BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035709
         (75 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
 pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
          Length = 463

 Score = 26.9 bits (58), Expect = 3.2,   Method: Composition-based stats.
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 33  QTPDKKALVVCFGELLIDFLPTE 55
           + PDK  + +CFG + + F P++
Sbjct: 272 EQPDKSVVFLCFGSMGVSFGPSQ 294


>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
           With Udp-Glucose
 pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
           With Udp-Glucose
          Length = 465

 Score = 26.9 bits (58), Expect = 3.2,   Method: Composition-based stats.
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 33  QTPDKKALVVCFGELLIDFLPTE 55
           + PDK  + +CFG + + F P++
Sbjct: 272 EQPDKSVVFLCFGSMGVSFGPSQ 294


>pdb|4EAH|A Chain A, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
           Bound To Actin
 pdb|4EAH|E Chain E, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
           Bound To Actin
 pdb|4EAH|C Chain C, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
           Bound To Actin
 pdb|4EAH|B Chain B, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
           Bound To Actin
          Length = 402

 Score = 25.4 bits (54), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 34  TPDKKALVVCFGELLIDFLPTESGVSLAKASAFRKER 70
           T D + L V F E L+ FLPTE+ V L +   + +ER
Sbjct: 115 TFDLQTLPVDFVECLMRFLPTEAEVKLLR--QYERER 149


>pdb|4IKH|A Chain A, Crystal Structure Of A Glutathione Transferase Family
           Member From Psuedomonas Fluorescens Pf-5, Target
           Efi-900003, With Two Glutathione Bound
          Length = 244

 Score = 25.4 bits (54), Expect = 9.6,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 26/51 (50%)

Query: 24  NKLPADEEGQTPDKKALVVCFGELLIDFLPTESGVSLAKASAFRKERLLML 74
           NK+PA  +   P  + L +     ++ +L  +SG  LA+ SA R E +  L
Sbjct: 71  NKIPAILDPHGPGDQPLALFESGAILIYLADKSGQLLAQESAARYETIQWL 121


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,187,954
Number of Sequences: 62578
Number of extensions: 69228
Number of successful extensions: 128
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124
Number of HSP's gapped (non-prelim): 4
length of query: 75
length of database: 14,973,337
effective HSP length: 44
effective length of query: 31
effective length of database: 12,219,905
effective search space: 378817055
effective search space used: 378817055
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)