++.+..+|... -......|+ +++-+++.-.++-.+|++..+|..
T Consensus 156 ---~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y 232 (328)
T COG5536 156 ---TIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGY 232 (328)
T ss_pred ---cchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhH
Confidence 01111222333334555566778888888888776 222333443 455566666677778998888877
Q ss_pred HHHHHHH
Q 035707 642 IARVLRQ 648 (713)
Q Consensus 642 la~~~~~ 648 (713)
+-.+...
T Consensus 233 ~r~~~~~ 239 (328)
T COG5536 233 LRGVSSE 239 (328)
T ss_pred HHHHhcc
Confidence 7655433
No 455
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=44.28 E-value=3.5e+02 Score=27.33 Aligned_cols=101 Identities=10% Similarity=0.105 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC-----CchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHH-H
Q 035707 441 PYIIYHLCLENAEQRKLDVALYYAKKLLNLEAR-----SNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGE-L 514 (713)
Q Consensus 441 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~ 514 (713)
.+++...+..|++.|+-+.|.+.+++.....-. +.......+|..|....-..+.++..+..++...+|+... .
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 578999999999999999999999988764322 1113456677777777667777777777777777665432 3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 035707 515 LRTKAKLQIAQGRLKNAIETYVNLLAV 541 (713)
Q Consensus 515 ~~~la~~~~~~g~~~~A~~~~~~~l~~ 541 (713)
-...|.......++.+|-..|-..+..
T Consensus 184 KvY~Gly~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 184 KVYQGLYCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHccc
Confidence 334455666677788887777766543
No 456
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=42.88 E-value=1.1e+02 Score=32.07 Aligned_cols=44 Identities=18% Similarity=0.037 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 035707 584 WRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRK 627 (713)
Q Consensus 584 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 627 (713)
.-+|+.+++.++..+|.+......+..+|...|-.+.|...|..
T Consensus 199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 45688888888999999999999999999999999999888865
No 457
>PRK12798 chemotaxis protein; Reviewed
Probab=42.78 E-value=4.3e+02 Score=27.84 Aligned_cols=172 Identities=11% Similarity=-0.054 Sum_probs=107.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh-cCCchHHHHHH-HHHHHHcCCHHHHHHHHHHHhhccCCCCcH-HHHH
Q 035707 440 DPYIIYHLCLENAEQRKLDVALYYAKKLLNLE-ARSNVKGYLLL-ARVLSAQKQFADAESVINDSLDQTGKWDQG-ELLR 516 (713)
Q Consensus 440 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~~ 516 (713)
+.+.-..-|..-+-.|+-.+|.+.+..+-... |... ..+..| .-......+..+|+..|+.+--..|..-.- -++.
T Consensus 111 ~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~l-g~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALR 189 (421)
T PRK12798 111 NFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAEL-GAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALR 189 (421)
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchh-hhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 44555556666667888888888776653322 2112 233333 334455678899999999988777732111 2555
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 035707 517 TKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKA 596 (713)
Q Consensus 517 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 596 (713)
.-..+....|+.++...+-.+-+.....+ +.-.+.+...+......++-..- ..+..++.
T Consensus 190 Rsi~la~~~g~~~rf~~la~~Y~rRF~~S-------------------~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls 249 (421)
T PRK12798 190 RSLFIAAQLGDADKFEALARNYLRRFRHS-------------------PYASQFAQRFVDLVVRLDDEIRD-ARLVEILS 249 (421)
T ss_pred HhhHHHHhcCcHHHHHHHHHHHHHHhccC-------------------chHHHHHHHHHHHHHhccccccH-HHHHHHHH
Confidence 66666788899998888888877775443 33344455555555554432222 22444444
Q ss_pred c-CCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 035707 597 I-NPYS-ASGWHSTGLLYEAKGLQQEALVSFRKALDAE 632 (713)
Q Consensus 597 ~-~p~~-~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 632 (713)
. +|.. ..+|..+++.-...|+.+-|.-.-++++.+.
T Consensus 250 ~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~ 287 (421)
T PRK12798 250 FMDPERQRELYLRIARAALIDGKTELARFASERALKLA 287 (421)
T ss_pred hcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhc
Confidence 3 4432 4577788888888899998888888888875
No 458
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=42.61 E-value=1.5e+02 Score=25.61 Aligned_cols=51 Identities=12% Similarity=0.020 Sum_probs=22.3
Q ss_pred HHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 035707 579 TSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKAL 629 (713)
Q Consensus 579 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 629 (713)
...|+-++-.+.+....+-...+|..+..+|.+|.+.|+..++-+.+.+|-
T Consensus 97 v~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 97 VKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp HHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 344444444444444443333345555555555555555555555555543
No 459
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.58 E-value=3.7e+02 Score=27.08 Aligned_cols=196 Identities=14% Similarity=0.005 Sum_probs=0.0
Q ss_pred HHHhcCChhHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHhhcCCCCCCCcccccccccccCCchhHHHHHHHHHH---
Q 035707 213 LYKLAGDPDETILSYRRALLYYWNLDIETTARIEKKFAVFLLYSGTDASPPNLRLQMELSFVPRNNIEEAVLLLLIL--- 289 (713)
Q Consensus 213 ~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~i~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~eeA~~ll~~~--- 289 (713)
.+...|+...-...|++++......+.....-..+.+-.......+-..-.....+....-.+.-..+-.-.+....
T Consensus 11 ~~~~~g~hk~~~~qyr~~l~~~lt~~~~el~e~~k~~id~~~~~~vslvvsrqllsl~~~~l~~l~~e~~Kei~~~~l~~ 90 (399)
T KOG1497|consen 11 LIFAEGDHKDQAEQYRQLLAKVLTNNGMELLEALKRFIDAIVNENVSLVVSRQLLSLFDVELSILEDELRKEISHFTLEK 90 (399)
T ss_pred HHHhcCchhhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHh
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHhcC
Q 035707 290 LKKIVLGKIEWDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICAENK 369 (713)
Q Consensus 290 ~~~~~l~~~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~~g 369 (713)
+...+.+-......+..+|+..|-+.++++.|.+.+.-+-......... ...-...++.+|++|++.+
T Consensus 91 iq~rvisfeEqv~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d------------~~~kl~l~iriarlyLe~~ 158 (399)
T KOG1497|consen 91 IQPRVISFEEQVASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYD------------VEQKLLLCIRIARLYLEDD 158 (399)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhh------------hHHHHHHHHHHHHHHHhcC
Q ss_pred CChHHHHHHHHHH--HHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHH
Q 035707 370 VCIEEGITYARKA--LSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAE 433 (713)
Q Consensus 370 ~~~~~A~~~~~~a--l~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 433 (713)
+.. +|..+..++ +. ....|+.+....-..-+.++ ...+++-+|...|.+..
T Consensus 159 d~v-eae~~inRaSil~-a~~~Ne~Lqie~kvc~ARvl-----------D~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 159 DKV-EAEAYINRASILQ-AESSNEQLQIEYKVCYARVL-----------DYKRKFLEAAQRYYELS 211 (399)
T ss_pred cHH-HHHHHHHHHHHhh-hcccCHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH
No 460
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=41.13 E-value=52 Score=25.11 Aligned_cols=18 Identities=28% Similarity=0.512 Sum_probs=13.4
Q ss_pred hCCHHHHHHHHHHHHHHH
Q 035707 525 QGRLKNAIETYVNLLAVL 542 (713)
Q Consensus 525 ~g~~~~A~~~~~~~l~~~ 542 (713)
.|++++|+.+|..+++..
T Consensus 19 ~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 19 KGNAEEAIELYTEAVELC 36 (75)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 577788888888777763
No 461
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=40.69 E-value=7.4e+02 Score=29.98 Aligned_cols=17 Identities=12% Similarity=-0.119 Sum_probs=10.3
Q ss_pred HHhcCChhHHHHHHHHH
Q 035707 214 YKLAGDPDETILSYRRA 230 (713)
Q Consensus 214 ~~~~g~~~eA~~~~~~a 230 (713)
+...++|.+|+...|+=
T Consensus 687 ~l~~~~y~~AF~~~Rkh 703 (1265)
T KOG1920|consen 687 LLDRLRYKEAFEVMRKH 703 (1265)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45566677666655553
No 462
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=40.68 E-value=44 Score=25.52 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=13.3
Q ss_pred HcCCHHHHHHHHHHHHhc
Q 035707 614 AKGLQQEALVSFRKALDA 631 (713)
Q Consensus 614 ~~g~~~eA~~~~~~al~~ 631 (713)
..|++++|+.+|..+++.
T Consensus 18 ~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 18 EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 467888888888877763
No 463
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=39.97 E-value=1.2e+02 Score=25.63 Aligned_cols=65 Identities=14% Similarity=0.074 Sum_probs=46.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---------------ChhHHHHHHHHHHHcCCHHHHHHHHHHH----Hhc
Q 035707 571 WHDLANVYTSLSQWRDAEVCLSKSKAINPY---------------SASGWHSTGLLYEAKGLQQEALVSFRKA----LDA 631 (713)
Q Consensus 571 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~g~~~eA~~~~~~a----l~~ 631 (713)
+..+|+...+.+++-.++-+|++++.+..+ ......+++..+..+|+.+=.+++++-| +.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 456788888889999999999988765321 1234678888889999888888887654 345
Q ss_pred CCCC
Q 035707 632 EPNH 635 (713)
Q Consensus 632 ~p~~ 635 (713)
-|..
T Consensus 84 iPQC 87 (140)
T PF10952_consen 84 IPQC 87 (140)
T ss_pred ccCC
Confidence 5543
No 464
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=39.82 E-value=4.5e+02 Score=27.92 Aligned_cols=88 Identities=16% Similarity=0.194 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 035707 604 GWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYK 683 (713)
Q Consensus 604 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 683 (713)
.+..|=.+|.+.|+..+|++.-...+-.+|++-.+..++-.-....|..+ ..+..+.+.....|+.++.-++
T Consensus 135 py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq~~l~~s~--------d~l~DlE~~~~~~~Fir~v~~y 206 (471)
T KOG4459|consen 135 PYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQTMLGVSE--------DELTDLERREHEQWFIRGVRLY 206 (471)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHHhccCCCc--------ccccccccchHHHHHHHHhhhc
Confidence 46667788999999999999988888889999988888876655555543 1223345566677888887777
Q ss_pred HhCCCCHHHHHHHHHHHH
Q 035707 684 TYAGASALEAVECFEAAA 701 (713)
Q Consensus 684 ~~g~~~~~~A~~~~~~a~ 701 (713)
..++ ++.....++.|+
T Consensus 207 ~~~d--~~~~v~~ve~AL 222 (471)
T KOG4459|consen 207 SGED--PRQCVPEVELAL 222 (471)
T ss_pred cccC--chhcchhHHHHH
Confidence 7777 776666555554
No 465
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=39.79 E-value=3.9e+02 Score=26.51 Aligned_cols=30 Identities=10% Similarity=0.127 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 035707 567 EMETWHDLANVYTSLSQWRDAEVCLSKSKA 596 (713)
Q Consensus 567 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 596 (713)
..++|.++|..|.+.++.+.+.+.+.+.+.
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~ 143 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMR 143 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 356666666666666666666666655544
No 466
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=39.42 E-value=3.1e+02 Score=25.60 Aligned_cols=118 Identities=10% Similarity=-0.042 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHH
Q 035707 440 DPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKA 519 (713)
Q Consensus 440 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la 519 (713)
+...+..+-..+...||++.|-++|--++...+-+....|..=+.++...+.-....+.++......+ ..........
T Consensus 40 Hl~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~--~~~~~~~~~~ 117 (199)
T PF04090_consen 40 HLRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYP--SRKAFNQYYN 117 (199)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHH--Hhhhccchhh
Q ss_pred HH------------------------HHHhCC--------HHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccH
Q 035707 520 KL------------------------QIAQGR--------LKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLE 567 (713)
Q Consensus 520 ~~------------------------~~~~g~--------~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (713)
.. +.-+.. +++.++-.++++-.-| ..++
T Consensus 118 ~~~~~pvfrsGs~t~tp~y~~~~LW~~l~~~~~~~~~~~~~~~l~~ri~Elvl~PP--------------------y~d~ 177 (199)
T PF04090_consen 118 RRIIAPVFRSGSRTHTPLYAITWLWILLIQEEDRESELDSYQQLIERIDELVLSPP--------------------YMDD 177 (199)
T ss_pred hhcccccccCCCcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhcCCC--------------------CCCc
Q ss_pred HHHHHHHHHHHH
Q 035707 568 METWHDLANVYT 579 (713)
Q Consensus 568 ~~~~~~la~~~~ 579 (713)
++.|+..|.++.
T Consensus 178 ~el~~i~~m~~L 189 (199)
T PF04090_consen 178 GELWFIRGMCHL 189 (199)
T ss_pred HHHHHHHHHHHH
No 467
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.80 E-value=1.8e+02 Score=30.46 Aligned_cols=25 Identities=24% Similarity=0.139 Sum_probs=21.2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHc
Q 035707 676 YNLGLLYKTYAGASALEAVECFEAAAL 702 (713)
Q Consensus 676 ~~lg~~~~~~g~~~~~~A~~~~~~a~~ 702 (713)
..-|.+.+..|+ -++|.++++.+..
T Consensus 271 LLQGV~~yHqg~--~deAye~le~a~~ 295 (568)
T KOG2561|consen 271 LLQGVVAYHQGQ--RDEAYEALESAHA 295 (568)
T ss_pred HHHHHHHHHcCC--cHHHHHHHHHHHH
Confidence 345889999999 9999999998865
No 468
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.43 E-value=7.8e+02 Score=29.02 Aligned_cols=166 Identities=14% Similarity=0.070 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhh----cCCchHHHHHHHHHHHHcCCH--HHHHHHHHHHhhccCCC-------
Q 035707 443 IIYHLCLENAEQRKLDVALYYAKKLLNLE----ARSNVKGYLLLARVLSAQKQF--ADAESVINDSLDQTGKW------- 509 (713)
Q Consensus 443 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~------- 509 (713)
-+..|+..|...|+.++|++.+.+...-. +... ..+-.+-..+...+.. +-..++-+-.++.+|..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~-~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~ 584 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQL-DGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTS 584 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchh-hhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeec
Confidence 46789999999999999999999988733 2222 3333444444444443 44444444444444310
Q ss_pred CcH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHH-----
Q 035707 510 DQG----ELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTS----- 580 (713)
Q Consensus 510 ~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----- 580 (713)
++. ..-.....-+.....++-++.+++.++..+.... ...+..++..|..
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~---------------------~~lht~ll~ly~e~v~~~ 643 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTS---------------------TLLHTVLLKLYLEKVLEQ 643 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccc---------------------hHHHHHHHHHHHHHHhhc
Confidence 000 0111222334666777888888888887654321 2222233333322
Q ss_pred ---CCCHHHHHHH--HHHHHh-------cCCC-------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 035707 581 ---LSQWRDAEVC--LSKSKA-------INPY-------SASGWHSTGLLYEAKGLQQEALVSFRKALD 630 (713)
Q Consensus 581 ---~g~~~~A~~~--~~~al~-------~~p~-------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 630 (713)
.++-+++.+. .++... .+|+ ....|...+.++.+.|+.++|+..|-..+.
T Consensus 644 ~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 644 ASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred cCchhccccchhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 1112233333 222211 1221 134677788888899999999999877664
No 469
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=36.31 E-value=6e+02 Score=27.69 Aligned_cols=106 Identities=21% Similarity=0.112 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhhCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHH-hhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 035707 425 ALVALETAEKTMRERDPYIIY-HLCLENAEQRKLDVALYYAKKLL-NLEARSNVKGYLLLARVLSAQKQFADAESVINDS 502 (713)
Q Consensus 425 A~~~~~~al~~~~p~~~~~~~-~la~~~~~~g~~~~A~~~~~~~l-~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 502 (713)
+..++.++- ...++....|. .-+.+..+.|+..+|...+.++- .+.|....+.-...+.+....+++..|...+.+.
T Consensus 47 s~~yl~qa~-qs~~~~~~~~~llAa~al~~e~k~~qA~~Ll~ql~~~Ltd~Q~~~~~LL~ael~la~~q~~~Al~~L~~~ 125 (604)
T COG3107 47 SQFYLQQAQ-QSSGEQQNDWLLLAARALVEEGKTAQAQALLNQLPQELTDAQRAEKSLLAAELALAQKQPAAALQQLAKL 125 (604)
T ss_pred HHHHHHHHh-hcCchhhhhHHHHHHHHHHHcCChHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhccChHHHHHHHhhc
Confidence 334445555 44454444443 44678889999999999999876 4444443345566788999999999999999886
Q ss_pred hhcc-CCCCcHHHHHHHHHHHHHhCCHHHH
Q 035707 503 LDQT-GKWDQGELLRTKAKLQIAQGRLKNA 531 (713)
Q Consensus 503 l~~~-p~~~~~~~~~~la~~~~~~g~~~~A 531 (713)
..-. +.......|...+.+....|+.-+|
T Consensus 126 ~~~~ls~~Qq~Ry~q~~a~a~ea~~~~~~a 155 (604)
T COG3107 126 LPADLSQNQQARYYQARADALEARGDSIDA 155 (604)
T ss_pred chhhcCHHHHHHHHHHHHHHHhcccchHHH
Confidence 5443 2112344555555555555544333
No 470
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=36.24 E-value=64 Score=24.94 Aligned_cols=16 Identities=38% Similarity=0.574 Sum_probs=10.5
Q ss_pred cCCHHHHHHHHHHHHh
Q 035707 615 KGLQQEALVSFRKALD 630 (713)
Q Consensus 615 ~g~~~eA~~~~~~al~ 630 (713)
.|+.++|+.+|++++.
T Consensus 21 ~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 21 WGDKEQALAHYRKGLR 36 (79)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4666777777766654
No 471
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=35.70 E-value=1.7e+02 Score=22.36 Aligned_cols=28 Identities=14% Similarity=-0.077 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 035707 569 ETWHDLANVYTSLSQWRDAEVCLSKSKA 596 (713)
Q Consensus 569 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 596 (713)
..+...|.-+-..|++.+|+.+|+++++
T Consensus 7 ~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 7 RKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3344455555667777777777666553
No 472
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.34 E-value=2.2e+02 Score=23.06 Aligned_cols=39 Identities=21% Similarity=0.265 Sum_probs=31.5
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 035707 601 SASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSL 639 (713)
Q Consensus 601 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 639 (713)
-|..+..+|.+|...|+.+.|..-|+.--.+.|++....
T Consensus 71 pPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fm 109 (121)
T COG4259 71 PPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFM 109 (121)
T ss_pred CCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHH
Confidence 356777899999999999999999988888888876543
No 473
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.22 E-value=5.5e+02 Score=26.92 Aligned_cols=93 Identities=15% Similarity=0.060 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------CCC
Q 035707 568 METWHDLANVYTSLSQWRDAEVCLSKSKAINPY---SASGWHSTGLLYEAKGLQQEALVSFRKALDA----------EPN 634 (713)
Q Consensus 568 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~----------~p~ 634 (713)
-.++..+|.-|...|+.+.|+++|-++...... ....|.++-.+-...|+|..-..+-.++.+. -|.
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 567888999999999999999999996554332 3456777788888889988877777776653 122
Q ss_pred CHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 035707 635 HVPSLVSIARVLRQIGGESMATIRCFLTDA 664 (713)
Q Consensus 635 ~~~~~~~la~~~~~~g~~~l~~A~~~~~~a 664 (713)
- ....-|.+....+++. .|..+|-.+
T Consensus 230 k--l~C~agLa~L~lkkyk--~aa~~fL~~ 255 (466)
T KOG0686|consen 230 K--LKCAAGLANLLLKKYK--SAAKYFLLA 255 (466)
T ss_pred c--hHHHHHHHHHHHHHHH--HHHHHHHhC
Confidence 2 3333444455555665 666665443
No 474
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=35.21 E-value=1e+02 Score=18.47 Aligned_cols=27 Identities=33% Similarity=0.374 Sum_probs=17.8
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 035707 658 RCFLTDALRLDRTNTTAWYNLGLLYKT 684 (713)
Q Consensus 658 ~~~~~~al~~~p~~~~~~~~lg~~~~~ 684 (713)
+.+..+++..+|.+..+|...-.+...
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll~~ 29 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLLKQ 29 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHHHH
Confidence 455566777777777777776665544
No 475
>PRK09687 putative lyase; Provisional
Probab=35.20 E-value=4.7e+02 Score=26.07 Aligned_cols=236 Identities=7% Similarity=-0.064 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCH----HHHHHH
Q 035707 423 SQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQF----ADAESV 498 (713)
Q Consensus 423 ~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~----~~A~~~ 498 (713)
....+.+...+ ...+..........+...|. .++...+.+++. ..++ .....-+.++...|+. .++...
T Consensus 22 ~~~~~~L~~~L---~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~--~~d~-~vR~~A~~aLg~lg~~~~~~~~a~~~ 94 (280)
T PRK09687 22 KLNDDELFRLL---DDHNSLKRISSIRVLQLRGG-QDVFRLAIELCS--SKNP-IERDIGADILSQLGMAKRCQDNVFNI 94 (280)
T ss_pred hccHHHHHHHH---hCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh--CCCH-HHHHHHHHHHHhcCCCccchHHHHHH
Confidence 33444444444 34556666666777766664 344444444432 2234 5666667777777763 467777
Q ss_pred HHHHhhccCCCCcHHHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHH
Q 035707 499 INDSLDQTGKWDQGELLRTKAKLQIAQGRL-----KNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHD 573 (713)
Q Consensus 499 ~~~al~~~p~~~~~~~~~~la~~~~~~g~~-----~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (713)
+...+..++ +..+....+..+...+.. ..+++.+..++.- .+..+...
T Consensus 95 L~~l~~~D~---d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D------------------------~~~~VR~~ 147 (280)
T PRK09687 95 LNNLALEDK---SACVRASAINATGHRCKKNPLYSPKIVEQSQITAFD------------------------KSTNVRFA 147 (280)
T ss_pred HHHHHhcCC---CHHHHHHHHHHHhcccccccccchHHHHHHHHHhhC------------------------CCHHHHHH
Confidence 777655554 344444444444333321 2223332222211 12556666
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC
Q 035707 574 LANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKG-LQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGE 652 (713)
Q Consensus 574 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 652 (713)
.+..+...++ .+|+..+-.++. ++ ++.+...-+..+...+ ...++...+.+++. ..+..+...-...+.+.|+.
T Consensus 148 a~~aLg~~~~-~~ai~~L~~~L~-d~-~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~--D~~~~VR~~A~~aLg~~~~~ 222 (280)
T PRK09687 148 VAFALSVIND-EAAIPLLINLLK-DP-NGDVRNWAAFALNSNKYDNPDIREAFVAMLQ--DKNEEIRIEAIIGLALRKDK 222 (280)
T ss_pred HHHHHhccCC-HHHHHHHHHHhc-CC-CHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc--CCChHHHHHHHHHHHccCCh
Confidence 6666666665 678888888886 23 3344433333333332 24578888888773 33455566666666666664
Q ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCC
Q 035707 653 SMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALLEESA 707 (713)
Q Consensus 653 ~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~ 707 (713)
.|+..+-+.++... ........+-..|. .+|+..+.+.+..+||.
T Consensus 223 ---~av~~Li~~L~~~~----~~~~a~~ALg~ig~---~~a~p~L~~l~~~~~d~ 267 (280)
T PRK09687 223 ---RVLSVLIKELKKGT----VGDLIIEAAGELGD---KTLLPVLDTLLYKFDDN 267 (280)
T ss_pred ---hHHHHHHHHHcCCc----hHHHHHHHHHhcCC---HhHHHHHHHHHhhCCCh
Confidence 79998888877422 34566777778888 57999999988877754
No 476
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=34.60 E-value=4.2e+02 Score=25.43 Aligned_cols=19 Identities=21% Similarity=0.211 Sum_probs=11.6
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q 035707 616 GLQQEALVSFRKALDAEPN 634 (713)
Q Consensus 616 g~~~eA~~~~~~al~~~p~ 634 (713)
++...|+.++++|+.++|+
T Consensus 192 ~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 192 ETLQLALALLQRAFQLNDK 210 (230)
T ss_pred ccHHHHHHHHHHHHHhCCC
Confidence 4555666666666666654
No 477
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=33.01 E-value=58 Score=31.17 Aligned_cols=33 Identities=12% Similarity=0.105 Sum_probs=24.5
Q ss_pred HHHHHHHHHHH---------HhCCHHHHHHHHHHHHHHHhhh
Q 035707 513 ELLRTKAKLQI---------AQGRLKNAIETYVNLLAVLQFR 545 (713)
Q Consensus 513 ~~~~~la~~~~---------~~g~~~~A~~~~~~~l~~~~~~ 545 (713)
..+...|..+. ..+++..|+.++++++.++|+.
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 35556666663 4567889999999999998753
No 478
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=32.76 E-value=6.9e+02 Score=27.29 Aligned_cols=185 Identities=18% Similarity=0.235 Sum_probs=103.0
Q ss_pred cCCHHHHHH-HHHHHHhhhcCCchHHHHHH-HHHHHHcCCHHHHHHHHHHHh-hccCCCCcHHHHHHHHHHHHHhCCHHH
Q 035707 454 QRKLDVALY-YAKKLLNLEARSNVKGYLLL-ARVLSAQKQFADAESVINDSL-DQTGKWDQGELLRTKAKLQIAQGRLKN 530 (713)
Q Consensus 454 ~g~~~~A~~-~~~~~l~~~p~~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~~~la~~~~~~g~~~~ 530 (713)
+|+.....+ +..++-...++.. ..|..+ +.++.+.|+...|...+.+.- .+.+. .....-...+.+...+.++..
T Consensus 40 q~~a~a~s~~yl~qa~qs~~~~~-~~~~llAa~al~~e~k~~qA~~Ll~ql~~~Ltd~-Q~~~~~LL~ael~la~~q~~~ 117 (604)
T COG3107 40 QGTANASSQFYLQQAQQSSGEQQ-NDWLLLAARALVEEGKTAQAQALLNQLPQELTDA-QRAEKSLLAAELALAQKQPAA 117 (604)
T ss_pred cCCcchhHHHHHHHHhhcCchhh-hhHHHHHHHHHHHcCChHHHHHHHHhccccCCHH-HHHHHHHHHHHHHHhccChHH
Confidence 444444333 3444444444444 455444 578899999999999999876 44431 233445567888899999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---------
Q 035707 531 AIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYS--------- 601 (713)
Q Consensus 531 A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--------- 601 (713)
|.+.+.+...-.-. .......|...+.+....|+.=+|. +.-+..+|-.
T Consensus 118 Al~~L~~~~~~~ls-------------------~~Qq~Ry~q~~a~a~ea~~~~~~a~---rari~~~~lL~~k~~q~ni 175 (604)
T COG3107 118 ALQQLAKLLPADLS-------------------QNQQARYYQARADALEARGDSIDAA---RARIAQDPLLSGKAKQANI 175 (604)
T ss_pred HHHHHhhcchhhcC-------------------HHHHHHHHHHHHHHHhcccchHHHH---HHHHHhhhhccchhHHHhH
Confidence 99998876543210 0112555666666666665543333 3333333321
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCC--CHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHH
Q 035707 602 ASGWHSTGLLYEAKGLQQEALVSFRKALD--AEPN--HVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAW 675 (713)
Q Consensus 602 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~p~--~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~ 675 (713)
..+|..++ + . .=...+. .+++ ....|..++.+|...+... +.-..-+++....+|.+|.+.
T Consensus 176 d~tW~ll~-------~--~---~~~~VIn~sa~e~~~~L~GWL~L~rv~~~~~~~p-~qlk~~i~~Wq~~yPqhPaA~ 240 (604)
T COG3107 176 DKTWQLLS-------E--Q---ANTGVINNSADEGNAALQGWLDLARVYKDNGSDP-PQLKAGIEDWQKRYPQHPAAK 240 (604)
T ss_pred HHHHHHhh-------h--h---ccccceecccCCcccccchHHHHHHHHHhcccCH-HHHHHHHHHHHhcCCCCchhh
Confidence 11222222 0 0 0001111 2233 3467888888888877653 344555556666677776553
No 479
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=32.56 E-value=79 Score=19.28 Aligned_cols=29 Identities=38% Similarity=0.486 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHh----CCCCHHHHHHHHHHHHcc
Q 035707 673 TAWYNLGLLYKTY----AGASALEAVECFEAAALL 703 (713)
Q Consensus 673 ~~~~~lg~~~~~~----g~~~~~~A~~~~~~a~~l 703 (713)
.+.+.||.+|..- .+ ..+|..+|+++.+.
T Consensus 2 ~a~~~lg~~~~~G~g~~~d--~~~A~~~~~~Aa~~ 34 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKD--LEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHHcCCCCCcC--HHHHHHHHHHHHHc
Confidence 3556666666532 24 77777777777653
No 480
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=31.18 E-value=3.4e+02 Score=23.22 Aligned_cols=78 Identities=9% Similarity=0.063 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC--------------c-hHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 035707 442 YIIYHLCLENAEQRKLDVALYYAKKLLNLEARS--------------N-VKGYLLLARVLSAQKQFADAESVINDSLDQT 506 (713)
Q Consensus 442 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~--------------~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 506 (713)
..+..+-.++...|+.+....+.++.-.++.+. | ...+..+..++...|++..|+++++...+.+
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 445566677778888888877777765443211 1 1466667777777788888888888777776
Q ss_pred CCCCcHHHHHHHH
Q 035707 507 GKWDQGELLRTKA 519 (713)
Q Consensus 507 p~~~~~~~~~~la 519 (713)
|-+-....|..+-
T Consensus 83 ~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 83 PIPIPKEFWRRLL 95 (126)
T ss_pred CCCCCHHHHHHHH
Confidence 5433444554443
No 481
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=31.05 E-value=93 Score=19.46 Aligned_cols=31 Identities=32% Similarity=0.340 Sum_probs=17.3
Q ss_pred HHHHHHH--HHHHHhC--CC-CHHHHHHHHHHHHcc
Q 035707 673 TAWYNLG--LLYKTYA--GA-SALEAVECFEAAALL 703 (713)
Q Consensus 673 ~~~~~lg--~~~~~~g--~~-~~~~A~~~~~~a~~l 703 (713)
.+.+.+| .+|..-. -. +.++|..+|+++.+.
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 4566677 4333322 10 267777777777653
No 482
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=30.48 E-value=6.5e+02 Score=26.33 Aligned_cols=54 Identities=13% Similarity=-0.117 Sum_probs=39.2
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCC-----hhHHHHHH--HHHHHcCCHHHHHHHHHH
Q 035707 574 LANVYTSLSQWRDAEVCLSKSKAINPYS-----ASGWHSTG--LLYEAKGLQQEALVSFRK 627 (713)
Q Consensus 574 la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg--~~~~~~g~~~eA~~~~~~ 627 (713)
.+..++..++|..|...|+++....+.. ...+..+. ..+...-++++|.+.+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 4557788999999999999999875421 22334444 444566789999999986
No 483
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=29.40 E-value=1.8e+02 Score=32.71 Aligned_cols=131 Identities=9% Similarity=0.005 Sum_probs=75.8
Q ss_pred cCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 035707 368 NKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHL 447 (713)
Q Consensus 368 ~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~l 447 (713)
.|+-+ .|+...-.+++...+-.+ +.+++.|.+|- ...-.+.+...+..+.|+++|+++. ...|... .-.++
T Consensus 256 ~GDRa-kAL~~~l~lve~eg~vap----Dm~Cl~GRIYK--DmF~~S~ytDa~s~~~a~~WyrkaF-eveP~~~-sGIN~ 326 (1226)
T KOG4279|consen 256 PGDRA-KALNTVLPLVEKEGPVAP----DMYCLCGRIYK--DMFIASNYTDAESLNHAIEWYRKAF-EVEPLEY-SGINL 326 (1226)
T ss_pred CccHH-HHHHHHHHHHHhcCCCCC----ceeeeechhhh--hhhhccCCcchhhHHHHHHHHHHHh-ccCchhh-ccccH
Confidence 45666 787777777764445455 88888888882 2233334456677899999999999 8888543 22344
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHhhhc-----CCc--hHHHHHHHH---HHHHcCCHHHHHHHHHHHhhccC
Q 035707 448 CLENAEQRK-LDVALYYAKKLLNLEA-----RSN--VKGYLLLAR---VLSAQKQFADAESVINDSLDQTG 507 (713)
Q Consensus 448 a~~~~~~g~-~~~A~~~~~~~l~~~p-----~~~--~~~~~~la~---~~~~~g~~~~A~~~~~~al~~~p 507 (713)
+..+...|+ ++...+.=.-.++++. +.. ...|...|. +-.-.+++.+|+..-+.+.++.|
T Consensus 327 atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~ 397 (1226)
T KOG4279|consen 327 ATLLRAAGEHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKP 397 (1226)
T ss_pred HHHHHHhhhhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCC
Confidence 544444443 3333333222232221 000 011111121 12234789999999999888875
No 484
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=29.26 E-value=65 Score=24.61 Aligned_cols=16 Identities=13% Similarity=0.077 Sum_probs=10.8
Q ss_pred hcCCChHHHHHHHHHHHh
Q 035707 649 IGGESMATIRCFLTDALR 666 (713)
Q Consensus 649 ~g~~~l~~A~~~~~~al~ 666 (713)
.|+++ +|..+|..+++
T Consensus 19 ~~~y~--eA~~~Y~~~i~ 34 (75)
T cd02677 19 EGDYE--AAFEFYRAGVD 34 (75)
T ss_pred HhhHH--HHHHHHHHHHH
Confidence 36665 77777777665
No 485
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=29.21 E-value=2.4e+02 Score=30.77 Aligned_cols=62 Identities=13% Similarity=0.021 Sum_probs=26.1
Q ss_pred ChhHHHHHHHHHHHc--CCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 035707 601 SASGWHSTGLLYEAK--GLQQEALVSFRKALDA-----EPNHVPSLVSIARVLRQIGGESMATIRCFLTDA 664 (713)
Q Consensus 601 ~~~~~~~lg~~~~~~--g~~~eA~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~a 664 (713)
.|.++.+||.+.... ..-..++.+|.+++.. +..++.-|..+|-.+++.+++. +|+..+.++
T Consensus 276 YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~--eA~~~Wa~a 344 (618)
T PF05053_consen 276 YPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYR--EALRSWAEA 344 (618)
T ss_dssp -HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HH--HHHHHHHHH
T ss_pred CchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHH--HHHHHHHHH
Confidence 345555555554322 1233445555555542 2233444455555555555544 455444433
No 486
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=28.05 E-value=1.4e+02 Score=23.03 Aligned_cols=17 Identities=29% Similarity=0.102 Sum_probs=9.8
Q ss_pred HcCCHHHHHHHHHHHHh
Q 035707 453 EQRKLDVALYYAKKLLN 469 (713)
Q Consensus 453 ~~g~~~~A~~~~~~~l~ 469 (713)
..|+.++|+.+|++++.
T Consensus 20 E~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 20 EWGDKEQALAHYRKGLR 36 (79)
T ss_pred hcCCHHHHHHHHHHHHH
Confidence 34566666666666554
No 487
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=27.22 E-value=1.3e+02 Score=22.31 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=14.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 035707 608 TGLLYEAKGLQQEALVSFRKALD 630 (713)
Q Consensus 608 lg~~~~~~g~~~eA~~~~~~al~ 630 (713)
.|.-+...|++++|+.+|.+++.
T Consensus 11 ~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 11 KAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444556777777777766554
No 488
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=25.75 E-value=2.2e+02 Score=32.28 Aligned_cols=106 Identities=15% Similarity=0.134 Sum_probs=78.9
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHh
Q 035707 519 AKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTS--LSQWRDAEVCLSKSKA 596 (713)
Q Consensus 519 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~ 596 (713)
+...+..+++..+.-.|...+.+.|. ++........+.+.++.. .|+|..++.--.-++.
T Consensus 60 ~n~~~~K~d~~~~~~~~~~~~~llp~------------------~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~ 121 (748)
T KOG4151|consen 60 GNKLFQKRDYEGAMFRYDCAIKLLPK------------------DHHVVATLRSNQASCYMQLGLGEYPKAIPECELALE 121 (748)
T ss_pred hhHHhhhhhhhccchhhhhhheeccc------------------cchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhh
Confidence 44556667777777777777766553 244556666677777665 5688888888888888
Q ss_pred cCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 035707 597 INPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSI 642 (713)
Q Consensus 597 ~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 642 (713)
..|....+++..+..|...+..+-|++...-.....|.++.+..-.
T Consensus 122 ~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif 167 (748)
T KOG4151|consen 122 SQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIF 167 (748)
T ss_pred ccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHH
Confidence 8898888888889999999999999999777778889886554433
No 489
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=25.41 E-value=1.5e+02 Score=18.35 Aligned_cols=23 Identities=13% Similarity=0.374 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHH
Q 035707 584 WRDAEVCLSKSKAINPYSASGWHS 607 (713)
Q Consensus 584 ~~~A~~~~~~al~~~p~~~~~~~~ 607 (713)
++.|..+|++.+...| ++..|..
T Consensus 3 ~dRAR~IyeR~v~~hp-~~k~Wik 25 (32)
T PF02184_consen 3 FDRARSIYERFVLVHP-EVKNWIK 25 (32)
T ss_pred HHHHHHHHHHHHHhCC-CchHHHH
Confidence 4445555555555544 2334433
No 490
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=25.38 E-value=2.1e+02 Score=32.46 Aligned_cols=100 Identities=17% Similarity=0.110 Sum_probs=74.7
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCC----hhHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 035707 574 LANVYTSLSQWRDAEVCLSKSKAINPYS----ASGWHSTGLLYEA--KGLQQEALVSFRKALDAEPNHVPSLVSIARVLR 647 (713)
Q Consensus 574 la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~--~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~ 647 (713)
-+...++.+++.+|.--|..++.+-|.+ .....+.+.++.. .|++.+++.-..-++...|....++...+..|.
T Consensus 59 E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~ 138 (748)
T KOG4151|consen 59 EGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYE 138 (748)
T ss_pred hhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHH
Confidence 3456677788888877777788777743 3345556666654 468999999899999999999999999888998
Q ss_pred HhcCCChHHHHHHHHHHHhhCCCCHHHH
Q 035707 648 QIGGESMATIRCFLTDALRLDRTNTTAW 675 (713)
Q Consensus 648 ~~g~~~l~~A~~~~~~al~~~p~~~~~~ 675 (713)
..++.+ -|.+.+.-....+|.+..+.
T Consensus 139 al~k~d--~a~rdl~i~~~~~p~~~~~~ 164 (748)
T KOG4151|consen 139 ALNKLD--LAVRDLRIVEKMDPSNVSAS 164 (748)
T ss_pred HHHHHH--HHHHHHHHHhcCCCCcchHH
Confidence 888876 67777666667788875443
No 491
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.34 E-value=7.8e+02 Score=25.18 Aligned_cols=177 Identities=9% Similarity=-0.071 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 035707 425 ALVALETAEKTMRERDPYII---YHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVIND 501 (713)
Q Consensus 425 A~~~~~~al~~~~p~~~~~~---~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 501 (713)
+-..|+++. +.-|++.... ..-|.++...++|.+....+..+-....... -+..+-.+.-.+-.+..+-+.
T Consensus 40 ~~~~y~Q~~-q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~Kqqq-----D~~~~S~~~A~~vGst~vNDN 113 (449)
T COG3014 40 PKKAYEQSK-QFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQ-----DTQSASTRGAGYVGATMINDN 113 (449)
T ss_pred chhHHHHHH-HhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhh-----hhheeccccccchhhhhhccc
Q ss_pred HhhccCCCCcHH---HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh--------------------
Q 035707 502 SLDQTGKWDQGE---LLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKN-------------------- 558 (713)
Q Consensus 502 al~~~p~~~~~~---~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~-------------------- 558 (713)
..+.+| ...+ +...+|.-|+...+++.|.--|+++......-.+.+.....-...
T Consensus 114 i~~Y~g--~~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ~~AKe~~~~ei~ka~~e~ds~k~~~N~~~~~ae~s~ 191 (449)
T COG3014 114 VRAYGG--NIYEGVLINYYKALNYMLLNDSAKARVEFNRANERQRRAKEFYYEEVQKAIKEIDSSKHNINMERSRAEVSE 191 (449)
T ss_pred hhhcCc--hhHHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHH
Q ss_pred ------------cccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 035707 559 ------------RQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTG 609 (713)
Q Consensus 559 ------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 609 (713)
-.....-.++.+-+..+..+...+++.++...+.+..-+.|+.....-..+
T Consensus 192 ~i~n~Y~ny~~~yea~~~l~npYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd~~~~~~qY~ 254 (449)
T COG3014 192 ILNNTYSNYLDKYEAYQGLLNPYVSYLSGLFYALNGDVNKGLGYLNEAYGISQDQSPFVAQYL 254 (449)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHhcccCccHhHHHHHHHHHhccCchhhHHHHHhc
No 492
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=23.93 E-value=2.8e+02 Score=23.67 Aligned_cols=25 Identities=36% Similarity=0.349 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHH
Q 035707 512 GELLRTKAKLQIAQGRLKNAIETYV 536 (713)
Q Consensus 512 ~~~~~~la~~~~~~g~~~~A~~~~~ 536 (713)
+..+...|..+...|++.+|.++|+
T Consensus 99 AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 99 ALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3344444555555555555555443
No 493
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=23.90 E-value=5.2e+02 Score=23.03 Aligned_cols=115 Identities=17% Similarity=0.059 Sum_probs=66.6
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhh--------------hhhhh-ccc--CCCccHHHHHHHHHHHH
Q 035707 516 RTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGK--------------NLVKN-RQN--HDRSLEMETWHDLANVY 578 (713)
Q Consensus 516 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~--------------~~~~~-~~~--~~~~~~~~~~~~la~~~ 578 (713)
...++.....|+.++|+..+.++..........+.... .+... ... .............+.-.
T Consensus 6 i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~~ 85 (155)
T PF10938_consen 6 IQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANEL 85 (155)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHHH
Confidence 35567777788888888888887654322111111100 00000 011 11234466777888889
Q ss_pred HHCCCHHHHHHHHHHHHhc-C------CC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 035707 579 TSLSQWRDAEVCLSKSKAI-N------PY-SASGWHSTGLLYEAKGLQQEALVSFRKALD 630 (713)
Q Consensus 579 ~~~g~~~~A~~~~~~al~~-~------p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 630 (713)
.+.|+.+.|.+.++-+-.- . |- ........+..+...|++.+|...+..++.
T Consensus 86 l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 86 LKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 9999999999988865321 0 11 123345667778889999999999988874
No 494
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=23.86 E-value=3.2e+02 Score=30.30 Aligned_cols=78 Identities=9% Similarity=0.071 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHH
Q 035707 581 LSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCF 660 (713)
Q Consensus 581 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~ 660 (713)
....+.+....+.-+.-...+.......+..+...+..++|-.+|++.+..+|+ ..++..+.-+.+.|-.. .|...
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~ 96 (578)
T PRK15490 21 EKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAK--DAQLI 96 (578)
T ss_pred HhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhh--HHHHH
Confidence 344555555555544444444555566666677777777777778777777777 55666666666666654 56666
Q ss_pred HH
Q 035707 661 LT 662 (713)
Q Consensus 661 ~~ 662 (713)
++
T Consensus 97 ~~ 98 (578)
T PRK15490 97 LK 98 (578)
T ss_pred HH
Confidence 55
No 495
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=23.08 E-value=4.6e+02 Score=29.12 Aligned_cols=81 Identities=11% Similarity=0.086 Sum_probs=59.7
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHH
Q 035707 613 EAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALE 692 (713)
Q Consensus 613 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~ 692 (713)
.+....+.+....+.-+.-..........-+..+...+..+ +|-.+|++.+..+|+ ..++..+.-+.+.|- ..+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~ 92 (578)
T PRK15490 19 KQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETE--RAYALYETLIAQNND--EARYEYARRLYNTGL--AKD 92 (578)
T ss_pred HHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhH--hHHHHHHHHHHhCCc--chHHHHHHHHHhhhh--hhH
Confidence 34445666666666555444445556666777888888886 999999999999998 567788888888888 888
Q ss_pred HHHHHHH
Q 035707 693 AVECFEA 699 (713)
Q Consensus 693 A~~~~~~ 699 (713)
|...+++
T Consensus 93 ~~~~~~~ 99 (578)
T PRK15490 93 AQLILKK 99 (578)
T ss_pred HHHHHHH
Confidence 8877763
No 496
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=22.72 E-value=3.2e+02 Score=20.92 Aligned_cols=31 Identities=19% Similarity=0.048 Sum_probs=25.1
Q ss_pred HHHhhhhhhccCchHHHHHHHHHHHHHHHHh
Q 035707 154 IFLKTKSLQGLGRFEEACQSCKVILDTVEHA 184 (713)
Q Consensus 154 ~~~~~~~~~~~g~~~eA~~~~~~~l~~~~~~ 184 (713)
+..++.-+-+.|+|++|...|...++..-.+
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~ 39 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQLLIYA 39 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 4456777788999999999999998876554
No 497
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=22.68 E-value=1.7e+02 Score=22.48 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=13.3
Q ss_pred HHHHcCCHHHHHHHHHHHHh
Q 035707 611 LYEAKGLQQEALVSFRKALD 630 (713)
Q Consensus 611 ~~~~~g~~~eA~~~~~~al~ 630 (713)
-+-..|++++|+.+|..+++
T Consensus 15 e~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 15 QRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 34456777777777776654
No 498
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=22.29 E-value=8.3e+02 Score=24.76 Aligned_cols=79 Identities=13% Similarity=-0.039 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh--cCC--chHHHHHHHHHHHHcCCHHHHHHHHH
Q 035707 425 ALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLE--ARS--NVKGYLLLARVLSAQKQFADAESVIN 500 (713)
Q Consensus 425 A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~--~~~~~~~la~~~~~~g~~~~A~~~~~ 500 (713)
-++.+.+-. ...|+..+++|..+...+..|+|..|-.++-...... |+. ....|-.+| .-.-..+|+.|++-+.
T Consensus 114 ~l~~L~e~y-nf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlA-SEIL~qnWd~A~edL~ 191 (432)
T KOG2758|consen 114 NLQHLQEHY-NFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLA-SEILTQNWDGALEDLT 191 (432)
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHH-HHHHHhhHHHHHHHHH
Confidence 345555555 6678889999999999999999999988765544433 222 212333333 3334578999988887
Q ss_pred HHhhc
Q 035707 501 DSLDQ 505 (713)
Q Consensus 501 ~al~~ 505 (713)
+.-+.
T Consensus 192 rLre~ 196 (432)
T KOG2758|consen 192 RLREY 196 (432)
T ss_pred HHHHH
Confidence 76544
No 499
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.53 E-value=9.1e+02 Score=24.92 Aligned_cols=57 Identities=19% Similarity=0.158 Sum_probs=38.2
Q ss_pred ccCchHHHHHHHHHHHHHHHHhcCCCCCCCCCcccchHHHHHHHHHHhHHHHHhcCChhHHHHHHHHHhcc
Q 035707 163 GLGRFEEACQSCKVILDTVEHALPEGLPGNHSIDCKLQETLNKAVELLPELYKLAGDPDETILSYRRALLY 233 (713)
Q Consensus 163 ~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~~~~al~~ 233 (713)
..|+++.|+.+|+.--....+.. + ...++-.+++.++ +++.+++.+|+.++++-+..
T Consensus 164 l~~~l~~~Lswc~ehk~~LkK~~--------S-~lEf~lRlQefIE-----Li~~~~~~~Ai~~akk~f~~ 220 (389)
T KOG0396|consen 164 LAGELEPALSWCKEHKVELKKEE--------S-SLEFQLRLQEFIE-----LIKVDNYDKAIAFAKKHFAP 220 (389)
T ss_pred HhcchHHHHHHHHHHHHHHHhcc--------c-hhhhHHHHHHHHH-----HHHhccHHHHHHHHHHHHhh
Confidence 45789999999996443332210 0 0144455666666 66889999999999998764
No 500
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.40 E-value=4.7e+02 Score=27.62 Aligned_cols=29 Identities=17% Similarity=-0.037 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 035707 568 METWHDLANVYTSLSQWRDAEVCLSKSKA 596 (713)
Q Consensus 568 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 596 (713)
...+..-|.+.+.+|+-++|.++++.+..
T Consensus 267 lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 267 LRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45566678899999999999999998754
Done!