BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>035711
MGMVVVISLPLILFSLLLGFGCYYLGRARGRQDIRTNPQVFGVPAPPPGTGSEATTFTYP
SSPAAAAAAAATKFKPDNSANV

High Scoring Gene Products

Symbol, full name Information P value
AT1G31335 protein from Arabidopsis thaliana 4.1e-10

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  035711
        (82 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:505006161 - symbol:AT1G31335 "AT1G31335" speci...   144  4.1e-10   1


>TAIR|locus:505006161 [details] [associations]
            symbol:AT1G31335 "AT1G31335" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005576
            "extracellular region" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0005886 "plasma membrane"
            evidence=IDA] EMBL:CP002684 GO:GO:0005886 EMBL:AY084479
            EMBL:BT025303 IPI:IPI00540151 RefSeq:NP_564378.1 UniGene:At.40366
            EnsemblPlants:AT1G31335.1 GeneID:840022 KEGG:ath:AT1G31335
            TAIR:At1g31335 HOGENOM:HOG000240462 InParanoid:Q8LG39 OMA:RTNAQVF
            PhylomeDB:Q8LG39 ProtClustDB:CLSN2688143 Genevestigator:Q8LG39
            Uniprot:Q8LG39
        Length = 70

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 31/61 (50%), Positives = 40/61 (65%)

Query:    22 CYYLGRARGRQDIRTNPQVFGVPAPPPGTGSEATTFTYPSSPXXXXXXXXTKFKPDNSAN 81
             CY+LG++RGR++IRTNPQV+G PAPPPG  + ++    P SP           KPDNS N
Sbjct:    22 CYFLGKSRGRREIRTNPQVYGAPAPPPGAIAASSP---PLSPHA---------KPDNSHN 69

Query:    82 V 82
             V
Sbjct:    70 V 70


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.134   0.421    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       82        57   0.00091  102 3  11 22  0.39    28
                                                     29  0.44    27


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  392 (42 KB)
  Total size of DFA:  69 KB (2062 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.04u 0.09s 9.13t   Elapsed:  00:00:00
  Total cpu time:  9.04u 0.09s 9.13t   Elapsed:  00:00:00
  Start:  Fri May 10 04:55:31 2013   End:  Fri May 10 04:55:31 2013

Back to top