Query 035707
Match_columns 713
No_of_seqs 1104 out of 4632
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 09:02:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035707.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035707hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 1.7E-38 5.9E-43 336.7 43.9 383 158-687 6-388 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 1.1E-38 3.9E-43 338.1 41.8 345 299-709 30-374 (388)
3 2xpi_A Anaphase-promoting comp 100.0 8.7E-39 3E-43 359.3 36.6 490 58-683 90-595 (597)
4 2xpi_A Anaphase-promoting comp 100.0 8.2E-38 2.8E-42 351.4 38.7 464 152-709 85-585 (597)
5 2gw1_A Mitochondrial precursor 100.0 9.4E-34 3.2E-38 311.8 33.3 409 204-709 6-484 (514)
6 2gw1_A Mitochondrial precursor 100.0 9.9E-33 3.4E-37 303.7 36.2 435 151-680 6-491 (514)
7 3fp2_A TPR repeat-containing p 100.0 1.7E-32 5.8E-37 303.7 38.0 417 203-708 24-496 (537)
8 2y4t_A DNAJ homolog subfamily 100.0 1.9E-32 6.5E-37 296.2 36.3 360 295-708 19-415 (450)
9 3ieg_A DNAJ homolog subfamily 100.0 1.1E-31 3.9E-36 280.2 37.5 309 354-709 2-341 (359)
10 3ieg_A DNAJ homolog subfamily 100.0 6.5E-31 2.2E-35 274.5 40.6 335 301-687 2-355 (359)
11 3fp2_A TPR repeat-containing p 100.0 1.6E-31 5.4E-36 295.9 38.0 450 83-640 24-500 (537)
12 2y4t_A DNAJ homolog subfamily 100.0 3.1E-31 1E-35 286.7 37.2 314 350-709 21-364 (450)
13 4g1t_A Interferon-induced prot 100.0 6.7E-31 2.3E-35 286.0 33.9 416 163-711 23-467 (472)
14 4g1t_A Interferon-induced prot 100.0 6.1E-30 2.1E-34 278.4 35.3 396 152-680 52-472 (472)
15 3hym_B Cell division cycle pro 100.0 8.7E-30 3E-34 262.8 31.9 292 351-687 18-320 (330)
16 3hym_B Cell division cycle pro 100.0 2.1E-29 7.2E-34 259.9 31.7 283 381-709 13-305 (330)
17 1fch_A Peroxisomal targeting s 100.0 5E-30 1.7E-34 269.2 24.0 299 364-704 34-360 (368)
18 4eqf_A PEX5-related protein; a 100.0 1.6E-28 5.3E-33 257.7 24.1 278 387-703 57-356 (365)
19 1fch_A Peroxisomal targeting s 100.0 1.3E-27 4.6E-32 250.6 28.2 297 311-667 34-359 (368)
20 3cv0_A Peroxisome targeting si 100.0 9.6E-28 3.3E-32 247.0 23.9 278 389-707 15-319 (327)
21 2xm6_A Protein corresponding t 100.0 4.8E-25 1.6E-29 240.8 45.6 317 302-700 111-468 (490)
22 4eqf_A PEX5-related protein; a 100.0 4.8E-27 1.6E-31 246.3 24.8 271 353-666 63-355 (365)
23 2xm6_A Protein corresponding t 100.0 2.1E-24 7E-29 235.8 45.7 321 302-706 75-435 (490)
24 2h6f_A Protein farnesyltransfe 100.0 3.4E-27 1.1E-31 246.1 21.8 245 432-707 89-352 (382)
25 2h6f_A Protein farnesyltransfe 100.0 8.2E-27 2.8E-31 243.1 24.6 258 386-685 92-366 (382)
26 3cv0_A Peroxisome targeting si 99.9 2E-26 6.8E-31 237.2 23.6 271 354-669 20-317 (327)
27 3u4t_A TPR repeat-containing p 99.9 4.1E-25 1.4E-29 221.1 26.7 243 440-709 2-256 (272)
28 3uq3_A Heat shock protein STI1 99.9 2.5E-24 8.4E-29 213.3 28.4 239 395-681 5-256 (258)
29 2pl2_A Hypothetical conserved 99.9 6.9E-25 2.4E-29 211.4 22.4 201 472-702 2-213 (217)
30 3sf4_A G-protein-signaling mod 99.9 9E-25 3.1E-29 232.1 24.1 303 353-687 7-362 (406)
31 2pl2_A Hypothetical conserved 99.9 1.2E-24 4.1E-29 209.7 22.7 200 438-665 2-212 (217)
32 3mkr_A Coatomer subunit epsilo 99.9 1.8E-24 6.2E-29 218.1 24.3 257 417-709 10-270 (291)
33 3mkr_A Coatomer subunit epsilo 99.9 7E-24 2.4E-28 213.8 27.8 279 362-697 6-288 (291)
34 3uq3_A Heat shock protein STI1 99.9 4.2E-24 1.4E-28 211.6 24.0 229 440-704 4-237 (258)
35 2ooe_A Cleavage stimulation fa 99.9 1.5E-22 5.2E-27 223.3 39.0 393 276-708 25-497 (530)
36 3u4t_A TPR repeat-containing p 99.9 6.8E-24 2.3E-28 212.2 24.8 240 417-684 14-267 (272)
37 2ooe_A Cleavage stimulation fa 99.9 5E-23 1.7E-27 227.1 33.4 350 293-709 4-460 (530)
38 3sf4_A G-protein-signaling mod 99.9 5.7E-24 2E-28 225.9 24.0 280 395-707 9-340 (406)
39 4a1s_A PINS, partner of inscut 99.9 5.2E-24 1.8E-28 227.0 23.3 278 395-705 48-374 (411)
40 3ro2_A PINS homolog, G-protein 99.9 2.4E-23 8.2E-28 214.5 24.2 279 396-707 6-336 (338)
41 4a1s_A PINS, partner of inscut 99.9 4E-23 1.4E-27 220.1 22.6 285 353-670 46-375 (411)
42 3ro2_A PINS homolog, G-protein 99.9 1.1E-22 3.8E-27 209.5 24.7 285 355-671 5-336 (338)
43 2q7f_A YRRB protein; TPR, prot 99.9 1.2E-22 4.1E-27 199.2 22.8 221 440-687 22-242 (243)
44 2q7f_A YRRB protein; TPR, prot 99.9 1.9E-22 6.5E-27 197.8 22.0 224 390-650 18-241 (243)
45 3e4b_A ALGK; tetratricopeptide 99.9 3.1E-22 1.1E-26 215.2 25.6 384 208-703 7-421 (452)
46 1ouv_A Conserved hypothetical 99.9 1.7E-21 6E-26 195.0 27.9 231 437-708 2-256 (273)
47 3vtx_A MAMA; tetratricopeptide 99.9 4.7E-22 1.6E-26 186.2 21.1 173 510-708 3-175 (184)
48 1xnf_A Lipoprotein NLPI; TPR, 99.9 3.7E-22 1.3E-26 199.7 21.7 246 417-697 16-269 (275)
49 1ouv_A Conserved hypothetical 99.9 1.1E-20 3.8E-25 189.1 31.5 233 388-675 3-259 (273)
50 2vq2_A PILW, putative fimbrial 99.9 4E-21 1.4E-25 185.7 26.6 218 436-678 3-222 (225)
51 2ho1_A Type 4 fimbrial biogene 99.9 1.9E-21 6.5E-26 192.0 24.8 218 435-677 30-248 (252)
52 3vtx_A MAMA; tetratricopeptide 99.9 2.3E-21 7.9E-26 181.4 22.5 172 439-635 3-174 (184)
53 1xnf_A Lipoprotein NLPI; TPR, 99.9 4.3E-22 1.5E-26 199.2 18.0 253 363-661 13-269 (275)
54 3ulq_A Response regulator aspa 99.9 2.9E-21 9.8E-26 203.7 24.9 316 354-706 11-371 (383)
55 2vq2_A PILW, putative fimbrial 99.9 5.9E-21 2E-25 184.5 24.9 210 471-709 4-217 (225)
56 2ho1_A Type 4 fimbrial biogene 99.9 1.8E-20 6E-25 185.0 28.6 211 395-642 37-249 (252)
57 4abn_A Tetratricopeptide repea 99.9 1.4E-21 4.8E-26 211.5 20.2 217 418-663 80-317 (474)
58 3e4b_A ALGK; tetratricopeptide 99.9 1.9E-21 6.6E-26 209.0 20.8 339 306-703 7-387 (452)
59 4abn_A Tetratricopeptide repea 99.9 1.4E-21 4.7E-26 211.6 19.5 215 455-699 82-317 (474)
60 2ond_A Cleavage stimulation fa 99.9 1.5E-20 5E-25 191.8 25.9 223 458-709 33-276 (308)
61 2ond_A Cleavage stimulation fa 99.9 3.7E-20 1.3E-24 188.7 28.0 258 374-680 34-305 (308)
62 1xi4_A Clathrin heavy chain; a 99.9 8.4E-19 2.9E-23 199.3 39.8 342 210-686 1055-1415(1630)
63 3nf1_A KLC 1, kinesin light ch 99.9 3.2E-21 1.1E-25 196.6 17.6 251 437-706 23-310 (311)
64 4i17_A Hypothetical protein; T 99.9 9.2E-20 3.2E-24 177.0 26.4 219 438-683 4-225 (228)
65 4gyw_A UDP-N-acetylglucosamine 99.8 1.4E-20 4.6E-25 211.4 19.8 171 510-706 7-177 (723)
66 1xi4_A Clathrin heavy chain; a 99.8 5.5E-18 1.9E-22 192.7 39.1 377 210-696 991-1377(1630)
67 4i17_A Hypothetical protein; T 99.8 5.5E-19 1.9E-23 171.5 25.6 210 396-647 8-225 (228)
68 3q15_A PSP28, response regulat 99.8 3.4E-19 1.2E-23 187.4 25.7 240 443-704 103-366 (378)
69 3ulq_A Response regulator aspa 99.8 1.9E-19 6.6E-24 189.7 23.1 243 396-669 104-370 (383)
70 4gyw_A UDP-N-acetylglucosamine 99.8 6.7E-20 2.3E-24 205.8 20.3 165 477-667 10-174 (723)
71 3nf1_A KLC 1, kinesin light ch 99.8 9.5E-20 3.3E-24 185.6 16.5 264 350-634 22-310 (311)
72 3dra_A Protein farnesyltransfe 99.8 2.6E-18 8.9E-23 171.7 25.4 223 456-706 48-291 (306)
73 3qky_A Outer membrane assembly 99.8 7.6E-19 2.6E-23 174.4 21.2 199 470-694 10-252 (261)
74 1hz4_A MALT regulatory protein 99.8 7.7E-18 2.6E-22 176.7 29.6 280 356-669 15-324 (373)
75 1hz4_A MALT regulatory protein 99.8 7.9E-18 2.7E-22 176.6 29.3 281 393-706 12-325 (373)
76 3qky_A Outer membrane assembly 99.8 1.6E-18 5.6E-23 172.0 21.9 212 435-652 9-248 (261)
77 3urz_A Uncharacterized protein 99.8 8.5E-19 2.9E-23 167.4 18.2 187 512-707 4-190 (208)
78 1qqe_A Vesicular transport pro 99.8 1.4E-18 4.8E-23 175.5 20.1 243 424-707 3-273 (292)
79 3dra_A Protein farnesyltransfe 99.8 1.1E-17 3.9E-22 167.0 25.4 231 423-681 50-302 (306)
80 2pzi_A Probable serine/threoni 99.8 1.4E-18 4.6E-23 196.5 20.4 188 435-651 388-583 (681)
81 4ga2_A E3 SUMO-protein ligase 99.8 4.9E-19 1.7E-23 159.2 12.9 147 517-687 2-149 (150)
82 3q15_A PSP28, response regulat 99.8 1.8E-17 6.1E-22 174.2 26.9 260 377-668 83-366 (378)
83 2pzi_A Probable serine/threoni 99.8 7.4E-19 2.5E-23 198.6 16.0 200 469-701 388-596 (681)
84 1qqe_A Vesicular transport pro 99.8 9.5E-18 3.3E-22 169.3 22.3 229 421-682 32-284 (292)
85 3as5_A MAMA; tetratricopeptide 99.8 5.7E-18 1.9E-22 157.8 18.9 173 511-709 7-179 (186)
86 3edt_B KLC 2, kinesin light ch 99.8 2.5E-18 8.6E-23 172.1 17.3 235 453-704 13-282 (283)
87 3as5_A MAMA; tetratricopeptide 99.8 4.4E-17 1.5E-21 151.7 19.9 169 442-635 9-177 (186)
88 3urz_A Uncharacterized protein 99.8 2.6E-17 8.7E-22 157.1 18.6 195 440-681 3-199 (208)
89 4ga2_A E3 SUMO-protein ligase 99.8 2.9E-18 9.8E-23 154.2 11.0 147 481-651 2-149 (150)
90 2yhc_A BAMD, UPF0169 lipoprote 99.8 7.2E-17 2.5E-21 156.1 21.7 192 477-709 5-219 (225)
91 1b89_A Protein (clathrin heavy 99.7 1E-18 3.5E-23 179.5 8.0 319 276-701 16-353 (449)
92 3edt_B KLC 2, kinesin light ch 99.7 2.2E-17 7.4E-22 165.3 16.4 232 419-668 14-282 (283)
93 1b89_A Protein (clathrin heavy 99.7 3E-18 1E-22 176.1 10.1 290 312-699 13-307 (449)
94 3dss_A Geranylgeranyl transfer 99.7 6.2E-16 2.1E-20 155.1 25.4 227 453-706 41-307 (331)
95 3dss_A Geranylgeranyl transfer 99.7 1.1E-14 3.8E-19 146.0 31.2 205 365-601 39-271 (331)
96 3q7a_A Farnesyltransferase alp 99.7 6.2E-16 2.1E-20 155.6 21.3 227 452-705 65-334 (349)
97 4gco_A Protein STI-1; structur 99.7 1.9E-16 6.5E-21 137.3 15.2 118 563-682 8-125 (126)
98 2yhc_A BAMD, UPF0169 lipoprote 99.7 1E-15 3.5E-20 147.9 21.9 189 395-636 4-218 (225)
99 2r5s_A Uncharacterized protein 99.7 9.2E-17 3.1E-21 148.8 13.9 163 513-702 7-172 (176)
100 3gyz_A Chaperone protein IPGC; 99.7 1.3E-17 4.5E-22 149.0 6.9 116 589-708 23-138 (151)
101 4e6h_A MRNA 3'-END-processing 99.7 1.6E-13 5.5E-18 152.1 39.9 245 458-709 326-576 (679)
102 3qou_A Protein YBBN; thioredox 99.7 1.1E-15 3.8E-20 153.6 20.1 171 435-630 111-283 (287)
103 3qou_A Protein YBBN; thioredox 99.7 7.6E-16 2.6E-20 154.7 18.6 167 510-702 115-283 (287)
104 2ifu_A Gamma-SNAP; membrane fu 99.7 3.4E-16 1.2E-20 159.2 16.0 230 417-695 2-253 (307)
105 2r5s_A Uncharacterized protein 99.7 4.3E-16 1.5E-20 144.2 15.1 68 439-507 4-71 (176)
106 2ifu_A Gamma-SNAP; membrane fu 99.7 8.5E-16 2.9E-20 156.2 18.6 184 420-636 30-228 (307)
107 4gco_A Protein STI-1; structur 99.7 7.5E-16 2.6E-20 133.5 14.8 120 503-646 6-125 (126)
108 3q7a_A Farnesyltransferase alp 99.7 8.5E-15 2.9E-19 147.4 23.5 232 422-681 70-346 (349)
109 4f3v_A ESX-1 secretion system 99.6 5.8E-16 2E-20 150.7 12.2 211 444-682 10-251 (282)
110 2vsy_A XCC0866; transferase, g 99.6 2.1E-15 7.3E-20 167.4 18.3 158 525-708 2-162 (568)
111 3gyz_A Chaperone protein IPGC; 99.6 5.3E-16 1.8E-20 138.5 9.9 110 561-672 29-138 (151)
112 2vsy_A XCC0866; transferase, g 99.6 4.1E-15 1.4E-19 165.2 18.5 165 419-609 2-169 (568)
113 2vgx_A Chaperone SYCD; alterna 99.6 7.4E-16 2.5E-20 137.8 9.8 115 590-708 9-123 (148)
114 4f3v_A ESX-1 secretion system 99.6 2.2E-15 7.6E-20 146.6 13.4 204 418-647 18-252 (282)
115 1p5q_A FKBP52, FK506-binding p 99.6 2E-16 6.9E-21 162.7 4.9 185 489-703 78-294 (336)
116 3rjv_A Putative SEL1 repeat pr 99.6 1.1E-14 3.9E-19 139.0 16.4 187 459-680 4-208 (212)
117 2fo7_A Synthetic consensus TPR 99.6 1.9E-14 6.5E-19 125.8 16.6 135 569-707 2-136 (136)
118 3rjv_A Putative SEL1 repeat pr 99.6 3.9E-14 1.3E-18 135.3 19.5 187 423-643 3-207 (212)
119 2c2l_A CHIP, carboxy terminus 99.6 5.7E-15 1.9E-19 147.8 12.8 105 438-545 1-105 (281)
120 2c2l_A CHIP, carboxy terminus 99.6 1.3E-14 4.3E-19 145.2 14.6 201 472-706 1-202 (281)
121 2vgx_A Chaperone SYCD; alterna 99.6 5.1E-15 1.7E-19 132.3 10.0 112 565-678 18-129 (148)
122 2xcb_A PCRH, regulatory protei 99.6 5.7E-15 2E-19 131.2 10.2 114 563-678 13-126 (142)
123 4e6h_A MRNA 3'-END-processing 99.6 6.4E-12 2.2E-16 139.4 36.1 364 278-673 81-576 (679)
124 1dce_A Protein (RAB geranylger 99.6 8.5E-15 2.9E-19 160.4 12.2 191 491-707 44-271 (567)
125 1p5q_A FKBP52, FK506-binding p 99.6 5.7E-16 1.9E-20 159.3 2.4 199 419-666 78-293 (336)
126 1a17_A Serine/threonine protei 99.5 1.4E-13 4.9E-18 125.3 17.0 135 567-705 12-148 (166)
127 3upv_A Heat shock protein STI1 99.5 9.2E-14 3.2E-18 120.4 14.8 117 566-684 2-124 (126)
128 1hh8_A P67PHOX, NCF-2, neutrop 99.5 1.2E-13 4.2E-18 131.8 16.9 133 568-707 6-154 (213)
129 2xcb_A PCRH, regulatory protei 99.5 2.1E-14 7.1E-19 127.5 10.5 117 589-709 5-121 (142)
130 2e2e_A Formate-dependent nitri 99.5 4.5E-14 1.5E-18 130.6 13.1 128 578-709 20-150 (177)
131 2fo7_A Synthetic consensus TPR 99.5 4E-13 1.4E-17 117.2 18.2 132 478-633 3-134 (136)
132 2lni_A Stress-induced-phosphop 99.5 2.2E-13 7.6E-18 118.8 14.9 125 561-687 9-133 (133)
133 2fbn_A 70 kDa peptidylprolyl i 99.5 5.8E-14 2E-18 132.5 11.6 130 568-701 38-184 (198)
134 1dce_A Protein (RAB geranylger 99.5 3.5E-14 1.2E-18 155.5 11.5 186 458-670 46-270 (567)
135 3sz7_A HSC70 cochaperone (SGT) 99.5 1.9E-13 6.6E-18 124.5 14.7 121 562-684 5-125 (164)
136 2vyi_A SGTA protein; chaperone 99.5 3.5E-13 1.2E-17 117.0 15.1 122 564-687 8-129 (131)
137 1hh8_A P67PHOX, NCF-2, neutrop 99.5 4.7E-13 1.6E-17 127.8 16.0 131 478-635 8-154 (213)
138 2qfc_A PLCR protein; TPR, HTH, 99.5 6.8E-13 2.3E-17 133.7 17.4 173 512-704 75-267 (293)
139 2hr2_A Hypothetical protein; a 99.5 2.1E-13 7.1E-18 119.9 10.9 117 568-710 11-138 (159)
140 3upv_A Heat shock protein STI1 99.5 9.2E-13 3.1E-17 114.0 15.0 117 510-648 2-124 (126)
141 2qfc_A PLCR protein; TPR, HTH, 99.5 2.5E-12 8.4E-17 129.6 20.0 179 438-631 72-266 (293)
142 3u3w_A Transcriptional activat 99.5 4.3E-12 1.5E-16 127.8 21.4 172 444-631 78-266 (293)
143 1hxi_A PEX5, peroxisome target 99.5 4.2E-13 1.4E-17 115.1 11.9 101 604-708 19-119 (121)
144 2e2e_A Formate-dependent nitri 99.5 3.2E-13 1.1E-17 124.8 11.9 131 523-677 21-154 (177)
145 3mv2_B Coatomer subunit epsilo 99.4 8.6E-12 2.9E-16 122.9 22.3 257 363-676 21-291 (310)
146 2fbn_A 70 kDa peptidylprolyl i 99.4 9.9E-14 3.4E-18 130.9 8.1 165 481-653 9-173 (198)
147 3sz7_A HSC70 cochaperone (SGT) 99.4 6E-13 2E-17 121.3 12.9 108 598-709 7-114 (164)
148 1na0_A Designed protein CTPR3; 99.4 2.9E-12 9.9E-17 110.0 16.6 118 567-686 8-125 (125)
149 4gcn_A Protein STI-1; structur 99.4 9.4E-13 3.2E-17 114.1 13.2 110 566-678 6-122 (127)
150 3mv2_B Coatomer subunit epsilo 99.4 1.6E-11 5.6E-16 121.0 23.1 198 374-605 84-290 (310)
151 2vyi_A SGTA protein; chaperone 99.4 3.6E-12 1.2E-16 110.5 16.4 121 510-652 10-130 (131)
152 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 1.7E-13 5.7E-18 147.1 9.4 146 525-696 247-407 (457)
153 4gcn_A Protein STI-1; structur 99.4 3.9E-13 1.3E-17 116.5 9.9 102 601-706 7-115 (127)
154 1a17_A Serine/threonine protei 99.4 6.1E-12 2.1E-16 114.4 18.3 135 395-544 13-149 (166)
155 1elw_A TPR1-domain of HOP; HOP 99.4 3E-12 1E-16 108.7 15.2 115 567-683 3-117 (118)
156 1hxi_A PEX5, peroxisome target 99.4 8E-13 2.7E-17 113.4 11.5 104 568-673 17-120 (121)
157 3u3w_A Transcriptional activat 99.4 1.3E-12 4.4E-17 131.7 14.4 172 514-705 77-268 (293)
158 3q49_B STIP1 homology and U bo 99.4 1.3E-12 4.5E-17 114.8 12.7 121 565-687 6-131 (137)
159 2lni_A Stress-induced-phosphop 99.4 2.4E-12 8.3E-17 112.1 14.0 120 510-651 14-133 (133)
160 3rkv_A Putative peptidylprolyl 99.4 1.2E-12 4.1E-17 119.0 11.6 121 565-687 8-147 (162)
161 3q49_B STIP1 homology and U bo 99.4 2.9E-12 9.8E-17 112.6 13.2 109 596-708 3-111 (137)
162 2hr2_A Hypothetical protein; a 99.4 9.5E-13 3.3E-17 115.7 9.9 74 601-676 56-140 (159)
163 1wao_1 Serine/threonine protei 99.4 1.4E-13 5E-18 148.2 5.7 140 567-710 5-157 (477)
164 2kck_A TPR repeat; tetratricop 99.4 2E-12 6.7E-17 108.8 11.5 107 598-708 2-111 (112)
165 1na0_A Designed protein CTPR3; 99.4 2.1E-11 7.1E-16 104.6 17.2 118 511-650 8-125 (125)
166 2dba_A Smooth muscle cell asso 99.4 7.3E-12 2.5E-16 111.4 14.3 120 563-684 23-145 (148)
167 2if4_A ATFKBP42; FKBP-like, al 99.4 4.9E-13 1.7E-17 137.4 7.4 139 567-709 178-334 (338)
168 3gw4_A Uncharacterized protein 99.4 2.2E-11 7.5E-16 114.9 18.0 164 417-598 3-177 (203)
169 3rkv_A Putative peptidylprolyl 99.4 1.6E-11 5.3E-16 111.5 15.7 137 511-651 10-147 (162)
170 1elw_A TPR1-domain of HOP; HOP 99.4 2.3E-11 7.7E-16 103.2 15.8 114 511-646 3-116 (118)
171 3gw4_A Uncharacterized protein 99.3 1.5E-11 5.1E-16 116.1 16.1 166 451-632 2-177 (203)
172 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 1.2E-12 4.3E-17 140.3 8.6 160 418-622 246-405 (457)
173 2xev_A YBGF; tetratricopeptide 99.3 1.7E-11 5.7E-16 106.3 14.1 117 569-687 3-125 (129)
174 1elr_A TPR2A-domain of HOP; HO 99.3 1.2E-11 4.2E-16 107.1 12.6 118 567-687 3-127 (131)
175 1zu2_A Mitochondrial import re 99.3 3.1E-12 1.1E-16 112.2 8.5 90 580-671 14-124 (158)
176 2uy1_A Cleavage stimulation fa 99.3 1.7E-08 5.8E-13 108.7 38.4 343 316-702 28-412 (493)
177 4b4t_Q 26S proteasome regulato 99.3 1.9E-10 6.6E-15 122.6 22.4 198 417-631 15-245 (434)
178 1ihg_A Cyclophilin 40; ppiase 99.3 2.9E-11 1E-15 125.4 15.3 125 568-696 223-363 (370)
179 2xev_A YBGF; tetratricopeptide 99.3 1.1E-10 3.8E-15 101.0 16.3 119 514-651 4-125 (129)
180 2kck_A TPR repeat; tetratricop 99.3 1.3E-11 4.6E-16 103.6 10.0 106 565-672 3-111 (112)
181 4b4t_Q 26S proteasome regulato 99.3 6.6E-11 2.2E-15 126.3 17.7 209 441-667 4-245 (434)
182 2dba_A Smooth muscle cell asso 99.3 3.1E-11 1.1E-15 107.2 12.7 110 596-709 22-134 (148)
183 1wao_1 Serine/threonine protei 99.3 9.4E-13 3.2E-17 141.8 2.8 134 514-671 8-154 (477)
184 2if4_A ATFKBP42; FKBP-like, al 99.3 8.1E-12 2.8E-16 128.3 9.3 160 470-673 174-334 (338)
185 1zu2_A Mitochondrial import re 99.3 1E-11 3.6E-16 108.8 8.5 94 613-708 13-125 (158)
186 3ro3_A PINS homolog, G-protein 99.3 2E-11 6.7E-16 110.2 10.7 139 565-707 6-162 (164)
187 3k9i_A BH0479 protein; putativ 99.2 7.1E-12 2.4E-16 106.8 6.7 103 580-684 2-107 (117)
188 3k9i_A BH0479 protein; putativ 99.2 3E-11 1E-15 102.9 10.2 106 524-651 2-110 (117)
189 1ihg_A Cyclophilin 40; ppiase 99.2 1.5E-10 5.2E-15 120.0 16.3 89 565-653 270-358 (370)
190 3ro3_A PINS homolog, G-protein 99.2 1.7E-10 5.8E-15 103.9 14.8 140 442-597 10-158 (164)
191 1elr_A TPR2A-domain of HOP; HO 99.2 1.2E-10 4.2E-15 100.7 13.2 118 477-612 5-122 (131)
192 2uy1_A Cleavage stimulation fa 99.1 4.2E-08 1.4E-12 105.6 31.2 285 368-700 27-380 (493)
193 1na3_A Designed protein CTPR2; 99.1 1.8E-09 6.2E-14 86.6 12.6 86 565-650 6-91 (91)
194 2l6j_A TPR repeat-containing p 99.1 2.5E-10 8.5E-15 95.7 7.6 93 568-662 4-102 (111)
195 2l6j_A TPR repeat-containing p 99.0 1.5E-10 5.1E-15 97.1 4.6 95 601-699 3-103 (111)
196 2kat_A Uncharacterized protein 99.0 2.2E-09 7.5E-14 90.8 11.5 100 586-687 3-104 (115)
197 1na3_A Designed protein CTPR2; 99.0 2.1E-09 7.3E-14 86.2 10.5 85 600-686 7-91 (91)
198 2kat_A Uncharacterized protein 99.0 2.4E-09 8.3E-14 90.5 10.8 83 424-508 3-85 (115)
199 2kc7_A BFR218_protein; tetratr 99.0 1.3E-09 4.6E-14 89.2 7.6 93 606-710 4-97 (99)
200 3ma5_A Tetratricopeptide repea 98.9 7.1E-09 2.4E-13 85.1 9.5 85 436-521 2-86 (100)
201 3n71_A Histone lysine methyltr 98.8 1.3E-08 4.5E-13 108.6 12.5 134 518-667 315-464 (490)
202 3ma5_A Tetratricopeptide repea 98.8 6.2E-09 2.1E-13 85.4 6.8 89 597-687 2-92 (100)
203 2kc7_A BFR218_protein; tetratr 98.8 4.7E-09 1.6E-13 85.9 5.8 91 572-672 4-95 (99)
204 3n71_A Histone lysine methyltr 98.8 3E-08 1E-12 105.7 13.6 135 483-631 316-464 (490)
205 3u64_A Protein TP_0956; tetrat 98.7 1.8E-07 6.1E-12 89.6 15.3 85 584-670 179-272 (301)
206 1klx_A Cysteine rich protein B 98.7 1E-07 3.4E-12 83.3 12.6 111 582-704 9-127 (138)
207 1klx_A Cysteine rich protein B 98.7 2E-07 6.8E-12 81.4 13.5 60 569-630 58-125 (138)
208 3u64_A Protein TP_0956; tetrat 98.6 9.6E-07 3.3E-11 84.6 17.2 125 378-508 139-272 (301)
209 3ly7_A Transcriptional activat 98.6 1E-06 3.5E-11 88.3 17.4 152 435-636 188-344 (372)
210 3ly7_A Transcriptional activat 98.6 2.7E-07 9.4E-12 92.4 13.0 134 570-708 198-344 (372)
211 3bee_A Putative YFRE protein; 98.6 2.7E-07 9.4E-12 73.8 10.3 75 632-708 2-77 (93)
212 4g26_A Pentatricopeptide repea 98.6 5.1E-06 1.7E-10 89.3 23.0 181 443-646 28-220 (501)
213 4g26_A Pentatricopeptide repea 98.5 6.3E-06 2.1E-10 88.6 21.4 175 358-541 29-204 (501)
214 3qww_A SET and MYND domain-con 98.4 1.6E-06 5.3E-11 91.0 13.2 102 524-639 310-424 (433)
215 3bee_A Putative YFRE protein; 98.4 2.3E-06 7.7E-11 68.4 9.9 70 565-634 3-75 (93)
216 1pc2_A Mitochondria fission pr 98.3 2.7E-06 9.3E-11 73.5 10.5 96 584-681 14-114 (152)
217 1pc2_A Mitochondria fission pr 98.3 1.2E-06 4E-11 75.8 7.9 90 617-708 13-105 (152)
218 3qwp_A SET and MYND domain-con 98.3 1.9E-06 6.5E-11 90.5 9.9 113 522-648 297-425 (429)
219 3qww_A SET and MYND domain-con 98.3 6.3E-06 2.2E-10 86.4 13.4 104 488-605 310-424 (433)
220 2v5f_A Prolyl 4-hydroxylase su 98.3 6.9E-06 2.4E-10 67.4 10.8 76 568-643 5-87 (104)
221 3qwp_A SET and MYND domain-con 98.2 1E-05 3.5E-10 84.9 13.9 114 485-612 296-423 (429)
222 2v5f_A Prolyl 4-hydroxylase su 98.2 2E-05 7E-10 64.6 12.7 85 511-610 4-88 (104)
223 1nzn_A CGI-135 protein, fissio 97.6 0.00041 1.4E-08 57.6 10.1 96 584-681 17-117 (126)
224 4h7y_A Dual specificity protei 97.5 0.0013 4.3E-08 55.8 12.3 127 510-652 11-143 (161)
225 1nzn_A CGI-135 protein, fissio 97.5 0.0011 3.7E-08 55.1 11.4 94 419-515 14-111 (126)
226 4h7y_A Dual specificity protei 97.5 0.0012 4E-08 56.0 11.0 107 564-673 9-129 (161)
227 3ffl_A Anaphase-promoting comp 97.2 0.0038 1.3E-07 54.2 12.1 28 511-538 121-148 (167)
228 3ffl_A Anaphase-promoting comp 97.2 0.0036 1.2E-07 54.4 11.5 47 565-612 119-165 (167)
229 3o48_A Mitochondria fission 1 96.8 0.0041 1.4E-07 51.7 8.0 80 601-682 39-122 (134)
230 1y8m_A FIS1; mitochondria, unk 96.6 0.053 1.8E-06 45.7 13.1 71 438-508 36-109 (144)
231 1y8m_A FIS1; mitochondria, unk 96.5 0.018 6.2E-07 48.5 10.1 80 599-680 36-119 (144)
232 3o48_A Mitochondria fission 1 96.5 0.025 8.5E-07 47.0 10.5 79 567-645 39-121 (134)
233 3txn_A 26S proteasome regulato 96.3 0.16 5.3E-06 51.8 17.4 173 442-631 20-210 (394)
234 3txn_A 26S proteasome regulato 96.2 1.2 4E-05 45.3 23.6 175 356-542 20-211 (394)
235 3kae_A CDC27, possible protein 96.1 0.57 2E-05 40.3 16.9 95 396-507 34-145 (242)
236 4gns_B Protein CSD3, chitin bi 95.5 0.11 3.9E-06 57.5 13.6 61 568-628 337-397 (754)
237 1qsa_A Protein (soluble lytic 95.3 1.9 6.6E-05 46.8 21.9 244 437-702 98-347 (618)
238 4gns_B Protein CSD3, chitin bi 95.3 0.11 3.9E-06 57.4 12.4 31 671-703 612-642 (754)
239 3spa_A Mtrpol, DNA-directed RN 95.2 0.19 6.6E-06 56.9 13.8 97 442-541 128-230 (1134)
240 3spa_A Mtrpol, DNA-directed RN 95.1 0.31 1E-05 55.3 15.1 101 566-668 125-231 (1134)
241 4b4t_P 26S proteasome regulato 94.9 4.2 0.00014 42.3 25.0 263 419-703 29-324 (445)
242 3mkq_A Coatomer beta'-subunit; 94.6 0.37 1.3E-05 55.0 15.0 47 450-502 661-707 (814)
243 1zbp_A Hypothetical protein VP 94.4 0.9 3.1E-05 42.9 14.2 121 577-708 6-134 (273)
244 3mkq_B Coatomer subunit alpha; 94.4 1.7 5.9E-05 38.3 15.2 44 453-502 17-60 (177)
245 3mkq_B Coatomer subunit alpha; 94.1 1.2 4E-05 39.4 13.5 82 568-664 34-115 (177)
246 2ff4_A Probable regulatory pro 94.0 0.31 1.1E-05 50.0 11.5 63 568-630 171-233 (388)
247 3mkq_A Coatomer beta'-subunit; 93.8 2.5 8.5E-05 48.0 20.0 106 480-625 633-746 (814)
248 1ya0_A SMG-7 transcript varian 93.8 0.36 1.2E-05 50.9 11.6 82 568-649 152-233 (497)
249 1zbp_A Hypothetical protein VP 93.7 1.2 4.1E-05 42.1 13.6 56 487-544 8-63 (273)
250 4ady_A RPN2, 26S proteasome re 93.7 6.8 0.00023 44.4 21.9 252 356-651 414-680 (963)
251 4ady_A RPN2, 26S proteasome re 93.5 1.6 5.6E-05 49.2 16.5 287 357-687 378-680 (963)
252 4b4t_S RPN3, 26S proteasome re 93.1 3.2 0.00011 43.4 17.0 90 562-653 225-328 (523)
253 4b4t_P 26S proteasome regulato 93.0 9.8 0.00033 39.5 22.3 183 276-470 29-247 (445)
254 1ya0_A SMG-7 transcript varian 92.3 0.48 1.6E-05 50.0 9.7 80 604-685 154-233 (497)
255 2ff4_A Probable regulatory pro 91.9 1.3 4.4E-05 45.4 12.3 112 574-702 121-233 (388)
256 4fhn_B Nucleoporin NUP120; pro 91.1 26 0.00089 41.4 24.1 199 445-667 816-1050(1139)
257 4b4t_R RPN7, 26S proteasome re 90.7 1.3 4.5E-05 45.9 11.1 63 568-630 168-236 (429)
258 4b4t_R RPN7, 26S proteasome re 90.6 1.7 5.8E-05 45.2 11.8 60 443-502 133-194 (429)
259 4b4t_S RPN3, 26S proteasome re 90.0 0.62 2.1E-05 48.7 7.6 128 576-709 144-305 (523)
260 4fhn_B Nucleoporin NUP120; pro 89.8 11 0.00037 44.7 19.2 149 294-458 834-988 (1139)
261 3kae_A CDC27, possible protein 89.2 10 0.00035 32.7 22.3 117 418-544 14-146 (242)
262 1qsa_A Protein (soluble lytic 86.1 41 0.0014 36.4 33.2 201 417-626 225-437 (618)
263 3lvg_A Clathrin heavy chain 1; 80.6 0.0054 1.8E-07 62.8 -12.8 263 263-590 54-326 (624)
264 3lvg_A Clathrin heavy chain 1; 74.1 0.0011 3.6E-08 67.8 -20.0 167 300-531 52-218 (624)
265 3mv2_A Coatomer subunit alpha; 73.1 46 0.0016 32.3 12.5 28 154-181 117-144 (325)
266 3lpz_A GET4 (YOR164C homolog); 69.3 89 0.003 30.6 26.3 99 422-542 118-217 (336)
267 2wpv_A GET4, UPF0363 protein Y 66.4 98 0.0034 30.0 17.8 65 634-702 132-216 (312)
268 4gq2_M Nucleoporin NUP120; bet 61.3 35 0.0012 39.3 10.9 107 293-401 831-942 (950)
269 3mkr_B Coatomer subunit alpha; 59.2 21 0.00072 34.6 7.1 28 154-181 105-132 (320)
270 4gq2_M Nucleoporin NUP120; bet 54.9 1.2E+02 0.0041 34.8 14.0 91 446-541 815-926 (950)
271 1wy6_A Hypothetical protein ST 53.0 61 0.0021 27.0 7.7 51 579-629 102-152 (172)
272 2crb_A Nuclear receptor bindin 48.2 36 0.0012 25.9 5.2 36 150-185 14-49 (97)
273 3lpz_A GET4 (YOR164C homolog); 45.8 2.2E+02 0.0076 27.7 30.4 135 510-650 134-296 (336)
274 2qx5_A Nucleoporin NIC96; mRNA 40.3 3.9E+02 0.013 29.0 18.4 40 426-467 281-320 (661)
275 3ax2_A Mitochondrial import re 39.8 69 0.0024 23.3 5.6 30 572-601 21-50 (73)
276 2wvi_A Mitotic checkpoint seri 37.7 1.6E+02 0.0055 25.3 8.6 47 460-507 79-127 (164)
277 2wpv_A GET4, UPF0363 protein Y 36.7 3E+02 0.01 26.6 27.1 27 353-380 132-158 (312)
278 3ax2_A Mitochondrial import re 35.6 96 0.0033 22.5 5.8 32 606-637 21-52 (73)
279 3esl_A Checkpoint serine/threo 35.2 2.4E+02 0.0083 25.1 14.5 80 462-542 58-145 (202)
280 3t5x_A PCI domain-containing p 35.1 89 0.003 28.1 7.0 35 441-475 14-48 (203)
281 2ijq_A Hypothetical protein; s 35.0 1.9E+02 0.0066 24.7 8.6 63 480-542 36-105 (161)
282 2crb_A Nuclear receptor bindin 32.3 61 0.0021 24.6 4.3 26 675-702 18-43 (97)
283 3t5v_B Nuclear mRNA export pro 32.2 3.7E+02 0.013 27.5 11.9 66 570-635 178-254 (455)
284 3t5v_B Nuclear mRNA export pro 29.7 74 0.0025 32.8 6.1 61 484-544 184-253 (455)
285 3re2_A Predicted protein; meni 29.1 1.6E+02 0.0054 28.9 7.6 64 601-666 254-324 (472)
286 2vkj_A TM1634; membrane protei 28.7 1.6E+02 0.0053 22.2 5.8 50 353-405 51-100 (106)
287 2w2u_A Hypothetical P60 katani 28.3 63 0.0022 24.2 4.0 20 214-233 29-48 (83)
288 2w2u_A Hypothetical P60 katani 27.9 1.3E+02 0.0045 22.4 5.7 32 422-469 16-47 (83)
289 1wy6_A Hypothetical protein ST 27.5 2.7E+02 0.0093 23.2 13.2 117 578-702 17-153 (172)
290 2v6y_A AAA family ATPase, P60 27.3 67 0.0023 24.0 4.0 20 214-233 21-40 (83)
291 2v6y_A AAA family ATPase, P60 26.1 1.3E+02 0.0044 22.4 5.4 18 452-469 22-39 (83)
292 2rpa_A Katanin P60 ATPase-cont 25.6 58 0.002 24.0 3.2 27 444-470 15-41 (78)
293 1om2_A Protein (mitochondrial 25.2 70 0.0024 24.6 3.7 29 676-706 24-52 (95)
294 2ijq_A Hypothetical protein; s 25.1 3.2E+02 0.011 23.3 9.5 61 570-630 34-103 (161)
295 4a5x_A MITD1, MIT domain-conta 24.8 79 0.0027 23.8 4.0 30 198-232 15-44 (86)
296 4gq4_A Menin; tumor suppressor 23.2 2.2E+02 0.0076 28.5 7.6 65 601-667 261-332 (489)
297 3u84_A Menin; MLL, JUND, ledgf 23.0 2.3E+02 0.0077 28.4 7.6 64 601-666 276-346 (550)
298 1om2_A Protein (mitochondrial 23.0 1.2E+02 0.004 23.4 4.6 29 445-473 24-52 (95)
299 3t5x_A PCI domain-containing p 22.8 1.7E+02 0.006 26.1 6.7 35 568-602 14-48 (203)
300 2ynq_A ESSB; membrane protein, 21.0 3.9E+02 0.013 22.7 7.9 91 85-230 9-99 (161)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.7e-38 Score=336.74 Aligned_cols=383 Identities=19% Similarity=0.169 Sum_probs=341.6
Q ss_pred hhhhhccCchHHHHHHHHHHHHHHHHhcCCCCCCCCCcccchHHHHHHHHHHhHHHHHhcCChhHHHHHHHHHhcccCCC
Q 035707 158 TKSLQGLGRFEEACQSCKVILDTVEHALPEGLPGNHSIDCKLQETLNKAVELLPELYKLAGDPDETILSYRRALLYYWNL 237 (713)
Q Consensus 158 ~~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~~~~al~~~~~~ 237 (713)
|..+++.|++++|++.|+.++.. .|++ ..++..++.++...|++++|+..+++++..
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--------~p~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~---- 62 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--------EPDN-----------TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ---- 62 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--------CTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--------CCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Confidence 55666777888887777776653 1221 124556777777778877777777766553
Q ss_pred ChhHHHHHHHHHHHHHhhcCCCCCCCcccccccccccCCchhHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCc
Q 035707 238 DIETTARIEKKFAVFLLYSGTDASPPNLRLQMELSFVPRNNIEEAVLLLLILLKKIVLGKIEWDPSIIDHLSFALSVSGE 317 (713)
Q Consensus 238 ~~~~~~~i~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~eeA~~ll~~~~~~~~l~~~~~~~~~~~~l~~a~~~~g~ 317 (713)
.|.++.++..++.++...|+
T Consensus 63 ------------------------------------------------------------~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 63 ------------------------------------------------------------NPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp ------------------------------------------------------------CTTCHHHHHHHHHHHHHHTC
T ss_pred ------------------------------------------------------------CCCchHHHHHHHHHHHHCCC
Confidence 23466677888999999999
Q ss_pred HHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHH
Q 035707 318 LWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIA 397 (713)
Q Consensus 318 ~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a 397 (713)
++.|...|++++. .+|+++.++..+|.++...|++. +|+..|+++++ ..|.+. .+
T Consensus 83 ~~~A~~~~~~al~-------------------~~p~~~~~~~~l~~~~~~~g~~~-~A~~~~~~al~-~~p~~~----~~ 137 (388)
T 1w3b_A 83 LQEAIEHYRHALR-------------------LKPDFIDGYINLAAALVAAGDME-GAVQAYVSALQ-YNPDLY----CV 137 (388)
T ss_dssp HHHHHHHHHHHHH-------------------HCTTCHHHHHHHHHHHHHHSCSS-HHHHHHHHHHH-HCTTCT----HH
T ss_pred HHHHHHHHHHHHH-------------------cCcchHHHHHHHHHHHHHcCCHH-HHHHHHHHHHH-hCCCcH----HH
Confidence 9999999999865 36889999999999999999999 99999999999 888888 89
Q ss_pred HHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchH
Q 035707 398 NCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVK 477 (713)
Q Consensus 398 ~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 477 (713)
+..+|.++ ...|++++|+..|++++ ..+|+++.++..+|.++...|++++|+..|+++++.+|++. .
T Consensus 138 ~~~l~~~~-----------~~~g~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~ 204 (388)
T 1w3b_A 138 RSDLGNLL-----------KALGRLEEAKACYLKAI-ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFL-D 204 (388)
T ss_dssp HHHHHHHH-----------HTTSCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH-H
T ss_pred HHHHHHHH-----------HHccCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH-H
Confidence 99999999 77888999999999999 99999999999999999999999999999999999999998 9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 035707 478 GYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVK 557 (713)
Q Consensus 478 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 557 (713)
++..+|.++...|++++|+..|++++..+| .+..++..+|.++...|++++|+..|++++...|.+
T Consensus 205 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------------ 270 (388)
T 1w3b_A 205 AYINLGNVLKEARIFDRAVAAYLRALSLSP--NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF------------ 270 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCc--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------------
Confidence 999999999999999999999999999998 788999999999999999999999999999986654
Q ss_pred hcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 035707 558 NRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVP 637 (713)
Q Consensus 558 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~ 637 (713)
+.++..+|.++...|++++|+.+|+++++..|.++.++..+|.++...|++++|+..|+++++.+|++..
T Consensus 271 ----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 340 (388)
T 1w3b_A 271 ----------PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA 340 (388)
T ss_dssp ----------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHH
T ss_pred ----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence 7889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q 035707 638 SLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAG 687 (713)
Q Consensus 638 ~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 687 (713)
++..+|.++...|+++ +|+..|+++++++|+++.+|+++|.++...|+
T Consensus 341 ~~~~l~~~~~~~g~~~--~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 341 AHSNLASVLQQQGKLQ--EALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHTTTCCH--HHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCCHH--HHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999997 99999999999999999999999999988774
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.1e-38 Score=338.09 Aligned_cols=345 Identities=17% Similarity=0.062 Sum_probs=327.0
Q ss_pred CCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHhcCCChHHHHHH
Q 035707 299 EWDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICAENKVCIEEGITY 378 (713)
Q Consensus 299 ~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~~A~~~ 378 (713)
|.++.++..++..+...|+++.+...++.++. .+|.++.++..+|.++...|++. +|+..
T Consensus 30 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~-------------------~~p~~~~~~~~lg~~~~~~g~~~-~A~~~ 89 (388)
T 1w3b_A 30 PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK-------------------QNPLLAEAYSNLGNVYKERGQLQ-EAIEH 89 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------HCTTCHHHHHHHHHHHHHHTCHH-HHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------------------cCCCchHHHHHHHHHHHHCCCHH-HHHHH
Confidence 33555566777888889999999999888765 36899999999999999999999 99999
Q ss_pred HHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 035707 379 ARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLD 458 (713)
Q Consensus 379 ~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~ 458 (713)
|++++. ..|.+. .++..+|.++ ...|++++|+..|++++ ..+|++..++..+|.++...|+++
T Consensus 90 ~~~al~-~~p~~~----~~~~~l~~~~-----------~~~g~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~g~~~ 152 (388)
T 1w3b_A 90 YRHALR-LKPDFI----DGYINLAAAL-----------VAAGDMEGAVQAYVSAL-QYNPDLYCVRSDLGNLLKALGRLE 152 (388)
T ss_dssp HHHHHH-HCTTCH----HHHHHHHHHH-----------HHHSCSSHHHHHHHHHH-HHCTTCTHHHHHHHHHHHTTSCHH
T ss_pred HHHHHH-cCcchH----HHHHHHHHHH-----------HHcCCHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHccCHH
Confidence 999999 889888 8999999999 78888999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 035707 459 VALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNL 538 (713)
Q Consensus 459 ~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 538 (713)
+|+..|++++..+|++. .+|..+|.++...|++++|+..|+++++.+| .+..++..+|.++...|++++|+..|+++
T Consensus 153 ~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 229 (388)
T 1w3b_A 153 EAKACYLKAIETQPNFA-VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP--NFLDAYINLGNVLKEARIFDRAVAAYLRA 229 (388)
T ss_dssp HHHHHHHHHHHHCTTCH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999998 9999999999999999999999999999999 78999999999999999999999999999
Q ss_pred HHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCH
Q 035707 539 LAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQ 618 (713)
Q Consensus 539 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 618 (713)
+...|++ +.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++
T Consensus 230 l~~~p~~----------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 287 (388)
T 1w3b_A 230 LSLSPNH----------------------AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSV 287 (388)
T ss_dssp HHHCTTC----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCH
T ss_pred HhhCcCC----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Confidence 9997655 889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 035707 619 QEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFE 698 (713)
Q Consensus 619 ~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~ 698 (713)
++|+..|+++++..|+++.++..+|.++...|+++ +|+..++++++.+|+++.+++.+|.++...|+ +++|+.+|+
T Consensus 288 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--~~~A~~~~~ 363 (388)
T 1w3b_A 288 AEAEDCYNTALRLCPTHADSLNNLANIKREQGNIE--EAVRLYRKALEVFPEFAAAHSNLASVLQQQGK--LQEALMHYK 363 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH--HHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTC--CHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 99999999999999999999999999999999997 99999999999999999999999999999999 999999999
Q ss_pred HHHccccCCCC
Q 035707 699 AAALLEESAPV 709 (713)
Q Consensus 699 ~a~~l~p~~~~ 709 (713)
++++++|+++.
T Consensus 364 ~a~~~~p~~~~ 374 (388)
T 1w3b_A 364 EAIRISPTFAD 374 (388)
T ss_dssp HHHTTCTTCHH
T ss_pred HHHhhCCCCHH
Confidence 99999998764
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.7e-39 Score=359.31 Aligned_cols=490 Identities=12% Similarity=0.005 Sum_probs=393.2
Q ss_pred cccccCCCCChHHHhhhhhhhcc--CCHHHHHHHhhhHhhhcCCHHHHHhhhhcCCccccchhhhhhhhhhccccccCCC
Q 035707 58 EMDAKVDNSNIEEAESSLRESGY--LNYEEARALLGRLEFQKGNIEAALHVFEGIDVAAVTSRMKVSLSRRCDQNRRRSQ 135 (713)
Q Consensus 58 ~~~~~~~~~~~~~A~~~l~~~l~--~~~~~a~~llg~~~~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (713)
.+..++..|++++|...|++++. ++. .+++.+|.+++..|++++|+++|+++... +
T Consensus 90 ~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~-------------- 147 (597)
T 2xpi_A 90 WRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY-------N-------------- 147 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-------G--------------
T ss_pred HHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-------c--------------
Confidence 45667889999999999999974 444 77889999999999999999999976311 0
Q ss_pred CCCCCCcchhHHHHHHHHHHHhhhhhhccCchHHHHHHHHHHHHHHHHhcCCCCC-------CCCCcccchHHHHHHHHH
Q 035707 136 SDAAPPMSMHAVSLLVEAIFLKTKSLQGLGRFEEACQSCKVILDTVEHALPEGLP-------GNHSIDCKLQETLNKAVE 208 (713)
Q Consensus 136 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~a~~ 208 (713)
.. ..+++.++.+|.+.|++++|.+.|+++ .|...+ .... .-.+....++.
T Consensus 148 --------~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 204 (597)
T 2xpi_A 148 --------RS-----SACRYLAAFCLVKLYDWQGALNLLGET-------NPFRKDEKNANKLLMQD---GGIKLEASMCY 204 (597)
T ss_dssp --------TC-----HHHHHHHHHHHHHTTCHHHHHHHHCSS-------CTTC----------CCC---SSCCHHHHHHH
T ss_pred --------cc-----hhHHHHHHHHHHHHhhHHHHHHHHhcc-------CCccccccccccccccc---cccchhHHHHH
Confidence 00 145778899999999999999887742 111100 0000 00011245778
Q ss_pred HhHHHHHhcCChhHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHhhcCCCCCCCcccccccccccCCchhHHHHHHHHH
Q 035707 209 LLPELYKLAGDPDETILSYRRALLYYWNLDIETTARIEKKFAVFLLYSGTDASPPNLRLQMELSFVPRNNIEEAVLLLLI 288 (713)
Q Consensus 209 ~l~~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~i~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~eeA~~ll~~ 288 (713)
.++.+|.+.|++++|+..|++++..+|+ .... ...++.. +...+..+.+.... +
T Consensus 205 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~---~~~l~~~--------------------~~~~~~~~~~~~~~-l 258 (597)
T 2xpi_A 205 LRGQVYTNLSNFDRAKECYKEALMVDAK--CYEA---FDQLVSN--------------------HLLTADEEWDLVLK-L 258 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHH---HHHHHHT--------------------TCSCHHHHHHHHHH-S
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCch--hhHH---HHHHHHh--------------------hcccchhHHHHHHh-c
Confidence 8999999999999999999999987544 1111 0001100 01111111111000 0
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHhc
Q 035707 289 LLKKIVLGKIEWDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICAEN 368 (713)
Q Consensus 289 ~~~~~~l~~~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~~ 368 (713)
.+.............++..++..|.+.|+++.|.+.|++++.. |.++..+..++..+...
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--------------------~~~~~~~~~l~~~~~~~ 318 (597)
T 2xpi_A 259 NYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--------------------EKSSDLLLCKADTLFVR 318 (597)
T ss_dssp CTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--------------------GGCHHHHHHHHHHHHHT
T ss_pred CCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--------------------CchHHHHHHHHHHHHHh
Confidence 0011111111112334455577788999999999999998752 56788889999999999
Q ss_pred CCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 035707 369 KVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLC 448 (713)
Q Consensus 369 g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la 448 (713)
|+++ +|+.+|+++++ ..|.+. .++..++.++ ...|++++|+..+++++ ...|+++.++..+|
T Consensus 319 g~~~-~A~~~~~~~~~-~~~~~~----~~~~~l~~~~-----------~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~l~ 380 (597)
T 2xpi_A 319 SRFI-DVLAITTKILE-IDPYNL----DVYPLHLASL-----------HESGEKNKLYLISNDLV-DRHPEKAVTWLAVG 380 (597)
T ss_dssp TCHH-HHHHHHHHHHH-HCTTCC----TTHHHHHHHH-----------HHHTCHHHHHHHHHHHH-HHCTTSHHHHHHHH
T ss_pred cCHH-HHHHHHHHHHH-cCcccH----HHHHHHHHHH-----------HHhCCHHHHHHHHHHHH-hhCcccHHHHHHHH
Confidence 9999 99999999998 788887 8899999999 78899999999999999 99999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCH
Q 035707 449 LENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRL 528 (713)
Q Consensus 449 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~ 528 (713)
.+|.+.|++++|+..|+++++.+|.+. .+|..++.++...|++++|+..|+++++..| .+..++..++.++...|++
T Consensus 381 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~ 457 (597)
T 2xpi_A 381 IYYLCVNKISEARRYFSKSSTMDPQFG-PAWIGFAHSFAIEGEHDQAISAYTTAARLFQ--GTHLPYLFLGMQHMQLGNI 457 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT--TCSHHHHHHHHHHHHHTCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--cchHHHHHHHHHHHHcCCH
Confidence 999999999999999999999999988 9999999999999999999999999999988 6788999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCC-
Q 035707 529 KNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAI------NPYS- 601 (713)
Q Consensus 529 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~- 601 (713)
++|++.|+++++..|.+ +.+|..+|.+|...|++++|+.+|+++++. +|.+
T Consensus 458 ~~A~~~~~~~~~~~~~~----------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~ 515 (597)
T 2xpi_A 458 LLANEYLQSSYALFQYD----------------------PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW 515 (597)
T ss_dssp HHHHHHHHHHHHHCCCC----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGG
T ss_pred HHHHHHHHHHHHhCCCC----------------------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhH
Confidence 99999999999986543 788999999999999999999999999988 5654
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 035707 602 ASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLL 681 (713)
Q Consensus 602 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~ 681 (713)
..+|..+|.++...|++++|+..|+++++.+|+++.++..++.+|...|+++ +|+.+|+++++++|+++.++..++.+
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~l~~~p~~~~~~~~l~~~ 593 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPG--LAITHLHESLAISPNEIMASDLLKRA 593 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHCTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHH--HHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 6799999999999999999999999999999999999999999999999997 99999999999999999999999988
Q ss_pred HH
Q 035707 682 YK 683 (713)
Q Consensus 682 ~~ 683 (713)
|.
T Consensus 594 ~~ 595 (597)
T 2xpi_A 594 LE 595 (597)
T ss_dssp TC
T ss_pred Hh
Confidence 74
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.2e-38 Score=351.37 Aligned_cols=464 Identities=13% Similarity=0.025 Sum_probs=389.8
Q ss_pred HHHHHhhhhhhccCchHHHHHHHHHHHHHHHHhcCCCCCCCCCcccchHHHHHHHHHHhHHHHHhcCChhHHHHHHHHHh
Q 035707 152 EAIFLKTKSLQGLGRFEEACQSCKVILDTVEHALPEGLPGNHSIDCKLQETLNKAVELLPELYKLAGDPDETILSYRRAL 231 (713)
Q Consensus 152 e~~~~~~~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~~~~al 231 (713)
..+...+..+.+.|++++|+..|++++... |+ ...+..++.++...|++++|+..|++++
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--------p~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 144 (597)
T 2xpi_A 85 DYLRLWRHDALMQQQYKCAAFVGEKVLDIT--------GN------------PNDAFWLAQVYCCTGDYARAKCLLTKED 144 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------CC------------HHHHHHHHHHHHHTTCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHhhC--------CC------------chHHHHHHHHHHHcCcHHHHHHHHHHHh
Confidence 445666788889999999999999987532 21 0245678999999999999999999997
Q ss_pred cccCCCChhHHHHHHHHHHHHHhhcCCCCCCCcccccccccccCCchhHHHHHHHHHHHH-----------HHHhhcCCC
Q 035707 232 LYYWNLDIETTARIEKKFAVFLLYSGTDASPPNLRLQMELSFVPRNNIEEAVLLLLILLK-----------KIVLGKIEW 300 (713)
Q Consensus 232 ~~~~~~~~~~~~~i~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~eeA~~ll~~~~~-----------~~~l~~~~~ 300 (713)
....+ .... .. +...|...|++++|+.+|..... .......+.
T Consensus 145 ~~~~~--~~~~----~~--------------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (597)
T 2xpi_A 145 LYNRS--SACR----YL--------------------AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKL 198 (597)
T ss_dssp GGGTC--HHHH----HH--------------------HHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCH
T ss_pred ccccc--hhHH----HH--------------------HHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccch
Confidence 65322 2211 11 11224455677787766521000 000001133
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcc---------------cCCCCh----HHHHHH
Q 035707 301 DPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGE---------------ENSDCN----LELLVA 361 (713)
Q Consensus 301 ~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~---------------~~p~~~----~~~~~~ 361 (713)
++.++..++.+|.+.|++++|.+.|++++...+.....|..++.++... ..+.++ ..+..+
T Consensus 199 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 278 (597)
T 2xpi_A 199 EASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLK 278 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHH
Confidence 5889999999999999999999999999887777777777777665422 011111 122233
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCH
Q 035707 362 SKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDP 441 (713)
Q Consensus 362 a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~ 441 (713)
+..+...|++. +|+.+|+++++ . |.+. .++..+|.+| .+.|++++|+..|++++ ..+|.+.
T Consensus 279 ~~~~~~~g~~~-~A~~~~~~~~~-~-~~~~----~~~~~l~~~~-----------~~~g~~~~A~~~~~~~~-~~~~~~~ 339 (597)
T 2xpi_A 279 LNKTSHEDELR-RAEDYLSSING-L-EKSS----DLLLCKADTL-----------FVRSRFIDVLAITTKIL-EIDPYNL 339 (597)
T ss_dssp SCTTTTHHHHH-HHHHHHHTSTT-G-GGCH----HHHHHHHHHH-----------HHTTCHHHHHHHHHHHH-HHCTTCC
T ss_pred HHHHcCcchHH-HHHHHHHHhhc-C-CchH----HHHHHHHHHH-----------HHhcCHHHHHHHHHHHH-HcCcccH
Confidence 55667788999 99999999988 4 5666 8999999999 88999999999999999 9999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHH
Q 035707 442 YIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKL 521 (713)
Q Consensus 442 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~ 521 (713)
.++..++.++...|++++|+..++++++..|.+. .++..+|.++...|++++|+.+|+++++..| .+..++..++.+
T Consensus 340 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~ 416 (597)
T 2xpi_A 340 DVYPLHLASLHESGEKNKLYLISNDLVDRHPEKA-VTWLAVGIYYLCVNKISEARRYFSKSSTMDP--QFGPAWIGFAHS 416 (597)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccH-HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHH
Confidence 9999999999999999999999999999999988 9999999999999999999999999999988 788999999999
Q ss_pred HHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Q 035707 522 QIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYS 601 (713)
Q Consensus 522 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 601 (713)
+...|++++|++.|++++...|.+ ..+|..+|.+|...|++++|+.+|+++++..|.+
T Consensus 417 ~~~~g~~~~A~~~~~~~~~~~~~~----------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 474 (597)
T 2xpi_A 417 FAIEGEHDQAISAYTTAARLFQGT----------------------HLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD 474 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHTTTTC----------------------SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHcCCHHHHHHHHHHHHHhCccc----------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999886644 7889999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCC-HHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHH
Q 035707 602 ASGWHSTGLLYEAKGLQQEALVSFRKALDA------EPNH-VPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTA 674 (713)
Q Consensus 602 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~------~p~~-~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~ 674 (713)
+.+|..+|.++...|++++|+..|+++++. +|++ ..++..+|.++...|+++ +|+..|+++++.+|+++.+
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~p~~~~~ 552 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYD--AAIDALNQGLLLSTNDANV 552 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHSSCCHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHhCCCChHH
Confidence 999999999999999999999999999988 6664 789999999999999997 9999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHccccCCCC
Q 035707 675 WYNLGLLYKTYAGASALEAVECFEAAALLEESAPV 709 (713)
Q Consensus 675 ~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~~~ 709 (713)
|..+|.+|...|+ +++|..+|+++++++|+++.
T Consensus 553 ~~~l~~~~~~~g~--~~~A~~~~~~~l~~~p~~~~ 585 (597)
T 2xpi_A 553 HTAIALVYLHKKI--PGLAITHLHESLAISPNEIM 585 (597)
T ss_dssp HHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHhCC--HHHHHHHHHHHHhcCCCChH
Confidence 9999999999999 99999999999999999864
No 5
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.4e-34 Score=311.84 Aligned_cols=409 Identities=14% Similarity=0.065 Sum_probs=320.2
Q ss_pred HHHHHHhHHHHHhcCChhHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHhhcCCCCCCCcccccccccccCCchhHHHH
Q 035707 204 NKAVELLPELYKLAGDPDETILSYRRALLYYWNLDIETTARIEKKFAVFLLYSGTDASPPNLRLQMELSFVPRNNIEEAV 283 (713)
Q Consensus 204 ~~a~~~l~~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~i~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~eeA~ 283 (713)
..++..+|..+...|++++|+..|++++...| +.... ..++. .+...|++++|+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~----~~la~--------------------~~~~~g~~~~A~ 59 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKE--DPVFY----SNLSA--------------------CYVSVGDLKKVV 59 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC--CHHHH----HHHHH--------------------HHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc--cHHHH----HhHHH--------------------HHHHHhhHHHHH
Confidence 35677889999999999999999999998753 22111 11111 123335566666
Q ss_pred HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHH
Q 035707 284 LLLLILLKKIVLGKIEWDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASK 363 (713)
Q Consensus 284 ~ll~~~~~~~~l~~~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~ 363 (713)
..+ +.++...|.++.++..++.+|...|+++.|...|++++... |.+.........
T Consensus 60 ~~~-----~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------------------~~~~~~~~~~~~ 115 (514)
T 2gw1_A 60 EMS-----TKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG-------------------DFNDASIEPMLE 115 (514)
T ss_dssp HHH-----HHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-------------------SCCGGGTHHHHH
T ss_pred HHH-----HHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-------------------CCccchHHHHHH
Confidence 655 33344556666677777777777777777777776665432 222111111111
Q ss_pred HHHh---cCCChHHHHHHHHHH-------------------------------HHhhh----------ccCcchHHHHHH
Q 035707 364 ICAE---NKVCIEEGITYARKA-------------------------------LSMLQ----------GKCRQMASIANC 399 (713)
Q Consensus 364 ~~~~---~g~~~~~A~~~~~~a-------------------------------l~~~~----------~~~~~~~~~a~~ 399 (713)
.+.. ..... +++..++.+ +.... |.+ ..++.
T Consensus 116 ~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 190 (514)
T 2gw1_A 116 RNLNKQAMSKLK-EKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNE----ADKEL 190 (514)
T ss_dssp HHHHHHHHHHHT-TC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCH----HHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcH----HHHHH
Confidence 1110 00000 111000000 00000 111 36666
Q ss_pred HHHHHHhhcccccccHHHH---HhcHHHHHHHHHHHHHh-----h--C-------CCCHHHHHHHHHHHHHcCCHHHHHH
Q 035707 400 LLGVLLSSQSRSVVSDSKR---ILKQSQALVALETAEKT-----M--R-------ERDPYIIYHLCLENAEQRKLDVALY 462 (713)
Q Consensus 400 ~lg~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~al~~-----~--~-------p~~~~~~~~la~~~~~~g~~~~A~~ 462 (713)
.+|.++ .. .|++++|+..|++++ . + + |.++.+++.+|.++...|++++|+.
T Consensus 191 ~~~~~~-----------~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 258 (514)
T 2gw1_A 191 MNGLSN-----------LYKRSPESYDKADESFTKAA-RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHE 258 (514)
T ss_dssp HHHHHH-----------HSSCCTTHHHHHHHHHHHHH-HHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHH-----------HHhhhhccHHHHHHHHHHHH-HHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 777766 43 789999999999999 7 5 3 4557789999999999999999999
Q ss_pred HHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 035707 463 YAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVL 542 (713)
Q Consensus 463 ~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 542 (713)
.|++++..+|. . .++..+|.++...|++++|+..+++++...| .+..++..+|.++...|++++|+..|++++...
T Consensus 259 ~~~~~l~~~~~-~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 334 (514)
T 2gw1_A 259 DIKKAIELFPR-V-NSYIYMALIMADRNDSTEYYNYFDKALKLDS--NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD 334 (514)
T ss_dssp HHHHHHHHCCC-H-HHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT--TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC
T ss_pred HHHHHHhhCcc-H-HHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99999999999 6 9999999999999999999999999999998 678899999999999999999999999999986
Q ss_pred hhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHH
Q 035707 543 QFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEAL 622 (713)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~ 622 (713)
|.+ ..++..+|.++...|++++|+.+++++++..|.++.++..+|.++...|++++|+
T Consensus 335 ~~~----------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 392 (514)
T 2gw1_A 335 PEN----------------------IFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKAL 392 (514)
T ss_dssp SSC----------------------SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred hhh----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHH
Confidence 644 6799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCHH------HHHHHHHHHHH---hcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 035707 623 VSFRKALDAEPNHVP------SLVSIARVLRQ---IGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEA 693 (713)
Q Consensus 623 ~~~~~al~~~p~~~~------~~~~la~~~~~---~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A 693 (713)
..|++++...|++.. ++..+|.++.. .|+++ +|+..++++++.+|+++.++..+|.++...|+ +++|
T Consensus 393 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~--~~~A 468 (514)
T 2gw1_A 393 KQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFI--EATNLLEKASKLDPRSEQAKIGLAQMKLQQED--IDEA 468 (514)
T ss_dssp HHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHH--HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHH
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHH--HHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC--HHHH
Confidence 999999999888755 99999999999 99987 99999999999999999999999999999999 9999
Q ss_pred HHHHHHHHccccCCCC
Q 035707 694 VECFEAAALLEESAPV 709 (713)
Q Consensus 694 ~~~~~~a~~l~p~~~~ 709 (713)
..+|++++++.|+++.
T Consensus 469 ~~~~~~a~~~~~~~~~ 484 (514)
T 2gw1_A 469 ITLFEESADLARTMEE 484 (514)
T ss_dssp HHHHHHHHHHCSSHHH
T ss_pred HHHHHHHHHhccccHH
Confidence 9999999999998753
No 6
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.9e-33 Score=303.65 Aligned_cols=435 Identities=12% Similarity=0.037 Sum_probs=348.7
Q ss_pred HHHHHHhhhhhhccCchHHHHHHHHHHHHHHHHhcCCCCCCCCCcccchHHHHHHHHHHhHHHHHhcCChhHHHHHHHHH
Q 035707 151 VEAIFLKTKSLQGLGRFEEACQSCKVILDTVEHALPEGLPGNHSIDCKLQETLNKAVELLPELYKLAGDPDETILSYRRA 230 (713)
Q Consensus 151 ~e~~~~~~~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~~~~a 230 (713)
+++++.+|.++.+.|++++|+..|+.++... |+ ..++..+|.++...|++++|+..|+++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~------------~~~~~~la~~~~~~g~~~~A~~~~~~a 65 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--------ED------------PVFYSNLSACYVSVGDLKKVVEMSTKA 65 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--------CC------------HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--------cc------------HHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 4788999999999999999999999998842 21 236788999999999999999999999
Q ss_pred hcccCCCChhHHHHHHHHHHHHHhhcCCCCCCCcccccccccccCCchhHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHH
Q 035707 231 LLYYWNLDIETTARIEKKFAVFLLYSGTDASPPNLRLQMELSFVPRNNIEEAVLLLLILLKKIVLGKIEWDPSIIDHLSF 310 (713)
Q Consensus 231 l~~~~~~~~~~~~~i~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~eeA~~ll~~~~~~~~l~~~~~~~~~~~~l~~ 310 (713)
+..+|+.. ... ..++ ..+...|++++|+..+. .++...|.+......+..
T Consensus 66 l~~~p~~~-~~~----~~l~--------------------~~~~~~g~~~~A~~~~~-----~~~~~~~~~~~~~~~~~~ 115 (514)
T 2gw1_A 66 LELKPDYS-KVL----LRRA--------------------SANEGLGKFADAMFDLS-----VLSLNGDFNDASIEPMLE 115 (514)
T ss_dssp HHHCSCCH-HHH----HHHH--------------------HHHHHTTCHHHHHHHHH-----HHHHSSSCCGGGTHHHHH
T ss_pred hccChHHH-HHH----HHHH--------------------HHHHHHhhHHHHHHHHH-----HHHhcCCCccchHHHHHH
Confidence 98864411 111 1111 12455678899988774 344455554444333333
Q ss_pred HHHhcCcHHHHHHHH---HhhC-----------------CCCCCchhhHHHHHHHhhcc----------cCCCChHHHHH
Q 035707 311 ALSVSGELWTLAHQV---EELL-----------------PGVMGNKKRYCTLALCYLGE----------ENSDCNLELLV 360 (713)
Q Consensus 311 a~~~~g~~~~a~~~~---e~~l-----------------~~~~~~~~~~~~la~~~~~~----------~~p~~~~~~~~ 360 (713)
.+........+.+.+ +.+. ....+..... ..+... ..|++...++.
T Consensus 116 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (514)
T 2gw1_A 116 RNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM----ASFFGIFKPELTFANYDESNEADKELM 191 (514)
T ss_dssp HHHHHHHHHHHTTC---------------------------CCCCHHHH----HHHHTTSCCCCCCSSCCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH----HHHHhhcCHHHHHHHhcCCcHHHHHHH
Confidence 333322222222211 1000 0001111111 111111 33667889999
Q ss_pred HHHHHHh---cCCChHHHHHHHHHHHHh----h--hccCc---chHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHH
Q 035707 361 ASKICAE---NKVCIEEGITYARKALSM----L--QGKCR---QMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVA 428 (713)
Q Consensus 361 ~a~~~~~---~g~~~~~A~~~~~~al~~----~--~~~~~---~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~ 428 (713)
.|..++. .|++. +|+.+++++++. . .|.+. .....++..+|.++ ...|++++|+..
T Consensus 192 ~~~~~~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~A~~~ 259 (514)
T 2gw1_A 192 NGLSNLYKRSPESYD-KADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFK-----------FLKNDPLGAHED 259 (514)
T ss_dssp HHHHHHSSCCTTHHH-HHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHH-----------HHSSCHHHHHHH
T ss_pred HHHHHHHhhhhccHH-HHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHH-----------HHCCCHHHHHHH
Confidence 9988876 89999 999999999982 1 23321 23358899999999 888999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCC
Q 035707 429 LETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGK 508 (713)
Q Consensus 429 ~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 508 (713)
|++++ ..+|. +.++..+|.++...|++++|+..+++++..+|.+. .++..+|.++...|++++|+..++++++..|
T Consensus 260 ~~~~l-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~- 335 (514)
T 2gw1_A 260 IKKAI-ELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNS-SVYYHRGQMNFILQNYDQAGKDFDKAKELDP- 335 (514)
T ss_dssp HHHHH-HHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCT-HHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS-
T ss_pred HHHHH-hhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh-
Confidence 99999 99999 99999999999999999999999999999999998 9999999999999999999999999999998
Q ss_pred CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHH
Q 035707 509 WDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAE 588 (713)
Q Consensus 509 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 588 (713)
.+..++..+|.++...|++++|+..|++++...|.+ +.++..+|.++...|++++|+
T Consensus 336 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----------------------~~~~~~la~~~~~~~~~~~A~ 392 (514)
T 2gw1_A 336 -ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEA----------------------PEVPNFFAEILTDKNDFDKAL 392 (514)
T ss_dssp -SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTC----------------------SHHHHHHHHHHHHTTCHHHHH
T ss_pred -hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccC----------------------HHHHHHHHHHHHHCCCHHHHH
Confidence 678899999999999999999999999999987654 688999999999999999999
Q ss_pred HHHHHHHhcCCCChh------HHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHH
Q 035707 589 VCLSKSKAINPYSAS------GWHSTGLLYEA---KGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRC 659 (713)
Q Consensus 589 ~~~~~al~~~p~~~~------~~~~lg~~~~~---~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~ 659 (713)
.+|++++...|.++. ++..+|.++.. .|++++|+..|++++..+|+++.++..+|.++...|+++ +|+.
T Consensus 393 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~--~A~~ 470 (514)
T 2gw1_A 393 KQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDID--EAIT 470 (514)
T ss_dssp HHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--HHHH
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHH--HHHH
Confidence 999999999988865 99999999999 999999999999999999999999999999999999997 9999
Q ss_pred HHHHHHhhCCCCHHHHHHHHH
Q 035707 660 FLTDALRLDRTNTTAWYNLGL 680 (713)
Q Consensus 660 ~~~~al~~~p~~~~~~~~lg~ 680 (713)
+|+++++++|+++.++..+..
T Consensus 471 ~~~~a~~~~~~~~~~~~~~~~ 491 (514)
T 2gw1_A 471 LFEESADLARTMEEKLQAITF 491 (514)
T ss_dssp HHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHhccccHHHHHHHHH
Confidence 999999999999998877643
No 7
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=1.7e-32 Score=303.74 Aligned_cols=417 Identities=14% Similarity=0.084 Sum_probs=323.8
Q ss_pred HHHHHHHhHHHHHhcCChhHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHhhcCCCCCCCcccccccccccCCchhHHH
Q 035707 203 LNKAVELLPELYKLAGDPDETILSYRRALLYYWNLDIETTARIEKKFAVFLLYSGTDASPPNLRLQMELSFVPRNNIEEA 282 (713)
Q Consensus 203 ~~~a~~~l~~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~i~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~eeA 282 (713)
...++..+|..+...|++++|+..|++++...|+. ... ...++. .+...|++++|
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~----~~~la~--------------------~~~~~g~~~~A 78 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNE-PVF----YSNISA--------------------CYISTGDLEKV 78 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTC-HHH----HHHHHH--------------------HHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC-cHH----HHHHHH--------------------HHHHcCCHHHH
Confidence 45678889999999999999999999999975431 111 111121 23445667888
Q ss_pred HHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHH
Q 035707 283 VLLLLILLKKIVLGKIEWDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVAS 362 (713)
Q Consensus 283 ~~ll~~~~~~~~l~~~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a 362 (713)
+..+ ..++...|.++.++..++.++...|+++.|...|+ .+.. +|+......
T Consensus 79 ~~~~-----~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~-------------------~~~~~~~~~--- 130 (537)
T 3fp2_A 79 IEFT-----TKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSL-------------------NGDFDGASI--- 130 (537)
T ss_dssp HHHH-----HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC--------------------------------
T ss_pred HHHH-----HHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhc-------------------CCCCChHHH---
Confidence 8776 34455678888888888888888899888888886 4432 233332221
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhhhccCcch---------------------------------HHHHHHHHHHHHhhcc
Q 035707 363 KICAENKVCIEEGITYARKALSMLQGKCRQM---------------------------------ASIANCLLGVLLSSQS 409 (713)
Q Consensus 363 ~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~---------------------------------~~~a~~~lg~~~~~~~ 409 (713)
..+...+... +|+..+++++. ..|..... .......++..+...+
T Consensus 131 ~~~~~~~~~~-~a~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 208 (537)
T 3fp2_A 131 EPMLERNLNK-QAMKVLNENLS-KDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATD 208 (537)
T ss_dssp -CHHHHHHHH-HHHHHHHHHCC--------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSH
T ss_pred HHHHHHHHHH-HHHHHHHHHHH-hCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhh
Confidence 1223333345 77777777765 22111100 0001222222221000
Q ss_pred cccccHHHHHhcHHHHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHH
Q 035707 410 RSVVSDSKRILKQSQALVALETAEKTMRERDPY-------IIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLL 482 (713)
Q Consensus 410 ~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~l 482 (713)
.......+++++|+..|++++ ..+|+++. +++.+|.++...|++++|+..|++++..+|. . .++..+
T Consensus 209 ---~~~~~a~~~~~~A~~~~~~~l-~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~-~~~~~l 282 (537)
T 3fp2_A 209 ---EGYLVANDLLTKSTDMYHSLL-SANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-P-NSYIFL 282 (537)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-C--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-H-HHHHHH
T ss_pred ---hhhHHHHHHHHHHHHHHHHHH-HHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-c-hHHHHH
Confidence 001134578999999999999 99999865 5778889999999999999999999999999 6 999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccC
Q 035707 483 ARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNH 562 (713)
Q Consensus 483 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 562 (713)
|.++...|++++|+..++++++..| .+..++..+|.++...|++++|+..|++++...|.+
T Consensus 283 ~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----------------- 343 (537)
T 3fp2_A 283 ALTLADKENSQEFFKFFQKAVDLNP--EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN----------------- 343 (537)
T ss_dssp HHHTCCSSCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------------
T ss_pred HHHHHHhcCHHHHHHHHHHHhccCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-----------------
Confidence 9999999999999999999999998 789999999999999999999999999999997654
Q ss_pred CCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-----
Q 035707 563 DRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVP----- 637 (713)
Q Consensus 563 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~----- 637 (713)
..++..+|.++...|++++|+.+|+++++..|.++.++..+|.++...|++++|+..|++++...|++..
T Consensus 344 -----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 418 (537)
T 3fp2_A 344 -----VYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI 418 (537)
T ss_dssp -----SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTT
T ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHH
Confidence 6889999999999999999999999999999999999999999999999999999999999998776543
Q ss_pred -HHHHHHHHHHHh----------cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccC
Q 035707 638 -SLVSIARVLRQI----------GGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALLEES 706 (713)
Q Consensus 638 -~~~~la~~~~~~----------g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~ 706 (713)
.+..+|.++... |+++ +|+.+|+++++.+|+++.++..+|.+|...|+ +++|+.+|++++++.|+
T Consensus 419 ~~~~~~a~~~~~~~~~~~~~~~~~~~~--~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 419 GPLIGKATILARQSSQDPTQLDEEKFN--AAIKLLTKACELDPRSEQAKIGLAQLKLQMEK--IDEAIELFEDSAILART 494 (537)
T ss_dssp HHHHHHHHHHHHHHTC----CCHHHHH--HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhhccchhhhHhHHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhCCC
Confidence 356778899998 9987 99999999999999999999999999999999 99999999999999998
Q ss_pred CC
Q 035707 707 AP 708 (713)
Q Consensus 707 ~~ 708 (713)
++
T Consensus 495 ~~ 496 (537)
T 3fp2_A 495 MD 496 (537)
T ss_dssp CH
T ss_pred cH
Confidence 65
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=1.9e-32 Score=296.19 Aligned_cols=360 Identities=14% Similarity=0.066 Sum_probs=318.5
Q ss_pred hhcCCCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHhcCCChHH
Q 035707 295 LGKIEWDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICAENKVCIEE 374 (713)
Q Consensus 295 l~~~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~~ 374 (713)
+...|.++..+..++..+...|+++.|...|++++. .+|+++.++..+|.++...|++. +
T Consensus 19 ~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~-------------------~~p~~~~~~~~l~~~~~~~g~~~-~ 78 (450)
T 2y4t_A 19 YFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVD-------------------GDPDNYIAYYRRATVFLAMGKSK-A 78 (450)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------HCTTCHHHHHHHHHHHHHTTCHH-H
T ss_pred ccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------------hCCccHHHHHHHHHHHHHCCCHH-H
Confidence 456678889999999999999999999999999875 36889999999999999999999 9
Q ss_pred HHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCH---HHHHHH----
Q 035707 375 GITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDP---YIIYHL---- 447 (713)
Q Consensus 375 A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~---~~~~~l---- 447 (713)
|+..|+++++ ..|.+. .++..+|.+| ...|++++|+..|++++ ..+|++. .++..+
T Consensus 79 A~~~~~~al~-~~p~~~----~~~~~l~~~~-----------~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~l~~~~ 141 (450)
T 2y4t_A 79 ALPDLTKVIQ-LKMDFT----AARLQRGHLL-----------LKQGKLDEAEDDFKKVL-KSNPSENEEKEAQSQLIKSD 141 (450)
T ss_dssp HHHHHHHHHH-HCTTCH----HHHHHHHHHH-----------HHTTCHHHHHHHHHHHH-TSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-cCCCcH----HHHHHHHHHH-----------HHcCCHHHHHHHHHHHH-hcCCCChhhHHHHHHHHHHH
Confidence 9999999999 788888 9999999999 88999999999999999 9999988 776655
Q ss_pred --------HHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHH
Q 035707 448 --------CLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKA 519 (713)
Q Consensus 448 --------a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la 519 (713)
|.++...|++++|+..|++++...|.+. .++..+|.++...|++++|+..|+++++.+| .+..++..+|
T Consensus 142 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~ 218 (450)
T 2y4t_A 142 EMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDA-ELRELRAECFIKEGEPRKAISDLKAASKLKN--DNTEAFYKIS 218 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC--SCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHH
Confidence 6669999999999999999999999998 9999999999999999999999999999998 7899999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Q 035707 520 KLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINP 599 (713)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 599 (713)
.++...|++++|+..|++++...|++...+.....+. ....+..+|.++...|++++|+.+|++++.+.|
T Consensus 219 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p 288 (450)
T 2y4t_A 219 TLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK----------KLNKLIESAEELIRDGRYTDATSKYESVMKTEP 288 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH----------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999876633222111111 123345559999999999999999999999999
Q ss_pred CChh----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHH
Q 035707 600 YSAS----GWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAW 675 (713)
Q Consensus 600 ~~~~----~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~ 675 (713)
.++. ++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|+++ +|+..|+++++++|+++.++
T Consensus 289 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~ 366 (450)
T 2y4t_A 289 SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYD--EAIQDYETAQEHNENDQQIR 366 (450)
T ss_dssp SSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHTTSSSCHHHH
T ss_pred cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHhCcchHHHH
Confidence 8854 78999999999999999999999999999999999999999999999997 99999999999999999999
Q ss_pred HHHHHH------------HHHhC-----CCCHHHHHHHHHH-HHccccCCC
Q 035707 676 YNLGLL------------YKTYA-----GASALEAVECFEA-AALLEESAP 708 (713)
Q Consensus 676 ~~lg~~------------~~~~g-----~~~~~~A~~~~~~-a~~l~p~~~ 708 (713)
..++.+ |...| . .+++...|++ +++.+|++.
T Consensus 367 ~~l~~~~~~~~~~~~~~~y~~lg~~~~~~--~~~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 367 EGLEKAQRLLKQSQKRDYYKILGVKRNAK--KQEIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp HHHHHHHHHHHHHHSCCSGGGSCSSTTCC--TTHHHHHHHHHHHHSCGGGC
T ss_pred HHHHHHHHHhhcccchhHHHHhCCCccCC--HHHHHHHHHHHHHHhCCCCC
Confidence 999955 44445 4 6788999997 888888764
No 9
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=1.1e-31 Score=280.18 Aligned_cols=309 Identities=15% Similarity=0.073 Sum_probs=289.4
Q ss_pred ChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHH
Q 035707 354 CNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAE 433 (713)
Q Consensus 354 ~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 433 (713)
++..++.+|..+...|++. +|+.+|+++++ ..|.+. .++..+|.++ ...|++++|+..|++++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~-~A~~~~~~~l~-~~p~~~----~~~~~~a~~~-----------~~~~~~~~A~~~~~~~~ 64 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLA-DALSQFHAAVD-GDPDNY----IAYYRRATVF-----------LAMGKSKAALPDLTKVI 64 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHH-HHHHHHHHHHH-HCTTCH----HHHHHHHHHH-----------HHHTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHH-HHHHHHHHHHh-hCcccH----HHHHHHHHHH-----------HHccCHHHHHHHHHHHH
Confidence 4678899999999999999 99999999999 888888 9999999999 89999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc---CCchHHHHHH------------HHHHHHcCCHHHHHHH
Q 035707 434 KTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEA---RSNVKGYLLL------------ARVLSAQKQFADAESV 498 (713)
Q Consensus 434 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~~l------------a~~~~~~g~~~~A~~~ 498 (713)
..+|+++.+++.+|.++...|++++|+..|+++++..| ++. .++..+ |.++...|++++|+..
T Consensus 65 -~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 142 (359)
T 3ieg_A 65 -ALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEK-EAESQLVKADEMQRLRSQALDAFDGADYTAAITF 142 (359)
T ss_dssp -HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -HhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChH-HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 99999999999999999999999999999999999999 777 777766 7999999999999999
Q ss_pred HHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHH
Q 035707 499 INDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVY 578 (713)
Q Consensus 499 ~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 578 (713)
++++++..| .+..++..+|.++...|++++|+..+++++...|.+ +.++..+|.++
T Consensus 143 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----------------------~~~~~~la~~~ 198 (359)
T 3ieg_A 143 LDKILEVCV--WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDN----------------------TEAFYKISTLY 198 (359)
T ss_dssp HHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC----------------------HHHHHHHHHHH
T ss_pred HHHHHHhCC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHH
Confidence 999999998 789999999999999999999999999999886544 88999999999
Q ss_pred HHCCCHHHHHHHHHHHHhcCCCChhHHH------------HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH----HHHHH
Q 035707 579 TSLSQWRDAEVCLSKSKAINPYSASGWH------------STGLLYEAKGLQQEALVSFRKALDAEPNHVP----SLVSI 642 (713)
Q Consensus 579 ~~~g~~~~A~~~~~~al~~~p~~~~~~~------------~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~----~~~~l 642 (713)
...|++++|+..|+++++..|.+..++. .+|.++...|++++|+..|++++...|+++. ++..+
T Consensus 199 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 278 (359)
T 3ieg_A 199 YQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERI 278 (359)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 9999999999999999999999988665 3488899999999999999999999999874 46679
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCCCC
Q 035707 643 ARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALLEESAPV 709 (713)
Q Consensus 643 a~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~~~ 709 (713)
|.++...|+++ +|+..++++++.+|+++.+|+.+|.++...|+ +++|..+|+++++++|+++.
T Consensus 279 a~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~A~~~~~~a~~~~p~~~~ 341 (359)
T 3ieg_A 279 CHCFSKDEKPV--EAIRICSEVLQMEPDNVNALKDRAEAYLIEEM--YDEAIQDYEAAQEHNENDQQ 341 (359)
T ss_dssp HHHHHHTTCHH--HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHccCHH--HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCChH
Confidence 99999999997 99999999999999999999999999999999 99999999999999998764
No 10
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=6.5e-31 Score=274.45 Aligned_cols=335 Identities=14% Similarity=0.070 Sum_probs=303.9
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHhcCCChHHHHHHHH
Q 035707 301 DPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICAENKVCIEEGITYAR 380 (713)
Q Consensus 301 ~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~ 380 (713)
++..+..++..+...|+++.|...|++++. .+|+++.++..+|.++...|++. +|+..++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~-------------------~~p~~~~~~~~~a~~~~~~~~~~-~A~~~~~ 61 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVD-------------------GDPDNYIAYYRRATVFLAMGKSK-AALPDLT 61 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------HCTTCHHHHHHHHHHHHHHTCHH-HHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------------------hCcccHHHHHHHHHHHHHccCHH-HHHHHHH
Confidence 466788899999999999999999999876 36889999999999999999999 9999999
Q ss_pred HHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCC---CCHHHHHHH----------
Q 035707 381 KALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRE---RDPYIIYHL---------- 447 (713)
Q Consensus 381 ~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p---~~~~~~~~l---------- 447 (713)
++++ ..|.+. .++..+|.++ ...|++++|+..|++++ ..+| +++.++..+
T Consensus 62 ~~~~-~~~~~~----~~~~~l~~~~-----------~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~ 124 (359)
T 3ieg_A 62 KVIA-LKMDFT----AARLQRGHLL-----------LKQGKLDEAEDDFKKVL-KSNPSEQEEKEAESQLVKADEMQRLR 124 (359)
T ss_dssp HHHH-HCTTCH----HHHHHHHHHH-----------HHHTCHHHHHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-hCCCcc----hHHHHHHHHH-----------HHcCChHHHHHHHHHHH-hcCCcccChHHHHHHHHHHHHHHHHH
Confidence 9999 788888 9999999999 88999999999999999 9999 888888777
Q ss_pred --HHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHh
Q 035707 448 --CLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQ 525 (713)
Q Consensus 448 --a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~ 525 (713)
|.++...|++++|+..++++++..|.++ .++..+|.++...|++++|+..++++++..| .+..++..+|.++...
T Consensus 125 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~ 201 (359)
T 3ieg_A 125 SQALDAFDGADYTAAITFLDKILEVCVWDA-ELRELRAECFIKEGEPRKAISDLKAASKLKS--DNTEAFYKISTLYYQL 201 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCch-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHc
Confidence 7999999999999999999999999998 9999999999999999999999999999998 7899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh--
Q 035707 526 GRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSAS-- 603 (713)
Q Consensus 526 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-- 603 (713)
|++++|+..|++++...|++...+.....+. .......+|.++...|++++|+..+++++...|.++.
T Consensus 202 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~----------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 271 (359)
T 3ieg_A 202 GDHELSLSEVRECLKLDQDHKRCFAHYKQVK----------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYT 271 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH
T ss_pred CCHHHHHHHHHHHHhhCccchHHHHHHHHHH----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHH
Confidence 9999999999999999887633322111111 1333456699999999999999999999999999874
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 035707 604 --GWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLL 681 (713)
Q Consensus 604 --~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~ 681 (713)
++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+++ +|+.+|+++++++|+++.++..++.+
T Consensus 272 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~A~~~~~~a~~~~p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 272 VRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYD--EAIQDYEAAQEHNENDQQIREGLEKA 349 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 46679999999999999999999999999999999999999999999997 99999999999999999999999998
Q ss_pred HHHhCC
Q 035707 682 YKTYAG 687 (713)
Q Consensus 682 ~~~~g~ 687 (713)
+...++
T Consensus 350 ~~~~~~ 355 (359)
T 3ieg_A 350 QRLLKQ 355 (359)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877654
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=1.6e-31 Score=295.94 Aligned_cols=450 Identities=14% Similarity=0.068 Sum_probs=328.9
Q ss_pred HHHHHHHhhhHhhhcCCHHHHHhhhhcCCccccchhhhhhhhhhccccccCCCCCCCCCcchhHHHHHHHHHHHhhhhhh
Q 035707 83 YEEARALLGRLEFQKGNIEAALHVFEGIDVAAVTSRMKVSLSRRCDQNRRRSQSDAAPPMSMHAVSLLVEAIFLKTKSLQ 162 (713)
Q Consensus 83 ~~~a~~llg~~~~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 162 (713)
..++++.+|..++.+|+|++|+..|+++. ...| .. .++++.+|.++.
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al------~~~p----------------------~~-----~~~~~~la~~~~ 70 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAI------ELDP----------------------NE-----PVFYSNISACYI 70 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHH------HHCT----------------------TC-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHH------hhCC----------------------CC-----cHHHHHHHHHHH
Confidence 67889999999999999999999998752 1111 00 256788899999
Q ss_pred ccCchHHHHHHHHHHHHHHHHhcCCCCCCCCCcccchHHHHHHHHHHhHHHHHhcCChhHHHHHHHHHhcccCCCChhHH
Q 035707 163 GLGRFEEACQSCKVILDTVEHALPEGLPGNHSIDCKLQETLNKAVELLPELYKLAGDPDETILSYRRALLYYWNLDIETT 242 (713)
Q Consensus 163 ~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~ 242 (713)
++|++++|++.|++++... |+ ...++..+|.++...|++++|+..|+ ++...++......
T Consensus 71 ~~g~~~~A~~~~~~al~~~--------p~-----------~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~ 130 (537)
T 3fp2_A 71 STGDLEKVIEFTTKALEIK--------PD-----------HSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASI 130 (537)
T ss_dssp HHTCHHHHHHHHHHHHHHC--------TT-----------CHHHHHHHHHHHHHHTCHHHHHHHHH-HHC----------
T ss_pred HcCCHHHHHHHHHHHHhcC--------Cc-----------hHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHH
Confidence 9999999999999988742 22 12467889999999999999999996 6665544332221
Q ss_pred HHH----HHHHHHHHhhcCCCCCCCccccc-----ccccccCCchhHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Q 035707 243 ARI----EKKFAVFLLYSGTDASPPNLRLQ-----MELSFVPRNNIEEAVLLLLILLKKIVLGKIEWDPSIIDHLSFALS 313 (713)
Q Consensus 243 ~~i----~~~~a~~ll~~~~~~~~~~~~~~-----~~~~~~~~~~~eeA~~ll~~~~~~~~l~~~~~~~~~~~~l~~a~~ 313 (713)
... ....+...+.......|...... ....+......+.++..+ .......+....+...+...+.
T Consensus 131 ~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~ 205 (537)
T 3fp2_A 131 EPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV-----NTSSNYDTAYALLSDALQRLYS 205 (537)
T ss_dssp -CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS-----CCCCSSCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH-----hhccccccHHHHHHHHHHHHHH
Confidence 111 11122222222221111100000 000000001111111000 0000001111123333333333
Q ss_pred h--------cCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 035707 314 V--------SGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICAENKVCIEEGITYARKALSM 385 (713)
Q Consensus 314 ~--------~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~ 385 (713)
. .|+++.|...|++++...+.....|..++ .++..+|.++...|++. +|+.++++++.
T Consensus 206 ~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~------------~~~~~~g~~~~~~~~~~-~A~~~~~~~~~- 271 (537)
T 3fp2_A 206 ATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAA------------LALCYTGIFHFLKNNLL-DAQVLLQESIN- 271 (537)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHH------------HHHHHHHHHHHHTTCHH-HHHHHHHHHHH-
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHH------------HHHHHHHHHHHhcccHH-HHHHHHHHHHh-
Confidence 2 35788999999998886555444443333 35677889999999999 99999999999
Q ss_pred hhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 035707 386 LQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAK 465 (713)
Q Consensus 386 ~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 465 (713)
..|. . .++..+|.++ ...|++++|+..|++++ ..+|+++.++..+|.++...|++++|+..|+
T Consensus 272 ~~~~-~----~~~~~l~~~~-----------~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 272 LHPT-P----NSYIFLALTL-----------ADKENSQEFFKFFQKAV-DLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp HCCC-H----HHHHHHHHHT-----------CCSSCCHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCC-c----hHHHHHHHHH-----------HHhcCHHHHHHHHHHHh-ccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 7777 6 8999999999 66777799999999999 9999999999999999999999999999999
Q ss_pred HHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 035707 466 KLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFR 545 (713)
Q Consensus 466 ~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 545 (713)
+++..+|.+. .++..+|.++...|++++|+..++++++..| .+..++..+|.++...|++++|+..|++++...|.+
T Consensus 335 ~a~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 335 KAQSLNPENV-YPYIQLACLLYKQGKFTESEAFFNETKLKFP--TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HHHHHCTTCS-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence 9999999999 9999999999999999999999999999998 778899999999999999999999999999998865
Q ss_pred hhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHc
Q 035707 546 KKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSL----------SQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAK 615 (713)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 615 (713)
... ......+..+|.++... |++++|+..|+++++.+|.++.++..+|.++...
T Consensus 412 ~~~----------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 475 (537)
T 3fp2_A 412 EKI----------------HVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQM 475 (537)
T ss_dssp SSC----------------SSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred hhh----------------HHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 222 22244567788899998 9999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHH
Q 035707 616 GLQQEALVSFRKALDAEPNHVPSLV 640 (713)
Q Consensus 616 g~~~eA~~~~~~al~~~p~~~~~~~ 640 (713)
|++++|+..|++++++.|+......
T Consensus 476 g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 476 EKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp TCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 9999999999999999999887654
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=3.1e-31 Score=286.73 Aligned_cols=314 Identities=15% Similarity=0.064 Sum_probs=292.1
Q ss_pred cCCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHH
Q 035707 350 ENSDCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVAL 429 (713)
Q Consensus 350 ~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~ 429 (713)
.+|+++..++.+|..+...|++. +|+.+|+++++ ..|.+. .+++.+|.++ ...|++++|+..|
T Consensus 21 ~~p~~~~~~~~~~~~~~~~g~~~-~A~~~~~~~l~-~~p~~~----~~~~~l~~~~-----------~~~g~~~~A~~~~ 83 (450)
T 2y4t_A 21 QSMADVEKHLELGKKLLAAGQLA-DALSQFHAAVD-GDPDNY----IAYYRRATVF-----------LAMGKSKAALPDL 83 (450)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHH-HCTTCH----HHHHHHHHHH-----------HHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHH-hCCccH----HHHHHHHHHH-----------HHCCCHHHHHHHH
Confidence 46889999999999999999999 99999999999 788887 9999999999 8899999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCch--HH------------HHHHHHHHHHcCCHHHH
Q 035707 430 ETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNV--KG------------YLLLARVLSAQKQFADA 495 (713)
Q Consensus 430 ~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~------------~~~la~~~~~~g~~~~A 495 (713)
++++ ..+|+++.+++.+|.+|...|++++|+..|++++..+|.+.. .+ +..+|.++...|++++|
T Consensus 84 ~~al-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 84 TKVI-QLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA 162 (450)
T ss_dssp HHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHH-hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999 999999999999999999999999999999999999887530 22 34457779999999999
Q ss_pred HHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHH
Q 035707 496 ESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLA 575 (713)
Q Consensus 496 ~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 575 (713)
+..|+++++..| .+..++..+|.++...|++++|+..|++++...|.+ +.+|..+|
T Consensus 163 ~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------------------~~~~~~l~ 218 (450)
T 2y4t_A 163 IAFLDKILEVCV--WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN----------------------TEAFYKIS 218 (450)
T ss_dssp HHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC----------------------HHHHHHHH
T ss_pred HHHHHHHHHhCC--CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHH
Confidence 999999999998 789999999999999999999999999999997654 88999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHH------------HHHHHHcCCHHHHHHHHHHHHhcCCCCHH----HH
Q 035707 576 NVYTSLSQWRDAEVCLSKSKAINPYSASGWHST------------GLLYEAKGLQQEALVSFRKALDAEPNHVP----SL 639 (713)
Q Consensus 576 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------------g~~~~~~g~~~eA~~~~~~al~~~p~~~~----~~ 639 (713)
.+|...|++++|+..|++++...|++...+..+ |.++...|++++|+..|++++...|+++. .+
T Consensus 219 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~ 298 (450)
T 2y4t_A 219 TLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSK 298 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 999999999999999999999999998888766 99999999999999999999999999854 78
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCCCC
Q 035707 640 VSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALLEESAPV 709 (713)
Q Consensus 640 ~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~~~ 709 (713)
..+|.++...|+++ +|+.+++++++.+|+++.+|..+|.++...|+ +++|+.+|+++++++|+++.
T Consensus 299 ~~l~~~~~~~g~~~--~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~--~~~A~~~~~~al~~~p~~~~ 364 (450)
T 2y4t_A 299 ERICHCFSKDEKPV--EAIRVCSEVLQMEPDNVNALKDRAEAYLIEEM--YDEAIQDYETAQEHNENDQQ 364 (450)
T ss_dssp HHHHHHHHTTTCHH--HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSCHH
T ss_pred HHHHHHHHHCCCHH--HHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhCcchHH
Confidence 89999999999997 99999999999999999999999999999999 99999999999999998764
No 13
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=6.7e-31 Score=286.00 Aligned_cols=416 Identities=11% Similarity=-0.007 Sum_probs=305.7
Q ss_pred ccCchHHHHHHHHHHHHHHHHhcCCCCCCCCCcccchHHHHHHHHHHhHHHHHhcCChhHHHHHHHHHhcccCCCChhHH
Q 035707 163 GLGRFEEACQSCKVILDTVEHALPEGLPGNHSIDCKLQETLNKAVELLPELYKLAGDPDETILSYRRALLYYWNLDIETT 242 (713)
Q Consensus 163 ~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~ 242 (713)
.+++.+.++..++..+....... +... ....+..||.++...|++++|+..|++++.....
T Consensus 23 ~l~~~~~~l~~~e~~~~~~~~~~----~~~~---------~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~------ 83 (472)
T 4g1t_A 23 NLMEGENSLDDFEDKVFYRTEFQ----NREF---------KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQ------ 83 (472)
T ss_dssp CTTTTCCCHHHHHHHHHHHTTSC----C------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhC----CChh---------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh------
Confidence 45677777766665444221111 1111 1235678999999999999999999999875100
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcccccccccccCCchhHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCcHHHHH
Q 035707 243 ARIEKKFAVFLLYSGTDASPPNLRLQMELSFVPRNNIEEAVLLLLILLKKIVLGKIEWDPSIIDHLSFALSVSGELWTLA 322 (713)
Q Consensus 243 ~~i~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~eeA~~ll~~~~~~~~l~~~~~~~~~~~~l~~a~~~~g~~~~a~ 322 (713)
.. + ....|....++..++.+|...|++++|.
T Consensus 84 -----------~~-~-------------------------------------~~~~~~~~~~~~nla~~y~~~g~~~~A~ 114 (472)
T 4g1t_A 84 -----------EH-A-------------------------------------DQAEIRSLVTWGNYAWVYYHMGRLSDVQ 114 (472)
T ss_dssp -----------HS-G-------------------------------------GGCTTTTHHHHHHHHHHHHHTTCHHHHH
T ss_pred -----------cC-c-------------------------------------cccchHHHHHHHHHHHHHHHcCChHHHH
Confidence 00 0 0112334566788999999999999999
Q ss_pred HHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhhhccCcchHHHHHHH
Q 035707 323 HQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICAE--NKVCIEEGITYARKALSMLQGKCRQMASIANCL 400 (713)
Q Consensus 323 ~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~--~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 400 (713)
..+++++..... +....++..+..+...|..+.. .++++ +|+.+|+++++ .+|+++ .++..
T Consensus 115 ~~~~ka~~i~~~-----------~~~~~~~~~~~~~~~~g~~~~~~~~~~y~-~A~~~~~kal~-~~p~~~----~~~~~ 177 (472)
T 4g1t_A 115 IYVDKVKHVCEK-----------FSSPYRIESPELDCEEGWTRLKCGGNQNE-RAKVCFEKALE-KKPKNP----EFTSG 177 (472)
T ss_dssp HHHHHHHHHHHH-----------SCCSSCCCCHHHHHHHHHHHHHHCTTHHH-HHHHHHHHHHH-HSTTCH----HHHHH
T ss_pred HHHHHHHHHhHh-----------cccccchhhHHHHHHHHHHHHHHccccHH-HHHHHHHHHHH-hCCCCH----HHHHH
Confidence 999987532110 0001245667777777766554 45688 99999999999 899998 88988
Q ss_pred HHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhhcCCch
Q 035707 401 LGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQ----RKLDVALYYAKKLLNLEARSNV 476 (713)
Q Consensus 401 lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~~l~~~p~~~~ 476 (713)
+|.++... ...++.++|++.|++++ .++|+++.++..+|..+... +++++|+.++++++..+|.+.
T Consensus 178 ~~~~~~~l--------~~~~~~~~al~~~~~al-~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~- 247 (472)
T 4g1t_A 178 LAIASYRL--------DNWPPSQNAIDPLRQAI-RLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVT- 247 (472)
T ss_dssp HHHHHHHH--------HHSCCCCCTHHHHHHHH-HHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCH-
T ss_pred HHHHHHHh--------cCchHHHHHHHHHHHHh-hcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHH-
Confidence 88887321 22355678999999999 99999999999998877654 678899999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHh-------------------CCHHHHHHHHHH
Q 035707 477 KGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQ-------------------GRLKNAIETYVN 537 (713)
Q Consensus 477 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~-------------------g~~~~A~~~~~~ 537 (713)
.++..+|.++...|++++|+..++++++..| ++..++..+|.+|... +.+++|+..|++
T Consensus 248 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 325 (472)
T 4g1t_A 248 DVLRSAAKFYRRKDEPDKAIELLKKALEYIP--NNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKK 325 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHhCC--ChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999999999999999999999999 7899999999887543 346778888888
Q ss_pred HHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh---HHHHHHHH-HH
Q 035707 538 LLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSAS---GWHSTGLL-YE 613 (713)
Q Consensus 538 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~lg~~-~~ 613 (713)
++..+|.. ..++..+|.+|...|++++|+.+|++++.+.|.+.. ++..+|.+ +.
T Consensus 326 a~~~~~~~----------------------~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~ 383 (472)
T 4g1t_A 326 ADEANDNL----------------------FRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLY 383 (472)
T ss_dssp HHHHCTTT----------------------CCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred HhhcCCch----------------------hhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 88886654 677889999999999999999999999999887643 45666654 45
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 035707 614 AKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEA 693 (713)
Q Consensus 614 ~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A 693 (713)
..|++++|+..|++++.+.|++......+ . .+...+++++..+|+++.+|.+||.+|...|+ +++|
T Consensus 384 ~~~~~~~Ai~~y~kal~i~~~~~~~~~~~----------~--~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~--~~~A 449 (472)
T 4g1t_A 384 QMKCEDKAIHHFIEGVKINQKSREKEKMK----------D--KLQKIAKMRLSKNGADSEALHVLAFLQELNEK--MQQA 449 (472)
T ss_dssp TSSCHHHHHHHHHHHHHSCCCCHHHHHHH----------H--HHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHH--CC--
T ss_pred HCCCHHHHHHHHHHHHhcCcccHHHHHHH----------H--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHH
Confidence 78999999999999999999986543222 2 56777889999999999999999999999999 9999
Q ss_pred HHHHHHHHccccCCCCCC
Q 035707 694 VECFEAAALLEESAPVEP 711 (713)
Q Consensus 694 ~~~~~~a~~l~p~~~~~~ 711 (713)
+++|++|+++.|.+|.++
T Consensus 450 ~~~y~kALe~~~~~p~a~ 467 (472)
T 4g1t_A 450 DEDSERGLESGSLIPSAS 467 (472)
T ss_dssp ------------------
T ss_pred HHHHHHHHhcCCCCCcHh
Confidence 999999999999998764
No 14
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.98 E-value=6.1e-30 Score=278.44 Aligned_cols=396 Identities=10% Similarity=-0.047 Sum_probs=293.1
Q ss_pred HHHHHhhhhhhccCchHHHHHHHHHHHHHHHHhcCCCCCCCCCcccchHHHHHHHHHHhHHHHHhcCChhHHHHHHHHHh
Q 035707 152 EAIFLKTKSLQGLGRFEEACQSCKVILDTVEHALPEGLPGNHSIDCKLQETLNKAVELLPELYKLAGDPDETILSYRRAL 231 (713)
Q Consensus 152 e~~~~~~~~~~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~~~~al 231 (713)
..+..+|.++..+|++++|++.|++++++.+...+... ......++..+|.+|...|++++|+..|++++
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~----------~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~ 121 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQA----------EIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVK 121 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGC----------TTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCcccc----------chHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 35667899999999999999999999998765432110 01123456779999999999999999999998
Q ss_pred cccCCCChhHHHHHHHHHHHHHhhcCCCCCCCcccccccccccCCchhHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHH
Q 035707 232 LYYWNLDIETTARIEKKFAVFLLYSGTDASPPNLRLQMELSFVPRNNIEEAVLLLLILLKKIVLGKIEWDPSIIDHLSFA 311 (713)
Q Consensus 232 ~~~~~~~~~~~~~i~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~eeA~~ll~~~~~~~~l~~~~~~~~~~~~l~~a 311 (713)
...+.. .. + ..+..+.++..++.+
T Consensus 122 ~i~~~~--------------------~~--~----------------------------------~~~~~~~~~~~~g~~ 145 (472)
T 4g1t_A 122 HVCEKF--------------------SS--P----------------------------------YRIESPELDCEEGWT 145 (472)
T ss_dssp HHHHHS--------------------CC--S----------------------------------SCCCCHHHHHHHHHH
T ss_pred HHhHhc--------------------cc--c----------------------------------cchhhHHHHHHHHHH
Confidence 752110 00 0 011234555666666
Q ss_pred HHhc--CcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHH---hcCCChHHHHHHHHHHHHhh
Q 035707 312 LSVS--GELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICA---ENKVCIEEGITYARKALSML 386 (713)
Q Consensus 312 ~~~~--g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~---~~g~~~~~A~~~~~~al~~~ 386 (713)
+... ++++.|.+.|++++. .+|+++.++..++.++. ..++.. +|++.++++++ .
T Consensus 146 ~~~~~~~~y~~A~~~~~kal~-------------------~~p~~~~~~~~~~~~~~~l~~~~~~~-~al~~~~~al~-l 204 (472)
T 4g1t_A 146 RLKCGGNQNERAKVCFEKALE-------------------KKPKNPEFTSGLAIASYRLDNWPPSQ-NAIDPLRQAIR-L 204 (472)
T ss_dssp HHHHCTTHHHHHHHHHHHHHH-------------------HSTTCHHHHHHHHHHHHHHHHSCCCC-CTHHHHHHHHH-H
T ss_pred HHHHccccHHHHHHHHHHHHH-------------------hCCCCHHHHHHHHHHHHHhcCchHHH-HHHHHHHHHhh-c
Confidence 6654 478999999999876 36888888887777654 457778 99999999999 8
Q ss_pred hccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 035707 387 QGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKK 466 (713)
Q Consensus 387 ~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 466 (713)
+|.+. .++..+|..+...+ ...+++++|+..|++++ ..+|.++.++..+|.+|...|++++|+..|++
T Consensus 205 ~p~~~----~~~~~l~~~~~~~~-------~~~~~~~~a~~~~~~al-~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 272 (472)
T 4g1t_A 205 NPDNQ----YLKVLLALKLHKMR-------EEGEEEGEGEKLVEEAL-EKAPGVTDVLRSAAKFYRRKDEPDKAIELLKK 272 (472)
T ss_dssp CSSCH----HHHHHHHHHHHHCC-------------CHHHHHHHHHH-HHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCcch----HHHHHHHHHHHHHH-------hhhhHHHHHHHHHHHHH-HhCccHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 99988 88888887774433 34678899999999999 99999999999999999999999999999999
Q ss_pred HHhhhcCCchHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCC
Q 035707 467 LLNLEARSNVKGYLLLARVLSAQ-------------------KQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGR 527 (713)
Q Consensus 467 ~l~~~p~~~~~~~~~la~~~~~~-------------------g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~ 527 (713)
+++.+|++. .++..+|.++... +.+++|+..++++++.+| ....++..+|.++...|+
T Consensus 273 al~~~p~~~-~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 273 ALEYIPNNA-YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND--NLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHSTTCH-HHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT--TTCCCHHHHHHHHHHTTC
T ss_pred HHHhCCChH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC--chhhhhhhHHHHHHHhcc
Confidence 999999998 9999999887653 347889999999999998 677789999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHhcCCCChhHHH
Q 035707 528 LKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANV-YTSLSQWRDAEVCLSKSKAINPYSASGWH 606 (713)
Q Consensus 528 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 606 (713)
+++|+..|++++...|.+ .....++..+|.+ +...|++++|+..|++++++.|.+.....
T Consensus 350 ~~~A~~~~~kaL~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~ 410 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTP-------------------VAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK 410 (472)
T ss_dssp HHHHHHHHHHHHHSCCCH-------------------HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHHhcCCCC-------------------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH
Confidence 999999999999876543 1223456667755 45789999999999999999998755332
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 035707 607 STGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGL 680 (713)
Q Consensus 607 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~ 680 (713)
....+...+++++..+|+++.++..+|.+|...|+++ +|+.+|++++++.|.+|.++..+|.
T Consensus 411 ----------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~--~A~~~y~kALe~~~~~p~a~~~~G~ 472 (472)
T 4g1t_A 411 ----------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQ--QADEDSERGLESGSLIPSASSWNGE 472 (472)
T ss_dssp ----------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------------------
T ss_pred ----------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhcCCCCCcHhhcCCC
Confidence 2345567788999999999999999999999999999 9999999999999999999888774
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.97 E-value=8.7e-30 Score=262.75 Aligned_cols=292 Identities=12% Similarity=0.003 Sum_probs=274.8
Q ss_pred CCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHH
Q 035707 351 NSDCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALE 430 (713)
Q Consensus 351 ~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 430 (713)
.|+++..++..|..++..|++. +|+.+++++++ .+|.+. .++..++.++ ...|++++|+..++
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~-~A~~~~~~~l~-~~p~~~----~~~~~~~~~~-----------~~~~~~~~A~~~~~ 80 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFK-MCYKLTSVVME-KDPFHA----SCLPVHIGTL-----------VELNKANELFYLSH 80 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHH-HHHHHHHHHHH-HCTTCT----TTHHHHHHHH-----------HHHTCHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHH-HHHHHHHHHHH-cCCCCh----hhHHHHHHHH-----------HHhhhHHHHHHHHH
Confidence 4677888999999999999999 99999999999 788888 8888899999 78899999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC
Q 035707 431 TAEKTMRERDPYIIYHLCLENAEQR-KLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKW 509 (713)
Q Consensus 431 ~al~~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 509 (713)
+++ ..+|.++.+++.+|.++...| ++++|+.+|++++..+|.+. .+|..+|.++...|++++|+..++++++..|
T Consensus 81 ~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-- 156 (330)
T 3hym_B 81 KLV-DLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYG-PAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-- 156 (330)
T ss_dssp HHH-HHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCT-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT--
T ss_pred HHH-HhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhcc--
Confidence 999 999999999999999999999 99999999999999999999 9999999999999999999999999999998
Q ss_pred CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHH
Q 035707 510 DQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEV 589 (713)
Q Consensus 510 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 589 (713)
.+...+..+|.++...|++++|+..+++++...|.+ +.++..+|.++...|++++|+.
T Consensus 157 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~----------------------~~~~~~l~~~~~~~~~~~~A~~ 214 (330)
T 3hym_B 157 GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED----------------------PFVMHEVGVVAFQNGEWKTAEK 214 (330)
T ss_dssp TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC----------------------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC----------------------hHHHHHHHHHHHHcccHHHHHH
Confidence 667788889999999999999999999999987654 8899999999999999999999
Q ss_pred HHHHHHhcC---------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHH
Q 035707 590 CLSKSKAIN---------PYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCF 660 (713)
Q Consensus 590 ~~~~al~~~---------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~ 660 (713)
++++++... |..+.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+++ +|+.+
T Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~ 292 (330)
T 3hym_B 215 WFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFE--NAVDY 292 (330)
T ss_dssp HHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHH--HHHHH
T ss_pred HHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHH--HHHHH
Confidence 999999986 6667899999999999999999999999999999999999999999999999997 99999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHH-HHhCC
Q 035707 661 LTDALRLDRTNTTAWYNLGLLY-KTYAG 687 (713)
Q Consensus 661 ~~~al~~~p~~~~~~~~lg~~~-~~~g~ 687 (713)
|+++++++|+++.++..++.++ ...|+
T Consensus 293 ~~~al~~~p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 293 FHTALGLRRDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHTTTTTCSCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHccCCCchHHHHHHHHHHHHHhCc
Confidence 9999999999999999999998 45666
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.97 E-value=2.1e-29 Score=259.86 Aligned_cols=283 Identities=13% Similarity=0.061 Sum_probs=262.6
Q ss_pred HHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 035707 381 KALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVA 460 (713)
Q Consensus 381 ~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A 460 (713)
..+. ..+.+. ..+..+|..+ ...|++++|+..|++++ ..+|.++.++..++.++...|++++|
T Consensus 13 ~~~~-~~~~~~----~~~~~~a~~~-----------~~~g~~~~A~~~~~~~l-~~~p~~~~~~~~~~~~~~~~~~~~~A 75 (330)
T 3hym_B 13 ESVD-GLQENL----DVVVSLAERH-----------YYNCDFKMCYKLTSVVM-EKDPFHASCLPVHIGTLVELNKANEL 75 (330)
T ss_dssp --------CCC----TTHHHHHHHH-----------HHTTCHHHHHHHHHHHH-HHCTTCTTTHHHHHHHHHHHTCHHHH
T ss_pred HHHh-hchhhH----HHHHHHHHHH-----------HHcCCHHHHHHHHHHHH-HcCCCChhhHHHHHHHHHHhhhHHHH
Confidence 3344 345566 7788889999 78899999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCchHHHHHHHHHHHHcC-CHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 035707 461 LYYAKKLLNLEARSNVKGYLLLARVLSAQK-QFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLL 539 (713)
Q Consensus 461 ~~~~~~~l~~~p~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 539 (713)
+..++++++.+|.++ .+|..+|.++...| ++++|+..|++++...| .+..++..+|.++...|++++|+..|++++
T Consensus 76 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 152 (330)
T 3hym_B 76 FYLSHKLVDLYPSNP-VSWFAVGCYYLMVGHKNEHARRYLSKATTLEK--TYGPAWIAYGHSFAVESEHDQAMAAYFTAA 152 (330)
T ss_dssp HHHHHHHHHHCTTST-HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCT--TCTHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCCH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999999999999 99999999999999 99999999999999998 678899999999999999999999999999
Q ss_pred HHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHH
Q 035707 540 AVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQ 619 (713)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 619 (713)
...|.. ..++..+|.++...|++++|+.+++++++..|.++.++..+|.++...|+++
T Consensus 153 ~~~~~~----------------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~ 210 (330)
T 3hym_B 153 QLMKGC----------------------HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWK 210 (330)
T ss_dssp HHTTTC----------------------SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHH
T ss_pred Hhcccc----------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHH
Confidence 997654 6778889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC---------CCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCH
Q 035707 620 EALVSFRKALDAE---------PNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASA 690 (713)
Q Consensus 620 eA~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 690 (713)
+|+..|++++... |..+.++..+|.++...|+++ +|+.+++++++.+|+++.+|..+|.++...|+ +
T Consensus 211 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~--~ 286 (330)
T 3hym_B 211 TAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA--EALDYHRQALVLIPQNASTYSAIGYIHSLMGN--F 286 (330)
T ss_dssp HHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC--H
T ss_pred HHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHhhCccchHHHHHHHHHHHHhcc--H
Confidence 9999999999976 677889999999999999997 99999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHccccCCCC
Q 035707 691 LEAVECFEAAALLEESAPV 709 (713)
Q Consensus 691 ~~A~~~~~~a~~l~p~~~~ 709 (713)
++|..+|+++++++|+++.
T Consensus 287 ~~A~~~~~~al~~~p~~~~ 305 (330)
T 3hym_B 287 ENAVDYFHTALGLRRDDTF 305 (330)
T ss_dssp HHHHHHHHTTTTTCSCCHH
T ss_pred HHHHHHHHHHHccCCCchH
Confidence 9999999999999998763
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.97 E-value=5e-30 Score=269.22 Aligned_cols=299 Identities=13% Similarity=0.128 Sum_probs=263.9
Q ss_pred HHHhcCCChHHHHH-HHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHH
Q 035707 364 ICAENKVCIEEGIT-YARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPY 442 (713)
Q Consensus 364 ~~~~~g~~~~~A~~-~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~ 442 (713)
.+...|++. +|+. .|++++. ..|.++......++.+|.++ ...|++++|+..|++++ ..+|.++.
T Consensus 34 ~~~~~~~~~-~a~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~-----------~~~g~~~~A~~~~~~al-~~~p~~~~ 99 (368)
T 1fch_A 34 AHPWLSDYD-DLTSATYDKGYQ-FEEENPLRDHPQPFEEGLRR-----------LQEGDLPNAVLLFEAAV-QQDPKHME 99 (368)
T ss_dssp -------------CHHHHCCCC-CCSSCTTTTCSSHHHHHHHH-----------HHTTCHHHHHHHHHHHH-HSCTTCHH
T ss_pred hhHHHHHHH-HHHhhhhhHHHh-cCCCCcccchHHHHHHHHHH-----------HHCCCHHHHHHHHHHHH-HhCCCCHH
Confidence 345568899 9999 9999998 67776544457788999999 88999999999999999 99999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHH------
Q 035707 443 IIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLR------ 516 (713)
Q Consensus 443 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~------ 516 (713)
+++.+|.++...|++++|+..|+++++.+|.+. .++..+|.++...|++++|+..+++++...|. +...+.
T Consensus 100 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~ 176 (368)
T 1fch_A 100 AWQYLGTTQAENEQELLAISALRRCLELKPDNQ-TALMALAVSFTNESLQRQACEILRDWLRYTPA--YAHLVTPAEEGA 176 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT--TGGGCC------
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--cHHHHHHHHHHh
Confidence 999999999999999999999999999999998 99999999999999999999999999999884 333332
Q ss_pred ----------HHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHH
Q 035707 517 ----------TKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRD 586 (713)
Q Consensus 517 ----------~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 586 (713)
.++.++ ..|++++|+..|++++...|.. ..+.++..+|.++...|++++
T Consensus 177 ~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~--------------------~~~~~~~~l~~~~~~~g~~~~ 235 (368)
T 1fch_A 177 GGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTS--------------------IDPDVQCGLGVLFNLSGEYDK 235 (368)
T ss_dssp ---------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTS--------------------CCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCc--------------------ccHHHHHHHHHHHHHcCCHHH
Confidence 466666 9999999999999999997751 138899999999999999999
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 035707 587 AEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALR 666 (713)
Q Consensus 587 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~ 666 (713)
|+.+|++++.++|.++.++..+|.++...|++++|+..|++++.++|+++.++..+|.++...|+++ +|+.+|+++++
T Consensus 236 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~al~ 313 (368)
T 1fch_A 236 AVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR--EAVEHFLEALN 313 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH--HHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999997 99999999999
Q ss_pred hCCCC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccc
Q 035707 667 LDRTN-----------TTAWYNLGLLYKTYAGASALEAVECFEAAALLE 704 (713)
Q Consensus 667 ~~p~~-----------~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~ 704 (713)
+.|++ +.+|..+|.++...|+ +++|..+++++++..
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~l~~~ 360 (368)
T 1fch_A 314 MQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ--SDAYGAADARDLSTL 360 (368)
T ss_dssp HHHTC------CCCCCHHHHHHHHHHHHHHTC--GGGHHHHHTTCHHHH
T ss_pred hCCCCCCccccccchhhHHHHHHHHHHHHhCC--hHhHHHhHHHHHHHH
Confidence 99988 8999999999999999 999999999887653
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.96 E-value=1.6e-28 Score=257.71 Aligned_cols=278 Identities=15% Similarity=0.135 Sum_probs=246.7
Q ss_pred hccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 035707 387 QGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKK 466 (713)
Q Consensus 387 ~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 466 (713)
.+.++......++.+|.++ .+.|++++|+..|++++ ..+|+++.+++.+|.++...|++++|+..|++
T Consensus 57 ~~~~~~~~~~~~~~~~~~~-----------~~~g~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 124 (365)
T 4eqf_A 57 HTENPFKDWPGAFEEGLKR-----------LKEGDLPVTILFMEAAI-LQDPGDAEAWQFLGITQAENENEQAAIVALQR 124 (365)
T ss_dssp CSSCTTTTCTTHHHHHHHH-----------HHHTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccCCcccchhHHHHHHHHH-----------HHCCCHHHHHHHHHHHH-HhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3444423346789999999 89999999999999999 99999999999999999999999999999999
Q ss_pred HHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHH----------HHHHHHHHHhCCHHHHHHHHH
Q 035707 467 LLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELL----------RTKAKLQIAQGRLKNAIETYV 536 (713)
Q Consensus 467 ~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------~~la~~~~~~g~~~~A~~~~~ 536 (713)
+++.+|.+. .++..+|.++...|++++|+..|+++++..| .+...+ ..+|.++...|++++|+..|+
T Consensus 125 al~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 201 (365)
T 4eqf_A 125 CLELQPNNL-KALMALAVSYTNTSHQQDACEALKNWIKQNP--KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYL 201 (365)
T ss_dssp HHHHCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH--HHHCC-------------------CCHHHHHHHHHHH
T ss_pred HHhcCCCCH-HHHHHHHHHHHccccHHHHHHHHHHHHHhCc--cchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999999998 9999999999999999999999999999987 444434 345999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC
Q 035707 537 NLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKG 616 (713)
Q Consensus 537 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 616 (713)
+++...|.. .++.++..+|.+|...|++++|+.+|+++++..|.++.+|..+|.++...|
T Consensus 202 ~al~~~p~~--------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 261 (365)
T 4eqf_A 202 EAAHQNGDM--------------------IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGD 261 (365)
T ss_dssp HHHHHSCSS--------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHhCcCc--------------------cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 999997641 137899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHH
Q 035707 617 LQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRT------------NTTAWYNLGLLYKT 684 (713)
Q Consensus 617 ~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~------------~~~~~~~lg~~~~~ 684 (713)
++++|+..|+++++++|+++.++..+|.++...|+++ +|+.+|++++++.|+ +..+|..++.++..
T Consensus 262 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~--~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 339 (365)
T 4eqf_A 262 RSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR--EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSL 339 (365)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH--HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH--HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998 999999999999877 36789999999999
Q ss_pred hCCCCHHHHHHHHHHHHcc
Q 035707 685 YAGASALEAVECFEAAALL 703 (713)
Q Consensus 685 ~g~~~~~~A~~~~~~a~~l 703 (713)
.|+ .+.|..+.++.+..
T Consensus 340 ~g~--~~~a~~~~~~~l~~ 356 (365)
T 4eqf_A 340 MDQ--PELFQAANLGDLDV 356 (365)
T ss_dssp HTC--HHHHHHHHTTCCGG
T ss_pred cCc--HHHHHHHHHhhHHH
Confidence 999 99999888776553
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.96 E-value=1.3e-27 Score=250.64 Aligned_cols=297 Identities=12% Similarity=0.071 Sum_probs=259.1
Q ss_pred HHHhcCcHHHHHH-HHHhhCCCCCCchhhHHHHHHHhhcccCCC-ChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhc
Q 035707 311 ALSVSGELWTLAH-QVEELLPGVMGNKKRYCTLALCYLGEENSD-CNLELLVASKICAENKVCIEEGITYARKALSMLQG 388 (713)
Q Consensus 311 a~~~~g~~~~a~~-~~e~~l~~~~~~~~~~~~la~~~~~~~~p~-~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~ 388 (713)
++...|+++.+.+ .|++++...+. +|. +...++.+|..+...|++. +|+.+|+++++ ..|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~----------------~~~~~~~~~~~~~~~~~~~g~~~-~A~~~~~~al~-~~p 95 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEE----------------NPLRDHPQPFEEGLRRLQEGDLP-NAVLLFEAAVQ-QDP 95 (368)
T ss_dssp ------------CHHHHCCCCCCSS----------------CTTTTCSSHHHHHHHHHHTTCHH-HHHHHHHHHHH-SCT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCC----------------CcccchHHHHHHHHHHHHCCCHH-HHHHHHHHHHH-hCC
Confidence 4556688999998 99988765332 121 3567889999999999999 99999999999 788
Q ss_pred cCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 035707 389 KCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLL 468 (713)
Q Consensus 389 ~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 468 (713)
.+. .++..+|.++ ...|++++|+..|++++ ..+|+++.+++.+|.++...|++++|+..+++++
T Consensus 96 ~~~----~~~~~l~~~~-----------~~~g~~~~A~~~~~~al-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 159 (368)
T 1fch_A 96 KHM----EAWQYLGTTQ-----------AENEQELLAISALRRCL-ELKPDNQTALMALAVSFTNESLQRQACEILRDWL 159 (368)
T ss_dssp TCH----HHHHHHHHHH-----------HHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCH----HHHHHHHHHH-----------HHCcCHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888 9999999999 88999999999999999 9999999999999999999999999999999999
Q ss_pred hhhcCCchHHHH----------------HHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHH
Q 035707 469 NLEARSNVKGYL----------------LLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAI 532 (713)
Q Consensus 469 ~~~p~~~~~~~~----------------~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~ 532 (713)
...|.+. ..+. .++.++ ..|++++|+..++++++..|...+..++..+|.++...|++++|+
T Consensus 160 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 237 (368)
T 1fch_A 160 RYTPAYA-HLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAV 237 (368)
T ss_dssp HTSTTTG-GGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhCcCcH-HHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 9999887 5554 466666 999999999999999999983227899999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 035707 533 ETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLY 612 (713)
Q Consensus 533 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 612 (713)
..|++++...|.+ +.++..+|.++...|++++|+.+|+++++++|.++.++..+|.++
T Consensus 238 ~~~~~al~~~~~~----------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 295 (368)
T 1fch_A 238 DCFTAALSVRPND----------------------YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC 295 (368)
T ss_dssp HHHHHHHHHCTTC----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCC----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 9999999997654 889999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCC-----------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 035707 613 EAKGLQQEALVSFRKALDAEPNH-----------VPSLVSIARVLRQIGGESMATIRCFLTDALRL 667 (713)
Q Consensus 613 ~~~g~~~eA~~~~~~al~~~p~~-----------~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~ 667 (713)
...|++++|+..|++++.+.|++ ..+|..+|.++...|+++ +|..+++++++.
T Consensus 296 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~l~~ 359 (368)
T 1fch_A 296 INLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD--AYGAADARDLST 359 (368)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG--GHHHHHTTCHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChH--hHHHhHHHHHHH
Confidence 99999999999999999999888 899999999999999998 899888776653
No 20
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.96 E-value=9.6e-28 Score=247.04 Aligned_cols=278 Identities=15% Similarity=0.114 Sum_probs=253.7
Q ss_pred cCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 035707 389 KCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLL 468 (713)
Q Consensus 389 ~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 468 (713)
.++......++.+|..+ ...|++++|+..|++++ ..+|+++.+++.+|.++...|++++|+..+++++
T Consensus 15 ~~~~~~~~~~~~~a~~~-----------~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 82 (327)
T 3cv0_A 15 NNPYMYHENPMEEGLSM-----------LKLANLAEAALAFEAVC-QAAPEREEAWRSLGLTQAENEKDGLAIIALNHAR 82 (327)
T ss_dssp SCGGGGSSCHHHHHHHH-----------HHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHHHH-----------HHhccHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333346788899999 88999999999999999 9999999999999999999999999999999999
Q ss_pred hhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHH--------------HH-HHHHhCCHHHHHH
Q 035707 469 NLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTK--------------AK-LQIAQGRLKNAIE 533 (713)
Q Consensus 469 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l--------------a~-~~~~~g~~~~A~~ 533 (713)
+.+|.+. .++..+|.++...|++++|+..+++++...| .....+..+ +. ++...|++++|+.
T Consensus 83 ~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 159 (327)
T 3cv0_A 83 MLDPKDI-AVHAALAVSHTNEHNANAALASLRAWLLSQP--QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRT 159 (327)
T ss_dssp HHCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHTST--TTTTC--------------------CCTTSHHHHHHHHH
T ss_pred hcCcCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHH
Confidence 9999998 9999999999999999999999999999988 444445444 55 6888999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 035707 534 TYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYE 613 (713)
Q Consensus 534 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 613 (713)
.+++++...|.+ ..++..+|.++...|++++|+.++++++..+|.++.++..+|.++.
T Consensus 160 ~~~~~~~~~~~~----------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 217 (327)
T 3cv0_A 160 LLHAALEMNPND----------------------AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLA 217 (327)
T ss_dssp HHHHHHHHSTTC----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCC----------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 999999987654 8899999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC------------CHHHHHHHHHH
Q 035707 614 AKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRT------------NTTAWYNLGLL 681 (713)
Q Consensus 614 ~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~------------~~~~~~~lg~~ 681 (713)
..|++++|+..|+++++..|++..++..+|.++...|+++ +|+.+++++++..|+ ++.+|..+|.+
T Consensus 218 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 295 (327)
T 3cv0_A 218 NGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYD--LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRML 295 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHH--HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999997 999999999999999 78999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHccccCC
Q 035707 682 YKTYAGASALEAVECFEAAALLEESA 707 (713)
Q Consensus 682 ~~~~g~~~~~~A~~~~~~a~~l~p~~ 707 (713)
+...|+ +++|..+++++++..|++
T Consensus 296 ~~~~g~--~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 296 LNVMNR--PDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp HHHTTC--HHHHHHHTTCCSHHHHHH
T ss_pred HHhcCC--HHHHHHHHHHHHHhcchh
Confidence 999999 999999999998877654
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.96 E-value=4.8e-25 Score=240.78 Aligned_cols=317 Identities=13% Similarity=0.009 Sum_probs=261.6
Q ss_pred HHHHHHHHHHHHh----cCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHh----cCCChH
Q 035707 302 PSIIDHLSFALSV----SGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICAE----NKVCIE 373 (713)
Q Consensus 302 ~~~~~~l~~a~~~----~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~----~g~~~~ 373 (713)
+..+..|+..|.. .++++.|..+|+++.. ++++.+++.+|.++.. .+++.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~---------------------~~~~~a~~~Lg~~y~~g~g~~~d~~- 168 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE---------------------QGRDSGQQSMGDAYFEGDGVTRDYV- 168 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH---------------------TTCHHHHHHHHHHHHHTSSSCCCHH-
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH---------------------CCCHHHHHHHHHHHHcCCCCCCCHH-
Confidence 3444555666655 6677777777777643 4667888888888877 77888
Q ss_pred HHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHH----HhcHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 035707 374 EGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKR----ILKQSQALVALETAEKTMRERDPYIIYHLCL 449 (713)
Q Consensus 374 ~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~~p~~~~~~~~la~ 449 (713)
+|+.+|+++++ . .+. .+++.+|.+| .. .+++++|+.+|+++. .. .++.+++.+|.
T Consensus 169 ~A~~~~~~a~~-~--~~~----~a~~~Lg~~y-----------~~g~g~~~~~~~A~~~~~~a~-~~--~~~~a~~~lg~ 227 (490)
T 2xm6_A 169 MAREWYSKAAE-Q--GNV----WSCNQLGYMY-----------SRGLGVERNDAISAQWYRKSA-TS--GDELGQLHLAD 227 (490)
T ss_dssp HHHHHHHHHHH-T--TCH----HHHHHHHHHH-----------HHTSSSCCCHHHHHHHHHHHH-HT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHH-C--CCH----HHHHHHHHHH-----------hcCCCCCcCHHHHHHHHHHHH-HC--CCHHHHHHHHH
Confidence 99999999987 3 345 8999999999 55 688899999999998 54 57889999999
Q ss_pred HHHH----cCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHH----cCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHH
Q 035707 450 ENAE----QRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSA----QKQFADAESVINDSLDQTGKWDQGELLRTKAKL 521 (713)
Q Consensus 450 ~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~ 521 (713)
+|.. .+++++|+.+|+++++. .++ .+++.+|.++.. .+++++|+.+|+++.+. .+..+++.+|.+
T Consensus 228 ~y~~g~g~~~~~~~A~~~~~~a~~~--~~~-~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~----~~~~a~~~Lg~~ 300 (490)
T 2xm6_A 228 MYYFGIGVTQDYTQSRVLFSQSAEQ--GNS-IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ----GNSDGQYYLAHL 300 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHTT--TCH-HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT----TCHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC--CCH-HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHH
Confidence 9997 89999999999999875 445 889999999998 89999999999999876 357788999999
Q ss_pred HHHh-----CCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCC---CHHHHHHHHHH
Q 035707 522 QIAQ-----GRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLS---QWRDAEVCLSK 593 (713)
Q Consensus 522 ~~~~-----g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~ 593 (713)
+... +++++|+.+|+++.+..+ +.+++.+|.+|...| ++++|+.+|++
T Consensus 301 y~~~~~g~~~~~~~A~~~~~~a~~~~~------------------------~~a~~~lg~~y~~~g~~~~~~~A~~~~~~ 356 (490)
T 2xm6_A 301 YDKGAEGVAKNREQAISWYTKSAEQGD------------------------ATAQANLGAIYFRLGSEEEHKKAVEWFRK 356 (490)
T ss_dssp HHHCBTTBCCCHHHHHHHHHHHHHTTC------------------------HHHHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred HHcCCCCCcCCHHHHHHHHHHHHhcCC------------------------HHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence 9988 899999999999887532 678999999999877 88999999999
Q ss_pred HHhcCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCCChHHHHHHHHHHH
Q 035707 594 SKAINPYSASGWHSTGLLYEA----KGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQ----IGGESMATIRCFLTDAL 665 (713)
Q Consensus 594 al~~~p~~~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~l~~A~~~~~~al 665 (713)
+++. .++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|.. .++++ +|+.+|++++
T Consensus 357 a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~--~A~~~~~~A~ 430 (490)
T 2xm6_A 357 AAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYV--QAWAWFDTAS 430 (490)
T ss_dssp HHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH--HHHHHHHHHH
T ss_pred HHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHH--HHHHHHHHHH
Confidence 9987 578999999999998 89999999999999885 468899999999998 77776 9999999999
Q ss_pred hhCCC---CHHHHHHHHHHHHHhCCCCHH--HHHHHHHHH
Q 035707 666 RLDRT---NTTAWYNLGLLYKTYAGASAL--EAVECFEAA 700 (713)
Q Consensus 666 ~~~p~---~~~~~~~lg~~~~~~g~~~~~--~A~~~~~~a 700 (713)
+.+|+ ++.++.++|.++..... .. .|..+|+++
T Consensus 431 ~~~~~~~~~~~a~~~l~~~~~~~~~--~a~~~a~~~~~~~ 468 (490)
T 2xm6_A 431 TNDMNLFGTENRNITEKKLTAKQLQ--QAELLSQQYIEKY 468 (490)
T ss_dssp HHHCCHHHHHHHHHHHTTSCHHHHH--HHHHHHHHHHHHH
T ss_pred HCCCCCcCCHHHHHHHHhcCHhHHH--HHHHHHHHHHHHH
Confidence 99844 88899999888765433 22 255555554
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.95 E-value=4.8e-27 Score=246.34 Aligned_cols=271 Identities=13% Similarity=0.082 Sum_probs=242.0
Q ss_pred CChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHH
Q 035707 353 DCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETA 432 (713)
Q Consensus 353 ~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 432 (713)
.+...++.+|..+...|++. +|+.+|+++++ ..|.+. .++..+|.++ ...|++++|+..|+++
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~-~A~~~~~~al~-~~p~~~----~~~~~lg~~~-----------~~~g~~~~A~~~~~~a 125 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLP-VTILFMEAAIL-QDPGDA----EAWQFLGITQ-----------AENENEQAAIVALQRC 125 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHH-HHHHHHHHHHH-HCTTCH----HHHHHHHHHH-----------HHTTCHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHH-HHHHHHHHHHH-hCcCCH----HHHHHHHHHH-----------HHCCCHHHHHHHHHHH
Confidence 35667999999999999999 99999999999 889888 9999999999 8899999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHH----------HHHHHHHcCCHHHHHHHHHHH
Q 035707 433 EKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLL----------LARVLSAQKQFADAESVINDS 502 (713)
Q Consensus 433 l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~----------la~~~~~~g~~~~A~~~~~~a 502 (713)
+ ..+|+++.+++.+|.+|...|++++|+..|+++++..|.+. ..+.. +|.++...|++++|+..|+++
T Consensus 126 l-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 203 (365)
T 4eqf_A 126 L-ELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYK-YLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEA 203 (365)
T ss_dssp H-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHH-CC-------------------CCHHHHHHHHHHHHH
T ss_pred H-hcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccch-HHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 9 99999999999999999999999999999999999998765 55544 499999999999999999999
Q ss_pred hhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCC
Q 035707 503 LDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLS 582 (713)
Q Consensus 503 l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 582 (713)
+...|...+..++..+|.++...|++++|+..|+++++..|.+ +.+|..+|.+|...|
T Consensus 204 l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~l~~~~~~~g 261 (365)
T 4eqf_A 204 AHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED----------------------YSLWNRLGATLANGD 261 (365)
T ss_dssp HHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----------------------HHHHHHHHHHHHHTT
T ss_pred HHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHcC
Confidence 9999842278999999999999999999999999999997654 889999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHhc
Q 035707 583 QWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPN------------HVPSLVSIARVLRQIG 650 (713)
Q Consensus 583 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~------------~~~~~~~la~~~~~~g 650 (713)
++++|+.+|+++++++|.++.++..+|.++...|++++|+..|++++++.|+ +..+|..++.++...|
T Consensus 262 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 341 (365)
T 4eqf_A 262 RSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMD 341 (365)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999876 3678999999999999
Q ss_pred CCChHHHHHHHHHHHh
Q 035707 651 GESMATIRCFLTDALR 666 (713)
Q Consensus 651 ~~~l~~A~~~~~~al~ 666 (713)
+.+ .+.....+.+.
T Consensus 342 ~~~--~a~~~~~~~l~ 355 (365)
T 4eqf_A 342 QPE--LFQAANLGDLD 355 (365)
T ss_dssp CHH--HHHHHHTTCCG
T ss_pred cHH--HHHHHHHhhHH
Confidence 987 77776655443
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.95 E-value=2.1e-24 Score=235.75 Aligned_cols=321 Identities=14% Similarity=0.060 Sum_probs=279.6
Q ss_pred HHHHHHHHHHHHh----cCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHh----cCCChH
Q 035707 302 PSIIDHLSFALSV----SGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICAE----NKVCIE 373 (713)
Q Consensus 302 ~~~~~~l~~a~~~----~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~----~g~~~~ 373 (713)
+.++..|+..|.. .++++.|.++|+++.. +.++.+++.+|.++.. .+++.
T Consensus 75 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~---------------------~~~~~a~~~Lg~~y~~g~g~~~~~~- 132 (490)
T 2xm6_A 75 TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL---------------------KGLPQAQQNLGVMYHEGNGVKVDKA- 132 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH---------------------TTCHHHHHHHHHHHHHTSSSCCCHH-
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH---------------------CCCHHHHHHHHHHHHcCCCCCCCHH-
Confidence 3344556666666 6778888888887743 4677888999999888 78899
Q ss_pred HHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHH----HhcHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 035707 374 EGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKR----ILKQSQALVALETAEKTMRERDPYIIYHLCL 449 (713)
Q Consensus 374 ~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~~p~~~~~~~~la~ 449 (713)
+|+.+|+++.+ . .++ .+++.||.+| .. .+++++|+..|++++ .. .++.+++.+|.
T Consensus 133 ~A~~~~~~a~~-~--~~~----~a~~~Lg~~y-----------~~g~g~~~d~~~A~~~~~~a~-~~--~~~~a~~~Lg~ 191 (490)
T 2xm6_A 133 ESVKWFRLAAE-Q--GRD----SGQQSMGDAY-----------FEGDGVTRDYVMAREWYSKAA-EQ--GNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHHH-T--TCH----HHHHHHHHHH-----------HHTSSSCCCHHHHHHHHHHHH-HT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHH-C--CCH----HHHHHHHHHH-----------HcCCCCCCCHHHHHHHHHHHH-HC--CCHHHHHHHHH
Confidence 99999999987 2 455 8999999999 44 678999999999999 65 58999999999
Q ss_pred HHHH----cCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHH----cCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHH
Q 035707 450 ENAE----QRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSA----QKQFADAESVINDSLDQTGKWDQGELLRTKAKL 521 (713)
Q Consensus 450 ~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~ 521 (713)
+|.. .+++++|+.+|+++.+. +++ .++..+|.++.. .+++++|+.+|+++++.. +..+++.+|.+
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~--~~~-~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~ 264 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATS--GDE-LGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG----NSIAQFRLGYI 264 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT--TCH-HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT----CHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHC--CCH-HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHH
Confidence 9999 89999999999999875 456 899999999997 899999999999999863 57789999999
Q ss_pred HHH----hCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHC-----CCHHHHHHHHH
Q 035707 522 QIA----QGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSL-----SQWRDAEVCLS 592 (713)
Q Consensus 522 ~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~ 592 (713)
+.. .+++++|+.+|+++.+.. ++.+++.+|.+|... +++++|+.+|+
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~------------------------~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~ 320 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG------------------------NSDGQYYLAHLYDKGAEGVAKNREQAISWYT 320 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT------------------------CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC------------------------CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence 999 999999999999987642 277899999999998 99999999999
Q ss_pred HHHhcCCCChhHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCCChHHHHHHHHHHH
Q 035707 593 KSKAINPYSASGWHSTGLLYEAKG---LQQEALVSFRKALDAEPNHVPSLVSIARVLRQ----IGGESMATIRCFLTDAL 665 (713)
Q Consensus 593 ~al~~~p~~~~~~~~lg~~~~~~g---~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~l~~A~~~~~~al 665 (713)
++.+. .++.+++.+|.+|...| ++++|+.+|+++++. +++.+++.+|.+|.. .++++ +|+.+|++++
T Consensus 321 ~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~--~A~~~~~~A~ 394 (490)
T 2xm6_A 321 KSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQ--QAAIWMRKAA 394 (490)
T ss_dssp HHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH--HHHHHHHHHH
T ss_pred HHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHH--HHHHHHHHHH
Confidence 99986 46789999999999877 899999999999987 679999999999998 77776 9999999999
Q ss_pred hhCCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHccccC
Q 035707 666 RLDRTNTTAWYNLGLLYKT----YAGASALEAVECFEAAALLEES 706 (713)
Q Consensus 666 ~~~p~~~~~~~~lg~~~~~----~g~~~~~~A~~~~~~a~~l~p~ 706 (713)
+. .++.++++||.+|.. .++ +++|..+|+++++..|+
T Consensus 395 ~~--~~~~a~~~Lg~~y~~g~g~~~d--~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 395 EQ--GLSAAQVQLGEIYYYGLGVERD--YVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HT--TCHHHHHHHHHHHHHTSSSCCC--HHHHHHHHHHHHHHHCC
T ss_pred hC--CCHHHHHHHHHHHHcCCCCCCC--HHHHHHHHHHHHHCCCC
Confidence 86 468999999999999 899 99999999999999854
No 24
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.95 E-value=3.4e-27 Score=246.05 Aligned_cols=245 Identities=10% Similarity=0.092 Sum_probs=230.1
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCC-HHHHHHHHHHHhhccCCCC
Q 035707 432 AEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQ-FADAESVINDSLDQTGKWD 510 (713)
Q Consensus 432 al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~ 510 (713)
++ .++|++..++..+|.++...|++++|+..|++++.++|++. .+|+.+|.++..+|+ +++|+..|++++.++| .
T Consensus 89 ai-~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~-~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P--~ 164 (382)
T 2h6f_A 89 QI-IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANY-TVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP--K 164 (382)
T ss_dssp EE-CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT--T
T ss_pred hh-hCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCH-HHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC--C
Confidence 45 77788899999999999999999999999999999999999 999999999999997 9999999999999999 7
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHH
Q 035707 511 QGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVC 590 (713)
Q Consensus 511 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 590 (713)
+..+|+.+|.++...|++++|+..|++++.++|++ ..+|+.+|.++...|++++|+.+
T Consensus 165 ~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~----------------------~~a~~~lg~~~~~~g~~~eAl~~ 222 (382)
T 2h6f_A 165 NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN----------------------YHAWQHRQWVIQEFKLWDNELQY 222 (382)
T ss_dssp CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC----------------------HHHHHHHHHHHHHHTCCTTHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC----------------------HHHHHHHHHHHHHcCChHHHHHH
Confidence 89999999999999999999999999999998766 99999999999999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHH-cCCHHHH-----HHHHHHHHhcCCCCHHHHHHHHHHHHHhc--CCChHHHHHHHH
Q 035707 591 LSKSKAINPYSASGWHSTGLLYEA-KGLQQEA-----LVSFRKALDAEPNHVPSLVSIARVLRQIG--GESMATIRCFLT 662 (713)
Q Consensus 591 ~~~al~~~p~~~~~~~~lg~~~~~-~g~~~eA-----~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~l~~A~~~~~ 662 (713)
|+++++++|.+..+|+.+|.++.. .|.+++| +.+|++++.++|++..+|++++.++...| +++ +|+..+.
T Consensus 223 ~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~--~a~~~~~ 300 (382)
T 2h6f_A 223 VDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYP--NLLNQLL 300 (382)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCH--HHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchH--HHHHHHH
Confidence 999999999999999999999999 5665888 59999999999999999999999999988 455 9999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHH-HccccCC
Q 035707 663 DALRLDRTNTTAWYNLGLLYKTYA---------GASALEAVECFEAA-ALLEESA 707 (713)
Q Consensus 663 ~al~~~p~~~~~~~~lg~~~~~~g---------~~~~~~A~~~~~~a-~~l~p~~ 707 (713)
++ +.+|+++.++..+|.+|...| . +++|+.+|+++ ++++|..
T Consensus 301 ~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~--~~~A~~~~~~l~~~~DP~r 352 (382)
T 2h6f_A 301 DL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDI--LNKALELCEILAKEKDTIR 352 (382)
T ss_dssp HH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHH--HHHHHHHHHHHHHTTCGGG
T ss_pred Hh-ccCCCCHHHHHHHHHHHHHHhcccccchHHH--HHHHHHHHHHHHHHhCchh
Confidence 88 999999999999999999985 3 58999999999 8998864
No 25
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.95 E-value=8.2e-27 Score=243.12 Aligned_cols=258 Identities=10% Similarity=0.063 Sum_probs=238.8
Q ss_pred hhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHH
Q 035707 386 LQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRK-LDVALYYA 464 (713)
Q Consensus 386 ~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~ 464 (713)
..|.+. .++..+|.++ ...|++++|+..|++++ .++|++..+|+.+|.++...|+ +++|+..|
T Consensus 92 ~~p~~~----~a~~~lg~~~-----------~~~g~~~~Al~~~~~al-~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~ 155 (382)
T 2h6f_A 92 YSDKFR----DVYDYFRAVL-----------QRDERSERAFKLTRDAI-ELNAANYTVWHFRRVLLKSLQKDLHEEMNYI 155 (382)
T ss_dssp CCHHHH----HHHHHHHHHH-----------HHTCCCHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CChhhH----HHHHHHHHHH-----------HHCCChHHHHHHHHHHH-HhCccCHHHHHHHHHHHHHcccCHHHHHHHH
Confidence 455555 8999999999 77888899999999999 9999999999999999999997 99999999
Q ss_pred HHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 035707 465 KKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQF 544 (713)
Q Consensus 465 ~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 544 (713)
++++.++|++. .+|+.+|.++..+|++++|+..|+++++++| .+..+|+.+|.++...|++++|+..|+++++++|.
T Consensus 156 ~~al~l~P~~~-~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP--~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~ 232 (382)
T 2h6f_A 156 TAIIEEQPKNY-QVWHHRRVLVEWLRDPSQELEFIADILNQDA--KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR 232 (382)
T ss_dssp HHHHHHCTTCH-HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred HHHHHHCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCc--cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 99999999999 9999999999999999999999999999999 88999999999999999999999999999999876
Q ss_pred hhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHH-CCCHHHH-----HHHHHHHHhcCCCChhHHHHHHHHHHHcC--
Q 035707 545 RKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTS-LSQWRDA-----EVCLSKSKAINPYSASGWHSTGLLYEAKG-- 616 (713)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~p~~~~~~~~lg~~~~~~g-- 616 (713)
+ ..+|+.+|.++.. .|.+++| +.+|++++.++|++..+|+.+|.++...|
T Consensus 233 ~----------------------~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~ 290 (382)
T 2h6f_A 233 N----------------------NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLS 290 (382)
T ss_dssp C----------------------HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGG
T ss_pred C----------------------HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCcc
Confidence 6 8999999999999 5655888 59999999999999999999999999988
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-------ChHHHHHHHHHH-HhhCCCCHHHHHHHHHHHHHh
Q 035707 617 LQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGE-------SMATIRCFLTDA-LRLDRTNTTAWYNLGLLYKTY 685 (713)
Q Consensus 617 ~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-------~l~~A~~~~~~a-l~~~p~~~~~~~~lg~~~~~~ 685 (713)
++++|+..++++ +.+|+++.++..+|.+|..+|+. .+++|+.+|+++ ++++|.....|..++..+...
T Consensus 291 ~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 291 KYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp GCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 699999999998 99999999999999999998621 124999999999 999999999999999888753
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.95 E-value=2e-26 Score=237.17 Aligned_cols=271 Identities=11% Similarity=0.065 Sum_probs=249.7
Q ss_pred ChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHH
Q 035707 354 CNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAE 433 (713)
Q Consensus 354 ~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 433 (713)
+...++..|..+...|++. +|+.+++++++ ..|.+. .++..+|.++ ...|++++|+..|++++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~-~A~~~~~~~~~-~~~~~~----~~~~~l~~~~-----------~~~~~~~~A~~~~~~a~ 82 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLA-EAALAFEAVCQ-AAPERE----EAWRSLGLTQ-----------AENEKDGLAIIALNHAR 82 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHH-HHHHHHHHHHH-HCTTCH----HHHHHHHHHH-----------HHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHH-HHHHHHHHHHH-hCCCCH----HHHHHHHHHH-----------HHcCCHHHHHHHHHHHH
Confidence 4567789999999999999 99999999999 788888 9999999999 88999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHH--------------HH-HHHHcCCHHHHHHH
Q 035707 434 KTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLL--------------AR-VLSAQKQFADAESV 498 (713)
Q Consensus 434 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~l--------------a~-~~~~~g~~~~A~~~ 498 (713)
..+|.++.++..+|.++...|++++|+..+++++...|.+. ..+..+ +. ++...|++++|+..
T Consensus 83 -~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 160 (327)
T 3cv0_A 83 -MLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE-QLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTL 160 (327)
T ss_dssp -HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTT-TC--------------------CCTTSHHHHHHHHHH
T ss_pred -hcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH-HHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHH
Confidence 99999999999999999999999999999999999999987 777666 66 68889999999999
Q ss_pred HHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHH
Q 035707 499 INDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVY 578 (713)
Q Consensus 499 ~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 578 (713)
++++++..| .+..++..+|.++...|++++|+..+++++...|.+ ..++..+|.++
T Consensus 161 ~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----------------------~~~~~~l~~~~ 216 (327)
T 3cv0_A 161 LHAALEMNP--NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD----------------------AQLWNKLGATL 216 (327)
T ss_dssp HHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------------------HHHHHHHHHHH
T ss_pred HHHHHhhCC--CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc----------------------HHHHHHHHHHH
Confidence 999999998 689999999999999999999999999999987654 78999999999
Q ss_pred HHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHH
Q 035707 579 TSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPN------------HVPSLVSIARVL 646 (713)
Q Consensus 579 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~------------~~~~~~~la~~~ 646 (713)
...|++++|+.+|+++++..|.++.++..+|.++...|++++|+..|++++...|+ +..++..++.++
T Consensus 217 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 296 (327)
T 3cv0_A 217 ANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLL 296 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 789999999999
Q ss_pred HHhcCCChHHHHHHHHHHHhhCC
Q 035707 647 RQIGGESMATIRCFLTDALRLDR 669 (713)
Q Consensus 647 ~~~g~~~l~~A~~~~~~al~~~p 669 (713)
...|+++ +|...++++++..|
T Consensus 297 ~~~g~~~--~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 297 NVMNRPD--LVELTYAQNVEPFA 317 (327)
T ss_dssp HHTTCHH--HHHHHTTCCSHHHH
T ss_pred HhcCCHH--HHHHHHHHHHHhcc
Confidence 9999997 99999988877544
No 27
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.94 E-value=4.1e-25 Score=221.11 Aligned_cols=243 Identities=13% Similarity=0.078 Sum_probs=219.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCC-cHHHHHHH
Q 035707 440 DPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWD-QGELLRTK 518 (713)
Q Consensus 440 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~l 518 (713)
+++.++.+|.++...|++++|+..|+++++.+|.+. .++..+|.++...|++++|+..++++++..+.+. ...++..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSP-YIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCS-TTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 456789999999999999999999999999999998 9999999999999999999999999999432222 25568999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Q 035707 519 AKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAIN 598 (713)
Q Consensus 519 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 598 (713)
|.++...|++++|+..|++++..+|.+ ..+|..+|.+|...|++++|+.+|+++++.+
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~~----------------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 138 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTTR----------------------LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT 138 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTC----------------------THHHHHHHHHHHHTTCHHHHHHHHGGGCCSS
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCccc----------------------HHHHHHHHHHHHHccCHHHHHHHHHHHhhcC
Confidence 999999999999999999999997754 7899999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHhhC---CCC-
Q 035707 599 PYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGG---ESMATIRCFLTDALRLD---RTN- 671 (713)
Q Consensus 599 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~l~~A~~~~~~al~~~---p~~- 671 (713)
|.++.++..+|......+++++|+..|+++++.+|+++.++..+|.++...|+ ++ +|+..|+++++.. |+.
T Consensus 139 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~--~A~~~~~~a~~~~~~~~~~~ 216 (272)
T 3u4t_A 139 TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQG--LAKPYYEKLIEVCAPGGAKY 216 (272)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSC--TTHHHHHHHHHHHGGGGGGG
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhH--HHHHHHHHHHHHHhcccccc
Confidence 99999999999555556799999999999999999999999999999999998 77 8999999999875 442
Q ss_pred ----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCCCC
Q 035707 672 ----TTAWYNLGLLYKTYAGASALEAVECFEAAALLEESAPV 709 (713)
Q Consensus 672 ----~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~~~ 709 (713)
..++..+|.+|...|+ +++|+.+|+++++++|+++.
T Consensus 217 ~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~al~~~p~~~~ 256 (272)
T 3u4t_A 217 KDELIEANEYIAYYYTINRD--KVKADAAWKNILALDPTNKK 256 (272)
T ss_dssp HHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHH
T ss_pred hHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCccHHH
Confidence 3688999999999999 99999999999999999864
No 28
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.5e-24 Score=213.26 Aligned_cols=239 Identities=13% Similarity=0.072 Sum_probs=206.9
Q ss_pred HHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 035707 395 SIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARS 474 (713)
Q Consensus 395 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 474 (713)
+.++..+|.++ ...|++++|+..|++++ ..+ .++.+++.+|.++...|++++|+..+++++...|.+
T Consensus 5 a~~~~~~g~~~-----------~~~~~~~~A~~~~~~a~-~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 71 (258)
T 3uq3_A 5 ADKEKAEGNKF-----------YKARQFDEAIEHYNKAW-ELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM 71 (258)
T ss_dssp HHHHHHHHHHH-----------HHTTCHHHHHHHHHHHH-HHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-----------HHhccHHHHHHHHHHHH-Hhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence 47788889988 78888899999999999 888 888899999999999999999999999999988876
Q ss_pred -------chHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh
Q 035707 475 -------NVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKK 547 (713)
Q Consensus 475 -------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 547 (713)
. .++..+|.++...|++++|+..+++++...|. +.++...|++++|+..+++++...|..
T Consensus 72 ~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----------~~~~~~~~~~~~a~~~~~~~~~~~~~~-- 138 (258)
T 3uq3_A 72 RADYKVIS-KSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT----------ADILTKLRNAEKELKKAEAEAYVNPEK-- 138 (258)
T ss_dssp TCCHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHHHHHHHHHHCCHHH--
T ss_pred ccchHHHH-HHHHHHHHHHHHcccHHHHHHHHHHHHhcCch----------hHHHHHHhHHHHHHHHHHHHHHcCcch--
Confidence 4 78888999999999999999999999988872 345677788889999999888876544
Q ss_pred hhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 035707 548 SFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRK 627 (713)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 627 (713)
+.++..+|.++...|++++|+.+|++++..+|.++.++..+|.++...|++++|+..|++
T Consensus 139 --------------------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 139 --------------------AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp --------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 788888999999999999999999999999998888899999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhC------CCCHHHHHHHHHH
Q 035707 628 ALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLD------RTNTTAWYNLGLL 681 (713)
Q Consensus 628 al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~------p~~~~~~~~lg~~ 681 (713)
+++.+|+++.++..+|.++...|+++ +|+.+++++++++ |++..++..++.+
T Consensus 199 al~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 199 AIEKDPNFVRAYIRKATAQIAVKEYA--SALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHhCHHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 99999998999999999999999887 8999999998888 8888777777654
No 29
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.93 E-value=6.9e-25 Score=211.37 Aligned_cols=201 Identities=19% Similarity=0.176 Sum_probs=143.3
Q ss_pred cCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhh
Q 035707 472 ARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSA 551 (713)
Q Consensus 472 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 551 (713)
|.++ .++..+|.++...|++++|+..|+++++.+| ++..++..+|.++...|++++|+..|+++++.+|++
T Consensus 2 p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~------ 72 (217)
T 2pl2_A 2 QTAE-QNPLRLGVQLYALGRYDAALTLFERALKENP--QDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY------ 72 (217)
T ss_dssp --CC-HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS--SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred CCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------
Confidence 3344 4555555555555555555555555555555 445555555555555555555555555555554433
Q ss_pred hhhhhhhcccCCCccHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHH
Q 035707 552 GKNLVKNRQNHDRSLEMETWHDLANVYTSL-----------SQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQE 620 (713)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~e 620 (713)
+.++..+|.++... |++++|+..|+++++++|+++.++..+|.++...|++++
T Consensus 73 ----------------~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~ 136 (217)
T 2pl2_A 73 ----------------LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDK 136 (217)
T ss_dssp ----------------HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred ----------------HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHH
Confidence 45555555555555 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 035707 621 ALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAA 700 (713)
Q Consensus 621 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a 700 (713)
|+..|+++++++ +++.++..+|.++...|+++ +|+..|+++++.+|+++.++..+|.++...|+ +++|+.+|+++
T Consensus 137 A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~--~~~A~~~~~~~ 211 (217)
T 2pl2_A 137 AEASLKQALALE-DTPEIRSALAELYLSMGRLD--EALAQYAKALEQAPKDLDLRVRYASALLLKGK--AEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHH--HHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCChHHHHHHHHHHHHccC--HHHHHHHHHHH
Confidence 999999999999 99999999999999999997 99999999999999999999999999999999 99999999987
Q ss_pred Hc
Q 035707 701 AL 702 (713)
Q Consensus 701 ~~ 702 (713)
-.
T Consensus 212 ~~ 213 (217)
T 2pl2_A 212 HH 213 (217)
T ss_dssp --
T ss_pred hh
Confidence 53
No 30
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.93 E-value=9e-25 Score=232.14 Aligned_cols=303 Identities=17% Similarity=0.159 Sum_probs=262.3
Q ss_pred CChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHH
Q 035707 353 DCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETA 432 (713)
Q Consensus 353 ~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 432 (713)
.....+...|..+...|++. +|+.+|+++++ ..|.+......++..+|.++ ...|++++|+..|+++
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~-~A~~~~~~al~-~~~~~~~~~~~~~~~l~~~~-----------~~~g~~~~A~~~~~~a 73 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCR-AGVSFFEAAVQ-VGTEDLKTLSAIYSQLGNAY-----------FYLHDYAKALEYHHHD 73 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHH-HCCSCHHHHHHHHHHHHHHH-----------HHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHH-HHHHHHHHHHh-cCcccHHHHHHHHHHHHHHH-----------HHhcCHHHHHHHHHHH
Confidence 45677889999999999999 99999999999 78887766678999999999 8889999999999999
Q ss_pred HHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCc-----hHHHHHHHHHHHHcCC----------
Q 035707 433 EKTM------RERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSN-----VKGYLLLARVLSAQKQ---------- 491 (713)
Q Consensus 433 l~~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~~la~~~~~~g~---------- 491 (713)
+ .+ .|....++..+|.++...|++++|+.++++++...|... ..++..+|.++...|+
T Consensus 74 l-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~ 152 (406)
T 3sf4_A 74 L-TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDV 152 (406)
T ss_dssp H-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------
T ss_pred H-HHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchh
Confidence 8 76 344577899999999999999999999999999876542 1489999999999999
Q ss_pred ----------HHHHHHHHHHHhhccCC----CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 035707 492 ----------FADAESVINDSLDQTGK----WDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVK 557 (713)
Q Consensus 492 ----------~~~A~~~~~~al~~~p~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 557 (713)
+++|+..+++++...+. +....++..+|.++...|++++|+..+++++...+..
T Consensus 153 ~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------------ 220 (406)
T 3sf4_A 153 GEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF------------ 220 (406)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT------------
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc------------
Confidence 99999999999887311 1345688999999999999999999999999997753
Q ss_pred hcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 035707 558 NRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYS------ASGWHSTGLLYEAKGLQQEALVSFRKALDA 631 (713)
Q Consensus 558 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 631 (713)
...+....++..+|.+|...|++++|+.++++++.+.|.. ..++..+|.++...|++++|+..|++++.+
T Consensus 221 ----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 221 ----GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp ----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 2223446789999999999999999999999999887655 678899999999999999999999999987
Q ss_pred CCCC------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHhCC
Q 035707 632 EPNH------VPSLVSIARVLRQIGGESMATIRCFLTDALRLDR------TNTTAWYNLGLLYKTYAG 687 (713)
Q Consensus 632 ~p~~------~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~ 687 (713)
.+.. ..++..+|.++...|+++ +|+.++++++++.+ ....++..+|.++...|+
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHD--QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGL 362 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhH
Confidence 5543 668899999999999997 99999999998743 335788999999999998
No 31
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.93 E-value=1.2e-24 Score=209.68 Aligned_cols=200 Identities=18% Similarity=0.095 Sum_probs=178.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHH
Q 035707 438 ERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRT 517 (713)
Q Consensus 438 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 517 (713)
|+++.+++.+|.++...|++++|+..|+++++.+|+++ .++..+|.++...|++++|+..|+++++.+| ++..++..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDP-EALYWLARTQLKLGLVNPALENGKTLVARTP--RYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHH
Confidence 78889999999999999999999999999999999999 9999999999999999999999999999999 78999999
Q ss_pred HHHHHHHh-----------CCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHH
Q 035707 518 KAKLQIAQ-----------GRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRD 586 (713)
Q Consensus 518 la~~~~~~-----------g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 586 (713)
+|.++... |++++|+..|+++++.+|++ +.+|..+|.++...|++++
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~----------------------~~~~~~lg~~~~~~g~~~~ 136 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY----------------------APLHLQRGLVYALLGERDK 136 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC----------------------HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc----------------------HHHHHHHHHHHHHcCChHH
Confidence 99999999 99999999999999998765 8999999999999999999
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 035707 587 AEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDAL 665 (713)
Q Consensus 587 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al 665 (713)
|+..|+++++++ +++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+++ +|+..|+++-
T Consensus 137 A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~--~A~~~~~~~~ 212 (217)
T 2pl2_A 137 AEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAE--EAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-----------------
T ss_pred HHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHH--HHHHHHHHHh
Confidence 999999999999 899999999999999999999999999999999999999999999999999998 9999988764
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.93 E-value=1.8e-24 Score=218.10 Aligned_cols=257 Identities=16% Similarity=0.061 Sum_probs=226.3
Q ss_pred HHHhcHHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHH
Q 035707 417 KRILKQSQALVALETAEKTMRERD-PYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADA 495 (713)
Q Consensus 417 ~~~~~~~~A~~~~~~al~~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A 495 (713)
...|++.+|+..+++.. ..+|++ ....+.++.+|...|+++.|+..++.. +|... .++..++..+...+++++|
T Consensus 10 ~~~g~y~~ai~~~~~~~-~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~~-~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVK-PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPEL-QAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHTTCHHHHHHHHHHSC-CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHHH-HHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHhcc-cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChhH-HHHHHHHHHHcCCCcHHHH
Confidence 56899999999999887 777776 457788999999999999999887652 44444 7888999999999999999
Q ss_pred HHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHH
Q 035707 496 ESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLA 575 (713)
Q Consensus 496 ~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 575 (713)
+..+++++.....|++..+++.+|.++...|++++|++.+++ |.+ ..++..+|
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~----------------------~~~~~~l~ 137 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDS----------------------LECMAMTV 137 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCS----------------------HHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCC----------------------HHHHHHHH
Confidence 999999987642227899999999999999999999999987 433 78999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHH--HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCC
Q 035707 576 NVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTG--LLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGES 653 (713)
Q Consensus 576 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg--~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 653 (713)
.++..+|++++|+..|+++++.+|++.......+ .++...|++++|+..|+++++.+|+++.+++++|.++...|+++
T Consensus 138 ~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 217 (291)
T 3mkr_A 138 QILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWE 217 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999999998765444333 33445689999999999999999999999999999999999997
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHccccCCCC
Q 035707 654 MATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALE-AVECFEAAALLEESAPV 709 (713)
Q Consensus 654 l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~-A~~~~~~a~~l~p~~~~ 709 (713)
+|+..|+++++.+|+++.+++++|.++...|+ ..+ +..+++++++++|++|.
T Consensus 218 --eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~--~~eaa~~~~~~~~~~~P~~~~ 270 (291)
T 3mkr_A 218 --AAEGVLQEALDKDSGHPETLINLVVLSQHLGK--PPEVTNRYLSQLKDAHRSHPF 270 (291)
T ss_dssp --HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHCTTCHH
T ss_pred --HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCCCChH
Confidence 99999999999999999999999999999999 976 57899999999999874
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.93 E-value=7e-24 Score=213.80 Aligned_cols=279 Identities=11% Similarity=0.026 Sum_probs=237.8
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCH
Q 035707 362 SKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDP 441 (713)
Q Consensus 362 a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~ 441 (713)
.+..+..|++. +|+..++++.. ..|.+. ..+...++.+| ...|++++|+..++ ..+|.+.
T Consensus 6 ~~~~~~~g~y~-~ai~~~~~~~~-~~p~~~---~e~~~~l~r~y-----------i~~g~~~~al~~~~----~~~~~~~ 65 (291)
T 3mkr_A 6 VKNAFYIGSYQ-QCINEAQRVKP-SSPERD---VERDVFLYRAY-----------LAQRKYGVVLDEIK----PSSAPEL 65 (291)
T ss_dssp HHHHHHTTCHH-HHHHHHHHSCC-CSHHHH---HHHHHHHHHHH-----------HHTTCHHHHHHHSC----TTSCHHH
T ss_pred HHHHHHHHHHH-HHHHHHHhccc-CCchhh---HHHHHHHHHHH-----------HHCCCHHHHHHHhc----ccCChhH
Confidence 34567899999 99999988655 444432 36778889999 78889999998775 3355567
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--hcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHH
Q 035707 442 YIIYHLCLENAEQRKLDVALYYAKKLLNL--EARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKA 519 (713)
Q Consensus 442 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la 519 (713)
.++..++..+...+++++|++.+++++.. +|+++ .+++.+|.++...|++++|+..+++ | .+..++..+|
T Consensus 66 ~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~-~~~~~la~~~~~~g~~~~Al~~l~~-----~--~~~~~~~~l~ 137 (291)
T 3mkr_A 66 QAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNT-TFLLMAASIYFYDQNPDAALRTLHQ-----G--DSLECMAMTV 137 (291)
T ss_dssp HHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCH-HHHHHHHHHHHHTTCHHHHHHHHTT-----C--CSHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCH-HHHHHHHHHHHHCCCHHHHHHHHhC-----C--CCHHHHHHHH
Confidence 78888999999999999999999999876 59988 9999999999999999999999988 5 6889999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHH--HHHHHHHCCCHHHHHHHHHHHHhc
Q 035707 520 KLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHD--LANVYTSLSQWRDAEVCLSKSKAI 597 (713)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~ 597 (713)
.++...|++++|++.|+++++.+|++ ...... +..++...|++++|+.+|+++++.
T Consensus 138 ~~~~~~g~~~~A~~~l~~~~~~~p~~----------------------~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~ 195 (291)
T 3mkr_A 138 QILLKLDRLDLARKELKKMQDQDEDA----------------------TLTQLATAWVSLAAGGEKLQDAYYIFQEMADK 195 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC----------------------HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCc----------------------HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh
Confidence 99999999999999999999997643 222222 223344569999999999999999
Q ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHH
Q 035707 598 NPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYN 677 (713)
Q Consensus 598 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~ 677 (713)
.|.++.+++.+|.++...|++++|+..|++++..+|+++.++.++|.++...|+.+ +.+..+++++++++|+++.+.
T Consensus 196 ~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~-eaa~~~~~~~~~~~P~~~~~~-- 272 (291)
T 3mkr_A 196 CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPP-EVTNRYLSQLKDAHRSHPFIK-- 272 (291)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHCTTCHHHH--
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCCCChHHH--
Confidence 99999999999999999999999999999999999999999999999999999986 346799999999999999765
Q ss_pred HHHHHHHhCCCCHHHHHHHH
Q 035707 678 LGLLYKTYAGASALEAVECF 697 (713)
Q Consensus 678 lg~~~~~~g~~~~~~A~~~~ 697 (713)
....+.+. ++++..-|
T Consensus 273 --d~~~~~~~--fd~~~~~~ 288 (291)
T 3mkr_A 273 --EYRAKEND--FDRLVLQY 288 (291)
T ss_dssp --HHHHHHHH--HHHHHHHH
T ss_pred --HHHHHHHH--HHHHHHHc
Confidence 34666677 77777665
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4.2e-24 Score=211.55 Aligned_cols=229 Identities=17% Similarity=0.098 Sum_probs=214.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC--Cc---HHH
Q 035707 440 DPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKW--DQ---GEL 514 (713)
Q Consensus 440 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~---~~~ 514 (713)
.+..++.+|.++...|++++|+..|+++++.+ .++ .++..+|.++...|++++|+..++++++..|.. .. ..+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~-~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDI-TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccH-HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 46789999999999999999999999999999 777 999999999999999999999999999987621 11 689
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 035707 515 LRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKS 594 (713)
Q Consensus 515 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 594 (713)
+..+|.++...|++++|+..|++++...|. +.++...|++++|+..++++
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------------------------------~~~~~~~~~~~~a~~~~~~~ 131 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRT------------------------------ADILTKLRNAEKELKKAEAE 131 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------------------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCch------------------------------hHHHHHHhHHHHHHHHHHHH
Confidence 999999999999999999999999998542 34567778899999999999
Q ss_pred HhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHH
Q 035707 595 KAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTA 674 (713)
Q Consensus 595 l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~ 674 (713)
+..+|.++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|+++ +|+.+++++++.+|+++.+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~al~~~~~~~~~ 209 (258)
T 3uq3_A 132 AYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFP--EAIADCNKAIEKDPNFVRA 209 (258)
T ss_dssp HHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHCTTCHHH
T ss_pred HHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHhCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999997 9999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHccc
Q 035707 675 WYNLGLLYKTYAGASALEAVECFEAAALLE 704 (713)
Q Consensus 675 ~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~ 704 (713)
|..+|.++...|+ +++|..+|++++++.
T Consensus 210 ~~~l~~~~~~~g~--~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 210 YIRKATAQIAVKE--YASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHTTC--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh--HHHHHHHHHHHHHhC
Confidence 9999999999999 999999999999999
No 35
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.93 E-value=1.5e-22 Score=223.26 Aligned_cols=393 Identities=7% Similarity=-0.026 Sum_probs=305.0
Q ss_pred CchhHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHh---------
Q 035707 276 RNNIEEAVLLLLILLKKIVLGKIEWDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCY--------- 346 (713)
Q Consensus 276 ~~~~eeA~~ll~~~~~~~~l~~~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~--------- 346 (713)
.+++++|..++ ..++...|.++.++..++..+.+.|+++.|.+.|++++...+ +...|...+...
T Consensus 25 ~~~~~~a~~~~-----e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~ 98 (530)
T 2ooe_A 25 NQPIDKARKTY-----ERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPS 98 (530)
T ss_dssp SSCHHHHHHHH-----HHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTT
T ss_pred hCCHHHHHHHH-----HHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHccchhh
Confidence 35678887766 667788999999999999999999999999999999999886 567787766422
Q ss_pred ---------hcc-----cCCCChHHHHHHHHHHHh---------cCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHH
Q 035707 347 ---------LGE-----ENSDCNLELLVASKICAE---------NKVCIEEGITYARKALSMLQGKCRQMASIANCLLGV 403 (713)
Q Consensus 347 ---------~~~-----~~p~~~~~~~~~a~~~~~---------~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~ 403 (713)
..+ .+|++...|...+..... .|++. +|..+|+++++ . |.... ...+.....
T Consensus 99 a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~-~a~~~y~~al~-~-P~~~~--~~~~~~~~~ 173 (530)
T 2ooe_A 99 YKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRIT-AVRRVYQRGCV-N-PMINI--EQLWRDYNK 173 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHH-HHHHHHHHHTT-S-CCTTH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHH-HHHHHHHHHHh-c-hhhhH--HHHHHHHHH
Confidence 111 356777777777766654 67888 99999999998 4 43320 122221111
Q ss_pred HHhhcccccc--cHHHHHhcHHHHHHHHHH------HHHhh-----CCCC-------HHHHHHHHHHHHHc----CCH--
Q 035707 404 LLSSQSRSVV--SDSKRILKQSQALVALET------AEKTM-----RERD-------PYIIYHLCLENAEQ----RKL-- 457 (713)
Q Consensus 404 ~~~~~~~~~~--~~~~~~~~~~~A~~~~~~------al~~~-----~p~~-------~~~~~~la~~~~~~----g~~-- 457 (713)
.-...+.... ....+.+++.+|...+.. .+ .. .|.. ...|.......... ++.
T Consensus 174 ~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l-~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~ 252 (530)
T 2ooe_A 174 YEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGL-DRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTL 252 (530)
T ss_dssp HHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHC-CSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHH
T ss_pred HHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-ccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchh
Confidence 1100000000 000235677888877765 33 22 2322 23444433322221 232
Q ss_pred --HHHHHHHHHHHhhhcCCchHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHhh-ccCCCCcHHHHHHHHH
Q 035707 458 --DVALYYAKKLLNLEARSNVKGYLLLARVLSA-------QKQFA-------DAESVINDSLD-QTGKWDQGELLRTKAK 520 (713)
Q Consensus 458 --~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~al~-~~p~~~~~~~~~~la~ 520 (713)
..++..|++++...|.++ .+|..+|..+.. .|+++ +|+.+|+++++ ..| .+..+|..++.
T Consensus 253 ~~~~a~~~y~~al~~~p~~~-~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p--~~~~l~~~~~~ 329 (530)
T 2ooe_A 253 ITKRVMFAYEQCLLVLGHHP-DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK--KNMLLYFAYAD 329 (530)
T ss_dssp HHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCS--SCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCc--ccHHHHHHHHH
Confidence 478899999999999999 999999999986 79987 99999999997 778 78999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Q 035707 521 LQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPY 600 (713)
Q Consensus 521 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 600 (713)
++...|++++|...|+++++..|.+ ...+|..++.++.+.|++++|..+|+++++..|.
T Consensus 330 ~~~~~g~~~~A~~~~~~al~~~p~~---------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~ 388 (530)
T 2ooe_A 330 YEESRMKYEKVHSIYNRLLAIEDID---------------------PTLVYIQYMKFARRAEGIKSGRMIFKKAREDART 388 (530)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSSC---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHhcCCHHHHHHHHHHHhCccccC---------------------chHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 9999999999999999999985532 1358999999999999999999999999999998
Q ss_pred ChhHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHH----HH
Q 035707 601 SASGWHSTGLL-YEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTT----AW 675 (713)
Q Consensus 601 ~~~~~~~lg~~-~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~----~~ 675 (713)
+...+...+.+ +...|++++|...|+++++..|+++.+|..++.++...|+.+ +|+.+|++++...|.++. .|
T Consensus 389 ~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~--~Ar~~~~~al~~~~~~~~~~~~lw 466 (530)
T 2ooe_A 389 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDN--NTRVLFERVLTSGSLPPEKSGEIW 466 (530)
T ss_dssp CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHH--HHHHHHHHHHHSCCSCGGGCHHHH
T ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHh--hHHHHHHHHHhccCCCHHHHHHHH
Confidence 87777777766 346899999999999999999999999999999999999987 999999999998776654 88
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHccccCCC
Q 035707 676 YNLGLLYKTYAGASALEAVECFEAAALLEESAP 708 (713)
Q Consensus 676 ~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~~ 708 (713)
...+......|+ .+.+..+++++++..|+++
T Consensus 467 ~~~~~~e~~~G~--~~~~~~~~~r~~~~~p~~~ 497 (530)
T 2ooe_A 467 ARFLAFESNIGD--LASILKVEKRRFTAFREEY 497 (530)
T ss_dssp HHHHHHHHHSSC--HHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHcCC--HHHHHHHHHHHHHHCchhc
Confidence 888999999999 9999999999999998644
No 36
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.92 E-value=6.8e-24 Score=212.20 Aligned_cols=240 Identities=15% Similarity=0.119 Sum_probs=124.2
Q ss_pred HHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCc---hHHHHHHHHHHHHcCCHH
Q 035707 417 KRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSN---VKGYLLLARVLSAQKQFA 493 (713)
Q Consensus 417 ~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~~la~~~~~~g~~~ 493 (713)
...|++++|+..|++++ ..+|.++.+++.+|.++...|++++|+..+++++. .|.++ ..++..+|.++...|+++
T Consensus 14 ~~~~~~~~A~~~~~~~l-~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~ 91 (272)
T 3u4t_A 14 FKNNNYAEAIEVFNKLE-AKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDS 91 (272)
T ss_dssp HTTTCHHHHHHHHHHHH-HTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HHhcCHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHH
Confidence 44455555555555555 55555555555555555555555555555555555 22221 123555555555555555
Q ss_pred HHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHH
Q 035707 494 DAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHD 573 (713)
Q Consensus 494 ~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (713)
+|+..|+++++.+| .+..++..+|.++...|++++|+..|++++...|.+ +.+|..
T Consensus 92 ~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~----------------------~~~~~~ 147 (272)
T 3u4t_A 92 LAIQQYQAAVDRDT--TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD----------------------PKVFYE 147 (272)
T ss_dssp HHHHHHHHHHHHST--TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC----------------------HHHHHH
T ss_pred HHHHHHHHHHhcCc--ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc----------------------HHHHHH
Confidence 55555555555555 344555555555555555555555555555543322 455555
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCC---HHHHHHHHHHHHhcC---CC-----CHHHHHHH
Q 035707 574 LANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGL---QQEALVSFRKALDAE---PN-----HVPSLVSI 642 (713)
Q Consensus 574 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~---~~eA~~~~~~al~~~---p~-----~~~~~~~l 642 (713)
+|......+++++|+.+|+++++.+|.++.++..+|.++...|+ +++|+..|+++++.. |+ ...++..+
T Consensus 148 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 227 (272)
T 3u4t_A 148 LGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYI 227 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 55222233355555555555555555555555555555555555 555555555555543 22 12355555
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 035707 643 ARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKT 684 (713)
Q Consensus 643 a~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 684 (713)
|.++...|+++ +|+.+|+++++++|+++.++-.++.+...
T Consensus 228 ~~~~~~~~~~~--~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 228 AYYYTINRDKV--KADAAWKNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHHHHHTTCHH--HHHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred HHHHHHcCCHH--HHHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence 55555555554 55555555555555555555555554433
No 37
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.92 E-value=5e-23 Score=227.13 Aligned_cols=350 Identities=10% Similarity=-0.052 Sum_probs=253.0
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHhcCCCh
Q 035707 293 IVLGKIEWDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICAENKVCI 372 (713)
Q Consensus 293 ~~l~~~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~~g~~~ 372 (713)
..+...|.+..++..++. +...|+++.+...|++++.. +|.+...|...+..+...|+++
T Consensus 4 ~al~~~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-------------------~P~~~~~w~~~~~~~~~~~~~~ 63 (530)
T 2ooe_A 4 KKLEENPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-------------------FPSSGRFWKLYIEAEIKAKNYD 63 (530)
T ss_dssp HHHHHCTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-------------------CTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHhhhCCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-------------------CCCCHHHHHHHHHHHHhcCCHH
Confidence 345678999999999998 47889999999999999884 5888888888888888899999
Q ss_pred HHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHH----HHHHHHHHhh---CCCCHHHHH
Q 035707 373 EEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQAL----VALETAEKTM---RERDPYIIY 445 (713)
Q Consensus 373 ~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~----~~~~~al~~~---~p~~~~~~~ 445 (713)
+|...|++++. ..| +. ..|..++.... ...|++++|. ..|++++ .. +|.+..+|.
T Consensus 64 -~a~~~~~ral~-~~p-~~----~lw~~~~~~~~----------~~~~~~~~a~~~~~~~~~~al-~~~g~~~~~~~~w~ 125 (530)
T 2ooe_A 64 -KVEKLFQRCLM-KVL-HI----DLWKCYLSYVR----------ETKGKLPSYKEKMAQAYDFAL-DKIGMEIMSYQIWV 125 (530)
T ss_dssp -HHHHHHHHHTT-TCC-CH----HHHHHHHHHHH----------HHTTTSTTHHHHHHHHHHHHH-HHTTTSTTCHHHHH
T ss_pred -HHHHHHHHHHh-cCC-Ch----HHHHHHHHHHH----------HHccchhhHHHHHHHHHHHHH-HHCCCCcccHHHHH
Confidence 99999999998 666 44 45555553221 1222222222 2444444 32 234445555
Q ss_pred HHHHHHHH---------cCCHHHHHHHHHHHHhhhcCCch-HHHHHHHHHH-------------HHcCCHH---------
Q 035707 446 HLCLENAE---------QRKLDVALYYAKKLLNLEARSNV-KGYLLLARVL-------------SAQKQFA--------- 493 (713)
Q Consensus 446 ~la~~~~~---------~g~~~~A~~~~~~~l~~~p~~~~-~~~~~la~~~-------------~~~g~~~--------- 493 (713)
..+..... .|+++.|..+|++++. .|.... ..|....... ...+++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~ 204 (530)
T 2ooe_A 126 DYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEY 204 (530)
T ss_dssp HHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 54444433 4555555555555555 333210 1111111100 0112222
Q ss_pred ---------------------------------------------------HHHHHHHHHhhccCCCCcHHHHHHHHHHH
Q 035707 494 ---------------------------------------------------DAESVINDSLDQTGKWDQGELLRTKAKLQ 522 (713)
Q Consensus 494 ---------------------------------------------------~A~~~~~~al~~~p~~~~~~~~~~la~~~ 522 (713)
.++..|++++...| .+..+|..+|.++
T Consensus 205 ~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p--~~~~~w~~~~~~~ 282 (530)
T 2ooe_A 205 ETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG--HHPDIWYEAAQYL 282 (530)
T ss_dssp HHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred HHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHH
Confidence 45556666666665 4566666666666
Q ss_pred HH-------hCCHH-------HHHHHHHHHHH-HHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHH
Q 035707 523 IA-------QGRLK-------NAIETYVNLLA-VLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDA 587 (713)
Q Consensus 523 ~~-------~g~~~-------~A~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 587 (713)
.. .|+++ +|+..|++++. .. |....+|..++.++...|++++|
T Consensus 283 ~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~----------------------p~~~~l~~~~~~~~~~~g~~~~A 340 (530)
T 2ooe_A 283 EQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL----------------------KKNMLLYFAYADYEESRMKYEKV 340 (530)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTC----------------------SSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhC----------------------cccHHHHHHHHHHHHhcCCHHHH
Confidence 54 46654 56666666654 33 44589999999999999999999
Q ss_pred HHHHHHHHhcCCCCh-hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHhcCCChHHHHHHHHHHH
Q 035707 588 EVCLSKSKAINPYSA-SGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVL-RQIGGESMATIRCFLTDAL 665 (713)
Q Consensus 588 ~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~l~~A~~~~~~al 665 (713)
..+|++++++.|.++ .+|..++.++...|++++|...|+++++..|.....+...+.+. ...|+++ +|+.+|++++
T Consensus 341 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~--~A~~~~e~al 418 (530)
T 2ooe_A 341 HSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKS--VAFKIFELGL 418 (530)
T ss_dssp HHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHH--HHHHHHHHHH
T ss_pred HHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChh--HHHHHHHHHH
Confidence 999999999999885 69999999999999999999999999999998888777777663 4578886 9999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCCCC
Q 035707 666 RLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALLEESAPV 709 (713)
Q Consensus 666 ~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~~~ 709 (713)
+..|+++.+|..++.++...|+ .++|..+|++++...|.+|.
T Consensus 419 ~~~p~~~~~~~~~~~~~~~~g~--~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 419 KKYGDIPEYVLAYIDYLSHLNE--DNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTC--HHHHHHHHHHHHHSCCSCGG
T ss_pred HHCCCCHHHHHHHHHHHHhCCC--HhhHHHHHHHHHhccCCCHH
Confidence 9999999999999999999999 99999999999998777653
No 38
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.92 E-value=5.7e-24 Score=225.92 Aligned_cols=280 Identities=18% Similarity=0.162 Sum_probs=244.7
Q ss_pred HHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 035707 395 SIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDP----YIIYHLCLENAEQRKLDVALYYAKKLLNL 470 (713)
Q Consensus 395 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 470 (713)
..++..+|.++ ...|++++|+..|++++ ...|.++ .+++.+|.++...|++++|+.++++++..
T Consensus 9 ~~~l~~~g~~~-----------~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 76 (406)
T 3sf4_A 9 CLELALEGERL-----------CKSGDCRAGVSFFEAAV-QVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL 76 (406)
T ss_dssp HHHHHHHHHHH-----------HHTTCHHHHHHHHHHHH-HHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----------HHhccHHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 47788999999 88999999999999999 9999884 57899999999999999999999999887
Q ss_pred h------cCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCC----cHHHHHHHHHHHHHhCC-------------
Q 035707 471 E------ARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWD----QGELLRTKAKLQIAQGR------------- 527 (713)
Q Consensus 471 ~------p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~~la~~~~~~g~------------- 527 (713)
. |... .++..+|.++...|++++|+..++++++..+... ...++..+|.++...|+
T Consensus 77 ~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~ 155 (406)
T 3sf4_A 77 ARTIGDQLGEA-KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEF 155 (406)
T ss_dssp HHHTTCHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCC
T ss_pred HHhccccHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhh
Confidence 3 3334 6899999999999999999999999998864211 25588999999999999
Q ss_pred -------HHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Q 035707 528 -------LKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPY 600 (713)
Q Consensus 528 -------~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 600 (713)
+++|+..+++++...+.. ...+....++..+|.++...|++++|+.++++++.+.|.
T Consensus 156 ~~~a~~~~~~A~~~~~~al~~~~~~----------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 219 (406)
T 3sf4_A 156 PEEVRDALQAAVDFYEENLSLVTAL----------------GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 219 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhc----------------cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 999999999999886532 233555789999999999999999999999999988765
Q ss_pred Chh------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhC
Q 035707 601 SAS------GWHSTGLLYEAKGLQQEALVSFRKALDAEPNH------VPSLVSIARVLRQIGGESMATIRCFLTDALRLD 668 (713)
Q Consensus 601 ~~~------~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~ 668 (713)
... ++..+|.++...|++++|+..|++++.+.|.. ..++..+|.++...|+++ +|+.++++++++.
T Consensus 220 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 220 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYE--KAIDYHLKHLAIA 297 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHH--HHHHHHHHHHHHH
Confidence 544 89999999999999999999999999887655 678899999999999997 9999999999875
Q ss_pred CCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCC
Q 035707 669 RTN------TTAWYNLGLLYKTYAGASALEAVECFEAAALLEESA 707 (713)
Q Consensus 669 p~~------~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~ 707 (713)
+.. ..++..+|.+|...|+ +++|..+|++++++.+..
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~ 340 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGN--HDQAMHFAEKHLEISREV 340 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHT
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHh
Confidence 543 5688999999999999 999999999999875543
No 39
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.92 E-value=5.2e-24 Score=226.98 Aligned_cols=278 Identities=18% Similarity=0.144 Sum_probs=244.1
Q ss_pred HHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 035707 395 SIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDP----YIIYHLCLENAEQRKLDVALYYAKKLLNL 470 (713)
Q Consensus 395 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 470 (713)
...+..+|..+ ...|++++|+..|++++ ...|+++ .+++.+|.++...|++++|+.++++++..
T Consensus 48 ~~~l~~~g~~~-----------~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (411)
T 4a1s_A 48 CLELALEGERL-----------CNAGDCRAGVAFFQAAI-QAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL 115 (411)
T ss_dssp HHHHHHHHHHH-----------HHTTCHHHHHHHHHHHH-HHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----------HHhCcHHHHHHHHHHHH-HhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 36777899999 88999999999999999 9999987 57899999999999999999999999987
Q ss_pred ------hcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccC----CCCcHHHHHHHHHHHHHhCC-------------
Q 035707 471 ------EARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTG----KWDQGELLRTKAKLQIAQGR------------- 527 (713)
Q Consensus 471 ------~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~~~la~~~~~~g~------------- 527 (713)
.|... .++..+|.++...|++++|+..++++++..+ .+....++..+|.++...|+
T Consensus 116 ~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~ 194 (411)
T 4a1s_A 116 AKSMNDRLGEA-KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDD 194 (411)
T ss_dssp HHHTTCHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHH
T ss_pred HHHccCchHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhh
Confidence 45555 7999999999999999999999999998831 11456789999999999999
Q ss_pred ----HHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh
Q 035707 528 ----LKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSAS 603 (713)
Q Consensus 528 ----~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 603 (713)
+++|+..+++++.+.+.. ...+....++..+|.+|...|++++|+.++++++.+.|....
T Consensus 195 a~~~~~~A~~~~~~al~~~~~~----------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 195 VKEALTRAVEFYQENLKLMRDL----------------GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 999999999999876542 223455789999999999999999999999999998765443
Q ss_pred ------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC
Q 035707 604 ------GWHSTGLLYEAKGLQQEALVSFRKALDAEPNH------VPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTN 671 (713)
Q Consensus 604 ------~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~ 671 (713)
++..+|.++...|++++|+..|++++.+.+.. ..++..+|.++...|+++ +|+.++++++.+.+..
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFN--TAIEYHNRHLAIAQEL 336 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHHC
Confidence 89999999999999999999999999887644 678899999999999997 9999999999875432
Q ss_pred ------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcccc
Q 035707 672 ------TTAWYNLGLLYKTYAGASALEAVECFEAAALLEE 705 (713)
Q Consensus 672 ------~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p 705 (713)
..++..+|.+|...|+ +++|..+|++++++.+
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGG--HERALKYAEQHLQLAX 374 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCC
T ss_pred CChHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHh
Confidence 4588999999999999 9999999999998764
No 40
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.91 E-value=2.4e-23 Score=214.51 Aligned_cols=279 Identities=18% Similarity=0.164 Sum_probs=239.0
Q ss_pred HHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Q 035707 396 IANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDP----YIIYHLCLENAEQRKLDVALYYAKKLLNL- 470 (713)
Q Consensus 396 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~- 470 (713)
..+...|..+ ...|++++|+..|++++ ...|.++ .++..+|.++...|++++|+.++++++..
T Consensus 6 ~~l~~~g~~~-----------~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 73 (338)
T 3ro2_A 6 LELALEGERL-----------CKSGDCRAGVSFFEAAV-QVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA 73 (338)
T ss_dssp HHHHHHHHHH-----------HHTTCHHHHHHHHHHHH-HHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----------HHhccHHHHHHHHHHHH-hhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 5677889999 88999999999999999 9999984 67889999999999999999999999887
Q ss_pred -----hcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc----HHHHHHHHHHHHHhCC--------------
Q 035707 471 -----EARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQ----GELLRTKAKLQIAQGR-------------- 527 (713)
Q Consensus 471 -----~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~~la~~~~~~g~-------------- 527 (713)
.|... .++..+|.++...|++++|+..++++++..+...+ ..++..+|.++...|+
T Consensus 74 ~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 152 (338)
T 3ro2_A 74 RTIGDQLGEA-KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFP 152 (338)
T ss_dssp HHHTCHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CC
T ss_pred hcccccHHHH-HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhh
Confidence 33334 78999999999999999999999999987542222 4488999999999999
Q ss_pred ------HHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Q 035707 528 ------LKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYS 601 (713)
Q Consensus 528 ------~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 601 (713)
+++|+..+++++...+.. ...+....++..+|.++...|++++|+.++++++.+.+..
T Consensus 153 ~~a~~~~~~A~~~~~~a~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 153 EDVRNALQAAVDLYEENLSLVTAL----------------GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhc----------------CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 999999999998875532 2234557889999999999999999999999999876543
Q ss_pred h------hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCC
Q 035707 602 A------SGWHSTGLLYEAKGLQQEALVSFRKALDAEPNH------VPSLVSIARVLRQIGGESMATIRCFLTDALRLDR 669 (713)
Q Consensus 602 ~------~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p 669 (713)
. .++..+|.++...|++++|+..+++++.+.+.. ..++..+|.++...|+++ +|+.+++++++..+
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYE--KAIDYHLKHLAIAQ 294 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHH
Confidence 3 389999999999999999999999999876654 678899999999999997 99999999998754
Q ss_pred CC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCC
Q 035707 670 TN------TTAWYNLGLLYKTYAGASALEAVECFEAAALLEESA 707 (713)
Q Consensus 670 ~~------~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~ 707 (713)
.. ..++..+|.+|...|+ +++|..+|++++++.++.
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGN--HDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHC----
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHHHHhh
Confidence 32 4588899999999999 999999999999987754
No 41
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.91 E-value=4e-23 Score=220.10 Aligned_cols=285 Identities=18% Similarity=0.143 Sum_probs=247.9
Q ss_pred CChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHH
Q 035707 353 DCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETA 432 (713)
Q Consensus 353 ~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 432 (713)
.....++.+|..+...|++. +|+.+|+++++ ..|.+......++..+|.+| ...|++++|+..|+++
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~-~A~~~~~~al~-~~~~~~~~~~~~~~~lg~~~-----------~~~g~~~~A~~~~~~a 112 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCR-AGVAFFQAAIQ-AGTEDLRTLSAIYSQLGNAY-----------FYLGDYNKAMQYHKHD 112 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHH-HCCSCHHHHHHHHHHHHHHH-----------HHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHH-HHHHHHHHHHH-hcccChhHHHHHHHHHHHHH-----------HHCCCHHHHHHHHHHH
Confidence 34566788999999999999 99999999999 78887766678999999999 8899999999999999
Q ss_pred HHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------hcCCchHHHHHHHHHHHHcCC---------
Q 035707 433 EKTM------RERDPYIIYHLCLENAEQRKLDVALYYAKKLLNL------EARSNVKGYLLLARVLSAQKQ--------- 491 (713)
Q Consensus 433 l~~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~~la~~~~~~g~--------- 491 (713)
+ .+ .|....++..+|.+|...|++++|+.++++++.. .|... .++..+|.++...|+
T Consensus 113 l-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~ 190 (411)
T 4a1s_A 113 L-TLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEG-RALYNLGNVYHAKGKHLGQRNPGK 190 (411)
T ss_dssp H-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred H-HHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHH-HHHHHHHHHHHHcCcccccccchh
Confidence 9 77 4667789999999999999999999999999988 44444 689999999999999
Q ss_pred --------HHHHHHHHHHHhhccC----CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhc
Q 035707 492 --------FADAESVINDSLDQTG----KWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNR 559 (713)
Q Consensus 492 --------~~~A~~~~~~al~~~p----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 559 (713)
+++|+.+++++++..+ .+....++..+|.++...|++++|+..|++++...+..
T Consensus 191 ~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------------- 256 (411)
T 4a1s_A 191 FGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF-------------- 256 (411)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------------
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc--------------
Confidence 9999999999987642 11345688999999999999999999999999998754
Q ss_pred ccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 035707 560 QNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYS------ASGWHSTGLLYEAKGLQQEALVSFRKALDAEP 633 (713)
Q Consensus 560 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 633 (713)
........++..+|.+|...|++++|+.+|++++.+.+.. ..++..+|.++...|++++|+.+|++++.+.+
T Consensus 257 --~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 257 --GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp --TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 1123346689999999999999999999999999887644 67889999999999999999999999998754
Q ss_pred C------CHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC
Q 035707 634 N------HVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRT 670 (713)
Q Consensus 634 ~------~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~ 670 (713)
. ...++..+|.++...|+++ +|+.++++++++.+.
T Consensus 335 ~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 335 ELGDRIGEARACWSLGNAHSAIGGHE--RALKYAEQHLQLAXX 375 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHCCH
T ss_pred HCCChHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHhh
Confidence 3 2458899999999999997 999999999998764
No 42
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.91 E-value=1.1e-22 Score=209.49 Aligned_cols=285 Identities=16% Similarity=0.169 Sum_probs=243.0
Q ss_pred hHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHH
Q 035707 355 NLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEK 434 (713)
Q Consensus 355 ~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 434 (713)
...++..|..+...|++. +|+.+|+++++ ..|.+......++..+|.++ ...|++++|+..+++++
T Consensus 5 ~~~l~~~g~~~~~~g~~~-~A~~~~~~al~-~~~~~~~~~~~~~~~l~~~~-----------~~~g~~~~A~~~~~~al- 70 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCR-AGVSFFEAAVQ-VGTEDLKTLSAIYSQLGNAY-----------FYLHDYAKALEYHHHDL- 70 (338)
T ss_dssp HHHHHHHHHHHHHTTCHH-HHHHHHHHHHH-HCCSCHHHHHHHHHHHHHHH-----------HHTTCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhccHH-HHHHHHHHHHh-hCcccHHHHHHHHHHHHHHH-----------HHcCCHHHHHHHHHHHH-
Confidence 346778899999999999 99999999999 78887766678999999999 88999999999999998
Q ss_pred hh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCc-----hHHHHHHHHHHHHcCC------------
Q 035707 435 TM------RERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSN-----VKGYLLLARVLSAQKQ------------ 491 (713)
Q Consensus 435 ~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~~la~~~~~~g~------------ 491 (713)
.. .|....++..+|.++...|++++|+..+++++...+... ..++..+|.++...|+
T Consensus 71 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 150 (338)
T 3ro2_A 71 TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGE 150 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----
T ss_pred HHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhh
Confidence 76 344577899999999999999999999999999876543 1388999999999999
Q ss_pred --------HHHHHHHHHHHhhccC----CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhc
Q 035707 492 --------FADAESVINDSLDQTG----KWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNR 559 (713)
Q Consensus 492 --------~~~A~~~~~~al~~~p----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 559 (713)
+++|+..+++++...+ .+....++..+|.++...|++++|+..+++++...+..
T Consensus 151 ~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------------- 216 (338)
T 3ro2_A 151 FPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF-------------- 216 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH--------------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--------------
Confidence 9999999999987631 11345688999999999999999999999999987753
Q ss_pred ccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 035707 560 QNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYS------ASGWHSTGLLYEAKGLQQEALVSFRKALDAEP 633 (713)
Q Consensus 560 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 633 (713)
...+....++..+|.++...|++++|+.++++++.+.+.. ..++..+|.++...|++++|+..+++++...+
T Consensus 217 --~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 217 --GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 1223346789999999999999999999999999886654 67889999999999999999999999998754
Q ss_pred CC------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC
Q 035707 634 NH------VPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTN 671 (713)
Q Consensus 634 ~~------~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~ 671 (713)
.. ..++..+|.++...|+++ +|..++++++++.+..
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHD--QAMHFAEKHLEISREV 336 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHH--HHHHHHHHHHHC----
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChH--HHHHHHHHHHHHHHhh
Confidence 32 458889999999999997 9999999999987653
No 43
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.90 E-value=1.2e-22 Score=199.22 Aligned_cols=221 Identities=14% Similarity=0.125 Sum_probs=184.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHH
Q 035707 440 DPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKA 519 (713)
Q Consensus 440 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la 519 (713)
.+..++.+|..+...|++++|+..|+++++.+|.+. .++..+|.++...|++++|+..++++++..| .+..++..+|
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la 98 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDA-IPYINFANLLSSVNELERALAFYDKALELDS--SAATAYYGAG 98 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--cchHHHHHHH
Confidence 456788999999999999999999999999999988 9999999999999999999999999999988 7889999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Q 035707 520 KLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINP 599 (713)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 599 (713)
.++...|++++|+..++++++..|.+ ..++..+|.++...|++++|+..+++++...|
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~~~----------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 156 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGMEN----------------------GDLFYMLGTVLVKLEQPKLALPYLQRAVELNE 156 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCCS----------------------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 99999999999999999999987644 78899999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 035707 600 YSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLG 679 (713)
Q Consensus 600 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg 679 (713)
.++.++..+|.++...|++++|+..|++++...|+++.++..+|.++...|+++ +|+.+++++++.+|+++.++..++
T Consensus 157 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 157 NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENRE--KALEMLDKAIDIQPDHMLALHAKK 234 (243)
T ss_dssp TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTT--HHHHHHHHHHHHCTTCHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHH--HHHHHHHHHHccCcchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998 999999999999999999999988
Q ss_pred HHHHHhCC
Q 035707 680 LLYKTYAG 687 (713)
Q Consensus 680 ~~~~~~g~ 687 (713)
.+....|+
T Consensus 235 ~l~~~~~~ 242 (243)
T 2q7f_A 235 LLGHHHHH 242 (243)
T ss_dssp C-------
T ss_pred HHHhhccC
Confidence 87665543
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.90 E-value=1.9e-22 Score=197.80 Aligned_cols=224 Identities=16% Similarity=0.168 Sum_probs=187.5
Q ss_pred CcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 035707 390 CRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLN 469 (713)
Q Consensus 390 ~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 469 (713)
..+..+.+++.+|.++ ...|++++|+..|++++ ..+|.++.+++.+|.++...|++++|+..++++++
T Consensus 18 ~~~~~~~~~~~~a~~~-----------~~~~~~~~A~~~~~~~l-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 85 (243)
T 2q7f_A 18 GSHMASMTGGQQMGRG-----------SEFGDYEKAAEAFTKAI-EENKEDAIPYINFANLLSSVNELERALAFYDKALE 85 (243)
T ss_dssp -----------------------------------CCTTHHHHH-TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHH-----------HHhhCHHHHHHHHHHHH-HhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445568899999999 78899999999999999 99999999999999999999999999999999999
Q ss_pred hhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhh
Q 035707 470 LEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSF 549 (713)
Q Consensus 470 ~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 549 (713)
..|.+. .++..+|.++...|++++|+..++++++..| .+..++..+|.++...|++++|+..+++++...|.+
T Consensus 86 ~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---- 158 (243)
T 2q7f_A 86 LDSSAA-TAYYGAGNVYVVKEMYKEAKDMFEKALRAGM--ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND---- 158 (243)
T ss_dssp HCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC----
T ss_pred cCCcch-HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc----
Confidence 999988 9999999999999999999999999999998 678899999999999999999999999999987654
Q ss_pred hhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 035707 550 SAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKAL 629 (713)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 629 (713)
..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..|++++
T Consensus 159 ------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 159 ------------------TEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp ------------------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHhc
Q 035707 630 DAEPNHVPSLVSIARVLRQIG 650 (713)
Q Consensus 630 ~~~p~~~~~~~~la~~~~~~g 650 (713)
+.+|++..++..++.+....+
T Consensus 221 ~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 221 DIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHCTTCHHHHHHHTC------
T ss_pred ccCcchHHHHHHHHHHHhhcc
Confidence 999999999998887765544
No 45
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.90 E-value=3.1e-22 Score=215.19 Aligned_cols=384 Identities=13% Similarity=0.013 Sum_probs=274.9
Q ss_pred HHhHHHHHhcCChhHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHhhcCCCCCCCcccccccccccCCchh---HHHHH
Q 035707 208 ELLPELYKLAGDPDETILSYRRALLYYWNLDIETTARIEKKFAVFLLYSGTDASPPNLRLQMELSFVPRNNI---EEAVL 284 (713)
Q Consensus 208 ~~l~~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~i~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~---eeA~~ 284 (713)
..++..+.+.|++++|+..|+++...+ +++ ....+...|...+.. ++|+.
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g-~~~--------------------------A~~~Lg~~y~~~g~~~d~~~A~~ 59 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG-YSE--------------------------AQVGLADIQVGTRDPAQIKQAEA 59 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-CCT--------------------------GGGTCC-----------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC-CHH--------------------------HHHHHHHHHHccCCCCCHHHHHH
Confidence 347888999999999999999997652 111 112233334444555 78887
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcC-----cHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHH
Q 035707 285 LLLILLKKIVLGKIEWDPSIIDHLSFALSVSG-----ELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELL 359 (713)
Q Consensus 285 ll~~~~~~~~l~~~~~~~~~~~~l~~a~~~~g-----~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~ 359 (713)
++... ... ++.++..|+.++...| ++++|..+|+++.. ++++.+++
T Consensus 60 ~~~~A-----~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~---------------------~g~~~A~~ 110 (452)
T 3e4b_A 60 TYRAA-----ADT---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFA---------------------NGEGNTLI 110 (452)
T ss_dssp -------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHH---------------------TTCSSCHH
T ss_pred HHHHH-----HhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHH---------------------CCCHHHHH
Confidence 76432 222 6778889999776665 78899999998864 35555788
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCC
Q 035707 360 VASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRER 439 (713)
Q Consensus 360 ~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~ 439 (713)
.+|.++...+... ++...++.......+.++ .+.+.||.+|...+.. ....+++..+++.+. . .
T Consensus 111 ~Lg~~y~~~~~~~-~~~~a~~~~~~a~~~g~~----~a~~~Lg~~y~~~~~~-------~~~~~~a~~~~~~a~-~---~ 174 (452)
T 3e4b_A 111 PLAMLYLQYPHSF-PNVNAQQQISQWQAAGYP----EAGLAQVLLYRTQGTY-------DQHLDDVERICKAAL-N---T 174 (452)
T ss_dssp HHHHHHHHCGGGC-TTCCHHHHHHHHHHHTCT----THHHHHHHHHHHHTCG-------GGGHHHHHHHHHHHT-T---T
T ss_pred HHHHHHHhCCCCC-CCHHHHHHHHHHHHCCCH----HHHHHHHHHHHcCCCc-------ccCHHHHHHHHHHHH-c---C
Confidence 8888887766644 434444444332334555 8999999999433322 124455666666655 3 4
Q ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHc----CCHHHHHHHHHHHhhccCCCCcH
Q 035707 440 DPYIIYHLCLENAEQR---KLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQ----KQFADAESVINDSLDQTGKWDQG 512 (713)
Q Consensus 440 ~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~ 512 (713)
++.+++.+|.+|...| ++++|+.+|+++.+..|... ..++.+|.+|... +++++|+.+|+++. | .++
T Consensus 175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a-~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~--g~~ 248 (452)
T 3e4b_A 175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTA-QRVDSVARVLGDATLGTPDEKTAQALLEKIA---P--GYP 248 (452)
T ss_dssp CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCH-HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---G--GST
T ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---C--CCH
Confidence 4559999999999999 99999999999999998877 7779999999766 79999999999998 4 678
Q ss_pred HHHHHHHHH-H--HHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCC-----CH
Q 035707 513 ELLRTKAKL-Q--IAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLS-----QW 584 (713)
Q Consensus 513 ~~~~~la~~-~--~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~ 584 (713)
.+++.+|.+ + ...+++++|+.+|+++.+.. ++.+++.+|.+|. .| ++
T Consensus 249 ~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g------------------------~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 249 ASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD------------------------QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT------------------------CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC------------------------CHHHHHHHHHHHH-cCCCCCCCH
Confidence 899999998 4 56899999999999988642 3889999999998 55 99
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-c-CCChHHHH
Q 035707 585 RDAEVCLSKSKAINPYSASGWHSTGLLYEA----KGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQI-G-GESMATIR 658 (713)
Q Consensus 585 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~-g-~~~l~~A~ 658 (713)
++|+.+|+++. +.++.+++++|.+|.. ..++++|+.+|+++.+ +.++.+.+++|.+|..- | ..+..+|.
T Consensus 304 ~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~ 378 (452)
T 3e4b_A 304 KAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAY 378 (452)
T ss_dssp HHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHH
T ss_pred HHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHH
Confidence 99999999998 8899999999999887 3499999999999987 46788999999998752 1 12345999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHcc
Q 035707 659 CFLTDALRLDRTNTTAWYNLGLLYKT--YAGASALEAVECFEAAALL 703 (713)
Q Consensus 659 ~~~~~al~~~p~~~~~~~~lg~~~~~--~g~~~~~~A~~~~~~a~~l 703 (713)
.+|+++.+.. ++.+...++.+... .++ ..+|....++....
T Consensus 379 ~~~~~A~~~g--~~~a~~~l~~l~~~~~~~~--~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 379 VFSQLAKAQD--TPEANDLATQLEAPLTPAQ--RAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHTTC--CHHHHHHHHHHHTTCCHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC--CHHHHHHHHHHHHhCCHHH--HHHHHHHHHHHHHh
Confidence 9999998864 45677777777544 334 66777777665554
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.89 E-value=1.7e-21 Score=194.96 Aligned_cols=231 Identities=19% Similarity=0.249 Sum_probs=210.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHH----cCCHHHHHHHHHHHhhccCCCCcH
Q 035707 437 RERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSA----QKQFADAESVINDSLDQTGKWDQG 512 (713)
Q Consensus 437 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~ 512 (713)
+|.++.+++.+|..+...|++++|+.+|+++++ |+++ .++..+|.++.. .+++++|+.+|+++++.+ +.
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~-~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~ 74 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKEN-SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----YS 74 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCH-HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCH-HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----CH
Confidence 478899999999999999999999999999988 6777 899999999999 999999999999999874 68
Q ss_pred HHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHH----CCCH
Q 035707 513 ELLRTKAKLQIA----QGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTS----LSQW 584 (713)
Q Consensus 513 ~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~ 584 (713)
.++..+|.++.. .+++++|+..|++++... ++.++..+|.+|.. .+++
T Consensus 75 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------------------------~~~a~~~lg~~~~~~~~~~~~~ 130 (273)
T 1ouv_A 75 NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK------------------------YAEGCASLGGIYHDGKVVTRDF 130 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------------------------CHHHHHHHHHHHHHCSSSCCCH
T ss_pred HHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC------------------------CccHHHHHHHHHHcCCCcccCH
Confidence 899999999999 999999999999998762 27899999999999 9999
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCCChHH
Q 035707 585 RDAEVCLSKSKAINPYSASGWHSTGLLYEA----KGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQ----IGGESMAT 656 (713)
Q Consensus 585 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~l~~ 656 (713)
++|+.+|+++++.. ++.+++.+|.++.. .+++++|+.+|+++++. +++.++..+|.+|.. .++++ +
T Consensus 131 ~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~--~ 204 (273)
T 1ouv_A 131 KKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFK--E 204 (273)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHH--H
T ss_pred HHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHH--H
Confidence 99999999999876 67899999999998 99999999999999987 468899999999999 88887 9
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHccccCCC
Q 035707 657 IRCFLTDALRLDRTNTTAWYNLGLLYKT----YAGASALEAVECFEAAALLEESAP 708 (713)
Q Consensus 657 A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~~~A~~~~~~a~~l~p~~~ 708 (713)
|+.+|+++++..| +.+++.+|.+|.. .++ +++|+.+|++++++.|+++
T Consensus 205 A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~--~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 205 ALARYSKACELEN--GGGCFNLGAMQYNGEGVTRN--EKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCC--STTHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccC--HHHHHHHHHHHHHcCCHHH
Confidence 9999999999866 8899999999999 999 9999999999999887643
No 47
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.89 E-value=4.7e-22 Score=186.19 Aligned_cols=173 Identities=18% Similarity=0.194 Sum_probs=144.0
Q ss_pred CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHH
Q 035707 510 DQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEV 589 (713)
Q Consensus 510 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 589 (713)
++..+|+.+|.++...|++++|++.|+++++.+|++ +.+|..+|.+|...|++++|+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~~~~~~a~~ 60 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN----------------------VETLLKLGKTYMDIGLPNDAIE 60 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----------------------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHCCCHHHHHH
Confidence 456778888888888888888888888888887655 7788888888888888888888
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCC
Q 035707 590 CLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDR 669 (713)
Q Consensus 590 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p 669 (713)
.+++++...|.++.++..+|.++...+++++|...+.+++..+|++..++..+|.++...|+++ +|+..|+++++++|
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~--~A~~~~~~~l~~~p 138 (184)
T 3vtx_A 61 SLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHD--KAIEAYEKTISIKP 138 (184)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHCT
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCch--hHHHHHHHHHHhcc
Confidence 8888888888888888888888888888888888888888888888888888888888888886 88888888888888
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCCC
Q 035707 670 TNTTAWYNLGLLYKTYAGASALEAVECFEAAALLEESAP 708 (713)
Q Consensus 670 ~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~~ 708 (713)
+++.+|+++|.+|...|+ +++|+.+|++|++++|+++
T Consensus 139 ~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 139 GFIRAYQSIGLAYEGKGL--RDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTTHHHH
T ss_pred hhhhHHHHHHHHHHHCCC--HHHHHHHHHHHHhCCccCH
Confidence 888888888888888888 8888888888888888654
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.89 E-value=3.7e-22 Score=199.73 Aligned_cols=246 Identities=11% Similarity=0.030 Sum_probs=214.2
Q ss_pred HHHhcHHHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCH
Q 035707 417 KRILKQSQALVALETAEKTMR----ERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQF 492 (713)
Q Consensus 417 ~~~~~~~~A~~~~~~al~~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~ 492 (713)
...+++++|+..|++++ ... |.++.+++.+|.++...|++++|+..|++++..+|.+. .++..+|.++...|++
T Consensus 16 ~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 16 QPTLQQEVILARMEQIL-ASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP-EVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCHHHHHHHHHHHHHH-TSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHTTCH
T ss_pred CccchHHHHHHHHHHHH-hcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHccCH
Confidence 34688999999999999 873 45678999999999999999999999999999999998 9999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHH
Q 035707 493 ADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWH 572 (713)
Q Consensus 493 ~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (713)
++|+..|+++++.+| .+..++..+|.++...|++++|+..|++++...|.+ .....
T Consensus 94 ~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~----------------------~~~~~ 149 (275)
T 1xnf_A 94 DAAYEAFDSVLELDP--TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND----------------------PFRSL 149 (275)
T ss_dssp HHHHHHHHHHHHHCT--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------------------HHHHH
T ss_pred HHHHHHHHHHHhcCc--cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC----------------------hHHHH
Confidence 999999999999998 678999999999999999999999999999997754 33333
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHH
Q 035707 573 DLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPN----HVPSLVSIARVLRQ 648 (713)
Q Consensus 573 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~----~~~~~~~la~~~~~ 648 (713)
.++ ++...|++++|+..+++++...|.+...+. ++.++...++.++|+..+++++...|. ++.++..+|.++..
T Consensus 150 ~~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 227 (275)
T 1xnf_A 150 WLY-LAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLS 227 (275)
T ss_dssp HHH-HHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHH
Confidence 333 336669999999999999999998876655 777788888999999999999987764 36889999999999
Q ss_pred hcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 035707 649 IGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECF 697 (713)
Q Consensus 649 ~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~ 697 (713)
.|+++ +|+.+|+++++.+|++... .+.++...|+ +++|++.|
T Consensus 228 ~g~~~--~A~~~~~~al~~~p~~~~~---~~~~~~~l~~--~~~a~~~~ 269 (275)
T 1xnf_A 228 LGDLD--SATALFKLAVANNVHNFVE---HRYALLELSL--LGQDQDDL 269 (275)
T ss_dssp TTCHH--HHHHHHHHHHTTCCTTCHH---HHHHHHHHHH--HHHC----
T ss_pred cCCHH--HHHHHHHHHHhCCchhHHH---HHHHHHHHHH--HHhhHHHH
Confidence 99997 9999999999999987544 4788999999 99999988
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.89 E-value=1.1e-20 Score=189.07 Aligned_cols=233 Identities=15% Similarity=0.126 Sum_probs=212.3
Q ss_pred ccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q 035707 388 GKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAE----QRKLDVALYY 463 (713)
Q Consensus 388 ~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~ 463 (713)
|.++ .+++.+|.++ ...|++++|+..|++++ . |+++.+++.+|.+|.. .+++++|+.+
T Consensus 3 ~~~~----~a~~~lg~~~-----------~~~~~~~~A~~~~~~a~-~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~ 64 (273)
T 1ouv_A 3 EQDP----KELVGLGAKS-----------YKEKDFTQAKKYFEKAC-D--LKENSGCFNLGVLYYQGQGVEKNLKKAASF 64 (273)
T ss_dssp --CH----HHHHHHHHHH-----------HHTTCHHHHHHHHHHHH-H--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred CCCh----HHHHHHHHHH-----------HhCCCHHHHHHHHHHHH-H--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHH
Confidence 4555 8999999999 78899999999999999 6 7889999999999999 9999999999
Q ss_pred HHHHHhhhcCCchHHHHHHHHHHHH----cCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHH----hCCHHHHHHHH
Q 035707 464 AKKLLNLEARSNVKGYLLLARVLSA----QKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIA----QGRLKNAIETY 535 (713)
Q Consensus 464 ~~~~l~~~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~----~g~~~~A~~~~ 535 (713)
|+++++.+ ++ .++..+|.++.. .+++++|+.+|+++++.+ +..++..+|.++.. .+++++|+..|
T Consensus 65 ~~~a~~~~--~~-~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~ 137 (273)
T 1ouv_A 65 YAKACDLN--YS-NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK----YAEGCASLGGIYHDGKVVTRDFKKAVEYF 137 (273)
T ss_dssp HHHHHHTT--CH-HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred HHHHHHCC--CH-HHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC----CccHHHHHHHHHHcCCCcccCHHHHHHHH
Confidence 99999875 56 999999999999 999999999999999873 68899999999999 99999999999
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 035707 536 VNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTS----LSQWRDAEVCLSKSKAINPYSASGWHSTGLL 611 (713)
Q Consensus 536 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 611 (713)
+++++..+ ..++..+|.+|.. .+++++|+.+|+++++.. ++.+++.+|.+
T Consensus 138 ~~a~~~~~------------------------~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~ 191 (273)
T 1ouv_A 138 TKACDLND------------------------GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNM 191 (273)
T ss_dssp HHHHHTTC------------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred HHHHhcCc------------------------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHH
Confidence 99998642 7789999999999 999999999999999874 67899999999
Q ss_pred HHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCCChHHHHHHHHHHHhhCCCCHHHH
Q 035707 612 YEA----KGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQ----IGGESMATIRCFLTDALRLDRTNTTAW 675 (713)
Q Consensus 612 ~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~l~~A~~~~~~al~~~p~~~~~~ 675 (713)
|.. .+++++|+.+|+++++..| +.++..+|.+|.. .++++ +|+.+|+++++..|+++..+
T Consensus 192 ~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~--~A~~~~~~a~~~~~~~a~~~ 259 (273)
T 1ouv_A 192 YHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEK--QAIENFKKGCKLGAKGACDI 259 (273)
T ss_dssp HHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCST--THHHHHHHHHHHTCHHHHHH
T ss_pred HHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHH--HHHHHHHHHHHcCCHHHHHH
Confidence 999 9999999999999999866 8899999999999 99998 99999999999988654433
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.89 E-value=4e-21 Score=185.73 Aligned_cols=218 Identities=13% Similarity=0.063 Sum_probs=183.8
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHH
Q 035707 436 MRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELL 515 (713)
Q Consensus 436 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 515 (713)
..|.++.+++.+|.++...|++++|+..++++++..|.+. .++..+|.++...|++++|+..+++++...| .+..++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~ 79 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNE-LAWLVRAEIYQYLKVNDKAQESFRQALSIKP--DSAEIN 79 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccch-HHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CChHHH
Confidence 4567788888899999999999999999999998888887 8888899999999999999999999988887 678888
Q ss_pred HHHHHHHHHh-CCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 035707 516 RTKAKLQIAQ-GRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKS 594 (713)
Q Consensus 516 ~~la~~~~~~-g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 594 (713)
..+|.++... |++++|+..+++++. .|. .|....++..+|.++...|++++|+.+++++
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 139 (225)
T 2vq2_A 80 NNYGWFLCGRLNRPAESMAYFDKALA-DPT-------------------YPTPYIANLNKGICSAKQGQFGLAEAYLKRS 139 (225)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHT-STT-------------------CSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHc-CcC-------------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888888 889999888888887 322 2455788888888888888888888888888
Q ss_pred HhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHH
Q 035707 595 KAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEP-NHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTT 673 (713)
Q Consensus 595 l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~ 673 (713)
++..|.++.++..+|.++...|++++|+..+++++...| ++...+..++.++...|+.+ +|..+++.+.+.+|+++.
T Consensus 140 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~a~~~~~~~~~~~p~~~~ 217 (225)
T 2vq2_A 140 LAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQ--AAYEYEAQLQANFPYSEE 217 (225)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHCTTCHH
T ss_pred HHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHH--HHHHHHHHHHHhCCCCHH
Confidence 888888888888888888888888888888888888888 88888888888888888876 888888888888888887
Q ss_pred HHHHH
Q 035707 674 AWYNL 678 (713)
Q Consensus 674 ~~~~l 678 (713)
++..+
T Consensus 218 ~~~~l 222 (225)
T 2vq2_A 218 LQTVL 222 (225)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76544
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.89 E-value=1.9e-21 Score=191.97 Aligned_cols=218 Identities=14% Similarity=0.048 Sum_probs=183.9
Q ss_pred hhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHH
Q 035707 435 TMRERD-PYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGE 513 (713)
Q Consensus 435 ~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 513 (713)
..+|.+ +.+++.+|.++...|++++|+..|+++++.+|.+. .++..+|.++...|++++|+..++++++..| .+..
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~ 106 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSA-DAHAALAVVFQTEMEPKLADEEYRKALASDS--RNAR 106 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHH
T ss_pred ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--CcHH
Confidence 445655 77888899999999999999999999998888887 8888899999999999999999999988887 6788
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 035707 514 LLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSK 593 (713)
Q Consensus 514 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 593 (713)
++..+|.++...|++++|+..|++++. .+. .|....++..+|.++...|++++|+.+|++
T Consensus 107 ~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~-------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 166 (252)
T 2ho1_A 107 VLNNYGGFLYEQKRYEEAYQRLLEASQ-DTL-------------------YPERSRVFENLGLVSLQMKKPAQAKEYFEK 166 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTT-CTT-------------------CTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh-Ccc-------------------CcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888888999999888888877 111 244578888888888888888888888888
Q ss_pred HHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHH
Q 035707 594 SKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTT 673 (713)
Q Consensus 594 al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~ 673 (713)
++...|.++.++..+|.++...|++++|+..|++++...|++..++..++.++...|+++ +|..+++++++..|+++.
T Consensus 167 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 167 SLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRD--TAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHCTTSHH
T ss_pred HHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHH--HHHHHHHHHHHHCCCCHH
Confidence 888888888888888888888888888888888888888888888888888888888886 888888888888888877
Q ss_pred HHHH
Q 035707 674 AWYN 677 (713)
Q Consensus 674 ~~~~ 677 (713)
++..
T Consensus 245 ~~~~ 248 (252)
T 2ho1_A 245 YQEF 248 (252)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 52
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.88 E-value=2.3e-21 Score=181.42 Aligned_cols=172 Identities=22% Similarity=0.253 Sum_probs=124.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHH
Q 035707 439 RDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTK 518 (713)
Q Consensus 439 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 518 (713)
+++.+|+.+|.+|...|++++|+..|+++++.+|+++ .++..+|.++...|++++|+..+.+++...| ....++..+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ 79 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNV-ETLLKLGKTYMDIGLPNDAIESLKKFVVLDT--TSAEAYYIL 79 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--hhHHHHHHH
Confidence 4556777777777777777777777777777777777 7777777777777777777777777777776 566677777
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Q 035707 519 AKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAIN 598 (713)
Q Consensus 519 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 598 (713)
|.++...++++.|+..+.+++...|.+ ..++..+|.+|...|++++|+.+|+++++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~----------------------~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~ 137 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVY----------------------ADAYYKLGLVYDSMGEHDKAIEAYEKTISIK 137 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccc----------------------hHHHHHHHHHHHHhCCchhHHHHHHHHHHhc
Confidence 777777777777777777777765543 6667777777777777777777777777777
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 035707 599 PYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNH 635 (713)
Q Consensus 599 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 635 (713)
|.++.+|+.+|.++...|++++|+..|+++++++|++
T Consensus 138 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 138 PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 7777777777777777777777777777777777654
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.88 E-value=4.3e-22 Score=199.25 Aligned_cols=253 Identities=13% Similarity=-0.041 Sum_probs=213.7
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHH
Q 035707 363 KICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPY 442 (713)
Q Consensus 363 ~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~ 442 (713)
......|++. +|+..++++++ ..+.+....+.+++.+|.++ ...|++++|+..|++++ ..+|.++.
T Consensus 13 ~~~~~~~~~~-~A~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~-----------~~~~~~~~A~~~~~~al-~~~~~~~~ 78 (275)
T 1xnf_A 13 VPLQPTLQQE-VILARMEQILA-SRALTDDERAQLLYERGVLY-----------DSLGLRALARNDFSQAL-AIRPDMPE 78 (275)
T ss_dssp CCCCCCHHHH-HHHHHHHHHHT-SSCCCHHHHHHHHHHHHHHH-----------HHTTCHHHHHHHHHHHH-HHCCCCHH
T ss_pred eccCccchHH-HHHHHHHHHHh-cccccCchhHHHHHHHHHHH-----------HHcccHHHHHHHHHHHH-HcCCCcHH
Confidence 3445567888 99999999998 43333333458999999999 88999999999999999 99999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHH
Q 035707 443 IIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQ 522 (713)
Q Consensus 443 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~ 522 (713)
+++.+|.++...|++++|+.+|+++++.+|.+. .++..+|.++...|++++|+..++++++..| .+.......+ +.
T Consensus 79 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~-~~ 154 (275)
T 1xnf_A 79 VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN-YAHLNRGIALYYGGRDKLAQDDLLAFYQDDP--NDPFRSLWLY-LA 154 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHH-HH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCcccc-HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CChHHHHHHH-HH
Confidence 999999999999999999999999999999998 9999999999999999999999999999998 5555444444 44
Q ss_pred HHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-
Q 035707 523 IAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYS- 601 (713)
Q Consensus 523 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~- 601 (713)
...|++++|+..+++++...|.+ ... ..++.++...++.++|+..+++++...|..
T Consensus 155 ~~~~~~~~A~~~~~~~~~~~~~~----------------------~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 211 (275)
T 1xnf_A 155 EQKLDEKQAKEVLKQHFEKSDKE----------------------QWG-WNIVEFYLGNISEQTLMERLKADATDNTSLA 211 (275)
T ss_dssp HHHHCHHHHHHHHHHHHHHSCCC----------------------STH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCCcc----------------------hHH-HHHHHHHHHhcCHHHHHHHHHHHhccccccc
Confidence 67799999999999999886542 223 347778888999999999999999887643
Q ss_pred ---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHH
Q 035707 602 ---ASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFL 661 (713)
Q Consensus 602 ---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~ 661 (713)
+.++..+|.++...|++++|+..|++++..+|++... .+.++...|+++ +|+..+
T Consensus 212 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~--~a~~~~ 269 (275)
T 1xnf_A 212 EHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLG--QDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHH--HC----
T ss_pred ccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHH--hhHHHH
Confidence 6889999999999999999999999999999987544 367788888886 887776
No 54
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.88 E-value=2.9e-21 Score=203.73 Aligned_cols=316 Identities=10% Similarity=-0.018 Sum_probs=240.8
Q ss_pred ChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhc--cCcchHHHHHHHH-HHHHhhcccccccHHHHHhcHHHHH----
Q 035707 354 CNLELLVASKICAENKVCIEEGITYARKALSMLQG--KCRQMASIANCLL-GVLLSSQSRSVVSDSKRILKQSQAL---- 426 (713)
Q Consensus 354 ~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~--~~~~~~~~a~~~l-g~~~~~~~~~~~~~~~~~~~~~~A~---- 426 (713)
.+...+.-...+...++.. +|..+.+.+.+..+. .+... ..++.+ ..-+. ...+.+..+.
T Consensus 11 ~v~~~l~~w~~~i~~~~~~-~A~~l~~~i~~~~~~~~~~~~~--~~y~~ll~~r~~----------~~~~~~~~~~~~~~ 77 (383)
T 3ulq_A 11 SIGEKINEWYMYIRRFSIP-DAEYLRREIKQELDQMEEDQDL--HLYYSLMEFRHN----------LMLEYLEPLEKMRI 77 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHTSCCCHHH--HHHHHHHHHHHH----------HHHHHHGGGGGSCG
T ss_pred HHHHHHHHHHHHHHHcCHH-HHHHHHHHHHHHHHhhccchHH--HHHHHHHHHHHH----------HHHhhcCccccccc
Confidence 3444555555677899999 999999998774433 23311 122211 11110 2223333443
Q ss_pred -------HHHHHHHHhhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhhh------cCCchHHHHHHHHHHH
Q 035707 427 -------VALETAEKTMRERDPY------IIYHLCLENAEQRKLDVALYYAKKLLNLE------ARSNVKGYLLLARVLS 487 (713)
Q Consensus 427 -------~~~~~al~~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~~la~~~~ 487 (713)
..+++.- . .|.... .++.+|..+...|++++|+.+|++++... +... .++..+|.++.
T Consensus 78 e~~~~~~~~~~~i~-~-~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a-~~~~~lg~~~~ 154 (383)
T 3ulq_A 78 EEQPRLSDLLLEID-K-KQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKA-EFFFKMSESYY 154 (383)
T ss_dssp GGSCCHHHHHHHHH-H-HTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHH-HHHHHHHHHHH
T ss_pred ccccchhhHHHHHH-h-cCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHH-HHHHHHHHHHH
Confidence 4454432 2 222222 34559999999999999999999999872 2233 68999999999
Q ss_pred HcCCHHHHHHHHHHHhhccCCC-----CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccC
Q 035707 488 AQKQFADAESVINDSLDQTGKW-----DQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNH 562 (713)
Q Consensus 488 ~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 562 (713)
..|++++|+..++++++..+.. ....++..+|.++...|++++|+..|++++...+.. .
T Consensus 155 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----------------~ 218 (383)
T 3ulq_A 155 YMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE----------------K 218 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----------------T
T ss_pred HcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc----------------C
Confidence 9999999999999999985422 234688999999999999999999999999997753 2
Q ss_pred CCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----cC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----
Q 035707 563 DRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKA-----IN-PYSASGWHSTGLLYEAKGLQQEALVSFRKALDAE---- 632 (713)
Q Consensus 563 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~---- 632 (713)
+.+....++.++|.+|...|++++|+.+|++++. .+ |..+.++..+|.++...|++++|+.++++++.+.
T Consensus 219 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 298 (383)
T 3ulq_A 219 QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAG 298 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC
Confidence 3345577999999999999999999999999999 45 7778899999999999999999999999999873
Q ss_pred -CCCHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccC
Q 035707 633 -PNHVPSLVSIARVLRQIGG---ESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALLEES 706 (713)
Q Consensus 633 -p~~~~~~~~la~~~~~~g~---~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~ 706 (713)
|.....+..++.++...|+ ++ +|+.++++. ...|....++..+|.+|...|+ +++|..+|++++++...
T Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~~~~--~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~--~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 299 DVIYLSEFEFLKSLYLSGPDEEAIQ--GFFDFLESK-MLYADLEDFAIDVAKYYHERKN--FQKASAYFLKVEQVRQL 371 (383)
T ss_dssp CHHHHHHHHHHHHHHTSSCCHHHHH--HHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHhCCCcHHHHH--HHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHH
Confidence 3334456779999999888 54 788888776 3334456788899999999999 99999999999987654
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.88 E-value=5.9e-21 Score=184.51 Aligned_cols=210 Identities=13% Similarity=0.054 Sum_probs=197.8
Q ss_pred hcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhh
Q 035707 471 EARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFS 550 (713)
Q Consensus 471 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 550 (713)
.|.++ .++..+|.++...|++++|+..++++++..| .+..++..+|.++...|++++|+..|++++...|.+
T Consensus 4 ~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----- 75 (225)
T 2vq2_A 4 ANQVS-NIKTQLAMEYMRGQDYRQATASIEDALKSDP--KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS----- 75 (225)
T ss_dssp CCHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred CcccH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc--cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----
Confidence 45556 8999999999999999999999999999998 678999999999999999999999999999987654
Q ss_pred hhhhhhhhcccCCCccHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHh--cCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 035707 551 AGKNLVKNRQNHDRSLEMETWHDLANVYTSL-SQWRDAEVCLSKSKA--INPYSASGWHSTGLLYEAKGLQQEALVSFRK 627 (713)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 627 (713)
..++..+|.++... |++++|+.++++++. ..|.+..++..+|.++...|++++|+..|++
T Consensus 76 -----------------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 138 (225)
T 2vq2_A 76 -----------------AEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKR 138 (225)
T ss_dssp -----------------HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -----------------hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 78999999999999 999999999999999 6676789999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccC
Q 035707 628 ALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDR-TNTTAWYNLGLLYKTYAGASALEAVECFEAAALLEES 706 (713)
Q Consensus 628 al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~ 706 (713)
+++..|+++.++..+|.++...|+++ +|+.+++++++..| +++.++..++.++...|+ .++|..+++.+.+..|+
T Consensus 139 ~~~~~~~~~~~~~~la~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~~~~~~~~~~~p~ 214 (225)
T 2vq2_A 139 SLAAQPQFPPAFKELARTKMLAGQLG--DADYYFKKYQSRVEVLQADDLLLGWKIAKALGN--AQAAYEYEAQLQANFPY 214 (225)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHTCHH--HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTT
T ss_pred HHHhCCCCchHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCc--HHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999997 99999999999999 999999999999999999 99999999999999998
Q ss_pred CCC
Q 035707 707 APV 709 (713)
Q Consensus 707 ~~~ 709 (713)
++.
T Consensus 215 ~~~ 217 (225)
T 2vq2_A 215 SEE 217 (225)
T ss_dssp CHH
T ss_pred CHH
Confidence 764
No 56
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.88 E-value=1.8e-20 Score=185.01 Aligned_cols=211 Identities=12% Similarity=-0.010 Sum_probs=199.3
Q ss_pred HHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 035707 395 SIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARS 474 (713)
Q Consensus 395 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 474 (713)
+.+++.+|.++ ...|++++|+..|++++ ..+|.++.+++.+|.++...|++++|+..++++++..|.+
T Consensus 37 ~~~~~~~a~~~-----------~~~~~~~~A~~~~~~al-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 104 (252)
T 2ho1_A 37 RDAYIQLGLGY-----------LQRGNTEQAKVPLRKAL-EIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRN 104 (252)
T ss_dssp HHHHHHHHHHH-----------HHTTCTGGGHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHH-----------HHcCChHHHHHHHHHHH-hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc
Confidence 48899999999 78888999999999999 9999999999999999999999999999999999999998
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHhh--ccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhh
Q 035707 475 NVKGYLLLARVLSAQKQFADAESVINDSLD--QTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAG 552 (713)
Q Consensus 475 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 552 (713)
. .++..+|.++...|++++|+.++++++. ..| .+..++..+|.++...|++++|+..|++++...|.+
T Consensus 105 ~-~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------- 174 (252)
T 2ho1_A 105 A-RVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYP--ERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ------- 174 (252)
T ss_dssp H-HHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCT--THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-------
T ss_pred H-HHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc-------
Confidence 8 9999999999999999999999999999 556 788899999999999999999999999999986643
Q ss_pred hhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 035707 553 KNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAE 632 (713)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 632 (713)
..++..+|.++...|++++|+.+++++++..|.+..++..++.++...|++++|...++++++..
T Consensus 175 ---------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 175 ---------------PSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp ---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 88999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHH
Q 035707 633 PNHVPSLVSI 642 (713)
Q Consensus 633 p~~~~~~~~l 642 (713)
|+++.....+
T Consensus 240 p~~~~~~~~l 249 (252)
T 2ho1_A 240 PGSLEYQEFQ 249 (252)
T ss_dssp TTSHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 9998776543
No 57
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.87 E-value=1.4e-21 Score=211.49 Aligned_cols=217 Identities=12% Similarity=0.071 Sum_probs=202.7
Q ss_pred HHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHH
Q 035707 418 RILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKL-DVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAE 496 (713)
Q Consensus 418 ~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~ 496 (713)
..+.+++++..+++.. ...|.++.+++.+|.++...|++ ++|+.+|+++++.+|++. .+|..+|.++...|++++|+
T Consensus 80 ~~~~~~~al~~l~~~~-~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~-~a~~~lg~~~~~~g~~~~A~ 157 (474)
T 4abn_A 80 VQEEMEKTLQQMEEVL-GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELV-EAWNQLGEVYWKKGDVTSAH 157 (474)
T ss_dssp HHHHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHH
Confidence 3455788999999998 99999999999999999999999 999999999999999999 99999999999999999999
Q ss_pred HHHHHHhhccCCCCcHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccH
Q 035707 497 SVINDSLDQTGKWDQGELLRTKAKLQIAQ---------GRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLE 567 (713)
Q Consensus 497 ~~~~~al~~~p~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (713)
..|+++++.+| + ..++..+|.++... |++++|+..|+++++.+|++
T Consensus 158 ~~~~~al~~~p--~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---------------------- 212 (474)
T 4abn_A 158 TCFSGALTHCK--N-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD---------------------- 212 (474)
T ss_dssp HHHHHHHTTCC--C-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC----------------------
T ss_pred HHHHHHHhhCC--C-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC----------------------
Confidence 99999999998 4 68999999999999 99999999999999997765
Q ss_pred HHHHHHHHHHHHHC--------CCHHHHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 035707 568 METWHDLANVYTSL--------SQWRDAEVCLSKSKAINP---YSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHV 636 (713)
Q Consensus 568 ~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 636 (713)
..+|..+|.+|... |++++|+.+|+++++++| .++.+|+.+|.++...|++++|+..|+++++++|++.
T Consensus 213 ~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 292 (474)
T 4abn_A 213 GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWP 292 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 88999999999999 999999999999999999 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHH
Q 035707 637 PSLVSIARVLRQIGGESMATIRCFLTD 663 (713)
Q Consensus 637 ~~~~~la~~~~~~g~~~l~~A~~~~~~ 663 (713)
.++..++.++...|+++ +|+..+.+
T Consensus 293 ~a~~~l~~~~~~lg~~~--eAi~~~~~ 317 (474)
T 4abn_A 293 EPQQREQQLLEFLSRLT--SLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHhcc
Confidence 99999999999999886 88776543
No 58
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.87 E-value=1.9e-21 Score=209.00 Aligned_cols=339 Identities=14% Similarity=0.104 Sum_probs=172.3
Q ss_pred HHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHhcCCC---hHHHHHHHHHH
Q 035707 306 DHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICAENKVC---IEEGITYARKA 382 (713)
Q Consensus 306 ~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~~g~~---~~~A~~~~~~a 382 (713)
..++..+.+.|++++|.+.|+++.. ++++.+++.+|.++...|+. . +|+.+|+++
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~---------------------~g~~~A~~~Lg~~y~~~g~~~d~~-~A~~~~~~A 64 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAE---------------------LGYSEAQVGLADIQVGTRDPAQIK-QAEATYRAA 64 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HTCCTGGGTCC-----------------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH---------------------CCCHHHHHHHHHHHHccCCCCCHH-HHHHHHHHH
Confidence 3477888899999999999999743 34555666677777777776 6 888888888
Q ss_pred HHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 035707 383 LSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALY 462 (713)
Q Consensus 383 l~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 462 (713)
++ . ++ .+++.||.++...+.. ..+++++|+..|++++ . +.++.+++.+|.+|...+...++..
T Consensus 65 ~~-~---~~----~A~~~Lg~~~~~~~~~------~~~~~~~A~~~~~~Aa-~--~g~~~A~~~Lg~~y~~~~~~~~~~~ 127 (452)
T 3e4b_A 65 AD-T---SP----RAQARLGRLLAAKPGA------TEAEHHEAESLLKKAF-A--NGEGNTLIPLAMLYLQYPHSFPNVN 127 (452)
T ss_dssp --------------CHHHHHHHHHTC--C------CHHHHHHHHHHHHHHH-H--TTCSSCHHHHHHHHHHCGGGCTTCC
T ss_pred Hh-C---CH----HHHHHHHHHHHhCCCC------CCcCHHHHHHHHHHHH-H--CCCHHHHHHHHHHHHhCCCCCCCHH
Confidence 76 2 44 6777777755322211 1246778888888877 5 3444577777777777665444443
Q ss_pred HHHHHHhhh-cCCchHHHHHHHHHHHHcCCHHHH----HHHHHHHhhccCCCCcHHHHHHHHHHHHHhC---CHHHHHHH
Q 035707 463 YAKKLLNLE-ARSNVKGYLLLARVLSAQKQFADA----ESVINDSLDQTGKWDQGELLRTKAKLQIAQG---RLKNAIET 534 (713)
Q Consensus 463 ~~~~~l~~~-p~~~~~~~~~la~~~~~~g~~~~A----~~~~~~al~~~p~~~~~~~~~~la~~~~~~g---~~~~A~~~ 534 (713)
.++...... +.++ .+++.+|.++...+.++++ ..+++.+...+| .+++.+|.++...| ++++|+.+
T Consensus 128 a~~~~~~a~~~g~~-~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~-----~a~~~Lg~~~~~~g~~~~~~~A~~~ 201 (452)
T 3e4b_A 128 AQQQISQWQAAGYP-EAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTD-----ICYVELATVYQKKQQPEQQAELLKQ 201 (452)
T ss_dssp HHHHHHHHHHHTCT-THHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT-----THHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCH-HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCH-----HHHHHHHHHHHHcCCcccHHHHHHH
Confidence 333333322 3344 6777777777777644333 333444433333 26677777777777 77777777
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhh-h---------------cccCCCccHHHHHHHHHHH-H--HHCCCHHHHHHHHHHHH
Q 035707 535 YVNLLAVLQFRKKSFSAGKNLVK-N---------------RQNHDRSLEMETWHDLANV-Y--TSLSQWRDAEVCLSKSK 595 (713)
Q Consensus 535 ~~~~l~~~~~~~~~~~~~~~~~~-~---------------~~~~~~~~~~~~~~~la~~-~--~~~g~~~~A~~~~~~al 595 (713)
|+++....+.....+.....+.. . ... +.++.+++.+|.+ + ...+++++|+.+|+++.
T Consensus 202 ~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 202 MEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGR 278 (452)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 77776665433221000000000 0 000 2234555555555 2 34555555555555555
Q ss_pred hcCCCChhHHHHHHHHHHHcC-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHhh
Q 035707 596 AINPYSASGWHSTGLLYEAKG-----LQQEALVSFRKALDAEPNHVPSLVSIARVLRQIG---GESMATIRCFLTDALRL 667 (713)
Q Consensus 596 ~~~p~~~~~~~~lg~~~~~~g-----~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~l~~A~~~~~~al~~ 667 (713)
+. .++.+++.+|.+|. .| ++++|+.+|+++. ++++.+++++|.+|.. | ..+.++|+.+|+++.+
T Consensus 279 ~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~-G~g~~~d~~~A~~~~~~Aa~- 350 (452)
T 3e4b_A 279 AA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRR-GYLGKVYPQKALDHLLTAAR- 350 (452)
T ss_dssp HT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHT-TTTSSCCHHHHHHHHHHHHT-
T ss_pred HC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHC-CCCCCcCHHHHHHHHHHHHh-
Confidence 33 24555555555555 33 5555555555555 5555555555555544 2 1122355555555554
Q ss_pred CCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHcc
Q 035707 668 DRTNTTAWYNLGLLYKT----YAGASALEAVECFEAAALL 703 (713)
Q Consensus 668 ~p~~~~~~~~lg~~~~~----~g~~~~~~A~~~~~~a~~l 703 (713)
+.++.+.++||.+|.. ..+ +.+|..+|++|.+.
T Consensus 351 -~g~~~A~~~Lg~~y~~G~g~~~d--~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 351 -NGQNSADFAIAQLFSQGKGTKPD--PLNAYVFSQLAKAQ 387 (452)
T ss_dssp -TTCTTHHHHHHHHHHSCTTBCCC--HHHHHHHHHHHHTT
T ss_pred -hChHHHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHHC
Confidence 2344555555555543 234 55555555555543
No 59
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.87 E-value=1.4e-21 Score=211.55 Aligned_cols=215 Identities=13% Similarity=0.129 Sum_probs=203.1
Q ss_pred CCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCH-HHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHH
Q 035707 455 RKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQF-ADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIE 533 (713)
Q Consensus 455 g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~ 533 (713)
+++++++..+++.....|.+. .+++.+|.++...|++ ++|+..|+++++.+| .+..++..+|.++...|++++|+.
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a-~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEA-QALMLKGKALNVTPDYSPEAEVLLSKAVKLEP--ELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCH-HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhH-HHHHHHHHHHHhccccHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 346778888888888888888 9999999999999999 999999999999999 789999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHhcCCCChhH
Q 035707 534 TYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSL---------SQWRDAEVCLSKSKAINPYSASG 604 (713)
Q Consensus 534 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~ 604 (713)
.|+++++.+| . ..++..+|.++... |++++|+.+|+++++++|+++.+
T Consensus 159 ~~~~al~~~p----------------------~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 215 (474)
T 4abn_A 159 CFSGALTHCK----------------------N-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRS 215 (474)
T ss_dssp HHHHHHTTCC----------------------C-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHhhCC----------------------C-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHH
Confidence 9999999854 2 58999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHH
Q 035707 605 WHSTGLLYEAK--------GLQQEALVSFRKALDAEP---NHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTT 673 (713)
Q Consensus 605 ~~~lg~~~~~~--------g~~~eA~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~ 673 (713)
|+.+|.++... |++++|+..|+++++++| +++.++.++|.+|...|+++ +|+..|+++++++|+++.
T Consensus 216 ~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~--~A~~~~~~al~l~p~~~~ 293 (474)
T 4abn_A 216 WYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYG--EALEGFSQAAALDPAWPE 293 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHH
Confidence 99999999999 999999999999999999 99999999999999999997 999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHH
Q 035707 674 AWYNLGLLYKTYAGASALEAVECFEA 699 (713)
Q Consensus 674 ~~~~lg~~~~~~g~~~~~~A~~~~~~ 699 (713)
++..++.++...|+ +++|+..+.+
T Consensus 294 a~~~l~~~~~~lg~--~~eAi~~~~~ 317 (474)
T 4abn_A 294 PQQREQQLLEFLSR--LTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHTTT
T ss_pred HHHHHHHHHHHHHH--HHHHHHHhcc
Confidence 99999999999999 9999987654
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=1.5e-20 Score=191.76 Aligned_cols=223 Identities=9% Similarity=0.066 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHhhhcCCchHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHhh-ccCCCCcHHHHHHHHHHH
Q 035707 458 DVALYYAKKLLNLEARSNVKGYLLLARVLSA-------QKQF-------ADAESVINDSLD-QTGKWDQGELLRTKAKLQ 522 (713)
Q Consensus 458 ~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~~~la~~~ 522 (713)
++|+..|++++..+|.++ .+|+.+|..+.. .|++ ++|+..|++++. ..| ++..+|..+|.++
T Consensus 33 ~~a~~~~~~al~~~p~~~-~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p--~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHP-DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK--KNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc--ccHHHHHHHHHHH
Confidence 456666666666666666 666666666543 3554 666666666666 455 5566666666666
Q ss_pred HHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Q 035707 523 IAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEME-TWHDLANVYTSLSQWRDAEVCLSKSKAINPYS 601 (713)
Q Consensus 523 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 601 (713)
...|++++|+..|+++++..|.+ +. +|..+|.++...|++++|+..|+++++..|.+
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 167 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDID----------------------PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR 167 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSC----------------------THHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC
T ss_pred HhcCCHHHHHHHHHHHHhccccC----------------------ccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Confidence 66666666666666666654422 33 66666666666666666666666666666666
Q ss_pred hhHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh---CC-CCHHHHH
Q 035707 602 ASGWHSTGLLYEA-KGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRL---DR-TNTTAWY 676 (713)
Q Consensus 602 ~~~~~~lg~~~~~-~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~---~p-~~~~~~~ 676 (713)
..+|...+.+... .|++++|+..|+++++.+|+++.+|..++.++...|+++ +|+..|++++.. .| +...+|.
T Consensus 168 ~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~--~A~~~~~~al~~~~l~p~~~~~l~~ 245 (308)
T 2ond_A 168 HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDN--NTRVLFERVLTSGSLPPEKSGEIWA 245 (308)
T ss_dssp THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHH--HHHHHHHHHHHSSSSCGGGCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhccCCCHHHHHHHHH
Confidence 6666555544332 566667777777766666666666666666666666665 666667666664 33 2556666
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHccccCCCC
Q 035707 677 NLGLLYKTYAGASALEAVECFEAAALLEESAPV 709 (713)
Q Consensus 677 ~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~~~ 709 (713)
.++..+...|+ +++|..+++++++..|+++.
T Consensus 246 ~~~~~~~~~g~--~~~a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 246 RFLAFESNIGD--LASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp HHHHHHHHHSC--HHHHHHHHHHHHHHTTTTTS
T ss_pred HHHHHHHHcCC--HHHHHHHHHHHHHHcccccc
Confidence 66666666666 66777777776666666543
No 61
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=3.7e-20 Score=188.73 Aligned_cols=258 Identities=11% Similarity=0.054 Sum_probs=218.1
Q ss_pred HHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhc-------ccccccHHHHHhcHHHHHHHHHHHHHh-hCCCCHHHHH
Q 035707 374 EGITYARKALSMLQGKCRQMASIANCLLGVLLSSQ-------SRSVVSDSKRILKQSQALVALETAEKT-MRERDPYIIY 445 (713)
Q Consensus 374 ~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~al~~-~~p~~~~~~~ 445 (713)
+|+..|++++. ..|.++ .+|+.+|..+... |+. ....+.+++|+..|++++ . ++|++..+|.
T Consensus 34 ~a~~~~~~al~-~~p~~~----~~w~~~~~~~~~~~~~l~~~g~~----~~~~~~~~~A~~~~~rAl-~~~~p~~~~~~~ 103 (308)
T 2ond_A 34 RVMFAYEQCLL-VLGHHP----DIWYEAAQYLEQSSKLLAEKGDM----NNAKLFSDEAANIYERAI-STLLKKNMLLYF 103 (308)
T ss_dssp HHHHHHHHHHH-HHTTCH----HHHHHHHHHHHHHHHHHHHTSCC----HHHHHHHHHHHHHHHHHH-TTTTTTCHHHHH
T ss_pred HHHHHHHHHHH-HcCCCH----HHHHHHHHHHHHhchhhhhccch----hhcccchHHHHHHHHHHH-HHhCcccHHHHH
Confidence 89999999999 899999 9999999988422 211 012233599999999999 8 7999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHH
Q 035707 446 HLCLENAEQRKLDVALYYAKKLLNLEARSNVK-GYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIA 524 (713)
Q Consensus 446 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~ 524 (713)
.+|..+...|++++|...|+++++..|.++ . +|..++.++...|++++|+.+|+++++..| ....++...+.+...
T Consensus 104 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~~a~~~~~ 180 (308)
T 2ond_A 104 AYADYEESRMKYEKVHSIYNRLLAIEDIDP-TLVYIQYMKFARRAEGIKSGRMIFKKAREDAR--TRHHVYVTAALMEYY 180 (308)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSSSSCT-HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT--CCTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccccCc-cHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHH
Confidence 999999999999999999999999999988 6 999999999999999999999999999988 556677666666443
Q ss_pred -hCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CC-
Q 035707 525 -QGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAI---NP- 599 (713)
Q Consensus 525 -~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p- 599 (713)
.|++++|+..|+++++..|++ +.+|..++.++...|++++|+.+|++++.. .|
T Consensus 181 ~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~ 238 (308)
T 2ond_A 181 CSKDKSVAFKIFELGLKKYGDI----------------------PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp TSCCHHHHHHHHHHHHHHHTTC----------------------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred HcCCHHHHHHHHHHHHHhCCCc----------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHH
Confidence 699999999999999998765 899999999999999999999999999996 45
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 035707 600 YSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLG 679 (713)
Q Consensus 600 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg 679 (713)
....+|..++..+...|++++|...++++++..|++..... ++.+ ..++ +.+.++|+++.++..||
T Consensus 239 ~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~~-~~~~---~~r~----------~~l~~~P~~~~~ln~lg 304 (308)
T 2ond_A 239 KSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKE-TALL---VDRY----------KFMDLYPCSASELKALG 304 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCH-HHHH---HTTT----------CBTTBCSSCHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccch-HHHH---HHHH----------HhcccCCCCHHHHHhcC
Confidence 36789999999999999999999999999999998653321 1111 1222 45678999999988877
Q ss_pred H
Q 035707 680 L 680 (713)
Q Consensus 680 ~ 680 (713)
.
T Consensus 305 Y 305 (308)
T 2ond_A 305 Y 305 (308)
T ss_dssp C
T ss_pred C
Confidence 3
No 62
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.86 E-value=8.4e-19 Score=199.35 Aligned_cols=342 Identities=11% Similarity=0.076 Sum_probs=274.0
Q ss_pred hHHHHHhcCChhHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHhhcCCCCCCCcccccccccccCCchhHHHHHHHHHH
Q 035707 210 LPELYKLAGDPDETILSYRRALLYYWNLDIETTARIEKKFAVFLLYSGTDASPPNLRLQMELSFVPRNNIEEAVLLLLIL 289 (713)
Q Consensus 210 l~~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~i~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~eeA~~ll~~~ 289 (713)
+|.++...|.++||+..|+++... + .. ...++ ...+++++|+.+..
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~~----~-~A--------~~VLi-------------------e~i~nldrAiE~Ae-- 1100 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDVN----T-SA--------VQVLI-------------------EHIGNLDRAYEFAE-- 1100 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCH----H-HH--------HHHHH-------------------HHHhhHHHHHHHHH--
Confidence 678899999999999999998421 0 00 01111 12356777776642
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHhcC
Q 035707 290 LKKIVLGKIEWDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICAENK 369 (713)
Q Consensus 290 ~~~~~l~~~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~~g 369 (713)
-...+.+|..+|.++...|++++|++.|+++ +++..+...+..+.+.|
T Consensus 1101 --------rvn~p~vWsqLAKAql~~G~~kEAIdsYiKA------------------------dD~say~eVa~~~~~lG 1148 (1630)
T 1xi4_A 1101 --------RCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA------------------------DDPSSYMEVVQAANTSG 1148 (1630)
T ss_pred --------hcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc------------------------CChHHHHHHHHHHHHcC
Confidence 1257999999999999999999999999874 67888899999999999
Q ss_pred CChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 035707 370 VCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCL 449 (713)
Q Consensus 370 ~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~ 449 (713)
++. +|++++..+.+ ..+. + .+...+|.+| .+.+++++ ++.| + . ..+...+..+|.
T Consensus 1149 kyE-EAIeyL~mArk-~~~e-~----~Idt~LafaY-----------AKl~rlee-le~f---I-~--~~n~ad~~~iGd 1203 (1630)
T 1xi4_A 1149 NWE-ELVKYLQMARK-KARE-S----YVETELIFAL-----------AKTNRLAE-LEEF---I-N--GPNNAHIQQVGD 1203 (1630)
T ss_pred CHH-HHHHHHHHHHh-hccc-c----cccHHHHHHH-----------HhhcCHHH-HHHH---H-h--CCCHHHHHHHHH
Confidence 999 99999999998 4433 2 3344599999 66666664 4443 3 1 234567778999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHH
Q 035707 450 ENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLK 529 (713)
Q Consensus 450 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~ 529 (713)
.+...|+|++|+.+|.++ ..|..++.++.++|++++|++.++++ .+..+|...+.++...|++.
T Consensus 1204 ~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1204 RCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred HHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhhhhHHH
Confidence 999999999999999985 58889999999999999999999998 35678999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 035707 530 NAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTG 609 (713)
Q Consensus 530 ~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 609 (713)
.|..+... +..+ ++.+..++..|...|.|++|+.++++++.++|.+...+..+|
T Consensus 1268 LA~~cgl~-Iiv~-------------------------~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELa 1321 (1630)
T 1xi4_A 1268 LAQMCGLH-IVVH-------------------------ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELA 1321 (1630)
T ss_pred HHHHHHHh-hhcC-------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHH
Confidence 99988775 3332 555668999999999999999999999999999999999999
Q ss_pred HHHHHc--CCHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHh------------hCCC
Q 035707 610 LLYEAK--GLQQEALVSFRKALDAEP-----NHVPSLVSIARVLRQIGGESMATIRCFLTDALR------------LDRT 670 (713)
Q Consensus 610 ~~~~~~--g~~~eA~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~------------~~p~ 670 (713)
.+|.+- ++..++++.|...+.+.| +....|..+..+|.+.|+++ .|+....+... ..+.
T Consensus 1322 iLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~d--nA~~tm~~h~~~a~~~~~Fk~~i~kv~ 1399 (1630)
T 1xi4_A 1322 ILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD--NAIITMMNHPTDAWKEGQFKDIITKVA 1399 (1630)
T ss_pred HHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHH--HHHHHHHhccHhhhhhHHHHHHhcccc
Confidence 888764 477889999998888777 77889999999999999998 78744433322 2577
Q ss_pred CHHHHHHHHHHHHHhC
Q 035707 671 NTTAWYNLGLLYKTYA 686 (713)
Q Consensus 671 ~~~~~~~lg~~~~~~g 686 (713)
+++.++.....|...+
T Consensus 1400 n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1400 NVELYYRAIQFYLEFK 1415 (1630)
T ss_pred cHHHHHHHHHHHHhhC
Confidence 8999999988888766
No 63
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.86 E-value=3.2e-21 Score=196.58 Aligned_cols=251 Identities=18% Similarity=0.144 Sum_probs=199.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------hcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc--
Q 035707 437 RERDPYIIYHLCLENAEQRKLDVALYYAKKLLNL--------EARSNVKGYLLLARVLSAQKQFADAESVINDSLDQT-- 506 (713)
Q Consensus 437 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 506 (713)
+|....++..+|.++...|++++|+.+++++++. .|... .++..+|.++...|++++|+.++++++...
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVA-TMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4556788999999999999999999999999985 44445 789999999999999999999999999873
Q ss_pred ----CCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCC
Q 035707 507 ----GKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLS 582 (713)
Q Consensus 507 ----p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 582 (713)
..+....++..+|.++...|++++|+..|++++...... .....+....++..+|.++...|
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--------------~~~~~~~~~~~~~~la~~~~~~~ 167 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV--------------LGKDHPDVAKQLNNLALLCQNQG 167 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH--------------HCTTCHHHHHHHHHHHHHHHTTT
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh--------------cCCCChHHHHHHHHHHHHHHHcC
Confidence 222567789999999999999999999999999885321 11233566889999999999999
Q ss_pred CHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---------CCH------HHH
Q 035707 583 QWRDAEVCLSKSKAI--------NPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEP---------NHV------PSL 639 (713)
Q Consensus 583 ~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p---------~~~------~~~ 639 (713)
++++|+.+|++++.. .|....++..+|.++...|++++|+..|++++...| ... ..+
T Consensus 168 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (311)
T 3nf1_A 168 KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEER 247 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH
Confidence 999999999999988 666678899999999999999999999999997532 222 233
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccC
Q 035707 640 VSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALLEES 706 (713)
Q Consensus 640 ~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~ 706 (713)
...+..+...+.+. +|...+.++....|..+.++..+|.+|...|+ +++|..+|++++++.|+
T Consensus 248 ~~~~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 248 EECKGKQKDGTSFG--EYGGWYKACKVDSPTVTTTLKNLGALYRRQGK--FEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHC-------CCSC--CCC---------CHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHC-
T ss_pred HHhcCchhhHHHHH--HHHHHHhhcCCCCchHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHhhc
Confidence 34445555566666 78888999998899999999999999999999 99999999999999875
No 64
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.86 E-value=9.2e-20 Score=176.99 Aligned_cols=219 Identities=11% Similarity=0.063 Sum_probs=189.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHH
Q 035707 438 ERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEA-RSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLR 516 (713)
Q Consensus 438 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 516 (713)
+.++..++.+|.++...|++++|+..|+++++.+| .+. .+++.+|.++...|++++|+..|+++++.+| .+..++.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~ 80 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS-VTAYNCGVCADNIKKYKEAADYFDIAIKKNY--NLANAYI 80 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC--SHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc-HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc--chHHHHH
Confidence 56789999999999999999999999999999998 777 8999999999999999999999999999999 7899999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 035707 517 TKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKA 596 (713)
Q Consensus 517 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 596 (713)
.+|.++...|++++|+..|++++...|++...+ .....+|..+|.++...|++++|+.+|+++++
T Consensus 81 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~---------------~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 81 GKSAAYRDMKNNQEYIATLTEGIKAVPGNATIE---------------KLYAIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH---------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHH---------------HHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 999999999999999999999999988652110 11237799999999999999999999999999
Q ss_pred cCCC--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHH
Q 035707 597 INPY--SASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTA 674 (713)
Q Consensus 597 ~~p~--~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~ 674 (713)
++|+ ++.++..+|.++...| ...++++..+.+.....+. +......+.++ +|+.+|+++++++|+++.+
T Consensus 146 ~~p~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~--~A~~~~~~a~~l~p~~~~~ 216 (228)
T 4i17_A 146 VTSKKWKTDALYSLGVLFYNNG-----ADVLRKATPLASSNKEKYA--SEKAKADAAFK--KAVDYLGEAVTLSPNRTEI 216 (228)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHH-----HHHHHHHGGGTTTCHHHHH--HHHHHHHHHHH--HHHHHHHHHHHHCTTCHHH
T ss_pred cCCCcccHHHHHHHHHHHHHHH-----HHHHHHHHhcccCCHHHHH--HHHHHHHHHHH--HHHHHHHHHhhcCCCCHHH
Confidence 9999 8999999999997655 4456777777777655443 34445566666 9999999999999999999
Q ss_pred HHHHHHHHH
Q 035707 675 WYNLGLLYK 683 (713)
Q Consensus 675 ~~~lg~~~~ 683 (713)
+..++.+..
T Consensus 217 ~~~l~~i~~ 225 (228)
T 4i17_A 217 KQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 988887754
No 65
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.85 E-value=1.4e-20 Score=211.41 Aligned_cols=171 Identities=18% Similarity=0.220 Sum_probs=126.7
Q ss_pred CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHH
Q 035707 510 DQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEV 589 (713)
Q Consensus 510 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 589 (713)
++..++.++|.++..+|++++|++.|+++++++|++ ..+|.++|.+|..+|++++|+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~----------------------~~a~~nLg~~l~~~g~~~eA~~ 64 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF----------------------AAAHSNLASVLQQQGKLQEALM 64 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC----------------------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHcCCHHHHHH
Confidence 566777777777777777777777777777776544 6777777777777777777777
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCC
Q 035707 590 CLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDR 669 (713)
Q Consensus 590 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p 669 (713)
+|+++++++|+++.+|+++|.++..+|++++|++.|+++++++|+++.++.++|.+|..+|+++ +|+..|+++++++|
T Consensus 65 ~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~--eAi~~~~~Al~l~P 142 (723)
T 4gyw_A 65 HYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP--EAIASYRTALKLKP 142 (723)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHCS
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCC
Confidence 7777777777777777777777777777777777777777777777777777777777777775 77777777777777
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccC
Q 035707 670 TNTTAWYNLGLLYKTYAGASALEAVECFEAAALLEES 706 (713)
Q Consensus 670 ~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~ 706 (713)
+++.++.++|.++...|+ +++|.+.|++++++.|+
T Consensus 143 ~~~~a~~~L~~~l~~~g~--~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 143 DFPDAYCNLAHCLQIVCD--WTDYDERMKKLVSIVAD 177 (723)
T ss_dssp CCHHHHHHHHHHHHHTTC--CTTHHHHHHHHHHHHHH
T ss_pred CChHHHhhhhhHHHhccc--HHHHHHHHHHHHHhChh
Confidence 777777777777777777 77777777777766554
No 66
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.84 E-value=5.5e-18 Score=192.72 Aligned_cols=377 Identities=14% Similarity=0.099 Sum_probs=276.9
Q ss_pred hHHHHHhcCChhHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHhhcCCCCCCCcccccccccccCCchhHHHHHHHHHH
Q 035707 210 LPELYKLAGDPDETILSYRRALLYYWNLDIETTARIEKKFAVFLLYSGTDASPPNLRLQMELSFVPRNNIEEAVLLLLIL 289 (713)
Q Consensus 210 l~~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~i~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~eeA~~ll~~~ 289 (713)
....|+..|.+.+|+..|++++..+..... ...++..++...++. ..++..+.+..+
T Consensus 991 ~vKaf~~aglp~EaieLLEKivl~~s~fs~--n~~LqnlLi~tAIka------------------D~~Rv~eyI~kL--- 1047 (1630)
T 1xi4_A 991 TVKAFMTADLPNELIELLEKIVLDNSVFSE--HRNLQNLLILTAIKA------------------DRTRVMEYINRL--- 1047 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHcCCCcccc--cHHHHHHHHHHHHHh------------------ChhhHHHHHHHh---
Confidence 345677999999999999999965221111 111122222222222 112222222211
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCc-hhhHHHHHHHhhcc----cCCCChHHHHHHHHH
Q 035707 290 LKKIVLGKIEWDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGN-KKRYCTLALCYLGE----ENSDCNLELLVASKI 364 (713)
Q Consensus 290 ~~~~~l~~~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~-~~~~~~la~~~~~~----~~p~~~~~~~~~a~~ 364 (713)
+......++..+...|++++|...|++.- .+.. ...+......+.++ ...+.+..|+.+|+.
T Consensus 1048 -----------d~~d~~eIA~Iai~lglyEEAf~IYkKa~--~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKA 1114 (1630)
T 1xi4_A 1048 -----------DNYDAPDIANIAISNELFEEAFAIFRKFD--VNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKA 1114 (1630)
T ss_pred -----------hhccHHHHHHHHHhCCCHHHHHHHHHHcC--CHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHH
Confidence 11112336667777777777777777752 1111 11122111111111 446778999999999
Q ss_pred HHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHH
Q 035707 365 CAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYII 444 (713)
Q Consensus 365 ~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~ 444 (713)
+...|++. +|+..|.++ +++ ..+..+|.++ .+.|++++|+++|..+. +..++ +.+-
T Consensus 1115 ql~~G~~k-EAIdsYiKA------dD~----say~eVa~~~-----------~~lGkyEEAIeyL~mAr-k~~~e-~~Id 1170 (1630)
T 1xi4_A 1115 QLQKGMVK-EAIDSYIKA------DDP----SSYMEVVQAA-----------NTSGNWEELVKYLQMAR-KKARE-SYVE 1170 (1630)
T ss_pred HHhCCCHH-HHHHHHHhc------CCh----HHHHHHHHHH-----------HHcCCHHHHHHHHHHHH-hhccc-cccc
Confidence 99999999 999999765 455 8888899999 89999999999999999 77643 3334
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHH
Q 035707 445 YHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIA 524 (713)
Q Consensus 445 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~ 524 (713)
..+|.+|.+.+++++ ++.| + ...+. ..+..+|..+...|+|++|..+|.++ ..|..++.++..
T Consensus 1171 t~LafaYAKl~rlee-le~f---I--~~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvk 1233 (1630)
T 1xi4_A 1171 TELIFALAKTNRLAE-LEEF---I--NGPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVH 1233 (1630)
T ss_pred HHHHHHHHhhcCHHH-HHHH---H--hCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHH
Confidence 469999999999885 4444 2 23344 67778999999999999999999885 357889999999
Q ss_pred hCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhH
Q 035707 525 QGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASG 604 (713)
Q Consensus 525 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 604 (713)
+|++++|++.++++.. ..+|...+.++...|++..|..+... +.. +++.
T Consensus 1234 Lge~q~AIEaarKA~n---------------------------~~aWkev~~acve~~Ef~LA~~cgl~-Iiv---~~de 1282 (1630)
T 1xi4_A 1234 LGEYQAAVDGARKANS---------------------------TRTWKEVCFACVDGKEFRLAQMCGLH-IVV---HADE 1282 (1630)
T ss_pred hCCHHHHHHHHHHhCC---------------------------HHHHHHHHHHHhhhhHHHHHHHHHHh-hhc---CHHH
Confidence 9999999999998722 68999999999999999999998875 433 4566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCC-----CCHHHHHHHH
Q 035707 605 WHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDR-----TNTTAWYNLG 679 (713)
Q Consensus 605 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p-----~~~~~~~~lg 679 (713)
+..++..|...|.+++|+.++++++.++|.+...+..++.++.+-.--.+-+++++|...+.+.| .+...|..+.
T Consensus 1283 Leeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv 1362 (1630)
T 1xi4_A 1283 LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV 1362 (1630)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHH
Confidence 66889999999999999999999999999999999999999887654434488888888887766 6788999999
Q ss_pred HHHHHhCCCCHHHHHHH
Q 035707 680 LLYKTYAGASALEAVEC 696 (713)
Q Consensus 680 ~~~~~~g~~~~~~A~~~ 696 (713)
.+|.+-|+ ++.|+..
T Consensus 1363 ~LY~~~~e--~dnA~~t 1377 (1630)
T 1xi4_A 1363 FLYDKYEE--YDNAIIT 1377 (1630)
T ss_pred HHHHhccc--HHHHHHH
Confidence 99999999 9999943
No 67
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.84 E-value=5.5e-19 Score=171.51 Aligned_cols=210 Identities=11% Similarity=0.066 Sum_probs=185.9
Q ss_pred HHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 035707 396 IANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRE-RDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARS 474 (713)
Q Consensus 396 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 474 (713)
.+++.+|.++ ...|++++|+..|++++ ..+| .+..+++.+|.++...|++++|+..|+++++.+|++
T Consensus 8 ~~~~~~g~~~-----------~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 75 (228)
T 4i17_A 8 NQLKNEGNDA-----------LNAKNYAVAFEKYSEYL-KLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL 75 (228)
T ss_dssp HHHHHHHHHH-----------HHTTCHHHHHHHHHHHH-HHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH
T ss_pred HHHHHHHHHH-----------HHccCHHHHHHHHHHHH-hccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch
Confidence 8999999999 88999999999999999 9998 899999999999999999999999999999999998
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhh
Q 035707 475 NVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQG-------ELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKK 547 (713)
Q Consensus 475 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 547 (713)
. .++..+|.++..+|++++|+..++++++..| .+. .++..+|.++...|++++|+..|+++++.+|++
T Consensus 76 ~-~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-- 150 (228)
T 4i17_A 76 A-NAYIGKSAAYRDMKNNQEYIATLTEGIKAVP--GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKK-- 150 (228)
T ss_dssp H-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHH--
T ss_pred H-HHHHHHHHHHHHcccHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCc--
Confidence 8 9999999999999999999999999999999 566 669999999999999999999999999986650
Q ss_pred hhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 035707 548 SFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRK 627 (713)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 627 (713)
..+.+|..+|.+|...| ...++++..+.+.+...+ .+......+.+++|+..|++
T Consensus 151 ------------------~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~ 205 (228)
T 4i17_A 151 ------------------WKTDALYSLGVLFYNNG-----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGE 205 (228)
T ss_dssp ------------------HHHHHHHHHHHHHHHHH-----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------ccHHHHHHHHHHHHHHH-----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 03899999999997654 456777888877665444 34455667889999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHH
Q 035707 628 ALDAEPNHVPSLVSIARVLR 647 (713)
Q Consensus 628 al~~~p~~~~~~~~la~~~~ 647 (713)
+++++|+++.++..++.+..
T Consensus 206 a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 206 AVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHCTTCHHHHHHHHHHHT
T ss_pred HhhcCCCCHHHHHHHHHHHH
Confidence 99999999999888877653
No 68
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.84 E-value=3.4e-19 Score=187.38 Aligned_cols=240 Identities=11% Similarity=0.007 Sum_probs=201.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC------CchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC-----Cc
Q 035707 443 IIYHLCLENAEQRKLDVALYYAKKLLNLEAR------SNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKW-----DQ 511 (713)
Q Consensus 443 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~ 511 (713)
.++.+|..+...|++++|+..|++++...+. .. .++..+|.++...|++++|+..++++++..+.. ..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a-~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKA-EFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 5677999999999999999999999987432 23 688999999999999999999999999875421 23
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHH
Q 035707 512 GELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCL 591 (713)
Q Consensus 512 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 591 (713)
..++..+|.++...|++++|++.|++++...+.. ...+....++.++|.+|...|++++|+.+|
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~----------------~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI----------------QNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5578899999999999999999999999986532 222345788999999999999999999999
Q ss_pred HHHHh-----cCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHhcC---CChHHHH
Q 035707 592 SKSKA-----INPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAE-----PNHVPSLVSIARVLRQIGG---ESMATIR 658 (713)
Q Consensus 592 ~~al~-----~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~---~~l~~A~ 658 (713)
++++. .+|..+.++..+|.++...|++++|+.++++++.+. |.....+..++.++...++ +. +|+
T Consensus 246 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~--~al 323 (378)
T 3q15_A 246 QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIH--DLL 323 (378)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHH--HHH
T ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHH--HHH
Confidence 99999 778788899999999999999999999999999974 3344556677777777776 44 788
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccc
Q 035707 659 CFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALLE 704 (713)
Q Consensus 659 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~ 704 (713)
.++++. ...|.....+..+|.+|...|+ +++|..+|++++++.
T Consensus 324 ~~~~~~-~~~~~~~~~~~~la~~y~~~g~--~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 324 SYFEKK-NLHAYIEACARSAAAVFESSCH--FEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHT-TCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHH
T ss_pred HHHHhC-CChhHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHH
Confidence 777762 2234445678899999999999 999999999998754
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.83 E-value=1.9e-19 Score=189.68 Aligned_cols=243 Identities=13% Similarity=0.081 Sum_probs=203.8
Q ss_pred HHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhC---C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 035707 396 IANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMR---E---RDPYIIYHLCLENAEQRKLDVALYYAKKLLN 469 (713)
Q Consensus 396 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~---p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 469 (713)
..++.+|..+ ...|++++|+..|++++ .+. + ....+++.+|.+|...|++++|+.+++++++
T Consensus 104 ~~~~~~g~~~-----------~~~g~~~~A~~~~~~al-~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~ 171 (383)
T 3ulq_A 104 YFNFFRGMYE-----------LDQREYLSAIKFFKKAE-SKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYE 171 (383)
T ss_dssp HHHHHHHHHH-----------HHTTCHHHHHHHHHHHH-TTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----------HHhcCHHHHHHHHHHHH-HHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566789999 88999999999999999 762 2 2457899999999999999999999999999
Q ss_pred hhcCCc------hHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCC----cHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 035707 470 LEARSN------VKGYLLLARVLSAQKQFADAESVINDSLDQTGKWD----QGELLRTKAKLQIAQGRLKNAIETYVNLL 539 (713)
Q Consensus 470 ~~p~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l 539 (713)
..+... ..++..+|.++..+|++++|+..++++++..+... ...++..+|.++...|++++|+..|++++
T Consensus 172 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 251 (383)
T 3ulq_A 172 IYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAI 251 (383)
T ss_dssp HHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 865543 14889999999999999999999999998854222 23588999999999999999999999999
Q ss_pred HHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CCChhHHHHHHHHHHH
Q 035707 540 AVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAIN-----PYSASGWHSTGLLYEA 614 (713)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~~ 614 (713)
.+.+.. ...|..+.++..+|.+|...|++++|+.++++++.+. |.....+..+|.++..
T Consensus 252 ~~~~~~----------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~ 315 (383)
T 3ulq_A 252 AVFEES----------------NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLS 315 (383)
T ss_dssp HHHHHT----------------TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTS
T ss_pred HHHHhh----------------ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 986532 2225668999999999999999999999999999874 3333446779999999
Q ss_pred cCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCC
Q 035707 615 KGL---QQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDR 669 (713)
Q Consensus 615 ~g~---~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p 669 (713)
.|+ +++|+..+++. ...|....++..+|.+|...|+++ +|..++++++++..
T Consensus 316 ~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~--~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 316 GPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQ--KASAYFLKVEQVRQ 370 (383)
T ss_dssp SCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHHHH
Confidence 999 88888888876 334455678889999999999997 99999999998643
No 70
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.83 E-value=6.7e-20 Score=205.75 Aligned_cols=165 Identities=17% Similarity=0.252 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 035707 477 KGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLV 556 (713)
Q Consensus 477 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 556 (713)
.++..+|.++..+|++++|+..|+++++++| ++..++.++|.++..+|++++|++.|+++++++|++
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P--~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~----------- 76 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFP--EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF----------- 76 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------
Confidence 4455555555555555555555555555544 444455555555555555555555555555554333
Q ss_pred hhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 035707 557 KNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHV 636 (713)
Q Consensus 557 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 636 (713)
+.+|+++|.+|..+|++++|+.+|+++++++|+++.+++++|.++...|++++|+..|+++++++|+++
T Consensus 77 -----------~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~ 145 (723)
T 4gyw_A 77 -----------ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFP 145 (723)
T ss_dssp -----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH
T ss_pred -----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 455555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 035707 637 PSLVSIARVLRQIGGESMATIRCFLTDALRL 667 (713)
Q Consensus 637 ~~~~~la~~~~~~g~~~l~~A~~~~~~al~~ 667 (713)
.++.++|.++...|+++ +|++.+++++++
T Consensus 146 ~a~~~L~~~l~~~g~~~--~A~~~~~kal~l 174 (723)
T 4gyw_A 146 DAYCNLAHCLQIVCDWT--DYDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHHHHTTCCT--THHHHHHHHHHH
T ss_pred HHHhhhhhHHHhcccHH--HHHHHHHHHHHh
Confidence 55555555555555555 555555555544
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.82 E-value=9.5e-20 Score=185.57 Aligned_cols=264 Identities=15% Similarity=0.100 Sum_probs=195.2
Q ss_pred cCCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhc---cCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHH
Q 035707 350 ENSDCNLELLVASKICAENKVCIEEGITYARKALSMLQG---KCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQAL 426 (713)
Q Consensus 350 ~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~---~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~ 426 (713)
.+|....++..+|.++...|++. +|+.+++++++.... .+......++..+|.++ ...|++++|+
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~-----------~~~g~~~~A~ 89 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYE-VAVPLCKQALEDLEKTSGHDHPDVATMLNILALVY-----------RDQNKYKDAA 89 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-----------HHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-----------HHCCCHHHHH
Confidence 45777889999999999999999 999999999984221 12234458899999999 8889999999
Q ss_pred HHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh--------cCCchHHHHHHHHHHHHcC
Q 035707 427 VALETAEKTM--------RERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLE--------ARSNVKGYLLLARVLSAQK 490 (713)
Q Consensus 427 ~~~~~al~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~~la~~~~~~g 490 (713)
..|++++ .. .|....++..+|.++...|++++|+.+++++++.. |... .++..+|.++...|
T Consensus 90 ~~~~~al-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~-~~~~~la~~~~~~~ 167 (311)
T 3nf1_A 90 NLLNDAL-AIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVA-KQLNNLALLCQNQG 167 (311)
T ss_dssp HHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHH-HHHHHHHHHHHTTT
T ss_pred HHHHHHH-HHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHH-HHHHHHHHHHHHcC
Confidence 9999999 77 35567789999999999999999999999999875 4444 68999999999999
Q ss_pred CHHHHHHHHHHHhhc------cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCC
Q 035707 491 QFADAESVINDSLDQ------TGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDR 564 (713)
Q Consensus 491 ~~~~A~~~~~~al~~------~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (713)
++++|+.+++++++. ...+....++..+|.++...|++++|+..|++++...+........ ......
T Consensus 168 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~ 240 (311)
T 3nf1_A 168 KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD-------DENKPI 240 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-------------CCH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC-------cchHHH
Confidence 999999999999987 1122567789999999999999999999999999986643100000 000000
Q ss_pred ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 035707 565 SLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPN 634 (713)
Q Consensus 565 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 634 (713)
......+..++..+...+.+.+|...++++....|..+.++..+|.+|...|++++|+.+|++++++.|.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 241 WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1123444555555666677777777888888777878888888888888888888888888888877664
No 72
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.82 E-value=2.6e-18 Score=171.66 Aligned_cols=223 Identities=10% Similarity=0.049 Sum_probs=205.5
Q ss_pred CHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcC--CHHHHHHHHHHHhhccCCCCcHHHHHHHHHHH----HHh---C
Q 035707 456 KLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQK--QFADAESVINDSLDQTGKWDQGELLRTKAKLQ----IAQ---G 526 (713)
Q Consensus 456 ~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~----~~~---g 526 (713)
..++|+..+.+++.++|++. .+|+..+.++...+ ++++++..++.++..+| .+..+|...+.++ ... +
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~-taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP--k~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 48 YSERALHITELGINELASHY-TIWIYRFNILKNLPNRNLYDELDWCEEIALDNE--KNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT--TCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHHCcHHH-HHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc--ccHHHHHHHHHHHHHHHHhccccC
Confidence 33689999999999999999 99999999999999 99999999999999999 6788888888888 666 7
Q ss_pred CHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhcCCCChhH
Q 035707 527 RLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWR--DAEVCLSKSKAINPYSASG 604 (713)
Q Consensus 527 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~p~~~~~ 604 (713)
+++++++.+.+++..+|.+ ..+|...+.+....|.++ +++.+++++++.+|.+..+
T Consensus 125 ~~~~EL~~~~~~l~~~pkn----------------------y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sA 182 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPKN----------------------HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSA 182 (306)
T ss_dssp CTHHHHHHHHHHHHHCTTC----------------------HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHH
T ss_pred CHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHH
Confidence 8999999999999998766 999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHcCC------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhC---CCCHHHH
Q 035707 605 WHSTGLLYEAKGL------QQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLD---RTNTTAW 675 (713)
Q Consensus 605 ~~~lg~~~~~~g~------~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~---p~~~~~~ 675 (713)
|+..+.+....+. ++++++++++++..+|++..+|+.++.++...|+.. ++...+..+++.++ |.++.++
T Consensus 183 W~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~al 261 (306)
T 3dra_A 183 WSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSI-TQLEEFSLQFVDLEKDQVTSSFAL 261 (306)
T ss_dssp HHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCG-GGGHHHHHTTEEGGGTEESCHHHH
T ss_pred HHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCCh-HHHHHHHHHHHhccCCCCCCHHHH
Confidence 9999999999887 999999999999999999999999999999999975 45677888888776 8899999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHc-cccC
Q 035707 676 YNLGLLYKTYAGASALEAVECFEAAAL-LEES 706 (713)
Q Consensus 676 ~~lg~~~~~~g~~~~~~A~~~~~~a~~-l~p~ 706 (713)
..++.+|.+.|+ .++|+++|+.+.+ ++|-
T Consensus 262 ~~la~~~~~~~~--~~~A~~~~~~l~~~~Dpi 291 (306)
T 3dra_A 262 ETLAKIYTQQKK--YNESRTVYDLLKSKYNPI 291 (306)
T ss_dssp HHHHHHHHHTTC--HHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHccCC--HHHHHHHHHHHHhccChH
Confidence 999999999999 9999999999986 7774
No 73
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.82 E-value=7.6e-19 Score=174.41 Aligned_cols=199 Identities=15% Similarity=0.044 Sum_probs=167.1
Q ss_pred hhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhh
Q 035707 470 LEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQ---GELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRK 546 (713)
Q Consensus 470 ~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 546 (713)
..|.++ ..++.+|..+...|++++|+..|+++++..| .+ ..+++.+|.++...|++++|+..|++++...|++
T Consensus 10 ~~~~~~-~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~- 85 (261)
T 3qky_A 10 LRHSSP-QEAFERAMEFYNQGKYDRAIEYFKAVFTYGR--THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID- 85 (261)
T ss_dssp -CCSSH-HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS--CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-
T ss_pred CCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC-
Confidence 456666 7777888888888888888888888887776 44 6788888888888888888888888888887654
Q ss_pred hhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHhcCCCChhHH-------------
Q 035707 547 KSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTS--------LSQWRDAEVCLSKSKAINPYSASGW------------- 605 (713)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~------------- 605 (713)
+....+++.+|.++.. .|++++|+..|++++...|+++.+.
T Consensus 86 ------------------~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~ 147 (261)
T 3qky_A 86 ------------------PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKL 147 (261)
T ss_dssp ------------------TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred ------------------chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHH
Confidence 4557889999999999 9999999999999999999987766
Q ss_pred ----HHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHh----------cCCChHHHHHHHHHHHhhC
Q 035707 606 ----HSTGLLYEAKGLQQEALVSFRKALDAEPN---HVPSLVSIARVLRQI----------GGESMATIRCFLTDALRLD 668 (713)
Q Consensus 606 ----~~lg~~~~~~g~~~eA~~~~~~al~~~p~---~~~~~~~la~~~~~~----------g~~~l~~A~~~~~~al~~~ 668 (713)
+.+|.+|...|++++|+..|++++...|+ .+.++..+|.+|... |+++ +|+..|+++++..
T Consensus 148 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~--~A~~~~~~~~~~~ 225 (261)
T 3qky_A 148 ARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYR--RAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHH--HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHH--HHHHHHHHHHHHC
Confidence 88899999999999999999999999998 467999999999987 6666 9999999999999
Q ss_pred CCCH---HHHHHHHHHHHHhCCCCHHHHH
Q 035707 669 RTNT---TAWYNLGLLYKTYAGASALEAV 694 (713)
Q Consensus 669 p~~~---~~~~~lg~~~~~~g~~~~~~A~ 694 (713)
|+++ .+...++.++...++ ++++.
T Consensus 226 p~~~~~~~a~~~l~~~~~~~~~--~~~~~ 252 (261)
T 3qky_A 226 PDSPLLRTAEELYTRARQRLTE--LEGDA 252 (261)
T ss_dssp TTCTHHHHHHHHHHHHHHHHHH--HHTCT
T ss_pred CCChHHHHHHHHHHHHHHHHHH--hhhhh
Confidence 9985 456677888888777 66543
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.81 E-value=7.7e-18 Score=176.68 Aligned_cols=280 Identities=16% Similarity=0.095 Sum_probs=225.3
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccC-cchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHH
Q 035707 356 LELLVASKICAENKVCIEEGITYARKALSMLQGKC-RQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEK 434 (713)
Q Consensus 356 ~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~-~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 434 (713)
......|.++...|++. +|+.++++++. ..|.+ ......++..+|.++ ...|++++|+..+++++
T Consensus 15 ~~~~~~a~~~~~~g~~~-~A~~~~~~al~-~~~~~~~~~~~~~~~~l~~~~-----------~~~g~~~~A~~~~~~al- 80 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPD-EAERLAKLALE-ELPPGWFYSRIVATSVLGEVL-----------HCKGELTRSLALMQQTE- 80 (373)
T ss_dssp HHHHHHHHHHHHTTCHH-HHHHHHHHHHH-TCCTTCHHHHHHHHHHHHHHH-----------HHHTCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHH-HHHHHHHHHHH-cCCCCchhHHHHHHHHHHHHH-----------HhcCcHHHHHHHHHHHH-
Confidence 45677888999999999 99999999999 44443 333456788999999 78899999999999999
Q ss_pred hhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC--------CchHHHHHHHHHHHHcCCHHHHHHHHH
Q 035707 435 TMRERDP------YIIYHLCLENAEQRKLDVALYYAKKLLNLEAR--------SNVKGYLLLARVLSAQKQFADAESVIN 500 (713)
Q Consensus 435 ~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--------~~~~~~~~la~~~~~~g~~~~A~~~~~ 500 (713)
.+.|... .++..+|.++...|++++|+..+++++...+. .. .++..+|.++...|++++|...++
T Consensus 81 ~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~ 159 (373)
T 1hz4_A 81 QMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE-FLVRIRAQLLWAWARLDEAEASAR 159 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH-HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHH-HHHHHHHHHHHHhcCHHHHHHHHH
Confidence 8765432 34688999999999999999999999987632 22 567789999999999999999999
Q ss_pred HHhhccCCCC---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHH--HHHHHH
Q 035707 501 DSLDQTGKWD---QGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEME--TWHDLA 575 (713)
Q Consensus 501 ~al~~~p~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~la 575 (713)
+++...+... ...++..+|.++...|++++|...+++++...+.. ..+.... ....++
T Consensus 160 ~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~-----------------~~~~~~~~~~~~~~~ 222 (373)
T 1hz4_A 160 SGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG-----------------KYHSDWISNANKVRV 222 (373)
T ss_dssp HHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS-----------------CCCHHHHHHHHHHHH
T ss_pred HHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-----------------CcchhHHHHHHHHHH
Confidence 9998875321 34678899999999999999999999999885421 0111111 122455
Q ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHH
Q 035707 576 NVYTSLSQWRDAEVCLSKSKAINPYS----ASGWHSTGLLYEAKGLQQEALVSFRKALDAEPN------HVPSLVSIARV 645 (713)
Q Consensus 576 ~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~------~~~~~~~la~~ 645 (713)
.++...|++++|...+++++...|.. ...+..++.++...|++++|...+++++...+. ...++..++.+
T Consensus 223 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~ 302 (373)
T 1hz4_A 223 IYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQL 302 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHH
Confidence 66889999999999999999877653 235678999999999999999999999876432 22478889999
Q ss_pred HHHhcCCChHHHHHHHHHHHhhCC
Q 035707 646 LRQIGGESMATIRCFLTDALRLDR 669 (713)
Q Consensus 646 ~~~~g~~~l~~A~~~~~~al~~~p 669 (713)
+...|+++ +|...+++++.+.+
T Consensus 303 ~~~~g~~~--~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 303 YWQAGRKS--DAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHTCHH--HHHHHHHHHHHHHH
T ss_pred HHHhCCHH--HHHHHHHHHHHHhc
Confidence 99999987 99999999998654
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.81 E-value=7.9e-18 Score=176.60 Aligned_cols=281 Identities=15% Similarity=0.063 Sum_probs=228.7
Q ss_pred hHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHH
Q 035707 393 MASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPY-----IIYHLCLENAEQRKLDVALYYAKKL 467 (713)
Q Consensus 393 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~-----~~~~la~~~~~~g~~~~A~~~~~~~ 467 (713)
....++..+|.++ ...|++++|+..+++++ ...|.+.. ++..+|.++...|++++|...++++
T Consensus 12 ~~~~~~~~~a~~~-----------~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 79 (373)
T 1hz4_A 12 MHAEFNALRAQVA-----------INDGNPDEAERLAKLAL-EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT 79 (373)
T ss_dssp HHHHHHHHHHHHH-----------HHTTCHHHHHHHHHHHH-HTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----------HHCCCHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3457778888888 78899999999999999 87765532 6788999999999999999999999
Q ss_pred HhhhcCCc-----hHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCC------CCcHHHHHHHHHHHHHhCCHHHHHHHHH
Q 035707 468 LNLEARSN-----VKGYLLLARVLSAQKQFADAESVINDSLDQTGK------WDQGELLRTKAKLQIAQGRLKNAIETYV 536 (713)
Q Consensus 468 l~~~p~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~la~~~~~~g~~~~A~~~~~ 536 (713)
+...|... ..++..+|.++...|++++|+..+++++...+. +....++..+|.++...|++++|...++
T Consensus 80 l~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 159 (373)
T 1hz4_A 80 EQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 159 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99876543 124678999999999999999999999987521 1345677889999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--ChhHHH-----HHH
Q 035707 537 NLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPY--SASGWH-----STG 609 (713)
Q Consensus 537 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~-----~lg 609 (713)
+++...+.. ..+....++..+|.++...|++++|..++++++.+.+. .+..+. .++
T Consensus 160 ~al~~~~~~-----------------~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 222 (373)
T 1hz4_A 160 SGIEVLSSY-----------------QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRV 222 (373)
T ss_dssp HHHHHTTTS-----------------CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred HHHHHhhcc-----------------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHH
Confidence 999987642 11224678889999999999999999999999876432 222222 344
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC------CHHHHHHHH
Q 035707 610 LLYEAKGLQQEALVSFRKALDAEPNH----VPSLVSIARVLRQIGGESMATIRCFLTDALRLDRT------NTTAWYNLG 679 (713)
Q Consensus 610 ~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~------~~~~~~~lg 679 (713)
.++...|++++|...+++++...|.. ...+..++.++...|+++ +|...+++++...+. ...++..+|
T Consensus 223 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~l~~a~~~~~~~~~~~~~~~~~~~la 300 (373)
T 1hz4_A 223 IYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFE--PAEIVLEELNENARSLRLMSDLNRNLLLLN 300 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 56889999999999999999877653 335788999999999997 999999999876432 124788899
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHccccC
Q 035707 680 LLYKTYAGASALEAVECFEAAALLEES 706 (713)
Q Consensus 680 ~~~~~~g~~~~~~A~~~~~~a~~l~p~ 706 (713)
.++...|+ +++|..+|++++.+.+.
T Consensus 301 ~~~~~~g~--~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 301 QLYWQAGR--KSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHTC--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCC--HHHHHHHHHHHHHHhcc
Confidence 99999999 99999999999987653
No 76
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.81 E-value=1.6e-18 Score=171.97 Aligned_cols=212 Identities=16% Similarity=0.110 Sum_probs=177.2
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC---chHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC-C
Q 035707 435 TMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARS---NVKGYLLLARVLSAQKQFADAESVINDSLDQTGKW-D 510 (713)
Q Consensus 435 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~ 510 (713)
...|.++..++.+|..+...|++++|+..|+++++..|++ . .+++.+|.++..+|++++|+..|+++++..|.. .
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~-~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAA-DAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchH-HHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 5678899999999999999999999999999999999998 6 899999999999999999999999999998732 4
Q ss_pred cHHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCC
Q 035707 511 QGELLRTKAKLQIA--------QGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLS 582 (713)
Q Consensus 511 ~~~~~~~la~~~~~--------~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 582 (713)
...+++.+|.++.. .|++++|+..|++++...|++.........+.. ........++.+|.+|...|
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~-----~~~~~~~~~~~la~~~~~~g 162 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRE-----LRAKLARKQYEAARLYERRE 162 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHcc
Confidence 56789999999999 999999999999999999876433221111100 00112334589999999999
Q ss_pred CHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHH
Q 035707 583 QWRDAEVCLSKSKAINPYS---ASGWHSTGLLYEAK----------GLQQEALVSFRKALDAEPNHV---PSLVSIARVL 646 (713)
Q Consensus 583 ~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~----------g~~~eA~~~~~~al~~~p~~~---~~~~~la~~~ 646 (713)
++++|+..|+++++..|++ +.+++.+|.+|... |++++|+..|+++++..|+++ .+...++.++
T Consensus 163 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~ 242 (261)
T 3qky_A 163 LYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRAR 242 (261)
T ss_dssp CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 9999999999999999984 56899999999977 899999999999999999985 4556667777
Q ss_pred HHhcCC
Q 035707 647 RQIGGE 652 (713)
Q Consensus 647 ~~~g~~ 652 (713)
...+++
T Consensus 243 ~~~~~~ 248 (261)
T 3qky_A 243 QRLTEL 248 (261)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666654
No 77
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.80 E-value=8.5e-19 Score=167.37 Aligned_cols=187 Identities=13% Similarity=0.113 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHH
Q 035707 512 GELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCL 591 (713)
Q Consensus 512 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 591 (713)
...+...|..+...|++++|+..|++++..+|++...+.... ........+.....+|.+|...|++++|+..|
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 77 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTN------VDKNSEISSKLATELALAYKKNRNYDKAYLFY 77 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHH------SCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhh------hcchhhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 444556666666666666666666666666655422211100 00001112344455999999999999999999
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC
Q 035707 592 SKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTN 671 (713)
Q Consensus 592 ~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~ 671 (713)
+++++++|+++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.+|...|+.+...+...+.+++...| .
T Consensus 78 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 156 (208)
T 3urz_A 78 KELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-M 156 (208)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-H
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-h
Confidence 999999999999999999999999999999999999999999999999999999988876543467777877764332 2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCC
Q 035707 672 TTAWYNLGLLYKTYAGASALEAVECFEAAALLEESA 707 (713)
Q Consensus 672 ~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~ 707 (713)
..+++.+|.++...|+ +++|+.+|+++++++|++
T Consensus 157 ~~a~~~~g~~~~~~~~--~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 157 QYARYRDGLSKLFTTR--YEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHHT--HHHHHHHHHHHTTTSCCH
T ss_pred hHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCH
Confidence 3478899999999999 999999999999999974
No 78
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.80 E-value=1.4e-18 Score=175.49 Aligned_cols=243 Identities=13% Similarity=0.054 Sum_probs=190.0
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--C-CHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 035707 424 QALVALETAEKTMRERDPYIIYHLCLENAEQ--R-KLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVIN 500 (713)
Q Consensus 424 ~A~~~~~~al~~~~p~~~~~~~~la~~~~~~--g-~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~ 500 (713)
+|.+++.++- +.-+.....+ .++.. . ++++|+..|+++ |.++...|++++|+..|+
T Consensus 3 ~a~~~~~~a~-k~~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~ 61 (292)
T 1qqe_A 3 DPVELLKRAE-KKGVPSSGFM-----KLFSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFL 61 (292)
T ss_dssp CHHHHHHHHH-HHSSCCCTHH-----HHHSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHH
T ss_pred cHHHHHHHHH-HHhCcCCCcc-----hhcCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHH
Confidence 4667777777 5544432222 11222 2 488888888876 456788999999999999
Q ss_pred HHhhccCCC----CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHH
Q 035707 501 DSLDQTGKW----DQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLAN 576 (713)
Q Consensus 501 ~al~~~p~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 576 (713)
+++++.+.. ....++..+|.++...|++++|+..|++++.+.+.. ........++..+|.
T Consensus 62 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~----------------g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 62 KAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR----------------GQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHH
Confidence 999885311 225688999999999999999999999999998753 122334678999999
Q ss_pred HHHHC-CCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-------HHHHH
Q 035707 577 VYTSL-SQWRDAEVCLSKSKAINPYS------ASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVP-------SLVSI 642 (713)
Q Consensus 577 ~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~-------~~~~l 642 (713)
+|... |++++|+.+|++++++.|.+ ..++..+|.++..+|++++|+..|++++.+.|++.. ++.++
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 99996 99999999999999998754 467899999999999999999999999999887643 67899
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhhCCCCHHH-----HHHHHHHHH--HhCCCCHHHHHHHHHHHHccccCC
Q 035707 643 ARVLRQIGGESMATIRCFLTDALRLDRTNTTA-----WYNLGLLYK--TYAGASALEAVECFEAAALLEESA 707 (713)
Q Consensus 643 a~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~-----~~~lg~~~~--~~g~~~~~~A~~~~~~a~~l~p~~ 707 (713)
|.++...|+++ +|+.+|+++++++|+.... +..++..+. ..++ +++|+..|++++.++|.+
T Consensus 206 g~~~~~~g~~~--~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~--~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 206 GLCQLAATDAV--AAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ--LSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHTTCHH--HHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT--HHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHcCCHH--HHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHH--HHHHHHHhccCCccHHHH
Confidence 99999999997 9999999999999987653 445666664 4678 999999999999988754
No 79
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.80 E-value=1.1e-17 Score=167.01 Aligned_cols=231 Identities=9% Similarity=-0.042 Sum_probs=214.0
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhhcCCchHHHHHHHHHH----HHc---CCHH
Q 035707 423 SQALVALETAEKTMRERDPYIIYHLCLENAEQR--KLDVALYYAKKLLNLEARSNVKGYLLLARVL----SAQ---KQFA 493 (713)
Q Consensus 423 ~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~----~~~---g~~~ 493 (713)
++|+..+.+++ .++|++..+|+..+.++...| ++++++..+..++..+|.+. .+|+..+.++ ... ++++
T Consensus 50 ~~aL~~t~~~L-~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y-~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGI-NELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY-QIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHH-HHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC-HHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHH-HHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH-HHHHHHHHHHHHHHHhccccCCHH
Confidence 78999999999 999999999999999999999 99999999999999999999 9999999999 777 8999
Q ss_pred HHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHH
Q 035707 494 DAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLK--NAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETW 571 (713)
Q Consensus 494 ~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (713)
+++..++++++.+| .+..+|...+.+....|.++ ++++.++++++.+|.+ ..+|
T Consensus 128 ~EL~~~~~~l~~~p--kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N----------------------~sAW 183 (306)
T 3dra_A 128 REFDILEAMLSSDP--KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN----------------------NSAW 183 (306)
T ss_dssp HHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC----------------------HHHH
T ss_pred HHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCC----------------------HHHH
Confidence 99999999999999 78999999999999999998 9999999999998766 8999
Q ss_pred HHHHHHHHHCCC------HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHH-HHHHHHHHHhcC---CCCHHHHHH
Q 035707 572 HDLANVYTSLSQ------WRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQE-ALVSFRKALDAE---PNHVPSLVS 641 (713)
Q Consensus 572 ~~la~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~e-A~~~~~~al~~~---p~~~~~~~~ 641 (713)
...+.+....++ ++++++++++++..+|.+..+|+.++.++...|+..+ ....+.+++.++ |.++.++..
T Consensus 184 ~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~ 263 (306)
T 3dra_A 184 SHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALET 263 (306)
T ss_dssp HHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHH
T ss_pred HHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHH
Confidence 999999999987 9999999999999999999999999999999998655 445777777766 889999999
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHh-hCCCCHHHHHHHHHH
Q 035707 642 IARVLRQIGGESMATIRCFLTDALR-LDRTNTTAWYNLGLL 681 (713)
Q Consensus 642 la~~~~~~g~~~l~~A~~~~~~al~-~~p~~~~~~~~lg~~ 681 (713)
++.++.+.|+.+ +|+++|+.+.+ .+|-....|...+..
T Consensus 264 la~~~~~~~~~~--~A~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 264 LAKIYTQQKKYN--ESRTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHHTTCHH--HHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHHccCCHH--HHHHHHHHHHhccChHHHHHHHHHHhh
Confidence 999999999986 99999999997 799999999887654
No 80
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.79 E-value=1.4e-18 Score=196.48 Aligned_cols=188 Identities=13% Similarity=0.015 Sum_probs=174.0
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------hhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 035707 435 TMRERDPYIIYHLCLENAEQRKLDVALYYAKKLL--------NLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQT 506 (713)
Q Consensus 435 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l--------~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 506 (713)
..+|+++.+++..+ ...|++++|+..+++++ +.+|++. .++..+|.++..+|++++|+..|+++++.+
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 463 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESV-ELPLMEVRALLDLGDVAKATRKLDDLAERV 463 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCS-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccch-hHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Confidence 45788888888777 78999999999999999 8889998 999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHH
Q 035707 507 GKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRD 586 (713)
Q Consensus 507 p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 586 (713)
| ++..+++.+|.++...|++++|++.|+++++.+|++ ..+|..+|.++...|++++
T Consensus 464 p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~----------------------~~~~~~lg~~~~~~g~~~~ 519 (681)
T 2pzi_A 464 G--WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE----------------------LAPKLALAATAELAGNTDE 519 (681)
T ss_dssp C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC----------------------SHHHHHHHHHHHHHTCCCT
T ss_pred c--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------hHHHHHHHHHHHHcCChHH
Confidence 9 789999999999999999999999999999998765 8899999999999999999
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 035707 587 AEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGG 651 (713)
Q Consensus 587 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 651 (713)
+..|+++++++|+++.+++++|.++...|++++|+..|+++++++|++..++.++|.++...++
T Consensus 520 -~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 520 -HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp -TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred -HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999999999999999999999999999999999987666
No 81
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.79 E-value=4.9e-19 Score=159.17 Aligned_cols=147 Identities=12% Similarity=0.139 Sum_probs=133.3
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 035707 517 TKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKA 596 (713)
Q Consensus 517 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 596 (713)
.+|.++...|++++|++.+++++...|++ +..++.+|.+|...|++++|+.+|+++++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~----------------------~~~~~~la~~y~~~~~~~~A~~~~~~al~ 59 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQK----------------------SIKGFYFAKLYYEAKEYDLAKKYICTYIN 59 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHH----------------------HTTHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCccc----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 36778888999999999999998887655 78899999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHH-HHHHHHhhCCCCHHHH
Q 035707 597 INPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRC-FLTDALRLDRTNTTAW 675 (713)
Q Consensus 597 ~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~-~~~~al~~~p~~~~~~ 675 (713)
++|+++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++...|+++ +|.. +++++++++|+++.++
T Consensus 60 ~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~--~aa~~~~~~al~l~P~~~~~~ 137 (150)
T 4ga2_A 60 VQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTD--GRAKYWVERAAKLFPGSPAVY 137 (150)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSS--SHHHHHHHHHHHHSTTCHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH--HHHHHHHHHHHHhCcCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999987 5554 5699999999999999
Q ss_pred HHHHHHHHHhCC
Q 035707 676 YNLGLLYKTYAG 687 (713)
Q Consensus 676 ~~lg~~~~~~g~ 687 (713)
..++.++...|+
T Consensus 138 ~l~~~ll~~~G~ 149 (150)
T 4ga2_A 138 KLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHTCCC
T ss_pred HHHHHHHHHhCc
Confidence 999999988886
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.79 E-value=1.8e-17 Score=174.25 Aligned_cols=260 Identities=12% Similarity=0.030 Sum_probs=207.0
Q ss_pred HHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCC------CCHHHHHHHHHH
Q 035707 377 TYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRE------RDPYIIYHLCLE 450 (713)
Q Consensus 377 ~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p------~~~~~~~~la~~ 450 (713)
..++.+-....+.+.......++.+|..+ ...|++++|+..|++++ .+.+ ....+++.+|.+
T Consensus 83 ~~l~~i~~~~~~~~~~l~~~~~~~~g~~~-----------~~~g~~~~A~~~~~~al-~~~~~~~~~~~~a~~~~~lg~~ 150 (378)
T 3q15_A 83 ELLETIETPQKKLTGLLKYYSLFFRGMYE-----------FDQKEYVEAIGYYREAE-KELPFVSDDIEKAEFHFKVAEA 150 (378)
T ss_dssp HHHHHHHGGGHHHHHHHHHHHHHHHHHHH-----------HHTTCHHHHHHHHHHHH-TTGGGCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHH-----------HHHCCHHHHHHHHHHHH-HHHhhCCChHHHHHHHHHHHHH
Confidence 55555433122222323345678889998 78999999999999999 7642 235688999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhhcCCc------hHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC----CcHHHHHHHHH
Q 035707 451 NAEQRKLDVALYYAKKLLNLEARSN------VKGYLLLARVLSAQKQFADAESVINDSLDQTGKW----DQGELLRTKAK 520 (713)
Q Consensus 451 ~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~la~ 520 (713)
|...|+++.|+.++++++...+... ..++..+|.++...|++++|+..|+++++..+.. ....++..+|.
T Consensus 151 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 230 (378)
T 3q15_A 151 YYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIAN 230 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999998765422 2578899999999999999999999999874211 23457889999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Q 035707 521 LQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPY 600 (713)
Q Consensus 521 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 600 (713)
++...|++++|+..|++++...+.. ..|..+.++..+|.++...|++++|+.++++++.+.+.
T Consensus 231 ~y~~~~~~~~A~~~~~~al~~~~~~-----------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 231 SYDRSGDDQMAVEHFQKAAKVSREK-----------------VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHH-----------------CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhh-----------------CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999975432 22445889999999999999999999999999998543
Q ss_pred -----ChhHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhC
Q 035707 601 -----SASGWHSTGLLYEAKGL---QQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLD 668 (713)
Q Consensus 601 -----~~~~~~~lg~~~~~~g~---~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~ 668 (713)
....+..++.++...++ +.+|+..+++. ...|.....+..+|.+|...|+++ +|..+|+++++..
T Consensus 294 ~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~--~A~~~~~~al~~~ 366 (378)
T 3q15_A 294 RSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFE--QAAAFYRKVLKAQ 366 (378)
T ss_dssp TCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHHH
Confidence 34456778888888888 88888888772 233444567889999999999997 9999999998753
No 83
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.78 E-value=7.4e-19 Score=198.63 Aligned_cols=200 Identities=14% Similarity=0.051 Sum_probs=176.7
Q ss_pred hhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHh--------hccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 035707 469 NLEARSNVKGYLLLARVLSAQKQFADAESVINDSL--------DQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLA 540 (713)
Q Consensus 469 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 540 (713)
..+|+++ .+++..+ ...|++++|+..+++++ +.+| .+..++..+|.++...|++++|+..|+++++
T Consensus 388 ~~~p~~~-~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p--~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 461 (681)
T 2pzi_A 388 LVDPTDV-AASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFS--ESVELPLMEVRALLDLGDVAKATRKLDDLAE 461 (681)
T ss_dssp CCCTTST-THHHHHH---TTTCCHHHHHHHHHHHHTC-------CCT--TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCCCCc-chHHhhc---ccccCHHHHHHHHHHhhhhcccccccccc--cchhHHHHHHHHHHhcCCHHHHHHHHHHHhc
Confidence 3567777 6776666 78899999999999999 7778 7888999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHH
Q 035707 541 VLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQE 620 (713)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~e 620 (713)
.+|++ ..+|+.+|.++...|++++|+..|+++++++|+++.+++++|.++...|++++
T Consensus 462 ~~p~~----------------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~ 519 (681)
T 2pzi_A 462 RVGWR----------------------WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE 519 (681)
T ss_dssp HHCCC----------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT
T ss_pred cCcch----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH
Confidence 98765 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHH
Q 035707 621 ALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEA-VECFEA 699 (713)
Q Consensus 621 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A-~~~~~~ 699 (713)
+..|+++++++|+++.+++++|.++...|+++ +|+..|+++++++|++..+|+++|.++...|+ .+++ ...+++
T Consensus 520 -~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~--~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~ 594 (681)
T 2pzi_A 520 -HKFYQTVWSTNDGVISAAFGLARARSAEGDRV--GAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS--TSEVTEEQIRD 594 (681)
T ss_dssp -TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--HHHHHHHTSCTTSTTHHHHHHHHHHHTC---------CCHHHHHH
T ss_pred -HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHH--HHHHHHHhhcccCcccHHHHHHHHHHHHccCC--CCCCCHHHHHH
Confidence 99999999999999999999999999999997 99999999999999999999999999977655 4444 333443
Q ss_pred HH
Q 035707 700 AA 701 (713)
Q Consensus 700 a~ 701 (713)
|+
T Consensus 595 A~ 596 (681)
T 2pzi_A 595 AA 596 (681)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.78 E-value=9.5e-18 Score=169.33 Aligned_cols=229 Identities=14% Similarity=0.049 Sum_probs=181.9
Q ss_pred cHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC-----chHHHHHHHHHHHHcCCHHHH
Q 035707 421 KQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARS-----NVKGYLLLARVLSAQKQFADA 495 (713)
Q Consensus 421 ~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~~la~~~~~~g~~~~A 495 (713)
++++|+..|+++. .+|...|++++|+.+|++++.+.+.. ...++..+|.++..+|++++|
T Consensus 32 ~~~~A~~~~~~a~---------------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQAA---------------TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHHH---------------HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 5799999998875 46788999999999999999985432 126899999999999999999
Q ss_pred HHHHHHHhhccCCCCc----HHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHH
Q 035707 496 ESVINDSLDQTGKWDQ----GELLRTKAKLQIAQ-GRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMET 570 (713)
Q Consensus 496 ~~~~~~al~~~p~~~~----~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (713)
+.+|++++++.+...+ ..++..+|.++... |++++|+..|++++.+.|.. ........+
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~----------------~~~~~~~~~ 160 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD----------------QSVALSNKC 160 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT----------------TCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC----------------CChHHHHHH
Confidence 9999999998753222 45789999999996 99999999999999998753 111223678
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh-------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH-----
Q 035707 571 WHDLANVYTSLSQWRDAEVCLSKSKAINPYSAS-------GWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPS----- 638 (713)
Q Consensus 571 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~----- 638 (713)
+..+|.++..+|++++|+.+|++++.+.|.+.. ++..+|.++...|++++|+..|++++.++|++...
T Consensus 161 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~ 240 (292)
T 1qqe_A 161 FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNF 240 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 999999999999999999999999999987654 57899999999999999999999999999987653
Q ss_pred HHHHHHHHH--HhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 035707 639 LVSIARVLR--QIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLY 682 (713)
Q Consensus 639 ~~~la~~~~--~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~ 682 (713)
+..++..+. ..+++ ++|+..|++++.++|.+...+..+-...
T Consensus 241 l~~l~~~~~~~~~~~~--~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 241 LKSLIDAVNEGDSEQL--SEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp HHHHHHHHHTTCTTTH--HHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHH--HHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 344555554 23444 4999999999998887766665554443
No 85
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.78 E-value=5.7e-18 Score=157.80 Aligned_cols=173 Identities=19% Similarity=0.168 Sum_probs=151.8
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHH
Q 035707 511 QGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVC 590 (713)
Q Consensus 511 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 590 (713)
....+..+|.++...|++++|+..+++++...|. ...++..+|.++...|++++|+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~A~~~ 64 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF----------------------DVDVALHLGIAYVKTGAVDRGTEL 64 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC----------------------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc----------------------ChHHHHHHHHHHHHcCCHHHHHHH
Confidence 4567778888888888888888888887766543 377888889999999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC
Q 035707 591 LSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRT 670 (713)
Q Consensus 591 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~ 670 (713)
++++++..|.++.++..+|.++...|++++|+..|++++...|+++.++..+|.++...|+++ +|+.+++++++..|+
T Consensus 65 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~A~~~~~~~~~~~~~ 142 (186)
T 3as5_A 65 LERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFD--EAIDSFKIALGLRPN 142 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHCTT
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHH--HHHHHHHHHHhcCcc
Confidence 999999889888999999999999999999999999999999999999999999999999987 999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCCCC
Q 035707 671 NTTAWYNLGLLYKTYAGASALEAVECFEAAALLEESAPV 709 (713)
Q Consensus 671 ~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~~~ 709 (713)
++.++..+|.++...|+ +++|..+|++++++.|+++.
T Consensus 143 ~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 143 EGKVHRAIAFSYEQMGR--HEEALPHFKKANELDEGASV 179 (186)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHCCCG
T ss_pred chHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCchh
Confidence 99999999999999999 99999999999999888764
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.78 E-value=2.5e-18 Score=172.15 Aligned_cols=235 Identities=16% Similarity=0.110 Sum_probs=179.9
Q ss_pred HcCCHHHHHHHHHHHHhhh--------cCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc------CCCCcHHHHHHH
Q 035707 453 EQRKLDVALYYAKKLLNLE--------ARSNVKGYLLLARVLSAQKQFADAESVINDSLDQT------GKWDQGELLRTK 518 (713)
Q Consensus 453 ~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~~~l 518 (713)
..|++++|+..|+++++.. |... .++..+|.++...|++++|+..++++++.. ..+....++..+
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVA-TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3566666666666666532 3334 678888888888888888888888888763 112556788999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-
Q 035707 519 AKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAI- 597 (713)
Q Consensus 519 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~- 597 (713)
|.++...|++++|+..|++++...... .....|....++..+|.++...|++++|+.++++++.+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~--------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 157 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKV--------------LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIY 157 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHH--------------HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHH--------------cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999885332 12233566899999999999999999999999999998
Q ss_pred -------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHHhcCCC----hHHH
Q 035707 598 -------NPYSASGWHSTGLLYEAKGLQQEALVSFRKALDA---------EPNHVPSLVSIARVLRQIGGES----MATI 657 (713)
Q Consensus 598 -------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---------~p~~~~~~~~la~~~~~~g~~~----l~~A 657 (713)
.|....++..+|.++...|++++|+..|++++.+ .+.....+..++..+...+... +.++
T Consensus 158 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (283)
T 3edt_B 158 ATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEY 237 (283)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 6667789999999999999999999999999986 4556667777887777666553 1133
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccc
Q 035707 658 RCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALLE 704 (713)
Q Consensus 658 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~ 704 (713)
...++......|..+.++..+|.+|...|+ +++|..+|++++++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 238 GSWYKACKVDSPTVNTTLRSLGALYRRQGK--LEAAHTLEDCASRNR 282 (283)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTC
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhh
Confidence 333333333445667789999999999999 999999999999864
No 87
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.75 E-value=4.4e-17 Score=151.71 Aligned_cols=169 Identities=13% Similarity=0.161 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHH
Q 035707 442 YIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKL 521 (713)
Q Consensus 442 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~ 521 (713)
..++.+|..+...|++++|+..+++++...|.+. .++..+|.++...|++++|+..++++++..| .+..++..+|.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~ 85 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDV-DVALHLGIAYVKTGAVDRGTELLERSLADAP--DNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHH
Confidence 3445555555555555555555555555555554 5555555555555555555555555555554 444555555555
Q ss_pred HHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Q 035707 522 QIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYS 601 (713)
Q Consensus 522 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 601 (713)
+...|++++|+..+++++...|.+ ..++..+|.++...|++++|+.++++++...|.+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~----------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 143 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPIN----------------------FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTC----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHh----------------------HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc
Confidence 555555555555555555543322 4455555555555555555555555555555555
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 035707 602 ASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNH 635 (713)
Q Consensus 602 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 635 (713)
+.++..+|.++...|++++|+..+++++..+|++
T Consensus 144 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 144 GKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 5555555555555555555555555555544443
No 88
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.75 E-value=2.6e-17 Score=157.06 Aligned_cols=195 Identities=12% Similarity=-0.008 Sum_probs=129.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHH
Q 035707 440 DPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKA 519 (713)
Q Consensus 440 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la 519 (713)
+++.++..|..+...|++++|+..|++++..+|+++ .+|+..+. .. .. .....+...+|
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~-----~~--------------~~-~~~~~~~~~lg 61 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRT-EMYYWTNV-----DK--------------NS-EISSKLATELA 61 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHH-HHHHHHHS-----CT--------------TS-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh-HHHHHhhh-----cc--------------hh-hhhHHHHHHHH
Confidence 456778888888999999999999999999988877 77766321 00 00 01223344577
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Q 035707 520 KLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINP 599 (713)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 599 (713)
.++...|++++|+..|+++++.+|++ +.+|..+|.++...|++++|+.+|+++++++|
T Consensus 62 ~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P 119 (208)
T 3urz_A 62 LAYKKNRNYDKAYLFYKELLQKAPNN----------------------VDCLEACAEMQVCRGQEKDALRMYEKILQLEA 119 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC----------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCC----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 77777777777777777777776544 67777777777777777777777777777777
Q ss_pred CChhHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHH
Q 035707 600 YSASGWHSTGLLYEAKGL--QQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYN 677 (713)
Q Consensus 600 ~~~~~~~~lg~~~~~~g~--~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~ 677 (713)
+++.+++.+|.+|...|+ ...+...|++++...|. ..+++.+|.++...|+++ +|+.+|+++++++|++ .+...
T Consensus 120 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~--~A~~~~~~al~l~P~~-~~~~~ 195 (208)
T 3urz_A 120 DNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYE--KARNSLQKVILRFPST-EAQKT 195 (208)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHH--HHHHHHHHHTTTSCCH-HHHHH
T ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHH--HHHHHHHHHHHhCCCH-HHHHH
Confidence 777777777777765543 34456666665533221 235666777777777776 7777777777777753 34444
Q ss_pred HHHH
Q 035707 678 LGLL 681 (713)
Q Consensus 678 lg~~ 681 (713)
+..+
T Consensus 196 l~~i 199 (208)
T 3urz_A 196 LDKI 199 (208)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.75 E-value=2.9e-18 Score=154.15 Aligned_cols=147 Identities=13% Similarity=0.027 Sum_probs=118.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcc
Q 035707 481 LLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQ 560 (713)
Q Consensus 481 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 560 (713)
.||.++...|++++|+..+++++...| ++...++.+|.+|...|++++|++.|+++++++|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p--~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~--------------- 64 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPR--QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD--------------- 64 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHH--HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------
Confidence 367777778888888888888888777 667778888888888888888888888888887655
Q ss_pred cCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHH-HHHHHhcCCCCHHHH
Q 035707 561 NHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVS-FRKALDAEPNHVPSL 639 (713)
Q Consensus 561 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~-~~~al~~~p~~~~~~ 639 (713)
+.+|..+|.+|...|++++|+.+|+++++++|+++.+++.+|.++...|++++|... ++++++++|+++.++
T Consensus 65 -------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~ 137 (150)
T 4ga2_A 65 -------PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVY 137 (150)
T ss_dssp -------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHH
T ss_pred -------HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHH
Confidence 788888888888888888888888888888888888888888888888888776665 488888888888888
Q ss_pred HHHHHHHHHhcC
Q 035707 640 VSIARVLRQIGG 651 (713)
Q Consensus 640 ~~la~~~~~~g~ 651 (713)
..++.++...|+
T Consensus 138 ~l~~~ll~~~G~ 149 (150)
T 4ga2_A 138 KLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHTCCC
T ss_pred HHHHHHHHHhCc
Confidence 888888877765
No 90
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.75 E-value=7.2e-17 Score=156.09 Aligned_cols=192 Identities=10% Similarity=-0.030 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 035707 477 KGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQG---ELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGK 553 (713)
Q Consensus 477 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 553 (713)
..++.+|..+...|++++|+..|+++++..| .+. .+++.+|.++...|++++|+..|+++++..|++
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~-------- 74 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYP--FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH-------- 74 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC--------
Confidence 4566666666666666666666666666665 332 456666666666666666666666666665543
Q ss_pred hhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 035707 554 NLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEP 633 (713)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 633 (713)
+....+++.+|.++...+.. ....+..++..+...|++++|+..|+++++..|
T Consensus 75 -----------~~~~~a~~~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P 127 (225)
T 2yhc_A 75 -----------PNIDYVMYMRGLTNMALDDS----------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYP 127 (225)
T ss_dssp -----------TTHHHHHHHHHHHHHHHHC------------------------------CCHHHHHHHHHHHHHHTTCT
T ss_pred -----------CcHHHHHHHHHHHHHhhhhh----------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCc
Confidence 22345566666665542100 000011111222224455555555555555555
Q ss_pred CCHHHH-----------------HHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhCCCCHHHH
Q 035707 634 NHVPSL-----------------VSIARVLRQIGGESMATIRCFLTDALRLDRTNT---TAWYNLGLLYKTYAGASALEA 693 (713)
Q Consensus 634 ~~~~~~-----------------~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~~~A 693 (713)
+++.++ ..+|.+|...|+++ +|+..|+++++..|+++ .+++.+|.+|..+|+ +++|
T Consensus 128 ~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~--~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~--~~~A 203 (225)
T 2yhc_A 128 NSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWV--AVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQM--NAQA 203 (225)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH--HHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTC--HHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH--HHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCC--cHHH
Confidence 554332 57899999999997 99999999999999986 679999999999999 9999
Q ss_pred HHHHHHHHccccCCCC
Q 035707 694 VECFEAAALLEESAPV 709 (713)
Q Consensus 694 ~~~~~~a~~l~p~~~~ 709 (713)
+..|+++....|++..
T Consensus 204 ~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 204 EKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHhhCCCchh
Confidence 9999999998887654
No 91
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=1e-18 Score=179.54 Aligned_cols=319 Identities=10% Similarity=0.051 Sum_probs=163.2
Q ss_pred CchhHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCCh
Q 035707 276 RNNIEEAVLLLLILLKKIVLGKIEWDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCN 355 (713)
Q Consensus 276 ~~~~eeA~~ll~~~~~~~~l~~~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~ 355 (713)
.+++++|+..+ .+. +++.+|..|+.++...|++++|.+.|.++ +++
T Consensus 16 ~~~ld~A~~fa---------e~~-~~~~vWs~La~A~l~~g~~~eAIdsfika------------------------~D~ 61 (449)
T 1b89_A 16 IGNLDRAYEFA---------ERC-NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------------------------DDP 61 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHH---------HhC-CChHHHHHHHHHHHHcCCHHHHHHHHHcC------------------------CCH
Confidence 34566666543 222 34568999999999999999999988653 345
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHh
Q 035707 356 LELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKT 435 (713)
Q Consensus 356 ~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 435 (713)
..+...+..+...|+++ +|+.+++.+++ ..+ ++ .+...++.+| .+.|++.++.+.++
T Consensus 62 ~~y~~V~~~ae~~g~~E-eAi~yl~~ark-~~~-~~----~i~~~Li~~Y-----------~Klg~l~e~e~f~~----- 118 (449)
T 1b89_A 62 SSYMEVVQAANTSGNWE-ELVKYLQMARK-KAR-ES----YVETELIFAL-----------AKTNRLAELEEFIN----- 118 (449)
T ss_dssp -----------------------------------------------------------------CHHHHTTTTT-----
T ss_pred HHHHHHHHHHHhCCCHH-HHHHHHHHHHH-hCc-cc----hhHHHHHHHH-----------HHhCCHHHHHHHHc-----
Confidence 56777778888899999 99999998888 322 24 6677788899 78888888777664
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHH
Q 035707 436 MRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELL 515 (713)
Q Consensus 436 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 515 (713)
.| +..+|..+|..+...|+|++|..+|.++ ..|..+|.++..+|++++|++.++++ .++.+|
T Consensus 119 -~p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~W 180 (449)
T 1b89_A 119 -GP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTW 180 (449)
T ss_dssp -CC-----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHH
T ss_pred -CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc-------CCchhH
Confidence 13 4459999999999999999999999866 46788999999999999999999998 357788
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 035707 516 RTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSK 595 (713)
Q Consensus 516 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 595 (713)
...+.++...|+++.|..+...+. .. ++-...++..|.+.|++++|+.++++++
T Consensus 181 k~v~~aCv~~~ef~lA~~~~l~L~-~~-------------------------ad~l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 181 KEVCFACVDGKEFRLAQMCGLHIV-VH-------------------------ADELEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHTTTTTT-TC-------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHH-hC-------------------------HhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 899999999999999966655422 32 2223468889999999999999999999
Q ss_pred hcCCCChhHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh-
Q 035707 596 AINPYSASGWHSTGLLYEAK--GLQQEALVSFRKALDAEP-----NHVPSLVSIARVLRQIGGESMATIRCFLTDALRL- 667 (713)
Q Consensus 596 ~~~p~~~~~~~~lg~~~~~~--g~~~eA~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~- 667 (713)
.+++.+..+|..+|.+|.+- ++..+.++.|...+.+.| +....|..+..+|.+.++++ .|.....+....
T Consensus 235 ~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d--~A~~tm~~h~~~a 312 (449)
T 1b89_A 235 GLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD--NAIITMMNHPTDA 312 (449)
T ss_dssp TSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHH--HHHHHHHHSTTTT
T ss_pred CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHH--HHHHHHHhCChhh
Confidence 99999999999999988764 466777777777777767 67788999999999999997 777665443322
Q ss_pred -----------CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 035707 668 -----------DRTNTTAWYNLGLLYKTYAGASALEAVECFEAAA 701 (713)
Q Consensus 668 -----------~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~ 701 (713)
.+.+.+.++.....|.. . ...++..+..++
T Consensus 313 ~~~~~f~~~~~kv~n~elyYkai~fyl~--~--~p~~l~~ll~~l 353 (449)
T 1b89_A 313 WKEGQFKDIITKVANVELYYRAIQFYLE--F--KPLLLNDLLMVL 353 (449)
T ss_dssp CCHHHHHHHHHHCSSTHHHHHHHHHHHH--H--CGGGHHHHHHHH
T ss_pred hhhHHHHHHHhchhHHHHHHHHHHHHHh--c--CHHHHHHHHHHH
Confidence 46677888887777773 3 345566666665
No 92
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.74 E-value=2.2e-17 Score=165.30 Aligned_cols=232 Identities=18% Similarity=0.145 Sum_probs=180.8
Q ss_pred HhcHHHHHHHHHHHHHhh-------C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh--------cCCchHHHHHH
Q 035707 419 ILKQSQALVALETAEKTM-------R-ERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLE--------ARSNVKGYLLL 482 (713)
Q Consensus 419 ~~~~~~A~~~~~~al~~~-------~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~~l 482 (713)
.|++++|+..|++++ .. + |..+.++..+|.++...|++++|+.++++++... |... .++..+
T Consensus 14 ~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~l 91 (283)
T 3edt_B 14 LVPRGSAVPLCKQAL-EDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVA-ATLNNL 91 (283)
T ss_dssp CSCSSSHHHHHHHHH-HHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH-HHHHHH
T ss_pred CCCHHHHHHHHHHHH-HHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHH-HHHHHH
Confidence 345555555555555 42 3 5567889999999999999999999999999874 4444 789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcc-----C-CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 035707 483 ARVLSAQKQFADAESVINDSLDQT-----G-KWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLV 556 (713)
Q Consensus 483 a~~~~~~g~~~~A~~~~~~al~~~-----p-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 556 (713)
|.++...|++++|+..+++++... + .+....++..+|.++...|++++|+..|++++......
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----------- 160 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR----------- 160 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-----------
Confidence 999999999999999999999882 1 12567899999999999999999999999999984322
Q ss_pred hhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---------CCCChhHHHHHHHHHHHcCC------HHHH
Q 035707 557 KNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAI---------NPYSASGWHSTGLLYEAKGL------QQEA 621 (713)
Q Consensus 557 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~lg~~~~~~g~------~~eA 621 (713)
.....+....++..+|.++...|++++|+.++++++.+ .+.....+..++..+...+. +.++
T Consensus 161 ---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (283)
T 3edt_B 161 ---LGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEY 237 (283)
T ss_dssp ---SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------
T ss_pred ---cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 12234566889999999999999999999999999986 45556778888877776554 3344
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhC
Q 035707 622 LVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLD 668 (713)
Q Consensus 622 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~ 668 (713)
...++......|....++..+|.++...|+++ +|+.+|+++++..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~ 282 (283)
T 3edt_B 238 GSWYKACKVDSPTVNTTLRSLGALYRRQGKLE--AAHTLEDCASRNR 282 (283)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHTTC
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhh
Confidence 44444433345666788999999999999997 9999999998753
No 93
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=3e-18 Score=176.08 Aligned_cols=290 Identities=14% Similarity=0.145 Sum_probs=149.3
Q ss_pred HHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCc
Q 035707 312 LSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCR 391 (713)
Q Consensus 312 ~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~ 391 (713)
+.+.|+.+.|.+.+++. +++.+|..+|+.+.+.|++. +|++.|.++ .+.
T Consensus 13 l~~~~~ld~A~~fae~~------------------------~~~~vWs~La~A~l~~g~~~-eAIdsfika------~D~ 61 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERC------------------------NEPAVWSQLAKAQLQKGMVK-EAIDSYIKA------DDP 61 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhC------------------------CChHHHHHHHHHHHHcCCHH-HHHHHHHcC------CCH
Confidence 34667788888888875 23458899999999999999 999999764 234
Q ss_pred chHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Q 035707 392 QMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLE 471 (713)
Q Consensus 392 ~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 471 (713)
.++..++.++ ...|++++|+.+++.+. +.. .++.+...++.+|.+.|++.++.+.++.
T Consensus 62 ----~~y~~V~~~a-----------e~~g~~EeAi~yl~~ar-k~~-~~~~i~~~Li~~Y~Klg~l~e~e~f~~~----- 119 (449)
T 1b89_A 62 ----SSYMEVVQAA-----------NTSGNWEELVKYLQMAR-KKA-RESYVETELIFALAKTNRLAELEEFING----- 119 (449)
T ss_dssp ----------------------------------------------------------------CHHHHTTTTTC-----
T ss_pred ----HHHHHHHHHH-----------HhCCCHHHHHHHHHHHH-HhC-ccchhHHHHHHHHHHhCCHHHHHHHHcC-----
Confidence 6777788888 77899999999999988 643 3477888999999999999999887752
Q ss_pred cCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhh
Q 035707 472 ARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSA 551 (713)
Q Consensus 472 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 551 (713)
| +. .+|..+|..+...|+|++|..+|.++ ..+..+|.++..+|++++|++.++++. +
T Consensus 120 p-n~-~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n~~~LA~~L~~Lg~yq~AVea~~KA~-----~------ 176 (449)
T 1b89_A 120 P-NN-AHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKAN-----S------ 176 (449)
T ss_dssp C------------------CTTTHHHHHHHT----------TCHHHHHHHHHTTTCHHHHHHHHHHHT-----C------
T ss_pred C-cH-HHHHHHHHHHHHcCCHHHHHHHHHHh----------hhHHHHHHHHHHhccHHHHHHHHHHcC-----C------
Confidence 4 34 69999999999999999999999976 247899999999999999999999982 1
Q ss_pred hhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 035707 552 GKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDA 631 (713)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 631 (713)
+.+|...+.++...|+|+.|..+.... ...| +-...+..+|.+.|++++|+.++++++.+
T Consensus 177 ----------------~~~Wk~v~~aCv~~~ef~lA~~~~l~L-~~~a---d~l~~lv~~Yek~G~~eEai~lLe~aL~l 236 (449)
T 1b89_A 177 ----------------TRTWKEVCFACVDGKEFRLAQMCGLHI-VVHA---DELEELINYYQDRGYFEELITMLEAALGL 236 (449)
T ss_dssp ----------------HHHHHHHHHHHHHTTCHHHHHHTTTTT-TTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred ----------------chhHHHHHHHHHHcCcHHHHHHHHHHH-HhCH---hhHHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence 789999999999999999998887753 3444 44556888999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 035707 632 EPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDR-----TNTTAWYNLGLLYKTYAGASALEAVECFEA 699 (713)
Q Consensus 632 ~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~ 699 (713)
++.+...+..+|.+|.+-.--.+.+.++.|...+.+.| .++..|..+..+|...++ ++.|+...-.
T Consensus 237 e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e--~d~A~~tm~~ 307 (449)
T 1b89_A 237 ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEE--YDNAIITMMN 307 (449)
T ss_dssp TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTC--HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhch--HHHHHHHHHh
Confidence 99999999999999987543223367777776676666 677889999999999999 9999876543
No 94
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.73 E-value=6.2e-16 Score=155.09 Aligned_cols=227 Identities=13% Similarity=0.082 Sum_probs=150.4
Q ss_pred HcCCHH-HHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCC----------HHHHHHHHHHHhhccCCCCcHHHHHHHHHH
Q 035707 453 EQRKLD-VALYYAKKLLNLEARSNVKGYLLLARVLSAQKQ----------FADAESVINDSLDQTGKWDQGELLRTKAKL 521 (713)
Q Consensus 453 ~~g~~~-~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~~~la~~ 521 (713)
..|.++ +|+..+.+++..+|++. .+|+..+.++...+. +++++.+++.++..+| .+..+|...+.+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~y-taWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P--Kny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFA-TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP--KSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCH-HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhH-HHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHH
Confidence 445544 66777777777777776 777777777666554 5677777777777777 567777777777
Q ss_pred HHHhCC--HHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcC
Q 035707 522 QIAQGR--LKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQ-WRDAEVCLSKSKAIN 598 (713)
Q Consensus 522 ~~~~g~--~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~ 598 (713)
+...++ ++++++.+.++++.+|.+ ..+|...+.+....|. +++++.++.+++..+
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dprN----------------------y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~ 175 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADERN----------------------FHCWDYRRFVAAQAAVAPAEELAFTDSLITRN 175 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTTC----------------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC
Confidence 777663 677777777777776554 6777777777777776 477777777777777
Q ss_pred CCChhHHHHHHHHHHHc--------------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-cCC--------ChH
Q 035707 599 PYSASGWHSTGLLYEAK--------------GLQQEALVSFRKALDAEPNHVPSLVSIARVLRQI-GGE--------SMA 655 (713)
Q Consensus 599 p~~~~~~~~lg~~~~~~--------------g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~--------~l~ 655 (713)
|.+..+|+.++.++... +.++++++++.+++..+|++..+|+.+..++... |.. -++
T Consensus 176 p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~ 255 (331)
T 3dss_A 176 FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQ 255 (331)
T ss_dssp SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHH
Confidence 77777777777776665 3466777777777777777777776665555444 210 134
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHccccC
Q 035707 656 TIRCFLTDALRLDRTNTTAWYNLGLLYK---TYAGASALEAVECFEAAALLEES 706 (713)
Q Consensus 656 ~A~~~~~~al~~~p~~~~~~~~lg~~~~---~~g~~~~~~A~~~~~~a~~l~p~ 706 (713)
++++.+.++++++|++..++..++.+.. ..|. .++...++.+..+++|.
T Consensus 256 ~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~--~~~~~~~l~~l~~~Dp~ 307 (331)
T 3dss_A 256 SELESCKELQELEPENKWCLLTIILLMRALDPLLY--EKETLQYFSTLKAVDPM 307 (331)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTT--HHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHhhCcccchHHHHHHHHHHhhccccc--HHHHHHHHHHHHHhCcc
Confidence 7777777777777777444333333322 2455 66777777777777763
No 95
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.71 E-value=1.1e-14 Score=145.98 Aligned_cols=205 Identities=9% Similarity=-0.014 Sum_probs=167.7
Q ss_pred HHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHH
Q 035707 365 CAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYII 444 (713)
Q Consensus 365 ~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~ 444 (713)
....|.+.++|+.++.+++. .+|.+. .+++..+.++...+..... ......+++++..+..++ ..+|.+..+|
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~-~nP~~y----taWn~Rr~iL~~l~~~~~~-~~~~~~l~~EL~~~~~~L-~~~PKny~aW 111 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILG-ANPDFA----TLWNCRREVLQHLETEKSP-EESAALVKAELGFLESCL-RVNPKSYGTW 111 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHT-TCTTCH----HHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHHHHH-HHCTTCHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHH-HCchhH----HHHHHHHHHHHHhcccccc-hhhhHHHHHHHHHHHHHH-HhCCCCHHHH
Confidence 45688888899999999999 899999 9999999988433221000 011223789999999999 9999999999
Q ss_pred HHHHHHHHHcCC--HHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCC-HHHHHHHHHHHhhccCCCCcHHHHHHHHHH
Q 035707 445 YHLCLENAEQRK--LDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQ-FADAESVINDSLDQTGKWDQGELLRTKAKL 521 (713)
Q Consensus 445 ~~la~~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~la~~ 521 (713)
+..+.++...++ +++++.++.++++.+|.+. .+|...+.++...|. +++++..++++++.+| .+..+|..++.+
T Consensus 112 ~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy-~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p--~N~SAW~~R~~l 188 (331)
T 3dss_A 112 HHRCWLLSRLPEPNWARELELCARFLEADERNF-HCWDYRRFVAAQAAVAPAEELAFTDSLITRNF--SNYSSWHYRSCL 188 (331)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS--CCHHHHHHHHHH
T ss_pred HHHHHHHhccCcccHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC--CCHHHHHHHHHH
Confidence 999999999994 9999999999999999999 999999999999999 6999999999999999 889999999999
Q ss_pred HHHh--------------CCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHC------
Q 035707 522 QIAQ--------------GRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSL------ 581 (713)
Q Consensus 522 ~~~~--------------g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~------ 581 (713)
+... +.++++++.+.+++..+|++ ..+|+.+..++...
T Consensus 189 l~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d----------------------~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 189 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND----------------------QSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTC----------------------HHHHHHHHHHHHSSSCGGGC
T ss_pred HHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHhccCcccc
Confidence 8887 56899999999999998776 77787665555544
Q ss_pred -----CCHHHHHHHHHHHHhcCCCC
Q 035707 582 -----SQWRDAEVCLSKSKAINPYS 601 (713)
Q Consensus 582 -----g~~~~A~~~~~~al~~~p~~ 601 (713)
+.++++++++++++++.|++
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~ 271 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPEN 271 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred chHHHHHHHHHHHHHHHHHhhCccc
Confidence 23445555555555555554
No 96
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.71 E-value=6.2e-16 Score=155.59 Aligned_cols=227 Identities=15% Similarity=0.105 Sum_probs=187.7
Q ss_pred HHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcC-CHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHh-C-CH
Q 035707 452 AEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQK-QFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQ-G-RL 528 (713)
Q Consensus 452 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~-g-~~ 528 (713)
...+..++|+..+.+++..+|++. .+|+..+.++...| .+++++..++.++..+| .+..+|...+.++... + ++
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP~~y-taWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP--Kny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNPAHY-TVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL--KSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHCCSCC
T ss_pred HhCCCCHHHHHHHHHHHHhCchhH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHhcCCCh
Confidence 334455688999999999999988 89999999998888 58999999999999888 7788888888888887 7 88
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHH--------HHHHHHHHHHhcCCC
Q 035707 529 KNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWR--------DAEVCLSKSKAINPY 600 (713)
Q Consensus 529 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~p~ 600 (713)
+++++.+.+++..+|.+ ..+|...+.+....|.++ +++++++++++.+|.
T Consensus 142 ~~EL~~~~k~L~~dpkN----------------------y~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~ 199 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKN----------------------YHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR 199 (349)
T ss_dssp HHHHHHHHHHTSSCTTC----------------------HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC
Confidence 89999999988887655 888888888888887777 999999999999999
Q ss_pred ChhHHHHHHHHHHHcCC-------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC------------------ChH
Q 035707 601 SASGWHSTGLLYEAKGL-------QQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGE------------------SMA 655 (713)
Q Consensus 601 ~~~~~~~lg~~~~~~g~-------~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~------------------~l~ 655 (713)
+..+|+.++.++...+. ++++++++++++..+|++..+|+.+..++...|+. .++
T Consensus 200 N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (349)
T 3q7a_A 200 NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIE 279 (349)
T ss_dssp CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------
T ss_pred CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccch
Confidence 99999999999999887 79999999999999999999999999999998875 112
Q ss_pred HHHHHHHHHHhhC------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-cccc
Q 035707 656 TIRCFLTDALRLD------RTNTTAWYNLGLLYKTYAGASALEAVECFEAAA-LLEE 705 (713)
Q Consensus 656 ~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~-~l~p 705 (713)
+...+..+.+... +.++.++..|+.+|...|+ .++|.++|+... +.+|
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~--~~~a~~~~~~l~~~~dp 334 (349)
T 3q7a_A 280 TVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNR--VDDAAKVFEKLSSEYDQ 334 (349)
T ss_dssp ------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTTCG
T ss_pred hHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhhhCh
Confidence 3333333333322 4678899999999999999 999999999976 4444
No 97
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.71 E-value=1.9e-16 Score=137.29 Aligned_cols=118 Identities=14% Similarity=0.064 Sum_probs=111.5
Q ss_pred CCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 035707 563 DRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSI 642 (713)
Q Consensus 563 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 642 (713)
..|..+..+..+|..|++.|++++|+.+|+++++++|.++.+|+.+|.++..+|++++|+..|+++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 34666999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 035707 643 ARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLY 682 (713)
Q Consensus 643 a~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~ 682 (713)
|.++..+|+++ +|+..|+++++++|+++.++..++.++
T Consensus 88 g~~~~~~~~~~--~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 88 AACLVAMREWS--KAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHTTCHH--HHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHCCCHH--HHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999997 999999999999999999999998764
No 98
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.70 E-value=1e-15 Score=147.94 Aligned_cols=189 Identities=13% Similarity=0.007 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Q 035707 395 SIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDP---YIIYHLCLENAEQRKLDVALYYAKKLLNLE 471 (713)
Q Consensus 395 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 471 (713)
+..++.+|..+ ...|++++|+..|++++ ...|.++ .+++.+|.++...|++++|+..|+++++..
T Consensus 4 ~~~~~~~a~~~-----------~~~g~~~~A~~~~~~~~-~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~ 71 (225)
T 2yhc_A 4 PNEIYATAQQK-----------LQDGNWRQAITQLEALD-NRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 71 (225)
T ss_dssp HHHHHHHHHHH-----------HHHTCHHHHHHHHHHHH-HHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH-----------HHcCCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence 37788899998 88999999999999999 9888764 689999999999999999999999999999
Q ss_pred cCCch--HHHHHHHHHHHH------------------cCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHH
Q 035707 472 ARSNV--KGYLLLARVLSA------------------QKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNA 531 (713)
Q Consensus 472 p~~~~--~~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A 531 (713)
|+++. .+++.+|.++.. .|++++|+..|+++++.+| ++..+...+..+
T Consensus 72 P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P--~~~~a~~a~~~l---------- 139 (225)
T 2yhc_A 72 PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYP--NSQYTTDATKRL---------- 139 (225)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCT--TCTTHHHHHHHH----------
T ss_pred cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCc--CChhHHHHHHHH----------
Confidence 98862 378889988876 4567777777777777766 333222111110
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh---hHHHHH
Q 035707 532 IETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSA---SGWHST 608 (713)
Q Consensus 532 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l 608 (713)
..+.. ........+|.+|...|++++|+..|+++++..|+++ .++..+
T Consensus 140 ----~~~~~-------------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 190 (225)
T 2yhc_A 140 ----VFLKD-------------------------RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLM 190 (225)
T ss_dssp ----HHHHH-------------------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred ----HHHHH-------------------------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHH
Confidence 00000 1134556789999999999999999999999999876 679999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 035707 609 GLLYEAKGLQQEALVSFRKALDAEPNHV 636 (713)
Q Consensus 609 g~~~~~~g~~~eA~~~~~~al~~~p~~~ 636 (713)
|.++...|++++|+..++++....|++.
T Consensus 191 ~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 191 ENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 9999999999999999999998888764
No 99
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.70 E-value=9.2e-17 Score=148.76 Aligned_cols=163 Identities=15% Similarity=0.085 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 035707 513 ELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLS 592 (713)
Q Consensus 513 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 592 (713)
..+..+|..+...|++++|+..|+++++.+|++ +.++..+|.++...|++++|+..|+
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~----------------------~~a~~~la~~~~~~g~~~~A~~~~~ 64 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSR----------------------GDVKLAKADCLLETKQFELAQELLA 64 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS----------------------HHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc----------------------HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 346677888888888888888888888887765 7888888888888888888888888
Q ss_pred HHHhcCCCChhHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC
Q 035707 593 KSKAINPYSASGWHSTGLLYE-AKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTN 671 (713)
Q Consensus 593 ~al~~~p~~~~~~~~lg~~~~-~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~ 671 (713)
+++...| ++..+..++.+.. ..+...+|+..|+++++.+|+++.+++.+|.++...|+++ +|+..|+++++.+|+.
T Consensus 65 ~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~--~A~~~~~~~l~~~p~~ 141 (176)
T 2r5s_A 65 TIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDE--EALELLWNILKVNLGA 141 (176)
T ss_dssp TCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHTTCTTT
T ss_pred HhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHH--HHHHHHHHHHHhCccc
Confidence 8888888 7766665554432 2233445788888888888888888888888888888887 8888888888888865
Q ss_pred --HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHc
Q 035707 672 --TTAWYNLGLLYKTYAGASALEAVECFEAAAL 702 (713)
Q Consensus 672 --~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~ 702 (713)
+.++..+|.++...|+ .++|+.+|++++.
T Consensus 142 ~~~~a~~~l~~~~~~~g~--~~~A~~~y~~al~ 172 (176)
T 2r5s_A 142 QDGEVKKTFMDILSALGQ--GNAIASKYRRQLY 172 (176)
T ss_dssp TTTHHHHHHHHHHHHHCS--SCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhCC--CCcHHHHHHHHHH
Confidence 5688888888888888 8888888888874
No 100
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.70 E-value=1.3e-17 Score=149.01 Aligned_cols=116 Identities=20% Similarity=0.152 Sum_probs=99.0
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhC
Q 035707 589 VCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLD 668 (713)
Q Consensus 589 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~ 668 (713)
..+++++.++|+++.+++.+|.++...|++++|+..|++++.++|+++.+|.++|.++...|+++ +|+..|+++++++
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~--~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQ--QAADLYAVAFALG 100 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHH--HHHHHHHHHHhhC
Confidence 45667778888888888888888888888888888888888888888888888888888888887 8888888888888
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCCC
Q 035707 669 RTNTTAWYNLGLLYKTYAGASALEAVECFEAAALLEESAP 708 (713)
Q Consensus 669 p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~~ 708 (713)
|+++.+|+++|.+|...|+ +++|+.+|++++++.|+++
T Consensus 101 P~~~~~~~~lg~~~~~lg~--~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 101 KNDYTPVFHTGQCQLRLKA--PLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SSCCHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCCCHH
T ss_pred CCCcHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCHH
Confidence 8888888888888888888 8888888888888888754
No 101
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.69 E-value=1.6e-13 Score=152.13 Aligned_cols=245 Identities=5% Similarity=-0.045 Sum_probs=199.0
Q ss_pred HHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHH-HHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHH
Q 035707 458 DVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAE-SVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYV 536 (713)
Q Consensus 458 ~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 536 (713)
......|++++...|.++ ..|...+..+...|+.++|. .+|++++...| .+..++...+.+....|++++|.+.|+
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~-~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P--~s~~Lwl~~a~~ee~~~~~e~aR~iye 402 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAP-EIWFNMANYQGEKNTDSTVITKYLKLGQQCIP--NSAVLAFSLSEQYELNTKIPEIETTIL 402 (679)
T ss_dssp HHHHHHHHHHHHHTTTCH-HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 345678999999999998 99999999999999999997 99999999988 678889999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCChhHHHHHHHHHHHc
Q 035707 537 NLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAI-NPYSASGWHSTGLLYEAK 615 (713)
Q Consensus 537 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~ 615 (713)
+++...+..........................+|...+.+..+.|..+.|..+|.++++. .+....+|...+.+....
T Consensus 403 k~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~ 482 (679)
T 4e6h_A 403 SCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI 482 (679)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh
Confidence 9998643221000000000000000000123568999999999999999999999999987 444567787778777776
Q ss_pred C-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHhCCCCHH
Q 035707 616 G-LQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRT---NTTAWYNLGLLYKTYAGASAL 691 (713)
Q Consensus 616 g-~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~~ 691 (713)
+ +++.|...|+++++..|+++..|...+......|+.+ .|+.+|++++...|+ ....|......-...|+ .+
T Consensus 483 ~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~--~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~--~~ 558 (679)
T 4e6h_A 483 SKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEES--QVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGS--LN 558 (679)
T ss_dssp TSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHH--HHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCC--SH
T ss_pred CCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC--HH
Confidence 5 4899999999999999999999999999999999886 999999999998883 56788888998999999 99
Q ss_pred HHHHHHHHHHccccCCCC
Q 035707 692 EAVECFEAAALLEESAPV 709 (713)
Q Consensus 692 ~A~~~~~~a~~l~p~~~~ 709 (713)
.+...++++.+..|+++.
T Consensus 559 ~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 559 SVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHHHHHHSTTCCH
T ss_pred HHHHHHHHHHHhCCCCcH
Confidence 999999999999998763
No 102
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.69 E-value=1.1e-15 Score=153.56 Aligned_cols=171 Identities=16% Similarity=0.035 Sum_probs=148.5
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHH
Q 035707 435 TMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGEL 514 (713)
Q Consensus 435 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 514 (713)
...|.+...++.+|..+...|++++|+..|++++..+|++. .++..+|.++..+|++++|+..+++++..+| +....
T Consensus 111 ~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~-~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p--~~~~~ 187 (287)
T 3qou_A 111 XVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNG-EIGLLLAETLIALNRSEDAEAVLXTIPLQDQ--DTRYQ 187 (287)
T ss_dssp HHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCH-HHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC--SHHHH
T ss_pred HHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcch-hHHHHHHHHHHHCCCHHHHHHHHHhCchhhc--chHHH
Confidence 44488899999999999999999999999999999999999 9999999999999999999999999999988 55666
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 035707 515 LRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKS 594 (713)
Q Consensus 515 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 594 (713)
....+..+...++.++|+..|++++..+|++ ..+++.+|.++...|++++|+..|+++
T Consensus 188 ~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~----------------------~~~~~~la~~l~~~g~~~~A~~~l~~~ 245 (287)
T 3qou_A 188 GLVAQIELLXQAADTPEIQQLQQQVAENPED----------------------AALATQLALQLHQVGRNEEALELLFGH 245 (287)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHCTTC----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCccHHHHHHHHhcCCcc----------------------HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 6666777778888888888888888887655 788888888888888888888888888
Q ss_pred HhcCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 035707 595 KAINPYS--ASGWHSTGLLYEAKGLQQEALVSFRKALD 630 (713)
Q Consensus 595 l~~~p~~--~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 630 (713)
++.+|++ ..++..++.++...|+.++|+..|++++.
T Consensus 246 l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 246 LRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 8888877 77888888888888888888888888764
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.68 E-value=7.6e-16 Score=154.75 Aligned_cols=167 Identities=13% Similarity=0.113 Sum_probs=133.5
Q ss_pred CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHH
Q 035707 510 DQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEV 589 (713)
Q Consensus 510 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 589 (713)
.+...+..+|..+...|++++|+..|++++..+|++ +.++..+|.++...|++++|+.
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~----------------------~~a~~~la~~~~~~g~~~~A~~ 172 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN----------------------GEIGLLLAETLIALNRSEDAEA 172 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC----------------------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc----------------------hhHHHHHHHHHHHCCCHHHHHH
Confidence 566777788888888888888888888888887654 7778888888888888888888
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCC
Q 035707 590 CLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDR 669 (713)
Q Consensus 590 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p 669 (713)
.+++++..+|+....+...+..+...++.++|+..|++++..+|+++.+++.+|.++...|+++ +|+..|+++++.+|
T Consensus 173 ~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~--~A~~~l~~~l~~~p 250 (287)
T 3qou_A 173 VLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNE--EALELLFGHLRXDL 250 (287)
T ss_dssp HHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHCT
T ss_pred HHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHH--HHHHHHHHHHhccc
Confidence 8888888888666666666666777777788888888888888888888888888888888876 88888888888888
Q ss_pred CC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHc
Q 035707 670 TN--TTAWYNLGLLYKTYAGASALEAVECFEAAAL 702 (713)
Q Consensus 670 ~~--~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~ 702 (713)
++ ..++.+++.++...|+ .++|...|++++.
T Consensus 251 ~~~~~~a~~~l~~~~~~~g~--~~~a~~~~r~al~ 283 (287)
T 3qou_A 251 TAADGQTRXTFQEILAALGT--GDALASXYRRQLY 283 (287)
T ss_dssp TGGGGHHHHHHHHHHHHHCT--TCHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHcCC--CCcHHHHHHHHHH
Confidence 77 7788888888888888 8888888888764
No 104
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.68 E-value=3.4e-16 Score=159.15 Aligned_cols=230 Identities=12% Similarity=0.015 Sum_probs=183.1
Q ss_pred HHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHH
Q 035707 417 KRILKQSQALVALETAEKTMRERDPYIIYHLCLENAE-QRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADA 495 (713)
Q Consensus 417 ~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A 495 (713)
+..|++++|.++++++. +..+.. ++. .++++.|+..|.++ +.++...|++++|
T Consensus 2 ~~~~~~~eA~~~~~~a~-k~~~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A 55 (307)
T 2ifu_A 2 IAAQKISEAHEHIAKAE-KYLKTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQA 55 (307)
T ss_dssp -CHHHHHHHHHHHHHHH-HHHCCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHH
T ss_pred CccchHHHHHHHHHHHH-HHcccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHH
Confidence 34688999999999998 655532 122 58899998888765 5677889999999
Q ss_pred HHHHHHHhhccCCCC----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHH
Q 035707 496 ESVINDSLDQTGKWD----QGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETW 571 (713)
Q Consensus 496 ~~~~~~al~~~p~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (713)
+..|.+++++.+... ...++..+|.++..+|++++|+..|++++.+.+ ...+......++
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~----------------~~g~~~~~a~~~ 119 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYV----------------ENGTPDTAAMAL 119 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHH----------------TTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH----------------HcCCHHHHHHHH
Confidence 999999998864222 245888999999999999999999999999864 333333457889
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHH
Q 035707 572 HDLANVYTSLSQWRDAEVCLSKSKAINPYS------ASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNH------VPSL 639 (713)
Q Consensus 572 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~ 639 (713)
..+|.+|.. |++++|+.+|++++.+.|.. ..++.++|.++...|++++|+..|++++.+.|++ ..++
T Consensus 120 ~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 198 (307)
T 2ifu_A 120 DRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKC 198 (307)
T ss_dssp HHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHH
Confidence 999999998 99999999999999987643 5678999999999999999999999999986643 2477
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHH-----HHHHHHHHHHHhCCCCHHHHHH
Q 035707 640 VSIARVLRQIGGESMATIRCFLTDALRLDRTNTT-----AWYNLGLLYKTYAGASALEAVE 695 (713)
Q Consensus 640 ~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~-----~~~~lg~~~~~~g~~~~~~A~~ 695 (713)
..+|.++...|+++ +|+.+|++++ ++|+... .+..++..+ ..|+ .+.+..
T Consensus 199 ~~~g~~~~~~g~~~--~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d--~~~~~~ 253 (307)
T 2ifu_A 199 IAQVLVQLHRADYV--AAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQD--EEQLLR 253 (307)
T ss_dssp HHHHHHHHHTTCHH--HHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTC--HHHHHH
T ss_pred HHHHHHHHHcCCHH--HHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcC--HHHHHH
Confidence 88899999999997 9999999999 9997643 244555555 5677 655544
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.68 E-value=4.3e-16 Score=144.23 Aligned_cols=68 Identities=18% Similarity=0.026 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccC
Q 035707 439 RDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTG 507 (713)
Q Consensus 439 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 507 (713)
...+.++.+|..+...|++++|+..|+++++.+|+++ .++..+|.++...|++++|+..+++++...|
T Consensus 4 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~-~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p 71 (176)
T 2r5s_A 4 SPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRG-DVKLAKADCLLETKQFELAQELLATIPLEYQ 71 (176)
T ss_dssp --CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSH-HHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHHCCCHHHHHHHHHHhhhccC
Confidence 3344566777777777777777777777777777777 7777777777777777777777777777665
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.68 E-value=8.5e-16 Score=156.20 Aligned_cols=184 Identities=14% Similarity=0.075 Sum_probs=148.9
Q ss_pred hcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCc-----hHHHHHHHHHHHHcCCHHH
Q 035707 420 LKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSN-----VKGYLLLARVLSAQKQFAD 494 (713)
Q Consensus 420 ~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~~la~~~~~~g~~~~ 494 (713)
+++++|+..|.++ |.+|...|++++|+..|.+++.+.+... ..++..+|.++..+|++++
T Consensus 30 ~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 94 (307)
T 2ifu_A 30 PDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPE 94 (307)
T ss_dssp CCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred CCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHH
Confidence 5666666666654 4578889999999999999998865431 2578889999999999999
Q ss_pred HHHHHHHHhhccCCCCcH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHH
Q 035707 495 AESVINDSLDQTGKWDQG----ELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMET 570 (713)
Q Consensus 495 A~~~~~~al~~~p~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (713)
|+.+|++++++.+...+. .++..+|.++.. |++++|+..|++++.+.+. .........+
T Consensus 95 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~----------------~~~~~~~~~~ 157 (307)
T 2ifu_A 95 AVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFEN----------------EERLRQAAEL 157 (307)
T ss_dssp GHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHH----------------TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHh----------------CCChhHHHHH
Confidence 999999999998755554 467889999988 9999999999999998762 3333344678
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 035707 571 WHDLANVYTSLSQWRDAEVCLSKSKAINPYS------ASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHV 636 (713)
Q Consensus 571 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 636 (713)
+..+|.+|..+|++++|+.+|++++.+.|.+ ..++..+|.++...|++++|+..|++++ ++|+..
T Consensus 158 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 158 IGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence 8999999999999999999999999886544 2367888899999999999999999999 888754
No 107
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.67 E-value=7.5e-16 Score=133.52 Aligned_cols=120 Identities=13% Similarity=0.098 Sum_probs=104.7
Q ss_pred hhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCC
Q 035707 503 LDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLS 582 (713)
Q Consensus 503 l~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 582 (713)
..++| +....+..+|..+...|++++|++.|+++++.+|.+ +.+|..+|.+|..+|
T Consensus 6 a~inP--~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~~~~~~~~~~ 61 (126)
T 4gco_A 6 AYINP--ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN----------------------AILYSNRAACLTKLM 61 (126)
T ss_dssp -CCCH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------------------HHHHHHHHHHHHHTT
T ss_pred HHHCH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHhhHHHhhc
Confidence 34566 677888889999999999999999999999887655 888999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 035707 583 QWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVL 646 (713)
Q Consensus 583 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~ 646 (713)
++++|+..|+++++++|.++.+|+.+|.++..+|++++|+..|+++++++|++..++..++.++
T Consensus 62 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 62 EFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999888887764
No 108
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.66 E-value=8.5e-15 Score=147.35 Aligned_cols=232 Identities=12% Similarity=-0.020 Sum_probs=200.6
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHc-C-CHHHHHHH
Q 035707 422 QSQALVALETAEKTMRERDPYIIYHLCLENAEQR-KLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQ-K-QFADAESV 498 (713)
Q Consensus 422 ~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~-g-~~~~A~~~ 498 (713)
.++|+..+.+++ .++|++..+|+..+.++...| .+++++..+++++..+|++. .+|...+.++... + ++++++..
T Consensus 70 se~AL~lt~~~L-~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny-~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 70 SERALELTEIIV-RMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSY-QVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp SHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCH-HHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CHHHHHHHHHHH-HhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHhcCCChHHHHHH
Confidence 378999999999 999999999999999999999 59999999999999999999 9999999999998 8 99999999
Q ss_pred HHHHhhccCCCCcHHHHHHHHHHHHHhCCHH--------HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHH
Q 035707 499 INDSLDQTGKWDQGELLRTKAKLQIAQGRLK--------NAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMET 570 (713)
Q Consensus 499 ~~~al~~~p~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (713)
++++++.+| .+..+|...+.+....|.++ ++++.++++++.+|.+ ..+
T Consensus 148 ~~k~L~~dp--kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N----------------------~SA 203 (349)
T 3q7a_A 148 IHGSLLPDP--KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRN----------------------NSA 203 (349)
T ss_dssp HHHHTSSCT--TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTC----------------------HHH
T ss_pred HHHHHHhCC--CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCC----------------------HHH
Confidence 999999999 78999999999999988888 9999999999998766 899
Q ss_pred HHHHHHHHHHCCC-------HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCH--------------------HHHHH
Q 035707 571 WHDLANVYTSLSQ-------WRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQ--------------------QEALV 623 (713)
Q Consensus 571 ~~~la~~~~~~g~-------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~--------------------~eA~~ 623 (713)
|...+.++...++ ++++++++++++.++|.+..+|+.+..++...|+. .+-..
T Consensus 204 W~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (349)
T 3q7a_A 204 WGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEA 283 (349)
T ss_dssp HHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC------------
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHH
Confidence 9999999999887 79999999999999999999999999998887764 22222
Q ss_pred HHHHHHhcC------CCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHH-hhCCCCHHHHHHHHHH
Q 035707 624 SFRKALDAE------PNHVPSLVSIARVLRQIGGESMATIRCFLTDAL-RLDRTNTTAWYNLGLL 681 (713)
Q Consensus 624 ~~~~al~~~------p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al-~~~p~~~~~~~~lg~~ 681 (713)
.....+... +.++.++..++.+|...|+.+ +|.+.++... +.||-....|...+..
T Consensus 284 ~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~--~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 284 FGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVD--DAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp --CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 222222222 467889999999999999886 9999999986 6788877777766543
No 109
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.65 E-value=5.8e-16 Score=150.69 Aligned_cols=211 Identities=13% Similarity=0.009 Sum_probs=172.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHH-------HHHHHHcCCHHHHHHHHHHHhhccCCC-------
Q 035707 444 IYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLL-------ARVLSAQKQFADAESVINDSLDQTGKW------- 509 (713)
Q Consensus 444 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~------- 509 (713)
++..|..+ ..+++..|...|.+++..+|+.. ++|..+ +.++...++..+++..+.+.+.+.|..
T Consensus 10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~-Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~ 87 (282)
T 4f3v_A 10 LFESAVSM-LPMSEARSLDLFTEITNYDESAC-DAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAI 87 (282)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEEC
T ss_pred HHHHHhcc-cCCCHHHHHHHHHHHHHhChhhh-HHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhcc
Confidence 44455555 57899999999999999999998 999998 788999999999999999998865420
Q ss_pred ------------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHH
Q 035707 510 ------------DQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANV 577 (713)
Q Consensus 510 ------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 577 (713)
.-..+...++.++...|++++|.+.|..++...| ... +++.+|.+
T Consensus 88 ~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p----------------------~~~-~~~~~a~l 144 (282)
T 4f3v_A 88 GGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGS----------------------EHL-VAWMKAVV 144 (282)
T ss_dssp CTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTC----------------------HHH-HHHHHHHH
T ss_pred CCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC----------------------chH-HHHHHHHH
Confidence 1145666788999999999999999988766544 336 88999999
Q ss_pred HHHCCCHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC-CHHHHHHHHHHHHHhcCC
Q 035707 578 YTSLSQWRDAEVCLSKSKAINPYS--ASGWHSTGLLYEAKGLQQEALVSFRKALDAE--PN-HVPSLVSIARVLRQIGGE 652 (713)
Q Consensus 578 ~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~ 652 (713)
+.+.++|++|+.+|+++....+.. ..+++.+|.++...|++++|+.+|++++... |. .+++++.+|.++.++|+.
T Consensus 145 ~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~ 224 (282)
T 4f3v_A 145 YGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNE 224 (282)
T ss_dssp HHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCH
T ss_pred HHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCH
Confidence 999999999999999877653221 3589999999999999999999999998644 55 567999999999999998
Q ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 035707 653 SMATIRCFLTDALRLDRTNTTAWYNLGLLY 682 (713)
Q Consensus 653 ~l~~A~~~~~~al~~~p~~~~~~~~lg~~~ 682 (713)
+ +|...|++++..+|+ +.++..|...-
T Consensus 225 d--eA~~~l~~a~a~~P~-~~~~~aL~~~~ 251 (282)
T 4f3v_A 225 S--AAVALLEWLQTTHPE-PKVAAALKDPS 251 (282)
T ss_dssp H--HHHHHHHHHHHHSCC-HHHHHHHHCTT
T ss_pred H--HHHHHHHHHHhcCCc-HHHHHHHhCCC
Confidence 7 999999999999999 88777765443
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.64 E-value=2.1e-15 Score=167.43 Aligned_cols=158 Identities=15% Similarity=0.076 Sum_probs=135.1
Q ss_pred hCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhH
Q 035707 525 QGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASG 604 (713)
Q Consensus 525 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 604 (713)
.|++++|+..|+++++.+|.+ ..+|..+|.++...|++++|+..|+++++.+|+++.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 59 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQD----------------------FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEA 59 (568)
T ss_dssp -------------------CC----------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHH
T ss_pred CccHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 478999999999999987654 8899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 035707 605 WHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKT 684 (713)
Q Consensus 605 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 684 (713)
+..+|.++...|++++|+..|+++++.+|++..++..+|.++...|+++ +|+..|+++++.+|+++.++..+|.++..
T Consensus 60 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 137 (568)
T 2vsy_A 60 VARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAE--AAAAAYTRAHQLLPEEPYITAQLLNWRRR 137 (568)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999997 99999999999999999999999999999
Q ss_pred h---CCCCHHHHHHHHHHHHccccCCC
Q 035707 685 Y---AGASALEAVECFEAAALLEESAP 708 (713)
Q Consensus 685 ~---g~~~~~~A~~~~~~a~~l~p~~~ 708 (713)
. |+ +++|...|+++++.+|++.
T Consensus 138 ~~~~g~--~~~A~~~~~~al~~~p~~~ 162 (568)
T 2vsy_A 138 LCDWRA--LDVLSAQVRAAVAQGVGAV 162 (568)
T ss_dssp TTCCTT--HHHHHHHHHHHHHHTCCCS
T ss_pred hhcccc--HHHHHHHHHHHHhcCCccc
Confidence 9 99 9999999999999999864
No 111
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.64 E-value=5.3e-16 Score=138.52 Aligned_cols=110 Identities=12% Similarity=0.058 Sum_probs=105.0
Q ss_pred cCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 035707 561 NHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLV 640 (713)
Q Consensus 561 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 640 (713)
....|.++.+++.+|.++...|++++|+.+|++++.++|.++.+|+.+|.++...|++++|+..|++++.++|+++.+++
T Consensus 29 l~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 29 NAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 34456679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhCCCCH
Q 035707 641 SIARVLRQIGGESMATIRCFLTDALRLDRTNT 672 (713)
Q Consensus 641 ~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~ 672 (713)
++|.+|..+|+++ +|+..|++++++.|+.+
T Consensus 109 ~lg~~~~~lg~~~--eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPL--KAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHH--HHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHH--HHHHHHHHHHHhCCCHH
Confidence 9999999999997 99999999999999865
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.63 E-value=4.1e-15 Score=165.19 Aligned_cols=165 Identities=14% Similarity=0.054 Sum_probs=111.0
Q ss_pred HhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHH
Q 035707 419 ILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESV 498 (713)
Q Consensus 419 ~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~ 498 (713)
.|++++|+..|++++ +.+|++..+++.+|.++...|++++|+..|+++++.+|++. .++..+|.++..+|++++|+..
T Consensus 2 ~g~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAV-RHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHP-EAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCH-HHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHCCCHHHHHHH
Confidence 466777777777777 77777777777777777777777777777777777777777 7777777777777777777777
Q ss_pred HHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHH
Q 035707 499 INDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVY 578 (713)
Q Consensus 499 ~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 578 (713)
|+++++.+| .+..++..+|.++...|++++|++.|+++++.+|++ ..++..+|.++
T Consensus 80 ~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~l~~~~ 135 (568)
T 2vsy_A 80 LQQASDAAP--EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE----------------------PYITAQLLNWR 135 (568)
T ss_dssp HHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------------------HHHHHHHHHHH
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHH
Confidence 777777777 567777777777777777777777777777776543 66777777777
Q ss_pred HHC---CCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 035707 579 TSL---SQWRDAEVCLSKSKAINPYSASGWHSTG 609 (713)
Q Consensus 579 ~~~---g~~~~A~~~~~~al~~~p~~~~~~~~lg 609 (713)
... |++++|+..|+++++.+|.+...+..++
T Consensus 136 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 136 RRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 777 7777777777777777777766666555
No 113
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.63 E-value=7.4e-16 Score=137.83 Aligned_cols=115 Identities=10% Similarity=0.003 Sum_probs=66.0
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCC
Q 035707 590 CLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDR 669 (713)
Q Consensus 590 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p 669 (713)
.|++++.++|.+..+++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|+++ +|+..|++++.++|
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~--~A~~~~~~al~l~p 86 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYD--LAIHSYSYGAVMDI 86 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHST
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHH--HHHHHHHHHHhcCC
Confidence 3455555555555555555555555555555555555555555555555555555555555554 55555555555555
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCCC
Q 035707 670 TNTTAWYNLGLLYKTYAGASALEAVECFEAAALLEESAP 708 (713)
Q Consensus 670 ~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~~ 708 (713)
+++.+++++|.+|...|+ +++|+.+|++++++.|++|
T Consensus 87 ~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGE--LAEAESGLFLAQELIANXP 123 (148)
T ss_dssp TCTHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHTTCG
T ss_pred CCchHHHHHHHHHHHcCC--HHHHHHHHHHHHHHCcCCC
Confidence 555555555555555555 5555555555555555544
No 114
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.62 E-value=2.2e-15 Score=146.58 Aligned_cols=204 Identities=10% Similarity=-0.014 Sum_probs=175.3
Q ss_pred HHhcHHHHHHHHHHHHHhhCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHhhhcCCc---------------
Q 035707 418 RILKQSQALVALETAEKTMRERDPYIIYHL-------CLENAEQRKLDVALYYAKKLLNLEARSN--------------- 475 (713)
Q Consensus 418 ~~~~~~~A~~~~~~al~~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~~l~~~p~~~--------------- 475 (713)
+.+++..|...|.+++ ..+|..+++|..+ +.++...++..+++..+++.+.+.|...
T Consensus 18 ~~~d~~~A~~~F~~a~-~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEIT-NYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHH-HhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4688899999999999 9999999999999 8999999999999999999999776543
Q ss_pred -----hHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhh
Q 035707 476 -----VKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFS 550 (713)
Q Consensus 476 -----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 550 (713)
...+..++.++...|++++|.+.|+.++...| .+. ..+.+|.++...+++++|+..|+.+....
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p--~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-------- 165 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGS--EHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-------- 165 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTC--HHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS--------
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--chH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC--------
Confidence 13455688999999999999999999998887 666 99999999999999999999998654431
Q ss_pred hhhhhhhhcccCCCc-cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CC-ChhHHHHHHHHHHHcCCHHHHHHHHH
Q 035707 551 AGKNLVKNRQNHDRS-LEMETWHDLANVYTSLSQWRDAEVCLSKSKAIN--PY-SASGWHSTGLLYEAKGLQQEALVSFR 626 (713)
Q Consensus 551 ~~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~lg~~~~~~g~~~eA~~~~~ 626 (713)
.+ ....+++.+|.++..+|++++|+.+|++++.-. |. .+.+++.+|.++..+|+.++|...|+
T Consensus 166 -------------d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~ 232 (282)
T 4f3v_A 166 -------------DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLE 232 (282)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred -------------CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 11 125689999999999999999999999998644 54 56799999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHH
Q 035707 627 KALDAEPNHVPSLVSIARVLR 647 (713)
Q Consensus 627 ~al~~~p~~~~~~~~la~~~~ 647 (713)
+++..+|+ ..++..|...-+
T Consensus 233 ~a~a~~P~-~~~~~aL~~~~~ 252 (282)
T 4f3v_A 233 WLQTTHPE-PKVAAALKDPSY 252 (282)
T ss_dssp HHHHHSCC-HHHHHHHHCTTC
T ss_pred HHHhcCCc-HHHHHHHhCCCC
Confidence 99999999 877766654433
No 115
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.61 E-value=2e-16 Score=162.70 Aligned_cols=185 Identities=12% Similarity=0.038 Sum_probs=155.4
Q ss_pred cCCHHHHHHHHHH----HhhccCCCCcHHHHHHHHHHHH------------HhCCHHHHHHHHHHHHHHHhhhhhhhhhh
Q 035707 489 QKQFADAESVIND----SLDQTGKWDQGELLRTKAKLQI------------AQGRLKNAIETYVNLLAVLQFRKKSFSAG 552 (713)
Q Consensus 489 ~g~~~~A~~~~~~----al~~~p~~~~~~~~~~la~~~~------------~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 552 (713)
.+.+++|+..++. ++.+.|. . ++...|.... ..+++++|+..+++++...|..
T Consensus 78 ~~~~e~al~~~~~Ge~~~l~i~p~--~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~------- 146 (336)
T 1p5q_A 78 PYGLERAIQRMEKGEHSIVYLKPS--Y--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQ------- 146 (336)
T ss_dssp CHHHHHHHTTCCTTCEEEEEECTT--T--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHH-------
T ss_pred chHHHHHHhcCCCCCeEEEEECCc--c--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHH-------
Confidence 3456666666666 6666552 2 2222222211 3456667777777777766544
Q ss_pred hhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---------------hhHHHHHHHHHHHcCC
Q 035707 553 KNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYS---------------ASGWHSTGLLYEAKGL 617 (713)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~ 617 (713)
+.++..+|.++...|++++|+.+|++++.+.|.+ ..+++++|.++...|+
T Consensus 147 ---------------a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~ 211 (336)
T 1p5q_A 147 ---------------STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA 211 (336)
T ss_dssp ---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8999999999999999999999999999999998 5899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHH-HHH
Q 035707 618 QQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEA-VEC 696 (713)
Q Consensus 618 ~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A-~~~ 696 (713)
+++|+..|+++++++|+++.+++.+|.+|...|+++ +|+..|+++++++|+++.++..++.++...|+ +++| ...
T Consensus 212 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~--~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~--~~~a~~~~ 287 (336)
T 1p5q_A 212 FSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFE--LARADFQKVLQLYPNNKAAKTQLAVCQQRIRR--QLAREKKL 287 (336)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 999999999999999999999999999999999997 99999999999999999999999999999999 9999 557
Q ss_pred HHHHHcc
Q 035707 697 FEAAALL 703 (713)
Q Consensus 697 ~~~a~~l 703 (713)
|++++..
T Consensus 288 ~~~~~~~ 294 (336)
T 1p5q_A 288 YANMFER 294 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777653
No 116
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.61 E-value=1.1e-14 Score=139.01 Aligned_cols=187 Identities=13% Similarity=0.020 Sum_probs=129.9
Q ss_pred HHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhC----CHHHHHHH
Q 035707 459 VALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQG----RLKNAIET 534 (713)
Q Consensus 459 ~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g----~~~~A~~~ 534 (713)
+|+.+|+++.+. .++ .+++.+|.++...+++++|+.+|+++.+. .++.+++.+|.+|.. + ++++|+.+
T Consensus 4 eA~~~~~~aa~~--g~~-~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----g~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDR-RAQYYLADTWVSSGDYQKAEYWAQKAAAQ----GDGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHT--TCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TCHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHHC--CCH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 466777777654 455 77777787777777888888888777765 356777777777776 5 77777777
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCC--CChhHHHHH
Q 035707 535 YVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTS----LSQWRDAEVCLSKSKAINP--YSASGWHST 608 (713)
Q Consensus 535 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~~l 608 (713)
|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+..| .++.+++.+
T Consensus 76 ~~~A~~~------------------------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~L 131 (212)
T 3rjv_A 76 AEKAVEA------------------------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLL 131 (212)
T ss_dssp HHHHHHT------------------------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHH
T ss_pred HHHHHHC------------------------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHH
Confidence 7777542 226677777777776 7777777777777777766 247777777
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc----CCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 035707 609 GLLYEA----KGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIG----GESMATIRCFLTDALRLDRTNTTAWYNLGL 680 (713)
Q Consensus 609 g~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~l~~A~~~~~~al~~~p~~~~~~~~lg~ 680 (713)
|.+|.. .+++++|+.+|+++++. |.++.+++++|.+|.... ..+.++|+.+|+++.+.. ++.+...++.
T Consensus 132 g~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~A~~~l~~ 208 (212)
T 3rjv_A 132 GLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTGCEEFDR 208 (212)
T ss_dssp HHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHH
Confidence 777777 66777777777777776 566667777777776542 112347777777777663 4455555544
No 117
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.61 E-value=1.9e-14 Score=125.75 Aligned_cols=135 Identities=27% Similarity=0.465 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 035707 569 ETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQ 648 (713)
Q Consensus 569 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 648 (713)
.+|+.+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..|++++...|+++.++..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCC
Q 035707 649 IGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALLEESA 707 (713)
Q Consensus 649 ~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~ 707 (713)
.|+++ +|+.++++++...|+++.++..+|.++...|+ +++|..+|++++...|++
T Consensus 82 ~~~~~--~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 82 QGDYD--EAIEYYQKALELDPRSAEAWYNLGNAYYKQGD--YDEAIEYYQKALELDPRS 136 (136)
T ss_dssp TTCHH--HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHSTTC
T ss_pred hcCHH--HHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc--HHHHHHHHHHHHccCCCC
Confidence 99997 99999999999999999999999999999999 999999999999998864
No 118
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.60 E-value=3.9e-14 Score=135.27 Aligned_cols=187 Identities=12% Similarity=0.083 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcC----CHHHHHHH
Q 035707 423 SQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQK----QFADAESV 498 (713)
Q Consensus 423 ~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g----~~~~A~~~ 498 (713)
.+|+..|+++. .. .++.+++.+|.+|...+++++|+.+|+++.+. +++ .+++.+|.++.. + ++++|+.+
T Consensus 3 ~eA~~~~~~aa-~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~-~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQA-EA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDG-DALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHH-HT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCH-HHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHH-HC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCH-HHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 45777787777 43 67788888888888888888888888887654 455 788888888777 6 78888888
Q ss_pred HHHHhhccCCCCcHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHH
Q 035707 499 INDSLDQTGKWDQGELLRTKAKLQIA----QGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDL 574 (713)
Q Consensus 499 ~~~al~~~p~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 574 (713)
|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+..+. ...+.+++.|
T Consensus 76 ~~~A~~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~--------------------~~~~~a~~~L 131 (212)
T 3rjv_A 76 AEKAVEA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSES--------------------DAAVDAQMLL 131 (212)
T ss_dssp HHHHHHT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTS--------------------HHHHHHHHHH
T ss_pred HHHHHHC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCC--------------------cchHHHHHHH
Confidence 8888654 457778888888876 77888888888887765431 0237788888
Q ss_pred HHHHHH----CCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 035707 575 ANVYTS----LSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAK-G-----LQQEALVSFRKALDAEPNHVPSLVSIA 643 (713)
Q Consensus 575 a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g-----~~~eA~~~~~~al~~~p~~~~~~~~la 643 (713)
|.+|.. .+++++|+.+|+++.+. |.++.+++.+|.+|... | ++++|+.+|+++.+.. +..+...++
T Consensus 132 g~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~A~~~l~ 207 (212)
T 3rjv_A 132 GLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTGCEEFD 207 (212)
T ss_dssp HHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHH
Confidence 888887 77888888888888777 55677788888887653 2 7888888888887764 344444444
No 119
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.59 E-value=5.7e-15 Score=147.79 Aligned_cols=105 Identities=11% Similarity=-0.044 Sum_probs=91.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHH
Q 035707 438 ERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRT 517 (713)
Q Consensus 438 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 517 (713)
|.++..++.+|..+...|++++|+..|++++..+|++. .++..+|.++..+|++++|+..++++++.+| .+..+++.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~ 77 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA-VYYTNRALCYLKMQQPEQALADCRRALELDG--QSVKAHFF 77 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT--TCHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CCHHHHHH
Confidence 56778888889999999999999999999998888888 8888889999899999999999999888888 67888888
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhhh
Q 035707 518 KAKLQIAQGRLKNAIETYVNLLAVLQFR 545 (713)
Q Consensus 518 la~~~~~~g~~~~A~~~~~~~l~~~~~~ 545 (713)
+|.++...|++++|+..|++++..+|++
T Consensus 78 lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 78 LGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 8888888888888888888888887754
No 120
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.58 E-value=1.3e-14 Score=145.25 Aligned_cols=201 Identities=6% Similarity=-0.059 Sum_probs=164.0
Q ss_pred cCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhh
Q 035707 472 ARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSA 551 (713)
Q Consensus 472 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 551 (713)
|.+. ..+..+|..+...|++++|+..|++++..+| .+..++..+|.++...|++++|+..++++++.+|++
T Consensus 1 p~~a-~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------ 71 (281)
T 2c2l_A 1 SPSA-QELKEQGNRLFVGRKYPEAAACYGRAITRNP--LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS------ 71 (281)
T ss_dssp CCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC------
T ss_pred ChhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------
Confidence 3445 7899999999999999999999999999998 789999999999999999999999999999987655
Q ss_pred hhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 035707 552 GKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDA 631 (713)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 631 (713)
..+++.+|.+|...|++++|+..|+++++++|+++..+........ ...++..+.......
T Consensus 72 ----------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 132 (281)
T 2c2l_A 72 ----------------VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERR 132 (281)
T ss_dssp ----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTC
T ss_pred ----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999998876433322222222 223334444444456
Q ss_pred CCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHccccC
Q 035707 632 EPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTY-AGASALEAVECFEAAALLEES 706 (713)
Q Consensus 632 ~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~~~A~~~~~~a~~l~p~ 706 (713)
.|.+......++.++ .|+++ +|+..++++++.+|++......++.++... +. +++|.+.|+++.+..+.
T Consensus 133 ~~~~~~i~~~l~~l~--~~~~~--~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~--~~~a~~~f~~a~~~~~~ 202 (281)
T 2c2l_A 133 IHQESELHSYLTRLI--AAERE--RELEECQRNHEGHEDDGHIRAQQACIEAKHDKY--MADMDELFSQVDEKRKK 202 (281)
T ss_dssp CCCCCHHHHHHHHHH--HHHHH--HHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHH--HHHHHHHHHHSSCTTSC
T ss_pred HhhhHHHHHHHHHHH--HHHHH--HHHHHHHhhhccccchhhhhhHHHHHHHHHHHH--HHHHHHHHHhhhccccC
Confidence 778888888887765 57776 999999999999999988888888888776 78 99999999999875444
No 121
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.58 E-value=5.1e-15 Score=132.34 Aligned_cols=112 Identities=17% Similarity=0.028 Sum_probs=105.5
Q ss_pred ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 035707 565 SLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIAR 644 (713)
Q Consensus 565 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~ 644 (713)
|.+..+++.+|.++...|++++|+..|++++..+|.++.+|+.+|.++...|++++|+..|++++.++|+++.+++.+|.
T Consensus 18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 97 (148)
T 2vgx_A 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 44589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 035707 645 VLRQIGGESMATIRCFLTDALRLDRTNTTAWYNL 678 (713)
Q Consensus 645 ~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~l 678 (713)
++...|+++ +|+..|+++++++|+++......
T Consensus 98 ~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~~ 129 (148)
T 2vgx_A 98 CLLQXGELA--EAESGLFLAQELIANXPEFXELS 129 (148)
T ss_dssp HHHHTTCHH--HHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHcCCHH--HHHHHHHHHHHHCcCCCcchHHH
Confidence 999999997 99999999999999887654433
No 122
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.57 E-value=5.7e-15 Score=131.18 Aligned_cols=114 Identities=17% Similarity=0.090 Sum_probs=66.2
Q ss_pred CCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 035707 563 DRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSI 642 (713)
Q Consensus 563 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 642 (713)
..|.+...++.+|..+...|++++|+..|++++..+|.++.+|+.+|.++...|++++|+..|++++.++|+++.+++.+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 34455555555666666666666666666666666665555566666666666666666666666666666555555566
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 035707 643 ARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNL 678 (713)
Q Consensus 643 a~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~l 678 (713)
|.++...|+++ +|+..|+++++++|+++..+...
T Consensus 93 g~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 93 AECHLQLGDLD--GAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HHHHHHTTCHH--HHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHcCCHH--HHHHHHHHHHHhCCCCcchHHHH
Confidence 66666666554 56666666655555555444333
No 123
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.57 E-value=6.4e-12 Score=139.38 Aligned_cols=364 Identities=8% Similarity=-0.053 Sum_probs=268.4
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCc---HHHHHHHHHhhCCCCC--CchhhHHHHHHHh------
Q 035707 278 NIEEAVLLLLILLKKIVLGKIEWDPSIIDHLSFALSVSGE---LWTLAHQVEELLPGVM--GNKKRYCTLALCY------ 346 (713)
Q Consensus 278 ~~eeA~~ll~~~~~~~~l~~~~~~~~~~~~l~~a~~~~g~---~~~a~~~~e~~l~~~~--~~~~~~~~la~~~------ 346 (713)
.++.+..++ ...+...|.....+...+..-.+.|+ ++.+.+.|++++...+ +....|.......
T Consensus 81 ~~~~aR~vy-----EraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~ 155 (679)
T 4e6h_A 81 QWKQVYETF-----DKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDI 155 (679)
T ss_dssp CHHHHHHHH-----HHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCS
T ss_pred cHHHHHHHH-----HHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccc
Confidence 455555444 66778899999999988888888888 9999999999999874 6666776544221
Q ss_pred ---------------hcc-----c-CCCChHHHHHHHHHHH---------hcCCChHHHHHHHHHHHHhhhccCcchHHH
Q 035707 347 ---------------LGE-----E-NSDCNLELLVASKICA---------ENKVCIEEGITYARKALSMLQGKCRQMASI 396 (713)
Q Consensus 347 ---------------~~~-----~-~p~~~~~~~~~a~~~~---------~~g~~~~~A~~~~~~al~~~~~~~~~~~~~ 396 (713)
..+ . +|+....|........ .+++.+ .+..+|++++. .+..+....-.
T Consensus 156 ~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~-~~R~iy~raL~-iP~~~~~~~w~ 233 (679)
T 4e6h_A 156 ITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQ-YIRKLYKTLLC-QPMDCLESMWQ 233 (679)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHH-HHHHHHHHHTT-SCCSSHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHH-HHHHHHHHHHh-CccHHHHHHHH
Confidence 111 3 6777666666654432 233445 78888999886 33222100000
Q ss_pred HHHH-------------HH---------HH-Hh-------hccc-ccc------------------c---------HHHH
Q 035707 397 ANCL-------------LG---------VL-LS-------SQSR-SVV------------------S---------DSKR 418 (713)
Q Consensus 397 a~~~-------------lg---------~~-~~-------~~~~-~~~------------------~---------~~~~ 418 (713)
.+.. +. .. +. ...+ ... . .++.
T Consensus 234 ~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk 313 (679)
T 4e6h_A 234 RYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWES 313 (679)
T ss_dssp HHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHH
Confidence 0000 00 00 00 0000 000 0 0111
Q ss_pred Hh--------cHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhhcCCchHHHHHHHHHHHHc
Q 035707 419 IL--------KQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVAL-YYAKKLLNLEARSNVKGYLLLARVLSAQ 489 (713)
Q Consensus 419 ~~--------~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~~l~~~p~~~~~~~~~la~~~~~~ 489 (713)
.. ..+.....|++++ ...|.++..|+..+..+...|+.++|. ..|++++...|.+. ..|...+.+....
T Consensus 314 ~~~~~l~~~~~~~Rv~~~Ye~aL-~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~-~Lwl~~a~~ee~~ 391 (679)
T 4e6h_A 314 DNKLELSDDLHKARMTYVYMQAA-QHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSA-VLAFSLSEQYELN 391 (679)
T ss_dssp TCTTCCCHHHHHHHHHHHHHHHH-HHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHT
T ss_pred hCCccccchhhHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHh
Confidence 11 2344567899999 999999999999999999999999997 99999999999887 8899999999999
Q ss_pred CCHHHHHHHHHHHhhcc-----------CCC---------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhh
Q 035707 490 KQFADAESVINDSLDQT-----------GKW---------DQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSF 549 (713)
Q Consensus 490 g~~~~A~~~~~~al~~~-----------p~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 549 (713)
|++++|..+|++++... |.. ....+|...+.+..+.|..+.|..+|.++++..|.
T Consensus 392 ~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~----- 466 (679)
T 4e6h_A 392 TKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL----- 466 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-----
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----
Confidence 99999999999999752 310 13457888899999999999999999999886221
Q ss_pred hhhhhhhhhcccCCCccHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 035707 550 SAGKNLVKNRQNHDRSLEMETWHDLANVYTSLS-QWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKA 628 (713)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~a 628 (713)
....+|...+.+....+ +++.|..+|+++++..|+++..|...+......|+.+.|..+|+++
T Consensus 467 ----------------~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lfera 530 (679)
T 4e6h_A 467 ----------------VTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESS 530 (679)
T ss_dssp ----------------SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ----------------CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 11456667777776765 4899999999999999999999999999999999999999999999
Q ss_pred HhcCCC---CHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHH
Q 035707 629 LDAEPN---HVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTT 673 (713)
Q Consensus 629 l~~~p~---~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~ 673 (713)
+...|+ ....|......-...|+.+ .+..+.+++.+..|+++.
T Consensus 531 l~~~~~~~~~~~lw~~~~~fE~~~G~~~--~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 531 IDKISDSHLLKMIFQKVIFFESKVGSLN--SVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp TTTSSSTTHHHHHHHHHHHHHHHTCCSH--HHHHHHHHHHHHSTTCCH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCcH
Confidence 998883 5678888888888999987 999999999999998754
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.56 E-value=8.5e-15 Score=160.41 Aligned_cols=191 Identities=13% Similarity=0.126 Sum_probs=169.0
Q ss_pred CHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcc
Q 035707 491 QFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGR----------LKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQ 560 (713)
Q Consensus 491 ~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 560 (713)
..++|+..+++++..+| ++..+|...+.++...|+ ++++++.+++++..+|++
T Consensus 44 ~~eeal~~~~~~l~~nP--~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~--------------- 106 (567)
T 1dce_A 44 LDESVLELTSQILGANP--DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS--------------- 106 (567)
T ss_dssp CSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC---------------
T ss_pred CCHHHHHHHHHHHHHCc--hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC---------------
Confidence 34567788888888877 677788888888777777 899999999999998766
Q ss_pred cCCCccHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHH
Q 035707 561 NHDRSLEMETWHDLANVYTSLS--QWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKG-LQQEALVSFRKALDAEPNHVP 637 (713)
Q Consensus 561 ~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~eA~~~~~~al~~~p~~~~ 637 (713)
..+|+..++++...+ ++++++.+++++++++|.+..+|...+.+....| .++++++++.++++.+|.+..
T Consensus 107 -------y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~s 179 (567)
T 1dce_A 107 -------YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS 179 (567)
T ss_dssp -------HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHH
T ss_pred -------HHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCcc
Confidence 999999999999999 7799999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC------------ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHH------------H
Q 035707 638 SLVSIARVLRQIGGE------------SMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALE------------A 693 (713)
Q Consensus 638 ~~~~la~~~~~~g~~------------~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~------------A 693 (713)
+|..++.++...++. .++++++++.+++..+|++..+|+.++.++...++ +++ |
T Consensus 180 aW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~--~~~~~~~~~~~~~~~~ 257 (567)
T 1dce_A 180 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP--HDVLCCVHVSREEACL 257 (567)
T ss_dssp HHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC--CSCEEEEEEETTTTEE
T ss_pred HHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC--ccceeeeeeccCCceE
Confidence 999999999986322 13499999999999999999999999999999998 777 6
Q ss_pred HHHHHHHHccccCC
Q 035707 694 VECFEAAALLEESA 707 (713)
Q Consensus 694 ~~~~~~a~~l~p~~ 707 (713)
+.+|.+++.++|..
T Consensus 258 ~~~f~~~i~~~~~~ 271 (567)
T 1dce_A 258 SVCFSRPLTVGSRM 271 (567)
T ss_dssp EEEEEEEECTTBTT
T ss_pred EEEeccceeccccc
Confidence 67788888887764
No 125
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.56 E-value=5.7e-16 Score=159.34 Aligned_cols=199 Identities=12% Similarity=0.019 Sum_probs=147.3
Q ss_pred HhcHHHHHHHHHH----HHHhhCCCCHHHHHHHHHHHH------------HcCCHHHHHHHHHHHHhhhcCCchHHHHHH
Q 035707 419 ILKQSQALVALET----AEKTMRERDPYIIYHLCLENA------------EQRKLDVALYYAKKLLNLEARSNVKGYLLL 482 (713)
Q Consensus 419 ~~~~~~A~~~~~~----al~~~~p~~~~~~~~la~~~~------------~~g~~~~A~~~~~~~l~~~p~~~~~~~~~l 482 (713)
.+.+++|+..+.. ++ .+.|.. ++..+|.... ..+++++|+..+++++...|... .++..+
T Consensus 78 ~~~~e~al~~~~~Ge~~~l-~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a-~~~~~~ 153 (336)
T 1p5q_A 78 PYGLERAIQRMEKGEHSIV-YLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQS-TIVKER 153 (336)
T ss_dssp CHHHHHHHTTCCTTCEEEE-EECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHH-HHHHHH
T ss_pred chHHHHHHhcCCCCCeEEE-EECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHH-HHHHHH
Confidence 4567889988888 78 888876 4444444332 45667778888888888888877 888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccC
Q 035707 483 ARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNH 562 (713)
Q Consensus 483 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 562 (713)
|.++...|++++|+..|++++...|..... .. +......|
T Consensus 154 g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~--------------~~-------~~~~~~~~------------------- 193 (336)
T 1p5q_A 154 GTVYFKEGKYKQALLQYKKIVSWLEYESSF--------------SN-------EEAQKAQA------------------- 193 (336)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHTTTCCCC--------------CS-------HHHHHHHH-------------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhhccccC--------------Ch-------HHHHHHHH-------------------
Confidence 999999999999999999998888742110 00 11112222
Q ss_pred CCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 035707 563 DRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSI 642 (713)
Q Consensus 563 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 642 (713)
....+|.++|.+|...|++++|+.+|+++++++|.++.+++.+|.++...|++++|+..|+++++++|++..++..+
T Consensus 194 ---~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l 270 (336)
T 1p5q_A 194 ---LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQL 270 (336)
T ss_dssp ---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 22677888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCCChHHH-HHHHHHHHh
Q 035707 643 ARVLRQIGGESMATI-RCFLTDALR 666 (713)
Q Consensus 643 a~~~~~~g~~~l~~A-~~~~~~al~ 666 (713)
+.++...|+++ +| ...|++++.
T Consensus 271 ~~~~~~~~~~~--~a~~~~~~~~~~ 293 (336)
T 1p5q_A 271 AVCQQRIRRQL--AREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHH
Confidence 88888888876 55 456666554
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.54 E-value=1.4e-13 Score=125.34 Aligned_cols=135 Identities=14% Similarity=0.065 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 035707 567 EMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVL 646 (713)
Q Consensus 567 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~ 646 (713)
.+..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHH--HHHHHhCCCCHHHHHHHHHHHHcccc
Q 035707 647 RQIGGESMATIRCFLTDALRLDRTNTTAWYNLG--LLYKTYAGASALEAVECFEAAALLEE 705 (713)
Q Consensus 647 ~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg--~~~~~~g~~~~~~A~~~~~~a~~l~p 705 (713)
...|+++ +|+.+|+++++.+|+++.++..++ ..+...|+ +++|+.+++++..+.+
T Consensus 92 ~~~~~~~--~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~~~~~~~ 148 (166)
T 1a17_A 92 MALGKFR--AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA--FERAIAGDEHKRSVVD 148 (166)
T ss_dssp HHTTCHH--HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHhccHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH--HHHHHHcccchHHHhc
Confidence 9999997 999999999999999999885554 44888999 9999999999877543
No 127
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.54 E-value=9.2e-14 Score=120.40 Aligned_cols=117 Identities=16% Similarity=0.113 Sum_probs=110.0
Q ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 035707 566 LEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARV 645 (713)
Q Consensus 566 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~ 645 (713)
..+..|..+|..+...|++++|+..|++++.++|.++.+|..+|.++...|++++|+..|+++++++|+++.++..+|.+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 34788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCChHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHH
Q 035707 646 LRQIGGESMATIRCFLTDALRLD------RTNTTAWYNLGLLYKT 684 (713)
Q Consensus 646 ~~~~g~~~l~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~ 684 (713)
+...|+++ +|+..|+++++++ |+++.++..++.+...
T Consensus 82 ~~~~~~~~--~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 82 QIAVKEYA--SALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHTTCHH--HHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHhCHH--HHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 99999997 9999999999999 9999999888887654
No 128
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.54 E-value=1.2e-13 Score=131.83 Aligned_cols=133 Identities=16% Similarity=0.168 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 035707 568 METWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLR 647 (713)
Q Consensus 568 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~ 647 (713)
...++.+|..+...|++++|+..|++++ +| ++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 5667899999999999999999999986 34 78899999999999999999999999999999999999999999999
Q ss_pred HhcCCChHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCC
Q 035707 648 QIGGESMATIRCFLTDALRLDRTNT----------------TAWYNLGLLYKTYAGASALEAVECFEAAALLEESA 707 (713)
Q Consensus 648 ~~g~~~l~~A~~~~~~al~~~p~~~----------------~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~ 707 (713)
..|+++ +|+..|+++++..|++. .+++++|.++...|+ +++|+.+|++++++.|++
T Consensus 83 ~~~~~~--~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 83 QTEKYD--LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE--WKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HTTCHH--HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCCSG
T ss_pred HcccHH--HHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC--HHHHHHHHHHHHHcCccc
Confidence 999997 99999999999888877 999999999999999 999999999999999865
No 129
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.54 E-value=2.1e-14 Score=127.52 Aligned_cols=117 Identities=10% Similarity=0.016 Sum_probs=110.3
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhC
Q 035707 589 VCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLD 668 (713)
Q Consensus 589 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~ 668 (713)
..|++++.++|.+...++.+|..+...|++++|+..|++++..+|+++.+|..+|.++...|+++ +|+..|++++.++
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~--~A~~~~~~al~~~ 82 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYE--QALQSYSYGALMD 82 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHC
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHH--HHHHHHHHHHhcC
Confidence 56788899999999999999999999999999999999999999999999999999999999997 9999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCCCC
Q 035707 669 RTNTTAWYNLGLLYKTYAGASALEAVECFEAAALLEESAPV 709 (713)
Q Consensus 669 p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~~~ 709 (713)
|+++.+++.+|.+|...|+ +++|+.+|++++++.|++|.
T Consensus 83 p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGD--LDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHTCGG
T ss_pred CCCcHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCcc
Confidence 9999999999999999999 99999999999999998874
No 130
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.54 E-value=4.5e-14 Score=130.60 Aligned_cols=128 Identities=20% Similarity=0.217 Sum_probs=118.1
Q ss_pred HHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHhcCC--Ch
Q 035707 578 YTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARV-LRQIGGE--SM 654 (713)
Q Consensus 578 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~--~l 654 (713)
+...|++++|+..+++++..+|.++.+|..+|.++...|++++|+..|++++.++|+++.++..+|.+ +...|++ +
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~- 98 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA- 98 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH-
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH-
Confidence 34578999999999999999999999999999999999999999999999999999999999999999 8899998 6
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCCCC
Q 035707 655 ATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALLEESAPV 709 (713)
Q Consensus 655 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~~~ 709 (713)
+|+..++++++.+|+++.+++.+|.++...|+ +++|+.+|++++++.|+++.
T Consensus 99 -~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 99 -QTRAMIDKALALDSNEITALMLLASDAFMQAN--YAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp -HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTCCTTSC
T ss_pred -HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccc--HHHHHHHHHHHHhhCCCCcc
Confidence 99999999999999999999999999999999 99999999999999998864
No 131
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.53 E-value=4e-13 Score=117.21 Aligned_cols=132 Identities=24% Similarity=0.369 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 035707 478 GYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVK 557 (713)
Q Consensus 478 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 557 (713)
+|..+|.++...|++++|+..++++++..| .+...+..++.++...|++++|+..+++++...|..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------------ 68 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP--RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------------ 68 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC--cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc------------
Confidence 344444444444444444444444444444 334444444444444444444444444444443221
Q ss_pred hcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 035707 558 NRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEP 633 (713)
Q Consensus 558 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 633 (713)
..++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..|++++..+|
T Consensus 69 ----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 69 ----------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp ----------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred ----------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 344444455555555555555555555554444444455555555555555555555555544444
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.51 E-value=2.2e-13 Score=118.80 Aligned_cols=125 Identities=15% Similarity=0.058 Sum_probs=119.3
Q ss_pred cCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 035707 561 NHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLV 640 (713)
Q Consensus 561 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 640 (713)
....+.....|..+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..|++++..+|++..++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 88 (133)
T 2lni_A 9 SHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYT 88 (133)
T ss_dssp CCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHH
Confidence 34557789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q 035707 641 SIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAG 687 (713)
Q Consensus 641 ~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 687 (713)
.+|.++...|+++ +|+.+|+++++.+|++..++..++.++...|+
T Consensus 89 ~la~~~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 89 RKAAALEAMKDYT--KAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHTTCHH--HHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhHH--HHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 9999999999997 99999999999999999999999999998875
No 133
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.51 E-value=5.8e-14 Score=132.54 Aligned_cols=130 Identities=15% Similarity=0.029 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh----------------hHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 035707 568 METWHDLANVYTSLSQWRDAEVCLSKSKAINPYSA----------------SGWHSTGLLYEAKGLQQEALVSFRKALDA 631 (713)
Q Consensus 568 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 631 (713)
...+..+|..+...|++++|+.+|++++.+.|.++ .++..+|.++...|++++|+..|++++.+
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 66777777777777777777777777777777666 77888888888888888888888888888
Q ss_pred CCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHH
Q 035707 632 EPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAV-ECFEAAA 701 (713)
Q Consensus 632 ~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~-~~~~~a~ 701 (713)
+|+++.+++.+|.++...|+++ +|+.+|+++++++|+++.++..++.++...++ ..++. ..|.+.+
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~f 184 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLE--EAKENLYKAASLNPNNLDIRNSYELCVNKLKE--ARKKDKLTFGGMF 184 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHH--HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH--HHC----------
T ss_pred CcccHHHHHHHHHHHHHcccHH--HHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH--HHHHHHHHHHHHh
Confidence 8888888888888888888886 88888888888888888888888888888877 77776 4444443
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.51 E-value=3.5e-14 Score=155.50 Aligned_cols=186 Identities=11% Similarity=0.085 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCC----------HHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhC-
Q 035707 458 DVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQ----------FADAESVINDSLDQTGKWDQGELLRTKAKLQIAQG- 526 (713)
Q Consensus 458 ~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g- 526 (713)
++|++.+++++..+|++. .+|+..+.++...|+ +++++..+++++..+| .+..+|...+.++...+
T Consensus 46 eeal~~~~~~l~~nP~~~-taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p--K~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 46 ESVLELTSQILGANPDFA-TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP--KSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp HHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHCchhH-HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHccc
Confidence 566777777777777777 777777777777777 7888888888888888 67888888888888888
Q ss_pred -CHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCChhH
Q 035707 527 -RLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLS-QWRDAEVCLSKSKAINPYSASG 604 (713)
Q Consensus 527 -~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~ 604 (713)
+++++++.++++++.+|.+ ..+|...+.+....| .+++++++++++++.+|.+..+
T Consensus 123 ~~~~~el~~~~k~l~~d~~N----------------------~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~sa 180 (567)
T 1dce_A 123 PNWARELELCARFLEADERN----------------------FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS 180 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTTC----------------------HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHH
T ss_pred ccHHHHHHHHHHHHhhcccc----------------------ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccH
Confidence 6688888888888887665 888888999988888 8899999999999999999999
Q ss_pred HHHHHHHHHHc--------------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHH------------HH
Q 035707 605 WHSTGLLYEAK--------------GLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMAT------------IR 658 (713)
Q Consensus 605 ~~~lg~~~~~~--------------g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~------------A~ 658 (713)
|+.++.++... +.++++++++.+++.++|++..+|+.++.++...+++. + |+
T Consensus 181 W~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~--~~~~~~~~~~~~~~~ 258 (567)
T 1dce_A 181 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHD--VLCCVHVSREEACLS 258 (567)
T ss_dssp HHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCS--CEEEEEEETTTTEEE
T ss_pred HHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCcc--ceeeeeeccCCceEE
Confidence 99999988874 56799999999999999999999999999999988865 4 44
Q ss_pred HHHHHHHhhCCC
Q 035707 659 CFLTDALRLDRT 670 (713)
Q Consensus 659 ~~~~~al~~~p~ 670 (713)
..|.+++.++|.
T Consensus 259 ~~f~~~i~~~~~ 270 (567)
T 1dce_A 259 VCFSRPLTVGSR 270 (567)
T ss_dssp EEEEEEECTTBT
T ss_pred EEeccceecccc
Confidence 556777766665
No 135
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.51 E-value=1.9e-13 Score=124.55 Aligned_cols=121 Identities=11% Similarity=0.075 Sum_probs=113.0
Q ss_pred CCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 035707 562 HDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVS 641 (713)
Q Consensus 562 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 641 (713)
...+..+..|..+|.++...|++++|+.+|++++.++|.++.+|+.+|.++...|++++|+..|++++.++|+++.+++.
T Consensus 5 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 84 (164)
T 3sz7_A 5 MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSR 84 (164)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 035707 642 IARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKT 684 (713)
Q Consensus 642 la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 684 (713)
+|.++...|+++ +|+.+|+++++++|+++.+|+.++.....
T Consensus 85 lg~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 125 (164)
T 3sz7_A 85 LGLARFDMADYK--GAKEAYEKGIEAEGNGGSDAMKRGLETTK 125 (164)
T ss_dssp HHHHHHHTTCHH--HHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHccCHH--HHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 999999999997 99999999999999999888777665443
No 136
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.50 E-value=3.5e-13 Score=116.96 Aligned_cols=122 Identities=19% Similarity=0.178 Sum_probs=117.9
Q ss_pred CccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 035707 564 RSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIA 643 (713)
Q Consensus 564 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la 643 (713)
.+.....+..+|..+...|++++|+..|++++...|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 45668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q 035707 644 RVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAG 687 (713)
Q Consensus 644 ~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 687 (713)
.++...|+++ +|+.+++++++.+|+++.++..+|.++...|+
T Consensus 88 ~~~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 LALSSLNKHV--EAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHTTCHH--HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHH--HHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 9999999997 99999999999999999999999999999987
No 137
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.49 E-value=4.7e-13 Score=127.76 Aligned_cols=131 Identities=8% Similarity=0.006 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 035707 478 GYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVK 557 (713)
Q Consensus 478 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 557 (713)
.++.+|.++...|++++|+..|++++ . .+..++..+|.++...|++++|+..|++++..+|.+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------------ 70 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--D---PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL------------ 70 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--S---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--C---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------------
Confidence 34455555555555555555555553 1 145555555555555555555555555555554332
Q ss_pred hcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh----------------hHHHHHHHHHHHcCCHHHH
Q 035707 558 NRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSA----------------SGWHSTGLLYEAKGLQQEA 621 (713)
Q Consensus 558 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~lg~~~~~~g~~~eA 621 (713)
+.++..+|.+|...|++++|+..|+++++..|.+. .+++.+|.++...|++++|
T Consensus 71 ----------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 140 (213)
T 1hh8_A 71 ----------AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA 140 (213)
T ss_dssp ----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHH
T ss_pred ----------hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHH
Confidence 45555555555555555555555555555554443 4555555555555555555
Q ss_pred HHHHHHHHhcCCCC
Q 035707 622 LVSFRKALDAEPNH 635 (713)
Q Consensus 622 ~~~~~~al~~~p~~ 635 (713)
+..|++++.++|++
T Consensus 141 ~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 141 EEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHTTCCSG
T ss_pred HHHHHHHHHcCccc
Confidence 55555555555544
No 138
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.48 E-value=6.8e-13 Score=133.74 Aligned_cols=173 Identities=11% Similarity=0.053 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHH
Q 035707 512 GELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCL 591 (713)
Q Consensus 512 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 591 (713)
...+...+..+...|++++|++.+.+++...+... ........++.+|.++...|++++|+.++
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 138 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHP----------------EFQQFLQWQYYVAAYVLKKVDYEYCILEL 138 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCH----------------HHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCCh----------------hHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 34455666677777777777777777776543210 00112445566778888888888888888
Q ss_pred HHHHhcCCCC------hhHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCCCH----HHHHHHHHHHHHhcCCChHHHH
Q 035707 592 SKSKAINPYS------ASGWHSTGLLYEAKGLQQEALVSFRKAL---DAEPNHV----PSLVSIARVLRQIGGESMATIR 658 (713)
Q Consensus 592 ~~al~~~p~~------~~~~~~lg~~~~~~g~~~eA~~~~~~al---~~~p~~~----~~~~~la~~~~~~g~~~l~~A~ 658 (713)
++++...+.. ..+++.+|.+|...|++++|+.+|++++ ...|++. .+++++|.+|..+|+++ +|+
T Consensus 139 ~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~--~Al 216 (293)
T 2qfc_A 139 KKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYE--ESL 216 (293)
T ss_dssp HHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHH--HHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHH--HHH
Confidence 8888765433 4577888888888888888888888888 3445532 57788888888888886 888
Q ss_pred HHHHHHHhhCCC------CHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHccc
Q 035707 659 CFLTDALRLDRT------NTTAWYNLGLLYKTYAGASALEA-VECFEAAALLE 704 (713)
Q Consensus 659 ~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~~~A-~~~~~~a~~l~ 704 (713)
.++++++++.++ ...+++++|.+|...|+ +++| ..+|++|+.+.
T Consensus 217 ~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~--~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 217 YQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY--EEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHH
Confidence 888888876432 15678888888888888 8888 77788887654
No 139
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.47 E-value=2.1e-13 Score=119.91 Aligned_cols=117 Identities=15% Similarity=0.104 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 035707 568 METWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLR 647 (713)
Q Consensus 568 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~ 647 (713)
...+..+|..++..|++++|+.+|+++++++|+++.. .++...|.+..+|.++|.++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~----------------------~a~~~~~~~a~a~~n~g~al~ 68 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE----------------------EAFDHAGFDAFCHAGLAEALA 68 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT----------------------SCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch----------------------hhhhhccchHHHHHHHHHHHH
Confidence 6667777777777777777777777777777763321 000001112236666666666
Q ss_pred HhcCCChHHHHHHHHHHHhh-------CCCCHHHH----HHHHHHHHHhCCCCHHHHHHHHHHHHccccCCCCC
Q 035707 648 QIGGESMATIRCFLTDALRL-------DRTNTTAW----YNLGLLYKTYAGASALEAVECFEAAALLEESAPVE 710 (713)
Q Consensus 648 ~~g~~~l~~A~~~~~~al~~-------~p~~~~~~----~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~~~~ 710 (713)
.+|+++ +|+..+++++++ +|+++.+| +++|.++..+|+ +++|+.+|+++++++|++..+
T Consensus 69 ~Lgr~~--eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr--~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 69 GLRSFD--EALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGR--GAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HTTCHH--HHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHCCSC
T ss_pred HCCCHH--HHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCC--HHHHHHHHHHHHhcCCCcHHH
Confidence 666665 666666666666 88887778 888888888888 888888888888888776643
No 140
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.47 E-value=9.2e-13 Score=114.03 Aligned_cols=117 Identities=14% Similarity=0.083 Sum_probs=100.2
Q ss_pred CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHH
Q 035707 510 DQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEV 589 (713)
Q Consensus 510 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 589 (713)
.....+..+|..+...|++++|+..|++++..+|.+ +.+|..+|.++...|++++|+.
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~~a~~~~~~~~~~~A~~ 59 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED----------------------ARGYSNRAAALAKLMSFPEAIA 59 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------------------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----------------------hHHHHHHHHHHHHhcCHHHHHH
Confidence 356678888888899999999999999988887654 7888899999999999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHH
Q 035707 590 CLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAE------PNHVPSLVSIARVLRQ 648 (713)
Q Consensus 590 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~------p~~~~~~~~la~~~~~ 648 (713)
.|+++++++|.++.+++.+|.++...|++++|+..|++++.++ |++..++..++.+...
T Consensus 60 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 60 DCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 9999999999989999999999999999999999999999988 8888888777776543
No 141
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.46 E-value=2.5e-12 Score=129.59 Aligned_cols=179 Identities=11% Similarity=0.049 Sum_probs=143.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCch-----HHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC---
Q 035707 438 ERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNV-----KGYLLLARVLSAQKQFADAESVINDSLDQTGKW--- 509 (713)
Q Consensus 438 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--- 509 (713)
|.....+...+..+...|++++|+..+.++++..+.... ..+..+|.++...|++++|+..+++++...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 334456677888999999999999999999988765431 245678889999999999999999999865321
Q ss_pred -CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHH
Q 035707 510 -DQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAE 588 (713)
Q Consensus 510 -~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 588 (713)
....++..+|.+|...|++++|+..|++++...... .........+++++|.+|...|++++|+
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~---------------~~~~~~~~~~~~nlg~~y~~~~~y~~Al 216 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL---------------HDNEEFDVKVRYNHAKALYLDSRYEESL 216 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS---------------CCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc---------------CccccchHHHHHhHHHHHHHHhhHHHHH
Confidence 125689999999999999999999999999764432 0111112478999999999999999999
Q ss_pred HHHHHHHhcCCC------ChhHHHHHHHHHHHcCCHHHH-HHHHHHHHhc
Q 035707 589 VCLSKSKAINPY------SASGWHSTGLLYEAKGLQQEA-LVSFRKALDA 631 (713)
Q Consensus 589 ~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~eA-~~~~~~al~~ 631 (713)
.++++++.+.+. ...+++.+|.+|...|++++| ..+|++++.+
T Consensus 217 ~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 217 YQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 999999987542 267889999999999999999 7789998864
No 142
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.46 E-value=4.3e-12 Score=127.84 Aligned_cols=172 Identities=12% Similarity=0.061 Sum_probs=141.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchH------HHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCc----HH
Q 035707 444 IYHLCLENAEQRKLDVALYYAKKLLNLEARSNVK------GYLLLARVLSAQKQFADAESVINDSLDQTGKWDQ----GE 513 (713)
Q Consensus 444 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~ 513 (713)
+...+..+...|++++|+..+++++...+..+ . .+..+|.++...+++++|+..+++++...+...+ ..
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHP-EFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCH-HHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCCh-HHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 34456788899999999999999998776655 3 2335888888899999999999999986432222 44
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 035707 514 LLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSK 593 (713)
Q Consensus 514 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 593 (713)
++..+|.+|...|++++|+.+|++++...... ....+....+++++|.+|...|++++|+.++++
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~---------------~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~ 221 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEAL---------------HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK 221 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS---------------SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc---------------ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 78999999999999999999999999875432 123345577999999999999999999999999
Q ss_pred HHhcCCCC------hhHHHHHHHHHHHcCC-HHHHHHHHHHHHhc
Q 035707 594 SKAINPYS------ASGWHSTGLLYEAKGL-QQEALVSFRKALDA 631 (713)
Q Consensus 594 al~~~p~~------~~~~~~lg~~~~~~g~-~~eA~~~~~~al~~ 631 (713)
++++.+.. +.+++.+|.++...|+ +++|+..|++++.+
T Consensus 222 al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 222 AIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99876433 6789999999999994 69999999999864
No 143
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.46 E-value=4.2e-13 Score=115.15 Aligned_cols=101 Identities=17% Similarity=0.078 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 035707 604 GWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYK 683 (713)
Q Consensus 604 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 683 (713)
.++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|+++ +|+..|+++++++|+++.+|+.+|.++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~--~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDG--LAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45666666667777777777777777777777777777777777777765 6777777777777777777777777777
Q ss_pred HhCCCCHHHHHHHHHHHHccccCCC
Q 035707 684 TYAGASALEAVECFEAAALLEESAP 708 (713)
Q Consensus 684 ~~g~~~~~~A~~~~~~a~~l~p~~~ 708 (713)
..|+ +++|+.+|+++++++|+++
T Consensus 97 ~~g~--~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHN--ANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHH--HHHHHHHHHHHHC------
T ss_pred HcCC--HHHHHHHHHHHHHhCcCCC
Confidence 7777 7777777777777766654
No 144
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.45 E-value=3.2e-13 Score=124.80 Aligned_cols=131 Identities=11% Similarity=0.119 Sum_probs=117.9
Q ss_pred HHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh
Q 035707 523 IAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSA 602 (713)
Q Consensus 523 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 602 (713)
...|++++|+..+++++..+|.+ +.+|..+|.+|...|++++|+.+|++++.++|.++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 78 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQN----------------------SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA 78 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSC----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCH
T ss_pred hhccCHHHHHHHHHHHHHhCCCc----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 46789999999999999997654 88999999999999999999999999999999999
Q ss_pred hHHHHHHHH-HHHcCCH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHH
Q 035707 603 SGWHSTGLL-YEAKGLQ--QEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYN 677 (713)
Q Consensus 603 ~~~~~lg~~-~~~~g~~--~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~ 677 (713)
.++..+|.+ +...|++ ++|+..|++++..+|+++.++..+|.++...|+++ +|+..|+++++.+|+++.....
T Consensus 79 ~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~ 154 (177)
T 2e2e_A 79 ELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYA--QAIELWQKVMDLNSPRINRTQL 154 (177)
T ss_dssp HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHTCCTTSCHHHH
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHH--HHHHHHHHHHhhCCCCccHHHH
Confidence 999999999 8899998 99999999999999999999999999999999997 9999999999999998655433
No 145
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.45 E-value=8.6e-12 Score=122.94 Aligned_cols=257 Identities=11% Similarity=-0.020 Sum_probs=185.1
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHH
Q 035707 363 KICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPY 442 (713)
Q Consensus 363 ~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~ 442 (713)
+-.+-.|.|. .++.-. -+ ..+.+. -.....+..+|..+|++... . . .+....
T Consensus 21 kn~fy~G~yq-~~i~e~---~~-~~~~~~---~~~~~~~~Rs~iAlg~~~~~------------------~-~-~~~~~~ 72 (310)
T 3mv2_B 21 KQNYYTGNFV-QCLQEI---EK-FSKVTD---NTLLFYKAKTLLALGQYQSQ------------------D-P-TSKLGK 72 (310)
T ss_dssp HHHHTTTCHH-HHTHHH---HT-SSCCCC---HHHHHHHHHHHHHTTCCCCC------------------C-S-SSTTHH
T ss_pred HHHHHhhHHH-HHHHHH---Hh-cCccch---HHHHHHHHHHHHHcCCCccC------------------C-C-CCHHHH
Confidence 4566789999 888733 23 444443 14555666777555544211 0 1 111222
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHH
Q 035707 443 IIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQ 522 (713)
Q Consensus 443 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~ 522 (713)
+...++..+ . ++ |+..+++.+...+... .++..+|.++...|++++|+.++.+.+..+|.....+++...+.++
T Consensus 73 a~~~la~~~-~-~~---a~~~l~~l~~~~~~~~-~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~ 146 (310)
T 3mv2_B 73 VLDLYVQFL-D-TK---NIEELENLLKDKQNSP-YELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVA 146 (310)
T ss_dssp HHHHHHHHH-T-TT---CCHHHHHTTTTSCCCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHh-c-cc---HHHHHHHHHhcCCCCc-HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHH
Confidence 222233222 2 22 7888998887765555 6778999999999999999999999998876446889999999999
Q ss_pred HHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCCC
Q 035707 523 IAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLS--QWRDAEVCLSKSKAINPY 600 (713)
Q Consensus 523 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~ 600 (713)
...|+++.|.+.++++.+.+|+.... .....+...-+++.+..| ++++|..+|+++....|+
T Consensus 147 L~~~r~d~A~k~l~~~~~~~~d~~~~----------------~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~ 210 (310)
T 3mv2_B 147 LLNNNVSTASTIFDNYTNAIEDTVSG----------------DNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT 210 (310)
T ss_dssp HHTTCHHHHHHHHHHHHHHSCHHHHH----------------HHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS
T ss_pred HHCCCHHHHHHHHHHHHhcCcccccc----------------chHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC
Confidence 99999999999999998886520000 011233333354566556 999999999999988886
Q ss_pred --ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------CCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhC
Q 035707 601 --SASGWHSTGLLYEAKGLQQEALVSFRKALDA----------EPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLD 668 (713)
Q Consensus 601 --~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~ 668 (713)
++..+++ ++..+|++++|...++.+++. +|+++.++.+++.+....|+ +|.++++++.+.+
T Consensus 211 ~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk----~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 211 WKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL----DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC----TTHHHHHHHHHTT
T ss_pred cccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh----HHHHHHHHHHHhC
Confidence 2334444 899999999999999988776 48899999999999999997 5899999999999
Q ss_pred CCCHHHHH
Q 035707 669 RTNTTAWY 676 (713)
Q Consensus 669 p~~~~~~~ 676 (713)
|+++.+..
T Consensus 284 P~hp~i~d 291 (310)
T 3mv2_B 284 HEHAFIKH 291 (310)
T ss_dssp CCCHHHHH
T ss_pred CCChHHHH
Confidence 99986643
No 146
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.45 E-value=9.9e-14 Score=130.93 Aligned_cols=165 Identities=14% Similarity=0.109 Sum_probs=113.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcc
Q 035707 481 LLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQ 560 (713)
Q Consensus 481 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 560 (713)
..+......|+++++.+.++......+ .....+..+|..+...|++++|+..|++++...|.+....... ..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~--~~---- 80 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKV--QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQI--LL---- 80 (198)
T ss_dssp -------------CCCSGGGCCHHHHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHH--HH----
T ss_pred chhhhhhhhhhccccCchhhCCHHHHH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhh--HH----
Confidence 344444555566665555554444333 3455566666666666777777777766666655431100000 00
Q ss_pred cCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 035707 561 NHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLV 640 (713)
Q Consensus 561 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 640 (713)
.........++..+|.++...|++++|+.++++++.++|.++.+++.+|.++...|++++|+..|++++.++|++..++.
T Consensus 81 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 160 (198)
T 2fbn_A 81 DKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRN 160 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 00000124789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCC
Q 035707 641 SIARVLRQIGGES 653 (713)
Q Consensus 641 ~la~~~~~~g~~~ 653 (713)
.++.++...++..
T Consensus 161 ~l~~~~~~~~~~~ 173 (198)
T 2fbn_A 161 SYELCVNKLKEAR 173 (198)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887764
No 147
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.45 E-value=6e-13 Score=121.28 Aligned_cols=108 Identities=20% Similarity=0.132 Sum_probs=103.7
Q ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHH
Q 035707 598 NPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYN 677 (713)
Q Consensus 598 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~ 677 (713)
.+.++..++.+|.++...|++++|+..|++++.++|+++.++..+|.++...|+++ +|+.+|+++++++|+++.+|+.
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~ 84 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHE--KAAEDAELATVVDPKYSKAWSR 84 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHH--HHHHHHHHHHHhCCCCHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999997 9999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHccccCCCC
Q 035707 678 LGLLYKTYAGASALEAVECFEAAALLEESAPV 709 (713)
Q Consensus 678 lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~~~ 709 (713)
+|.+|...|+ +++|+.+|+++++++|+++.
T Consensus 85 lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 85 LGLARFDMAD--YKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHHHHHTTC--HHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHccC--HHHHHHHHHHHHHhCCCchH
Confidence 9999999999 99999999999999999876
No 148
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.44 E-value=2.9e-12 Score=110.02 Aligned_cols=118 Identities=25% Similarity=0.407 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 035707 567 EMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVL 646 (713)
Q Consensus 567 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~ 646 (713)
...+|..+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+..|++++...|+++.++..+|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q 035707 647 RQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYA 686 (713)
Q Consensus 647 ~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 686 (713)
...|+++ +|+.+++++++.+|+++.++..+|.++...|
T Consensus 88 ~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYD--EAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHH--HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHH--HHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999997 9999999999999999999999999998765
No 149
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.44 E-value=9.4e-13 Score=114.08 Aligned_cols=110 Identities=13% Similarity=0.107 Sum_probs=90.0
Q ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-------HH
Q 035707 566 LEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHV-------PS 638 (713)
Q Consensus 566 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~-------~~ 638 (713)
..+.++..+|..+...|++++|+.+|+++++++|.++.+|.++|.+|..+|++++|+..|+++++++|++. .+
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 34778888999999999999999999999999999999999999999999999999999999998877653 46
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 035707 639 LVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNL 678 (713)
Q Consensus 639 ~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~l 678 (713)
+..+|.++...|+++ +|+.+|++++...|+ ++....+
T Consensus 86 ~~~lg~~~~~~~~~~--~A~~~~~kal~~~~~-~~~~~~l 122 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLS--LAVQWFHRSLSEFRD-PELVKKV 122 (127)
T ss_dssp HHHHHHHHHHTTCHH--HHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHcCCHH--HHHHHHHHHHhhCcC-HHHHHHH
Confidence 777888888888876 888888888887774 4444433
No 150
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.44 E-value=1.6e-11 Score=120.95 Aligned_cols=198 Identities=10% Similarity=-0.046 Sum_probs=155.7
Q ss_pred HHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCC--CCHHHHHHHHHHH
Q 035707 374 EGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRE--RDPYIIYHLCLEN 451 (713)
Q Consensus 374 ~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p--~~~~~~~~la~~~ 451 (713)
.|+..+++.+. ..+.+. .++..+|.++ ...|++++|++.+.+.+ ..+| .+.+++..++.++
T Consensus 84 ~a~~~l~~l~~-~~~~~~----~~~~~la~i~-----------~~~g~~eeAL~~l~~~i-~~~~~~~~lea~~l~vqi~ 146 (310)
T 3mv2_B 84 KNIEELENLLK-DKQNSP----YELYLLATAQ-----------AILGDLDKSLETCVEGI-DNDEAEGTTELLLLAIEVA 146 (310)
T ss_dssp TCCHHHHHTTT-TSCCCH----HHHHHHHHHH-----------HHHTCHHHHHHHHHHHH-TSSCSTTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHh-cCCCCc----HHHHHHHHHH-----------HHcCCHHHHHHHHHHHh-ccCCCcCcHHHHHHHHHHH
Confidence 46788888877 334444 6678999999 88999999999999999 8886 7889999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhhcC-----CchHHHHHHHHHHHHcC--CHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHH
Q 035707 452 AEQRKLDVALYYAKKLLNLEAR-----SNVKGYLLLARVLSAQK--QFADAESVINDSLDQTGKWDQGELLRTKAKLQIA 524 (713)
Q Consensus 452 ~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~ 524 (713)
..+|+.+.|.+.++++.+.+|+ +.......-+.+....| ++.+|..+|+++.+..|.+.....++. ++..
T Consensus 147 L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~ 223 (310)
T 3mv2_B 147 LLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQ 223 (310)
T ss_dssp HHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHH
T ss_pred HHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHH
Confidence 9999999999999999998882 32133333354566666 999999999999888873223444444 8999
Q ss_pred hCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhH
Q 035707 525 QGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASG 604 (713)
Q Consensus 525 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 604 (713)
+|++++|.+.++.+++..|+-.+ .....|.++.++.+++.+....|+ +|.++++++.+..|+++.+
T Consensus 224 ~g~~~eAe~~L~~l~~~~p~~~~------------k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 224 QRNIAEAQGIVELLLSDYYSVEQ------------KENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HTCHHHHHHHHHHHHSHHHHTTT------------CHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred cCCHHHHHHHHHHHHHhcccccc------------cccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 99999999999988888664100 000025679999999989999998 8999999999999999876
Q ss_pred H
Q 035707 605 W 605 (713)
Q Consensus 605 ~ 605 (713)
.
T Consensus 290 ~ 290 (310)
T 3mv2_B 290 K 290 (310)
T ss_dssp H
T ss_pred H
Confidence 4
No 151
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.43 E-value=3.6e-12 Score=110.47 Aligned_cols=121 Identities=17% Similarity=0.250 Sum_probs=106.7
Q ss_pred CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHH
Q 035707 510 DQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEV 589 (713)
Q Consensus 510 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 589 (713)
.+...+..+|..+...|++++|+..|++++...|.+ +.++..+|.++...|++++|+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----------------------~~~~~~~a~~~~~~~~~~~A~~ 67 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN----------------------AVYFCNRAAAYSKLGNYAGAVQ 67 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------------------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC----------------------HHHHHHHHHHHHHhhchHHHHH
Confidence 456778888899999999999999999988886543 7788899999999999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC
Q 035707 590 CLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGE 652 (713)
Q Consensus 590 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 652 (713)
++++++...|.++.++..+|.++...|++++|+..|++++..+|++..++..++.++...|++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 68 DCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999988999999999999999999999999999999999999999999999888876
No 152
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.43 E-value=1.7e-13 Score=147.14 Aligned_cols=146 Identities=12% Similarity=0.039 Sum_probs=129.6
Q ss_pred hCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---
Q 035707 525 QGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYS--- 601 (713)
Q Consensus 525 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--- 601 (713)
.+++++|+..|+.++...|.. ...|..+|..+...|++++|+.+|++++.+.|.+
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~----------------------a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~ 304 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQ----------------------AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGL 304 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHH----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC
T ss_pred hhhcccCcchhhcCHHHHHHH----------------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccC
Confidence 445666666677666665544 8899999999999999999999999999999988
Q ss_pred ------------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCC
Q 035707 602 ------------ASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDR 669 (713)
Q Consensus 602 ------------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p 669 (713)
..+|+++|.++..+|++++|+..|++++.++|+++.+++.+|.+|..+|+++ +|+..|+++++++|
T Consensus 305 ~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~--~A~~~~~~al~l~P 382 (457)
T 1kt0_A 305 SEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFE--SAKGDFEKVLEVNP 382 (457)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHTTC-
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHH--HHHHHHHHHHHhCC
Confidence 6899999999999999999999999999999999999999999999999997 99999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 035707 670 TNTTAWYNLGLLYKTYAGASALEAVEC 696 (713)
Q Consensus 670 ~~~~~~~~lg~~~~~~g~~~~~~A~~~ 696 (713)
++..++..++.++...|+ +++|...
T Consensus 383 ~~~~a~~~l~~~~~~~~~--~~~a~~~ 407 (457)
T 1kt0_A 383 QNKAARLQISMCQKKAKE--HNERDRR 407 (457)
T ss_dssp ---CHHHHHHHHHHHHHH--HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 999999999999999999 9888743
No 153
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.43 E-value=3.9e-13 Score=116.51 Aligned_cols=102 Identities=17% Similarity=0.107 Sum_probs=95.3
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCH-------H
Q 035707 601 SASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNT-------T 673 (713)
Q Consensus 601 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~-------~ 673 (713)
.+.++..+|..+...|++++|+..|+++++++|+++.++.++|.+|..+|+++ +|+..++++++++|++. .
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~--~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFA--ECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHH--HHHHHHHHHHHhCcccchhhHHHHH
Confidence 45678899999999999999999999999999999999999999999999997 99999999999988653 5
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHccccC
Q 035707 674 AWYNLGLLYKTYAGASALEAVECFEAAALLEES 706 (713)
Q Consensus 674 ~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~ 706 (713)
++.++|.++...|+ +++|+++|++++...|+
T Consensus 85 ~~~~lg~~~~~~~~--~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 85 AMSRAGNAFQKQND--LSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHHTTC--HHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHcCC--HHHHHHHHHHHHhhCcC
Confidence 78899999999999 99999999999998875
No 154
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.43 E-value=6.1e-12 Score=114.40 Aligned_cols=135 Identities=13% Similarity=0.018 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCC
Q 035707 395 SIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARS 474 (713)
Q Consensus 395 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 474 (713)
+..+..+|.++ ...|++++|+..|++++ ..+|.++.+++.+|.++...|++++|+..+++++..+|.+
T Consensus 13 ~~~~~~~a~~~-----------~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~ 80 (166)
T 1a17_A 13 AEELKTQANDY-----------FKAKDYENAIKFYSQAI-ELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY 80 (166)
T ss_dssp HHHHHHHHHHH-----------HHTTCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHH-----------HHccCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 57888999999 88999999999999999 9999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHH--HHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 035707 475 NVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELL--RTKAKLQIAQGRLKNAIETYVNLLAVLQF 544 (713)
Q Consensus 475 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 544 (713)
. .++..+|.++...|++++|+.+|+++++..| .+..++ ..++..+...|++++|+..+.+.....+.
T Consensus 81 ~-~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 149 (166)
T 1a17_A 81 I-KGYYRRAASNMALGKFRAALRDYETVVKVKP--HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS 149 (166)
T ss_dssp H-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcc
Confidence 8 9999999999999999999999999999998 566666 45555588899999999999998877543
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.43 E-value=3e-12 Score=108.69 Aligned_cols=115 Identities=17% Similarity=0.173 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 035707 567 EMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVL 646 (713)
Q Consensus 567 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~ 646 (713)
.+..+..+|..+...|++++|+.+|++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 035707 647 RQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYK 683 (713)
Q Consensus 647 ~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 683 (713)
...|+++ +|+..++++++.+|+++.++..++.+..
T Consensus 83 ~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 83 EFLNRFE--EAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHTTCHH--HHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHhhHH--HHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 9999997 9999999999999999999999888753
No 156
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.43 E-value=8e-13 Score=113.39 Aligned_cols=104 Identities=13% Similarity=0.119 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 035707 568 METWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLR 647 (713)
Q Consensus 568 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~ 647 (713)
...++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++.
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCChHHHHHHHHHHHhhCCCCHH
Q 035707 648 QIGGESMATIRCFLTDALRLDRTNTT 673 (713)
Q Consensus 648 ~~g~~~l~~A~~~~~~al~~~p~~~~ 673 (713)
..|+++ +|+..|+++++.+|+++.
T Consensus 97 ~~g~~~--~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 97 NEHNAN--AALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHH--HHHHHHHHHHC-------
T ss_pred HcCCHH--HHHHHHHHHHHhCcCCCC
Confidence 999997 999999999999998653
No 157
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.42 E-value=1.3e-12 Score=131.68 Aligned_cols=172 Identities=12% Similarity=0.072 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 035707 514 LLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSK 593 (713)
Q Consensus 514 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 593 (713)
.+...+..+...|++++|+..+++++...+..+. .......+..+|.++...|++++|+.+|++
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~ 140 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPE----------------FQQFLQWQYYVAAYVLKKVDYEYCILELKK 140 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHH----------------HHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChH----------------HHHHHHHHHHHHHHHHcccCHHHHHHHHHH
Confidence 3445577888999999999999999875432200 001133455689999999999999999999
Q ss_pred HHhcCCCC------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHhcCCChHHHHHH
Q 035707 594 SKAINPYS------ASGWHSTGLLYEAKGLQQEALVSFRKALDA-------EPNHVPSLVSIARVLRQIGGESMATIRCF 660 (713)
Q Consensus 594 al~~~p~~------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~l~~A~~~ 660 (713)
++.+.+.. ..++..+|.+|...|++++|+.+|++++.. .+....+++++|.+|..+|+++ +|+.+
T Consensus 141 al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~--~A~~~ 218 (293)
T 3u3w_A 141 LLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYE--ESLYQ 218 (293)
T ss_dssp HHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHH--HHHHH
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHH--HHHHH
Confidence 99865443 237899999999999999999999999952 1223458899999999999997 99999
Q ss_pred HHHHHhhCCCC------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHcccc
Q 035707 661 LTDALRLDRTN------TTAWYNLGLLYKTYA-GASALEAVECFEAAALLEE 705 (713)
Q Consensus 661 ~~~al~~~p~~------~~~~~~lg~~~~~~g-~~~~~~A~~~~~~a~~l~p 705 (713)
+++++++.+.. +.+++++|.+|...| . +++|+.+|++|+.+..
T Consensus 219 ~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~--~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 219 VNKAIEISCRINSMALIGQLYYQRGECLRKLEYE--EAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHH
Confidence 99999876433 789999999999999 5 5999999999998643
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.42 E-value=1.3e-12 Score=114.76 Aligned_cols=121 Identities=17% Similarity=0.172 Sum_probs=106.4
Q ss_pred ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 035707 565 SLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIAR 644 (713)
Q Consensus 565 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~ 644 (713)
+..+..+..+|.++...|++++|+.+|++++..+|.++.+++.+|.++...|++++|+..|++++.++|+++.++..+|.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 45588899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCChHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHhCC
Q 035707 645 VLRQIGGESMATIRCFLTDALRLDRT-----NTTAWYNLGLLYKTYAG 687 (713)
Q Consensus 645 ~~~~~g~~~l~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~ 687 (713)
++...|+++ +|+..|+++++++|+ +..++..+..+......
T Consensus 86 ~~~~~~~~~--~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 131 (137)
T 3q49_B 86 CQLEMESYD--EAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN 131 (137)
T ss_dssp HHHHTTCHH--HHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHH--HHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999987 999999999998887 67777777776655443
No 159
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.41 E-value=2.4e-12 Score=112.11 Aligned_cols=120 Identities=17% Similarity=0.190 Sum_probs=97.2
Q ss_pred CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHH
Q 035707 510 DQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEV 589 (713)
Q Consensus 510 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 589 (713)
.....+..+|.++...|++++|+..|++++...|.+ ..++..+|.++...|++++|+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~----------------------~~~~~~la~~~~~~~~~~~A~~ 71 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD----------------------AKLYSNRAACYTKLLEFQLALK 71 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC----------------------HHHHHHHHHHHTTTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc----------------------HHHHHHHHHHHHHhccHHHHHH
Confidence 566778888888888888888888888887775543 7778888888888888888888
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 035707 590 CLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGG 651 (713)
Q Consensus 590 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 651 (713)
++++++..+|.++.+++.+|.++...|++++|+..|++++..+|++..++..++.++...|+
T Consensus 72 ~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 72 DCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888888888888888888888888888877664
No 160
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.40 E-value=1.2e-12 Score=119.00 Aligned_cols=121 Identities=12% Similarity=0.014 Sum_probs=110.9
Q ss_pred ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------------------CCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 035707 565 SLEMETWHDLANVYTSLSQWRDAEVCLSKSKAI------------------NPYSASGWHSTGLLYEAKGLQQEALVSFR 626 (713)
Q Consensus 565 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~ 626 (713)
...+..+..+|..++..|+|++|+..|++++.+ +|.+..+++++|.++...|++++|+..++
T Consensus 8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 345888999999999999999999999999998 66677899999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhCC
Q 035707 627 KALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNT-TAWYNLGLLYKTYAG 687 (713)
Q Consensus 627 ~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~ 687 (713)
+++.++|+++.+++.+|.++...|+++ +|+..|+++++++|+++ .+...++.+....++
T Consensus 88 ~al~~~p~~~~a~~~~g~~~~~~g~~~--~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 88 EVLKREETNEKALFRRAKARIAAWKLD--EAEEDLKLLLRNHPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCcchHHHHHHHHHHHHHhcHH--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999997 99999999999999998 667788877766554
No 161
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.39 E-value=2.9e-12 Score=112.57 Aligned_cols=109 Identities=17% Similarity=0.095 Sum_probs=102.8
Q ss_pred hcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHH
Q 035707 596 AINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAW 675 (713)
Q Consensus 596 ~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~ 675 (713)
..+|.++..++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|+++ +|+..++++++++|+++.+|
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~ 80 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPE--QALADCRRALELDGQSVKAH 80 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHCTTCHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHhCchhHHHH
Confidence 3467789999999999999999999999999999999999999999999999999997 99999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHccccCCC
Q 035707 676 YNLGLLYKTYAGASALEAVECFEAAALLEESAP 708 (713)
Q Consensus 676 ~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~~ 708 (713)
+.+|.++...|+ +++|+.+|++++++.|+++
T Consensus 81 ~~l~~~~~~~~~--~~~A~~~~~~a~~~~p~~~ 111 (137)
T 3q49_B 81 FFLGQCQLEMES--YDEAIANLQRAYSLAKEQR 111 (137)
T ss_dssp HHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhh--HHHHHHHHHHHHHHChhHH
Confidence 999999999999 9999999999999999844
No 162
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.39 E-value=9.5e-13 Score=115.68 Aligned_cols=74 Identities=16% Similarity=-0.018 Sum_probs=54.3
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCCHHHH----HHHHHHHHHhcCCChHHHHHHHHHHHhhCC
Q 035707 601 SASGWHSTGLLYEAKGLQQEALVSFRKALDA-------EPNHVPSL----VSIARVLRQIGGESMATIRCFLTDALRLDR 669 (713)
Q Consensus 601 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-------~p~~~~~~----~~la~~~~~~g~~~l~~A~~~~~~al~~~p 669 (713)
+..+|.++|.++..+|++++|+..|++++++ +|++..+| +++|.++..+|+++ +|+..|+++++++|
T Consensus 56 ~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~e--EAl~~y~kAlel~p 133 (159)
T 2hr2_A 56 DAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGA--EAMPEFKKVVEMIE 133 (159)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHH--HHHHHHHHHHhcCC
Confidence 3447777777777777777777777777777 77777777 77777777777776 77777777777777
Q ss_pred CCHHHHH
Q 035707 670 TNTTAWY 676 (713)
Q Consensus 670 ~~~~~~~ 676 (713)
++..+.-
T Consensus 134 ~d~~~~~ 140 (159)
T 2hr2_A 134 ERKGETP 140 (159)
T ss_dssp HCCSCCT
T ss_pred CcHHHHH
Confidence 6654433
No 163
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.39 E-value=1.4e-13 Score=148.18 Aligned_cols=140 Identities=14% Similarity=0.075 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 035707 567 EMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVL 646 (713)
Q Consensus 567 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~ 646 (713)
.+..+..+|..+...|++++|+.+|+++++++|.++.++..+|.++..+|++++|+..|+++++++|+++.++.++|.+|
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 84 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 36677788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHhCCCCHHHHHHHHH-----------HHHccccCCCCC
Q 035707 647 RQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLL--YKTYAGASALEAVECFE-----------AAALLEESAPVE 710 (713)
Q Consensus 647 ~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~--~~~~g~~~~~~A~~~~~-----------~a~~l~p~~~~~ 710 (713)
..+|+++ +|+..|+++++++|+++.++..++.+ +...|+ +++|++.++ +++.++|+....
T Consensus 85 ~~~g~~~--eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~ 157 (477)
T 1wao_1 85 MALGKFR--AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA--FERAIAGDEHKRSVVDSLDIESMTIEDEYSGP 157 (477)
T ss_dssp HHHTCHH--HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHH--HCCC------CCSTTTCCTTSSCCCCTTCCSC
T ss_pred HHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH--HHHHhccccccchhHhhhhhhhcccccccccc
Confidence 9999997 99999999999999999999999998 889999 999999999 888888776543
No 164
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.39 E-value=2e-12 Score=108.77 Aligned_cols=107 Identities=14% Similarity=0.112 Sum_probs=96.7
Q ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC--CHHHH
Q 035707 598 NPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRT--NTTAW 675 (713)
Q Consensus 598 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~--~~~~~ 675 (713)
+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|+++ +|+.+++++++.+|+ ++.+|
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~--~A~~~~~~a~~~~~~~~~~~~~ 79 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYE--EAVDCYNYVINVIEDEYNKDVW 79 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHTSCCTTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHH--HHHHHHHHHHHhCcccchHHHH
Confidence 57788888999999999999999999999999999999999999999999999987 999999999999999 89999
Q ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHccccCCC
Q 035707 676 YNLGLLYKTY-AGASALEAVECFEAAALLEESAP 708 (713)
Q Consensus 676 ~~lg~~~~~~-g~~~~~~A~~~~~~a~~l~p~~~ 708 (713)
+.+|.++... |+ +++|+.+|++++...|+++
T Consensus 80 ~~l~~~~~~~~~~--~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 80 AAKADALRYIEGK--EVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHHHTTCSSC--SHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHHHhCC--HHHHHHHHHHHhhcccCCC
Confidence 9999999999 99 9999999999999988775
No 165
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.37 E-value=2.1e-11 Score=104.57 Aligned_cols=118 Identities=25% Similarity=0.397 Sum_probs=97.8
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHH
Q 035707 511 QGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVC 590 (713)
Q Consensus 511 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 590 (713)
....+..+|.++...|++++|+..|++++...|.+ ..++..+|.++...|++++|+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----------------------~~~~~~la~~~~~~~~~~~A~~~ 65 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----------------------AEAWYNLGNAYYKQGDYDEAIEY 65 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------------------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc----------------------HHHHHHHHHHHHHhCCHHHHHHH
Confidence 36677888888888888888888888888875543 67788888888888888888888
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 035707 591 LSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIG 650 (713)
Q Consensus 591 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g 650 (713)
+++++...|.++.++..+|.++...|++++|+..|++++..+|+++.++..++.++...|
T Consensus 66 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 66 YQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888888888888888888888888888888888888888888888888888888877654
No 166
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=7.3e-12 Score=111.37 Aligned_cols=120 Identities=13% Similarity=0.061 Sum_probs=112.3
Q ss_pred CCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 035707 563 DRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYS---ASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSL 639 (713)
Q Consensus 563 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 639 (713)
..+.....+..+|..+...|++++|+.+|++++...|++ ..++..+|.++...|++++|+..|++++..+|+++.++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 346678999999999999999999999999999999987 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 035707 640 VSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKT 684 (713)
Q Consensus 640 ~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 684 (713)
..+|.++...|+++ +|+.+|+++++++|+++.++..++.+...
T Consensus 103 ~~~a~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 103 YRRSQALEKLGRLD--QAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHTCHH--HHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHcCCHH--HHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 99999999999997 99999999999999999999988887543
No 167
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.37 E-value=4.9e-13 Score=137.37 Aligned_cols=139 Identities=11% Similarity=-0.019 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh-----------------hHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 035707 567 EMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSA-----------------SGWHSTGLLYEAKGLQQEALVSFRKAL 629 (713)
Q Consensus 567 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~lg~~~~~~g~~~eA~~~~~~al 629 (713)
....+..+|..+...|++++|+.+|++++...|.+. .+++++|.++...|++++|+..|++++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 377899999999999999999999999999999876 489999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHccccCCC
Q 035707 630 DAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLY-KTYAGASALEAVECFEAAALLEESAP 708 (713)
Q Consensus 630 ~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~~~~~~A~~~~~~a~~l~p~~~ 708 (713)
.++|+++.+++++|.+|...|+++ +|+..|+++++++|+++.++..++.+. ...+. .+++...|.+++...|+++
T Consensus 258 ~~~p~~~~a~~~lg~a~~~~g~~~--~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~--~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 258 TEEEKNPKALFRRGKAKAELGQMD--SARDDFRKAQKYAPDDKAIRRELRALAEQEKAL--YQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHH--HHHHHHHHTTC-------------------------------------------
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhCCCCCCC
Confidence 999999999999999999999997 999999999999999999999999984 45667 8899999999999999887
Q ss_pred C
Q 035707 709 V 709 (713)
Q Consensus 709 ~ 709 (713)
.
T Consensus 334 ~ 334 (338)
T 2if4_A 334 A 334 (338)
T ss_dssp -
T ss_pred C
Confidence 5
No 168
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.36 E-value=2.2e-11 Score=114.89 Aligned_cols=164 Identities=12% Similarity=0.017 Sum_probs=119.8
Q ss_pred HHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh------cCCchHHHHHHHHHHHHcC
Q 035707 417 KRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLE------ARSNVKGYLLLARVLSAQK 490 (713)
Q Consensus 417 ~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~~la~~~~~~g 490 (713)
...|++++|...++... ...+....++..+|.++...|++++|+.++++++... |... .++..+|.++...|
T Consensus 3 ~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALL-AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEH-RALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHH-TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHH-HHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHH-HHHHHHHHHHHHcC
Confidence 35678888888665555 4333567888889999999999999999999988843 3333 67888888999999
Q ss_pred CHHHHHHHHHHHhhc---cC-CC-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCc
Q 035707 491 QFADAESVINDSLDQ---TG-KW-DQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRS 565 (713)
Q Consensus 491 ~~~~A~~~~~~al~~---~p-~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (713)
++++|+..++++++. .+ .+ ....++..+|.++...|++++|+..+++++...+.. ....
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----------------~~~~ 144 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA----------------DDQV 144 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT----------------TCHH
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc----------------cchH
Confidence 999999999888877 23 11 234567888888888899999999988888875432 1122
Q ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Q 035707 566 LEMETWHDLANVYTSLSQWRDAEVCLSKSKAIN 598 (713)
Q Consensus 566 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 598 (713)
....++..+|.++...|++++|+.++++++.+.
T Consensus 145 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 145 AIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 335567788888888888888888888887654
No 169
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.35 E-value=1.6e-11 Score=111.52 Aligned_cols=137 Identities=16% Similarity=0.106 Sum_probs=106.7
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHH
Q 035707 511 QGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVC 590 (713)
Q Consensus 511 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 590 (713)
....+...|..+...|++++|+..|++++...+.......... .......|....+|.++|.+|...|++++|+..
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~ 85 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGE----PEWVELDRKNIPLYANMSQCYLNIGDLHEAEET 85 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTS----HHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCH----HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 4556778888888888888888888888887433210000000 000000245588999999999999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHhcC
Q 035707 591 LSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHV-PSLVSIARVLRQIGG 651 (713)
Q Consensus 591 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~-~~~~~la~~~~~~g~ 651 (713)
+++++.++|.++.+++.+|.++...|++++|+..|++++.++|++. .+...++.+....++
T Consensus 86 ~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 86 SSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 667777777665543
No 170
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.35 E-value=2.3e-11 Score=103.19 Aligned_cols=114 Identities=15% Similarity=0.204 Sum_probs=91.4
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHH
Q 035707 511 QGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVC 590 (713)
Q Consensus 511 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 590 (713)
....+..+|..+...|++++|+..|++++...|.+ +.++..+|.++...|++++|+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----------------------~~~~~~~a~~~~~~~~~~~A~~~ 60 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN----------------------HVLYSNRSAAYAKKGDYQKAYED 60 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------------------HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc----------------------HHHHHHHHHHHHhhccHHHHHHH
Confidence 45667778888888888888888888888776543 67788888888888888888888
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 035707 591 LSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVL 646 (713)
Q Consensus 591 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~ 646 (713)
+++++...|.++.++..+|.++...|++++|+..|+++++.+|+++.++..++.+.
T Consensus 61 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 61 GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 88888888888888888888888888888888888888888888888877777654
No 171
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.35 E-value=1.5e-11 Score=116.06 Aligned_cols=166 Identities=17% Similarity=0.119 Sum_probs=129.7
Q ss_pred HHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCC----CCcHHHHHHHHHHHHHhC
Q 035707 451 NAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGK----WDQGELLRTKAKLQIAQG 526 (713)
Q Consensus 451 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~la~~~~~~g 526 (713)
.+..|++++|.+.++.+.. +|.....++..+|.++...|++++|+..+++++..... +....++..+|.++...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 3568999999996665544 45333389999999999999999999999999984311 145678999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--C---
Q 035707 527 RLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPY--S--- 601 (713)
Q Consensus 527 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~--- 601 (713)
++++|+..+++++...+.. .........++..+|.++...|++++|+.++++++.+.+. +
T Consensus 81 ~~~~A~~~~~~al~~~~~~---------------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 145 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASL---------------PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVA 145 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHS---------------CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHHHHHc---------------CccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHH
Confidence 9999999999999985532 0011245778999999999999999999999999876432 2
Q ss_pred -hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 035707 602 -ASGWHSTGLLYEAKGLQQEALVSFRKALDAE 632 (713)
Q Consensus 602 -~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 632 (713)
..++..+|.++...|++++|+..+++++++.
T Consensus 146 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 146 IACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 2346889999999999999999999998764
No 172
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.34 E-value=1.2e-12 Score=140.32 Aligned_cols=160 Identities=9% Similarity=-0.040 Sum_probs=82.3
Q ss_pred HHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHH
Q 035707 418 RILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAES 497 (713)
Q Consensus 418 ~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~ 497 (713)
..+++++|+..|+.++ ...|.....+..+|..++..|+|++|+..|++++...|.+. ... .+..
T Consensus 246 ~l~~~~~A~~~~~~~~-~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~-~~~------------~~~~-- 309 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDT-KEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEY-GLS------------EKES-- 309 (457)
T ss_dssp EEEEEECCCCGGGSCH-HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCC-SCC------------HHHH--
T ss_pred hhhhcccCcchhhcCH-HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc-cCC------------hHHH--
Confidence 3456667777777776 66677777777777777777777777777777777777654 200 0000
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHH
Q 035707 498 VINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANV 577 (713)
Q Consensus 498 ~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 577 (713)
.+..+ ....++.++|.++..+|++++|+..|++++.++|++ ..+|+.+|.+
T Consensus 310 -----~~~~~--~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~a~~~~g~a 360 (457)
T 1kt0_A 310 -----KASES--FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN----------------------EKGLYRRGEA 360 (457)
T ss_dssp -----HHHHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----------------------HHHHHHHHHH
T ss_pred -----HHHHH--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc----------------------HHHHHHHHHH
Confidence 00111 123344444444444444444444444444444332 4444444444
Q ss_pred HHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHH
Q 035707 578 YTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEAL 622 (713)
Q Consensus 578 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~ 622 (713)
|..+|++++|+..|+++++++|++..++..++.++...+++++|.
T Consensus 361 ~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 361 QLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555554444444444444444444444444443
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.33 E-value=1.7e-11 Score=106.32 Aligned_cols=117 Identities=17% Similarity=0.075 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh---hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHH
Q 035707 569 ETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSA---SGWHSTGLLYEAKGLQQEALVSFRKALDAEPNH---VPSLVSI 642 (713)
Q Consensus 569 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~l 642 (713)
..++.+|.++...|++++|+..|++++...|+++ .+++.+|.++...|++++|+..|++++..+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3567899999999999999999999999999888 799999999999999999999999999999999 8889999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q 035707 643 ARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAG 687 (713)
Q Consensus 643 a~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 687 (713)
|.++...|+++ +|+..|+++++..|+++.+...+..+..-.++
T Consensus 83 a~~~~~~g~~~--~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~ 125 (129)
T 2xev_A 83 GLSQYGEGKNT--EAQQTLQQVATQYPGSDAARVAQERLQSIRLG 125 (129)
T ss_dssp HHHHHHTTCHH--HHHHHHHHHHHHSTTSHHHHHHHHHHHHHC--
T ss_pred HHHHHHcCCHH--HHHHHHHHHHHHCCCChHHHHHHHHHHHHHhh
Confidence 99999999997 99999999999999998887766665554443
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.32 E-value=1.2e-11 Score=107.08 Aligned_cols=118 Identities=14% Similarity=0.079 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HHHH
Q 035707 567 EMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNH-------VPSL 639 (713)
Q Consensus 567 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-------~~~~ 639 (713)
.+..+..+|.++...|++++|+.+|++++...|.++.++..+|.++...|++++|+..|++++...|++ +.++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 478899999999999999999999999999999999999999999999999999999999999998877 8899
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q 035707 640 VSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAG 687 (713)
Q Consensus 640 ~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 687 (713)
..+|.++...|+++ +|+.+|+++++..| ++..+..++.+....++
T Consensus 83 ~~la~~~~~~~~~~--~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 83 ARIGNSYFKEEKYK--DAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHTTCHH--HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHH--HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 99999999999997 99999999999998 68888888888776554
No 175
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.32 E-value=3.1e-12 Score=112.16 Aligned_cols=90 Identities=17% Similarity=0.171 Sum_probs=59.3
Q ss_pred HCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 035707 580 SLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQ----------QEALVSFRKALDAEPNHVPSLVSIARVLRQI 649 (713)
Q Consensus 580 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 649 (713)
+.+++++|+..++++++++|.++.+|+++|.++...+++ ++|+..|+++++++|++..+|+++|.+|..+
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 445667777777777777777777777777777766654 3666666666666666666666666666665
Q ss_pred c-----------CCChHHHHHHHHHHHhhCCCC
Q 035707 650 G-----------GESMATIRCFLTDALRLDRTN 671 (713)
Q Consensus 650 g-----------~~~l~~A~~~~~~al~~~p~~ 671 (713)
| +++ +|+.+|++|++++|++
T Consensus 94 g~l~P~~~~a~g~~~--eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 94 AFLTPDETEAKHNFD--LATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHCCCHHHHHHHHH--HHHHHHHHHHHHCTTC
T ss_pred cccCcchhhhhccHH--HHHHHHHHHHHhCCCC
Confidence 4 443 6666666666666654
No 176
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.30 E-value=1.7e-08 Score=108.73 Aligned_cols=343 Identities=8% Similarity=-0.120 Sum_probs=227.7
Q ss_pred CcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhh--ccCcch
Q 035707 316 GELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICAENKVCIEEGITYARKALSMLQ--GKCRQM 393 (713)
Q Consensus 316 g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~--~~~~~~ 393 (713)
|+++.+...|++++...+ ++..|..........+...+.....|+.++.... +.+.
T Consensus 28 ~~~e~~~~iferal~~~p--------------------s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~-- 85 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSY--------------------NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSY-- 85 (493)
T ss_dssp TCHHHHHHHHHHHSTTCC--------------------CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCH--
T ss_pred CCHHHHHHHHHHHhccCC--------------------CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccH--
Confidence 889999999999998542 3344444444444444322256778888887432 3333
Q ss_pred HHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH--------------HcCCHHH
Q 035707 394 ASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENA--------------EQRKLDV 459 (713)
Q Consensus 394 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~--------------~~g~~~~ 459 (713)
..|......+... . ...++.+.+..+|++++ ...+.+..-++..-..+. ..+.+..
T Consensus 86 --~iW~~Yi~f~~~~--~-----~~~~~~~~vR~iy~rAL-~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ 155 (493)
T 2uy1_A 86 --GLYKEYIEEEGKI--E-----DEQTRIEKIRNGYMRAL-QTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQS 155 (493)
T ss_dssp --HHHHHHHHHTSSC--S-----SHHHHHHHHHHHHHHHH-TSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhc--h-----hhhHHHHHHHHHHHHHH-hChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHH
Confidence 5555444443110 0 13577889999999999 864444333322111111 1223444
Q ss_pred HHHHHHHHHhhhcCCchHHHHHHHHHHHHc--CC-----HHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHH
Q 035707 460 ALYYAKKLLNLEARSNVKGYLLLARVLSAQ--KQ-----FADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAI 532 (713)
Q Consensus 460 A~~~~~~~l~~~p~~~~~~~~~la~~~~~~--g~-----~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~ 532 (713)
|...++.+....+......|......-... +- ......+|++++...| ....+|...+..+...|+.++|.
T Consensus 156 ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p--~~~~lW~~ya~~~~~~~~~~~ar 233 (493)
T 2uy1_A 156 SFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFY--YAEEVYFFYSEYLIGIGQKEKAK 233 (493)
T ss_dssp HHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHcCCHHHHH
Confidence 555555555544442214665544443221 11 3456778888888887 56888888888888888999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhh----------hhcc-c-------CCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 035707 533 ETYVNLLAVLQFRKKSFSAGKNLV----------KNRQ-N-------HDRSLEMETWHDLANVYTSLSQWRDAEVCLSKS 594 (713)
Q Consensus 533 ~~~~~~l~~~~~~~~~~~~~~~~~----------~~~~-~-------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 594 (713)
..|++++.. |.+...+....... .... . ........+|...+....+.++.+.|...|+++
T Consensus 234 ~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A 312 (493)
T 2uy1_A 234 KVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL 312 (493)
T ss_dssp HHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 999999888 76654332211110 0000 0 011223567888888888889999999999999
Q ss_pred HhcCCCChhHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHH
Q 035707 595 KAINPYSASGWHSTGLLYEAKG-LQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTT 673 (713)
Q Consensus 595 l~~~p~~~~~~~~lg~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~ 673 (713)
...+....+|...+.+....+ +.+.|...|+.+++..|+.+..|...+......|+.+ .|+..|+++ +....
T Consensus 313 -~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~--~aR~l~er~----~k~~~ 385 (493)
T 2uy1_A 313 -GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEE--NARALFKRL----EKTSR 385 (493)
T ss_dssp -TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH--HHHHHHHHS----CCBHH
T ss_pred -hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHH----HHHHH
Confidence 433335667777777766655 6999999999999999999988888888888899886 999999987 34678
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHc
Q 035707 674 AWYNLGLLYKTYAGASALEAVECFEAAAL 702 (713)
Q Consensus 674 ~~~~lg~~~~~~g~~~~~~A~~~~~~a~~ 702 (713)
.|......-...|+ .+.+...+++++.
T Consensus 386 lw~~~~~fE~~~G~--~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 386 MWDSMIEYEFMVGS--MELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHSC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC--HHHHHHHHHHHHH
Confidence 88888888888999 9999999999986
No 177
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.29 E-value=1.9e-10 Score=122.65 Aligned_cols=198 Identities=12% Similarity=0.047 Sum_probs=165.9
Q ss_pred HHHhcHHHHHHHHHHHHHhhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCch---
Q 035707 417 KRILKQSQALVALETAEKTMRERDP-----------------YIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNV--- 476 (713)
Q Consensus 417 ~~~~~~~~A~~~~~~al~~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--- 476 (713)
...|++++|++.|.+++ ...|... .++..+|.+|...|++++|++++.+++...+....
T Consensus 15 ~~~~~y~eA~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 93 (434)
T 4b4t_Q 15 VNEKQYNEAEQVYLSLL-DKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKT 93 (434)
T ss_dssp HHHTCHHHHHHHHHHHH-HSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHH
T ss_pred HHCCCHHHHHHHHHHHH-hhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHH
Confidence 67899999999999999 8877642 35889999999999999999999999987766440
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHhhcc----CCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhh
Q 035707 477 --KGYLLLARVLSAQKQFADAESVINDSLDQT----GKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFS 550 (713)
Q Consensus 477 --~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 550 (713)
.+...++.++...|++++|+.++++++... .......++..+|.++...|++++|+..+++++.....
T Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~------ 167 (434)
T 4b4t_Q 94 VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKK------ 167 (434)
T ss_dssp HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHh------
Confidence 245567888888999999999999998763 22244678899999999999999999999999887553
Q ss_pred hhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---C----hhHHHHHHHHHHHcCCHHHHHH
Q 035707 551 AGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPY---S----ASGWHSTGLLYEAKGLQQEALV 623 (713)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~----~~~~~~lg~~~~~~g~~~eA~~ 623 (713)
..+.+....++..++.+|...|++++|..++++++.+.+. . ...+..+|.++...|++++|..
T Consensus 168 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~ 237 (434)
T 4b4t_Q 168 ----------LDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFS 237 (434)
T ss_dssp ----------SSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred ----------cccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3445677899999999999999999999999999876432 2 3467788999999999999999
Q ss_pred HHHHHHhc
Q 035707 624 SFRKALDA 631 (713)
Q Consensus 624 ~~~~al~~ 631 (713)
.|.+++..
T Consensus 238 ~~~~a~~~ 245 (434)
T 4b4t_Q 238 YFFESFES 245 (434)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999864
No 178
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.29 E-value=2.9e-11 Score=125.43 Aligned_cols=125 Identities=15% Similarity=0.105 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh----------------cCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 035707 568 METWHDLANVYTSLSQWRDAEVCLSKSKA----------------INPYSASGWHSTGLLYEAKGLQQEALVSFRKALDA 631 (713)
Q Consensus 568 ~~~~~~la~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 631 (713)
...+..+|..+...|++++|+..|+++++ .+|.+..++.++|.++...|++++|+.+|++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 67789999999999999999999999998 77778899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 035707 632 EPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVEC 696 (713)
Q Consensus 632 ~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~ 696 (713)
+|+++.+++.+|.+|...|+++ +|+..|+++++++|++..++..++.++...++ .+++...
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~--eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~--~~~a~k~ 363 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYD--QALADLKKAQEIAPEDKAIQAELLKVKQKIKA--QKDKEKA 363 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH--HHHHHHC
T ss_pred CchhHHHHHHHHHHHHHccCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 9999999999999999999997 99999999999999999999999999999999 8887653
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.28 E-value=1.1e-10 Score=101.02 Aligned_cols=119 Identities=17% Similarity=0.155 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 035707 514 LLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSK 593 (713)
Q Consensus 514 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 593 (713)
.++.+|..+...|++++|+..|++++...|++ +....+++.+|.++...|++++|+..|++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-------------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 64 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNG-------------------VYTPNALYWLGESYYATRNFQLAEAQFRD 64 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSS-------------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC-------------------cccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 46788999999999999999999999987754 34458999999999999999999999999
Q ss_pred HHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 035707 594 SKAINPYS---ASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGG 651 (713)
Q Consensus 594 al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 651 (713)
++..+|++ +.+++.+|.++...|++++|+..|++++...|++..+......+-...++
T Consensus 65 ~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~ 125 (129)
T 2xev_A 65 LVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRLG 125 (129)
T ss_dssp HHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC--
T ss_pred HHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhh
Confidence 99999999 88899999999999999999999999999999998877766655544443
No 180
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.28 E-value=1.3e-11 Score=103.56 Aligned_cols=106 Identities=13% Similarity=0.102 Sum_probs=100.7
Q ss_pred ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHH
Q 035707 565 SLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPN--HVPSLVSI 642 (713)
Q Consensus 565 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~~l 642 (713)
|.+..++..+|.++...|++++|+.+|+++++..|.+..++..+|.++...|++++|+..|+++++.+|+ +..++..+
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 4457788999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHh-cCCChHHHHHHHHHHHhhCCCCH
Q 035707 643 ARVLRQI-GGESMATIRCFLTDALRLDRTNT 672 (713)
Q Consensus 643 a~~~~~~-g~~~l~~A~~~~~~al~~~p~~~ 672 (713)
|.++... |+++ +|+.++++++...|+++
T Consensus 83 ~~~~~~~~~~~~--~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 83 ADALRYIEGKEV--EAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHTTCSSCSH--HHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHhCCHH--HHHHHHHHHhhcccCCC
Confidence 9999999 9997 99999999999998764
No 181
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.27 E-value=6.6e-11 Score=126.34 Aligned_cols=209 Identities=11% Similarity=0.015 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCc----------------hHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 035707 441 PYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSN----------------VKGYLLLARVLSAQKQFADAESVINDSLD 504 (713)
Q Consensus 441 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----------------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 504 (713)
|.+....|..+...|+|++|++.|.++++..|... ..++..+|.+|..+|++++|...+.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45667788889999999999999999999877643 12578999999999999999999999988
Q ss_pred ccCCCCcH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHH
Q 035707 505 QTGKWDQG----ELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTS 580 (713)
Q Consensus 505 ~~p~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 580 (713)
..+..... .+...++.++...|++++|+..+++++...+.. ...+....++..+|.+|..
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------------~~~~~~~~~~~~la~~~~~ 147 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE----------------KRVFLKHSLSIKLATLHYQ 147 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS----------------SCCSSHHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh----------------CccHHHHHHHHHHHHHHHH
Confidence 76432222 355677888888999999999999999987642 3345568899999999999
Q ss_pred CCCHHHHHHHHHHHHhcC------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CC----HHHHHHHHHHHH
Q 035707 581 LSQWRDAEVCLSKSKAIN------PYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEP---NH----VPSLVSIARVLR 647 (713)
Q Consensus 581 ~g~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p---~~----~~~~~~la~~~~ 647 (713)
.|++++|..++++++... +....++..+|.+|...|++++|...|++++...+ +. ...+..+|.++.
T Consensus 148 ~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~ 227 (434)
T 4b4t_Q 148 KKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHC 227 (434)
T ss_dssp HTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT
T ss_pred ccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Confidence 999999999999987652 33467899999999999999999999999987642 22 245667788888
Q ss_pred HhcCCChHHHHHHHHHHHhh
Q 035707 648 QIGGESMATIRCFLTDALRL 667 (713)
Q Consensus 648 ~~g~~~l~~A~~~~~~al~~ 667 (713)
..|+++ +|..+|.++++.
T Consensus 228 ~~~~y~--~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 228 EDKDYK--TAFSYFFESFES 245 (434)
T ss_dssp SSSCHH--HHHHHHHHHHHH
T ss_pred HHHhHH--HHHHHHHHHHHH
Confidence 888887 999999988864
No 182
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=3.1e-11 Score=107.23 Aligned_cols=110 Identities=15% Similarity=0.065 Sum_probs=103.8
Q ss_pred hcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCH
Q 035707 596 AINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNH---VPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNT 672 (713)
Q Consensus 596 ~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~ 672 (713)
...|.+...++.+|..+...|++++|+..|+++++.+|++ ..++..+|.++...|+++ +|+..++++++.+|+++
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~A~~~~~~~~~~~~~~~ 99 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYD--KAETEASKAIEKDGGDV 99 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHTSCCH
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHH--HHHHHHHHHHhhCccCH
Confidence 3457788999999999999999999999999999999998 899999999999999997 99999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCCCC
Q 035707 673 TAWYNLGLLYKTYAGASALEAVECFEAAALLEESAPV 709 (713)
Q Consensus 673 ~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~~~ 709 (713)
.+|+.+|.++...|+ +++|+.+|+++++++|+++.
T Consensus 100 ~~~~~~a~~~~~~~~--~~~A~~~~~~al~~~p~~~~ 134 (148)
T 2dba_A 100 KALYRRSQALEKLGR--LDQAVLDLQRCVSLEPKNKV 134 (148)
T ss_dssp HHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCcHH
Confidence 999999999999999 99999999999999998753
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.27 E-value=9.4e-13 Score=141.84 Aligned_cols=134 Identities=11% Similarity=0.088 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 035707 514 LLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSK 593 (713)
Q Consensus 514 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 593 (713)
.+..+|..+...|++++|++.|+++++.+|.+ ..+|..+|.+|..+|++++|+..+++
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~----------------------~~~~~~lg~~~~~~g~~~~A~~~~~~ 65 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSN----------------------AIYYGNRSLAYLRTECYGYALGDATR 65 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC----------------------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc----------------------HHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 44556667777888888888888888886644 78888888888888888888888888
Q ss_pred HHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHHhcCCChHHHHHHHH---------
Q 035707 594 SKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARV--LRQIGGESMATIRCFLT--------- 662 (713)
Q Consensus 594 al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~l~~A~~~~~--------- 662 (713)
+++++|.++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.+ +...|+++ +|+..++
T Consensus 66 al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~--~A~~~~~~~~~~~~~~ 143 (477)
T 1wao_1 66 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFE--RAIAGDEHKRSVVDSL 143 (477)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHC--CC------CCSTTTCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH--HHhccccccchhHhhh
Confidence 8888888888888888888888888888888888888888888888888877 77778887 8888888
Q ss_pred --HHHhhCCCC
Q 035707 663 --DALRLDRTN 671 (713)
Q Consensus 663 --~al~~~p~~ 671 (713)
+++.++|+.
T Consensus 144 ~~~al~~~~~~ 154 (477)
T 1wao_1 144 DIESMTIEDEY 154 (477)
T ss_dssp TTSSCCCCTTC
T ss_pred hhhhccccccc
Confidence 676666553
No 184
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.26 E-value=8.1e-12 Score=128.26 Aligned_cols=160 Identities=11% Similarity=0.041 Sum_probs=96.5
Q ss_pred hhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhh
Q 035707 470 LEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSF 549 (713)
Q Consensus 470 ~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 549 (713)
..+... ..+..+|..+...|++++|+..|++++...| .+.. +...+++.++...+
T Consensus 174 ~~~~~a-~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p--~~~~--------~~~~~~~~~~~~~l-------------- 228 (338)
T 2if4_A 174 ERIGAA-DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMG--DDFM--------FQLYGKYQDMALAV-------------- 228 (338)
T ss_dssp HHHHHH-HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSC--HHHH--------HTCCHHHHHHHHHH--------------
T ss_pred HHHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc--cchh--------hhhcccHHHHHHHH--------------
Confidence 345555 7888889999999999999999999988877 3321 12233333332211
Q ss_pred hhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 035707 550 SAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKAL 629 (713)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 629 (713)
...+|+++|.+|..+|++++|+.+|+++++++|.++.+|+.+|.+|...|++++|+..|++++
T Consensus 229 -----------------~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al 291 (338)
T 2if4_A 229 -----------------KNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQ 291 (338)
T ss_dssp -----------------HTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred -----------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 135889999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHhhCCCCHH
Q 035707 630 DAEPNHVPSLVSIARVLRQI-GGESMATIRCFLTDALRLDRTNTT 673 (713)
Q Consensus 630 ~~~p~~~~~~~~la~~~~~~-g~~~l~~A~~~~~~al~~~p~~~~ 673 (713)
+++|++..++..++.+.... +..+ ++...|.+++...|+++.
T Consensus 292 ~l~p~~~~a~~~L~~l~~~~~~~~~--~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 292 KYAPDDKAIRRELRALAEQEKALYQ--KQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp C--------------------------------------------
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhCCCCCCCC
Confidence 99999999999999985544 4444 899999999999988753
No 185
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.26 E-value=1e-11 Score=108.79 Aligned_cols=94 Identities=16% Similarity=0.165 Sum_probs=87.3
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCC--------hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 035707 613 EAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGES--------MATIRCFLTDALRLDRTNTTAWYNLGLLYKT 684 (713)
Q Consensus 613 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--------l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 684 (713)
.+.+.+++|++.|+++++++|+++++|+++|.++...++++ +++|+..|+++++++|+++.+|+++|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999998764 4599999999999999999999999999998
Q ss_pred hC-----------CCCHHHHHHHHHHHHccccCCC
Q 035707 685 YA-----------GASALEAVECFEAAALLEESAP 708 (713)
Q Consensus 685 ~g-----------~~~~~~A~~~~~~a~~l~p~~~ 708 (713)
+| + +++|+.+|++|++++|+++
T Consensus 93 lg~l~P~~~~a~g~--~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 93 FAFLTPDETEAKHN--FDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHCCCHHHHHHH--HHHHHHHHHHHHHHCTTCH
T ss_pred hcccCcchhhhhcc--HHHHHHHHHHHHHhCCCCH
Confidence 85 9 9999999999999999875
No 186
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.26 E-value=2e-11 Score=110.19 Aligned_cols=139 Identities=16% Similarity=0.152 Sum_probs=119.7
Q ss_pred ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh------hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---
Q 035707 565 SLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSA------SGWHSTGLLYEAKGLQQEALVSFRKALDAEPNH--- 635 (713)
Q Consensus 565 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~--- 635 (713)
+....++..+|.++...|++++|+.++++++.+.+... .++..+|.++...|++++|+..+++++.+.+..
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 85 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 85 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence 34478899999999999999999999999998765432 478999999999999999999999999875432
Q ss_pred ---HHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccC
Q 035707 636 ---VPSLVSIARVLRQIGGESMATIRCFLTDALRLDRT------NTTAWYNLGLLYKTYAGASALEAVECFEAAALLEES 706 (713)
Q Consensus 636 ---~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~ 706 (713)
..++..+|.++...|+++ +|+.+++++++..+. ...++..+|.++...|+ +++|..+|++++++...
T Consensus 86 ~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 86 AVEAQSCYSLGNTYTLLQDYE--KAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN--HDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHH
Confidence 567889999999999997 999999999976422 24678899999999999 99999999999987654
Q ss_pred C
Q 035707 707 A 707 (713)
Q Consensus 707 ~ 707 (713)
.
T Consensus 162 ~ 162 (164)
T 3ro3_A 162 V 162 (164)
T ss_dssp C
T ss_pred h
Confidence 3
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.25 E-value=7.1e-12 Score=106.77 Aligned_cols=103 Identities=17% Similarity=0.058 Sum_probs=87.3
Q ss_pred HCCCHHHHHHHHHHHHhc---CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHH
Q 035707 580 SLSQWRDAEVCLSKSKAI---NPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMAT 656 (713)
Q Consensus 580 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~ 656 (713)
..|++++|+.+|++++++ +|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+++ +
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~--~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYE--Q 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH--H
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHH--H
Confidence 468899999999999999 58888999999999999999999999999999999999999999999999999997 9
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 035707 657 IRCFLTDALRLDRTNTTAWYNLGLLYKT 684 (713)
Q Consensus 657 A~~~~~~al~~~p~~~~~~~~lg~~~~~ 684 (713)
|+..++++++..|+++........+...
T Consensus 80 A~~~~~~al~~~p~~~~~~~~~~ai~~~ 107 (117)
T 3k9i_A 80 GVELLLKIIAETSDDETIQSYKQAILFY 107 (117)
T ss_dssp HHHHHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 9999999999999998776544444333
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.24 E-value=3e-11 Score=102.85 Aligned_cols=106 Identities=14% Similarity=0.115 Sum_probs=89.9
Q ss_pred HhCCHHHHHHHHHHHHHH---HhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Q 035707 524 AQGRLKNAIETYVNLLAV---LQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPY 600 (713)
Q Consensus 524 ~~g~~~~A~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 600 (713)
..|++++|+..|+++++. +|. ...++..+|.+|...|++++|+.+|+++++.+|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~----------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 59 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKD----------------------LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN 59 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHH----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCCcHHHHHHHHHHHHHcCCCCcc----------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 468899999999999988 454 4899999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 035707 601 SASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGG 651 (713)
Q Consensus 601 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 651 (713)
++.+++.+|.++...|++++|+..|++++...|+++........+....+.
T Consensus 60 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~~~~ 110 (117)
T 3k9i_A 60 HQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYADK 110 (117)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998876555444444433
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.22 E-value=1.5e-10 Score=120.01 Aligned_cols=89 Identities=13% Similarity=0.228 Sum_probs=85.1
Q ss_pred ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 035707 565 SLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIAR 644 (713)
Q Consensus 565 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~ 644 (713)
+....+|.++|.+|..+|++++|+.+++++++++|.++.+++.+|.+|...|++++|+..|+++++++|++..++..++.
T Consensus 270 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~ 349 (370)
T 1ihg_A 270 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCC
Q 035707 645 VLRQIGGES 653 (713)
Q Consensus 645 ~~~~~g~~~ 653 (713)
++...++.+
T Consensus 350 ~~~~~~~~~ 358 (370)
T 1ihg_A 350 VKQKIKAQK 358 (370)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988875
No 190
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.22 E-value=1.7e-10 Score=103.90 Aligned_cols=140 Identities=17% Similarity=0.081 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCc-----hHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCC----cH
Q 035707 442 YIIYHLCLENAEQRKLDVALYYAKKLLNLEARSN-----VKGYLLLARVLSAQKQFADAESVINDSLDQTGKWD----QG 512 (713)
Q Consensus 442 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~ 512 (713)
.++..+|.++...|++++|+.++++++...+... ..++..+|.++...|++++|+..++++++..+... ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 4566777777777777777777777776654322 02566666666677777777777766666532111 13
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 035707 513 ELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLS 592 (713)
Q Consensus 513 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 592 (713)
.++..+|.++...|++++|+..+++++...+.. ...+....++..+|.++...|++++|+.+++
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 153 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL----------------KDRIGEGRACWSLGNAYTALGNHDQAMHFAE 153 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc----------------cchHhHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 455666666666666666666666666654321 1122334555556666666666666666666
Q ss_pred HHHhc
Q 035707 593 KSKAI 597 (713)
Q Consensus 593 ~al~~ 597 (713)
+++++
T Consensus 154 ~a~~~ 158 (164)
T 3ro3_A 154 KHLEI 158 (164)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 191
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.22 E-value=1.2e-10 Score=100.68 Aligned_cols=118 Identities=14% Similarity=0.082 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 035707 477 KGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLV 556 (713)
Q Consensus 477 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 556 (713)
..+..+|.++...|++++|+..|++++...| .+..++..+|.++...|++++|+..+++++...|.+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----------- 71 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDP--TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN----------- 71 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-----------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-----------
Confidence 4555666666666666666666666666655 455556666666666666666666666666655432
Q ss_pred hhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 035707 557 KNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLY 612 (713)
Q Consensus 557 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 612 (713)
....+....++..+|.++...|++++|+.+|++++...| ++..+..++.+.
T Consensus 72 ----~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 72 ----REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred ----chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 011111244555555555555555555555555555555 344444444443
No 192
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.14 E-value=4.2e-08 Score=105.63 Aligned_cols=285 Identities=10% Similarity=-0.073 Sum_probs=192.7
Q ss_pred cCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHh-cHHHHHHHHHHHHHhh---CCCCHHH
Q 035707 368 NKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRIL-KQSQALVALETAEKTM---RERDPYI 443 (713)
Q Consensus 368 ~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~---~p~~~~~ 443 (713)
.++++ .+..+|++++. ..| +. ..|....... .+.+ ..+.....|+.++ .. +|.+...
T Consensus 27 ~~~~e-~~~~iferal~-~~p-s~----~LW~~Y~~f~-----------~~~~~~~~~i~~~fe~al-~~vg~d~~s~~i 87 (493)
T 2uy1_A 27 SKDYR-SLESLFGRCLK-KSY-NL----DLWMLYIEYV-----------RKVSQKKFKLYEVYEFTL-GQFENYWDSYGL 87 (493)
T ss_dssp TTCHH-HHHHHHHHHST-TCC-CH----HHHHHHHHHH-----------HHHC----CTHHHHHHHH-HHSTTCTTCHHH
T ss_pred CCCHH-HHHHHHHHHhc-cCC-CH----HHHHHHHHHH-----------HHhCchHHHHHHHHHHHH-HHcCCCcccHHH
Confidence 37788 99999999998 455 44 5544444333 2222 2345667788888 53 5778888
Q ss_pred HHHHHHHHH----HcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHH-------------HHcCCHHHHHHHHHHHhhcc
Q 035707 444 IYHLCLENA----EQRKLDVALYYAKKLLNLEARSNVKGYLLLARVL-------------SAQKQFADAESVINDSLDQT 506 (713)
Q Consensus 444 ~~~la~~~~----~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~-------------~~~g~~~~A~~~~~~al~~~ 506 (713)
|...+..+. .+++.+.+...|++++...+.+....|......- .....+..|...++.+....
T Consensus 88 W~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~ 167 (493)
T 2uy1_A 88 YKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLI 167 (493)
T ss_dssp HHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 888777654 4577889999999999853322212332222211 12234445566666655543
Q ss_pred CCCCcHHHHHHHHHHHHHh--CC-----HHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHH
Q 035707 507 GKWDQGELLRTKAKLQIAQ--GR-----LKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYT 579 (713)
Q Consensus 507 p~~~~~~~~~~la~~~~~~--g~-----~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 579 (713)
+. .+...|.......... |- .+.....|++++...|.. +.+|...+..+.
T Consensus 168 ~~-~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~----------------------~~lW~~ya~~~~ 224 (493)
T 2uy1_A 168 RG-WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYA----------------------EEVYFFYSEYLI 224 (493)
T ss_dssp HT-CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTC----------------------HHHHHHHHHHHH
T ss_pred hh-ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCC----------------------HHHHHHHHHHHH
Confidence 32 1344555544443221 11 345677888888876543 899999999999
Q ss_pred HCCCHHHHHHHHHHHHhcCCCChhHHHHHHHH----------------------------------------HHHcCCHH
Q 035707 580 SLSQWRDAEVCLSKSKAINPYSASGWHSTGLL----------------------------------------YEAKGLQQ 619 (713)
Q Consensus 580 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~----------------------------------------~~~~g~~~ 619 (713)
..|+.+.|...|++++.. |.+...|...+.. ..+.+..+
T Consensus 225 ~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~ 303 (493)
T 2uy1_A 225 GIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLE 303 (493)
T ss_dssp HTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999 9876555444332 22356678
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 035707 620 EALVSFRKALDAEPNHVPSLVSIARVLRQIGG-ESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFE 698 (713)
Q Consensus 620 eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~ 698 (713)
.|...|+++ ...+.....|...+.+-...++ .+ .|+..|+.+++..|+++..|...+......|+ .+.|...|+
T Consensus 304 ~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~--~ar~ife~al~~~~~~~~~~~~yid~e~~~~~--~~~aR~l~e 378 (493)
T 2uy1_A 304 LFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRA--TPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGD--EENARALFK 378 (493)
T ss_dssp HHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSH--HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred HHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChH--HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 889999998 4333355677777777766664 65 89999999999999988888888888888999 999999888
Q ss_pred HH
Q 035707 699 AA 700 (713)
Q Consensus 699 ~a 700 (713)
++
T Consensus 379 r~ 380 (493)
T 2uy1_A 379 RL 380 (493)
T ss_dssp HS
T ss_pred HH
Confidence 86
No 193
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.06 E-value=1.8e-09 Score=86.64 Aligned_cols=86 Identities=24% Similarity=0.459 Sum_probs=66.3
Q ss_pred ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 035707 565 SLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIAR 644 (713)
Q Consensus 565 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~ 644 (713)
+....++..+|.++...|++++|+.+|++++..+|.++.++..+|.++...|++++|+..|++++.++|+++.++..+|.
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 34467777788888888888888888888888777777777788888888888888888888887777777777777777
Q ss_pred HHHHhc
Q 035707 645 VLRQIG 650 (713)
Q Consensus 645 ~~~~~g 650 (713)
++...|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 776654
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.06 E-value=2.5e-10 Score=95.72 Aligned_cols=93 Identities=12% Similarity=0.144 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHH
Q 035707 568 METWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNH------VPSLVS 641 (713)
Q Consensus 568 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~ 641 (713)
+..|..+|.++...|++++|+..|++++.++|.++.+++++|.++...|++++|+..|++++.++|++ ..++..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 66788888888888888888888888888888888888888888888888888888888888888887 777888
Q ss_pred HHHHHHHhcCCChHHHHHHHH
Q 035707 642 IARVLRQIGGESMATIRCFLT 662 (713)
Q Consensus 642 la~~~~~~g~~~l~~A~~~~~ 662 (713)
+|.++...|+++ .|+..++
T Consensus 84 ~~~~~~~~~~~~--~a~~~~~ 102 (111)
T 2l6j_A 84 LELAQGAVGSVQ--IPVVEVD 102 (111)
T ss_dssp HHHHHHHHHCCC--CCSSSSS
T ss_pred HHHHHHHHHhHh--hhHhHHH
Confidence 888888888776 5555443
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.02 E-value=1.5e-10 Score=97.14 Aligned_cols=95 Identities=18% Similarity=0.181 Sum_probs=89.0
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC------HHH
Q 035707 601 SASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTN------TTA 674 (713)
Q Consensus 601 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~------~~~ 674 (713)
++..+..+|.++...|++++|+..|++++.++|+++.++.++|.++...|+++ +|+..++++++++|++ ..+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYT--QAIQMCQQGLRYTSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHhCCCccHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999997 9999999999999999 889
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHH
Q 035707 675 WYNLGLLYKTYAGASALEAVECFEA 699 (713)
Q Consensus 675 ~~~lg~~~~~~g~~~~~~A~~~~~~ 699 (713)
++.+|.++...|+ +++|+..|++
T Consensus 81 ~~~~~~~~~~~~~--~~~a~~~~~~ 103 (111)
T 2l6j_A 81 QYRLELAQGAVGS--VQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHC--CCCCSSSSSS
T ss_pred HHHHHHHHHHHHh--HhhhHhHHHH
Confidence 9999999999999 8888776654
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.01 E-value=2.2e-09 Score=90.75 Aligned_cols=100 Identities=17% Similarity=0.145 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 035707 586 DAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDAL 665 (713)
Q Consensus 586 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al 665 (713)
+|+..|+++++.+|.++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|+++ +|+..|++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRA--GARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHH--HHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999987 9999999999
Q ss_pred hhCCC--CHHHHHHHHHHHHHhCC
Q 035707 666 RLDRT--NTTAWYNLGLLYKTYAG 687 (713)
Q Consensus 666 ~~~p~--~~~~~~~lg~~~~~~g~ 687 (713)
++.|. +......+...+...|+
T Consensus 81 ~~~~~~~~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 81 AAAQSRGDQQVVKELQVFLRRLAR 104 (115)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HhccccccHHHHHHHHHHHHHhcc
Confidence 98774 44555555555555544
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.00 E-value=2.1e-09 Score=86.20 Aligned_cols=85 Identities=27% Similarity=0.370 Sum_probs=80.8
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 035707 600 YSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLG 679 (713)
Q Consensus 600 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg 679 (713)
.++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|+++ +|+.+++++++.+|+++.++..+|
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~a~~~~p~~~~~~~~l~ 84 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYD--EAIEYYQKALELDPNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHH--HHHHHHHHHHhcCCCCHHHHHHHH
Confidence 457789999999999999999999999999999999999999999999999997 999999999999999999999999
Q ss_pred HHHHHhC
Q 035707 680 LLYKTYA 686 (713)
Q Consensus 680 ~~~~~~g 686 (713)
.++...|
T Consensus 85 ~~~~~~g 91 (91)
T 1na3_A 85 NAKQKQG 91 (91)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9998765
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.99 E-value=2.4e-09 Score=90.49 Aligned_cols=83 Identities=18% Similarity=0.197 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 035707 424 QALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSL 503 (713)
Q Consensus 424 ~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 503 (713)
+|+..|++++ ..+|+++.+++.+|.++...|++++|+..|++++..+|.+. .+|..+|.++...|++++|+..|++++
T Consensus 3 ~a~~~~~~al-~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAML-AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYS-VAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHH-TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5788999999 99999999999999999999999999999999999999998 999999999999999999999999999
Q ss_pred hccCC
Q 035707 504 DQTGK 508 (713)
Q Consensus 504 ~~~p~ 508 (713)
+..|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 98763
No 199
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.95 E-value=1.3e-09 Score=89.21 Aligned_cols=93 Identities=12% Similarity=0.086 Sum_probs=72.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 035707 606 HSTGLLYEAKGLQQEALVSFRKALDAEPNHVP-SLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKT 684 (713)
Q Consensus 606 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 684 (713)
+.+|..+...|++++|+..|+++++.+|+++. ++..+|.++...|+++ +|+..|+++++++|+++.++..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~------- 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQ--KALNNYQSAIELNPDSPALQAR------- 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHH--HHHHHHHHHHHHCTTSTHHHHH-------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhcCCCcHHHHHH-------
Confidence 45677777788888888888888888888877 8888888888888876 8888888888888887777644
Q ss_pred hCCCCHHHHHHHHHHHHccccCCCCC
Q 035707 685 YAGASALEAVECFEAAALLEESAPVE 710 (713)
Q Consensus 685 ~g~~~~~~A~~~~~~a~~l~p~~~~~ 710 (713)
+. +.++..+|+++...+|+++..
T Consensus 75 -~~--~~~a~~~~~~~~~~~p~~~~~ 97 (99)
T 2kc7_A 75 -KM--VMDILNFYNKDMYNQLEHHHH 97 (99)
T ss_dssp -HH--HHHHHHHHCCTTHHHHCCSSC
T ss_pred -HH--HHHHHHHHHHHhccCcccccC
Confidence 56 778888888888888877654
No 200
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.88 E-value=7.1e-09 Score=85.06 Aligned_cols=85 Identities=15% Similarity=0.186 Sum_probs=70.2
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHH
Q 035707 436 MRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELL 515 (713)
Q Consensus 436 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 515 (713)
.+|+++.+++.+|.++...|++++|+..|+++++.+|+++ .+|..+|.++...|++++|+..|++++++.|...+....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~ 80 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYV-GTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDL 80 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHH
Confidence 4689999999999999999999999999999999999999 999999999999999999999999999886533333333
Q ss_pred HHHHHH
Q 035707 516 RTKAKL 521 (713)
Q Consensus 516 ~~la~~ 521 (713)
..+..+
T Consensus 81 ~~l~~~ 86 (100)
T 3ma5_A 81 SELQDA 86 (100)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.84 E-value=1.3e-08 Score=108.55 Aligned_cols=134 Identities=10% Similarity=-0.025 Sum_probs=109.9
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q 035707 518 KAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAI 597 (713)
Q Consensus 518 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 597 (713)
.+..+..+|++++|+..+++++++.... ....+|....++.+||.+|..+|+|++|+.++++++++
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~--------------lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i 380 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPV--------------FADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG 380 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTT--------------BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHh--------------cCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3445667899999999999999986543 45667888999999999999999999999999999875
Q ss_pred -----CCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHH---HHHHHHHHHHHhcCCChHHHHHHH
Q 035707 598 -----NPYS---ASGWHSTGLLYEAKGLQQEALVSFRKALDA-----EPNHVP---SLVSIARVLRQIGGESMATIRCFL 661 (713)
Q Consensus 598 -----~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~p~~~~---~~~~la~~~~~~g~~~l~~A~~~~ 661 (713)
.|++ ...++++|.+|..+|++++|+..|++++.+ .|+++. ....++.++..++.+. +|...|
T Consensus 381 ~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~--~ae~~~ 458 (490)
T 3n71_A 381 YMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFR--QNEFMY 458 (490)
T ss_dssp HHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 3444 457889999999999999999999999874 566654 4567788888888886 888888
Q ss_pred HHHHhh
Q 035707 662 TDALRL 667 (713)
Q Consensus 662 ~~al~~ 667 (713)
.++.+.
T Consensus 459 ~~~~~~ 464 (490)
T 3n71_A 459 HKMREA 464 (490)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887653
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.81 E-value=6.2e-09 Score=85.41 Aligned_cols=89 Identities=10% Similarity=0.102 Sum_probs=70.0
Q ss_pred cCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC--CHHH
Q 035707 597 INPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRT--NTTA 674 (713)
Q Consensus 597 ~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~--~~~~ 674 (713)
.+|+++.+++.+|.++...|++++|+..|+++++++|+++.+|..+|.+|...|+++ +|+..|++++++.|. +...
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~--~A~~~~~~al~l~~~~~~~~~ 79 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTD--DAIDTYAQGIEVAREEGTQKD 79 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHHHSCHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhhhcCCchhH
Confidence 468888999999999999999999999999999999999999999999999999987 999999999887653 3344
Q ss_pred HHHHHHHHHHhCC
Q 035707 675 WYNLGLLYKTYAG 687 (713)
Q Consensus 675 ~~~lg~~~~~~g~ 687 (713)
...+..++...+.
T Consensus 80 ~~~l~~~l~~~~~ 92 (100)
T 3ma5_A 80 LSELQDAKLKAEG 92 (100)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccc
Confidence 4445555544443
No 203
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.80 E-value=4.7e-09 Score=85.88 Aligned_cols=91 Identities=14% Similarity=0.130 Sum_probs=80.3
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 035707 572 HDLANVYTSLSQWRDAEVCLSKSKAINPYSAS-GWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIG 650 (713)
Q Consensus 572 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g 650 (713)
+..|..+...|++++|+..|+++++.+|.++. +++.+|.++...|++++|+..|++++.++|++..++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 56889999999999999999999999999999 99999999999999999999999999999999988744 2
Q ss_pred CCChHHHHHHHHHHHhhCCCCH
Q 035707 651 GESMATIRCFLTDALRLDRTNT 672 (713)
Q Consensus 651 ~~~l~~A~~~~~~al~~~p~~~ 672 (713)
.+. +++..|++++..+|+++
T Consensus 76 ~~~--~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 76 MVM--DILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHH--HHHHHHCCTTHHHHCCS
T ss_pred HHH--HHHHHHHHHhccCcccc
Confidence 333 78888888887777653
No 204
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.80 E-value=3e-08 Score=105.74 Aligned_cols=135 Identities=8% Similarity=-0.043 Sum_probs=111.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcc-----C-CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 035707 483 ARVLSAQKQFADAESVINDSLDQT-----G-KWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLV 556 (713)
Q Consensus 483 a~~~~~~g~~~~A~~~~~~al~~~-----p-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 556 (713)
+..+..+|+|++|+..+++++++. + ++.....+.++|.+|..+|+|++|+.++++++++....
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~----------- 384 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKL----------- 384 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-----------
Confidence 344567888888888888888763 2 12345678999999999999999999999999986544
Q ss_pred hhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCCh---hHHHHHHHHHHHcCCHHHHHHHHHHH
Q 035707 557 KNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAI-----NPYSA---SGWHSTGLLYEAKGLQQEALVSFRKA 628 (713)
Q Consensus 557 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~lg~~~~~~g~~~eA~~~~~~a 628 (713)
....+|.....+++||.+|..+|++++|+.+|++++++ .|+++ ....+++.++..++.+++|...|.++
T Consensus 385 ---lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 385 ---YHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp ---SCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---cCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888999999999999999999999999999875 46664 45678899999999999999999998
Q ss_pred Hhc
Q 035707 629 LDA 631 (713)
Q Consensus 629 l~~ 631 (713)
.+.
T Consensus 462 ~~~ 464 (490)
T 3n71_A 462 REA 464 (490)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 205
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.74 E-value=1.8e-07 Score=89.63 Aligned_cols=85 Identities=19% Similarity=0.206 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHh-cCCCh
Q 035707 584 WRDAEVCLSKSKAINPY--SASGWHSTGLLYEAK-----GLQQEALVSFRKALDAEPNH-VPSLVSIARVLRQI-GGESM 654 (713)
Q Consensus 584 ~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~-----g~~~eA~~~~~~al~~~p~~-~~~~~~la~~~~~~-g~~~l 654 (713)
...|...++++++++|. +..+|..+|.+|... |+.++|.++|+++++++|+. ..+++..|..++.. |+++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~- 257 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA- 257 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH-
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH-
Confidence 35666677777777776 455777777777663 67777777777777777754 77777777776663 6664
Q ss_pred HHHHHHHHHHHhhCCC
Q 035707 655 ATIRCFLTDALRLDRT 670 (713)
Q Consensus 655 ~~A~~~~~~al~~~p~ 670 (713)
+|..++++++..+|.
T Consensus 258 -~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 -GFDEALDRALAIDPE 272 (301)
T ss_dssp -HHHHHHHHHHHCCGG
T ss_pred -HHHHHHHHHHcCCCC
Confidence 677777777776654
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.74 E-value=1e-07 Score=83.34 Aligned_cols=111 Identities=17% Similarity=0.128 Sum_probs=98.2
Q ss_pred CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCCChHHH
Q 035707 582 SQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQ----IGGESMATI 657 (713)
Q Consensus 582 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~l~~A 657 (713)
+++++|+.+|+++.+... +.+. +|.+|...+..++|+.+|+++.+. .++.+++++|.+|.. .++++ +|
T Consensus 9 ~d~~~A~~~~~~aa~~g~--~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~--~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE--MFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLR--KA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC--TTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHH--HH
T ss_pred cCHHHHHHHHHHHHcCCC--Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHH--HH
Confidence 468899999999998864 4444 999999989999999999999986 689999999999998 66665 99
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHccc
Q 035707 658 RCFLTDALRLDRTNTTAWYNLGLLYKT----YAGASALEAVECFEAAALLE 704 (713)
Q Consensus 658 ~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~~~A~~~~~~a~~l~ 704 (713)
+.+|+++.+. .++.++++||.+|.. .++ +++|+.+|++|.+..
T Consensus 81 ~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d--~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGL--NDQDGCLILGYKQYAGKGVVKN--EKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcC--HHHHHHHHHHHHHCC
Confidence 9999999986 689999999999999 899 999999999998863
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.71 E-value=2e-07 Score=81.41 Aligned_cols=60 Identities=22% Similarity=0.212 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Q 035707 569 ETWHDLANVYTS----LSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEA----KGLQQEALVSFRKALD 630 (713)
Q Consensus 569 ~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~eA~~~~~~al~ 630 (713)
.+++.+|.+|.. .+++++|+.+|+++.+. .++.+++++|.+|.. .+++++|+.+|+++.+
T Consensus 58 ~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 334444444443 34444444444444332 233444444444444 3444444444444433
No 208
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.65 E-value=9.6e-07 Score=84.63 Aligned_cols=125 Identities=14% Similarity=-0.022 Sum_probs=102.8
Q ss_pred HHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHc-
Q 035707 378 YARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRER--DPYIIYHLCLENAEQ- 454 (713)
Q Consensus 378 ~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~--~~~~~~~la~~~~~~- 454 (713)
-+..++....+.+. .++++.|...+.............+...+|...+++++ +++|+ +..+|..+|..|...
T Consensus 139 ~~~~~l~~~~~~dv----e~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAl-eLDP~~~~GsA~~~LG~lY~~vP 213 (301)
T 3u64_A 139 RLHKVLSRCTRVDV----GTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERAC-DLWPSYQEGAVWNVLTKFYAAAP 213 (301)
T ss_dssp HHHHHHTTCCGGGH----HHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHH-HHCTTHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHcCcccc----HHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHH-HhCCCcccCHHHHHHHHHHHhCC
Confidence 34566665677777 89999988875422211111144567789999999999 99999 677999999999995
Q ss_pred ----CCHHHHHHHHHHHHhhhcCC-chHHHHHHHHHHHHc-CCHHHHHHHHHHHhhccCC
Q 035707 455 ----RKLDVALYYAKKLLNLEARS-NVKGYLLLARVLSAQ-KQFADAESVINDSLDQTGK 508 (713)
Q Consensus 455 ----g~~~~A~~~~~~~l~~~p~~-~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~ 508 (713)
|+.++|..+|+++++++|+. . .+++..|..+... |++++|...+++++...|.
T Consensus 214 p~~gGd~ekA~~~ferAL~LnP~~~i-d~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 214 ESFGGGMEKAHTAFEHLTRYCSAHDP-DHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TTTTCCHHHHHHHHHHHHHHCCTTCS-HHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CccCCCHHHHHHHHHHHHHhCCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 99999999999999999975 7 9999999999884 9999999999999999875
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.62 E-value=1e-06 Score=88.31 Aligned_cols=152 Identities=14% Similarity=0.086 Sum_probs=89.6
Q ss_pred hhCCCCHHHH--HHHHHHHHHcCC---HHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCC
Q 035707 435 TMRERDPYII--YHLCLENAEQRK---LDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKW 509 (713)
Q Consensus 435 ~~~p~~~~~~--~~la~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 509 (713)
...|.++.+| +..|..+...++ +.+|+.+|+++++++|++. .++..++.++... .. ..+
T Consensus 188 ~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a-~A~A~la~a~~~~-----------~~--~~~-- 251 (372)
T 3ly7_A 188 KILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFT-YARAEKALVDIVR-----------HS--QHP-- 251 (372)
T ss_dssp HHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHH-----------HH--HSC--
T ss_pred ccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHH-----------hc--cCC--
Confidence 4456666554 556666666554 4789999999999999998 8888877777611 00 011
Q ss_pred CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHH
Q 035707 510 DQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEV 589 (713)
Q Consensus 510 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 589 (713)
........ ...+.... ..+..+ +..+.++..++..+...|++++|+.
T Consensus 252 ~~~~~~~~----------l~~a~~a~-~a~~~~----------------------~~~a~~~~alal~~l~~gd~d~A~~ 298 (372)
T 3ly7_A 252 LDEKQLAA----------LNTEIDNI-VTLPEL----------------------NNLSIIYQIKAVSALVKGKTDESYQ 298 (372)
T ss_dssp CCHHHHHH----------HHHHHHHH-HTCGGG----------------------TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CchhhHHH----------HHHHHHHH-HhcccC----------------------CcCHHHHHHHHHHHHhCCCHHHHHH
Confidence 01100000 01111100 111111 3336666666666666677777777
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 035707 590 CLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHV 636 (713)
Q Consensus 590 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 636 (713)
.+++++.++| +..+|..+|.++...|++++|++.|.+|+.++|...
T Consensus 299 ~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 299 AINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 7777777765 455666667777777777777777777777777543
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.61 E-value=2.7e-07 Score=92.43 Aligned_cols=134 Identities=16% Similarity=0.073 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC----CHHHHHH----HHHH--HHhcCCCCH
Q 035707 570 TWHDLANVYTSLSQ---WRDAEVCLSKSKAINPYSASGWHSTGLLYEAKG----LQQEALV----SFRK--ALDAEPNHV 636 (713)
Q Consensus 570 ~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g----~~~eA~~----~~~~--al~~~p~~~ 636 (713)
-++..|..+...++ ..+|+.+|+++++++|+++.++..++.+|.... ....... .++. ++..+|.++
T Consensus 198 dl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a 277 (372)
T 3ly7_A 198 TNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLS 277 (372)
T ss_dssp HHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCH
Confidence 34445555555443 578999999999999999999988888775321 1111111 2222 225678999
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCCC
Q 035707 637 PSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALLEESAP 708 (713)
Q Consensus 637 ~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~~ 708 (713)
.++..++.++...|+++ +|+..+++++.++|+ ..+|..+|.++...|+ +++|++.|++|+.++|..+
T Consensus 278 ~~~~alal~~l~~gd~d--~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~--~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 278 IIYQIKAVSALVKGKTD--ESYQAINTGIDLEMS-WLNYVLLGKVYEMKGM--NREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHHHHHHHHHHHTCHH--HHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSCSHH
T ss_pred HHHHHHHHHHHhCCCHH--HHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCCCcC
Confidence 99999999999899997 999999999999974 7788899999999999 9999999999999999765
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.60 E-value=2.7e-07 Score=73.80 Aligned_cols=75 Identities=15% Similarity=0.053 Sum_probs=51.7
Q ss_pred CCCCHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccccCCC
Q 035707 632 EPNHVPSLVSIARVLRQIGGE-SMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAALLEESAP 708 (713)
Q Consensus 632 ~p~~~~~~~~la~~~~~~g~~-~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~~ 708 (713)
+|+++..+..+|.++...++. ..++|..+++++++.+|+++.+++.+|..++..|+ +++|+.+|+++++.+|.+|
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~--y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFR--FQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTCCCTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCCc
Confidence 466777777777777554441 11377777777777777777777777777777777 7777777777777776644
No 212
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.59 E-value=5.1e-06 Score=89.34 Aligned_cols=181 Identities=8% Similarity=-0.031 Sum_probs=143.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcC---------CHHHHHHHHHHHhhccCCCCcHH
Q 035707 443 IIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQK---------QFADAESVINDSLDQTGKWDQGE 513 (713)
Q Consensus 443 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~p~~~~~~ 513 (713)
.+..+...+.+.|++++|++.|+++.+..-.....+|..+..++...+ ..++|..+|+++....-.| +..
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P-d~~ 106 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP-NEA 106 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC-CHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC-CHH
Confidence 456677889999999999999999988653322267777777776544 3789999999998876433 778
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 035707 514 LLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSK 593 (713)
Q Consensus 514 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 593 (713)
.+..+...+.+.|++++|.++|+++.... ...+..+|..+...|.+.|++++|..+|++
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g---------------------~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFG---------------------IQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTT---------------------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------------------CCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 89999999999999999999999987642 123478899999999999999999999999
Q ss_pred HHhcC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Q 035707 594 SKAIN-PYSASGWHSTGLLYEAKGLQQEALVSFRKALDA--EPNHVPSLVSIARVL 646 (713)
Q Consensus 594 al~~~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~la~~~ 646 (713)
+.+.. ..+..+|..+...+.+.|+.++|.+.++++.+. .|+ ..++..+-..+
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps-~~T~~~l~~~F 220 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVS-KSTFDMIEEWF 220 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBC-HHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcC-HHHHHHHHHHH
Confidence 98753 226788999999999999999999999998764 454 44444444433
No 213
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.52 E-value=6.3e-06 Score=88.62 Aligned_cols=175 Identities=10% Similarity=0.005 Sum_probs=139.3
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhC
Q 035707 358 LLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMR 437 (713)
Q Consensus 358 ~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 437 (713)
+...-..|.+.|+.. +|+.+|+++....-..+. .+|..|-.++...+..... ...+..++|.++|+++. ...
T Consensus 29 l~~~id~c~k~G~~~-~A~~lf~~M~~~Gv~pd~----~tyn~Li~~c~~~~~~~~~--~~~~~l~~A~~lf~~M~-~~G 100 (501)
T 4g26_A 29 LKQKLDMCSKKGDVL-EALRLYDEARRNGVQLSQ----YHYNVLLYVCSLAEAATES--SPNPGLSRGFDIFKQMI-VDK 100 (501)
T ss_dssp HHHHHHHTTTSCCHH-HHHHHHHHHHHHTCCCCH----HHHHHHHHHHTTCCCCSSS--SCCHHHHHHHHHHHHHH-HTT
T ss_pred HHHHHHHHHhCCCHH-HHHHHHHHHHHcCCCCCH----hHHHHHHHHHHhCCchhhh--hhcchHHHHHHHHHHHH-HhC
Confidence 344457889999999 999999999884444455 6777666666544332111 23466799999999988 543
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHH
Q 035707 438 -ERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLR 516 (713)
Q Consensus 438 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 516 (713)
+.|..++..+...|.+.|++++|...|+++.+..-.....+|..+...+.+.|+.++|..+|+.+.+..-.| +...+.
T Consensus 101 ~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P-d~~ty~ 179 (501)
T 4g26_A 101 VVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP-EEPELA 179 (501)
T ss_dssp CCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC-CHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-CHHHHH
Confidence 457889999999999999999999999999876432222789999999999999999999999999876443 678899
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH
Q 035707 517 TKAKLQIAQGRLKNAIETYVNLLAV 541 (713)
Q Consensus 517 ~la~~~~~~g~~~~A~~~~~~~l~~ 541 (713)
.+...+.+.|+.++|.++++++.+.
T Consensus 180 ~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 180 ALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999998764
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.42 E-value=1.6e-06 Score=90.99 Aligned_cols=102 Identities=16% Similarity=0.090 Sum_probs=86.0
Q ss_pred HhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----C
Q 035707 524 AQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAI-----N 598 (713)
Q Consensus 524 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~ 598 (713)
..|+|++|+..+++++++.... ....+|....++.++|.+|..+|+|++|+.++++++++ .
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~--------------lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG 375 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSV--------------FEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYP 375 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTT--------------BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred hccCHHHHHHHHHHHHHHhhCc--------------cChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcC
Confidence 4588999999999999986443 45667888999999999999999999999999999975 3
Q ss_pred CCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHH
Q 035707 599 PYS---ASGWHSTGLLYEAKGLQQEALVSFRKALDA-----EPNHVPSL 639 (713)
Q Consensus 599 p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~p~~~~~~ 639 (713)
|++ ...++++|.+|..+|++++|+..|++|+++ .|+++.+.
T Consensus 376 ~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 376 VYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred CCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 444 456899999999999999999999999874 57776544
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.36 E-value=2.3e-06 Score=68.42 Aligned_cols=70 Identities=14% Similarity=0.091 Sum_probs=50.0
Q ss_pred ccHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 035707 565 SLEMETWHDLANVYTSLSQ---WRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPN 634 (713)
Q Consensus 565 ~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 634 (713)
|.++.++..+|.++...++ .++|...++++++.+|+++.+++.+|..++..|+|++|+..++++++.+|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4456777777777765544 577777777777777777777777777777777777777777777777766
No 216
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.34 E-value=2.7e-06 Score=73.51 Aligned_cols=96 Identities=13% Similarity=-0.002 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHhcCCChHHHH
Q 035707 584 WRDAEVCLSKSKAINPYSASGWHSTGLLYEAKG---LQQEALVSFRKALDAE-P-NHVPSLVSIARVLRQIGGESMATIR 658 (713)
Q Consensus 584 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~eA~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~l~~A~ 658 (713)
...+.+.|.+.+..+|.+..+.+.+|+++.+.+ +.++++..++..++.+ | ++.++++++|..+.+.|+|+ +|+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~--~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE--KAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHH--HHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHH--HHH
Confidence 345667777777777888888888888888877 5668888888888887 6 56788888888888888887 899
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHH
Q 035707 659 CFLTDALRLDRTNTTAWYNLGLL 681 (713)
Q Consensus 659 ~~~~~al~~~p~~~~~~~~lg~~ 681 (713)
.+++++++++|+|..+....-.+
T Consensus 92 ~y~~~lL~ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKELERLI 114 (152)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHH
Confidence 99999999999888776654443
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.33 E-value=1.2e-06 Score=75.77 Aligned_cols=90 Identities=10% Similarity=-0.028 Sum_probs=79.1
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHhhC-C-CCHHHHHHHHHHHHHhCCCCHHHH
Q 035707 617 LQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGE-SMATIRCFLTDALRLD-R-TNTTAWYNLGLLYKTYAGASALEA 693 (713)
Q Consensus 617 ~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~l~~A~~~~~~al~~~-p-~~~~~~~~lg~~~~~~g~~~~~~A 693 (713)
....+.+.|.+.+..+|.+.++.+++|+++.+.++. +..+++..++..++.+ | ++.+++|+||..|++.|+ |++|
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~--Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE--YEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSC--HHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccC--HHHH
Confidence 345677888888888899999999999999997732 1239999999999998 7 568999999999999999 9999
Q ss_pred HHHHHHHHccccCCC
Q 035707 694 VECFEAAALLEESAP 708 (713)
Q Consensus 694 ~~~~~~a~~l~p~~~ 708 (713)
..+++++++++|+|.
T Consensus 91 ~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHHCTTCH
T ss_pred HHHHHHHHhcCCCCH
Confidence 999999999999885
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.28 E-value=1.9e-06 Score=90.53 Aligned_cols=113 Identities=11% Similarity=0.069 Sum_probs=89.4
Q ss_pred HHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----
Q 035707 522 QIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAI---- 597 (713)
Q Consensus 522 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 597 (713)
+..+|++++|+..+++++++.... ....+|....++.++|.+|..+|+|++|+.++++++.+
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~--------------lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~ 362 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSER--------------LPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIF 362 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCC--------------CCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCc--------------CCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHH
Confidence 456889999999999998764322 34556777899999999999999999999999999875
Q ss_pred -CCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHH---HHHHHHHHHH
Q 035707 598 -NPYS---ASGWHSTGLLYEAKGLQQEALVSFRKALDA-----EPNHVPS---LVSIARVLRQ 648 (713)
Q Consensus 598 -~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~p~~~~~---~~~la~~~~~ 648 (713)
.|++ ...++++|.+|..+|++++|+..|++++++ .|+++.+ +.+++.+...
T Consensus 363 lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 363 FPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp SCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 3444 456889999999999999999999999874 5777654 3445555443
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.26 E-value=6.3e-06 Score=86.36 Aligned_cols=104 Identities=12% Similarity=0.023 Sum_probs=83.8
Q ss_pred HcCCHHHHHHHHHHHhhcc-----C-CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhccc
Q 035707 488 AQKQFADAESVINDSLDQT-----G-KWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQN 561 (713)
Q Consensus 488 ~~g~~~~A~~~~~~al~~~-----p-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 561 (713)
..|+|++|+..+++++++. | ++.....+.++|.+|..+|+|++|+.++++++.+.... ..
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~--------------lG 375 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKH--------------YP 375 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------------SC
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH--------------cC
Confidence 3567788888887777652 2 11344578899999999999999999999999886543 46
Q ss_pred CCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCChhHH
Q 035707 562 HDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAI-----NPYSASGW 605 (713)
Q Consensus 562 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~ 605 (713)
..+|.....+++||.+|..+|++++|+..|++++++ .|+++.+.
T Consensus 376 ~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 376 VYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred CCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 678888999999999999999999999999999875 46666544
No 220
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.26 E-value=6.9e-06 Score=67.41 Aligned_cols=76 Identities=16% Similarity=0.145 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 035707 568 METWHDLANVYTSLSQWRDAEVCLSKSKAIN-------PYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLV 640 (713)
Q Consensus 568 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 640 (713)
+.-++.+|..++..|+|..|+..|+++++.. +..+.++..+|.++.+.|++++|+..+++++.++|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 4556777888888888888888888777642 234566777777777777777777777777777777777766
Q ss_pred HHH
Q 035707 641 SIA 643 (713)
Q Consensus 641 ~la 643 (713)
+++
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 665
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.22 E-value=1e-05 Score=84.95 Aligned_cols=114 Identities=10% Similarity=-0.054 Sum_probs=91.2
Q ss_pred HHHHcCCHHHHHHHHHHHhhcc-----C-CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 035707 485 VLSAQKQFADAESVINDSLDQT-----G-KWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKN 558 (713)
Q Consensus 485 ~~~~~g~~~~A~~~~~~al~~~-----p-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 558 (713)
-+..+|++++|+..++++++.. | ++....++.+++.+|..+|+|++|+.++++++.+....
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~------------- 362 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIF------------- 362 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-------------
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHH-------------
Confidence 3456789999999999998763 2 11235578899999999999999999999999986543
Q ss_pred cccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCChhHH---HHHHHHH
Q 035707 559 RQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAI-----NPYSASGW---HSTGLLY 612 (713)
Q Consensus 559 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~---~~lg~~~ 612 (713)
....+|.....+++||.+|..+|++++|+.+|++++++ .|+++.+. .+++.+.
T Consensus 363 -lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~ 423 (429)
T 3qwp_A 363 -FPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECD 423 (429)
T ss_dssp -SCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHH
T ss_pred -cCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 45677888999999999999999999999999999875 56666543 4444444
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.21 E-value=2e-05 Score=64.55 Aligned_cols=85 Identities=9% Similarity=-0.058 Sum_probs=72.3
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHH
Q 035707 511 QGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVC 590 (713)
Q Consensus 511 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 590 (713)
++.-.+.+|..+...|+|..|+.+|+.++...+.. .........++..+|.++.++|+++.|+.+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~---------------~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~ 68 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEG---------------EISTIDKVSVLDYLSYAVYQQGDLDKALLL 68 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT---------------CCCSSCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhcc---------------CCCcccHHHHHHHHHHHHHHccCHHHHHHH
Confidence 35567899999999999999999999999886432 111345689999999999999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHH
Q 035707 591 LSKSKAINPYSASGWHSTGL 610 (713)
Q Consensus 591 ~~~al~~~p~~~~~~~~lg~ 610 (713)
+++++++.|++..+..+++.
T Consensus 69 ~~~al~l~P~~~~~~~n~~~ 88 (104)
T 2v5f_A 69 TKKLLELDPEHQRANGNLKY 88 (104)
T ss_dssp HHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHhhHHH
Confidence 99999999999998888773
No 223
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.61 E-value=0.00041 Score=57.57 Aligned_cols=96 Identities=13% Similarity=0.025 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHH---HHHHHHHHHhcC-C-CCHHHHHHHHHHHHHhcCCChHHHH
Q 035707 584 WRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQE---ALVSFRKALDAE-P-NHVPSLVSIARVLRQIGGESMATIR 658 (713)
Q Consensus 584 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~e---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~l~~A~ 658 (713)
...+...|.+....++.+..+.+.+|+++....+... ++..++..+..+ | ..-++++.+|..+.+.|+|+ +|+
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~--~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE--KAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH--HHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH--HHH
Confidence 3455566666666666777888888888877776655 777887777765 4 45577888888888888886 888
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHH
Q 035707 659 CFLTDALRLDRTNTTAWYNLGLL 681 (713)
Q Consensus 659 ~~~~~al~~~p~~~~~~~~lg~~ 681 (713)
.+++..++.+|+|..+......+
T Consensus 95 ~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHH
Confidence 88888888888887776554443
No 224
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.55 E-value=0.0013 Score=55.76 Aligned_cols=127 Identities=13% Similarity=0.001 Sum_probs=98.0
Q ss_pred CcHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCC
Q 035707 510 DQGELLRTKAKLQIAQGRL------KNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQ 583 (713)
Q Consensus 510 ~~~~~~~~la~~~~~~g~~------~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 583 (713)
.+.+.|..........|++ ++-++.|++++...|... ..........|...|.. ...++
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k--------------~~~wrrYI~LWIrYA~~-~ei~D 75 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK--------------YGQNESFARIQVRFAEL-KAIQE 75 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG--------------GTTCHHHHHHHHHHHHH-HHHHC
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc--------------cccHHHHHHHHHHHHHH-HHhcC
Confidence 6788888888888888888 888889999988876431 11223457778888865 56699
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC
Q 035707 584 WRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGE 652 (713)
Q Consensus 584 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 652 (713)
.++|.+.|+.++.+....+.+|...|....++|+.+.|.+.+.+++.+.|.....+ ..+.--.+.|..
T Consensus 76 ~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l-e~a~~nl~~~~~ 143 (161)
T 4h7y_A 76 PDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML-EIALRNLNLQKK 143 (161)
T ss_dssp GGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH-HHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH-HHHHHhhhcCCC
Confidence 99999999999988777789999999999999999999999999999998866543 333333444443
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.52 E-value=0.0011 Score=55.06 Aligned_cols=94 Identities=10% Similarity=0.015 Sum_probs=75.6
Q ss_pred HhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhh-cCCchHHHHHHHHHHHHcCCHHH
Q 035707 419 ILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDV---ALYYAKKLLNLE-ARSNVKGYLLLARVLSAQKQFAD 494 (713)
Q Consensus 419 ~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~~l~~~-p~~~~~~~~~la~~~~~~g~~~~ 494 (713)
......+...|.+.. ..++...++.+.+|+++.+..+... ++..++..++.+ |....+..+.+|..+++.|+|++
T Consensus 14 ~~~l~~~~~~y~~e~-~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEK-AAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHH-HHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHh-ccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 344567777888887 7778889999999999999887766 888999888876 53333788999999999999999
Q ss_pred HHHHHHHHhhccCCCCcHHHH
Q 035707 495 AESVINDSLDQTGKWDQGELL 515 (713)
Q Consensus 495 A~~~~~~al~~~p~~~~~~~~ 515 (713)
|..+++.+++..| .+..+.
T Consensus 93 A~~~~~~lL~~eP--~n~QA~ 111 (126)
T 1nzn_A 93 ALKYVRGLLQTEP--QNNQAK 111 (126)
T ss_dssp HHHHHHHHHHHCT--TCHHHH
T ss_pred HHHHHHHHHHhCC--CCHHHH
Confidence 9999999999998 444443
No 226
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.46 E-value=0.0012 Score=55.97 Aligned_cols=107 Identities=16% Similarity=-0.007 Sum_probs=71.1
Q ss_pred CccHHHHHHHHHHHHHHCCCH------HHHHHHHHHHHhcCCCC--------hhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 035707 564 RSLEMETWHDLANVYTSLSQW------RDAEVCLSKSKAINPYS--------ASGWHSTGLLYEAKGLQQEALVSFRKAL 629 (713)
Q Consensus 564 ~~~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~p~~--------~~~~~~lg~~~~~~g~~~eA~~~~~~al 629 (713)
.|.+++.|..........|+. ++-++.|++++..-|.. ...|...+.. ...++.++|...|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence 456677777777777777777 77777777777665543 2234444543 34467777777777777
Q ss_pred hcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHH
Q 035707 630 DAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTT 673 (713)
Q Consensus 630 ~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~ 673 (713)
.+....+.+|...|..-.++|+.. .|++.+.+++.+.|...+
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~--kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVK--KSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHTTCBCHH
T ss_pred HHhHHHHHHHHHHHHHHHHcccHH--HHHHHHHHHhccCCCcHH
Confidence 766666666777777667777665 777777777777776544
No 227
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.24 E-value=0.0038 Score=54.17 Aligned_cols=28 Identities=18% Similarity=0.037 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 035707 511 QGELLRTKAKLQIAQGRLKNAIETYVNL 538 (713)
Q Consensus 511 ~~~~~~~la~~~~~~g~~~~A~~~~~~~ 538 (713)
+.++.+.++.++...+++++|+..++.+
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 4578899999999999999999987763
No 228
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.21 E-value=0.0036 Score=54.37 Aligned_cols=47 Identities=28% Similarity=0.167 Sum_probs=34.6
Q ss_pred ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 035707 565 SLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLY 612 (713)
Q Consensus 565 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 612 (713)
+.+.++.+.++.||...+++++|+..++..-.. ..++.+...||.+|
T Consensus 119 ~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 119 PSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR-QRTPKINMLLANLY 165 (167)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-GCCHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-hcCHHHHHHHHHHh
Confidence 446788888999999999999999887754222 23567777777765
No 229
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.82 E-value=0.0041 Score=51.68 Aligned_cols=80 Identities=6% Similarity=-0.015 Sum_probs=62.6
Q ss_pred ChhHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHH
Q 035707 601 SASGWHSTGLLYEAKGLQ---QEALVSFRKALDAEPN-HVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWY 676 (713)
Q Consensus 601 ~~~~~~~lg~~~~~~g~~---~eA~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~ 676 (713)
++.+.+++|+++....+. .+++..++..++.+|. .-+.++.+|..+.+.|+|+ +|+.+.+..++.+|+|..+..
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~--~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYS--MAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHH--HHHHHHHHHHTTCTTCHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHH--HHHHHHHHHHhhCCCCHHHHH
Confidence 677888888888877654 4688888888887774 4678888888888888887 888888888888888887766
Q ss_pred HHHHHH
Q 035707 677 NLGLLY 682 (713)
Q Consensus 677 ~lg~~~ 682 (713)
....+-
T Consensus 117 Lk~~Ie 122 (134)
T 3o48_A 117 LKSMVE 122 (134)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 230
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.58 E-value=0.053 Score=45.68 Aligned_cols=71 Identities=3% Similarity=0.014 Sum_probs=62.0
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCC
Q 035707 438 ERDPYIIYHLCLENAEQRKL---DVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGK 508 (713)
Q Consensus 438 p~~~~~~~~la~~~~~~g~~---~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 508 (713)
...+.+.+++|+++.+..+. .+++..++..+...|....+.++.+|..+++.|+|++|..+.+..++..|.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 45788999999999988765 478899999999888766589999999999999999999999999999994
No 231
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.54 E-value=0.018 Score=48.49 Aligned_cols=80 Identities=6% Similarity=-0.020 Sum_probs=57.2
Q ss_pred CCChhHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHH
Q 035707 599 PYSASGWHSTGLLYEAKGLQ---QEALVSFRKALDAEPN-HVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTA 674 (713)
Q Consensus 599 p~~~~~~~~lg~~~~~~g~~---~eA~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~ 674 (713)
..++.+.+++++++....+. .+++..++..+...|. .-+.++.+|..+.+.|+|+ +|+.+.+..++.+|+|..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~--~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYS--MAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHH--HHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHH--HHHHHHHHHHhcCCCcHHH
Confidence 34667777787777776643 4677777777777763 4567777888888888876 8888888888888887766
Q ss_pred HHHHHH
Q 035707 675 WYNLGL 680 (713)
Q Consensus 675 ~~~lg~ 680 (713)
......
T Consensus 114 ~~Lk~~ 119 (144)
T 1y8m_A 114 GALKSM 119 (144)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554433
No 232
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.49 E-value=0.025 Score=47.00 Aligned_cols=79 Identities=10% Similarity=-0.111 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 035707 567 EMETWHDLANVYTSLSQW---RDAEVCLSKSKAINPY-SASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSI 642 (713)
Q Consensus 567 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 642 (713)
.+.+.+++|+++.+..+. .+++.+++..+..+|. .-+.++.+|..+.+.|+|++|..+.+.+++..|++..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 478899999999988765 4689999999988884 477899999999999999999999999999999998776554
Q ss_pred HHH
Q 035707 643 ARV 645 (713)
Q Consensus 643 a~~ 645 (713)
..+
T Consensus 119 ~~I 121 (134)
T 3o48_A 119 SMV 121 (134)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 233
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.27 E-value=0.16 Score=51.78 Aligned_cols=173 Identities=14% Similarity=0.052 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchH-----HHHHHHHHHHH-cCCHHHHHHHHHHHhhccCCCCcH---
Q 035707 442 YIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVK-----GYLLLARVLSA-QKQFADAESVINDSLDQTGKWDQG--- 512 (713)
Q Consensus 442 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-----~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~--- 512 (713)
.+.+.+|..|...|++++-.+++......-+.-+ . ....+-..+.. -+..+.-++++...++........
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSIS-KAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSC-HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568899999999999998888887655444333 2 22233333332 244455555666655432110111
Q ss_pred -HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHH
Q 035707 513 -ELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCL 591 (713)
Q Consensus 513 -~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 591 (713)
.+-..+|.+|...|+|.+|.+.+.++++.... ..+.....+++.....+|...+++.++...+
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~----------------~dd~~~llev~lle~~~~~~~~n~~k~k~~l 162 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKK----------------LDDKNLLVEVQLLESKTYHALSNLPKARAAL 162 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT----------------SSCTHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc----------------cccchhHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 13347899999999999999999999887543 1223455788889999999999999999999
Q ss_pred HHHHhcC---CCCh----hHHHHHHHHHH-HcCCHHHHHHHHHHHHhc
Q 035707 592 SKSKAIN---PYSA----SGWHSTGLLYE-AKGLQQEALVSFRKALDA 631 (713)
Q Consensus 592 ~~al~~~---p~~~----~~~~~lg~~~~-~~g~~~eA~~~~~~al~~ 631 (713)
.++.... +.+| .....-|.++. ..++|.+|...|-+++.-
T Consensus 163 ~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 163 TSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 9886543 1233 34556688888 899999999999998753
No 234
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.22 E-value=1.2 Score=45.32 Aligned_cols=175 Identities=12% Similarity=0.042 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHh
Q 035707 356 LELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKT 435 (713)
Q Consensus 356 ~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 435 (713)
.+.+.+|+++...|+.. +-.+++.........-.....+.....+-..+.... +..+.-++....++ +
T Consensus 20 ~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~----------~~~~~~~~~~~~~~-~ 87 (394)
T 3txn_A 20 QGILQQGELYKQEGKAK-ELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMD----------AGTGIEVQLCKDCI-E 87 (394)
T ss_dssp HHHHHHHHHHHHHTCHH-HHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSC----------CCHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCC----------CcHHHHHHHHHHHH-H
Confidence 46788899999999988 777777665542211111111233333333442221 11233334444444 2
Q ss_pred hCCCCHHH------HHHHHHHHHHcCCHHHHHHHHHHHHhhhcC-----CchHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 035707 436 MRERDPYI------IYHLCLENAEQRKLDVALYYAKKLLNLEAR-----SNVKGYLLLARVLSAQKQFADAESVINDSLD 504 (713)
Q Consensus 436 ~~p~~~~~------~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 504 (713)
-..+.-.. -..+|..|+..|+|.+|.+.+.++.+.-.. ...+++..-..++...+++.++...+.++..
T Consensus 88 ~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 88 WAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 22122112 237899999999999999999998874322 2235677788899999999999999999876
Q ss_pred cc----CCC-CcHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHH
Q 035707 505 QT----GKW-DQGELLRTKAKLQI-AQGRLKNAIETYVNLLAVL 542 (713)
Q Consensus 505 ~~----p~~-~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~ 542 (713)
.. ++| -.+.+...-|.++. ..++|.+|...|-.++...
T Consensus 168 ~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 168 TANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred hhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 53 211 13345566788888 8999999999999887553
No 235
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.12 E-value=0.57 Score=40.29 Aligned_cols=95 Identities=13% Similarity=0.027 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--h---
Q 035707 396 IANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLN--L--- 470 (713)
Q Consensus 396 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~--- 470 (713)
.-..+++.++ .-.|.+..++-.+. . -+...+.+.-+.||...++|..|+..++..+. .
T Consensus 34 eY~lL~~I~L-----------yyngEY~R~Lf~L~----~--lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d 96 (242)
T 3kae_A 34 EYRMLMSIVL-----------YLNGEYTRALFHLH----K--LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERD 96 (242)
T ss_dssp CTHHHHHHHH-----------HHTTCHHHHHHHHH----T--CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCC
T ss_pred HHHhhhhhhh-----------hhcchHhHHHHHHH----h--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 3345566666 56788888877654 2 24567888899999999999999999999983 2
Q ss_pred ------------hcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccC
Q 035707 471 ------------EARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTG 507 (713)
Q Consensus 471 ------------~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 507 (713)
+|.+....+..+|.++...|+.++|+.++......+|
T Consensus 97 ~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~ 145 (242)
T 3kae_A 97 PDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSF 145 (242)
T ss_dssp CCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred cccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCcc
Confidence 2333323567889999999999999999998888776
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.55 E-value=0.11 Score=57.45 Aligned_cols=61 Identities=13% Similarity=0.037 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 035707 568 METWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKA 628 (713)
Q Consensus 568 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~a 628 (713)
...+...+..+...|+++-|+.+.++++...|.....|+.|+.+|..+|+|+.|+-.+..+
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4566677888889999999999999999999999999999999999999999999888776
No 237
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.27 E-value=1.9 Score=46.83 Aligned_cols=244 Identities=11% Similarity=-0.011 Sum_probs=126.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHH--HHHHHHhhccCCCCcHHH
Q 035707 437 RERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAE--SVINDSLDQTGKWDQGEL 514 (713)
Q Consensus 437 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~--~~~~~al~~~p~~~~~~~ 514 (713)
.|.+....+.........|+-.+|....+++.......+ .....+...+...|...... .-++.++..+ +...
T Consensus 98 ~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p-~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~----~~~~ 172 (618)
T 1qsa_A 98 KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQP-NACDKLFSVWRASGKQDPLAYLERIRLAMKAG----NTGL 172 (618)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCC-THHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT----CHHH
T ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC----CHHH
Confidence 477888888888888889998888887777765554444 44444444444444332221 1222222221 1111
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 035707 515 LRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKS 594 (713)
Q Consensus 515 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 594 (713)
...++... +.-..++......+..+|........ .....+. ......++.......+.+.|...+.+.
T Consensus 173 a~~l~~~l---~~~~~~~a~~~~al~~~p~~~~~~~~--------~~~~~~~-~~~~~~~~~~rlar~d~~~A~~~~~~~ 240 (618)
T 1qsa_A 173 VTVLAGQM---PADYQTIASAIISLANNPNTVLTFAR--------TTGATDF-TRQMAAVAFASVARQDAENARLMIPSL 240 (618)
T ss_dssp HHHHHHTC---CGGGHHHHHHHHHHHHCGGGHHHHHH--------HSCCCHH-HHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHhC---CHHHHHHHHHHHHHHhChHhHHHHHh--------ccCCChh-hHHHHHHHHHHHHhcCHHHHHHHHHhh
Confidence 11111111 00001111111111222221110000 0000011 112233344444455888999988877
Q ss_pred HhcCCCChhH----HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC
Q 035707 595 KAINPYSASG----WHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRT 670 (713)
Q Consensus 595 l~~~p~~~~~----~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~ 670 (713)
....+.+... +..++.-....+...++...+.+.....+++.. ...++....+.|+++ .|..+|...-...+.
T Consensus 241 ~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~r~Alr~~d~~--~a~~~~~~l~~~~~~ 317 (618)
T 1qsa_A 241 AQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSL-IERRVRMALGTGDRR--GLNTWLARLPMEAKE 317 (618)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHH-HHHHHHHHHHHTCHH--HHHHHHHHSCTTGGG
T ss_pred hhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHH-HHHHHHHHHHCCCHH--HHHHHHHHccccccc
Confidence 5543333322 222333333344366778888876654443333 333333344668886 898888766554345
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHc
Q 035707 671 NTTAWYNLGLLYKTYAGASALEAVECFEAAAL 702 (713)
Q Consensus 671 ~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~ 702 (713)
.+...|-+|..+...|+ .++|..+|+++..
T Consensus 318 ~~r~~YW~~ra~~~~g~--~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 318 KDEWRYWQADLLLERGR--EAEAKEILHQLMQ 347 (618)
T ss_dssp SHHHHHHHHHHHHHTTC--HHHHHHHHHHHHT
T ss_pred cHhHHHHHHHHHHHcCC--HHHHHHHHHHHhc
Confidence 67788999999999999 9999999998875
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.27 E-value=0.11 Score=57.42 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcc
Q 035707 671 NTTAWYNLGLLYKTYAGASALEAVECFEAAALL 703 (713)
Q Consensus 671 ~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~l 703 (713)
.+.=|-.||.+..+.++ +++|+++|+.++..
T Consensus 612 s~lEWEiLGlla~RL~h--~~EA~~a~~~~l~~ 642 (754)
T 4gns_B 612 SGLEWELLGLIMLRTWH--WEDAVACLRTSIVA 642 (754)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHh
Confidence 45669999999999999 99999999999864
No 239
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=95.18 E-value=0.19 Score=56.89 Aligned_cols=97 Identities=8% Similarity=-0.176 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----hcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHH
Q 035707 442 YIIYHLCLENAEQRKLDVALYYAKKLLNL-----EARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLR 516 (713)
Q Consensus 442 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 516 (713)
..+..+...|++.|+.++|...|..+.+. .| +. .+|..+...+.+.|++++|.++|+++.+..-.| +...|.
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dv-vTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYn 204 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TL-DMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CH-hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHH
Confidence 45667777888888888888888665432 23 23 678888888888888888888888887765433 667777
Q ss_pred HHHHHHHHhCCH-HHHHHHHHHHHHH
Q 035707 517 TKAKLQIAQGRL-KNAIETYVNLLAV 541 (713)
Q Consensus 517 ~la~~~~~~g~~-~~A~~~~~~~l~~ 541 (713)
.+...+.+.|+. ++|.++|+++...
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 777788887774 6777888877665
No 240
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=95.10 E-value=0.31 Score=55.29 Aligned_cols=101 Identities=12% Similarity=0.023 Sum_probs=84.9
Q ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----cCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHH
Q 035707 566 LEMETWHDLANVYTSLSQWRDAEVCLSKSKA-----INPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAE-PNHVPSL 639 (713)
Q Consensus 566 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~ 639 (713)
.....+..+...|++.|+.++|..+|.++.+ ..| +..+|+.+...|++.|+.++|.+.|+++.... ..+..+|
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3466789999999999999999999987653 234 78899999999999999999999999998753 3357889
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhC
Q 035707 640 VSIARVLRQIGGESMATIRCFLTDALRLD 668 (713)
Q Consensus 640 ~~la~~~~~~g~~~l~~A~~~~~~al~~~ 668 (713)
+.+-..+.+.|+.. ++|..+|++..+..
T Consensus 204 ntLI~glcK~G~~~-e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 204 AAALQCMGRQDQDA-GTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHHHHTCCH-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCcH-HHHHHHHHHHHHcC
Confidence 99999999999863 37899999988754
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.94 E-value=4.2 Score=42.32 Aligned_cols=263 Identities=12% Similarity=0.027 Sum_probs=152.4
Q ss_pred HhcHHHHHHHHHHHHHhh---C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHH----HH
Q 035707 419 ILKQSQALVALETAEKTM---R---ERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVL----SA 488 (713)
Q Consensus 419 ~~~~~~A~~~~~~al~~~---~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~----~~ 488 (713)
.+++++|++.+.... +. . +....+...+...+...|+++...+.+.-..+...... .+...+.... ..
T Consensus 29 ~~~~~~a~e~ll~lE-K~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk-~ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLE-KKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK-LSIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHH-HHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH-HHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-HHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHhc
Confidence 467788888775544 22 1 33467788899999999999998887766555433322 2222222111 11
Q ss_pred cCCHHH--HHHHHHHHhhccC-CC----CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhccc
Q 035707 489 QKQFAD--AESVINDSLDQTG-KW----DQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQN 561 (713)
Q Consensus 489 ~g~~~~--A~~~~~~al~~~p-~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 561 (713)
....+. -+...+....... .. ....+...++.++...|++.+|...+..+..-.- ..
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~----------------~~ 170 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETY----------------GS 170 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC----------------SS
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH----------------hc
Confidence 222221 1111111111111 00 1345667899999999999999999998864321 11
Q ss_pred CCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCCh----hHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-
Q 035707 562 HDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKA---INPYSA----SGWHSTGLLYEAKGLQQEALVSFRKALDAEP- 633 (713)
Q Consensus 562 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~----~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p- 633 (713)
.+...-.+.+.....+|...++|..|...++++.. ..+..+ ..+...|.++...++|.+|-.+|..++....
T Consensus 171 ~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~ 250 (445)
T 4b4t_P 171 MEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI 250 (445)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence 12233478888999999999999999999998742 122232 3566789999999999999999999876421
Q ss_pred -CCHH---HHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHcc
Q 035707 634 -NHVP---SLVSIARVLRQIGGESMATIRCFLTDALRLDRT--NTTAWYNLGLLYKTY--AGASALEAVECFEAAALL 703 (713)
Q Consensus 634 -~~~~---~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~--g~~~~~~A~~~~~~a~~l 703 (713)
+++. .....+.++.-...++ +.--..+.+... ++. ....+..+..++... .+ +......|...+.-
T Consensus 251 ~~d~~~~~~~L~~~v~~~iLa~~~-~~~~~ll~~~~~-~~~~~~l~~~~~L~k~f~~~~L~~--~~~~~~~~~~~L~~ 324 (445)
T 4b4t_P 251 KSDEAKWKPVLSHIVYFLVLSPYG-NLQNDLIHKIQN-DNNLKKLESQESLVKLFTTNELMR--WPIVQKTYEPVLNE 324 (445)
T ss_dssp HSCHHHHHHHHHHHHHHHHHSSCS-STTHHHHHSHHH-HSSCHHHHHHHHHHHHHHHCCSSS--HHHHHHHTCSSTTT
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCC-chHHHHHHHHhh-cccccccHHHHHHHHHHHhchHhh--hHHHHHHHHHHhcc
Confidence 2222 2222222333333222 011122222221 222 234566677776653 45 77777766654443
No 242
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.57 E-value=0.37 Score=54.99 Aligned_cols=47 Identities=11% Similarity=0.036 Sum_probs=35.3
Q ss_pred HHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 035707 450 ENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDS 502 (713)
Q Consensus 450 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 502 (713)
.....|+++.|.+..+. .++. ..|..+|..+...++++.|+.+|.++
T Consensus 661 ~~l~~~~~~~A~~~~~~-----~~~~-~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTD-----ESAE-MKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHTCHHHHHHHHTT-----CCCH-HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHh-----hCcH-hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34567888888877543 2445 78888888888888888888888876
No 243
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.39 E-value=0.9 Score=42.91 Aligned_cols=121 Identities=14% Similarity=-0.052 Sum_probs=89.2
Q ss_pred HHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHH
Q 035707 577 VYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMAT 656 (713)
Q Consensus 577 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~ 656 (713)
...+.|+.++|+......++.+|.++.....+..+++-.|+++.|.+.++.+.+++|+....-..+..+. .
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI---------~ 76 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV---------K 76 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH---------H
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH---------H
Confidence 3567899999999999999999999999999999999999999999999999999998765432221111 1
Q ss_pred HHHHHHHHHhh-----CCCCHHHHHH---HHHHHHHhCCCCHHHHHHHHHHHHccccCCC
Q 035707 657 IRCFLTDALRL-----DRTNTTAWYN---LGLLYKTYAGASALEAVECFEAAALLEESAP 708 (713)
Q Consensus 657 A~~~~~~al~~-----~p~~~~~~~~---lg~~~~~~g~~~~~~A~~~~~~a~~l~p~~~ 708 (713)
|...=.+.+.- -+..+..|.. -+......|+ .++|.+.-.+|++..|..+
T Consensus 77 aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~--~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 77 AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQD--YEQVSELALQIEELRQEKG 134 (273)
T ss_dssp HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCC--HHHHHHHHHHHHhcCcccC
Confidence 22221222221 1233444543 3566667899 9999999999999877654
No 244
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.37 E-value=1.7 Score=38.26 Aligned_cols=44 Identities=32% Similarity=0.219 Sum_probs=22.6
Q ss_pred HcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 035707 453 EQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDS 502 (713)
Q Consensus 453 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 502 (713)
+.|+++.|.+..+.. ++. ..|..+|......|+++-|+.+|.++
T Consensus 17 ~lg~l~~A~e~a~~l-----~~~-~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL-----NDS-ITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH-----CCH-HHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh-----CCH-HHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 445555555554432 223 45555555555555555555555554
No 245
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.06 E-value=1.2 Score=39.36 Aligned_cols=82 Identities=13% Similarity=0.080 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 035707 568 METWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLR 647 (713)
Q Consensus 568 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~ 647 (713)
...|..+|......|+++-|+.||+++-. +..+..+|...|+.+.-.+.-+.+.... + ++....++.
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~kla~iA~~~g-~----~n~af~~~l 100 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSKMQNIAQTRE-D----FGSMLLNTF 100 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHHHHHHHHHTT-C----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHHHHHHHHHCc-c----HHHHHHHHH
Confidence 45666677777777777777776666432 2233344455555544443333333222 1 111223344
Q ss_pred HhcCCChHHHHHHHHHH
Q 035707 648 QIGGESMATIRCFLTDA 664 (713)
Q Consensus 648 ~~g~~~l~~A~~~~~~a 664 (713)
..|+++ ++++.|.+.
T Consensus 101 ~lGdv~--~~i~lL~~~ 115 (177)
T 3mkq_B 101 YNNSTK--ERSSIFAEG 115 (177)
T ss_dssp HHTCHH--HHHHHHHHT
T ss_pred HcCCHH--HHHHHHHHC
Confidence 556654 666655443
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.05 E-value=0.31 Score=49.97 Aligned_cols=63 Identities=16% Similarity=0.135 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 035707 568 METWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALD 630 (713)
Q Consensus 568 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 630 (713)
..+...++..+...|++.+|+..+++++..+|.+..+|..+-.++...|+..+|+..|+++-+
T Consensus 171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 171 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455667888899999999999999999999999999999999999999999999999988644
No 247
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.84 E-value=2.5 Score=47.96 Aligned_cols=106 Identities=15% Similarity=0.191 Sum_probs=57.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhc
Q 035707 480 LLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNR 559 (713)
Q Consensus 480 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 559 (713)
..++..+...|.+++|+...+ +.... ..+....|++++|.+..+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~----------~~~~~---f~~~l~~~~~~~A~~~~~~---------------------- 677 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP----------DQDQK---FELALKVGQLTLARDLLTD---------------------- 677 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC----------CHHHH---HHHHHHHTCHHHHHHHHTT----------------------
T ss_pred HHHHHHHHhCCChHHheecCC----------Ccchh---eehhhhcCCHHHHHHHHHh----------------------
Confidence 455566666777776665442 11111 2334566777777665432
Q ss_pred ccCCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 035707 560 QNHDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAI--------NPYSASGWHSTGLLYEAKGLQQEALVSF 625 (713)
Q Consensus 560 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~eA~~~~ 625 (713)
..+...|..+|..+.+.++++.|+.+|.++-.. ...+...+..++......|++..|...|
T Consensus 678 -----~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~ 746 (814)
T 3mkq_A 678 -----ESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAY 746 (814)
T ss_dssp -----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHH
Confidence 122567777777777777777777777765321 1223333334444444445554444443
No 248
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=93.82 E-value=0.36 Score=50.86 Aligned_cols=82 Identities=11% Similarity=0.180 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 035707 568 METWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLR 647 (713)
Q Consensus 568 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~ 647 (713)
...+..+|++......+..|..+|.+|..+.|.+...++.+|.+....|+.-+|+-+|.+++......+.+..++..++.
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 34677899999999999999999999999999999999999999999999999999999999887778888888887776
Q ss_pred Hh
Q 035707 648 QI 649 (713)
Q Consensus 648 ~~ 649 (713)
+.
T Consensus 232 ~~ 233 (497)
T 1ya0_A 232 KA 233 (497)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 249
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=93.71 E-value=1.2 Score=42.09 Aligned_cols=56 Identities=13% Similarity=0.189 Sum_probs=29.4
Q ss_pred HHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 035707 487 SAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQF 544 (713)
Q Consensus 487 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 544 (713)
.+.|++++|+..+...++..| .+......+..+++-.|+++.|.+.++.+.+++|.
T Consensus 8 l~~g~L~~al~~~~~~VR~~P--~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASP--KDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HhCCCHHHHHHHHHHHHHhCC--cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 344555555555555555555 44555555555555555555555555555555443
No 250
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.69 E-value=6.8 Score=44.38 Aligned_cols=252 Identities=12% Similarity=0.004 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhcc------CcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHH
Q 035707 356 LELLVASKICAENKVCIEEGITYARKALSMLQGK------CRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVAL 429 (713)
Q Consensus 356 ~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~------~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~ 429 (713)
.+++.+|.++. |... +++.++...+. .+.. +.....-+-..||.++.. .++ +++.+.+
T Consensus 414 GAllaLGli~a--g~~~-~~~~lL~~~L~-~~~~~~~~~~~~~ir~gAaLGLGla~~G-----------S~~-eev~e~L 477 (963)
T 4ady_A 414 GSLYGLGLIYA--GFGR-DTTDYLKNIIV-ENSGTSGDEDVDVLLHGASLGIGLAAMG-----------SAN-IEVYEAL 477 (963)
T ss_dssp HHHHHHHHHTT--TTTH-HHHHHHHHHHH-HHSSCCSCHHHHHHHHHHHHHHHHHSTT-----------CCC-HHHHHHH
T ss_pred HHHHHHHHhcC--CCcH-HHHHHHHHHHc-CccccccccccHHHHHHHHHHHHHHhcC-----------CCC-HHHHHHH
Confidence 45555665554 4445 78888888876 2220 122333456677777732 222 5677777
Q ss_pred HHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccC
Q 035707 430 ETAEKTMRERD--PYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTG 507 (713)
Q Consensus 430 ~~al~~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 507 (713)
...+ ..+... ..+-+.+|.++.-.|+-+.....+..+.....+.. .-...+|..+...|+.+.+..+++.......
T Consensus 478 ~~~L-~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~v-rR~aalgLGll~~g~~e~~~~li~~L~~~~d 555 (963)
T 4ady_A 478 KEVL-YNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNI-TRGLAVGLALINYGRQELADDLITKMLASDE 555 (963)
T ss_dssp HHHH-HTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHH-HHHHHHHHHHHTTTCGGGGHHHHHHHHHCSC
T ss_pred HHHH-hcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHH-HHHHHHHHHhhhCCChHHHHHHHHHHHhCCC
Confidence 7777 433211 13456778888888887766666666554322221 2333445555577888877777776654422
Q ss_pred CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHHHH
Q 035707 508 KWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWRDA 587 (713)
Q Consensus 508 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 587 (713)
..-...+-..+|..|...|+...-...+..+..- ++ .+..-...+|......|+.+.+
T Consensus 556 p~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~---------------------d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 556 SLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SN---------------------DDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp HHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SC---------------------HHHHHHHHHHHHHHTSSSCSSH
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-Cc---------------------HHHHHHHHHHHHhhccCCHHHH
Confidence 0001113345667777888864433355444431 11 1122222233334445555444
Q ss_pred HHHHHHHHhcCCCChhHHHHH----HHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcC
Q 035707 588 EVCLSKSKAINPYSASGWHST----GLLYEAKGLQQEALVSFRKALDAEPNHV---PSLVSIARVLRQIGG 651 (713)
Q Consensus 588 ~~~~~~al~~~p~~~~~~~~l----g~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~~~la~~~~~~g~ 651 (713)
...++.... ..++.+.+.. |.+....++ .+++..+.+... ++++. .+...||.+.....+
T Consensus 614 ~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~-~~aid~L~~L~~-D~d~~Vrq~Ai~ALG~Ig~gtnn 680 (963)
T 4ady_A 614 PRIVQLLSK--SHNAHVRCGTAFALGIACAGKGL-QSAIDVLDPLTK-DPVDFVRQAAMIALSMILIQQTE 680 (963)
T ss_dssp HHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCC-HHHHHHHHHHHT-CSSHHHHHHHHHHHHHHSTTCCT
T ss_pred HHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCc-HHHHHHHHHHcc-CCCHHHHHHHHHHHHHHhcCCcc
Confidence 444433332 2244444433 333322233 678888877754 44332 244555555544433
No 251
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.46 E-value=1.6 Score=49.24 Aligned_cols=287 Identities=10% Similarity=-0.042 Sum_probs=160.6
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhh
Q 035707 357 ELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTM 436 (713)
Q Consensus 357 ~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 436 (713)
+...+|. ...|+.. +++..+...+......++....-+.+.+|.++. |...+++..+...+ ..
T Consensus 378 A~aSLGl--Ih~g~~~-~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~a-------------g~~~~~~~lL~~~L-~~ 440 (963)
T 4ady_A 378 ATASLGV--IHKGNLL-EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYA-------------GFGRDTTDYLKNII-VE 440 (963)
T ss_dssp HHHHHHH--HTSSCTT-THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTT-------------TTTHHHHHHHHHHH-HH
T ss_pred HHHHhhh--hccCchH-HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcC-------------CCcHHHHHHHHHHH-cC
Confidence 3344443 4567777 888877765541113455567788889999882 33346788888777 43
Q ss_pred CC---C---CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCc-hHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 035707 437 RE---R---DP----YIIYHLCLENAEQRKLDVALYYAKKLLNLEARSN-VKGYLLLARVLSAQKQFADAESVINDSLDQ 505 (713)
Q Consensus 437 ~p---~---~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 505 (713)
+. . +. .+...+|.++.-.++ +++.+.+..++..+.... ..+-..+|.++.-.|+-+-...++..+.+.
T Consensus 441 ~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~ 519 (963)
T 4ady_A 441 NSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET 519 (963)
T ss_dssp HSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC
T ss_pred ccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc
Confidence 32 0 11 244567777776666 456666766665332111 135567788888888887777777766654
Q ss_pred cCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCCHH
Q 035707 506 TGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQWR 585 (713)
Q Consensus 506 ~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 585 (713)
.. +...-...+|..+...|+.+.+-...+.+... ++ ......+-..+|..|...|+..
T Consensus 520 ~~--e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~d-------------------p~vRygaa~alglAyaGTGn~~ 577 (963)
T 4ady_A 520 QH--GNITRGLAVGLALINYGRQELADDLITKMLAS-DE-------------------SLLRYGGAFTIALAYAGTGNNS 577 (963)
T ss_dssp SC--HHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SC-------------------HHHHHHHHHHHHHHTTTSCCHH
T ss_pred Cc--HHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CC-------------------HHHHHHHHHHHHHHhcCCCCHH
Confidence 32 23332334444455678877666665554432 11 1112344556788888999976
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--hcCCChHHHHHHHHH
Q 035707 586 DAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQ--IGGESMATIRCFLTD 663 (713)
Q Consensus 586 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~l~~A~~~~~~ 663 (713)
.-...+..+..-..++......+|......|+.+.+...+..... ..++.+.+..+.++.. .|... ++++..+.+
T Consensus 578 aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~-~~aid~L~~ 654 (963)
T 4ady_A 578 AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGL-QSAIDVLDP 654 (963)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCC-HHHHHHHHH
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 555577766653332333333344444455665444444433222 2345555554444443 34444 478888877
Q ss_pred HHhhCCCCH---HHHHHHHHHHHHhCC
Q 035707 664 ALRLDRTNT---TAWYNLGLLYKTYAG 687 (713)
Q Consensus 664 al~~~p~~~---~~~~~lg~~~~~~g~ 687 (713)
... ++++. .+...||.+.....+
T Consensus 655 L~~-D~d~~Vrq~Ai~ALG~Ig~gtnn 680 (963)
T 4ady_A 655 LTK-DPVDFVRQAAMIALSMILIQQTE 680 (963)
T ss_dssp HHT-CSSHHHHHHHHHHHHHHSTTCCT
T ss_pred Hcc-CCCHHHHHHHHHHHHHHhcCCcc
Confidence 753 55433 245556666554443
No 252
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.10 E-value=3.2 Score=43.38 Aligned_cols=90 Identities=13% Similarity=0.027 Sum_probs=68.0
Q ss_pred CCCccHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 035707 562 HDRSLEMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYS-------ASGWHSTGLLYEAKGLQQEALVSFRKALDAEPN 634 (713)
Q Consensus 562 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 634 (713)
.+......+++.+-..|...+.+++|..+..++. .|.+ ...++.+|+++..+++|.+|.+++..|+...|.
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 3445568889999999999999999999999985 4432 345677899999999999999999999998775
Q ss_pred CH-------HHHHHHHHHHHHhcCCC
Q 035707 635 HV-------PSLVSIARVLRQIGGES 653 (713)
Q Consensus 635 ~~-------~~~~~la~~~~~~g~~~ 653 (713)
+. .++-.+..+-.-+|+..
T Consensus 303 ~~~a~gfr~~a~K~lI~V~LLlG~iP 328 (523)
T 4b4t_S 303 NSKSLGFLQQSNKLHCCIQLLMGDIP 328 (523)
T ss_dssp SSSCSHHHHHHHHHHHHHHHHHTCCC
T ss_pred chhhhhHHHHHHHHHHhHHhhcCCCC
Confidence 42 23323333334468765
No 253
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.97 E-value=9.8 Score=39.51 Aligned_cols=183 Identities=16% Similarity=-0.023 Sum_probs=115.7
Q ss_pred CchhHHHHHHHHHHHHHHH-hhcCCCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhh---HHHHHHHhhc---
Q 035707 276 RNNIEEAVLLLLILLKKIV-LGKIEWDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKR---YCTLALCYLG--- 348 (713)
Q Consensus 276 ~~~~eeA~~ll~~~~~~~~-l~~~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~---~~~la~~~~~--- 348 (713)
.+++.+|+..++.+.+... ....++...+...+...+...|+++.+.+++.-+.+....-... ......-|..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 4677888877655544332 23355667777777777788888877777665543321111110 0011111110
Q ss_pred ----------------c-cCC-----CChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhc-cCcchHHHHHHHHHHHH
Q 035707 349 ----------------E-ENS-----DCNLELLVASKICAENKVCIEEGITYARKALSMLQG-KCRQMASIANCLLGVLL 405 (713)
Q Consensus 349 ----------------~-~~p-----~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~lg~~~ 405 (713)
. ..- ........++.++...|++. +|..++......... .+.......+......|
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~-eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKID-EAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHH-HHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHH-HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 0 111 12345678899999999999 999999998753322 22234456666666777
Q ss_pred hhcccccccHHHHHhcHHHHHHHHHHHHHh--hCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 035707 406 SSQSRSVVSDSKRILKQSQALVALETAEKT--MRERDP----YIIYHLCLENAEQRKLDVALYYAKKLLNL 470 (713)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 470 (713)
...+++.+|...+.++... ..+..+ ..+...|..+...++|.+|..+|..++..
T Consensus 188 -----------l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 188 -----------ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp -----------HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred -----------HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 7889999999999887411 223333 35567899999999999999999998864
No 254
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=92.25 E-value=0.48 Score=49.97 Aligned_cols=80 Identities=14% Similarity=0.075 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 035707 604 GWHSTGLLYEAKGLQQEALVSFRKALDAEPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYK 683 (713)
Q Consensus 604 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 683 (713)
.+..+|.+......++.|..+|.+|..+.|++...++.+|.+....|+.- +|+-+|.+++......+.+..+|..++.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l--~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHL--TTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHH--HHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccH--HHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 56778999999999999999999999999999999999999999998875 8999999999887778888888888876
Q ss_pred Hh
Q 035707 684 TY 685 (713)
Q Consensus 684 ~~ 685 (713)
..
T Consensus 232 ~~ 233 (497)
T 1ya0_A 232 KA 233 (497)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 255
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.86 E-value=1.3 Score=45.36 Aligned_cols=112 Identities=12% Similarity=-0.026 Sum_probs=68.1
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHH-HHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC
Q 035707 574 LANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEA-LVSFRKALDAEPNHVPSLVSIARVLRQIGGE 652 (713)
Q Consensus 574 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA-~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 652 (713)
.|......|+.+.|...+++++.+.....-.-. ....+-.+ ...+++. ...+...++..+...|++
T Consensus 121 ~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~-------~~~~w~~~~r~~l~~~------~~~a~~~~~~~~l~~g~~ 187 (388)
T 2ff4_A 121 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDL-------RDFQFVEPFATALVED------KVLAHTAKAEAEIACGRA 187 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG-------TTSTTHHHHHHHHHHH------HHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCC-------CchhHHHHHHHHHHHH------HHHHHHHHHHHHHHCCCH
Confidence 344445678999999999999987643211000 00111111 1111111 122344566667777777
Q ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHc
Q 035707 653 SMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAAL 702 (713)
Q Consensus 653 ~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~ 702 (713)
. +|+..+..++..+|-+..+|..+-.++...|+ ..+|++.|++...
T Consensus 188 ~--~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr--~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 188 S--AVIAELEALTFEHPYREPLWTQLITAYYLSDR--QSDALGAYRRVKT 233 (388)
T ss_dssp H--HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTC--HHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHH
Confidence 5 77777777777777777777777777777777 7777777776544
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.11 E-value=26 Score=41.41 Aligned_cols=199 Identities=11% Similarity=-0.027 Sum_probs=117.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc-C----------------
Q 035707 445 YHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQT-G---------------- 507 (713)
Q Consensus 445 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p---------------- 507 (713)
..+...+...+.++-+.+ .+...|.++ ..-+.+|.++...|++++|..+|+++-..- .
T Consensus 816 ~~l~~~l~~~~~~~~~~~----l~~~~~~~~-~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQ----LIGWLNSDP-IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHH----HHHHSCCCH-HHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHH----HhhhccCCc-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 345555666677665543 334456666 566888888888888888888888763211 0
Q ss_pred ----CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHHHHHHHCCC
Q 035707 508 ----KWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLANVYTSLSQ 583 (713)
Q Consensus 508 ----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 583 (713)
.......|.....++...+.++.+++..+.+++..+.+ +.......|..+-..+...|+
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~-----------------~~~~~~~l~~~iFk~~L~l~~ 953 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETD-----------------DEDLSIAITHETLKTACAAGK 953 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSC-----------------CHHHHHHHHHHHHHHHHHHCC
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCC-----------------ChhhHHHHHHHHHHHHHhhCC
Confidence 00123456677788889999999999999998864321 111124578888889999999
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCH------------HHHHHHHHH-HHhc-CCCC-HHHHHHHHHHHHH
Q 035707 584 WRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQ------------QEALVSFRK-ALDA-EPNH-VPSLVSIARVLRQ 648 (713)
Q Consensus 584 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~------------~eA~~~~~~-al~~-~p~~-~~~~~~la~~~~~ 648 (713)
|++|-..+-..-... .-...+..+....+..|.. ++-...+.. |-.. ++.+ +..+..|=.-+..
T Consensus 954 ye~Ay~aL~~~pd~~-~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~ 1032 (1139)
T 4fhn_B 954 FDAAHVALMVLSTTP-LKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYK 1032 (1139)
T ss_dssp SGGGGHHHHHHHHSS-SCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHH-HHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhc
Confidence 999987775442221 1233444444444444443 332222221 1111 2222 2223323333455
Q ss_pred hcCCChHHHHHHHHHHHhh
Q 035707 649 IGGESMATIRCFLTDALRL 667 (713)
Q Consensus 649 ~g~~~l~~A~~~~~~al~~ 667 (713)
.|++. ..|.-.|+++.++
T Consensus 1033 r~dyR-~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B 1033 HQNYR-DAAAIIYEKLSRY 1050 (1139)
T ss_dssp HHTTS-CHHHHHHHHHHHH
T ss_pred cCChH-HHHHHHHHHHHHh
Confidence 67775 4788888888765
No 257
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.67 E-value=1.3 Score=45.94 Aligned_cols=63 Identities=11% Similarity=-0.088 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CChh----HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 035707 568 METWHDLANVYTSLSQWRDAEVCLSKSKAINP--YSAS----GWHSTGLLYEAKGLQQEALVSFRKALD 630 (713)
Q Consensus 568 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~----~~~~lg~~~~~~g~~~eA~~~~~~al~ 630 (713)
.+.+..+..++...++|..+...+.++..... .++. .....|.++...++|.+|...|-.++.
T Consensus 168 id~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 168 IDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 44444444455555555555555554433211 1111 122234444445555555555555443
No 258
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.60 E-value=1.7 Score=45.16 Aligned_cols=60 Identities=15% Similarity=-0.036 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 035707 443 IIYHLCLENAEQRKLDVALYYAKKLLNLEA--RSNVKGYLLLARVLSAQKQFADAESVINDS 502 (713)
Q Consensus 443 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 502 (713)
++..+|..|.+.|+++.|.+.|.++..... ++..+.+..+.+++...+++..+...+.++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 445555555555555555555555544322 122234444444444444444444444444
No 259
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.97 E-value=0.62 Score=48.71 Aligned_cols=128 Identities=14% Similarity=0.036 Sum_probs=58.9
Q ss_pred HHHHHCCCHHHHHHHHHHHHh-----------cCCCChhHHHHHHHHHHHcCCHHHHH----------HHHHHHHh----
Q 035707 576 NVYTSLSQWRDAEVCLSKSKA-----------INPYSASGWHSTGLLYEAKGLQQEAL----------VSFRKALD---- 630 (713)
Q Consensus 576 ~~~~~~g~~~~A~~~~~~al~-----------~~p~~~~~~~~lg~~~~~~g~~~eA~----------~~~~~al~---- 630 (713)
..+...+++++|..+-...+. +++-.+.+|+..+.++...|+..+.. ..+-.+++
T Consensus 144 i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~l 223 (523)
T 4b4t_S 144 LFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASL 223 (523)
T ss_dssp -----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCS
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhc
Confidence 344567888888887765541 13344667888888888888765532 12222222
Q ss_pred -cCCC-CHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 035707 631 -AEPN-HVPSLVSIARVLRQIGGESMATIRCFLTDALRLDRTN-------TTAWYNLGLLYKTYAGASALEAVECFEAAA 701 (713)
Q Consensus 631 -~~p~-~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~ 701 (713)
.+++ ....++.+-..|...+.++ +|..+..++. .|.+ ...+|.+|.++.-.++ |.+|.+++..|+
T Consensus 224 r~D~~~qa~l~nllLRnYL~~~~y~--qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~--Y~eA~~~L~~A~ 297 (523)
T 4b4t_S 224 KHDNETKAMLINLILRDFLNNGEVD--SASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLD--YSTANEYIIAAI 297 (523)
T ss_dssp CSSSCHHHHHHHHHHHHHHHSSCST--THHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHT
T ss_pred ccCcchhHHHHHHHHHHHHccCcHH--HHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHH
Confidence 2222 2456777888999999998 9999999885 3432 2346678999999999 999999999999
Q ss_pred ccccCCCC
Q 035707 702 LLEESAPV 709 (713)
Q Consensus 702 ~l~p~~~~ 709 (713)
...|.+..
T Consensus 298 rkap~~~~ 305 (523)
T 4b4t_S 298 RKAPHNSK 305 (523)
T ss_dssp SSCSCSSS
T ss_pred HhCCcchh
Confidence 98886653
No 260
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.76 E-value=11 Score=44.66 Aligned_cols=149 Identities=14% Similarity=0.036 Sum_probs=94.9
Q ss_pred HhhcCCCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchh------hHHHHHHHhhcccCCCChHHHHHHHHHHHh
Q 035707 294 VLGKIEWDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKK------RYCTLALCYLGEENSDCNLELLVASKICAE 367 (713)
Q Consensus 294 ~l~~~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~------~~~~la~~~~~~~~p~~~~~~~~~a~~~~~ 367 (713)
.+...++++...+.+|.++..+|++++|.++|+++-.+...... .+..+..... .....+..++....++.+
T Consensus 834 l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~--~~~~l~~YY~hv~~LFe~ 911 (1139)
T 4fhn_B 834 LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH--HQNLLSCYYLHLSKKLFE 911 (1139)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT--SCCSSHHHHHHHHHHHHH
T ss_pred HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc--ccccHHHHHHHHHHHHHH
Confidence 34456788888899999999999999999999998654322211 1111111000 122234566677778888
Q ss_pred cCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 035707 368 NKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHL 447 (713)
Q Consensus 368 ~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~l 447 (713)
.+.++ .++++.+.|++...+++.......|..+=..+ ...++|++|...+...- . .....+.+..+
T Consensus 912 ~~~~~-~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~-----------L~l~~ye~Ay~aL~~~p-d-~~~r~~cLr~L 977 (1139)
T 4fhn_B 912 ESAYI-DALEFSLLADASKETDDEDLSIAITHETLKTA-----------CAAGKFDAAHVALMVLS-T-TPLKKSCLLDF 977 (1139)
T ss_dssp TSCCH-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHH-----------HHHCCSGGGGHHHHHHH-H-SSSCHHHHHHH
T ss_pred cCCHH-HHHHHHHHHHHhccCCChhhHHHHHHHHHHHH-----------HhhCCHHHHHHHHHhCC-C-HHHHHHHHHHH
Confidence 88888 99999999998555555544444555555555 56777788877775443 2 12334556666
Q ss_pred HHHHHHcCCHH
Q 035707 448 CLENAEQRKLD 458 (713)
Q Consensus 448 a~~~~~~g~~~ 458 (713)
....++.|+.+
T Consensus 978 V~~lce~~~~~ 988 (1139)
T 4fhn_B 978 VNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHCCHH
T ss_pred HHHHHhCCChh
Confidence 66666666544
No 261
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=89.17 E-value=10 Score=32.73 Aligned_cols=117 Identities=12% Similarity=0.063 Sum_probs=84.5
Q ss_pred HHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHH
Q 035707 418 RILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAES 497 (713)
Q Consensus 418 ~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~ 497 (713)
+-.+++.++-.-. -+-|..++....++..++-.|.|..++-.+.. .+...+.+.-+.|+...+++..|+.
T Consensus 14 kY~dYdt~~fLsa----~L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~------lNT~Ts~YYk~LCy~klKdYkkA~~ 83 (242)
T 3kae_A 14 RYRDYETAIFLAA----CLLPCKPEYRMLMSIVLYLNGEYTRALFHLHK------LNTCTSKYYESLCYKKKKDYKKAIK 83 (242)
T ss_dssp HTTCHHHHHHHHH----HHC----CTHHHHHHHHHHTTCHHHHHHHHHT------CCBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccccHHHHHHH----HHccCChHHHhhhhhhhhhcchHhHHHHHHHh------cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666543322 23466667778889999999999998876532 3343677888999999999999999
Q ss_pred HHHHHhhc--c--CC-----------CCc-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Q 035707 498 VINDSLDQ--T--GK-----------WDQ-GELLRTKAKLQIAQGRLKNAIETYVNLLAVLQF 544 (713)
Q Consensus 498 ~~~~al~~--~--p~-----------~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 544 (713)
.++..++- + |+ +.+ ...+..+|.++...|+.++|+.+|.......|-
T Consensus 84 ~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~l 146 (242)
T 3kae_A 84 SLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFL 146 (242)
T ss_dssp HHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccc
Confidence 99999933 2 21 122 235678899999999999999999998887653
No 262
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=86.11 E-value=41 Score=36.36 Aligned_cols=201 Identities=7% Similarity=-0.081 Sum_probs=124.4
Q ss_pred HHHhcHHHHHHHHHHHHHhhCCCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCH
Q 035707 417 KRILKQSQALVALETAEKTMRERDPYI----IYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQF 492 (713)
Q Consensus 417 ~~~~~~~~A~~~~~~al~~~~p~~~~~----~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~ 492 (713)
....+.+.|...+.... ...+-+... +..++......+...++...+.+.....++ . .....++......|++
T Consensus 225 lar~d~~~A~~~~~~~~-~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~e~~~r~Alr~~d~ 301 (618)
T 1qsa_A 225 VARQDAENARLMIPSLA-QAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS-T-SLIERRVRMALGTGDR 301 (618)
T ss_dssp HHHHCHHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC-H-HHHHHHHHHHHHHTCH
T ss_pred HHhcCHHHHHHHHHhhh-hccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCC-h-HHHHHHHHHHHHCCCH
Confidence 34457788999988776 443333322 223343444455356777777776543333 3 3344455556678999
Q ss_pred HHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh-----cccCC-Ccc
Q 035707 493 ADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKN-----RQNHD-RSL 566 (713)
Q Consensus 493 ~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~ 566 (713)
+.|..+|+.+-.... ......+.+|+.+...|+.++|...|+++.. +.+.-.+.....+-.. ..... ...
T Consensus 302 ~~a~~~~~~l~~~~~--~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~ 377 (618)
T 1qsa_A 302 RGLNTWLARLPMEAK--EKDEWRYWQADLLLERGREAEAKEILHQLMQ--QRGFYPMVAAQRIGEEYELKIDKAPQNVDS 377 (618)
T ss_dssp HHHHHHHHHSCTTGG--GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSHHHHHHHHHTTCCCCCCCCCCCSCCCC
T ss_pred HHHHHHHHHcccccc--ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--CCChHHHHHHHHcCCCCCCCCCCCChhHHh
Confidence 999999988765433 4577889999999999999999999999875 2211111111111100 00000 000
Q ss_pred --HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 035707 567 --EMETWHDLANVYTSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFR 626 (713)
Q Consensus 567 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~ 626 (713)
....-...+..+...|....|...+....... ++.-...++.+....|.++.++....
T Consensus 378 ~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 378 ALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp HHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 11223456777889999999999888877642 34455677888888888888776544
No 263
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=80.64 E-value=0.0054 Score=62.75 Aligned_cols=263 Identities=13% Similarity=0.126 Sum_probs=165.6
Q ss_pred CcccccccccccCCchhHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHH
Q 035707 263 PNLRLQMELSFVPRNNIEEAVLLLLILLKKIVLGKIEWDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTL 342 (713)
Q Consensus 263 ~~~~~~~~~~~~~~~~~eeA~~ll~~~~~~~~l~~~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~l 342 (713)
|.+-++++......+.+.+||..+. -..||+.+..+..+-.+.|+++.+..++..+-+. ..++..-..+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyI----------kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteL 122 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYI----------KADDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETEL 122 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSC----------CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHH----------hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHH
Confidence 3333444444444555556654320 1236677777777888888999888888877554 3333444566
Q ss_pred HHHhhcc----------cCCCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhccccc
Q 035707 343 ALCYLGE----------ENSDCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLLSSQSRSV 412 (713)
Q Consensus 343 a~~~~~~----------~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~ 412 (713)
+.||.+. ..|+ ..-.-..|.-|+..|.|. .|.-+|..+ ++ +..|+.++
T Consensus 123 i~ayAk~~rL~elEefl~~~N-~A~iq~VGDrcf~e~lYe-AAKilys~i-----sN--------~akLAstL------- 180 (624)
T 3lvg_A 123 IFALAKTNRLAELEEFINGPN-NAHIQQVGDRCYDEKMYD-AAKLLYNNV-----SN--------FGRLASTL------- 180 (624)
T ss_dssp HHHHHTSCSSSTTTSTTSCCS-SSCTHHHHHHHHHSCCST-TSSTTGGGS-----CC--------CTTTSSSS-------
T ss_pred HHHHHhhCcHHHHHHHHcCCC-cccHHHHHHHHHHccCHH-HHHHHHHhC-----cc--------HHHHHHHH-------
Confidence 6666665 2333 333456788899999998 776665332 11 22356666
Q ss_pred ccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCH
Q 035707 413 VSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQF 492 (713)
Q Consensus 413 ~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~ 492 (713)
...|++..|++.-++| +++.+|-....++...+.+.-|.-+--.++- .|+.. -.+...|...|.|
T Consensus 181 ----V~L~~yq~AVdaArKA------ns~ktWKeV~~ACvd~~EfrLAqicGLniIv-hadeL----~elv~~YE~~G~f 245 (624)
T 3lvg_A 181 ----VHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-HADEL----EELINYYQDRGYF 245 (624)
T ss_dssp ----SSCSGGGSSTTTTTTC------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-CSSCC----SGGGSSSSTTCCC
T ss_pred ----HHHHHHHHHHHHHHhc------CChhHHHHHHHHHhCchHHHHHHHhcchhcc-cHHHH----HHHHHHHHhCCCH
Confidence 5567777777765543 5777899999999999999888766555543 33322 2344567788999
Q ss_pred HHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHH
Q 035707 493 ADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWH 572 (713)
Q Consensus 493 ~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (713)
++-+..++.++.+.. .+.-.+..+|.+|.+- ++++-.++++..... ..+.+- -..-.....|.
T Consensus 246 ~ELIsLlEaglglEr--AHmGmFTELaILYsKY-~PeKlmEHlklf~sr-----------iNipKv---iracE~ahLW~ 308 (624)
T 3lvg_A 246 EELITMLEAALGLER--AHMGMFTELAILYSKF-KPQKMREHLELFWSR-----------VNIPKV---LRAAEQAHLWA 308 (624)
T ss_dssp TTSTTTHHHHTTSTT--CCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSS-----------SCCTTT---HHHHTTTTCHH
T ss_pred HHHHHHHHHHhCCCc--hhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh-----------ccHHHH---HHHHHHHhhHH
Confidence 999999999998765 5777888888887654 455555554431110 000000 00012256788
Q ss_pred HHHHHHHHCCCHHHHHHH
Q 035707 573 DLANVYTSLSQWRDAEVC 590 (713)
Q Consensus 573 ~la~~~~~~g~~~~A~~~ 590 (713)
.+..+|..-.+|+.|...
T Consensus 309 ElvfLY~~ydE~DnA~lt 326 (624)
T 3lvg_A 309 ELVFLYDKYEEYDNAIIT 326 (624)
T ss_dssp HHHHHHHHHTCHHHHHHT
T ss_pred HHHHHHhcchhHHHHHHH
Confidence 999999999999987643
No 264
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=74.14 E-value=0.0011 Score=67.81 Aligned_cols=167 Identities=11% Similarity=0.054 Sum_probs=89.2
Q ss_pred CcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhhHHHHHHHhhcccCCCChHHHHHHHHHHHhcCCChHHHHHHH
Q 035707 300 WDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKRYCTLALCYLGEENSDCNLELLVASKICAENKVCIEEGITYA 379 (713)
Q Consensus 300 ~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~~A~~~~ 379 (713)
+.|.+|..||.++...|+..+|++.|-++ .+|.+ +.....++.+.|.++ +=+.++
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA---------------------~Dps~---y~eVi~~A~~~~~~e-dLv~yL 106 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA---------------------DDPSS---YMEVVQAANTSGNWE-ELVKYL 106 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC---------------------SCCCS---SSHHHHHTTTSSCCT-THHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC---------------------CChHH---HHHHHHHHHhCCCHH-HHHHHH
Confidence 46677777777777776655554433222 34444 344445667889999 888888
Q ss_pred HHHHHhhhccCcchHHHHHHHHHHHHhhcccccccHHHHHhcHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 035707 380 RKALSMLQGKCRQMASIANCLLGVLLSSQSRSVVSDSKRILKQSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDV 459 (713)
Q Consensus 380 ~~al~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~ 459 (713)
+-+-+. ...+ ..-..|..+|.+.++.... +..+ ..|+. .-.-..|.-++..|.|+.
T Consensus 107 ~MaRk~--~ke~----~IDteLi~ayAk~~rL~el---------------Eefl--~~~N~-A~iq~VGDrcf~e~lYeA 162 (624)
T 3lvg_A 107 QMARKK--ARES----YVETELIFALAKTNRLAEL---------------EEFI--NGPNN-AHIQQVGDRCYDEKMYDA 162 (624)
T ss_dssp HTTSTT--CCST----TTTHHHHHHHHTSCSSSTT---------------TSTT--SCCSS-SCTHHHHHHHHHSCCSTT
T ss_pred HHHHHH--hccc----ccHHHHHHHHHhhCcHHHH---------------HHHH--cCCCc-ccHHHHHHHHHHccCHHH
Confidence 777652 3333 4444566677444443211 1111 11222 223456666777777776
Q ss_pred HHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHH
Q 035707 460 ALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNA 531 (713)
Q Consensus 460 A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A 531 (713)
|.-.|..+ .-|..|+.++..+|+|..|.+.-++| .++.+|......+...+++.-|
T Consensus 163 AKilys~i---------sN~akLAstLV~L~~yq~AVdaArKA-------ns~ktWKeV~~ACvd~~EfrLA 218 (624)
T 3lvg_A 163 AKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLA 218 (624)
T ss_dssp SSTTGGGS---------CCCTTTSSSSSSCSGGGSSTTTTTTC-------CSSCSHHHHTHHHHHSCTTTTT
T ss_pred HHHHHHhC---------ccHHHHHHHHHHHHHHHHHHHHHHhc-------CChhHHHHHHHHHhCchHHHHH
Confidence 65554322 22334555666666666665554443 2333455555555555555444
No 265
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=73.14 E-value=46 Score=32.27 Aligned_cols=28 Identities=7% Similarity=-0.040 Sum_probs=23.6
Q ss_pred HHHhhhhhhccCchHHHHHHHHHHHHHH
Q 035707 154 IFLKTKSLQGLGRFEEACQSCKVILDTV 181 (713)
Q Consensus 154 ~~~~~~~~~~~g~~~eA~~~~~~~l~~~ 181 (713)
-...|+-+...|+|+||+..|+.++..+
T Consensus 117 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i 144 (325)
T 3mv2_A 117 KMNEGYKNFKLNKPDIAIECFREAIYRI 144 (325)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 4567899999999999999999777544
No 266
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=69.33 E-value=89 Score=30.59 Aligned_cols=99 Identities=12% Similarity=0.045 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 035707 422 QSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVIND 501 (713)
Q Consensus 422 ~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 501 (713)
.++|+.+-.+.- ...-.++..+..+|..|.+.+++.+|..+|- + .++. .-..++.++.. ++.
T Consensus 118 i~~ai~WS~~~g-~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l---g~~~--s~~~~a~mL~e---------w~~- 179 (336)
T 3lpz_A 118 VKEMIDWSKKFG-DYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L---GTKE--SPEVLARMEYE---------WYK- 179 (336)
T ss_dssp HHHHHHHHHHHS-SCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T---SCTT--HHHHHHHHHHH---------HHH-
T ss_pred HHHHHHHHhhcC-CCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h---cCCc--hHHHHHHHHHH---------HHH-
Confidence 356666555422 2234689999999999999999999988873 1 1221 11122222211 111
Q ss_pred HhhccCCCCcHHHHHH-HHHHHHHhCCHHHHHHHHHHHHHHH
Q 035707 502 SLDQTGKWDQGELLRT-KAKLQIAQGRLKNAIETYVNLLAVL 542 (713)
Q Consensus 502 al~~~p~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~~l~~~ 542 (713)
+..| .....+.. ....|...++...|...++...+..
T Consensus 180 --~~~~--~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l 217 (336)
T 3lpz_A 180 --QDES--HTAPLYCARAVLPYLLVANVRAANTAYRIFTSAL 217 (336)
T ss_dssp --TSCG--GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --hcCC--ccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 1112 33444433 3445678899999999887776653
No 267
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=66.38 E-value=98 Score=29.99 Aligned_cols=65 Identities=9% Similarity=-0.032 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHHHhcCCChHHHHHHHHHH---------------H-h---hCCCCHHHHHHHHH-HHHHhCCCCHHHH
Q 035707 634 NHVPSLVSIARVLRQIGGESMATIRCFLTDA---------------L-R---LDRTNTTAWYNLGL-LYKTYAGASALEA 693 (713)
Q Consensus 634 ~~~~~~~~la~~~~~~g~~~l~~A~~~~~~a---------------l-~---~~p~~~~~~~~lg~-~~~~~g~~~~~~A 693 (713)
.++..+..+|..|.+.|++. +|..+|--. . + -.|.....+...+. .|...|+ ...|
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~--~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n--~~~A 207 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVY--EAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISN--ISFA 207 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHH--HHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTB--HHHH
T ss_pred CCHHHHHHHHHHHhhcCCHH--HHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcC--HHHH
Confidence 45666666666666666664 566554211 0 1 11222333333333 4667889 9999
Q ss_pred HHHHHHHHc
Q 035707 694 VECFEAAAL 702 (713)
Q Consensus 694 ~~~~~~a~~ 702 (713)
...|....+
T Consensus 208 ~~~~~~f~~ 216 (312)
T 2wpv_A 208 HESKDIFLE 216 (312)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988886654
No 268
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=61.32 E-value=35 Score=39.34 Aligned_cols=107 Identities=10% Similarity=0.006 Sum_probs=70.9
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhcCcHHHHHHHHHhhCCCCCCchhh---HHHHHHHhhcccCCC--ChHHHHHHHHHHHh
Q 035707 293 IVLGKIEWDPSIIDHLSFALSVSGELWTLAHQVEELLPGVMGNKKR---YCTLALCYLGEENSD--CNLELLVASKICAE 367 (713)
Q Consensus 293 ~~l~~~~~~~~~~~~l~~a~~~~g~~~~a~~~~e~~l~~~~~~~~~---~~~la~~~~~~~~p~--~~~~~~~~a~~~~~ 367 (713)
..+...|+++...+.+|.+|..+|++++|..+|+++-.+....... ........ ....++ ....++....++..
T Consensus 831 eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll-~~~e~~~~~~~YY~hV~~LFE~ 909 (950)
T 4gq2_M 831 QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIA-EKYHHQNLLSCYYLHLSKKLFE 909 (950)
T ss_dssp HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHH-HHTTTCSHHHHHHHHHHHHHHH
T ss_pred HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhcc-CcccccchhHHHHHHHHHHHHh
Confidence 4566788899999999999999999999999999987654322111 00111111 011122 23466677788888
Q ss_pred cCCChHHHHHHHHHHHHhhhccCcchHHHHHHHH
Q 035707 368 NKVCIEEGITYARKALSMLQGKCRQMASIANCLL 401 (713)
Q Consensus 368 ~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~l 401 (713)
.+-+. .++.+.+.||+...++++......+..+
T Consensus 910 ~~a~~-~vi~fA~lAI~~~~~dd~~l~~~l~~r~ 942 (950)
T 4gq2_M 910 ESAYI-DALEFSLLADASKETDDEDLSIAITHET 942 (950)
T ss_dssp TTCHH-HHHHHHHHHHHTCCSCCHHHHHHHHHHH
T ss_pred cCCHH-HHHHHHHHHHhhcccCCccchHHHHHHH
Confidence 88888 9999999999866666664444444433
No 269
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=59.21 E-value=21 Score=34.57 Aligned_cols=28 Identities=32% Similarity=0.426 Sum_probs=24.5
Q ss_pred HHHhhhhhhccCchHHHHHHHHHHHHHH
Q 035707 154 IFLKTKSLQGLGRFEEACQSCKVILDTV 181 (713)
Q Consensus 154 ~~~~~~~~~~~g~~~eA~~~~~~~l~~~ 181 (713)
-...|+-+...|+|+||+..|+.++..+
T Consensus 105 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i 132 (320)
T 3mkr_B 105 RLQLCYQLTTVGKFEEAVEKFRSILLSV 132 (320)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 4566899999999999999999998865
No 270
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=54.89 E-value=1.2e+02 Score=34.85 Aligned_cols=91 Identities=11% Similarity=-0.031 Sum_probs=63.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc--C----------------
Q 035707 446 HLCLENAEQRKLDVALYYAKKLLNLEARSNVKGYLLLARVLSAQKQFADAESVINDSLDQT--G---------------- 507 (713)
Q Consensus 446 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p---------------- 507 (713)
.+...+...|.++-|. ..+..-|.++ ..-+.+|.++...|++++|..+|+++-.-- +
T Consensus 815 ~l~~~L~~~~~~~~a~----eL~~~~~~t~-~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACM----QLIGWLNSDP-IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHHTTCHHHHH----HHGGGCCSSH-HHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHHhcHHHHHH----HHHhhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 3556667777776543 3455667766 566788999999999999999888764211 0
Q ss_pred ---CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 035707 508 ---KWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAV 541 (713)
Q Consensus 508 ---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 541 (713)
.......|...+.++...+-++-+++..+.+++.
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 0011235667788888999999999999998875
No 271
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=52.97 E-value=61 Score=27.04 Aligned_cols=51 Identities=16% Similarity=-0.050 Sum_probs=24.0
Q ss_pred HHCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 035707 579 TSLSQWRDAEVCLSKSKAINPYSASGWHSTGLLYEAKGLQQEALVSFRKAL 629 (713)
Q Consensus 579 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 629 (713)
...|+-++-.+.+...+.-.+-++..+..+|.+|.+.|+..+|-+.+.+|-
T Consensus 102 v~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC 152 (172)
T 1wy6_A 102 VIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEAC 152 (172)
T ss_dssp HHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 344444444444444433334445555555555555555555555555443
No 272
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=48.16 E-value=36 Score=25.86 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=28.5
Q ss_pred HHHHHHHhhhhhhccCchHHHHHHHHHHHHHHHHhc
Q 035707 150 LVEAIFLKTKSLQGLGRFEEACQSCKVILDTVEHAL 185 (713)
Q Consensus 150 ~~e~~~~~~~~~~~~g~~~eA~~~~~~~l~~~~~~~ 185 (713)
.+-.+-.++..+.+.|+|++|+...+++.+....+.
T Consensus 14 ~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eAm 49 (97)
T 2crb_A 14 LAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAM 49 (97)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 344556788999999999999999998887665554
No 273
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=45.83 E-value=2.2e+02 Score=27.75 Aligned_cols=135 Identities=18% Similarity=0.108 Sum_probs=74.5
Q ss_pred CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcccCCCccHHHHHHHHH-HHHHHCCCHHHHH
Q 035707 510 DQGELLRTKAKLQIAQGRLKNAIETYVNLLAVLQFRKKSFSAGKNLVKNRQNHDRSLEMETWHDLA-NVYTSLSQWRDAE 588 (713)
Q Consensus 510 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~ 588 (713)
.++.++..+|..+...+++.+|..+|- +..++. .+.+.. +.........+.+...+...+ ..|...++...|.
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg~~~s-~~~~a~---mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~ 207 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV--LGTKES-PEVLAR---MEYEWYKQDESHTAPLYCARAVLPYLLVANVRAAN 207 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT--TSCTTH-HHHHHH---HHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH--hcCCch-HHHHHH---HHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHH
Confidence 678899999999999999999888773 111110 001100 000111112244455555544 4567889999988
Q ss_pred HHHHHHHh----cCC------------------CChhH-HHHHHHHHHHcCC---HHHHHHHHHHHHhcCC-CCHHHHHH
Q 035707 589 VCLSKSKA----INP------------------YSASG-WHSTGLLYEAKGL---QQEALVSFRKALDAEP-NHVPSLVS 641 (713)
Q Consensus 589 ~~~~~al~----~~p------------------~~~~~-~~~lg~~~~~~g~---~~eA~~~~~~al~~~p-~~~~~~~~ 641 (713)
.+++...+ .+| ..+.. +..+..+-+..+. +..-.+.|+..++.+| .....+..
T Consensus 208 ~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q~~~~~lF~~L~~~Y~~~l~rd~~~~~~~L~~ 287 (336)
T 3lpz_A 208 TAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGSPDLFRQLKSKYEANLNELNGIWDTALEL 287 (336)
T ss_dssp HHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHHSCCHHHHHHHHHHTHHHHHTTTTTTHHHHHH
T ss_pred HHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 86655443 122 22221 2222233344553 3344455666666676 66777777
Q ss_pred HHHHHHHhc
Q 035707 642 IARVLRQIG 650 (713)
Q Consensus 642 la~~~~~~g 650 (713)
+|.+|+...
T Consensus 288 IG~~YFgi~ 296 (336)
T 3lpz_A 288 IAEMYFGIQ 296 (336)
T ss_dssp HHHHHHCCC
T ss_pred HHHHHcCCC
Confidence 888877653
No 274
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=40.30 E-value=3.9e+02 Score=28.96 Aligned_cols=40 Identities=8% Similarity=-0.092 Sum_probs=24.9
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 035707 426 LVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKL 467 (713)
Q Consensus 426 ~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 467 (713)
+.-+++.+.+..|..... ..-.++.-.|+|+.|+.++-+.
T Consensus 281 L~~LQ~~I~~yGe~~F~~--lYf~vLlLtgqFE~AI~~L~~~ 320 (661)
T 2qx5_A 281 LEDFQNIIISYGPSRFSN--YYLQTLLLSGLYGLAIDYTYTF 320 (661)
T ss_dssp HHHHHHHHHHHCGGGGTT--CHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhhhhhh--HHHHHHHHHhhHHHHHHHHHhc
Confidence 455555552344443332 3556677789999999987755
No 275
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=39.81 E-value=69 Score=23.25 Aligned_cols=30 Identities=10% Similarity=0.082 Sum_probs=20.8
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Q 035707 572 HDLANVYTSLSQWRDAEVCLSKSKAINPYS 601 (713)
Q Consensus 572 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 601 (713)
..+|..+...|++++|..+|-+|+...|.-
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 356777777777777777777777776644
No 276
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=37.73 E-value=1.6e+02 Score=25.28 Aligned_cols=47 Identities=19% Similarity=0.253 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHHhhccC
Q 035707 460 ALYYAKKLLNLEAR--SNVKGYLLLARVLSAQKQFADAESVINDSLDQTG 507 (713)
Q Consensus 460 A~~~~~~~l~~~p~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 507 (713)
+.++|..+....-+ .+ ..|...|..+...|++.+|..+|+.+++...
T Consensus 79 p~~if~~L~~~~IG~~~A-lfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLA-QFYISWAEEYEARENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp HHHHHHHHHHTTSSTTBH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCcchhhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 44455554443322 22 4455556666666666666666666666543
No 277
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=36.69 E-value=3e+02 Score=26.56 Aligned_cols=27 Identities=11% Similarity=-0.095 Sum_probs=21.9
Q ss_pred CChHHHHHHHHHHHhcCCChHHHHHHHH
Q 035707 353 DCNLELLVASKICAENKVCIEEGITYAR 380 (713)
Q Consensus 353 ~~~~~~~~~a~~~~~~g~~~~~A~~~~~ 380 (713)
.++..+..+|..+.+.+++. +|..+|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~-~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVY-EAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHH-HHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHH-HHHHHHH
Confidence 47888888898888888888 8877763
No 278
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=35.62 E-value=96 Score=22.50 Aligned_cols=32 Identities=13% Similarity=0.031 Sum_probs=23.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 035707 606 HSTGLLYEAKGLQQEALVSFRKALDAEPNHVP 637 (713)
Q Consensus 606 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~ 637 (713)
..+|..+...|++++|..+|-+|+...|.-..
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 34677777888888888888888887776443
No 279
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=35.19 E-value=2.4e+02 Score=25.11 Aligned_cols=80 Identities=9% Similarity=-0.044 Sum_probs=59.3
Q ss_pred HHHHHHHhhhcCC------c--hHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhCCHHHHHH
Q 035707 462 YYAKKLLNLEARS------N--VKGYLLLARVLSAQKQFADAESVINDSLDQTGKWDQGELLRTKAKLQIAQGRLKNAIE 533 (713)
Q Consensus 462 ~~~~~~l~~~p~~------~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~ 533 (713)
..+++++....++ + ...|...+..+ ..+...++..+|..+....-.......|...|..+...|++.+|.+
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5677777643222 1 14666666654 2444778999999888776444678889999999999999999999
Q ss_pred HHHHHHHHH
Q 035707 534 TYVNLLAVL 542 (713)
Q Consensus 534 ~~~~~l~~~ 542 (713)
+|+..++..
T Consensus 137 Vy~~GI~~~ 145 (202)
T 3esl_A 137 LLELGAENN 145 (202)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 999998863
No 280
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=35.08 E-value=89 Score=28.07 Aligned_cols=35 Identities=14% Similarity=-0.004 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCc
Q 035707 441 PYIIYHLCLENAEQRKLDVALYYAKKLLNLEARSN 475 (713)
Q Consensus 441 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 475 (713)
....|.+|..++.+++|.+|.+.+..++...|...
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 34667888888888888888888888888877654
No 281
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=35.04 E-value=1.9e+02 Score=24.71 Aligned_cols=63 Identities=10% Similarity=0.103 Sum_probs=44.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhccCCCC-cHH-----HH-HHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 035707 480 LLLARVLSAQKQFADAESVINDSLDQTGKWD-QGE-----LL-RTKAKLQIAQGRLKNAIETYVNLLAVL 542 (713)
Q Consensus 480 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~-----~~-~~la~~~~~~g~~~~A~~~~~~~l~~~ 542 (713)
+.-+..++..|+|=+|-++++.+....+.++ ... +. ...|..+...|+..-|...+.+++...
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L 105 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYF 105 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4456667777899999999988887765321 122 22 334445677899999999999998864
No 282
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=32.26 E-value=61 Score=24.61 Aligned_cols=26 Identities=15% Similarity=0.014 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHc
Q 035707 675 WYNLGLLYKTYAGASALEAVECFEAAAL 702 (713)
Q Consensus 675 ~~~lg~~~~~~g~~~~~~A~~~~~~a~~ 702 (713)
+-..+..+...|+ |++|++|.++|..
T Consensus 18 ~~RrAe~ll~~gk--ydeAIech~kAa~ 43 (97)
T 2crb_A 18 QSRRADRLLAAGK--YEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHTTC--HHHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCC--HHHHHHHHHHHHH
Confidence 3446677777777 7777777776653
No 283
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=32.18 E-value=3.7e+02 Score=27.50 Aligned_cols=66 Identities=14% Similarity=0.077 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--C--------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCC
Q 035707 570 TWHDLANVYTSLSQWRDAEVCLSKSKAINP--Y--------SASGWHSTGLLYEAKGLQQEALVSFRKALDA-EPNH 635 (713)
Q Consensus 570 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~--------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-~p~~ 635 (713)
....+-.+|++.++..-+...++..-...+ . -....+.+|.++...++|.+|.+.+..|+.. .|..
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 344566889999999999888875543322 1 1345788999999999999999999999998 6654
No 284
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=29.66 E-value=74 Score=32.77 Aligned_cols=61 Identities=8% Similarity=0.032 Sum_probs=35.0
Q ss_pred HHHHHcCCHHHHHHHHHHHhh--------ccCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-Hhh
Q 035707 484 RVLSAQKQFADAESVINDSLD--------QTGKWDQGELLRTKAKLQIAQGRLKNAIETYVNLLAV-LQF 544 (713)
Q Consensus 484 ~~~~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~ 544 (713)
.+|++.++..-+..+++..-. ..|.......++.+|+++..+++|.+|.+.+..++.. .|.
T Consensus 184 kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 184 NIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp HHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc
Confidence 455555555555555443211 1122223445667777777777777777777777776 653
No 285
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=29.10 E-value=1.6e+02 Score=28.90 Aligned_cols=64 Identities=14% Similarity=0.008 Sum_probs=33.5
Q ss_pred ChhHHHHHHHHHHHcCCH--HHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 035707 601 SASGWHSTGLLYEAKGLQ--QEALVSFRKALDA-----EPNHVPSLVSIARVLRQIGGESMATIRCFLTDALR 666 (713)
Q Consensus 601 ~~~~~~~lg~~~~~~g~~--~eA~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~ 666 (713)
.|.++.+||.+-...--. ..++..|.+++.. ...++.-+..+|-.+++.+++. +|+..+.++-.
T Consensus 254 YPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~r--eAl~~WA~Aa~ 324 (472)
T 3re2_A 254 YPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYY--EAIASWVDAGY 324 (472)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHH--HHHHHHHHHHH
T ss_pred CchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHH--HHHHHHHHHHH
Confidence 455666666655433221 2256666666542 2344555555666666666654 56555555444
No 286
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=28.70 E-value=1.6e+02 Score=22.16 Aligned_cols=50 Identities=20% Similarity=0.144 Sum_probs=38.0
Q ss_pred CChHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHH
Q 035707 353 DCNLELLVASKICAENKVCIEEGITYARKALSMLQGKCRQMASIANCLLGVLL 405 (713)
Q Consensus 353 ~~~~~~~~~a~~~~~~g~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 405 (713)
++...++.-|+-+++.+++. +|..+|+++.. ...++.+.-.+-+.++.|-
T Consensus 51 ~~~r~~i~eak~~y~~~ny~-ea~~l~~k~~n--~ten~~i~ki~~fyl~ec~ 100 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYG-EALVFFEKALN--LSDNEEIKKIASFYLEECR 100 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHH--HCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchh-HHHHHHHHHHc--cccCHHHHHHHHHHHHHHH
Confidence 34567777888999999999 99999999986 4555545445557777765
No 287
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=28.30 E-value=63 Score=24.15 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=17.2
Q ss_pred HHhcCChhHHHHHHHHHhcc
Q 035707 214 YKLAGDPDETILSYRRALLY 233 (713)
Q Consensus 214 ~~~~g~~~eA~~~~~~al~~ 233 (713)
.-+.|++++|+..|..++..
T Consensus 29 ~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 29 ADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHH
Confidence 56789999999999999764
No 288
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=27.93 E-value=1.3e+02 Score=22.37 Aligned_cols=32 Identities=16% Similarity=0.051 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 035707 422 QSQALVALETAEKTMRERDPYIIYHLCLENAEQRKLDVALYYAKKLLN 469 (713)
Q Consensus 422 ~~~A~~~~~~al~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 469 (713)
.++|+.+..+|+ . .-+.|++++|+.+|..+++
T Consensus 16 ~~~Ai~lv~~Av-e---------------~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 16 EEMARKYAINAV-K---------------ADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHH-H---------------HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-H---------------HHHhccHHHHHHHHHHHHH
Confidence 356666666666 3 3456777777776666554
No 289
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=27.46 E-value=2.7e+02 Score=23.25 Aligned_cols=117 Identities=7% Similarity=0.018 Sum_probs=73.3
Q ss_pred HHHCCCHHHHHHHHHHHHhcCCCChhHHHH------------------HHHHH--HHcCCHHHHHHHHHHHHhcCCCCHH
Q 035707 578 YTSLSQWRDAEVCLSKSKAINPYSASGWHS------------------TGLLY--EAKGLQQEALVSFRKALDAEPNHVP 637 (713)
Q Consensus 578 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~------------------lg~~~--~~~g~~~eA~~~~~~al~~~p~~~~ 637 (713)
..-.|..++..+...+...-.+-+..-|+- +|..+ ...|+...-+.+|-+. +. +.+
T Consensus 17 ~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~---n~-~se 92 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVIN---NT-LNE 92 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHT---TC-CCH
T ss_pred HHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHh---cc-hHH
Confidence 345788888888888887766543332321 11111 1234555555555432 11 122
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHc
Q 035707 638 SLVSIARVLRQIGGESMATIRCFLTDALRLDRTNTTAWYNLGLLYKTYAGASALEAVECFEAAAL 702 (713)
Q Consensus 638 ~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~~~A~~~~~~a~~ 702 (713)
....--..+..+|+.| +-.+.+...+...+-+|+.++.+|.+|.+.|+ ..+|.+.+.+|-+
T Consensus 93 ~vd~ALd~lv~~~KkD--qLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~--~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 93 HVNKALDILVIQGKRD--KLEEIGREILKNNEVSASILVAIANALRRVGD--ERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHHHHHHTTCHH--HHHHHHHHHC--CCSCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHh--HHHHHHHHHhccCCCChHHHHHHHHHHHHhcc--hhhHHHHHHHHHH
Confidence 2222224556677765 66667766666677789999999999999999 9999999998865
No 290
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=27.26 E-value=67 Score=23.99 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=16.9
Q ss_pred HHhcCChhHHHHHHHHHhcc
Q 035707 214 YKLAGDPDETILSYRRALLY 233 (713)
Q Consensus 214 ~~~~g~~~eA~~~~~~al~~ 233 (713)
.-+.|++++|+..|..++..
T Consensus 21 ~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 21 ADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHH
Confidence 46789999999999999764
No 291
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=26.07 E-value=1.3e+02 Score=22.38 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=10.6
Q ss_pred HHcCCHHHHHHHHHHHHh
Q 035707 452 AEQRKLDVALYYAKKLLN 469 (713)
Q Consensus 452 ~~~g~~~~A~~~~~~~l~ 469 (713)
-+.|++++|+.+|..+++
T Consensus 22 D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 22 DKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 356666666666655543
No 292
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=25.60 E-value=58 Score=24.02 Aligned_cols=27 Identities=26% Similarity=0.239 Sum_probs=21.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 035707 444 IYHLCLENAEQRKLDVALYYAKKLLNL 470 (713)
Q Consensus 444 ~~~la~~~~~~g~~~~A~~~~~~~l~~ 470 (713)
...+|.-|...|+|+.|+.+|+.+++.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 356788888889999988888887753
No 293
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=25.18 E-value=70 Score=24.59 Aligned_cols=29 Identities=14% Similarity=0.050 Sum_probs=19.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHccccC
Q 035707 676 YNLGLLYKTYAGASALEAVECFEAAALLEES 706 (713)
Q Consensus 676 ~~lg~~~~~~g~~~~~~A~~~~~~a~~l~p~ 706 (713)
..+|..+...|+ ++.|+.+|-+|+...|+
T Consensus 24 V~lGE~L~~~g~--~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGD--YEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTC--HHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCC--HHHHHHHHHHHHHHcCC
Confidence 346777777777 77777777777766553
No 294
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=25.06 E-value=3.2e+02 Score=23.31 Aligned_cols=61 Identities=7% Similarity=-0.091 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---hhHH------HHHHHHHHHcCCHHHHHHHHHHHHh
Q 035707 570 TWHDLANVYTSLSQWRDAEVCLSKSKAINPYS---ASGW------HSTGLLYEAKGLQQEALVSFRKALD 630 (713)
Q Consensus 570 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~------~~lg~~~~~~g~~~eA~~~~~~al~ 630 (713)
--+.-+..++..|+|-+|-++++.+-...+.. ...| ...|..+...|+..-|...+.+++.
T Consensus 34 ~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 34 RAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33456667777899999999999998776543 2222 2334455678999999999999876
No 295
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=24.81 E-value=79 Score=23.81 Aligned_cols=30 Identities=17% Similarity=0.287 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHhHHHHHhcCChhHHHHHHHHHhc
Q 035707 198 KLQETLNKAVELLPELYKLAGDPDETILSYRRALL 232 (713)
Q Consensus 198 ~~~~~~~~a~~~l~~~~~~~g~~~eA~~~~~~al~ 232 (713)
+...++..|++ .-..|++++|+..|..++.
T Consensus 15 ~A~~lv~~Ave-----~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 15 AAATVLKRAVE-----LDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHH-----HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHcCCHHHHHHHHHHHHH
No 296
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=23.16 E-value=2.2e+02 Score=28.53 Aligned_cols=65 Identities=11% Similarity=0.065 Sum_probs=33.1
Q ss_pred ChhHHHHHHHHHHHcCC--HHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 035707 601 SASGWHSTGLLYEAKGL--QQEALVSFRKALDA-----EPNHVPSLVSIARVLRQIGGESMATIRCFLTDALRL 667 (713)
Q Consensus 601 ~~~~~~~lg~~~~~~g~--~~eA~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~ 667 (713)
.|.++.+||.+-...-. ...++..|++++.. ...+...|..+|-.+.+.+++. +|+..+.++-..
T Consensus 261 YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~--eAl~~wa~aa~V 332 (489)
T 4gq4_A 261 YPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVR--EALQAWADTATV 332 (489)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHH--HHHHHHHHHHHH
T ss_pred cchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHH--HHHHHhhhhhhh
Confidence 45566666666543221 12355566665542 2334455555555555555554 555555555443
No 297
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=23.04 E-value=2.3e+02 Score=28.44 Aligned_cols=64 Identities=11% Similarity=0.048 Sum_probs=34.4
Q ss_pred ChhHHHHHHHHHHHcCCH--HHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 035707 601 SASGWHSTGLLYEAKGLQ--QEALVSFRKALDA-----EPNHVPSLVSIARVLRQIGGESMATIRCFLTDALR 666 (713)
Q Consensus 601 ~~~~~~~lg~~~~~~g~~--~eA~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~ 666 (713)
.|.++.+||.+-...--. ..++..|.+++.. ...++.-+..+|-.+++.+++. +|+..+..+-.
T Consensus 276 YPmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~r--eAl~~WA~Aa~ 346 (550)
T 3u84_A 276 YPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVR--EALQAWADTAT 346 (550)
T ss_dssp CHHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHH--HHHHHHHHHHH
T ss_pred CchhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHH--HHHHHHHHHHH
Confidence 456666666665433211 1356666666542 2344555556666666666654 66655555444
No 298
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=22.96 E-value=1.2e+02 Score=23.36 Aligned_cols=29 Identities=10% Similarity=0.019 Sum_probs=21.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Q 035707 445 YHLCLENAEQRKLDVALYYAKKLLNLEAR 473 (713)
Q Consensus 445 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 473 (713)
..+|..+...|+++.|+.+|-+++...|.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 35777777888888888888777777665
No 299
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=22.78 E-value=1.7e+02 Score=26.08 Aligned_cols=35 Identities=17% Similarity=-0.060 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh
Q 035707 568 METWHDLANVYTSLSQWRDAEVCLSKSKAINPYSA 602 (713)
Q Consensus 568 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 602 (713)
....+.+|.+++..++|.+|...+..|+...|.+.
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 66788899999999999999999999999888654
No 300
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=20.99 E-value=3.9e+02 Score=22.74 Aligned_cols=91 Identities=11% Similarity=0.080 Sum_probs=58.9
Q ss_pred HHHHHhhhHhhhcCCHHHHHhhhhcCCccccchhhhhhhhhhccccccCCCCCCCCCcchhHHHHHHHHHHHhhhhhhcc
Q 035707 85 EARALLGRLEFQKGNIEAALHVFEGIDVAAVTSRMKVSLSRRCDQNRRRSQSDAAPPMSMHAVSLLVEAIFLKTKSLQGL 164 (713)
Q Consensus 85 ~a~~llg~~~~~~g~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 164 (713)
.-.++-+...|-+.+|.+-+..++++++..+.. ..-|..|.+|.+.
T Consensus 9 q~a~i~a~~afl~~dYs~VI~~L~~~~~~~Lp~----------------------------------~~kY~LA~SYI~~ 54 (161)
T 2ynq_A 9 QEAYIQSTELFLQNKYSDVITTLEDYAPEDMPY----------------------------------VIQYELASSYVMT 54 (161)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHTTSCGGGSCH----------------------------------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCChhhCCh----------------------------------hHHHHHHHHHHHc
Confidence 344567888999999999999999887554432 3456778888888
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCCCCCCCCcccchHHHHHHHHHHhHHHHHhcCChhHHHHHHHHH
Q 035707 165 GRFEEACQSCKVILDTVEHALPEGLPGNHSIDCKLQETLNKAVELLPELYKLAGDPDETILSYRRA 230 (713)
Q Consensus 165 g~~~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~~~~a 230 (713)
.++.+-.+ +.|+.. +... + + + .+++==+|...|++++|+..=+++
T Consensus 55 e~Ls~eQK--enIln~---itlk------S-d----e-----~yL~YWIyiGRg~~~eAlDiA~~L 99 (161)
T 2ynq_A 55 ESLTEEQR--QTVSNN---ITLK------T-D----E-----QYMLYWIYIGRSQSEEALELARTI 99 (161)
T ss_dssp SSSCHHHH--HHHHHT---CCTT------S-C----H-----HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCCCHHHH--HHHHhh---CCcc------C-C----H-----HHHHHHHHHcCCchHHHHHHHHhc
Confidence 77775432 233431 1111 1 1 1 233445677889999999876655
Done!