Query 035711
Match_columns 82
No_of_seqs 18 out of 20
Neff 2.0
Searched_HMMs 46136
Date Fri Mar 29 05:38:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035711.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035711hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14610 DUF4448: Protein of u 94.5 0.037 7.9E-07 38.9 2.8 31 3-34 158-188 (189)
2 PF12273 RCR: Chitin synthesis 90.6 0.26 5.6E-06 32.9 2.6 27 7-33 4-30 (130)
3 PF15102 TMEM154: TMEM154 prot 88.4 0.68 1.5E-05 33.8 3.6 21 2-22 56-76 (146)
4 PF12501 DUF3708: Phosphate AT 88.2 0.17 3.7E-06 36.2 0.4 23 12-34 2-24 (170)
5 PF01299 Lamp: Lysosome-associ 85.7 0.56 1.2E-05 35.1 1.9 21 13-33 282-302 (306)
6 PRK02898 cobalt transport prot 85.4 0.46 1E-05 32.8 1.3 24 13-36 70-97 (100)
7 PF15050 SCIMP: SCIMP protein 82.5 0.6 1.3E-05 34.1 0.9 45 6-50 11-77 (133)
8 PRK01636 ccrB camphor resistan 75.9 1.7 3.7E-05 29.5 1.5 30 11-40 86-115 (118)
9 PF12606 RELT: Tumour necrosis 72.0 4.8 0.0001 24.7 2.6 31 3-33 1-31 (50)
10 COG3630 OadG Na+-transporting 72.0 2.1 4.5E-05 29.1 1.1 31 13-51 23-53 (84)
11 PF12273 RCR: Chitin synthesis 71.1 2.9 6.2E-05 27.9 1.6 21 23-43 16-37 (130)
12 PF12768 Rax2: Cortical protei 68.7 7.2 0.00016 29.9 3.5 32 2-33 227-259 (281)
13 PRK00523 hypothetical protein; 66.6 2.4 5.2E-05 28.0 0.5 35 5-39 4-39 (72)
14 PF03672 UPF0154: Uncharacteri 65.3 4 8.6E-05 26.3 1.3 28 11-38 2-30 (64)
15 PRK09458 pspB phage shock prot 63.7 4.1 8.8E-05 27.0 1.2 33 1-34 1-36 (75)
16 PF11027 DUF2615: Protein of u 63.4 14 0.0003 25.5 3.8 23 11-33 58-80 (103)
17 PF14991 MLANA: Protein melan- 62.4 2.3 4.9E-05 30.5 -0.2 30 7-36 29-58 (118)
18 smart00831 Cation_ATPase_N Cat 62.3 9.1 0.0002 21.8 2.4 18 10-27 47-64 (64)
19 PTZ00382 Variant-specific surf 61.3 7 0.00015 25.8 2.0 29 2-31 66-95 (96)
20 PF06682 DUF1183: Protein of u 60.9 28 0.0006 27.9 5.5 20 9-28 159-178 (318)
21 PF13974 YebO: YebO-like prote 56.6 4.2 9E-05 27.2 0.3 28 11-41 3-30 (80)
22 PF05510 Sarcoglycan_2: Sarcog 56.4 3.1 6.8E-05 34.1 -0.4 33 5-37 287-322 (386)
23 PF05624 LSR: Lipolysis stimul 54.0 11 0.00024 23.7 1.8 20 3-23 4-23 (49)
24 COG3353 FlaF Putative archaeal 54.0 5.2 0.00011 29.4 0.5 39 1-39 1-39 (137)
25 PF08285 DPM3: Dolichol-phosph 53.9 12 0.00025 24.9 2.1 16 13-28 41-56 (91)
26 PF07213 DAP10: DAP10 membrane 52.7 15 0.00033 24.6 2.5 29 12-41 44-72 (79)
27 COG3763 Uncharacterized protei 52.5 6.8 0.00015 26.0 0.8 32 7-38 5-37 (71)
28 PRK10370 formate-dependent nit 51.4 9.4 0.0002 26.7 1.4 24 4-27 7-31 (198)
29 PRK15086 ethanolamine utilizat 50.8 13 0.00029 30.7 2.3 18 8-25 173-190 (372)
30 PF09842 DUF2069: Predicted me 50.2 12 0.00027 25.0 1.8 23 10-32 86-108 (109)
31 PF04346 EutH: Ethanolamine ut 49.5 15 0.00032 30.1 2.4 21 7-27 171-191 (354)
32 KOG4841 Dolichol-phosphate man 49.2 12 0.00026 26.1 1.6 14 14-27 46-59 (95)
33 PF14341 PilX_N: PilX N-termin 49.0 7.1 0.00015 22.9 0.4 21 2-22 2-22 (51)
34 PLN02987 Cytochrome P450, fami 47.3 28 0.0006 27.1 3.5 26 7-32 3-28 (472)
35 PF11770 GAPT: GRB2-binding ad 47.2 7.1 0.00015 29.2 0.2 23 7-29 14-36 (158)
36 PF11743 DUF3301: Protein of u 47.2 14 0.0003 24.3 1.6 22 12-33 2-23 (97)
37 PHA03291 envelope glycoprotein 47.1 15 0.00033 30.9 2.2 42 4-46 288-330 (401)
38 PF05795 Plasmodium_Vir: Plasm 44.7 9.4 0.0002 27.1 0.6 28 5-33 290-317 (354)
39 TIGR02976 phageshock_pspB phag 44.4 9.3 0.0002 24.8 0.5 17 4-20 3-19 (75)
40 COG1301 GltP Na+/H+-dicarboxyl 44.1 20 0.00044 29.3 2.4 21 9-29 145-165 (415)
41 PRK05696 fliL flagellar basal 44.1 30 0.00065 24.1 3.0 22 4-26 21-42 (170)
42 TIGR03349 IV_VI_DotU type IV / 43.1 7.2 0.00016 27.7 -0.2 23 10-33 106-129 (183)
43 PLN03207 stomagen; Provisional 42.4 41 0.00089 24.1 3.5 41 8-51 12-52 (113)
44 PF06024 DUF912: Nucleopolyhed 42.3 16 0.00034 24.1 1.3 35 2-36 61-95 (101)
45 PF15018 InaF-motif: TRP-inter 42.3 3.2 7E-05 24.5 -1.7 16 2-17 12-27 (38)
46 TIGR03370 PEPCTERM_Roseo varia 42.1 20 0.00043 19.8 1.5 23 7-29 1-23 (26)
47 PRK01253 preprotein translocas 41.7 27 0.00058 21.5 2.2 18 3-20 33-50 (54)
48 TIGR02866 CoxB cytochrome c ox 40.7 35 0.00077 24.2 3.0 25 8-32 18-42 (201)
49 COG3029 FrdC Fumarate reductas 39.4 30 0.00065 25.3 2.5 20 8-27 32-51 (129)
50 PF10265 DUF2217: Uncharacteri 39.0 48 0.001 28.4 4.0 34 13-48 23-56 (514)
51 PF15102 TMEM154: TMEM154 prot 38.9 20 0.00044 26.2 1.5 30 3-32 60-89 (146)
52 TIGR02595 PEP_exosort PEP-CTER 38.2 36 0.00078 17.9 2.1 20 10-29 4-23 (26)
53 PF14575 EphA2_TM: Ephrin type 38.1 9 0.00019 24.2 -0.3 25 10-34 8-32 (75)
54 PRK10781 rcsF outer membrane l 37.8 58 0.0013 23.3 3.7 16 9-25 4-19 (133)
55 PRK02919 oxaloacetate decarbox 37.7 7.9 0.00017 25.4 -0.7 25 2-31 17-41 (82)
56 PF06553 BNIP3: BNIP3; InterP 37.5 19 0.00042 27.3 1.3 26 6-34 165-190 (197)
57 MTH00060 ND3 NADH dehydrogenas 35.7 25 0.00054 24.2 1.5 27 3-29 1-27 (116)
58 PF05545 FixQ: Cbb3-type cytoc 35.7 42 0.00091 19.1 2.3 18 11-28 16-33 (49)
59 PRK04987 fumarate reductase su 35.4 38 0.00083 24.4 2.5 20 8-27 33-52 (130)
60 COG3192 EutH Ethanolamine util 35.4 18 0.00038 30.4 0.8 29 9-42 185-213 (389)
61 PF01102 Glycophorin_A: Glycop 35.2 33 0.00071 24.0 2.1 15 20-34 83-97 (122)
62 PF09335 SNARE_assoc: SNARE as 34.7 27 0.00058 21.3 1.4 16 19-34 31-46 (123)
63 PRK14221 camphor resistance pr 34.3 35 0.00076 23.2 2.1 21 9-29 102-123 (124)
64 PRK08455 fliL flagellar basal 34.2 58 0.0013 23.5 3.3 22 11-32 27-48 (182)
65 PF00672 HAMP: HAMP domain; I 34.0 48 0.001 18.4 2.3 21 11-31 5-25 (70)
66 PRK07718 fliL flagellar basal 33.7 23 0.00051 24.2 1.1 23 12-34 13-35 (142)
67 PF15048 OSTbeta: Organic solu 33.7 34 0.00073 24.7 2.0 19 11-29 40-58 (125)
68 PF10873 DUF2668: Protein of u 33.4 1.4E+02 0.003 22.4 5.2 57 5-62 66-128 (155)
69 PF11884 DUF3404: Domain of un 33.3 11 0.00025 29.6 -0.5 28 6-35 235-262 (262)
70 PRK01844 hypothetical protein; 33.3 28 0.00061 23.0 1.4 29 11-39 9-38 (72)
71 PRK13603 fumarate reductase su 33.1 44 0.00096 24.0 2.5 20 8-27 29-48 (126)
72 cd00546 QFR_TypeD_subunitC Qui 32.4 46 0.001 23.8 2.5 20 8-27 29-48 (124)
73 PF07946 DUF1682: Protein of u 32.3 28 0.00061 26.6 1.5 23 12-34 10-32 (321)
74 PHA03290 envelope glycoprotein 32.0 57 0.0012 27.2 3.3 30 2-31 272-301 (357)
75 PF03597 CcoS: Cytochrome oxid 32.0 40 0.00087 20.0 1.8 29 5-33 3-31 (45)
76 PF13624 SurA_N_3: SurA N-term 31.1 16 0.00035 23.6 0.0 23 7-29 14-36 (154)
77 PF10060 DUF2298: Uncharacteri 31.1 30 0.00065 28.2 1.5 25 6-30 240-264 (473)
78 PRK03598 putative efflux pump 31.0 46 0.001 24.5 2.4 30 4-34 4-33 (331)
79 TIGR03153 cytochr_NrfH cytochr 30.9 24 0.00051 24.0 0.8 22 12-33 2-23 (135)
80 COG1807 ArnT 4-amino-4-deoxy-L 30.7 41 0.00089 26.4 2.2 26 7-32 86-111 (535)
81 PRK06531 yajC preprotein trans 30.5 36 0.00078 23.5 1.6 21 9-29 3-23 (113)
82 PRK10920 putative uroporphyrin 29.7 26 0.00056 28.5 0.9 22 7-28 39-60 (390)
83 PF02398 Corona_7: Coronavirus 29.6 42 0.00091 23.6 1.9 14 12-25 83-96 (101)
84 KOG3457 Sec61 protein transloc 29.6 34 0.00075 23.5 1.4 17 4-20 63-79 (88)
85 PF10541 KASH: Nuclear envelop 29.5 18 0.00039 23.0 0.0 22 4-25 5-27 (58)
86 PF03918 CcmH: Cytochrome C bi 29.4 18 0.00039 25.5 0.0 26 7-32 105-130 (148)
87 PF09777 OSTMP1: Osteopetrosis 29.2 17 0.00038 27.2 -0.1 29 7-35 195-223 (237)
88 PF09451 ATG27: Autophagy-rela 29.1 47 0.001 24.7 2.2 16 11-26 205-220 (268)
89 PF02300 Fumarate_red_C: Fumar 29.1 59 0.0013 23.3 2.6 20 8-27 32-51 (129)
90 PRK11283 gltP glutamate/aspart 29.0 43 0.00094 27.0 2.1 20 8-27 160-179 (437)
91 PRK10893 lipopolysaccharide ex 28.8 57 0.0012 23.5 2.5 21 9-29 8-28 (192)
92 PF10749 DUF2534: Protein of u 28.8 13 0.00028 25.5 -0.8 25 3-28 60-84 (85)
93 PF03302 VSP: Giardia variant- 28.6 54 0.0012 26.0 2.5 24 2-25 367-391 (397)
94 PF14316 DUF4381: Domain of un 28.2 45 0.00098 22.5 1.8 21 11-31 27-47 (146)
95 PF06667 PspB: Phage shock pro 27.9 38 0.00082 22.1 1.3 20 1-21 1-20 (75)
96 PLN02687 flavonoid 3'-monooxyg 27.9 91 0.002 24.2 3.6 29 8-36 4-32 (517)
97 TIGR01167 LPXTG_anchor LPXTG-m 27.5 85 0.0019 16.0 2.4 14 16-29 19-32 (34)
98 PRK14230 camphor resistance pr 27.1 41 0.0009 22.8 1.5 24 9-32 94-117 (119)
99 PF08867 FRG: FRG domain; Int 27.0 26 0.00057 22.3 0.5 17 33-49 62-78 (104)
100 PF01141 Gag_p12: Gag polyprot 26.7 28 0.0006 23.9 0.6 10 24-33 64-73 (85)
101 PRK00269 zipA cell division pr 26.7 52 0.0011 26.5 2.1 27 7-33 5-33 (293)
102 PF00375 SDF: Sodium:dicarboxy 26.6 64 0.0014 24.8 2.6 22 8-29 138-159 (390)
103 COG2962 RarD Predicted permeas 26.3 47 0.001 26.7 1.8 27 8-34 148-174 (293)
104 PF04277 OAD_gamma: Oxaloaceta 26.2 1E+02 0.0022 18.5 2.9 16 14-29 18-33 (79)
105 PRK11624 cdsA CDP-diglyceride 26.1 57 0.0012 24.8 2.2 15 20-34 166-180 (285)
106 PF06678 DUF1179: Protein of u 25.9 60 0.0013 22.8 2.1 18 7-25 2-19 (103)
107 KOG4753 Predicted membrane pro 25.7 57 0.0012 23.7 2.0 19 11-29 58-76 (124)
108 PF04246 RseC_MucC: Positive r 24.9 78 0.0017 20.9 2.4 16 9-24 77-92 (135)
109 PF05393 Hum_adeno_E3A: Human 24.9 80 0.0017 22.0 2.5 12 25-36 56-67 (94)
110 PF02447 GntP_permease: GntP f 24.7 53 0.0011 26.9 1.9 26 9-34 264-291 (441)
111 COG1930 CbiN ABC-type cobalt t 24.6 33 0.00073 24.0 0.7 23 13-35 68-94 (97)
112 PF12072 DUF3552: Domain of un 24.6 43 0.00093 24.0 1.2 23 12-34 6-29 (201)
113 PF15117 UPF0697: Uncharacteri 24.2 33 0.00073 24.1 0.6 23 13-35 22-44 (99)
114 COG0575 CdsA CDP-diglyceride s 24.1 68 0.0015 23.7 2.2 15 20-34 148-162 (265)
115 KOG4268 Uncharacterized conser 24.0 71 0.0015 24.6 2.4 22 8-29 137-158 (189)
116 TIGR02762 TraL_TIGR type IV co 23.8 19 0.0004 23.5 -0.7 6 28-33 60-65 (95)
117 PRK11878 psaM photosystem I re 23.8 53 0.0011 19.0 1.3 28 3-30 1-28 (34)
118 PF12669 P12: Virus attachment 23.8 43 0.00094 20.4 1.0 14 12-25 3-16 (58)
119 TIGR01165 cbiN cobalt transpor 23.7 37 0.00079 23.3 0.7 19 12-30 69-91 (91)
120 PF09624 DUF2393: Protein of u 23.6 68 0.0015 21.3 2.0 22 7-28 18-39 (149)
121 PF10694 DUF2500: Protein of u 23.6 27 0.00058 22.9 0.0 17 12-28 6-22 (110)
122 PRK14750 kdpF potassium-transp 23.5 92 0.002 17.7 2.2 17 10-26 8-24 (29)
123 PF10939 DUF2631: Protein of u 23.5 71 0.0015 20.7 2.0 13 21-33 44-56 (65)
124 PF01569 PAP2: PAP2 superfamil 23.4 1.1E+02 0.0024 18.5 2.7 22 8-29 81-102 (129)
125 PRK14857 tatA twin arginine tr 23.1 71 0.0015 21.4 2.0 24 1-27 1-24 (90)
126 PF06836 DUF1240: Protein of u 22.7 58 0.0013 21.9 1.5 25 3-27 10-34 (95)
127 TIGR00383 corA magnesium Mg(2+ 22.6 74 0.0016 23.1 2.1 20 11-30 297-316 (318)
128 PRK14224 camphor resistance pr 22.6 53 0.0011 22.6 1.3 23 10-32 98-120 (126)
129 PF04835 Pox_A9: A9 protein co 22.5 28 0.00061 22.1 -0.0 22 8-29 29-50 (54)
130 PF09972 DUF2207: Predicted me 22.2 1.1E+02 0.0024 22.8 3.0 16 19-34 242-257 (511)
131 PRK14207 camphor resistance pr 22.2 64 0.0014 21.8 1.7 23 10-32 101-123 (123)
132 TIGR01713 typeII_sec_gspC gene 22.0 61 0.0013 24.4 1.6 21 12-32 2-22 (259)
133 PF11137 DUF2909: Protein of u 21.9 52 0.0011 20.8 1.1 26 7-32 5-30 (63)
134 PF10131 PTPS_related: 6-pyruv 21.9 67 0.0014 27.1 2.0 21 11-31 30-50 (616)
135 COG3190 FliO Flagellar biogene 21.9 87 0.0019 22.7 2.3 20 9-28 29-48 (137)
136 COG2959 HemX Uncharacterized e 21.8 61 0.0013 27.2 1.8 22 7-28 35-56 (391)
137 PF00430 ATP-synt_B: ATP synth 21.7 89 0.0019 19.6 2.1 19 10-28 5-23 (132)
138 PRK00442 tatA twin arginine tr 21.5 53 0.0012 22.4 1.2 21 1-21 1-21 (92)
139 PHA00350 putative assembly pro 21.5 1.5E+02 0.0032 24.3 3.9 14 13-26 233-246 (399)
140 PF13796 Sensor: Putative sens 21.4 46 0.00099 22.6 0.8 30 20-49 37-66 (181)
141 PF01034 Syndecan: Syndecan do 21.2 33 0.00071 22.2 0.1 21 11-34 22-42 (64)
142 PRK14210 camphor resistance pr 21.1 61 0.0013 22.0 1.4 23 10-32 103-125 (127)
143 TIGR03802 Asp_Ala_antiprt aspa 21.0 74 0.0016 26.4 2.1 21 8-29 9-29 (562)
144 TIGR03662 Chlor_Arch_YYY Chlor 20.7 54 0.0012 28.8 1.3 23 6-28 278-300 (723)
145 TIGR03529 GldK_short gliding m 20.7 62 0.0013 25.4 1.5 27 7-33 3-29 (344)
146 smart00182 CULLIN Cullin. 20.4 1.1E+02 0.0023 20.1 2.4 26 7-32 101-126 (142)
147 PF02203 TarH: Tar ligand bind 20.3 18 0.00038 23.3 -1.3 30 3-32 11-40 (171)
148 PRK15049 L-asparagine permease 20.1 1.1E+02 0.0023 24.3 2.7 21 17-37 459-479 (499)
No 1
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=94.51 E-value=0.037 Score=38.86 Aligned_cols=31 Identities=23% Similarity=0.448 Sum_probs=24.5
Q ss_pred eEEEehhhHHHHHHHHHHHhhhhhcccccccc
Q 035711 3 MVVVISLPLILFSLLLGFGCYYLGRARGRQDI 34 (82)
Q Consensus 3 ~vlVISLP~I~f~llLgfGcYflGr~rGR~E~ 34 (82)
..+.|+||.++.+++++..++++. +|++|.+
T Consensus 158 ~~laI~lPvvv~~~~~~~~~~~~~-~R~~Rri 188 (189)
T PF14610_consen 158 YALAIALPVVVVVLALIMYGFFFW-NRKKRRI 188 (189)
T ss_pred eeEEEEccHHHHHHHHHHHhhhee-eccceec
Confidence 489999999999999888888887 4444443
No 2
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=90.64 E-value=0.26 Score=32.92 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=19.7
Q ss_pred ehhhHHHHHHHHHHHhhhhhccccccc
Q 035711 7 ISLPLILFSLLLGFGCYYLGRARGRQD 33 (82)
Q Consensus 7 ISLP~I~f~llLgfGcYflGr~rGR~E 33 (82)
+-+=+|++.||+-|+|+++.|.|-|+.
T Consensus 4 l~~iii~~i~l~~~~~~~~~rRR~r~G 30 (130)
T PF12273_consen 4 LFAIIIVAILLFLFLFYCHNRRRRRRG 30 (130)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 444566777777788888888888774
No 3
>PF15102 TMEM154: TMEM154 protein family
Probab=88.44 E-value=0.68 Score=33.77 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=15.0
Q ss_pred ceEEEehhhHHHHHHHHHHHh
Q 035711 2 GMVVVISLPLILFSLLLGFGC 22 (82)
Q Consensus 2 G~vlVISLP~I~f~llLgfGc 22 (82)
.|+++|-+|+|+|.|||-+..
T Consensus 56 efiLmIlIP~VLLvlLLl~vV 76 (146)
T PF15102_consen 56 EFILMILIPLVLLVLLLLSVV 76 (146)
T ss_pred ceEEEEeHHHHHHHHHHHHHH
Confidence 478999999888866554443
No 4
>PF12501 DUF3708: Phosphate ATP-binding cassette transporter; InterPro: IPR022182 This domain family is found in bacteria, and is typically between 143 and 173 amino acids in length. The family is found in association with PF00528 from PFAM. There is a single completely conserved residue P that may be functionally important.
Probab=88.20 E-value=0.17 Score=36.25 Aligned_cols=23 Identities=48% Similarity=0.728 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhhhhcccccccc
Q 035711 12 ILFSLLLGFGCYYLGRARGRQDI 34 (82)
Q Consensus 12 I~f~llLgfGcYflGr~rGR~E~ 34 (82)
+++.++|+...|++||.|-++-.
T Consensus 2 lllll~l~~~~~~~gr~Ra~~~~ 24 (170)
T PF12501_consen 2 LLLLLLLGAVGYFLGRRRARALA 24 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999876554
No 5
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=85.65 E-value=0.56 Score=35.12 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=16.1
Q ss_pred HHHHHHHHHhhhhhccccccc
Q 035711 13 LFSLLLGFGCYYLGRARGRQD 33 (82)
Q Consensus 13 ~f~llLgfGcYflGr~rGR~E 33 (82)
..++||++..|++||+|-|+.
T Consensus 282 a~lvlivLiaYli~Rrr~~~g 302 (306)
T PF01299_consen 282 AGLVLIVLIAYLIGRRRSRAG 302 (306)
T ss_pred HHHHHHHHHhheeEecccccc
Confidence 345566778899999998874
No 6
>PRK02898 cobalt transport protein CbiN; Provisional
Probab=85.39 E-value=0.46 Score=32.81 Aligned_cols=24 Identities=38% Similarity=0.549 Sum_probs=17.7
Q ss_pred HHHHHHH----HHhhhhhcccccccccc
Q 035711 13 LFSLLLG----FGCYYLGRARGRQDIRT 36 (82)
Q Consensus 13 ~f~llLg----fGcYflGr~rGR~E~~t 36 (82)
||+|=-+ +-+|+||+.|||++.+.
T Consensus 70 LFaLQAAiGAgiIgY~lG~~~gr~~~~~ 97 (100)
T PRK02898 70 LFALQAALGAGIIGYILGYYKGRSKRRN 97 (100)
T ss_pred HHHHHHHHhhhhhheeeeehhhhhhhhh
Confidence 5555444 44899999999998654
No 7
>PF15050 SCIMP: SCIMP protein
Probab=82.46 E-value=0.6 Score=34.11 Aligned_cols=45 Identities=31% Similarity=0.608 Sum_probs=30.4
Q ss_pred EehhhHHHHHHHHHHHhhhhhc----------------cccccc--cccC----CccccCCCCCCCc
Q 035711 6 VISLPLILFSLLLGFGCYYLGR----------------ARGRQD--IRTN----PQVFGVPAPPPGT 50 (82)
Q Consensus 6 VISLP~I~f~llLgfGcYflGr----------------~rGR~E--~~t~----~QvyG~P~PPpg~ 50 (82)
.+....|+.+++||+-.|-.-| +++|.| |+.| .++==+|+||.|.
T Consensus 11 iLAVaII~vS~~lglIlyCvcR~~lRqGkkweiakp~k~~~rdeEkmYENv~n~~~~~LPpLPPRg~ 77 (133)
T PF15050_consen 11 ILAVAIILVSVVLGLILYCVCRWQLRQGKKWEIAKPLKQKQRDEEKMYENVLNQSPVQLPPLPPRGS 77 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccceeccchhhhcccHHHHHHHhhcCCcCCCCCCCCCCC
Confidence 3455678888999998885543 344444 7776 4455678888776
No 8
>PRK01636 ccrB camphor resistance protein CrcB; Provisional
Probab=75.85 E-value=1.7 Score=29.47 Aligned_cols=30 Identities=30% Similarity=0.543 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhhhhhccccccccccCCcc
Q 035711 11 LILFSLLLGFGCYYLGRARGRQDIRTNPQV 40 (82)
Q Consensus 11 ~I~f~llLgfGcYflGr~rGR~E~~t~~Qv 40 (82)
-+++++++|+.+.++|..-||+.-+.+||+
T Consensus 86 y~~~s~~~gl~a~~lG~~l~~~~~~~~~~~ 115 (118)
T PRK01636 86 YLVASLIVGYIAVELGLMIGKKEKPKDPQV 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCchh
Confidence 467788889999888888888777777886
No 9
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=72.05 E-value=4.8 Score=24.68 Aligned_cols=31 Identities=16% Similarity=0.270 Sum_probs=25.9
Q ss_pred eEEEehhhHHHHHHHHHHHhhhhhccccccc
Q 035711 3 MVVVISLPLILFSLLLGFGCYYLGRARGRQD 33 (82)
Q Consensus 3 ~vlVISLP~I~f~llLgfGcYflGr~rGR~E 33 (82)
|.+++-+|+||...|||+...=+-|+.|=+-
T Consensus 1 y~~~~iV~i~iv~~lLg~~I~~~~K~ygYkh 31 (50)
T PF12606_consen 1 YIAFLIVSIFIVMGLLGLSICTTLKAYGYKH 31 (50)
T ss_pred CeehHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 6778888999999999999888888888554
No 10
>COG3630 OadG Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit [Energy production and conversion]
Probab=72.00 E-value=2.1 Score=29.05 Aligned_cols=31 Identities=26% Similarity=0.306 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhhhhccccccccccCCccccCCCCCCCcc
Q 035711 13 LFSLLLGFGCYYLGRARGRQDIRTNPQVFGVPAPPPGTG 51 (82)
Q Consensus 13 ~f~llLgfGcYflGr~rGR~E~~t~~QvyG~P~PPpg~~ 51 (82)
+|+.+|.+..|+.|+-.+|. +..|.++|.+.
T Consensus 23 lfL~iLi~~~~~m~~~v~r~--------~pee~~~~~~~ 53 (84)
T COG3630 23 LFLSILIYAMRGMGAVVRRF--------VPEEVPAPETK 53 (84)
T ss_pred HHHHHHHHHHHHHHHHHHhh--------CCCCCCCcccc
Confidence 45666788999999998887 55667777553
No 11
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=71.07 E-value=2.9 Score=27.90 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=9.7
Q ss_pred hhhhccccccccccCCc-cccC
Q 035711 23 YYLGRARGRQDIRTNPQ-VFGV 43 (82)
Q Consensus 23 YflGr~rGR~E~~t~~Q-vyG~ 43 (82)
.|++--+.||..|.+.+ +||+
T Consensus 16 ~~~~~~~~rRR~r~G~~P~~gt 37 (130)
T PF12273_consen 16 LFLFYCHNRRRRRRGLQPIYGT 37 (130)
T ss_pred HHHHHHHHHHHhhcCCCCcCCc
Confidence 33333334444555644 5554
No 12
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=68.70 E-value=7.2 Score=29.94 Aligned_cols=32 Identities=38% Similarity=0.450 Sum_probs=16.8
Q ss_pred ceEEEehhhHHHHH-HHHHHHhhhhhccccccc
Q 035711 2 GMVVVISLPLILFS-LLLGFGCYYLGRARGRQD 33 (82)
Q Consensus 2 G~vlVISLP~I~f~-llLgfGcYflGr~rGR~E 33 (82)
|+||.|||..-+=| +||++.--++.|.|.|+|
T Consensus 227 G~VVlIslAiALG~v~ll~l~Gii~~~~~r~~~ 259 (281)
T PF12768_consen 227 GFVVLISLAIALGTVFLLVLIGIILAYIRRRRQ 259 (281)
T ss_pred eEEEEEehHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 88999998753322 222333333444444544
No 13
>PRK00523 hypothetical protein; Provisional
Probab=66.65 E-value=2.4 Score=28.00 Aligned_cols=35 Identities=26% Similarity=0.454 Sum_probs=22.0
Q ss_pred EEehhhHHHHHHHHH-HHhhhhhccccccccccCCc
Q 035711 5 VVISLPLILFSLLLG-FGCYYLGRARGRQDIRTNPQ 39 (82)
Q Consensus 5 lVISLP~I~f~llLg-fGcYflGr~rGR~E~~t~~Q 39 (82)
+.+-+=+++++|++| ++-||++|+-=+++++.||+
T Consensus 4 ~~l~I~l~i~~li~G~~~Gffiark~~~k~l~~NPp 39 (72)
T PRK00523 4 IGLALGLGIPLLIVGGIIGYFVSKKMFKKQIRENPP 39 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 334444445555554 46677888877888877764
No 14
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=65.31 E-value=4 Score=26.28 Aligned_cols=28 Identities=25% Similarity=0.653 Sum_probs=20.4
Q ss_pred HHHHHHHHH-HHhhhhhccccccccccCC
Q 035711 11 LILFSLLLG-FGCYYLGRARGRQDIRTNP 38 (82)
Q Consensus 11 ~I~f~llLg-fGcYflGr~rGR~E~~t~~ 38 (82)
+|+++|++| ++-||++|+.=++++..||
T Consensus 2 ~iilali~G~~~Gff~ar~~~~k~l~~NP 30 (64)
T PF03672_consen 2 LIILALIVGAVIGFFIARKYMEKQLKENP 30 (64)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 356677776 4677888888888887775
No 15
>PRK09458 pspB phage shock protein B; Provisional
Probab=63.67 E-value=4.1 Score=27.02 Aligned_cols=33 Identities=24% Similarity=0.522 Sum_probs=21.8
Q ss_pred CceEEEehhhHHHHHHHHHH---Hhhhhhcccccccc
Q 035711 1 MGMVVVISLPLILFSLLLGF---GCYYLGRARGRQDI 34 (82)
Q Consensus 1 MG~vlVISLP~I~f~llLgf---GcYflGr~rGR~E~ 34 (82)
|+ .+++..|+|+|+++++- -+.+..|.+..+..
T Consensus 1 m~-~~fl~~PliiF~ifVaPiWL~LHY~sk~~~~~~L 36 (75)
T PRK09458 1 MS-ALFLAIPLTIFVLFVAPIWLWLHYRSKRQGSQGL 36 (75)
T ss_pred Cc-chHHHHhHHHHHHHHHHHHHHHhhcccccCCCCC
Confidence 56 45678999999998874 34455555554443
No 16
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=63.41 E-value=14 Score=25.54 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhhhhhccccccc
Q 035711 11 LILFSLLLGFGCYYLGRARGRQD 33 (82)
Q Consensus 11 ~I~f~llLgfGcYflGr~rGR~E 33 (82)
++++-+++++..|++--.+-|..
T Consensus 58 ~~~~w~~~A~~ly~~RP~s~R~~ 80 (103)
T PF11027_consen 58 MMMLWMVLAMALYLLRPSSLRSR 80 (103)
T ss_pred HHHHHHHHHHHHHHcCchhhcCC
Confidence 34556778899999876655544
No 17
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=62.37 E-value=2.3 Score=30.54 Aligned_cols=30 Identities=30% Similarity=0.761 Sum_probs=0.9
Q ss_pred ehhhHHHHHHHHHHHhhhhhcccccccccc
Q 035711 7 ISLPLILFSLLLGFGCYYLGRARGRQDIRT 36 (82)
Q Consensus 7 ISLP~I~f~llLgfGcYflGr~rGR~E~~t 36 (82)
|.|=.++|.+||-||||+.=|..|=+-++.
T Consensus 29 IGiL~VILgiLLliGCWYckRRSGYk~L~~ 58 (118)
T PF14991_consen 29 IGILIVILGILLLIGCWYCKRRSGYKTLRD 58 (118)
T ss_dssp SS----------------------------
T ss_pred ceeHHHHHHHHHHHhheeeeecchhhhhhh
Confidence 444456778889999999999888776544
No 18
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=62.28 E-value=9.1 Score=21.85 Aligned_cols=18 Identities=33% Similarity=0.397 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHhhhhhc
Q 035711 10 PLILFSLLLGFGCYYLGR 27 (82)
Q Consensus 10 P~I~f~llLgfGcYflGr 27 (82)
|+++++++.++-++++|+
T Consensus 47 p~~~iL~~~a~is~~~~~ 64 (64)
T smart00831 47 PLIYILLAAAVLSALLGH 64 (64)
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 778888888888888873
No 19
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=61.33 E-value=7 Score=25.77 Aligned_cols=29 Identities=31% Similarity=0.714 Sum_probs=19.0
Q ss_pred ceEEEehhhHH-HHHHHHHHHhhhhhccccc
Q 035711 2 GMVVVISLPLI-LFSLLLGFGCYYLGRARGR 31 (82)
Q Consensus 2 G~vlVISLP~I-~f~llLgfGcYflGr~rGR 31 (82)
|...-|++-.+ ++.+|++|.||||=+ |+|
T Consensus 66 gaiagi~vg~~~~v~~lv~~l~w~f~~-r~k 95 (96)
T PTZ00382 66 GAIAGISVAVVAVVGGLVGFLCWWFVC-RGK 95 (96)
T ss_pred ccEEEEEeehhhHHHHHHHHHhheeEE-eec
Confidence 55566666544 445778899988766 444
No 20
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=60.88 E-value=28 Score=27.87 Aligned_cols=20 Identities=40% Similarity=0.461 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHhhhhhcc
Q 035711 9 LPLILFSLLLGFGCYYLGRA 28 (82)
Q Consensus 9 LP~I~f~llLgfGcYflGr~ 28 (82)
|=+|+|++||++..|-+=+.
T Consensus 159 lf~ii~l~vla~ivY~~~~~ 178 (318)
T PF06682_consen 159 LFWIIFLLVLAFIVYSLFLS 178 (318)
T ss_pred hhhHHHHHHHHHHHHHHHhc
Confidence 34567788888888865443
No 21
>PF13974 YebO: YebO-like protein
Probab=56.62 E-value=4.2 Score=27.21 Aligned_cols=28 Identities=25% Similarity=0.535 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhhhhhccccccccccCCccc
Q 035711 11 LILFSLLLGFGCYYLGRARGRQDIRTNPQVF 41 (82)
Q Consensus 11 ~I~f~llLgfGcYflGr~rGR~E~~t~~Qvy 41 (82)
++++.+++|+-.||| .-|.-+|+|-|++
T Consensus 3 ~~~~~~lv~livWFF---VnRaSvRANEQI~ 30 (80)
T PF13974_consen 3 VSVLVLLVGLIVWFF---VNRASVRANEQIE 30 (80)
T ss_pred ehHHHHHHHHHHHHH---HHHHHHhHHHHHH
Confidence 456677788887777 4577788887764
No 22
>PF05510 Sarcoglycan_2: Sarcoglycan alpha/epsilon; InterPro: IPR008908 Sarcoglycans are a subcomplex of transmembrane proteins which are part of the dystrophin-glycoprotein complex. They are expressed in the skeletal, cardiac and smooth muscle. Although numerous studies have been conducted on the sarcoglycan subcomplex in skeletal and cardiac muscle, the manner of the distribution and localisation of these proteins along the nonjunctional sarcolemma is not clear []. This family contains alpha and epsilon members.; GO: 0016012 sarcoglycan complex
Probab=56.43 E-value=3.1 Score=34.09 Aligned_cols=33 Identities=30% Similarity=0.495 Sum_probs=22.2
Q ss_pred EEehhhHHH-HHHHHHHHhhhhhccccccc--cccC
Q 035711 5 VVISLPLIL-FSLLLGFGCYYLGRARGRQD--IRTN 37 (82)
Q Consensus 5 lVISLP~I~-f~llLgfGcYflGr~rGR~E--~~t~ 37 (82)
+++.+|+++ +.|++.+++-|+||+-|++. .+|+
T Consensus 287 vtl~iPl~i~llL~llLs~Imc~rREG~~~rd~~ts 322 (386)
T PF05510_consen 287 VTLAIPLIIALLLLLLLSYIMCCRREGVKKRDSKTS 322 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHheechHHhhcchhccC
Confidence 456678776 45556677778899988754 4444
No 23
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=54.05 E-value=11 Score=23.69 Aligned_cols=20 Identities=45% Similarity=0.904 Sum_probs=15.2
Q ss_pred eEEEehhhHHHHHHHHHHHhh
Q 035711 3 MVVVISLPLILFSLLLGFGCY 23 (82)
Q Consensus 3 ~vlVISLP~I~f~llLgfGcY 23 (82)
+|+.|-|-+++|.+|+|+ |+
T Consensus 4 ~V~~iilg~~ll~~Ligi-Cw 23 (49)
T PF05624_consen 4 FVVLIILGALLLLLLIGI-CW 23 (49)
T ss_pred EEeHHHHHHHHHHHHHHH-HH
Confidence 567777888888888887 44
No 24
>COG3353 FlaF Putative archaeal flagellar protein F [Cell motility and secretion]
Probab=54.02 E-value=5.2 Score=29.35 Aligned_cols=39 Identities=28% Similarity=0.517 Sum_probs=32.5
Q ss_pred CceEEEehhhHHHHHHHHHHHhhhhhccccccccccCCc
Q 035711 1 MGMVVVISLPLILFSLLLGFGCYYLGRARGRQDIRTNPQ 39 (82)
Q Consensus 1 MG~vlVISLP~I~f~llLgfGcYflGr~rGR~E~~t~~Q 39 (82)
|||-+.+|--.+|.++|++||.-+-.--.+-++++..-|
T Consensus 1 MGFS~svsAaImlis~lV~~gilY~a~~ns~e~V~~An~ 39 (137)
T COG3353 1 MGFSVSVSAAIMLISTLVFFGILYVAYVNSYENVQNANQ 39 (137)
T ss_pred CceeeehHHHHHHHHHHHhhheeeeehhhhhhHHHHHHH
Confidence 999999999999999999999887777777777755433
No 25
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=53.94 E-value=12 Score=24.88 Aligned_cols=16 Identities=44% Similarity=0.754 Sum_probs=12.4
Q ss_pred HHHHHHHHHhhhhhcc
Q 035711 13 LFSLLLGFGCYYLGRA 28 (82)
Q Consensus 13 ~f~llLgfGcYflGr~ 28 (82)
=+-+|+.||||.+++-
T Consensus 41 P~~~Lv~fG~Ysl~~l 56 (91)
T PF08285_consen 41 PFYALVSFGCYSLFTL 56 (91)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3556789999999864
No 26
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=52.71 E-value=15 Score=24.61 Aligned_cols=29 Identities=28% Similarity=0.552 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhhhhhccccccccccCCccc
Q 035711 12 ILFSLLLGFGCYYLGRARGRQDIRTNPQVF 41 (82)
Q Consensus 12 I~f~llLgfGcYflGr~rGR~E~~t~~Qvy 41 (82)
+.++||+...-|.++|.|-|..- .+..+|
T Consensus 44 ~vlTLLIv~~vy~car~r~r~~~-~~~kvY 72 (79)
T PF07213_consen 44 AVLTLLIVLVVYYCARPRRRPTQ-EDDKVY 72 (79)
T ss_pred HHHHHHHHHHHHhhcccccCCcc-cCCEEE
Confidence 67889999999999998877543 333344
No 27
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.45 E-value=6.8 Score=26.00 Aligned_cols=32 Identities=28% Similarity=0.772 Sum_probs=20.8
Q ss_pred ehhhHHHHHHHHH-HHhhhhhccccccccccCC
Q 035711 7 ISLPLILFSLLLG-FGCYYLGRARGRQDIRTNP 38 (82)
Q Consensus 7 ISLP~I~f~llLg-fGcYflGr~rGR~E~~t~~ 38 (82)
+.+=+|.+||+.| +|-||+.|+.=-++...||
T Consensus 5 lail~ivl~ll~G~~~G~fiark~~~k~lk~NP 37 (71)
T COG3763 5 LAILLIVLALLAGLIGGFFIARKQMKKQLKDNP 37 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 3445566666666 4568888877666666664
No 28
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=51.38 E-value=9.4 Score=26.70 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=19.1
Q ss_pred EEEehhhHHHHHHHHHHHhhhh-hc
Q 035711 4 VVVISLPLILFSLLLGFGCYYL-GR 27 (82)
Q Consensus 4 vlVISLP~I~f~llLgfGcYfl-Gr 27 (82)
-+-+.++.+++.+++++|.||. |+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~Y~~~g~ 31 (198)
T PRK10370 7 PVKMLTTLTILMVFLCVGSYLLSPK 31 (198)
T ss_pred chHHHHHHHHHHHHHHHHHHHHcch
Confidence 3456789999999999999984 44
No 29
>PRK15086 ethanolamine utilization protein EutH; Provisional
Probab=50.82 E-value=13 Score=30.73 Aligned_cols=18 Identities=33% Similarity=0.910 Sum_probs=15.7
Q ss_pred hhhHHHHHHHHHHHhhhh
Q 035711 8 SLPLILFSLLLGFGCYYL 25 (82)
Q Consensus 8 SLP~I~f~llLgfGcYfl 25 (82)
=+|.|+||++|++|.|+.
T Consensus 173 L~Piii~~illa~GL~~~ 190 (372)
T PRK15086 173 LIPVIIFAILLALGLKFI 190 (372)
T ss_pred HhHHHHHHHHHHHHHHHH
Confidence 379999999999998875
No 30
>PF09842 DUF2069: Predicted membrane protein (DUF2069); InterPro: IPR018643 This family of prokaryotic proteins has no known function but is thought to be a membrane protein.
Probab=50.17 E-value=12 Score=25.05 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHhhhhhcccccc
Q 035711 10 PLILFSLLLGFGCYYLGRARGRQ 32 (82)
Q Consensus 10 P~I~f~llLgfGcYflGr~rGR~ 32 (82)
=-+++++++=++|-+.-|.||||
T Consensus 86 ~e~~ls~~lF~~~~~y~R~r~re 108 (109)
T PF09842_consen 86 LELLLSVLLFVGAMLYARWRGRE 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34678889999999999999997
No 31
>PF04346 EutH: Ethanolamine utilisation protein, EutH; InterPro: IPR007441 EutH is a bacterial membrane protein whose molecular function is unknown. It has been suggested that it may act as an ethanolamine transporter, responsible for carrying ethanolamine from the periplasm to the cytoplasm [].; GO: 0006810 transport, 0016021 integral to membrane
Probab=49.53 E-value=15 Score=30.15 Aligned_cols=21 Identities=29% Similarity=0.787 Sum_probs=17.7
Q ss_pred ehhhHHHHHHHHHHHhhhhhc
Q 035711 7 ISLPLILFSLLLGFGCYYLGR 27 (82)
Q Consensus 7 ISLP~I~f~llLgfGcYflGr 27 (82)
=-+|.|+||++|++|.|++-+
T Consensus 171 Nl~Pvii~~~lla~GL~~~p~ 191 (354)
T PF04346_consen 171 NLIPVIIFAILLAIGLWFFPE 191 (354)
T ss_pred HHHHHHHHHHHHHHHHHHhHH
Confidence 357999999999999998643
No 32
>KOG4841 consensus Dolichol-phosphate mannosyltransferase, subunit 3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.18 E-value=12 Score=26.15 Aligned_cols=14 Identities=57% Similarity=1.053 Sum_probs=11.5
Q ss_pred HHHHHHHHhhhhhc
Q 035711 14 FSLLLGFGCYYLGR 27 (82)
Q Consensus 14 f~llLgfGcYflGr 27 (82)
|.++|.+|||.+|-
T Consensus 46 ~~~~l~~G~Ya~~t 59 (95)
T KOG4841|consen 46 LYLLLSAGCYALGT 59 (95)
T ss_pred HHHHHHHHhHhhhh
Confidence 36789999999875
No 33
>PF14341 PilX_N: PilX N-terminal
Probab=49.05 E-value=7.1 Score=22.86 Aligned_cols=21 Identities=33% Similarity=0.616 Sum_probs=15.5
Q ss_pred ceEEEehhhHHHHHHHHHHHh
Q 035711 2 GMVVVISLPLILFSLLLGFGC 22 (82)
Q Consensus 2 G~vlVISLP~I~f~llLgfGc 22 (82)
|++||++|=+++.+.+||+..
T Consensus 2 G~aLvvaLi~l~vltll~~~~ 22 (51)
T PF14341_consen 2 GAALVVALIILLVLTLLGVAA 22 (51)
T ss_pred cchHHHHHHHHHHHHHHHHHH
Confidence 788888887777766776654
No 34
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=47.34 E-value=28 Score=27.10 Aligned_cols=26 Identities=35% Similarity=0.317 Sum_probs=20.7
Q ss_pred ehhhHHHHHHHHHHHhhhhhcccccc
Q 035711 7 ISLPLILFSLLLGFGCYYLGRARGRQ 32 (82)
Q Consensus 7 ISLP~I~f~llLgfGcYflGr~rGR~ 32 (82)
.|+=+.++|.|.+|..|+++|.++|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (472)
T PLN02987 3 FSAFLLLLSSLAAIFFLLLRRTRYRR 28 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 46777788999999999999965543
No 35
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=47.18 E-value=7.1 Score=29.23 Aligned_cols=23 Identities=39% Similarity=0.785 Sum_probs=17.5
Q ss_pred ehhhHHHHHHHHHHHhhhhhccc
Q 035711 7 ISLPLILFSLLLGFGCYYLGRAR 29 (82)
Q Consensus 7 ISLP~I~f~llLgfGcYflGr~r 29 (82)
|.+-+.|++||.|+||-+.-|||
T Consensus 14 igi~Ll~lLl~cgiGcvwhwkhr 36 (158)
T PF11770_consen 14 IGISLLLLLLLCGIGCVWHWKHR 36 (158)
T ss_pred HHHHHHHHHHHHhcceEEEeecc
Confidence 45566778888999998876664
No 36
>PF11743 DUF3301: Protein of unknown function (DUF3301); InterPro: IPR021732 This family is conserved in Proteobacteria, but the function is not known.
Probab=47.15 E-value=14 Score=24.25 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhhhhhccccccc
Q 035711 12 ILFSLLLGFGCYYLGRARGRQD 33 (82)
Q Consensus 12 I~f~llLgfGcYflGr~rGR~E 33 (82)
+++.++|+++||++=..|+=+|
T Consensus 2 Ll~llll~~~~~~~w~~~~~~E 23 (97)
T PF11743_consen 2 LLLLLLLALVGWFWWQSRRQRE 23 (97)
T ss_pred HHHHHHHHHHHHHHHHHhhHHH
Confidence 4566677888888888877777
No 37
>PHA03291 envelope glycoprotein I; Provisional
Probab=47.09 E-value=15 Score=30.87 Aligned_cols=42 Identities=26% Similarity=0.550 Sum_probs=28.1
Q ss_pred EEEehhhH-HHHHHHHHHHhhhhhccccccccccCCccccCCCC
Q 035711 4 VVVISLPL-ILFSLLLGFGCYYLGRARGRQDIRTNPQVFGVPAP 46 (82)
Q Consensus 4 vlVISLP~-I~f~llLgfGcYflGr~rGR~E~~t~~QvyG~P~P 46 (82)
++-|.+|+ |+.|++||--.-+|+|--+|+. +.-.|+|-+|.|
T Consensus 288 iiQiAIPasii~cV~lGSC~Ccl~R~~rRr~-r~~~~IY~P~~p 330 (401)
T PHA03291 288 IIQIAIPASIIACVFLGSCACCLHRRCRRRR-RRPARIYRPPSP 330 (401)
T ss_pred hheeccchHHHHHhhhhhhhhhhhhhhhccc-CCcCcccCCCCC
Confidence 35677886 6678888876666776655554 355789976644
No 38
>PF05795 Plasmodium_Vir: Plasmodium vivax Vir protein; InterPro: IPR008780 This family consists of several Vir proteins specific to the genus Plasmodium and Plasmodium vivax in particular. The vir genes are present at about 600-1,000 copies per haploid genome and encode proteins that are immunovariant in natural infections, indicating that they may have a functional role in establishing chronic infection through antigenic variation [].
Probab=44.73 E-value=9.4 Score=27.15 Aligned_cols=28 Identities=36% Similarity=0.711 Sum_probs=16.4
Q ss_pred EEehhhHHHHHHHHHHHhhhhhccccccc
Q 035711 5 VVISLPLILFSLLLGFGCYYLGRARGRQD 33 (82)
Q Consensus 5 lVISLP~I~f~llLgfGcYflGr~rGR~E 33 (82)
.++.+++|+|.|-= ||-++.+|.++|+.
T Consensus 290 ~~~G~~~~~f~LYK-~g~~~~~~~~r~~~ 317 (354)
T PF05795_consen 290 SVLGIPLIFFLLYK-FGSWFNRRRGRRRR 317 (354)
T ss_pred hhHHHHHHHHHHhc-cchhhccccccccc
Confidence 34556666666555 66666666555544
No 39
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=44.43 E-value=9.3 Score=24.78 Aligned_cols=17 Identities=24% Similarity=0.739 Sum_probs=12.8
Q ss_pred EEEehhhHHHHHHHHHH
Q 035711 4 VVVISLPLILFSLLLGF 20 (82)
Q Consensus 4 vlVISLP~I~f~llLgf 20 (82)
..++.+|+|+|+++++.
T Consensus 3 ~~fl~~Pliif~ifVap 19 (75)
T TIGR02976 3 IFFLAIPLIIFVIFVAP 19 (75)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 45788999988776654
No 40
>COG1301 GltP Na+/H+-dicarboxylate symporters [Energy production and conversion]
Probab=44.14 E-value=20 Score=29.34 Aligned_cols=21 Identities=29% Similarity=0.653 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHhhhhhccc
Q 035711 9 LPLILFSLLLGFGCYYLGRAR 29 (82)
Q Consensus 9 LP~I~f~llLgfGcYflGr~r 29 (82)
|+.|+|++++|+++..+|+++
T Consensus 145 Lqil~fail~G~al~~~~~~~ 165 (415)
T COG1301 145 LQILFFAILFGLALAALGEKG 165 (415)
T ss_pred HHHHHHHHHHHHHHHHccccc
Confidence 688999999999999998764
No 41
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=44.13 E-value=30 Score=24.14 Aligned_cols=22 Identities=18% Similarity=0.421 Sum_probs=10.2
Q ss_pred EEEehhhHHHHHHHHHHHhhhhh
Q 035711 4 VVVISLPLILFSLLLGFGCYYLG 26 (82)
Q Consensus 4 vlVISLP~I~f~llLgfGcYflG 26 (82)
.+.|.+.+ ++++..|.|.|||-
T Consensus 21 iiii~~~~-lll~~~g~~~~f~l 42 (170)
T PRK05696 21 IIIIVIGV-LLALGGGGAAWFFM 42 (170)
T ss_pred EeeHHHHH-HHHHHHHHHHHhhh
Confidence 34444443 33344455666554
No 42
>TIGR03349 IV_VI_DotU type IV / VI secretion system protein, DotU family. At least two families of proteins, often encoded by adjacent genes, show sequence similarity due to homology between type IV secretion systems and type VI secretion systems. One is the IcmF family (TIGR03348). The other is the family described by this model. Members include DotU from the Legionella pneumophila type IV secretion system. Many of the members of this protein family from type VI secretion systems have an additional C-terminal domain with OmpA/MotB homology.
Probab=43.09 E-value=7.2 Score=27.69 Aligned_cols=23 Identities=39% Similarity=0.713 Sum_probs=15.1
Q ss_pred hHHHHHHHHHH-Hhhhhhccccccc
Q 035711 10 PLILFSLLLGF-GCYYLGRARGRQD 33 (82)
Q Consensus 10 P~I~f~llLgf-GcYflGr~rGR~E 33 (82)
=++.+||.||| |.|-... .|+++
T Consensus 106 ev~~~cL~LGF~GrYr~~~-~g~~~ 129 (183)
T TIGR03349 106 ELYYLCLSLGFEGKYRVEE-DGREQ 129 (183)
T ss_pred HHHHHHHHCCCCccccCCC-CcHHH
Confidence 36788999998 6666542 35553
No 43
>PLN03207 stomagen; Provisional
Probab=42.37 E-value=41 Score=24.11 Aligned_cols=41 Identities=22% Similarity=0.346 Sum_probs=26.9
Q ss_pred hhhHHHHHHHHHHHhhhhhccccccccccCCccccCCCCCCCcc
Q 035711 8 SLPLILFSLLLGFGCYYLGRARGRQDIRTNPQVFGVPAPPPGTG 51 (82)
Q Consensus 8 SLP~I~f~llLgfGcYflGr~rGR~E~~t~~QvyG~P~PPpg~~ 51 (82)
++++.||++.|-+|-|+.--.|-++ .-+++|+.-+|||-..
T Consensus 12 ~~~lffLl~~llla~~v~qgsr~~~---~~~~~~~~s~~~q~~~ 52 (113)
T PLN03207 12 CLTLFFLLFFLLLGAYVIQGSRNQS---ILPYDQSISYPHQETV 52 (113)
T ss_pred hHHHHHHHHHHHHHHHHHhcccccc---ccCcccccccCchhcc
Confidence 5666666555668888886555443 4477888777776554
No 44
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=42.33 E-value=16 Score=24.06 Aligned_cols=35 Identities=29% Similarity=0.431 Sum_probs=26.7
Q ss_pred ceEEEehhhHHHHHHHHHHHhhhhhcccccccccc
Q 035711 2 GMVVVISLPLILFSLLLGFGCYYLGRARGRQDIRT 36 (82)
Q Consensus 2 G~vlVISLP~I~f~llLgfGcYflGr~rGR~E~~t 36 (82)
+-.++|++=.++.+++|-...|+|==-|.|+.=+.
T Consensus 61 ~~iili~lls~v~IlVily~IyYFVILRer~~~~~ 95 (101)
T PF06024_consen 61 GNIILISLLSFVCILVILYAIYYFVILRERQKSIR 95 (101)
T ss_pred ccchHHHHHHHHHHHHHHhhheEEEEEeccccccc
Confidence 44677888888888888888888888888877434
No 45
>PF15018 InaF-motif: TRP-interacting helix
Probab=42.30 E-value=3.2 Score=24.47 Aligned_cols=16 Identities=25% Similarity=0.467 Sum_probs=11.7
Q ss_pred ceEEEehhhHHHHHHH
Q 035711 2 GMVVVISLPLILFSLL 17 (82)
Q Consensus 2 G~vlVISLP~I~f~ll 17 (82)
|+++-||+++|.|++-
T Consensus 12 ~Yl~~VSl~Ai~LsiY 27 (38)
T PF15018_consen 12 AYLFSVSLAAIVLSIY 27 (38)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566788998887763
No 46
>TIGR03370 PEPCTERM_Roseo variant PEP-CTERM putative exosortase signal, Roseobacter type. A probable protein export sorting signal, PEP-CTERM, was described by Haft, et al. (PubMed:16930487). It is predicted to interact with a putative transpeptidase we designate exosortase. Most examples of this signal are recognized by model TIGR02595, but some unusual clades require different models. This model describes a variant with conserved motif VPLPA, rather than VPEP. This variant is found prominently in two members of the Rhodobacterales, namely Jannaschia sp. CCS1 and Roseobacter denitrificans OCh 114. One interesting member protein has a full-length duplication and therefore two copies of this putative sorting domain.
Probab=42.15 E-value=20 Score=19.75 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=17.1
Q ss_pred ehhhHHHHHHHHHHHhhhhhccc
Q 035711 7 ISLPLILFSLLLGFGCYYLGRAR 29 (82)
Q Consensus 7 ISLP~I~f~llLgfGcYflGr~r 29 (82)
|.+|+-..+|+.|+|-..+-|.|
T Consensus 1 VPlPA~~~LLl~gLggl~~~rRR 23 (26)
T TIGR03370 1 VPLPAGALLLLAGLGGLGAMRRR 23 (26)
T ss_pred CCCcchHHHHHHHHHHHHHHHHh
Confidence 56888899999999766554443
No 47
>PRK01253 preprotein translocase subunit SecG; Reviewed
Probab=41.74 E-value=27 Score=21.49 Aligned_cols=18 Identities=39% Similarity=0.573 Sum_probs=14.4
Q ss_pred eEEEehhhHHHHHHHHHH
Q 035711 3 MVVVISLPLILFSLLLGF 20 (82)
Q Consensus 3 ~vlVISLP~I~f~llLgf 20 (82)
.|+++|+-||.++++|-+
T Consensus 33 ~Vi~~~~~~~~~v~~L~~ 50 (54)
T PRK01253 33 TVIAIGLALGIFVLVLNA 50 (54)
T ss_pred eeeeeHHHHHHHHHHHHh
Confidence 378899999998888754
No 48
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=40.66 E-value=35 Score=24.17 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=19.4
Q ss_pred hhhHHHHHHHHHHHhhhhhcccccc
Q 035711 8 SLPLILFSLLLGFGCYYLGRARGRQ 32 (82)
Q Consensus 8 SLP~I~f~llLgfGcYflGr~rGR~ 32 (82)
.+-+++++++.++.+|++=|.|-|+
T Consensus 18 ~i~~iI~v~V~~~l~~~~~k~r~~~ 42 (201)
T TIGR02866 18 AVATTISLLVAALLAYVVWKFRRKG 42 (201)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccc
Confidence 4556788888889999988888653
No 49
>COG3029 FrdC Fumarate reductase subunit C [Energy production and conversion]
Probab=39.44 E-value=30 Score=25.28 Aligned_cols=20 Identities=40% Similarity=0.768 Sum_probs=17.8
Q ss_pred hhhHHHHHHHHHHHhhhhhc
Q 035711 8 SLPLILFSLLLGFGCYYLGR 27 (82)
Q Consensus 8 SLP~I~f~llLgfGcYflGr 27 (82)
++|++.|||.|-+|..-+|+
T Consensus 32 ~ip~vwF~l~Li~gl~al~~ 51 (129)
T COG3029 32 AIPAVWFSLELIYGLFALGS 51 (129)
T ss_pred hHHHHHHHHHHHHHHHHHcc
Confidence 78999999999999888875
No 50
>PF10265 DUF2217: Uncharacterized conserved protein (DUF2217); InterPro: IPR019392 This is a family of conserved proteins varying in length from 500-600 residues. Their function is not known.
Probab=38.98 E-value=48 Score=28.40 Aligned_cols=34 Identities=29% Similarity=0.436 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhhhhccccccccccCCccccCCCCCC
Q 035711 13 LFSLLLGFGCYYLGRARGRQDIRTNPQVFGVPAPPP 48 (82)
Q Consensus 13 ~f~llLgfGcYflGr~rGR~E~~t~~QvyG~P~PPp 48 (82)
+-..+|++...+|.|.|||+. -++-+.+++.|.+
T Consensus 23 ~g~v~l~~lA~~lkRRr~kkk--~~~~~~~~~r~~s 56 (514)
T PF10265_consen 23 VGVVSLIFLAHYLKRRRRKKK--WGPGHLGTPRPSS 56 (514)
T ss_pred HHHHHHHHHHHHHHHhhcccc--ccccccccCCChh
Confidence 344567888999999999988 2333445555543
No 51
>PF15102 TMEM154: TMEM154 protein family
Probab=38.87 E-value=20 Score=26.18 Aligned_cols=30 Identities=27% Similarity=0.363 Sum_probs=20.5
Q ss_pred eEEEehhhHHHHHHHHHHHhhhhhcccccc
Q 035711 3 MVVVISLPLILFSLLLGFGCYYLGRARGRQ 32 (82)
Q Consensus 3 ~vlVISLP~I~f~llLgfGcYflGr~rGR~ 32 (82)
||++=++-+++++|++.+..+..=|+|-++
T Consensus 60 mIlIP~VLLvlLLl~vV~lv~~~kRkr~K~ 89 (146)
T PF15102_consen 60 MILIPLVLLVLLLLSVVCLVIYYKRKRTKQ 89 (146)
T ss_pred EEeHHHHHHHHHHHHHHHheeEEeecccCC
Confidence 788888888777666677776665544433
No 52
>TIGR02595 PEP_exosort PEP-CTERM putative exosortase interaction domain. This model describes a 25-residue domain that includes a near-invariant Pro-Glu-Pro (PEP) motif, a thirteen residue strongly hydrophobic sequence likely to span the membrane, and a five-residue strongly basic motif that often contains four Arg residues. In nearly every case, this motif is found within nine residues, and usually within five residues, of the extreme C-terminus of the protein. Proteins with this motif typically have signal sequences at the N-terminus. This region appears many times per genome or not at all, and co-occurs in genomes with a proposed protein-sorting integral membrane protein we designate exosortase (see TIGR02602). PEP-CTERM proteins frequently are poorly conserved, Ser/Thr-rich proteins and may become extensively modified proteinaceous constituents of extracellular material in bacterial biofilms.
Probab=38.15 E-value=36 Score=17.86 Aligned_cols=20 Identities=50% Similarity=0.783 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHhhhhhccc
Q 035711 10 PLILFSLLLGFGCYYLGRAR 29 (82)
Q Consensus 10 P~I~f~llLgfGcYflGr~r 29 (82)
|-.++.++++.++..+-|.|
T Consensus 4 Pstl~ll~~g~~~~~~rrrk 23 (26)
T TIGR02595 4 PSTLLLLLLGLGFLLLRRRR 23 (26)
T ss_pred chHHHHHHHHHHHHHHhhcc
Confidence 44556666666666555543
No 53
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=38.08 E-value=9 Score=24.25 Aligned_cols=25 Identities=16% Similarity=-0.075 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHhhhhhcccccccc
Q 035711 10 PLILFSLLLGFGCYYLGRARGRQDI 34 (82)
Q Consensus 10 P~I~f~llLgfGcYflGr~rGR~E~ 34 (82)
-.++++|++.+...++.|+++++..
T Consensus 8 ~g~~~ll~~v~~~~~~~rr~~~~~~ 32 (75)
T PF14575_consen 8 VGVLLLLVLVIIVIVCFRRCKYSKA 32 (75)
T ss_dssp HHHHHHHHHHHHHHCCCTT------
T ss_pred HHHHHHHHhheeEEEEEeeEcCCCC
Confidence 3344455455556666777765543
No 54
>PRK10781 rcsF outer membrane lipoprotein; Reviewed
Probab=37.78 E-value=58 Score=23.34 Aligned_cols=16 Identities=50% Similarity=1.020 Sum_probs=9.0
Q ss_pred hhHHHHHHHHHHHhhhh
Q 035711 9 LPLILFSLLLGFGCYYL 25 (82)
Q Consensus 9 LP~I~f~llLgfGcYfl 25 (82)
||+.||.|+| -||..|
T Consensus 4 l~~~LL~L~L-sGCS~l 19 (133)
T PRK10781 4 LPICLLALML-TGCSML 19 (133)
T ss_pred HHHHHHHHHH-hhcccc
Confidence 4555555444 488765
No 55
>PRK02919 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=37.67 E-value=7.9 Score=25.38 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=11.5
Q ss_pred ceEEEehhhHHHHHHHHHHHhhhhhccccc
Q 035711 2 GMVVVISLPLILFSLLLGFGCYYLGRARGR 31 (82)
Q Consensus 2 G~vlVISLP~I~f~llLgfGcYflGr~rGR 31 (82)
||.+| |+|++||+ ++.=+..|-..|
T Consensus 17 GMg~V----fvFL~lLI-~~i~~ms~l~~~ 41 (82)
T PRK02919 17 GMGFV----LAFLFLLI-FAIRGMSALINR 41 (82)
T ss_pred HHHHH----HHHHHHHH-HHHHHHHHHHHh
Confidence 55554 55555443 344444444433
No 56
>PF06553 BNIP3: BNIP3; InterPro: IPR010548 This family consists of several mammalian specific BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 or BNIP3 sequences. BNIP3 belongs to the Bcl-2 homology 3 (BH3)-only family, a Bcl-2-related family possessing an atypical Bcl-2 homology 3 (BH3) domain, which regulates PCD from mitochondrial sites by selective Bcl-2/Bcl-XL interactions. BNIP3 family members contain a C-terminal transmembrane domain that is required for their mitochondrial localisation, homodimerisation, as well as regulation of their pro-apoptotic activities. BNIP3-mediated apoptosis has been reported to be independent of caspase activation and cytochrome c release and is characterised by early plasma membrane and mitochondrial damage, prior to the appearance of chromatin condensation or DNA fragmentation [].; GO: 0043065 positive regulation of apoptosis, 0005740 mitochondrial envelope, 0016021 integral to membrane; PDB: 2KA1_B 2KA2_A 2J5D_A.
Probab=37.53 E-value=19 Score=27.35 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=16.8
Q ss_pred EehhhHHHHHHHHHHHhhhhhcccccccc
Q 035711 6 VISLPLILFSLLLGFGCYYLGRARGRQDI 34 (82)
Q Consensus 6 VISLP~I~f~llLgfGcYflGr~rGR~E~ 34 (82)
.+=||-+|+++|||+|.. =++|||-+
T Consensus 165 ~~flpslllS~lL~~GlG---iyIgkRl~ 190 (197)
T PF06553_consen 165 KVFLPSLLLSHLLGLGLG---IYIGKRLA 190 (197)
T ss_dssp HTTHHHHHHHHHHHHHHH---HHHHHHHC
T ss_pred HHHhHHHHHHHHHhcccE---EEEecccc
Confidence 345788888888887753 34555543
No 57
>MTH00060 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=35.73 E-value=25 Score=24.23 Aligned_cols=27 Identities=22% Similarity=0.323 Sum_probs=21.8
Q ss_pred eEEEehhhHHHHHHHHHHHhhhhhccc
Q 035711 3 MVVVISLPLILFSLLLGFGCYYLGRAR 29 (82)
Q Consensus 3 ~vlVISLP~I~f~llLgfGcYflGr~r 29 (82)
|.+++|.-++++.+++....|.+|-..
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (116)
T MTH00060 1 MLVLLFVFFVFFLLFLVIYFFHSGLWN 27 (116)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 667888999999998888888877543
No 58
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=35.67 E-value=42 Score=19.15 Aligned_cols=18 Identities=11% Similarity=0.408 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhhhhhcc
Q 035711 11 LILFSLLLGFGCYYLGRA 28 (82)
Q Consensus 11 ~I~f~llLgfGcYflGr~ 28 (82)
++++.+.+|+..|.+-++
T Consensus 16 v~~~~~F~gi~~w~~~~~ 33 (49)
T PF05545_consen 16 VLFFVFFIGIVIWAYRPR 33 (49)
T ss_pred HHHHHHHHHHHHHHHccc
Confidence 345555667777777544
No 59
>PRK04987 fumarate reductase subunit C; Provisional
Probab=35.38 E-value=38 Score=24.41 Aligned_cols=20 Identities=35% Similarity=0.708 Sum_probs=17.5
Q ss_pred hhhHHHHHHHHHHHhhhhhc
Q 035711 8 SLPLILFSLLLGFGCYYLGR 27 (82)
Q Consensus 8 SLP~I~f~llLgfGcYflGr 27 (82)
|+|.++||++|-+|..-|++
T Consensus 33 ~v~~~~f~lvLl~Gl~~L~~ 52 (130)
T PRK04987 33 AVPAVWFSLVLIYGLFALKN 52 (130)
T ss_pred HHHHHHHHHHHHHHHHHHcc
Confidence 78999999999999887765
No 60
>COG3192 EutH Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=35.35 E-value=18 Score=30.38 Aligned_cols=29 Identities=28% Similarity=0.706 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHhhhhhccccccccccCCcccc
Q 035711 9 LPLILFSLLLGFGCYYLGRARGRQDIRTNPQVFG 42 (82)
Q Consensus 9 LP~I~f~llLgfGcYflGr~rGR~E~~t~~QvyG 42 (82)
+|.|+||+|+++|.+|.- +.|-|+=|+||
T Consensus 185 ~p~~i~a~lia~GL~~~~-----e~Mi~gF~iFg 213 (389)
T COG3192 185 IPVIIVAVLIALGLKFIP-----EKMITGFQIFG 213 (389)
T ss_pred hHHHHHHHHHHhhhhhch-----HhHhHHHHHHH
Confidence 689999999999998742 22556667766
No 61
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=35.16 E-value=33 Score=24.00 Aligned_cols=15 Identities=20% Similarity=0.344 Sum_probs=7.6
Q ss_pred HHhhhhhcccccccc
Q 035711 20 FGCYYLGRARGRQDI 34 (82)
Q Consensus 20 fGcYflGr~rGR~E~ 34 (82)
|-.|+++|.|-|...
T Consensus 83 li~y~irR~~Kk~~~ 97 (122)
T PF01102_consen 83 LISYCIRRLRKKSSS 97 (122)
T ss_dssp HHHHHHHHHS-----
T ss_pred HHHHHHHHHhccCCC
Confidence 457888888877553
No 62
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=34.73 E-value=27 Score=21.34 Aligned_cols=16 Identities=38% Similarity=0.656 Sum_probs=12.3
Q ss_pred HHHhhhhhcccccccc
Q 035711 19 GFGCYYLGRARGRQDI 34 (82)
Q Consensus 19 gfGcYflGr~rGR~E~ 34 (82)
...+|++||+-||++.
T Consensus 31 ~~~~y~lgr~~~~~~~ 46 (123)
T PF09335_consen 31 SLLAYLLGRYFGRRRL 46 (123)
T ss_pred HHHHHHHHHHHhHHHH
Confidence 4568999999996553
No 63
>PRK14221 camphor resistance protein CrcB; Provisional
Probab=34.26 E-value=35 Score=23.16 Aligned_cols=21 Identities=38% Similarity=0.689 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHH-Hhhhhhccc
Q 035711 9 LPLILFSLLLGF-GCYYLGRAR 29 (82)
Q Consensus 9 LP~I~f~llLgf-GcYflGr~r 29 (82)
+=-+++++++|+ +++.+||||
T Consensus 102 ~~y~~~s~~~gl~~~~~~~~~~ 123 (124)
T PRK14221 102 ILYLLLSIGGGLLLAYYLGRKK 123 (124)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc
Confidence 335678888898 588999986
No 64
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=34.22 E-value=58 Score=23.52 Aligned_cols=22 Identities=18% Similarity=0.372 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhhhhhcccccc
Q 035711 11 LILFSLLLGFGCYYLGRARGRQ 32 (82)
Q Consensus 11 ~I~f~llLgfGcYflGr~rGR~ 32 (82)
+++++++.|++.|||......+
T Consensus 27 ~llll~~~G~~~~~~~~~~~~~ 48 (182)
T PRK08455 27 VVLLLLIVGVIAMLLMGSKEEE 48 (182)
T ss_pred HHHHHHHHHHHHHHHhcCCCcc
Confidence 3344444467788886544433
No 65
>PF00672 HAMP: HAMP domain; InterPro: IPR003660 The HAMP linker domain (present in Histidine kinases, Adenyl cyclases, Methyl-accepting proteins and Phosphatases) is an approximately 50-amino acid alpha-helical region. It is found in bacterial sensor and chemotaxis proteins and in eukaryotic histidine kinases. The bacterial proteins are usually integral membrane proteins and part of a two-component signal transduction pathway. One or several copies of the HAMP domain can be found in association with other domains, such as the histidine kinase domain, the bacterial chemotaxis sensory transducer domain, the PAS repeat, the EAL domain, the GGDEF domain, the protein phosphatase 2C-like domain, the guanylate cyclase domain, or the response regulatory domain. It has been suggested that the HAMP domain possesses a role of regulating the phosphorylation or methylation of homodimeric receptors by transmitting the conformational changes in periplasmic ligand-binding domains to cytoplasmic signalling kinase and methyl-acceptor domains.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016021 integral to membrane; PDB: 3PJX_A 3PJW_A 3ZX6_B 2Y20_B 2Y0Q_D 2Y21_H 3ZRW_C 2L7H_B 2LFS_B 2L7I_B ....
Probab=34.02 E-value=48 Score=18.42 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhhhhhccccc
Q 035711 11 LILFSLLLGFGCYYLGRARGR 31 (82)
Q Consensus 11 ~I~f~llLgfGcYflGr~rGR 31 (82)
+++.+++..+.+|++.|..-|
T Consensus 5 ~~~~~~~~~~~~~~~~~~i~~ 25 (70)
T PF00672_consen 5 FLIILLLSLLLAWLLARRITR 25 (70)
T ss_dssp HHHHHHHHHHHHHH--HTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445556666677888877665
No 66
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=33.75 E-value=23 Score=24.20 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhhhhhcccccccc
Q 035711 12 ILFSLLLGFGCYYLGRARGRQDI 34 (82)
Q Consensus 12 I~f~llLgfGcYflGr~rGR~E~ 34 (82)
++..+++|.|.|||+.+.+.++-
T Consensus 13 l~~l~~~g~~~~~~~~~~~~~~~ 35 (142)
T PRK07718 13 LIVIALIGTAALVLVMGFSEAKK 35 (142)
T ss_pred HHHHHHHHHHHHhhhcccCCccc
Confidence 33445567788888887766654
No 67
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=33.74 E-value=34 Score=24.66 Aligned_cols=19 Identities=32% Similarity=0.450 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhhhhhccc
Q 035711 11 LILFSLLLGFGCYYLGRAR 29 (82)
Q Consensus 11 ~I~f~llLgfGcYflGr~r 29 (82)
+.+-++++.||+.+|||..
T Consensus 40 L~Ls~vvlvi~~~LLgrsi 58 (125)
T PF15048_consen 40 LALSFVVLVISFFLLGRSI 58 (125)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3456778888999999864
No 68
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=33.36 E-value=1.4e+02 Score=22.41 Aligned_cols=57 Identities=28% Similarity=0.421 Sum_probs=29.8
Q ss_pred EEehhhHHHHHHHH--HHHhhhhhccccccc--cccC--CccccCCCCCCCcccCcccccCCCC
Q 035711 5 VVISLPLILFSLLL--GFGCYYLGRARGRQD--IRTN--PQVFGVPAPPPGTGSEATTFTYPSS 62 (82)
Q Consensus 5 lVISLP~I~f~llL--gfGcYflGr~rGR~E--~~t~--~QvyG~P~PPpg~~~a~~~f~~pss 62 (82)
+|.++=||+..+.- .--|+...++||-|- ++|+ .|+=.-|.+||.- ..+..-.|++.
T Consensus 66 IVfgiVfimgvva~i~icvCmc~kn~rgsRvgv~~tt~in~v~SyP~apPpy-sy~~e~~~~~d 128 (155)
T PF10873_consen 66 IVFGIVFIMGVVAGIAICVCMCMKNSRGSRVGVIRTTHINAVSSYPAAPPPY-SYDHEMEYPPD 128 (155)
T ss_pred eehhhHHHHHHHHHHHHHHhhhhhcCCCccccceeccccccccccCCCCCCc-cccccccccCC
Confidence 34555555444322 234788888888654 4555 4555666544422 24444445543
No 69
>PF11884 DUF3404: Domain of unknown function (DUF3404); InterPro: IPR021821 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 260 amino acids in length. This domain is found associated with PF02518 from PFAM, PF00512 from PFAM.
Probab=33.31 E-value=11 Score=29.56 Aligned_cols=28 Identities=32% Similarity=0.566 Sum_probs=16.4
Q ss_pred EehhhHHHHHHHHHHHhhhhhccccccccc
Q 035711 6 VISLPLILFSLLLGFGCYYLGRARGRQDIR 35 (82)
Q Consensus 6 VISLP~I~f~llLgfGcYflGr~rGR~E~~ 35 (82)
+|+|-+|.++|++|-+.|. |++-|+|||
T Consensus 235 ~i~L~~~~i~l~~gw~~y~--~~~krre~r 262 (262)
T PF11884_consen 235 MIALVLANILLVLGWSLYR--WNQKRREMR 262 (262)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHhcC
Confidence 3455555666666666665 455567764
No 70
>PRK01844 hypothetical protein; Provisional
Probab=33.26 E-value=28 Score=22.97 Aligned_cols=29 Identities=17% Similarity=0.313 Sum_probs=18.9
Q ss_pred HHHHHHHHH-HHhhhhhccccccccccCCc
Q 035711 11 LILFSLLLG-FGCYYLGRARGRQDIRTNPQ 39 (82)
Q Consensus 11 ~I~f~llLg-fGcYflGr~rGR~E~~t~~Q 39 (82)
+++++|++| ++-||++|+-=+++++.||.
T Consensus 9 l~I~~li~G~~~Gff~ark~~~k~lk~NPp 38 (72)
T PRK01844 9 VGVVALVAGVALGFFIARKYMMNYLQKNPP 38 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 334444444 56677888877778877764
No 71
>PRK13603 fumarate reductase subunit C; Provisional
Probab=33.10 E-value=44 Score=24.05 Aligned_cols=20 Identities=20% Similarity=0.187 Sum_probs=17.9
Q ss_pred hhhHHHHHHHHHHHhhhhhc
Q 035711 8 SLPLILFSLLLGFGCYYLGR 27 (82)
Q Consensus 8 SLP~I~f~llLgfGcYflGr 27 (82)
|+|.++||++|-+|..-|++
T Consensus 29 ~v~~~~f~lvLl~Gl~~L~~ 48 (126)
T PRK13603 29 CIFVAWFVLYLVLVLRAVGA 48 (126)
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 78999999999999888876
No 72
>cd00546 QFR_TypeD_subunitC Quinol:fumarate reductase (QFR) Type D subfamily, 15kD hydrophobic subunit C; QFR couples the reduction of fumarate to succinate to the oxidation of quinol to quinone, the opposite reaction to that catalyzed by the related protein, succinate:quinine oxidoreductase (SQR). QFRs oxidize low potential quinols such as menaquinol and are involved in anaerobic respiration with fumarate as the terminal electron acceptor. SQR and QFR share a common subunit arrangement, composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type D as they contain two transmembrane subunits (C and D) and no heme groups. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers, and the transmembrane subunit containing the electron donor (quinol). The quinone binding site resides in the transmembrane subunits.
Probab=32.42 E-value=46 Score=23.82 Aligned_cols=20 Identities=40% Similarity=0.828 Sum_probs=17.7
Q ss_pred hhhHHHHHHHHHHHhhhhhc
Q 035711 8 SLPLILFSLLLGFGCYYLGR 27 (82)
Q Consensus 8 SLP~I~f~llLgfGcYflGr 27 (82)
|+|.+.||++|-+|..-|++
T Consensus 29 ~v~~~~f~lvLl~Gl~~L~~ 48 (124)
T cd00546 29 AVPTVWFSLVLLYGLFALGS 48 (124)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 78999999999999887775
No 73
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=32.32 E-value=28 Score=26.61 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhhhhhcccccccc
Q 035711 12 ILFSLLLGFGCYYLGRARGRQDI 34 (82)
Q Consensus 12 I~f~llLgfGcYflGr~rGR~E~ 34 (82)
++..|++-+..|++||.+.|+-+
T Consensus 10 ~l~~l~~y~~~y~~G~~~N~~~A 32 (321)
T PF07946_consen 10 FLAFLLLYVVNYFIGKSKNRRIA 32 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566778999998887653
No 74
>PHA03290 envelope glycoprotein I; Provisional
Probab=32.05 E-value=57 Score=27.15 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=26.5
Q ss_pred ceEEEehhhHHHHHHHHHHHhhhhhccccc
Q 035711 2 GMVVVISLPLILFSLLLGFGCYYLGRARGR 31 (82)
Q Consensus 2 G~vlVISLP~I~f~llLgfGcYflGr~rGR 31 (82)
++++||++-.+++.||.-+|.-..|-.|-|
T Consensus 272 ~~~ivipi~~~llilla~i~~i~~~~~Rr~ 301 (357)
T PHA03290 272 NFLIAIPITASLLIILAIIIVITIGIKRRR 301 (357)
T ss_pred eEEEEehHHHHHHHHHHHHHHHHhhhhhhh
Confidence 578999999999999999999999977766
No 75
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=31.97 E-value=40 Score=19.97 Aligned_cols=29 Identities=21% Similarity=0.395 Sum_probs=21.1
Q ss_pred EEehhhHHHHHHHHHHHhhhhhccccccc
Q 035711 5 VVISLPLILFSLLLGFGCYYLGRARGRQD 33 (82)
Q Consensus 5 lVISLP~I~f~llLgfGcYflGr~rGR~E 33 (82)
+++-+|.-++..+++++.++.+-+.|.=|
T Consensus 3 l~~lip~sl~l~~~~l~~f~Wavk~GQfd 31 (45)
T PF03597_consen 3 LYILIPVSLILGLIALAAFLWAVKSGQFD 31 (45)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 45667777777778888888887777543
No 76
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=31.13 E-value=16 Score=23.56 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=0.0
Q ss_pred ehhhHHHHHHHHHHHhhhhhccc
Q 035711 7 ISLPLILFSLLLGFGCYYLGRAR 29 (82)
Q Consensus 7 ISLP~I~f~llLgfGcYflGr~r 29 (82)
|.+-+++.+++|+||+.-+++..
T Consensus 14 ~~~~iv~~~~~l~~~~~~~~~~~ 36 (154)
T PF13624_consen 14 ILIGIVLAIFVLAFGIGGCGSGS 36 (154)
T ss_dssp -----------------------
T ss_pred hhHHHHHHHHHHHHHHHHHhccC
Confidence 33444555555666666655543
No 77
>PF10060 DUF2298: Uncharacterized membrane protein (DUF2298); InterPro: IPR018746 Members of this highly hydrophobic probable integral membrane family belong to two classes. In one, a single copy of the region modelled by the signatures in this entry represents essentially the full length of a strongly hydrophobic protein of about 700 to 900 residues (variable because of long inserts in some). The domain architecture of the other class consists of an additional N-terminal region, two copies of the region represented by this model, and three to four repeats of TPR, or tetratricopeptide repeat. The unusual species range includes several Archaea, several Chloroflexi, and Clostridium phytofermentans. An unusual motif YYYxG is present. The function is unknown.
Probab=31.09 E-value=30 Score=28.22 Aligned_cols=25 Identities=36% Similarity=0.677 Sum_probs=16.9
Q ss_pred EehhhHHHHHHHHHHHhhhhhcccc
Q 035711 6 VISLPLILFSLLLGFGCYYLGRARG 30 (82)
Q Consensus 6 VISLP~I~f~llLgfGcYflGr~rG 30 (82)
|||+|+.++.+.+++..|.-.+.+.
T Consensus 240 via~pf~Ll~l~l~~~~~~~~~~~~ 264 (473)
T PF10060_consen 240 VIAIPFLLLALALALALYRRPRSRR 264 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccc
Confidence 5788988887777776665444443
No 78
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=31.02 E-value=46 Score=24.46 Aligned_cols=30 Identities=17% Similarity=0.391 Sum_probs=23.9
Q ss_pred EEEehhhHHHHHHHHHHHhhhhhcccccccc
Q 035711 4 VVVISLPLILFSLLLGFGCYYLGRARGRQDI 34 (82)
Q Consensus 4 vlVISLP~I~f~llLgfGcYflGr~rGR~E~ 34 (82)
-.+++|-+|.|.|++.+.+.+||+.- |+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 33 (331)
T PRK03598 4 KVVIGLAVVVLAAAVAGGWWWYQSRQ-DNGL 33 (331)
T ss_pred eEEEEhHHHHHHHHHHHheeEeeecC-Ccce
Confidence 46889999999998888888888865 5554
No 79
>TIGR03153 cytochr_NrfH cytochrome c nitrate reductase, small subunit. Members of this protein family are NrfH, a tetraheme cytochrome c. NrfH is the cytochrome c nitrate reductase small subunit, and forms a heterodimer with NrfA, the catalytic subunit. While NrfA can act as a monomer, NrfH can bind to and anchor NrfA in the membrane and enables electron transfer to NrfA from quinones.
Probab=30.93 E-value=24 Score=23.99 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhhhhhccccccc
Q 035711 12 ILFSLLLGFGCYYLGRARGRQD 33 (82)
Q Consensus 12 I~f~llLgfGcYflGr~rGR~E 33 (82)
|+..+++|++.|+++-..|=.+
T Consensus 2 ~~~g~~~g~~~~~~~~~~~~~~ 23 (135)
T TIGR03153 2 VIVGVALGVGAYAFYYAKGLSY 23 (135)
T ss_pred chhHHHHHHHHHHHHHHHHHhh
Confidence 4566778888887765444444
No 80
>COG1807 ArnT 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]
Probab=30.74 E-value=41 Score=26.39 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=22.7
Q ss_pred ehhhHHHHHHHHHHHhhhhhcccccc
Q 035711 7 ISLPLILFSLLLGFGCYYLGRARGRQ 32 (82)
Q Consensus 7 ISLP~I~f~llLgfGcYflGr~rGR~ 32 (82)
+-||..+.+++..+.+|.+||..+|+
T Consensus 86 ~rl~~~l~~~~~~~l~y~l~k~l~~~ 111 (535)
T COG1807 86 ARLPSALAGALTALLVYWLAKRLFGR 111 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45788888889999999999988887
No 81
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=30.48 E-value=36 Score=23.53 Aligned_cols=21 Identities=14% Similarity=0.382 Sum_probs=10.7
Q ss_pred hhHHHHHHHHHHHhhhhhccc
Q 035711 9 LPLILFSLLLGFGCYYLGRAR 29 (82)
Q Consensus 9 LP~I~f~llLgfGcYflGr~r 29 (82)
++.|++.+++...+||+-|..
T Consensus 3 ~~~il~~vv~~~i~yf~iRPQ 23 (113)
T PRK06531 3 IPTIIMFVVMLGLIFFMQRQQ 23 (113)
T ss_pred hHHHHHHHHHHHHHHheechH
Confidence 445544444443467776543
No 82
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=29.68 E-value=26 Score=28.50 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=17.6
Q ss_pred ehhhHHHHHHHHHHHhhhhhcc
Q 035711 7 ISLPLILFSLLLGFGCYYLGRA 28 (82)
Q Consensus 7 ISLP~I~f~llLgfGcYflGr~ 28 (82)
+++-+|++.+.+|-|.|++++.
T Consensus 39 l~~~aili~la~g~g~y~~~~q 60 (390)
T PRK10920 39 LSAVAIAIALAAGAGLYYHGKQ 60 (390)
T ss_pred HHHHHHHHHHHHhhHHHHHHHH
Confidence 5677888888888999999763
No 83
>PF02398 Corona_7: Coronavirus protein 7; InterPro: IPR003449 This is a family of proteins from Coronavirus, which may function in the formation of membrane-bound replication complexes or in viral assembly.
Probab=29.62 E-value=42 Score=23.64 Aligned_cols=14 Identities=57% Similarity=1.277 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhhhh
Q 035711 12 ILFSLLLGFGCYYL 25 (82)
Q Consensus 12 I~f~llLgfGcYfl 25 (82)
.+|.++|||-||-+
T Consensus 83 viFlvlL~f~cy~l 96 (101)
T PF02398_consen 83 VIFLVLLGFCCYRL 96 (101)
T ss_pred HHHHHHHHHHHHHH
Confidence 56788899999954
No 84
>KOG3457 consensus Sec61 protein translocation complex, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=29.57 E-value=34 Score=23.54 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=13.9
Q ss_pred EEEehhhHHHHHHHHHH
Q 035711 4 VVVISLPLILFSLLLGF 20 (82)
Q Consensus 4 vlVISLP~I~f~llLgf 20 (82)
|||.|+=||++.++|=+
T Consensus 63 VLvmSvgFIasV~~LHi 79 (88)
T KOG3457|consen 63 VLVMSVGFIASVFALHI 79 (88)
T ss_pred ehhhhHHHHHHHHHHHH
Confidence 68889999998887744
No 85
>PF10541 KASH: Nuclear envelope localisation domain; InterPro: IPR012315 The KASH (Klarsicht/ANC-1/Syne-1 homology), or KLS domain is a highly hydrophobic nuclear envelope localization domain of approximately 60 amino acids comprising a 20-amino-acid transmembrane region and a 30-35-residue C-terminal region that lies between the inner and the outer nuclear membranes. The KASH domain is found in association with other domains, such as spectrin repeats and CH, at the C terminus of proteins tethered to the nuclear membrane in diverse cell types [, , , , ]. Some proteins known to contain a KASH domain are listed below: Caenorhabditis elegans nuclear anchorage protein 1 (ANC-1). Drosophila Klarsicht (Klar), a protein associated with nuclei and required for a subset of nuclear migrations. Drosophila MSP-300. Vetebrate nesprin-1 and -2 (also known as Syne-1 and -2). They are associated with emerin and lamin A at the nuclear envelope of muscle cells and other cell types. ; GO: 0003779 actin binding, 0016021 integral to membrane; PDB: 4DXS_B 4DXR_B.
Probab=29.53 E-value=18 Score=22.98 Aligned_cols=22 Identities=45% Similarity=0.785 Sum_probs=0.0
Q ss_pred EEEehhhH-HHHHHHHHHHhhhh
Q 035711 4 VVVISLPL-ILFSLLLGFGCYYL 25 (82)
Q Consensus 4 vlVISLP~-I~f~llLgfGcYfl 25 (82)
|+-.+||+ ++|.++++++|.+=
T Consensus 5 v~r~alplqlllllll~~a~LlP 27 (58)
T PF10541_consen 5 VLRAALPLQLLLLLLLGAACLLP 27 (58)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC
Confidence 45578898 55666677777663
No 86
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=29.40 E-value=18 Score=25.53 Aligned_cols=26 Identities=27% Similarity=0.120 Sum_probs=0.0
Q ss_pred ehhhHHHHHHHHHHHhhhhhcccccc
Q 035711 7 ISLPLILFSLLLGFGCYYLGRARGRQ 32 (82)
Q Consensus 7 ISLP~I~f~llLgfGcYflGr~rGR~ 32 (82)
-.+|++++++.+++..+++.|+|.+.
T Consensus 105 W~~P~~~l~~g~~~~~~~~rr~~~~~ 130 (148)
T PF03918_consen 105 WLGPFLLLLLGGALLFRRLRRWRRRA 130 (148)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 35788888888777777777776654
No 87
>PF09777 OSTMP1: Osteopetrosis-associated transmembrane protein 1 precursor; InterPro: IPR019172 Osteopetrosis-associated transmembrane protein 1 (OSTM1) is required for osteoclast and melanocyte maturation and function. Mutations in OSTM1 give rise to autosomal recessive osteopetrosis, also called autosomal recessive Albers-Schonberg disease [, ].
Probab=29.15 E-value=17 Score=27.22 Aligned_cols=29 Identities=17% Similarity=0.349 Sum_probs=19.2
Q ss_pred ehhhHHHHHHHHHHHhhhhhccccccccc
Q 035711 7 ISLPLILFSLLLGFGCYYLGRARGRQDIR 35 (82)
Q Consensus 7 ISLP~I~f~llLgfGcYflGr~rGR~E~~ 35 (82)
||.=++|+-++.=++-|+.|+.+-|+.++
T Consensus 195 v~~~vl~lpv~FY~~s~~~~~~~~r~l~~ 223 (237)
T PF09777_consen 195 VSVFVLFLPVLFYLSSYLHSERKKRKLIL 223 (237)
T ss_pred HHHHHHHHHHHHHHhheeeeccccccccc
Confidence 33334445555566788889888888874
No 88
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=29.13 E-value=47 Score=24.71 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHhhhhh
Q 035711 11 LILFSLLLGFGCYYLG 26 (82)
Q Consensus 11 ~I~f~llLgfGcYflG 26 (82)
.||+.++|+++.||++
T Consensus 205 wl~i~~~l~~~~Y~i~ 220 (268)
T PF09451_consen 205 WLFIILFLFLAAYLIF 220 (268)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 3555666777777765
No 89
>PF02300 Fumarate_red_C: Fumarate reductase subunit C; InterPro: IPR003510 Fumarate reductase is a membrane-bound flavoenzyme consisting of four subunits, A-B. A and B comprise the membrane-extrinsic catalytic domain and C and D link the catalytic centres to the electron-transport chain. This family consists of the 15kDa hydrophobic subunit C.; GO: 0016020 membrane; PDB: 1KFY_O 1L0V_O 3P4S_O 2B76_O 3CIR_O 3P4R_C 1KF6_O 3P4P_C 3P4Q_C.
Probab=29.06 E-value=59 Score=23.33 Aligned_cols=20 Identities=45% Similarity=0.861 Sum_probs=17.9
Q ss_pred hhhHHHHHHHHHHHhhhhhc
Q 035711 8 SLPLILFSLLLGFGCYYLGR 27 (82)
Q Consensus 8 SLP~I~f~llLgfGcYflGr 27 (82)
|+|.++||++|-.|..-|++
T Consensus 32 ~v~~~~f~l~Ll~Gl~~L~~ 51 (129)
T PF02300_consen 32 SVPVAWFSLVLLYGLFALGQ 51 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcc
Confidence 78999999999999888876
No 90
>PRK11283 gltP glutamate/aspartate:proton symporter; Provisional
Probab=28.99 E-value=43 Score=26.97 Aligned_cols=20 Identities=45% Similarity=0.795 Sum_probs=16.7
Q ss_pred hhhHHHHHHHHHHHhhhhhc
Q 035711 8 SLPLILFSLLLGFGCYYLGR 27 (82)
Q Consensus 8 SLP~I~f~llLgfGcYflGr 27 (82)
-|+.|+|++++|++.-.+++
T Consensus 160 ~L~vIiFai~~GiAl~~~~~ 179 (437)
T PRK11283 160 MLPIIFFSVLFGLGLSSLPA 179 (437)
T ss_pred hHHHHHHHHHHHHHHHccCc
Confidence 37899999999999876664
No 91
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=28.83 E-value=57 Score=23.54 Aligned_cols=21 Identities=14% Similarity=0.135 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHhhhhhccc
Q 035711 9 LPLILFSLLLGFGCYYLGRAR 29 (82)
Q Consensus 9 LP~I~f~llLgfGcYflGr~r 29 (82)
|++|+..++++++.|++-+..
T Consensus 8 ~~~il~~~~l~l~~W~l~~~~ 28 (192)
T PRK10893 8 VIILLALIALVLIGWNLADKD 28 (192)
T ss_pred HHHHHHHHHHHHHHhhccCCc
Confidence 488888888999999887553
No 92
>PF10749 DUF2534: Protein of unknown function (DUF2534); InterPro: IPR019685 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae.
Probab=28.78 E-value=13 Score=25.49 Aligned_cols=25 Identities=28% Similarity=0.663 Sum_probs=15.5
Q ss_pred eEEEehhhHHHHHHHHHHHhhhhhcc
Q 035711 3 MVVVISLPLILFSLLLGFGCYYLGRA 28 (82)
Q Consensus 3 ~vlVISLP~I~f~llLgfGcYflGr~ 28 (82)
|+++-|+.|-+++ -+-+|+||||..
T Consensus 60 mi~vYS~VFT~L~-sIPlg~~FLG~~ 84 (85)
T PF10749_consen 60 MILVYSIVFTILL-SIPLGFYFLGED 84 (85)
T ss_pred HHHHHHHHHHHHH-HHHHHheeeCCC
Confidence 4555666654332 245789999965
No 93
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=28.59 E-value=54 Score=26.02 Aligned_cols=24 Identities=29% Similarity=0.725 Sum_probs=18.5
Q ss_pred ceEEEehhhHHHHHH-HHHHHhhhh
Q 035711 2 GMVVVISLPLILFSL-LLGFGCYYL 25 (82)
Q Consensus 2 G~vlVISLP~I~f~l-lLgfGcYfl 25 (82)
|-..=||+-.|+..- |+||-||+|
T Consensus 367 gaIaGIsvavvvvVgglvGfLcWwf 391 (397)
T PF03302_consen 367 GAIAGISVAVVVVVGGLVGFLCWWF 391 (397)
T ss_pred cceeeeeehhHHHHHHHHHHHhhhe
Confidence 456678888776654 889999987
No 94
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=28.24 E-value=45 Score=22.47 Aligned_cols=21 Identities=38% Similarity=0.306 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhhhhhccccc
Q 035711 11 LILFSLLLGFGCYYLGRARGR 31 (82)
Q Consensus 11 ~I~f~llLgfGcYflGr~rGR 31 (82)
++++++++++.+|+..|++=|
T Consensus 27 ~~lll~~~~~~~~~~~r~~~~ 47 (146)
T PF14316_consen 27 LALLLLLLILLLWRLWRRWRR 47 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 455666677777777766554
No 95
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=27.92 E-value=38 Score=22.05 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=13.6
Q ss_pred CceEEEehhhHHHHHHHHHHH
Q 035711 1 MGMVVVISLPLILFSLLLGFG 21 (82)
Q Consensus 1 MG~vlVISLP~I~f~llLgfG 21 (82)
|+ ..++..|+|+|.++++.-
T Consensus 1 M~-~~fl~~plivf~ifVap~ 20 (75)
T PF06667_consen 1 MS-FEFLFVPLIVFMIFVAPI 20 (75)
T ss_pred Cc-hHHHHHHHHHHHHHHHHH
Confidence 44 356778888887777643
No 96
>PLN02687 flavonoid 3'-monooxygenase
Probab=27.88 E-value=91 Score=24.16 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=22.3
Q ss_pred hhhHHHHHHHHHHHhhhhhcccccccccc
Q 035711 8 SLPLILFSLLLGFGCYYLGRARGRQDIRT 36 (82)
Q Consensus 8 SLP~I~f~llLgfGcYflGr~rGR~E~~t 36 (82)
.||+|+..+.++|-||.+=.++.|..-+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (517)
T PLN02687 4 PLPLLLGTVAVSVLVWCLLLRRGGSGKHK 32 (517)
T ss_pred cchHHHHHHHHHHHHHHHHhccccCCCCC
Confidence 57889998888888888877777765544
No 97
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=27.54 E-value=85 Score=16.04 Aligned_cols=14 Identities=43% Similarity=0.786 Sum_probs=8.1
Q ss_pred HHHHHHhhhhhccc
Q 035711 16 LLLGFGCYYLGRAR 29 (82)
Q Consensus 16 llLgfGcYflGr~r 29 (82)
++++.+.+++-|+|
T Consensus 19 ~l~~~~~~~~~~rk 32 (34)
T TIGR01167 19 LLLGLGGLLLRKRK 32 (34)
T ss_pred HHHHHHHHHheecc
Confidence 44455666666654
No 98
>PRK14230 camphor resistance protein CrcB; Provisional
Probab=27.12 E-value=41 Score=22.84 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHHhhhhhcccccc
Q 035711 9 LPLILFSLLLGFGCYYLGRARGRQ 32 (82)
Q Consensus 9 LP~I~f~llLgfGcYflGr~rGR~ 32 (82)
+=-++.++++|+.+.++|..-||+
T Consensus 94 ~~y~~~s~~~gl~a~~lG~~l~~~ 117 (119)
T PRK14230 94 LANIFLHTAGSLLLTWLGLKIGTA 117 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345678889999999999888775
No 99
>PF08867 FRG: FRG domain; InterPro: IPR014966 This entry contains a conserved N-terminal (F/Y)RG motif. It is functionally uncharacterised.
Probab=27.00 E-value=26 Score=22.33 Aligned_cols=17 Identities=18% Similarity=0.268 Sum_probs=11.9
Q ss_pred ccccCCccccCCCCCCC
Q 035711 33 DIRTNPQVFGVPAPPPG 49 (82)
Q Consensus 33 E~~t~~QvyG~P~PPpg 49 (82)
|..+-.||||.|.+==.
T Consensus 62 ~~lal~QHyGlpTrLLD 78 (104)
T PF08867_consen 62 EWLALAQHYGLPTRLLD 78 (104)
T ss_pred HHHHHHhhcCCCcccee
Confidence 34455899999876443
No 100
>PF01141 Gag_p12: Gag polyprotein, inner coat protein p12; InterPro: IPR002079 The retroviral p12 protein is a proline rich virion structural protein found in the inner coat. The function carried out by p12 in assembly and replication is unknown. p12 is associated with pathogenicity of the virus [].; GO: 0019028 viral capsid
Probab=26.74 E-value=28 Score=23.92 Aligned_cols=10 Identities=40% Similarity=0.757 Sum_probs=8.4
Q ss_pred hhhccccccc
Q 035711 24 YLGRARGRQD 33 (82)
Q Consensus 24 flGr~rGR~E 33 (82)
+-+|-|||||
T Consensus 64 m~sRlRgrRe 73 (85)
T PF01141_consen 64 MASRLRGRRE 73 (85)
T ss_pred hhhhhcccCC
Confidence 3489999999
No 101
>PRK00269 zipA cell division protein ZipA; Reviewed
Probab=26.72 E-value=52 Score=26.46 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=16.9
Q ss_pred ehhhHHHHHHHHHHHhhhhh--ccccccc
Q 035711 7 ISLPLILFSLLLGFGCYYLG--RARGRQD 33 (82)
Q Consensus 7 ISLP~I~f~llLgfGcYflG--r~rGR~E 33 (82)
+-+=+|++.+|+-.|.+|.| |.|||++
T Consensus 5 l~~~livig~i~i~~il~~~~~r~r~~~g 33 (293)
T PRK00269 5 LREWLIVIGIIVIAGILFDGWRRMRGGKG 33 (293)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 33446666666666677666 5666654
No 102
>PF00375 SDF: Sodium:dicarboxylate symporter family; InterPro: IPR001991 It has been shown [] that integral membrane proteins that mediate the uptake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families [] is known as the sodium:dicarboxylate symporter family (SDF). Such re-uptake of neurotransmitters from the synapses, is thought to be an important mechanism for terminating their action, by removing these chemicals from the synaptic cleft, and transporting them into presynaptic nerve terminals, and surrounding neuroglia. this removal is also believed to prevent them accumulating to the point of reaching neurotoxic [, ]. The structure of these transporter proteins has been variously reported to contain from 8 to 10 transmembrane (TM) regions, although 10 now seems to be the accepted value. Members of the family include: several mammalian excitatory amino acid transporters, and a number of bacterial transporters. They vary with regars to their dependence on transport of sodium, and other ions.; GO: 0017153 sodium:dicarboxylate symporter activity, 0006835 dicarboxylic acid transport, 0016020 membrane; PDB: 3V8G_B 1XFH_A 3KBC_B 2NWX_B 3V8F_B 2NWL_B 2NWW_A.
Probab=26.59 E-value=64 Score=24.81 Aligned_cols=22 Identities=27% Similarity=0.526 Sum_probs=19.2
Q ss_pred hhhHHHHHHHHHHHhhhhhccc
Q 035711 8 SLPLILFSLLLGFGCYYLGRAR 29 (82)
Q Consensus 8 SLP~I~f~llLgfGcYflGr~r 29 (82)
.|+.++|++++|++...++++.
T Consensus 138 ~L~ivvfai~~G~al~~~~~~~ 159 (390)
T PF00375_consen 138 ILGIVVFAILFGVALGRLGEKG 159 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSS
T ss_pred cchhhhHHHHHHHHHHHHhhhh
Confidence 4789999999999999998764
No 103
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=26.26 E-value=47 Score=26.72 Aligned_cols=27 Identities=41% Similarity=0.599 Sum_probs=22.4
Q ss_pred hhhHHHHHHHHHHHhhhhhcccccccc
Q 035711 8 SLPLILFSLLLGFGCYYLGRARGRQDI 34 (82)
Q Consensus 8 SLP~I~f~llLgfGcYflGr~rGR~E~ 34 (82)
|+|-+-+.+-++||.|++=|++=--+.
T Consensus 148 ~lpwval~la~sf~~Ygl~RK~~~v~a 174 (293)
T COG2962 148 SLPWVALALALSFGLYGLLRKKLKVDA 174 (293)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhcCCch
Confidence 789999999999999999988754443
No 104
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=26.16 E-value=1e+02 Score=18.45 Aligned_cols=16 Identities=13% Similarity=0.050 Sum_probs=10.8
Q ss_pred HHHHHHHHhhhhhccc
Q 035711 14 FSLLLGFGCYYLGRAR 29 (82)
Q Consensus 14 f~llLgfGcYflGr~r 29 (82)
++++|.+.+++++|-.
T Consensus 18 ~L~lL~~~i~l~~~~~ 33 (79)
T PF04277_consen 18 VLILLILVISLMSKLI 33 (79)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4456677777777773
No 105
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=26.15 E-value=57 Score=24.82 Aligned_cols=15 Identities=27% Similarity=0.724 Sum_probs=13.1
Q ss_pred HHhhhhhcccccccc
Q 035711 20 FGCYYLGRARGRQDI 34 (82)
Q Consensus 20 fGcYflGr~rGR~E~ 34 (82)
.+.||.||.-||+.+
T Consensus 166 t~AYf~Gr~fGk~KL 180 (285)
T PRK11624 166 SGAYMFGKLFGKHKL 180 (285)
T ss_pred HHHHHHHHHhCCCCC
Confidence 467999999999986
No 106
>PF06678 DUF1179: Protein of unknown function (DUF1179); InterPro: IPR009564 This family consists of several hypothetical Caenorhabditis elegans proteins of around 106 residues in length. The function of the family is unknown.
Probab=25.94 E-value=60 Score=22.84 Aligned_cols=18 Identities=44% Similarity=0.694 Sum_probs=11.0
Q ss_pred ehhhHHHHHHHHHHHhhhh
Q 035711 7 ISLPLILFSLLLGFGCYYL 25 (82)
Q Consensus 7 ISLP~I~f~llLgfGcYfl 25 (82)
.|+-+||.++.| ||-+|+
T Consensus 2 ~~f~~i~~~i~l-~g~~ll 19 (103)
T PF06678_consen 2 FSFWFILKSIFL-FGPFLL 19 (103)
T ss_pred cchHHHHHHHHH-hhHHHH
Confidence 356677777777 554443
No 107
>KOG4753 consensus Predicted membrane protein [Function unknown]
Probab=25.73 E-value=57 Score=23.67 Aligned_cols=19 Identities=32% Similarity=0.595 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhhhhhccc
Q 035711 11 LILFSLLLGFGCYYLGRAR 29 (82)
Q Consensus 11 ~I~f~llLgfGcYflGr~r 29 (82)
+.|.||+|++|++++|-+.
T Consensus 58 ~~fg~Lli~lg~fl~~~~~ 76 (124)
T KOG4753|consen 58 LVFGLLLIGLGFFLAGGRV 76 (124)
T ss_pred HHHHHHHHHHHHHheecce
Confidence 4577889999999988443
No 108
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=24.94 E-value=78 Score=20.85 Aligned_cols=16 Identities=31% Similarity=0.497 Sum_probs=7.9
Q ss_pred hhHHHHHHHHHHHhhh
Q 035711 9 LPLILFSLLLGFGCYY 24 (82)
Q Consensus 9 LP~I~f~llLgfGcYf 24 (82)
+|+++|.+.+.+|-|+
T Consensus 77 lPll~li~g~~l~~~~ 92 (135)
T PF04246_consen 77 LPLLALIAGAVLGSYL 92 (135)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555544444333
No 109
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=24.86 E-value=80 Score=22.02 Aligned_cols=12 Identities=33% Similarity=0.382 Sum_probs=8.4
Q ss_pred hhcccccccccc
Q 035711 25 LGRARGRQDIRT 36 (82)
Q Consensus 25 lGr~rGR~E~~t 36 (82)
+-|+|-|+-++.
T Consensus 56 ~kRkrsRrPIYr 67 (94)
T PF05393_consen 56 KKRKRSRRPIYR 67 (94)
T ss_pred HHhhhccCCccc
Confidence 568888887743
No 110
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake. Escherichia coli contains several members of this family including GntU, a low affinity transporter [] and GntT, a high affinity transporter [].; GO: 0015128 gluconate transmembrane transporter activity, 0035429 gluconate transmembrane transport, 0016020 membrane
Probab=24.70 E-value=53 Score=26.89 Aligned_cols=26 Identities=35% Similarity=0.579 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHhhhhhcccc--cccc
Q 035711 9 LPLILFSLLLGFGCYYLGRARG--RQDI 34 (82)
Q Consensus 9 LP~I~f~llLgfGcYflGr~rG--R~E~ 34 (82)
=|.|-+.+=+-+++|.+|+.|| |+|+
T Consensus 264 ~p~iALlig~l~a~~~l~~~~~~~~~~~ 291 (441)
T PF02447_consen 264 DPNIALLIGVLIALYLLGRRRGMSREEV 291 (441)
T ss_pred CcHHHHHHHHHHHHHHHhhhcCCCHHHH
Confidence 3555566666678899997765 6665
No 111
>COG1930 CbiN ABC-type cobalt transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=24.64 E-value=33 Score=23.99 Aligned_cols=23 Identities=43% Similarity=0.775 Sum_probs=16.0
Q ss_pred HHHHHHHHH----hhhhhccccccccc
Q 035711 13 LFSLLLGFG----CYYLGRARGRQDIR 35 (82)
Q Consensus 13 ~f~llLgfG----cYflGr~rGR~E~~ 35 (82)
+|+|=-++| .|++|..|||+..+
T Consensus 68 LFslQaaiGa~IIgY~lGyyrgk~~~~ 94 (97)
T COG1930 68 LFSLQAAIGAGIIGYFLGYYRGKGQAE 94 (97)
T ss_pred HHHHHHHhcceeeeeeeeeecchhhhh
Confidence 455444444 59999999998764
No 112
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=24.60 E-value=43 Score=23.97 Aligned_cols=23 Identities=17% Similarity=0.455 Sum_probs=12.5
Q ss_pred HHHHHHHHH-Hhhhhhcccccccc
Q 035711 12 ILFSLLLGF-GCYYLGRARGRQDI 34 (82)
Q Consensus 12 I~f~llLgf-GcYflGr~rGR~E~ 34 (82)
+++++++|+ ..|++.+.+++..+
T Consensus 6 ~i~~~~vG~~~G~~~~~~~~~~~~ 29 (201)
T PF12072_consen 6 AIVALIVGIGIGYLVRKKINRKKL 29 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444 34666777666544
No 113
>PF15117 UPF0697: Uncharacterised protein family UPF0697
Probab=24.21 E-value=33 Score=24.07 Aligned_cols=23 Identities=30% Similarity=0.629 Sum_probs=18.1
Q ss_pred HHHHHHHHHhhhhhccccccccc
Q 035711 13 LFSLLLGFGCYYLGRARGRQDIR 35 (82)
Q Consensus 13 ~f~llLgfGcYflGr~rGR~E~~ 35 (82)
++.+|+.||.++..|..-|+-||
T Consensus 22 livilvS~~l~~YarrNKrkImR 44 (99)
T PF15117_consen 22 LIVILVSFGLFMYARRNKRKIMR 44 (99)
T ss_pred eehhHHhhHHHHhhhhcCceEEE
Confidence 34567889999999988888775
No 114
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=24.10 E-value=68 Score=23.70 Aligned_cols=15 Identities=33% Similarity=0.979 Sum_probs=12.3
Q ss_pred HHhhhhhcccccccc
Q 035711 20 FGCYYLGRARGRQDI 34 (82)
Q Consensus 20 fGcYflGr~rGR~E~ 34 (82)
.+.||.||.-|++..
T Consensus 148 i~Ayf~Gr~fGk~kl 162 (265)
T COG0575 148 IGAYFVGRRFGKHKL 162 (265)
T ss_pred hhHHHHHHHcCCCCC
Confidence 367999999999864
No 115
>KOG4268 consensus Uncharacterized conserved protein containing PAP2 domain [Function unknown]
Probab=24.05 E-value=71 Score=24.61 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=19.8
Q ss_pred hhhHHHHHHHHHHHhhhhhccc
Q 035711 8 SLPLILFSLLLGFGCYYLGRAR 29 (82)
Q Consensus 8 SLP~I~f~llLgfGcYflGr~r 29 (82)
+++++++.++.|+.=-++|||-
T Consensus 137 v~l~~~walvvglSRv~lGRHy 158 (189)
T KOG4268|consen 137 VLLLVLWALVVGLSRVMLGRHY 158 (189)
T ss_pred HHHHHHHHHHHHHHHHHHhhHH
Confidence 6789999999999999999983
No 116
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=23.85 E-value=19 Score=23.54 Aligned_cols=6 Identities=17% Similarity=0.407 Sum_probs=4.7
Q ss_pred cccccc
Q 035711 28 ARGRQD 33 (82)
Q Consensus 28 ~rGR~E 33 (82)
+|||-|
T Consensus 60 K~g~~~ 65 (95)
T TIGR02762 60 KGGEGE 65 (95)
T ss_pred HcCCCh
Confidence 778877
No 117
>PRK11878 psaM photosystem I reaction center subunit XII; Reviewed
Probab=23.82 E-value=53 Score=18.98 Aligned_cols=28 Identities=14% Similarity=0.179 Sum_probs=19.4
Q ss_pred eEEEehhhHHHHHHHHHHHhhhhhcccc
Q 035711 3 MVVVISLPLILFSLLLGFGCYYLGRARG 30 (82)
Q Consensus 3 ~vlVISLP~I~f~llLgfGcYflGr~rG 30 (82)
|+-.||---|+.+|++++-+=+|.-.-|
T Consensus 1 m~~~isd~Qi~iaL~~Al~~giLA~RLG 28 (34)
T PRK11878 1 MEPSLTDTQVFVALVVALHAGVLALRLG 28 (34)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777888888888877666654443
No 118
>PF12669 P12: Virus attachment protein p12 family
Probab=23.75 E-value=43 Score=20.39 Aligned_cols=14 Identities=21% Similarity=0.247 Sum_probs=6.8
Q ss_pred HHHHHHHHHHhhhh
Q 035711 12 ILFSLLLGFGCYYL 25 (82)
Q Consensus 12 I~f~llLgfGcYfl 25 (82)
|+..+++++..|.+
T Consensus 3 II~~Ii~~~~~~v~ 16 (58)
T PF12669_consen 3 IIGIIILAAVAYVA 16 (58)
T ss_pred eHHHHHHHHHHHHH
Confidence 34445555555543
No 119
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=23.70 E-value=37 Score=23.28 Aligned_cols=19 Identities=42% Similarity=0.817 Sum_probs=13.0
Q ss_pred HHHHHHHHHH----hhhhhcccc
Q 035711 12 ILFSLLLGFG----CYYLGRARG 30 (82)
Q Consensus 12 I~f~llLgfG----cYflGr~rG 30 (82)
.||+|=-++| +|++|+.||
T Consensus 69 lLFaLQAaiGagiIgY~~G~~~g 91 (91)
T TIGR01165 69 LLFALQAALGALVIGYVIGYYRG 91 (91)
T ss_pred HHHHHHHHhhheeeeEEEEEecC
Confidence 4677666665 578888776
No 120
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=23.61 E-value=68 Score=21.33 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=16.4
Q ss_pred ehhhHHHHHHHHHHHhhhhhcc
Q 035711 7 ISLPLILFSLLLGFGCYYLGRA 28 (82)
Q Consensus 7 ISLP~I~f~llLgfGcYflGr~ 28 (82)
+.+.+++.++++++.+++++..
T Consensus 18 ~~~~~~~~~~i~~~~~~~~~~~ 39 (149)
T PF09624_consen 18 LALSFIIASFILAFLIPFFGYY 39 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888888888888753
No 121
>PF10694 DUF2500: Protein of unknown function (DUF2500); InterPro: IPR019635 This entry represents a group of proteins that is largely confined to the Gammaproteobacteria. The function is not known. ; PDB: 3RD4_D 2L0C_A 3Q6C_N.
Probab=23.57 E-value=27 Score=22.89 Aligned_cols=17 Identities=24% Similarity=0.538 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhcc
Q 035711 12 ILFSLLLGFGCYYLGRA 28 (82)
Q Consensus 12 I~f~llLgfGcYflGr~ 28 (82)
|++++++++.++.+.|.
T Consensus 6 i~~~iii~~~~~~~~~~ 22 (110)
T PF10694_consen 6 IVFIIIIGIIIFVFIRQ 22 (110)
T ss_dssp -----------------
T ss_pred HhhhhhhHHHHHHHHHH
Confidence 44556666777777643
No 122
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=23.53 E-value=92 Score=17.72 Aligned_cols=17 Identities=41% Similarity=0.505 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHhhhhh
Q 035711 10 PLILFSLLLGFGCYYLG 26 (82)
Q Consensus 10 P~I~f~llLgfGcYflG 26 (82)
=.++++++||.-||-+=
T Consensus 8 g~llv~lLl~YLvYAL~ 24 (29)
T PRK14750 8 GALLVLLLLGYLVYALF 24 (29)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 35788889999998653
No 123
>PF10939 DUF2631: Protein of unknown function (DUF2631) ; InterPro: IPR024341 This entry represents a bacterial protein of unknown function.
Probab=23.46 E-value=71 Score=20.72 Aligned_cols=13 Identities=15% Similarity=0.350 Sum_probs=10.9
Q ss_pred Hhhhhhccccccc
Q 035711 21 GCYYLGRARGRQD 33 (82)
Q Consensus 21 GcYflGr~rGR~E 33 (82)
-.|++|.|.||-|
T Consensus 44 l~ml~GNH~G~VE 56 (65)
T PF10939_consen 44 LAMLIGNHEGHVE 56 (65)
T ss_pred HHHHhcCCCCcee
Confidence 3578999999987
No 124
>PF01569 PAP2: PAP2 superfamily This family includes the following Prosite family; InterPro: IPR000326 This entry represents type 2 phosphatidic acid phosphatase (PAP2; 3.1.3.4 from EC) enzymes, such as phosphatidylglycerophosphatase B 3.1.3.27 from EC from Escherichia coli. PAP2 enzymes have a core structure consisting of a 5-helical bundle, where the beginning of the third helix binds the cofactor []. PAP2 enzymes catalyse the dephosphorylation of phosphatidate, yielding diacylglycerol and inorganic phosphate []. In eukaryotic cells, PAP activity has a central role in the synthesis of phospholipids and triacylglycerol through its product diacylglycerol, and it also generates and/or degrades lipid-signalling molecules that are related to phosphatidate. Other related enzymes have a similar core structure, including haloperoxidases such as bromoperoxidase (contains one core bundle, but forms a dimer), chloroperoxidases (contains two core bundles arranged as in other family dimers), bacitracin transport permease from Bacillus licheniformis, glucose-6-phosphatase from rat. The vanadium-dependent haloperoxidases exclusively catalyse the oxidation of halides, and act as histidine phosphatases, using histidine for the nucleophilic attack in the first step of the reaction []. Amino acid residues involved in binding phosphate/vanadate are conserved between the two families, supporting a proposal that vanadium passes through a tetrahedral intermediate during the reaction mechanism.; GO: 0003824 catalytic activity, 0016020 membrane; PDB: 1QI9_B 1IW8_A 1EOI_A 1D2T_A 1QHB_D 1UP8_C 2IPB_A 1VNS_A 1VNF_A 1VNE_A ....
Probab=23.41 E-value=1.1e+02 Score=18.46 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=16.8
Q ss_pred hhhHHHHHHHHHHHhhhhhccc
Q 035711 8 SLPLILFSLLLGFGCYYLGRAR 29 (82)
Q Consensus 8 SLP~I~f~llLgfGcYflGr~r 29 (82)
.+-++.++++++++-.++|+|-
T Consensus 81 ~~~~~~~~~~v~~srv~~g~H~ 102 (129)
T PF01569_consen 81 FLLAIVLAFLVALSRVYLGAHF 102 (129)
T ss_dssp HHHHHHHHHHHHHHHHHTTSS-
T ss_pred hHHHHHHHHHhhcCEEEcCeEe
Confidence 3456778888899999988874
No 125
>PRK14857 tatA twin arginine translocase protein A; Provisional
Probab=23.09 E-value=71 Score=21.43 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=14.7
Q ss_pred CceEEEehhhHHHHHHHHHHHhhhhhc
Q 035711 1 MGMVVVISLPLILFSLLLGFGCYYLGR 27 (82)
Q Consensus 1 MG~vlVISLP~I~f~llLgfGcYflGr 27 (82)
|.|.- |+++=|++.+|+ ++.+||-
T Consensus 1 m~mF~-iG~~ElliIlvV--aLlvfGP 24 (90)
T PRK14857 1 MNIFG-IGLPEMAVILVI--ALLVFGP 24 (90)
T ss_pred CCccc-ccHHHHHHHHHH--HHHHcCc
Confidence 66663 777766655555 4566663
No 126
>PF06836 DUF1240: Protein of unknown function (DUF1240); InterPro: IPR010665 This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.
Probab=22.73 E-value=58 Score=21.87 Aligned_cols=25 Identities=20% Similarity=0.453 Sum_probs=19.0
Q ss_pred eEEEehhhHHHHHHHHHHHhhhhhc
Q 035711 3 MVVVISLPLILFSLLLGFGCYYLGR 27 (82)
Q Consensus 3 ~vlVISLP~I~f~llLgfGcYflGr 27 (82)
++++.|.|+++..++++|-..+.+|
T Consensus 10 ~i~~~~~Pll~Y~~~~~~~~~i~~~ 34 (95)
T PF06836_consen 10 GILIFSSPLLFYFSYLSFFSFIKNK 34 (95)
T ss_pred hhhhhhHHHHHHHHHHHHHHhhcCC
Confidence 3467899999999999886666544
No 127
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=22.65 E-value=74 Score=23.12 Aligned_cols=20 Identities=15% Similarity=0.384 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhhhhhcccc
Q 035711 11 LILFSLLLGFGCYYLGRARG 30 (82)
Q Consensus 11 ~I~f~llLgfGcYflGr~rG 30 (82)
++.+++++++++|++=|+||
T Consensus 297 ~l~~m~~i~~~~~~~fkrk~ 316 (318)
T TIGR00383 297 VLIVMAVIALGPLIYFRRKG 316 (318)
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 45677788888898888776
No 128
>PRK14224 camphor resistance protein CrcB; Provisional
Probab=22.57 E-value=53 Score=22.61 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHhhhhhcccccc
Q 035711 10 PLILFSLLLGFGCYYLGRARGRQ 32 (82)
Q Consensus 10 P~I~f~llLgfGcYflGr~rGR~ 32 (82)
--++.++++|+.+.++|+.-+|+
T Consensus 98 ~y~~~s~~~gl~a~~~G~~l~~~ 120 (126)
T PRK14224 98 GNISANLFLTLTGVFFGRSLIKA 120 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888888888776664
No 129
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=22.47 E-value=28 Score=22.11 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=15.7
Q ss_pred hhhHHHHHHHHHHHhhhhhccc
Q 035711 8 SLPLILFSLLLGFGCYYLGRAR 29 (82)
Q Consensus 8 SLP~I~f~llLgfGcYflGr~r 29 (82)
|+=-++.-|+||++.+++.+..
T Consensus 29 ~vismimylilGi~L~yis~~~ 50 (54)
T PF04835_consen 29 SVISMIMYLILGIALIYISSND 50 (54)
T ss_pred HHHHHHHHHHHHHHHhhhccCc
Confidence 4444566788999999887654
No 130
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=22.23 E-value=1.1e+02 Score=22.78 Aligned_cols=16 Identities=19% Similarity=0.050 Sum_probs=10.2
Q ss_pred HHHhhhhhcccccccc
Q 035711 19 GFGCYYLGRARGRQDI 34 (82)
Q Consensus 19 gfGcYflGr~rGR~E~ 34 (82)
.+..+++-+.+||+.-
T Consensus 242 ~~~~~~~~~~~~r~~~ 257 (511)
T PF09972_consen 242 LLIFLIIWRKYGRDPK 257 (511)
T ss_pred HHHHHHHhhhcccccc
Confidence 3445667777777764
No 131
>PRK14207 camphor resistance protein CrcB; Provisional
Probab=22.23 E-value=64 Score=21.84 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHhhhhhcccccc
Q 035711 10 PLILFSLLLGFGCYYLGRARGRQ 32 (82)
Q Consensus 10 P~I~f~llLgfGcYflGr~rGR~ 32 (82)
=-++.++++|+.+.++|..-||+
T Consensus 101 ~y~~~s~~~gl~a~~lG~~l~~~ 123 (123)
T PRK14207 101 LNISANVLITISLVFLGFILARR 123 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 34678889999999999877764
No 132
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=21.98 E-value=61 Score=24.39 Aligned_cols=21 Identities=33% Similarity=0.165 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhhhhhcccccc
Q 035711 12 ILFSLLLGFGCYYLGRARGRQ 32 (82)
Q Consensus 12 I~f~llLgfGcYflGr~rGR~ 32 (82)
++++|++.|-||++|+--=+-
T Consensus 2 ~~~~ll~~~~~~~~a~l~w~~ 22 (259)
T TIGR01713 2 ILTFILLVFISQQLGYILWNV 22 (259)
T ss_pred chHHHHHHHHHHHHhheEEEe
Confidence 467788888899998865543
No 133
>PF11137 DUF2909: Protein of unknown function (DUF2909); InterPro: IPR021313 This is a family of proteins conserved in Proteobacteria of unknown function.
Probab=21.94 E-value=52 Score=20.81 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=17.5
Q ss_pred ehhhHHHHHHHHHHHhhhhhcccccc
Q 035711 7 ISLPLILFSLLLGFGCYYLGRARGRQ 32 (82)
Q Consensus 7 ISLP~I~f~llLgfGcYflGr~rGR~ 32 (82)
|.+=+|+...=|+-|.||+=|.+|+.
T Consensus 5 iv~lll~ii~sL~saL~~l~kd~~~~ 30 (63)
T PF11137_consen 5 IVLLLLAIIASLFSALFFLVKDKGSS 30 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 33444455555788899999998843
No 134
>PF10131 PTPS_related: 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein; InterPro: IPR018776 This entry is found in various bacterial and archaeal hypothetical membrane proteins, as well as in tetratricopeptide TPR_2 repeat protein. Its function has not yet been established, though it shows similarity to 6-pyruvoyl-tetrahydropterin synthase.
Probab=21.91 E-value=67 Score=27.09 Aligned_cols=21 Identities=48% Similarity=0.877 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhhhhhccccc
Q 035711 11 LILFSLLLGFGCYYLGRARGR 31 (82)
Q Consensus 11 ~I~f~llLgfGcYflGr~rGR 31 (82)
.++-+++.|++.|+++|..||
T Consensus 30 ~~L~~~l~~~~~Y~~~R~~~~ 50 (616)
T PF10131_consen 30 IFLAFFLGGLGMYFLGRRLGR 50 (616)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 345567789999999999998
No 135
>COG3190 FliO Flagellar biogenesis protein [Cell motility and secretion]
Probab=21.88 E-value=87 Score=22.67 Aligned_cols=20 Identities=30% Similarity=0.326 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHhhhhhcc
Q 035711 9 LPLILFSLLLGFGCYYLGRA 28 (82)
Q Consensus 9 LP~I~f~llLgfGcYflGr~ 28 (82)
.-+|+..+++.|+||++=|-
T Consensus 29 gsL~~iL~lil~~~wl~kr~ 48 (137)
T COG3190 29 GSLILILALILFLAWLVKRL 48 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34677778888999987554
No 136
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=21.84 E-value=61 Score=27.22 Aligned_cols=22 Identities=45% Similarity=0.848 Sum_probs=18.5
Q ss_pred ehhhHHHHHHHHHHHhhhhhcc
Q 035711 7 ISLPLILFSLLLGFGCYYLGRA 28 (82)
Q Consensus 7 ISLP~I~f~llLgfGcYflGr~ 28 (82)
.++-+|+..|.||.|.|+||.-
T Consensus 35 l~~~all~aLgLGagg~~f~Qq 56 (391)
T COG2959 35 LSLAALLLALGLGAGGYYFGQQ 56 (391)
T ss_pred HHHHHHHHHHHhchhHHHHHHH
Confidence 3667888999999999999964
No 137
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=21.68 E-value=89 Score=19.62 Aligned_cols=19 Identities=26% Similarity=0.266 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHhhhhhcc
Q 035711 10 PLILFSLLLGFGCYYLGRA 28 (82)
Q Consensus 10 P~I~f~llLgfGcYflGr~ 28 (82)
-+|.|++++++--||+.+.
T Consensus 5 ~~i~Flil~~~l~~~~~~p 23 (132)
T PF00430_consen 5 QLINFLILFFLLNKFLYKP 23 (132)
T ss_dssp HHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777654
No 138
>PRK00442 tatA twin arginine translocase protein A; Provisional
Probab=21.54 E-value=53 Score=22.36 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=9.7
Q ss_pred CceEEEehhhHHHHHHHHHHH
Q 035711 1 MGMVVVISLPLILFSLLLGFG 21 (82)
Q Consensus 1 MG~vlVISLP~I~f~llLgfG 21 (82)
||+.-.--|=+|++.+||-||
T Consensus 1 Mg~~g~~elliIlvIvlllFG 21 (92)
T PRK00442 1 MGIFDWKHWIVILVVVVLVFG 21 (92)
T ss_pred CCCccHHHHHHHHHHHHHHhC
Confidence 555333334444444555554
No 139
>PHA00350 putative assembly protein
Probab=21.51 E-value=1.5e+02 Score=24.27 Aligned_cols=14 Identities=36% Similarity=0.790 Sum_probs=7.6
Q ss_pred HHHHHHHHHhhhhh
Q 035711 13 LFSLLLGFGCYYLG 26 (82)
Q Consensus 13 ~f~llLgfGcYflG 26 (82)
+++.+++++.|+-+
T Consensus 233 ~~~~~~~~~~~~~~ 246 (399)
T PHA00350 233 LLLGILSFGYYFYA 246 (399)
T ss_pred HHHHHhhhhhhhhe
Confidence 44556666644444
No 140
>PF13796 Sensor: Putative sensor
Probab=21.41 E-value=46 Score=22.64 Aligned_cols=30 Identities=27% Similarity=0.346 Sum_probs=18.5
Q ss_pred HHhhhhhccccccccccCCccccCCCCCCC
Q 035711 20 FGCYYLGRARGRQDIRTNPQVFGVPAPPPG 49 (82)
Q Consensus 20 fGcYflGr~rGR~E~~t~~QvyG~P~PPpg 49 (82)
.++-...|.-++.|-+-.....|.++|+|.
T Consensus 37 ~~~~~~~r~~a~~eR~r~~~~lg~~i~~p~ 66 (181)
T PF13796_consen 37 PLALAAARGFARLERRRARRLLGVPIPRPY 66 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 344455666666665555556688777665
No 141
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=21.18 E-value=33 Score=22.22 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=0.7
Q ss_pred HHHHHHHHHHHhhhhhcccccccc
Q 035711 11 LILFSLLLGFGCYYLGRARGRQDI 34 (82)
Q Consensus 11 ~I~f~llLgfGcYflGr~rGR~E~ 34 (82)
+++..+|+.|.+| |.|-|.|-
T Consensus 22 ll~ailLIlf~iy---R~rkkdEG 42 (64)
T PF01034_consen 22 LLFAILLILFLIY---RMRKKDEG 42 (64)
T ss_dssp ------------------S-----
T ss_pred HHHHHHHHHHHHH---HHHhcCCC
Confidence 4444455555555 66777764
No 142
>PRK14210 camphor resistance protein CrcB; Provisional
Probab=21.11 E-value=61 Score=22.00 Aligned_cols=23 Identities=30% Similarity=0.415 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHhhhhhcccccc
Q 035711 10 PLILFSLLLGFGCYYLGRARGRQ 32 (82)
Q Consensus 10 P~I~f~llLgfGcYflGr~rGR~ 32 (82)
=-++.++++|+.+-++|..-||+
T Consensus 103 ~y~~~s~~~gl~a~~lG~~l~~~ 125 (127)
T PRK14210 103 FYVFISILLGLLAVLAGGYLGEQ 125 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34678889999999999888775
No 143
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=20.96 E-value=74 Score=26.40 Aligned_cols=21 Identities=38% Similarity=0.679 Sum_probs=15.0
Q ss_pred hhhHHHHHHHHHHHhhhhhccc
Q 035711 8 SLPLILFSLLLGFGCYYLGRAR 29 (82)
Q Consensus 8 SLP~I~f~llLgfGcYflGr~r 29 (82)
+=|.+.+.+++++| |++||-|
T Consensus 9 ~~p~l~lfl~i~lG-~~lG~ik 29 (562)
T TIGR03802 9 SNPEIALFLSLALG-YLIGKIK 29 (562)
T ss_pred HCHHHHHHHHHHHh-HhhcceE
Confidence 45777777778777 6677755
No 144
>TIGR03662 Chlor_Arch_YYY Chlor_Arch_YYY domain. Members of this highly hydrophobic probable integral membrane family belong to two classes. In one, a single copy of the region modeled by This model represents essentially the full length of a strongly hydrophobic protein of about 700 to 900 residues (variable because of long inserts in some). The domain architecture of the other class consists of an additional N-terminal region, two copies of the region represented by this model, and three to four repeats of TPR, or tetratricopeptide repeat. The unusual species range includes several Archaea, several Chloroflexi, and Clostridium phytofermentans. An unusual motif YYYxG is present, and we suggest the name Chlor_Arch_YYY protein. The function is unknown.
Probab=20.75 E-value=54 Score=28.75 Aligned_cols=23 Identities=22% Similarity=0.550 Sum_probs=18.2
Q ss_pred EehhhHHHHHHHHHHHhhhhhcc
Q 035711 6 VISLPLILFSLLLGFGCYYLGRA 28 (82)
Q Consensus 6 VISLP~I~f~llLgfGcYflGr~ 28 (82)
++|+||.++.+.+++.+|.-.+.
T Consensus 278 ~~a~pf~ll~l~l~~a~~~~~~~ 300 (723)
T TIGR03662 278 MIAIPFTLLALALALAWWLRPKG 300 (723)
T ss_pred HHHHHHHHHHHHHHHHHHhccch
Confidence 57899999999999988855543
No 145
>TIGR03529 GldK_short gliding motility-associated lipoprotein GldK. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldK is a lipoprotein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae. Knockouts of GldK abolish the gliding phenotype. GldK is homologous to GldJ. This model represents a GldK homolog in Cytophaga hutchinsonii and several other species that has a different, shorter architecture than that found in Flavobacterium johnsoniae and related species (represented by (TIGR03525). Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=20.71 E-value=62 Score=25.40 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=19.4
Q ss_pred ehhhHHHHHHHHHHHhhhhhccccccc
Q 035711 7 ISLPLILFSLLLGFGCYYLGRARGRQD 33 (82)
Q Consensus 7 ISLP~I~f~llLgfGcYflGr~rGR~E 33 (82)
+|+-+++.+++|-.||-+|+|+-+..+
T Consensus 3 ~~~~~~~~~~~~l~~c~~~~~~~~~~~ 29 (344)
T TIGR03529 3 LSITLGLAVATLLPGCGLFNKKGSASE 29 (344)
T ss_pred ceeehHHHHHHHHhhcchhhccCCCCC
Confidence 344455556667889999998877666
No 146
>smart00182 CULLIN Cullin.
Probab=20.35 E-value=1.1e+02 Score=20.09 Aligned_cols=26 Identities=38% Similarity=0.604 Sum_probs=23.3
Q ss_pred ehhhHHHHHHHHHHHhhhhhcccccc
Q 035711 7 ISLPLILFSLLLGFGCYYLGRARGRQ 32 (82)
Q Consensus 7 ISLP~I~f~llLgfGcYflGr~rGR~ 32 (82)
+.||-.+-.++=-|.-+|..++.||+
T Consensus 101 ~~lP~~l~~~~~~f~~~Y~~~~~~Rk 126 (142)
T smart00182 101 INLPQELEDALEEFEEFYLAKHSGRK 126 (142)
T ss_pred eECCHHHHHHHHHHHHHHHhCCCCCe
Confidence 57899999999999999999999886
No 147
>PF02203 TarH: Tar ligand binding domain homologue; InterPro: IPR003122 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the ligand-binding domain found in a number of methyl-accepting chemotaxis receptors.; GO: 0004888 transmembrane signaling receptor activity, 0006935 chemotaxis, 0007165 signal transduction, 0016020 membrane; PDB: 2ASR_A 3ATP_A 2D4U_A 2LIG_A 1VLS_A 1LIH_A 1WAT_B 1VLT_B 1WAS_A 1JMW_A.
Probab=20.29 E-value=18 Score=23.26 Aligned_cols=30 Identities=23% Similarity=0.444 Sum_probs=10.9
Q ss_pred eEEEehhhHHHHHHHHHHHhhhhhcccccc
Q 035711 3 MVVVISLPLILFSLLLGFGCYYLGRARGRQ 32 (82)
Q Consensus 3 ~vlVISLP~I~f~llLgfGcYflGr~rGR~ 32 (82)
+.+++++-+|+++++.++|++-+.+....=
T Consensus 11 L~~~l~~~~~ll~~~~~~~~~~l~~~~~~l 40 (171)
T PF02203_consen 11 LLLVLALFLLLLLVVGGLGFWGLRSSNESL 40 (171)
T ss_dssp --------------HHCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777778888888888887776655443
No 148
>PRK15049 L-asparagine permease; Provisional
Probab=20.07 E-value=1.1e+02 Score=24.33 Aligned_cols=21 Identities=19% Similarity=0.007 Sum_probs=11.7
Q ss_pred HHHHHhhhhhccccccccccC
Q 035711 17 LLGFGCYYLGRARGRQDIRTN 37 (82)
Q Consensus 17 lLgfGcYflGr~rGR~E~~t~ 37 (82)
++...+|++.|+|.+++.++.
T Consensus 459 ~~~~~~~~~~~~~~~~~~~~~ 479 (499)
T PRK15049 459 ILLVIGWFGVRKRVAEIHSTA 479 (499)
T ss_pred HHHHHHHHHHhcccccccCCC
Confidence 333445677777655555553
Done!