BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035710
(420 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YIJ|A Chain A, Crystal Structure Of Phospholipase A1
pdb|2YIJ|B Chain B, Crystal Structure Of Phospholipase A1
Length = 419
Score = 180 bits (457), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 120/371 (32%), Positives = 180/371 (48%), Gaps = 59/371 (15%)
Query: 53 KLGNNWMEIQGSNNWEGLLDPLDQNLRSELLRYGQFVEATYRCFDFDPSSPTYATCKYPR 112
+ W ++ G N+W+G L PLDQ+LR ++ YG+ +A Y F+ + S Y R
Sbjct: 18 EFAKRWRDLSGQNHWKGXLQPLDQDLREYIIHYGEXAQAGYDTFNINTESQFAGASIYSR 77
Query: 113 NSFLTRLGIA----ETGYRMTKHLRATCGVHLPRWLDRAP----SWMSTQSSWIGYVAVC 164
F ++G+ T Y++TK + AT +H+P P W S +S+W GYVAV
Sbjct: 78 KDFFAKVGLEIAHPYTKYKVTKFIYATSDIHVPESFLLFPISREGW-SKESNWXGYVAVT 136
Query: 165 QDKKEIARLGRRDVVIAYRGTATCLEWLENLRATLTACWPPDDVATSVHLRPSTPMVQTG 224
D+ A LGRRD+V+++RG+ LEW+E+ L + R + G
Sbjct: 137 DDQG-TALLGRRDIVVSWRGSVQPLEWVEDFEFGLV------NAIKIFGERNDQVQIHQG 189
Query: 225 FFSLYTSSTDTCP----SLQEMVREEIKRVLDLYGDEPLSITITGHSLGAALATLTAYDI 280
++S+Y S + P + ++ V E+ R+L+ Y DE +SITI GHSLGAALATL+A DI
Sbjct: 190 WYSIYXSQDERSPFTKTNARDQVLREVGRLLEKYKDEEVSITICGHSLGAALATLSATDI 249
Query: 281 NSTFNNAPM--------VTVISFGGPRVGNRSFRCQLEKSGTKILRIVNSDDLITKVPGF 332
+ N P VT F PRVG+ FR SG + +R++ + +L +P +
Sbjct: 250 VANGYNRPKSRPDKSCPVTAFVFASPRVGDSDFRKLF--SGLEDIRVLRTRNLPDVIPIY 307
Query: 333 VIDDYDVANKQAVNVAALPSWLQKRVQNTHWVYADVGKELRLSSRDSPFL-SKVNVATCH 391
Y++VG E + +R SP+ S N+AT H
Sbjct: 308 ----------------------------PPIGYSEVGDEFPIDTRKSPYXKSPGNLATFH 339
Query: 392 DLSTYLHLVKG 402
L YLH V G
Sbjct: 340 CLEGYLHGVAG 350
>pdb|1DT3|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT3|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|E Chain E, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|F Chain F, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|G Chain G, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|H Chain H, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DU4|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1EIN|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1TIB|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|4DYH|A Chain A, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4DYH|B Chain B, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4EA6|A Chain A, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4EA6|B Chain B, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4FLF|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4FLF|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4GBG|A Chain A, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GBG|B Chain B, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GI1|A Chain A, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GI1|B Chain B, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GLB|A Chain A, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GLB|B Chain B, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GWL|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GWL|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GHW|A Chain A, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
pdb|4GHW|B Chain B, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
Length = 269
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 77/154 (50%), Gaps = 23/154 (14%)
Query: 178 VVIAYRGTATCLEWLENLRATLTACWPPDDVATSVHLRPSTPMVQTGFFSLYTSSTDTCP 237
+V+++RG+ + W+ NL L +D+ + GF S + S DT
Sbjct: 76 IVLSFRGSRSIENWIGNLNFDLKEI---NDICSGCR-------GHDGFTSSWRSVADT-- 123
Query: 238 SLQEMVREEIKRVLDLYGDEPLSITITGHSLGAALATLTAYDINSTFNNAPMVTVISFGG 297
L++ V + ++ D + TGHSLG ALAT+ D+ N + V S+G
Sbjct: 124 -LRQKVEDAVREHPDY------RVVFTGHSLGGALATVAGADLRG---NGYDIDVFSYGA 173
Query: 298 PRVGNRSFRCQLE-KSGTKILRIVNSDDLITKVP 330
PRVGNR+F L ++G + RI +++D++ ++P
Sbjct: 174 PRVGNRAFAEFLTVQTGGTLYRITHTNDIVPRLP 207
>pdb|1GT6|A Chain A, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
pdb|1GT6|B Chain B, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
Length = 269
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 77/154 (50%), Gaps = 23/154 (14%)
Query: 178 VVIAYRGTATCLEWLENLRATLTACWPPDDVATSVHLRPSTPMVQTGFFSLYTSSTDTCP 237
+V+++RG+ + W+ NL L +D+ + GF S + S DT
Sbjct: 76 IVLSFRGSRSIENWIGNLNFDLKEI---NDICSGCR-------GHDGFTSSWRSVADT-- 123
Query: 238 SLQEMVREEIKRVLDLYGDEPLSITITGHSLGAALATLTAYDINSTFNNAPMVTVISFGG 297
L++ V + ++ D + TGH+LG ALAT+ D+ N + V S+G
Sbjct: 124 -LRQKVEDAVREHPDY------RVVFTGHALGGALATVAGADLRG---NGYDIDVFSYGA 173
Query: 298 PRVGNRSFRCQLE-KSGTKILRIVNSDDLITKVP 330
PRVGNR+F L ++G + RI +++D++ ++P
Sbjct: 174 PRVGNRAFAEFLTVQTGGTLYRITHTNDIVPRLP 207
>pdb|1USW|A Chain A, Crystal Structure Of Ferulic Acid Esterase From
Aspergillus Niger
Length = 260
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 59/100 (59%), Gaps = 12/100 (12%)
Query: 238 SLQEMVREEIKRVLDLYGDEPLSITITGHSLGAALATLTAYDINSTFNNAPMVTVISFGG 297
S+Q+ V +K+ Y D ++T+TGHSLGA++A LTA +++T++N V + +FG
Sbjct: 106 SVQDQVESLVKQQASQYPD--YALTVTGHSLGASMAALTAAQLSATYDN---VRLYTFGE 160
Query: 298 PRVGNRSFRCQLEKS-------GTKILRIVNSDDLITKVP 330
PR GN++F + + T+ R+ +S+D I +P
Sbjct: 161 PRSGNQAFASYMNDAFQVSSPETTQYFRVTHSNDGIPNLP 200
>pdb|2HL6|A Chain A, Structure Of Homologously Expressed Ferrulate Esterase Of
Aspergillus Niger In Complex With Caps
pdb|2HL6|B Chain B, Structure Of Homologously Expressed Ferrulate Esterase Of
Aspergillus Niger In Complex With Caps
pdb|2IX9|A Chain A, Respective Role Of Protein Folding And Glycosylation In
The Thermal Stability Of Recombinant Feruloyl Esterase A
pdb|2IX9|B Chain B, Respective Role Of Protein Folding And Glycosylation In
The Thermal Stability Of Recombinant Feruloyl Esterase A
Length = 260
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 59/100 (59%), Gaps = 12/100 (12%)
Query: 238 SLQEMVREEIKRVLDLYGDEPLSITITGHSLGAALATLTAYDINSTFNNAPMVTVISFGG 297
S+Q+ V +K+ Y D ++T+TGHSLGA++A LTA +++T++N V + +FG
Sbjct: 106 SVQDQVESLVKQQASQYPD--YALTVTGHSLGASMAALTAAQLSATYDN---VRLYTFGE 160
Query: 298 PRVGNRSFRCQLEKS-------GTKILRIVNSDDLITKVP 330
PR GN++F + + T+ R+ +S+D I +P
Sbjct: 161 PRSGNQAFASYMNDAFQVSSPETTQYFRVTHSNDGIPNLP 200
>pdb|1UWC|A Chain A, Feruloyl Esterase From Aspergillus Niger
pdb|1UWC|B Chain B, Feruloyl Esterase From Aspergillus Niger
pdb|1UZA|A Chain A, Crystallographic Structure Of A Feruloyl Esterase From
Aspergillus Niger
pdb|1UZA|B Chain B, Crystallographic Structure Of A Feruloyl Esterase From
Aspergillus Niger
Length = 261
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 59/100 (59%), Gaps = 12/100 (12%)
Query: 238 SLQEMVREEIKRVLDLYGDEPLSITITGHSLGAALATLTAYDINSTFNNAPMVTVISFGG 297
S+Q+ V +K+ Y D ++T+TGHSLGA++A LTA +++T++N V + +FG
Sbjct: 106 SVQDQVESLVKQQASQYPD--YALTVTGHSLGASMAALTAAQLSATYDN---VRLYTFGE 160
Query: 298 PRVGNRSFRCQLEKS-------GTKILRIVNSDDLITKVP 330
PR GN++F + + T+ R+ +S+D I +P
Sbjct: 161 PRSGNQAFASYMNDAFQVSSPETTQYFRVTHSNDGIPNLP 200
>pdb|2BJH|A Chain A, Crystal Structure Of S133a Anfaea-Ferulic Acid Complex
pdb|2BJH|B Chain B, Crystal Structure Of S133a Anfaea-Ferulic Acid Complex
pdb|2BJH|C Chain C, Crystal Structure Of S133a Anfaea-Ferulic Acid Complex
Length = 260
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 59/100 (59%), Gaps = 12/100 (12%)
Query: 238 SLQEMVREEIKRVLDLYGDEPLSITITGHSLGAALATLTAYDINSTFNNAPMVTVISFGG 297
S+Q+ V +K+ Y D ++T+TGH+LGA++A LTA +++T++N V + +FG
Sbjct: 106 SVQDQVESLVKQQASQYPD--YALTVTGHALGASMAALTAAQLSATYDN---VRLYTFGE 160
Query: 298 PRVGNRSFRCQLEKS-------GTKILRIVNSDDLITKVP 330
PR GN++F + + T+ R+ +S+D I +P
Sbjct: 161 PRSGNQAFASYMNDAFQVSSPETTQYFRVTHSNDGIPNLP 200
>pdb|1TIA|A Chain A, An Unusual Buried Polar Cluster In A Family Of Fungal
Lipases
Length = 279
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 81/184 (44%), Gaps = 41/184 (22%)
Query: 152 STQSSWIGYVAVCQDKKEIARLGRRDVVIAYRGTATCLEWLENLRATLTACWPPDDVATS 211
ST + GY+AV VV+A+RG+ + W+ + AT
Sbjct: 58 STITDTAGYIAVDHTNSA--------VVLAFRGSYSVRNWVAD--------------ATF 95
Query: 212 VHLRPS---TPMVQTGFFSLYTSSTDTCPSLQEMVREEI-KRVLDLYGDEP-LSITITGH 266
VH P + + GF+S + ++VR++I K + ++ P + + GH
Sbjct: 96 VHTNPGLCDGCLAELGFWSSW-----------KLVRDDIIKELKEVVAQNPNYELVVVGH 144
Query: 267 SLGAALATLTAYDINSTFNNAPMVTVISFGGPRVGNRSFRCQLEKSGTKILRIVNSDDLI 326
SLGAA+ATL A D+ P + ++ PRVGN + + G R +++D +
Sbjct: 145 SLGAAVATLAATDLRG--KGYPSAKLYAYASPRVGNAALAKYITAQGNN-FRFTHTNDPV 201
Query: 327 TKVP 330
K+P
Sbjct: 202 PKLP 205
>pdb|1TGL|A Chain A, A Serine Protease Triad Forms The Catalytic Centre Of A
Triacylglycerol Lipase
Length = 269
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 67/159 (42%), Gaps = 24/159 (15%)
Query: 175 RRDVVIAYRGTATCLEWLENLRATLTACWPPDDVATSVHLRPSTPMVQTGFFSLYTSSTD 234
+ + I +RG+++ W+ +L + +PP T VH GF Y
Sbjct: 72 EKTIYIVFRGSSSIRNWIADL-TFVPVSYPPVS-GTKVH---------KGFLDSY----- 115
Query: 235 TCPSLQEMVREEIKRVLDLYGDEP-LSITITGHSLGAALATLTAYDINSTFNNAPMVTVI 293
E+ E + VLD + P + +TGHSLG A A L A D+ +
Sbjct: 116 -----GEVQNELVATVLDQFKQYPSYKVAVTGHSLGGATALLCALDLYQREEGLSSSNLF 170
Query: 294 SF--GGPRVGNRSFRCQLEKSGTKILRIVNSDDLITKVP 330
+ G PRVGN +F + +G R VN D++ +P
Sbjct: 171 LYTQGQPRVGNPAFANYVVSTGIPYRRTVNERDIVPHLP 209
>pdb|4TGL|A Chain A, Catalysis At The Interface: The Anatomy Of A
Conformational Change In A Triglyceride Lipase
Length = 269
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 67/159 (42%), Gaps = 24/159 (15%)
Query: 175 RRDVVIAYRGTATCLEWLENLRATLTACWPPDDVATSVHLRPSTPMVQTGFFSLYTSSTD 234
+ + I +RG+++ W+ +L + +PP T VH GF Y
Sbjct: 72 EKTIYIVFRGSSSIRNWIADL-TFVPVSYPPVS-GTKVH---------KGFLDSY----- 115
Query: 235 TCPSLQEMVREEIKRVLDLYGDEP-LSITITGHSLGAALATLTAYDINSTFNNAPMVTVI 293
E+ E + VLD + P + +TGHSLG A A L A D+ +
Sbjct: 116 -----GEVQNELVATVLDQFKQYPSYKVAVTGHSLGGATALLCALDLYQREEGLSSSNLF 170
Query: 294 SF--GGPRVGNRSFRCQLEKSGTKILRIVNSDDLITKVP 330
+ G PRVGN +F + +G R VN D++ +P
Sbjct: 171 LYTQGQPRVGNPAFANYVVSTGIPYRRTVNERDIVPHLP 209
>pdb|5TGL|A Chain A, A Model For Interfacial Activation In Lipases From The
Structure Of A Fungal Lipase-Inhibitor Complex
Length = 269
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 67/159 (42%), Gaps = 24/159 (15%)
Query: 175 RRDVVIAYRGTATCLEWLENLRATLTACWPPDDVATSVHLRPSTPMVQTGFFSLYTSSTD 234
+ + I +RG+++ W+ +L + +PP T VH GF Y
Sbjct: 72 EKTIYIVFRGSSSIRNWIADL-TFVPVSYPPVS-GTKVH---------KGFLDSY----- 115
Query: 235 TCPSLQEMVREEIKRVLDLYGDEP-LSITITGHSLGAALATLTAYDINSTFNNAPMVTVI 293
E+ E + VLD + P + +TGHSLG A A L A D+ +
Sbjct: 116 -----GEVQNELVATVLDQFKQYPSYKVAVTGHSLGGATALLCALDLYQREEGLSSSNLF 170
Query: 294 SF--GGPRVGNRSFRCQLEKSGTKILRIVNSDDLITKVP 330
+ G PRVGN +F + +G R VN D++ +P
Sbjct: 171 LYTQGQPRVGNPAFANYVVSTGIPYRRTVNERDIVPHLP 209
>pdb|1TIC|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|1TIC|B Chain B, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|1LGY|A Chain A, Lipase Ii From Rhizopus Niveus
pdb|1LGY|B Chain B, Lipase Ii From Rhizopus Niveus
pdb|1LGY|C Chain C, Lipase Ii From Rhizopus Niveus
Length = 269
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 51/116 (43%), Gaps = 19/116 (16%)
Query: 221 VQTGFFSLYTSST-DTCPSLQEMVREEIKRVLDLYGDEPLSITITGHSLGAALATLTAYD 279
V GF S Y D P +QE L + +TGHSLG A A L D
Sbjct: 108 VHAGFLSSYEQVVNDYFPVVQEQ----------LTAHPTYKVIVTGHSLGGAQALLAGMD 157
Query: 280 INSTFNNAPMVT-----VISFGGPRVGNRSFRCQLEKSGTKILRIVNSDDLITKVP 330
+ + P ++ + + GGPRVGN +F +E +G R V+ D++ VP
Sbjct: 158 L---YQREPRLSPKNLSIFTVGGPRVGNPTFAYYVESTGIPFQRTVHKRDIVPHVP 210
>pdb|3TGL|A Chain A, Structure And Molecular Model Refinement Of Rhizomucor
Miehei Triacylglyceride Lipase: A Case Study Of The Use
Of Simulated Annealing In Partial Model Refinement
Length = 269
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 66/159 (41%), Gaps = 24/159 (15%)
Query: 175 RRDVVIAYRGTATCLEWLENLRATLTACWPPDDVATSVHLRPSTPMVQTGFFSLYTSSTD 234
+ + I +RG+++ W+ +L + +PP T VH GF Y
Sbjct: 72 EKTIYIVFRGSSSIRNWIADL-TFVPVSYPPVS-GTKVH---------KGFLDSY----- 115
Query: 235 TCPSLQEMVREEIKRVLDLYGDEP-LSITITGHSLGAALATLTAYDINSTFNNAPMVTVI 293
E+ E + VLD + P + +TGHSLG A L A D+ +
Sbjct: 116 -----GEVQNELVATVLDQFKQYPSYKVAVTGHSLGGATVLLCALDLYQREEGLSSSNLF 170
Query: 294 SF--GGPRVGNRSFRCQLEKSGTKILRIVNSDDLITKVP 330
+ G PRVG+ +F + +G R VN D++ +P
Sbjct: 171 LYTQGQPRVGDPAFANYVVSTGIPYRRTVNERDIVPHLP 209
>pdb|3UUF|A Chain A, Crystal Structure Of Mono- And Diacylglycerol Lipase From
Malassezia Globosa
Length = 278
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 261 ITITGHSLGAALATLTAYDINSTFNNAPMVTVISFGGPRVGNRSFRCQL-EKSGTKILRI 319
+T+ GHSLGAA+ L A DI + T + FG PR+GN +F + +K G K I
Sbjct: 139 VTVIGHSLGAAMGLLCAMDIELRMDGGLYKTYL-FGLPRLGNPTFASFVDQKIGDKFHSI 197
Query: 320 VNSDDLITKVP 330
+N D + VP
Sbjct: 198 INGRDWVPTVP 208
>pdb|3UUE|A Chain A, Crystal Structure Of Mono- And Diacylglycerol Lipase From
Malassezia Globosa
Length = 279
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 261 ITITGHSLGAALATLTAYDINSTFNNAPMVTVISFGGPRVGNRSFRCQL-EKSGTKILRI 319
+T+ GHSLGAA+ L A DI + T + FG PR+GN +F + +K G K I
Sbjct: 140 VTVIGHSLGAAMGLLCAMDIELRMDGGLYKTYL-FGLPRLGNPTFASFVDQKIGDKFHSI 198
Query: 320 VNSDDLITKVP 330
+N D + VP
Sbjct: 199 INGRDWVPTVP 209
>pdb|3NGM|A Chain A, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|B Chain B, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|C Chain C, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|D Chain D, Crystal Structure Of Lipase From Gibberella Zeae
Length = 319
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 75/187 (40%), Gaps = 33/187 (17%)
Query: 149 SWMSTQSSWIGYVAVCQDKKEIARLGRRDVVIAYRGTATCLEWLENLRATLTACWPPDDV 208
S+ +++ GYVA +KEI V+++RG+ WL NL + DD
Sbjct: 54 SFTGSKTGIGGYVATDPTRKEI--------VVSFRGSINIRNWLTNLD------FDQDDC 99
Query: 209 ATSVHLRPSTPMVQTGFFSLYTSSTDTCPSLQEMVREEIKRVLDLYGDEP-LSITITGHS 267
+ + S V +GF + + E+ V P + GHS
Sbjct: 100 SLT-----SGCGVHSGFQNAW----------NEISAAATAAVAKARKANPSFKVVSVGHS 144
Query: 268 LGAALATLTAYDINSTFNNAPMVTVISFGGPRVGNRSFRCQLEKSGTKILRIVNSDDLIT 327
LG A+ATL ++ P+ + ++G PRVGN + R+ N+ D +
Sbjct: 145 LGGAVATLAGANLR--IGGTPL-DIYTYGSPRVGNTQLAAFVSNQAGGEFRVTNAKDPVP 201
Query: 328 KVPGFVI 334
++P +
Sbjct: 202 RLPPLIF 208
>pdb|3O0D|A Chain A, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|B Chain B, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|C Chain C, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|D Chain D, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|E Chain E, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|F Chain F, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|G Chain G, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
Length = 301
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 83/189 (43%), Gaps = 39/189 (20%)
Query: 159 GYVAVCQDKKEIARLGRRDVVIAYRGTATCLEWLENLRATLTACWPPDDVATSVHLRPST 218
GY+AV K+I + RGT + + + ++R + A D+A ++ +
Sbjct: 70 GYLAVDHASKQI--------YLVIRGTHSLEDVITDIR-IMQAPLTNFDLAANISSTATC 120
Query: 219 P--MVQTGFFSLYTSSTDTCPSLQEMVREEIKRVLDLYGDEPLSITITGHSLGAALATLT 276
+V GF Y ++ + + ++ V++ Y D I +TGHSLG A A L
Sbjct: 121 DDCLVHNGFIQSYNNTYN-------QIGPKLDSVIEQYPD--YQIAVTGHSLGGAAALL- 170
Query: 277 AYDINSTFN-NAPMVTVISFGGPRVGNRSFRCQLEK--------------SGTKILRIVN 321
+ IN N + P+ V++ G P VGN F ++K K+ RI +
Sbjct: 171 -FGINLKVNGHDPL--VVTLGQPIVGNAGFANWVDKLFFGQENPDVSKVSKDRKLYRITH 227
Query: 322 SDDLITKVP 330
D++ +VP
Sbjct: 228 RGDIVPQVP 236
>pdb|2ORY|A Chain A, Crystal Structure Of M37 Lipase
pdb|2ORY|B Chain B, Crystal Structure Of M37 Lipase
Length = 346
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 261 ITITGHSLGAALATLTAY---DINST-FNNAPMVTVISFGGPRVGNRSFRCQLEKS-GTK 315
I +TGHS G AL++ A DI + ++ I F GP GN F + G +
Sbjct: 168 ICVTGHSKGGALSSTLALWLKDIQGVKLSQNIDISTIPFAGPTAGNADFADYFDDCLGDQ 227
Query: 316 ILRIVNSDDLI 326
RI NS D++
Sbjct: 228 CTRIANSLDIV 238
>pdb|3C5V|A Chain A, Pp2a-Specific Methylesterase Apo Form (Pme)
Length = 316
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 238 SLQEMVREEIKRVLDLYGDEPLSITITGHSLGAALATLTA 277
S + M ++ V +YGD P I + GHS+G A+A TA
Sbjct: 89 SAETMAKDVGNVVEAMYGDLPPPIMLIGHSMGGAIAVHTA 128
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 242 MVREEIKRVLDLYGDEP-LSITITGHSLGAALATLTAYDINSTFNNAPMVTVISFGGPR 299
VR+ ++ V + D P L + + GHS+G A+A LTA + F +++ + P
Sbjct: 114 FVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPE 172
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 242 MVREEIKRVLDLYGDEP-LSITITGHSLGAALATLTAYDINSTFNNAPMVTVISFGGPR 299
VR+ ++ V + D P L + + GHS+G A+A LTA + F +++ + P
Sbjct: 96 FVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPE 154
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 243 VREEIKRVLDLYGDEP-LSITITGHSLGAALATLTAYDINSTFNNAPMVTVISFGGPR 299
VR+ ++ V + D P L + + GHS+G A+A LTA + F +++ + P
Sbjct: 114 VRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPE 171
>pdb|3C5W|P Chain P, Complex Between Pp2a-Specific Methylesterase Pme-1 And
Pp2a Core Enzyme
Length = 310
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 238 SLQEMVREEIKRVLDLYGDEPLSITITGHSLGAALATLTA 277
S + M ++ V +YGD P I + GH++G A+A TA
Sbjct: 93 SAETMAKDVGNVVEAMYGDLPPPIMLIGHAMGGAIAVHTA 132
>pdb|1AKN|A Chain A, Structure Of Bile-salt Activated Lipase
Length = 579
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 240 QEMVREEIKRVLDLYGDEPLSITITGHSLGAA---LATLTAYD 279
Q M +KR ++ +G +P +IT+ G S G A L TL+ Y+
Sbjct: 167 QHMAIAWVKRNIEAFGGDPDNITLFGESAGGASVSLQTLSPYN 209
>pdb|1AQL|A Chain A, Crystal Structure Of Bovine Bile-Salt Activated Lipase
Complexed With Taurocholate
pdb|1AQL|B Chain B, Crystal Structure Of Bovine Bile-Salt Activated Lipase
Complexed With Taurocholate
Length = 532
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 240 QEMVREEIKRVLDLYGDEPLSITITGHSLGAA---LATLTAYD 279
Q M +KR ++ +G +P +IT+ G S G A L TL+ Y+
Sbjct: 167 QHMAIAWVKRNIEAFGGDPDNITLFGESAGGASVSLQTLSPYN 209
>pdb|2BCE|A Chain A, Cholesterol Esterase From Bos Taurus
Length = 579
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 240 QEMVREEIKRVLDLYGDEPLSITITGHSLGAA---LATLTAYD 279
Q M +KR ++ +G +P IT+ G S G A L TL+ Y+
Sbjct: 167 QHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYN 209
>pdb|3JW8|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase
pdb|3JW8|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase
Length = 320
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 242 MVREEIKRVLDLYGDEP-LSITITGHSLGAALATLTAYDINSTFNNAPMVTVISFGGPR 299
VR+ ++ V D P L + + GHS G A+A LTA + F +++ + P
Sbjct: 113 FVRDVLQHVDSXQKDYPGLPVFLLGHSXGGAIAILTAAERPGHFAGXVLISPLVLANPE 171
>pdb|1JMY|A Chain A, Truncated Recombinant Human Bile Salt Stimulated Lipase
Length = 522
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 240 QEMVREEIKRVLDLYGDEPLSITITGHSLGAA---LATLTAYD 279
Q M +KR + +G +P +IT+ G S G A L TL+ Y+
Sbjct: 167 QHMAIAWVKRNIAAFGGDPNNITLFGESAGGASVSLQTLSPYN 209
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 246 EIKRVLDLYGDEPLSITITGHSLGAALATLTA 277
+I RV+ D+PL + GHS+GA LAT A
Sbjct: 84 QIDRVIQELPDQPL--LLVGHSMGAMLATAIA 113
>pdb|2DI4|A Chain A, Crystal Structure Of The Ftsh Protease Domain
pdb|2DI4|B Chain B, Crystal Structure Of The Ftsh Protease Domain
Length = 238
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 184 GTATCLEWLENLRATLTACWPPDDVATSVHLRPSTPMVQTGFFSLYTSSTDTCPSLQEMV 243
G L+ +L + + W D + +R V F T++ DT P L +
Sbjct: 96 GAENDLQRATDLAYRMVSMWGMSDKVGPIAIR----RVANPFLGGMTTAVDTSPDLLREI 151
Query: 244 REEIKRVL 251
EE+KR++
Sbjct: 152 DEEVKRII 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,384,903
Number of Sequences: 62578
Number of extensions: 502515
Number of successful extensions: 1665
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1627
Number of HSP's gapped (non-prelim): 32
length of query: 420
length of database: 14,973,337
effective HSP length: 101
effective length of query: 319
effective length of database: 8,652,959
effective search space: 2760293921
effective search space used: 2760293921
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)