Query 035711
Match_columns 82
No_of_seqs 18 out of 20
Neff 2.0
Searched_HMMs 29240
Date Mon Mar 25 09:07:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035711.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035711hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l34_A TYRO protein tyrosine k 67.8 3.5 0.00012 22.5 2.1 18 11-28 16-33 (33)
2 2l35_A DAP12-NKG2C_TM; immunor 58.7 6.5 0.00022 24.7 2.3 22 12-34 17-38 (63)
3 3lb6_C IL-13, interleukin-13 r 52.6 2.9 0.0001 29.9 0.0 22 5-26 342-363 (380)
4 3bx4_B Aggretin beta chain; to 43.7 4.9 0.00017 24.2 0.0 18 1-18 1-18 (146)
5 2l2t_A Receptor tyrosine-prote 35.3 28 0.00097 20.0 2.4 13 16-28 26-38 (44)
6 2lx0_A Membrane fusion protein 34.1 30 0.001 19.2 2.3 15 12-26 13-27 (32)
7 2jwa_A Receptor tyrosine-prote 32.0 23 0.00079 20.4 1.7 20 11-30 22-41 (44)
8 1kf6_C Fumarate reductase 15 k 31.4 32 0.0011 23.8 2.6 20 8-27 32-51 (130)
9 2nwl_A GLTPH, glutamate sympor 31.2 22 0.00076 27.2 1.9 19 9-27 152-170 (422)
10 1rh5_C Secbeta; protein transl 26.4 8.3 0.00028 22.8 -1.0 19 4-22 33-51 (53)
11 2ks1_B Epidermal growth factor 25.9 57 0.002 18.5 2.6 12 16-27 27-38 (44)
12 3u66_A SCIP/TSSL, putative typ 25.5 23 0.00079 24.5 1.0 15 10-24 126-141 (183)
13 2j5d_A BNIP3 TM, BCL2/adenovir 23.7 58 0.002 19.2 2.4 16 9-24 21-36 (45)
14 4ack_A TSSL; protein transport 22.5 23 0.0008 25.9 0.6 14 11-24 123-137 (185)
No 1
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=67.76 E-value=3.5 Score=22.46 Aligned_cols=18 Identities=28% Similarity=0.790 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhhhhhcc
Q 035711 11 LILFSLLLGFGCYYLGRA 28 (82)
Q Consensus 11 ~I~f~llLgfGcYflGr~ 28 (82)
-|...++++.+.|+++|.
T Consensus 16 di~~t~~i~~~vy~~~r~ 33 (33)
T 2l34_A 16 DLVLTVLIALAVYFLGRL 33 (33)
T ss_dssp HHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHhheecC
Confidence 356677899999999884
No 2
>2l35_A DAP12-NKG2C_TM; immunoreceptor, transmembrane assembly, DAP12-NKG2C complex; NMR {Homo sapiens}
Probab=58.69 E-value=6.5 Score=24.66 Aligned_cols=22 Identities=27% Similarity=0.889 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhhhhhcccccccc
Q 035711 12 ILFSLLLGFGCYYLGRARGRQDI 34 (82)
Q Consensus 12 I~f~llLgfGcYflGr~rGR~E~ 34 (82)
|+..++++++-|++.|+ |-+|+
T Consensus 17 Ii~TllLal~VY~~A~~-~~a~~ 38 (63)
T 2l35_A 17 LVLTVLIALAVYFLGRL-GTAEV 38 (63)
T ss_dssp HHHHHHHHHHHHHHCCS-SSCCT
T ss_pred HHHHHHHHHHHHhhccc-chhhh
Confidence 67788999999999987 55443
No 3
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D*
Probab=52.63 E-value=2.9 Score=29.89 Aligned_cols=22 Identities=23% Similarity=0.159 Sum_probs=0.0
Q ss_pred EEehhhHHHHHHHHHHHhhhhh
Q 035711 5 VVISLPLILFSLLLGFGCYYLG 26 (82)
Q Consensus 5 lVISLP~I~f~llLgfGcYflG 26 (82)
++|.+|+||+++++.+.|.++-
T Consensus 342 ~~~~i~~~~~~~~~l~~~~~~~ 363 (380)
T 3lb6_C 342 LRFWLPFGFILILVIFVTGLLL 363 (380)
T ss_dssp ----------------------
T ss_pred EEEEhHHHHHHHHHHHHHHHHH
Confidence 4566887777655555555543
No 4
>3bx4_B Aggretin beta chain; toxin; 1.70A {Agkistrodon rhodostoma} PDB: 2vrp_B
Probab=43.75 E-value=4.9 Score=24.21 Aligned_cols=18 Identities=33% Similarity=0.556 Sum_probs=0.0
Q ss_pred CceEEEehhhHHHHHHHH
Q 035711 1 MGMVVVISLPLILFSLLL 18 (82)
Q Consensus 1 MG~vlVISLP~I~f~llL 18 (82)
||-.+++|+.++++.+.+
T Consensus 1 M~~~~~~~~~ll~~~~~~ 18 (146)
T 3bx4_B 1 MGRFIFVSFGLLVVFLSL 18 (146)
T ss_dssp ------------------
T ss_pred CceeHHHHHHHHHHHHhc
Confidence 888888887776655444
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=35.32 E-value=28 Score=19.97 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=5.2
Q ss_pred HHHHHHhhhhhcc
Q 035711 16 LLLGFGCYYLGRA 28 (82)
Q Consensus 16 llLgfGcYflGr~ 28 (82)
+++++.+|+=.|+
T Consensus 26 i~~~~~~~~RRRr 38 (44)
T 2l2t_A 26 VGLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHhhhhh
Confidence 3334444443333
No 6
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=34.07 E-value=30 Score=19.22 Aligned_cols=15 Identities=20% Similarity=0.552 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhhhhh
Q 035711 12 ILFSLLLGFGCYYLG 26 (82)
Q Consensus 12 I~f~llLgfGcYflG 26 (82)
+-++-.|+||+|+|-
T Consensus 13 valltflafgfwlfk 27 (32)
T 2lx0_A 13 VALLTFLAFGFWLFK 27 (32)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345566899999873
No 7
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=32.05 E-value=23 Score=20.43 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhhhhhcccc
Q 035711 11 LILFSLLLGFGCYYLGRARG 30 (82)
Q Consensus 11 ~I~f~llLgfGcYflGr~rG 30 (82)
++++.+.+++++|+=.|++-
T Consensus 22 ll~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 22 LLVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHhheehhhhh
Confidence 35666667777777555443
No 8
>1kf6_C Fumarate reductase 15 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_C* 1l0v_C* 2b76_C* 3cir_C* 3p4p_C* 3p4q_C* 3p4r_C* 3p4s_C*
Probab=31.43 E-value=32 Score=23.81 Aligned_cols=20 Identities=35% Similarity=0.644 Sum_probs=17.7
Q ss_pred hhhHHHHHHHHHHHhhhhhc
Q 035711 8 SLPLILFSLLLGFGCYYLGR 27 (82)
Q Consensus 8 SLP~I~f~llLgfGcYflGr 27 (82)
|+|.+.|||+|-+|..-|++
T Consensus 32 ~v~~~wf~l~Ll~Gl~~L~~ 51 (130)
T 1kf6_C 32 AVPAVWFSIELIFGLFALKN 51 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 78999999999999888765
No 9
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=31.16 E-value=22 Score=27.23 Aligned_cols=19 Identities=42% Similarity=0.836 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHhhhhhc
Q 035711 9 LPLILFSLLLGFGCYYLGR 27 (82)
Q Consensus 9 LP~I~f~llLgfGcYflGr 27 (82)
|+.|+|++++|+++-.+|+
T Consensus 152 L~vivfai~~Gial~~~~~ 170 (422)
T 2nwl_A 152 LPTIFFAIILGIAITYLMN 170 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHccc
Confidence 7899999999999999884
No 10
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=26.43 E-value=8.3 Score=22.84 Aligned_cols=19 Identities=16% Similarity=0.579 Sum_probs=13.4
Q ss_pred EEEehhhHHHHHHHHHHHh
Q 035711 4 VVVISLPLILFSLLLGFGC 22 (82)
Q Consensus 4 vlVISLP~I~f~llLgfGc 22 (82)
|+++|+-+|.++++|-++.
T Consensus 33 Vl~~si~~i~~V~~L~~~~ 51 (53)
T 1rh5_C 33 VIGVTVAFVIIEAILTYGR 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHTC
T ss_pred hhhhHHHHHHHHHHHHHHH
Confidence 4567777888887776654
No 11
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=25.93 E-value=57 Score=18.51 Aligned_cols=12 Identities=33% Similarity=0.659 Sum_probs=4.9
Q ss_pred HHHHHHhhhhhc
Q 035711 16 LLLGFGCYYLGR 27 (82)
Q Consensus 16 llLgfGcYflGr 27 (82)
+++++.+|+=.|
T Consensus 27 i~~~~~~~~RRr 38 (44)
T 2ks1_B 27 VALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHhhhh
Confidence 334444444333
No 12
>3u66_A SCIP/TSSL, putative type VI secretion protein; duble helical bundle, protein secretion, attached to inner M unknown function; 2.63A {Escherichia coli}
Probab=25.49 E-value=23 Score=24.46 Aligned_cols=15 Identities=40% Similarity=0.631 Sum_probs=10.6
Q ss_pred hHHHHHHHHHH-Hhhh
Q 035711 10 PLILFSLLLGF-GCYY 24 (82)
Q Consensus 10 P~I~f~llLgf-GcYf 24 (82)
=++.+||.||| |-|-
T Consensus 126 E~~y~cL~LGF~GrYr 141 (183)
T 3u66_A 126 TCLCRTLQLGFTGQYR 141 (183)
T ss_dssp HHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHCCCCccCC
Confidence 36778888887 5553
No 13
>2j5d_A BNIP3 TM, BCL2/adenovirus E1B 19 kDa protein-interacting protein 3; membrane protein, mitochondrion, transmembrane, transmembrane domain, membrane; NMR {Homo sapiens} PDB: 2ka1_A 2ka2_A
Probab=23.67 E-value=58 Score=19.15 Aligned_cols=16 Identities=44% Similarity=0.594 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHHHhhh
Q 035711 9 LPLILFSLLLGFGCYY 24 (82)
Q Consensus 9 LP~I~f~llLgfGcYf 24 (82)
+|.++..=+|++|.|.
T Consensus 21 ~psll~shiL~~GlgI 36 (45)
T 2j5d_A 21 LPSLLLSHLLAIGLGI 36 (45)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhcceE
Confidence 6777777777777654
No 14
>4ack_A TSSL; protein transport, microbial surface structures, virul factor; 2.15A {Francisella novicida} PDB: 4acl_A
Probab=22.46 E-value=23 Score=25.95 Aligned_cols=14 Identities=43% Similarity=0.629 Sum_probs=9.4
Q ss_pred HHHHHHHHHH-Hhhh
Q 035711 11 LILFSLLLGF-GCYY 24 (82)
Q Consensus 11 ~I~f~llLgf-GcYf 24 (82)
++.+||.||| |+|+
T Consensus 123 l~YlcL~LGF~GkY~ 137 (185)
T 4ack_A 123 TISLILHNDFYGKYY 137 (185)
T ss_dssp HHHHHHHTTCCGGGT
T ss_pred HHHHHHHCCCceehh
Confidence 5677888886 4554
Done!