Query 035712
Match_columns 563
No_of_seqs 249 out of 1899
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 09:08:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035712.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035712hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h89_C C-MYB, MYB proto-oncoge 100.0 2.7E-37 9.4E-42 286.6 13.4 154 370-563 3-159 (159)
2 1h8a_C AMV V-MYB, MYB transfor 100.0 2.4E-32 8.1E-37 245.5 13.4 125 421-563 1-128 (128)
3 1gv2_A C-MYB, MYB proto-oncoge 99.9 1.9E-26 6.6E-31 200.1 12.5 101 445-563 3-105 (105)
4 2k9n_A MYB24; R2R3 domain, DNA 99.9 6.6E-26 2.3E-30 198.2 12.4 97 446-560 1-99 (107)
5 3osg_A MYB21; transcription-DN 99.9 7E-26 2.4E-30 203.6 12.1 99 444-560 9-108 (126)
6 3zqc_A MYB3; transcription-DNA 99.9 4.9E-26 1.7E-30 205.6 11.0 99 446-562 2-102 (131)
7 3zqc_A MYB3; transcription-DNA 99.9 2.5E-26 8.6E-31 207.5 8.9 108 373-502 2-111 (131)
8 1gv2_A C-MYB, MYB proto-oncoge 99.9 1.8E-25 6.1E-30 194.0 12.0 99 371-491 2-102 (105)
9 2k9n_A MYB24; R2R3 domain, DNA 99.9 6.6E-25 2.3E-29 191.9 13.4 98 373-492 1-100 (107)
10 3osg_A MYB21; transcription-DN 99.9 5.8E-25 2E-29 197.6 12.4 99 370-491 8-108 (126)
11 1h8a_C AMV V-MYB, MYB transfor 99.9 5.5E-24 1.9E-28 191.1 13.1 100 370-491 24-125 (128)
12 1h89_C C-MYB, MYB proto-oncoge 99.9 4.3E-24 1.5E-28 198.1 7.9 102 445-563 5-108 (159)
13 2dim_A Cell division cycle 5-l 99.7 2.1E-17 7.3E-22 134.5 5.0 61 444-504 7-69 (70)
14 1ign_A Protein (RAP1); RAP1,ye 99.5 1.2E-14 4.3E-19 143.7 10.4 115 444-559 6-197 (246)
15 2dim_A Cell division cycle 5-l 99.5 5E-15 1.7E-19 120.5 4.9 63 370-454 6-69 (70)
16 2llk_A Cyclin-D-binding MYB-li 99.5 1.7E-14 5.9E-19 119.6 7.0 62 429-490 5-67 (73)
17 1guu_A C-MYB, MYB proto-oncoge 99.5 7.2E-14 2.5E-18 107.2 6.2 49 445-493 2-52 (52)
18 2d9a_A B-MYB, MYB-related prot 99.4 1.3E-13 4.4E-18 108.8 7.2 52 444-495 6-59 (60)
19 1gvd_A MYB proto-oncogene prot 99.4 9.9E-14 3.4E-18 106.6 6.2 49 445-493 2-52 (52)
20 2din_A Cell division cycle 5-l 99.4 6.7E-14 2.3E-18 112.6 5.2 58 440-497 2-60 (66)
21 1ign_A Protein (RAP1); RAP1,ye 99.4 8.4E-13 2.9E-17 130.7 9.8 104 371-491 6-198 (246)
22 3sjm_A Telomeric repeat-bindin 99.4 4.8E-13 1.6E-17 108.0 6.4 51 444-494 9-63 (64)
23 1ity_A TRF1; helix-turn-helix, 99.4 6.8E-13 2.3E-17 107.7 7.1 57 444-500 8-68 (69)
24 2juh_A Telomere binding protei 99.4 4.9E-13 1.7E-17 120.6 6.8 69 444-512 15-95 (121)
25 2d9a_A B-MYB, MYB-related prot 99.4 9.2E-13 3.1E-17 104.0 7.5 56 491-563 3-58 (60)
26 2roh_A RTBP1, telomere binding 99.4 1.3E-12 4.3E-17 118.1 8.2 69 444-512 29-109 (122)
27 2cu7_A KIAA1915 protein; nucle 99.3 1E-12 3.5E-17 107.6 6.5 53 444-496 7-60 (72)
28 1x41_A Transcriptional adaptor 99.3 1.5E-12 5E-17 103.2 6.9 49 444-492 6-56 (60)
29 1gvd_A MYB proto-oncogene prot 99.3 1.5E-12 5.3E-17 99.9 6.7 52 494-562 1-52 (52)
30 1w0t_A Telomeric repeat bindin 99.3 1.6E-12 5.4E-17 100.5 6.2 47 445-491 1-51 (53)
31 1guu_A C-MYB, MYB proto-oncoge 99.3 1.7E-12 5.9E-17 99.5 6.3 52 494-562 1-52 (52)
32 2elk_A SPCC24B10.08C protein; 99.3 5.4E-12 1.8E-16 99.6 6.5 48 443-490 6-56 (58)
33 2llk_A Cyclin-D-binding MYB-li 99.3 5.3E-12 1.8E-16 104.7 6.6 60 482-560 9-68 (73)
34 2juh_A Telomere binding protei 99.3 9.1E-12 3.1E-16 112.4 8.5 80 369-470 13-103 (121)
35 2yum_A ZZZ3 protein, zinc fing 99.3 4.7E-12 1.6E-16 104.0 6.0 56 444-499 6-68 (75)
36 1x41_A Transcriptional adaptor 99.2 1.5E-11 5.1E-16 97.4 7.1 54 492-562 4-57 (60)
37 2din_A Cell division cycle 5-l 99.2 6.7E-12 2.3E-16 100.9 4.4 54 489-561 2-55 (66)
38 1ity_A TRF1; helix-turn-helix, 99.2 1.8E-11 6.2E-16 99.3 6.5 56 491-563 5-62 (69)
39 2roh_A RTBP1, telomere binding 99.2 6E-11 2.1E-15 107.2 10.1 76 369-466 27-113 (122)
40 2ckx_A NGTRF1, telomere bindin 99.2 4.7E-11 1.6E-15 101.2 8.6 66 447-512 1-78 (83)
41 3sjm_A Telomeric repeat-bindin 99.2 2.5E-11 8.4E-16 98.0 6.1 53 494-563 9-63 (64)
42 1w0t_A Telomeric repeat bindin 99.2 3.7E-11 1.3E-15 92.7 6.4 50 495-561 1-52 (53)
43 2cu7_A KIAA1915 protein; nucle 99.1 6E-11 2E-15 97.1 6.5 54 490-561 3-56 (72)
44 2elk_A SPCC24B10.08C protein; 99.1 8.4E-11 2.9E-15 92.7 6.9 50 493-559 6-56 (58)
45 2yus_A SWI/SNF-related matrix- 99.1 8.6E-11 3E-15 98.5 5.1 45 445-489 17-62 (79)
46 2ltp_A Nuclear receptor corepr 98.6 1.5E-11 5.1E-16 105.0 0.0 48 444-491 14-62 (89)
47 2yum_A ZZZ3 protein, zinc fing 99.1 9.7E-11 3.3E-15 96.2 4.5 58 491-561 3-61 (75)
48 2aje_A Telomere repeat-binding 99.0 3.8E-10 1.3E-14 99.5 8.0 64 443-506 10-84 (105)
49 2cqr_A RSGI RUH-043, DNAJ homo 99.0 3.9E-10 1.3E-14 93.4 5.7 48 444-491 16-68 (73)
50 2yus_A SWI/SNF-related matrix- 98.9 2E-09 6.7E-14 90.3 6.9 48 493-558 15-62 (79)
51 2ltp_A Nuclear receptor corepr 98.4 1.6E-10 5.5E-15 98.5 0.0 54 490-561 10-63 (89)
52 1x58_A Hypothetical protein 49 98.9 1.7E-09 5.7E-14 87.2 5.7 49 443-491 5-57 (62)
53 2cqr_A RSGI RUH-043, DNAJ homo 98.8 9.5E-09 3.3E-13 85.1 7.3 55 370-443 15-69 (73)
54 2cjj_A Radialis; plant develop 98.7 1.2E-08 4E-13 88.2 6.1 46 445-490 7-57 (93)
55 2ckx_A NGTRF1, telomere bindin 98.7 1E-07 3.6E-12 80.7 9.5 68 374-463 1-79 (83)
56 2aje_A Telomere repeat-binding 98.6 6.6E-08 2.2E-12 85.3 7.6 75 370-466 10-95 (105)
57 2eqr_A N-COR1, N-COR, nuclear 98.6 6.6E-08 2.3E-12 76.9 6.3 46 445-490 11-57 (61)
58 2cjj_A Radialis; plant develop 98.5 8E-08 2.7E-12 83.0 6.0 51 495-559 7-57 (93)
59 2cqq_A RSGI RUH-037, DNAJ homo 98.4 3.1E-07 1E-11 75.9 6.3 47 445-491 7-57 (72)
60 2eqr_A N-COR1, N-COR, nuclear 98.2 2.1E-06 7.2E-11 68.2 6.9 49 494-560 10-58 (61)
61 1x58_A Hypothetical protein 49 98.2 1.8E-06 6.2E-11 69.6 6.4 51 370-443 5-58 (62)
62 2iw5_B Protein corest, REST co 98.2 1.3E-06 4.5E-11 86.2 5.9 46 445-490 132-178 (235)
63 1wgx_A KIAA1903 protein; MYB D 98.1 7.9E-06 2.7E-10 67.9 7.9 53 371-442 6-58 (73)
64 3hm5_A DNA methyltransferase 1 98.1 4.6E-06 1.6E-10 72.2 6.6 56 433-491 20-81 (93)
65 2xag_B REST corepressor 1; ami 98.1 3.1E-06 1.1E-10 91.4 5.9 45 496-558 380-424 (482)
66 1fex_A TRF2-interacting telome 97.9 1.2E-05 4.2E-10 63.8 5.8 46 446-491 2-58 (59)
67 2cqq_A RSGI RUH-037, DNAJ homo 97.9 1.9E-05 6.6E-10 65.1 6.0 52 494-560 6-57 (72)
68 1wgx_A KIAA1903 protein; MYB D 97.8 3.4E-05 1.2E-09 64.0 6.9 47 445-491 7-58 (73)
69 2iw5_B Protein corest, REST co 97.8 2.1E-05 7.3E-10 77.6 6.2 50 494-561 131-180 (235)
70 1fex_A TRF2-interacting telome 97.7 3E-05 1E-09 61.6 3.9 55 374-442 3-58 (59)
71 3hm5_A DNA methyltransferase 1 97.6 0.00013 4.3E-09 63.2 6.6 57 481-559 19-80 (93)
72 2lr8_A CAsp8-associated protei 96.6 1.8E-05 6.2E-10 64.9 0.0 45 446-490 14-61 (70)
73 1ug2_A 2610100B20RIK gene prod 97.4 0.0002 6.8E-09 61.8 5.7 44 447-490 34-81 (95)
74 2yqk_A Arginine-glutamic acid 97.2 0.00066 2.3E-08 54.3 6.3 47 444-490 7-55 (63)
75 1ofc_X ISWI protein; nuclear p 97.2 0.0014 4.8E-08 67.3 10.2 99 447-559 111-273 (304)
76 4eef_G F-HB80.4, designed hema 97.1 4.9E-05 1.7E-09 63.2 -1.0 47 373-438 20-66 (74)
77 2xag_B REST corepressor 1; ami 97.1 0.00048 1.6E-08 74.6 6.1 46 445-490 379-425 (482)
78 2ebi_A DNA binding protein GT- 97.0 0.00049 1.7E-08 57.6 4.2 46 446-491 4-64 (86)
79 2crg_A Metastasis associated p 96.9 0.0014 4.8E-08 53.5 5.6 46 445-490 7-54 (70)
80 4eef_G F-HB80.4, designed hema 96.8 0.0002 6.9E-09 59.5 0.4 43 445-487 19-66 (74)
81 1ofc_X ISWI protein; nuclear p 96.8 0.0084 2.9E-07 61.6 12.2 96 374-491 111-274 (304)
82 4a69_C Nuclear receptor corepr 96.8 0.0014 4.8E-08 56.4 5.5 44 447-490 44-88 (94)
83 2ebi_A DNA binding protein GT- 96.8 0.00095 3.3E-08 55.8 4.1 57 495-559 3-63 (86)
84 2yqk_A Arginine-glutamic acid 96.6 0.0048 1.6E-07 49.2 6.5 48 492-557 5-53 (63)
85 4iej_A DNA methyltransferase 1 96.3 0.0064 2.2E-07 52.6 6.2 45 447-491 31-81 (93)
86 1ug2_A 2610100B20RIK gene prod 96.1 0.0078 2.7E-07 52.0 5.9 47 498-559 35-81 (95)
87 4a69_C Nuclear receptor corepr 95.5 0.022 7.7E-07 48.9 6.2 46 495-558 42-87 (94)
88 2crg_A Metastasis associated p 95.5 0.025 8.5E-07 46.1 6.1 45 495-557 7-52 (70)
89 4iej_A DNA methyltransferase 1 94.9 0.067 2.3E-06 46.3 7.2 45 497-559 31-80 (93)
90 4b4c_A Chromodomain-helicase-D 94.3 0.14 4.9E-06 48.5 8.9 41 445-485 6-52 (211)
91 2lr8_A CAsp8-associated protei 93.3 0.008 2.8E-07 49.4 0.0 47 498-560 16-62 (70)
92 2y9y_A Imitation switch protei 94.2 0.24 8.2E-06 52.2 10.9 98 447-559 124-289 (374)
93 4b4c_A Chromodomain-helicase-D 94.1 0.11 3.7E-06 49.4 7.6 28 446-473 134-162 (211)
94 2y9y_A Imitation switch protei 91.1 1.5 5E-05 46.3 11.6 47 445-491 227-290 (374)
95 1irz_A ARR10-B; helix-turn-hel 90.7 0.58 2E-05 37.9 6.4 45 445-489 6-56 (64)
96 3cz6_A DNA-binding protein RAP 69.1 11 0.00039 35.6 7.1 49 417-465 80-141 (168)
97 1irz_A ARR10-B; helix-turn-hel 65.9 17 0.00058 29.3 6.6 49 494-557 5-55 (64)
98 2xb0_X Chromo domain-containin 61.3 6.1 0.00021 39.8 4.0 29 445-473 167-196 (270)
99 2o8x_A Probable RNA polymerase 58.9 11 0.00039 28.3 4.4 42 448-490 15-56 (70)
100 1k78_A Paired box protein PAX5 56.9 96 0.0033 26.7 12.3 65 447-512 31-104 (149)
101 1ku3_A Sigma factor SIGA; heli 52.6 16 0.00055 28.3 4.3 42 449-490 11-55 (73)
102 2k27_A Paired box protein PAX- 51.9 1.1E+02 0.0038 26.8 10.3 64 447-512 24-97 (159)
103 2p7v_B Sigma-70, RNA polymeras 45.3 19 0.00065 27.5 3.7 42 450-491 7-51 (68)
104 1u78_A TC3 transposase, transp 44.8 1.4E+02 0.0047 25.0 10.4 71 417-488 24-102 (141)
105 1tc3_C Protein (TC3 transposas 44.3 51 0.0017 22.2 5.5 40 447-487 4-43 (51)
106 3i4p_A Transcriptional regulat 42.2 29 0.00098 31.2 4.9 40 452-491 3-43 (162)
107 1dw9_A Cyanate lyase; cyanate 39.7 66 0.0023 30.0 7.0 51 455-512 16-66 (156)
108 2rq5_A Protein jumonji; develo 39.0 33 0.0011 30.5 4.6 44 466-512 64-113 (121)
109 3hug_A RNA polymerase sigma fa 36.7 38 0.0013 27.4 4.4 39 452-490 40-78 (92)
110 1pdn_C Protein (PRD paired); p 35.3 1.8E+02 0.0061 23.6 9.3 65 447-512 16-89 (128)
111 1fse_A GERE; helix-turn-helix 35.1 69 0.0024 24.1 5.4 43 446-490 9-51 (74)
112 2li6_A SWI/SNF chromatin-remod 34.9 35 0.0012 29.7 4.1 27 466-492 71-98 (116)
113 1k78_A Paired box protein PAX5 32.9 2.3E+02 0.008 24.2 10.2 79 372-475 29-118 (149)
114 2lm1_A Lysine-specific demethy 32.9 39 0.0013 28.7 4.0 27 466-492 66-97 (107)
115 1tty_A Sigma-A, RNA polymerase 31.0 53 0.0018 26.4 4.3 27 464-490 37-63 (87)
116 2ou3_A Tellurite resistance pr 30.1 2.4E+02 0.0082 25.2 9.0 84 373-467 43-129 (161)
117 2eqy_A RBP2 like, jumonji, at 30.0 45 0.0015 29.3 4.0 27 466-492 64-95 (122)
118 1ig6_A MRF-2, modulator recogn 29.9 43 0.0015 28.5 3.8 27 466-492 55-87 (107)
119 3e7l_A Transcriptional regulat 28.9 85 0.0029 23.9 5.0 38 452-489 19-56 (63)
120 2jrz_A Histone demethylase jar 28.0 55 0.0019 28.5 4.2 38 455-492 43-93 (117)
121 1or7_A Sigma-24, RNA polymeras 27.1 62 0.0021 28.6 4.5 28 463-490 154-181 (194)
122 3ulq_B Transcriptional regulat 26.5 1.1E+02 0.0037 25.1 5.5 45 445-491 26-70 (90)
123 1x3u_A Transcriptional regulat 26.0 81 0.0028 24.1 4.5 41 449-491 17-57 (79)
124 2k27_A Paired box protein PAX- 25.2 3.4E+02 0.012 23.6 9.3 93 373-490 23-136 (159)
125 1c20_A DEAD ringer protein; DN 25.2 67 0.0023 28.3 4.2 39 454-492 54-106 (128)
126 2cxy_A BAF250B subunit, HBAF25 24.8 62 0.0021 28.5 4.0 26 467-492 74-104 (125)
127 2dbb_A Putative HTH-type trans 24.7 85 0.0029 27.3 4.8 39 453-491 10-49 (151)
128 1xsv_A Hypothetical UPF0122 pr 24.5 76 0.0026 27.1 4.4 41 449-490 26-66 (113)
129 1u78_A TC3 transposase, transp 24.4 3E+02 0.01 22.8 12.7 63 447-510 5-72 (141)
130 3dtp_E RLC, myosin regulatory 24.3 1.2E+02 0.0042 27.0 5.9 17 375-391 50-66 (196)
131 2e1c_A Putative HTH-type trans 24.0 1.1E+02 0.0038 27.8 5.7 41 452-492 27-68 (171)
132 2cyy_A Putative HTH-type trans 23.1 93 0.0032 27.2 4.8 38 454-491 9-47 (151)
133 1kkx_A Transcription regulator 22.5 60 0.0021 28.7 3.4 26 467-492 71-97 (123)
134 3mzy_A RNA polymerase sigma-H 22.4 82 0.0028 26.6 4.2 37 452-490 113-149 (164)
135 2xb0_X Chromo domain-containin 22.3 1.2E+02 0.0042 30.4 6.0 45 446-490 3-53 (270)
136 3c57_A Two component transcrip 22.2 1.4E+02 0.0049 24.3 5.5 43 447-491 26-68 (95)
137 2h5n_A Hypothetical protein PG 21.9 1.8E+02 0.006 25.5 6.3 86 373-466 32-118 (133)
138 2of5_H Leucine-rich repeat and 21.9 78 0.0027 27.5 4.0 30 454-483 13-42 (118)
139 1je8_A Nitrate/nitrite respons 21.0 1.4E+02 0.0048 23.6 5.1 43 447-491 20-62 (82)
140 1rp3_A RNA polymerase sigma fa 20.6 93 0.0032 28.2 4.4 38 453-490 191-228 (239)
141 2q1z_A RPOE, ECF SIGE; ECF sig 20.6 44 0.0015 29.4 2.1 31 460-490 146-176 (184)
142 2o71_A Death domain-containing 20.5 94 0.0032 27.1 4.2 28 456-483 26-53 (115)
143 2yqf_A Ankyrin-1; death domain 20.2 1.2E+02 0.0042 25.8 4.8 34 450-483 14-47 (111)
No 1
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=100.00 E-value=2.7e-37 Score=286.63 Aligned_cols=154 Identities=25% Similarity=0.458 Sum_probs=107.8
Q ss_pred CcCCCCCCHHHHHHHHHHHHHHHHHcCCCccchhhhhcccCCCcccccHHHHHhHCCCCCHHHHHHHHHHhcCCC-CCCC
Q 035712 370 FVRGKRFSKEEDEMIKRAVMNYIETHGLGEEGLNMVLHCRSHPEVKHCWKEIGSALPWRPYDSIYYRAHIIFQRD-ENRK 448 (563)
Q Consensus 370 ~vKkGkWT~EEDeiL~kaV~ky~~~hGlsee~L~~ll~s~r~~e~k~~Wk~IA~~LPgRs~kqcy~Rwrr~L~p~-kKGk 448 (563)
.+.+|+||+|||++|.++|..|+. .+|..||..||+|++.||+.||.++|+|. .+|+
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~----------------------~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~ 60 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGT----------------------DDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGP 60 (159)
T ss_dssp --------------------------------------------------------------CHHHHHHTTTCTTCCCSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC----------------------CCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCC
Confidence 356789999999999999999852 38999999999999999999999999985 8999
Q ss_pred CCHHHHHHHHHHHHHhCC-hhHHHHhhh-CCChhhHHHHHHHhhcccCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 035712 449 WTPEELELVRKFHEKHGS-NWKMLANAL-GKHRFHVKDAWRRVRLPNQKKGQWSQEEYQKLFDLVNMDLRMRALEEKKTK 526 (563)
Q Consensus 449 WT~EEDekLielV~kyGn-~W~~IAk~L-GRT~~QCRdRWr~iL~p~ikkG~WTqEED~kLielV~e~Lr~k~~~e~k~~ 526 (563)
||+|||..|+.+|..||. +|..||..| |||+.||++||.++|.|.+.+++||++||..|+.++. .
T Consensus 61 Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~-------------~ 127 (159)
T 1h89_C 61 WTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHK-------------R 127 (159)
T ss_dssp CCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHH-------------H
T ss_pred CChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHH-------------H
Confidence 999999999999999997 799999999 9999999999999999999999999999999999998 6
Q ss_pred cCCCCCCCChHHHHhHcCCCCHHHHHHHHHhccCCCC
Q 035712 527 HGMLRDNISWEAISDKLATRSNAICCMKWYDQLTSPM 563 (563)
Q Consensus 527 ~G~~~d~IsWs~IS~~LgtRS~~QCR~RW~~iL~p~M 563 (563)
+| .+|+.||..||+||+.||++||+.+|.+.|
T Consensus 128 ~g-----~~W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 128 LG-----NRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp HC-----SCHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred HC-----CCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 77 599999999999999999999999998764
No 2
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.98 E-value=2.4e-32 Score=245.49 Aligned_cols=125 Identities=21% Similarity=0.414 Sum_probs=97.9
Q ss_pred HHhHCCCCCHHHHHHHHHHhcCCC-CCCCCCHHHHHHHHHHHHHhCC-hhHHHHhhh-CCChhhHHHHHHHhhcccCCCC
Q 035712 421 IGSALPWRPYDSIYYRAHIIFQRD-ENRKWTPEELELVRKFHEKHGS-NWKMLANAL-GKHRFHVKDAWRRVRLPNQKKG 497 (563)
Q Consensus 421 IA~~LPgRs~kqcy~Rwrr~L~p~-kKGkWT~EEDekLielV~kyGn-~W~~IAk~L-GRT~~QCRdRWr~iL~p~ikkG 497 (563)
||..||+|++.||+.||.++|+|. .+|+||+|||++|+.+|..||. +|..||..| |||+.||++||.++|.|.+.+|
T Consensus 1 Ia~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~ 80 (128)
T 1h8a_C 1 MEAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKT 80 (128)
T ss_dssp ---------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCS
T ss_pred CccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccc
Confidence 789999999999999999999985 8999999999999999999997 799999999 8999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCCCCChHHHHhHcCCCCHHHHHHHHHhccCCCC
Q 035712 498 QWSQEEYQKLFDLVNMDLRMRALEEKKTKHGMLRDNISWEAISDKLATRSNAICCMKWYDQLTSPM 563 (563)
Q Consensus 498 ~WTqEED~kLielV~e~Lr~k~~~e~k~~~G~~~d~IsWs~IS~~LgtRS~~QCR~RW~~iL~p~M 563 (563)
+||++||..|+.+|. .+| .+|+.||..||+||+.||++||+.+|.+.|
T Consensus 81 ~WT~eEd~~L~~~~~-------------~~G-----~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 81 SWTEEEDRIIYQAHK-------------RLG-----NRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp CCCHHHHHHHHHHHH-------------HHC-----SCHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred cCCHHHHHHHHHHHH-------------HHC-----cCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 999999999999998 677 589999999999999999999999998754
No 3
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.94 E-value=1.9e-26 Score=200.08 Aligned_cols=101 Identities=25% Similarity=0.513 Sum_probs=94.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC-hhHHHHhhh-CCChhhHHHHHHHhhcccCCCCCCCHHHHHHHHHHHHhHHHHHHHHH
Q 035712 445 ENRKWTPEELELVRKFHEKHGS-NWKMLANAL-GKHRFHVKDAWRRVRLPNQKKGQWSQEEYQKLFDLVNMDLRMRALEE 522 (563)
Q Consensus 445 kKGkWT~EEDekLielV~kyGn-~W~~IAk~L-GRT~~QCRdRWr~iL~p~ikkG~WTqEED~kLielV~e~Lr~k~~~e 522 (563)
.+|+||+|||++|+.+|..||. +|..||..| |||+.||++||.++|.|.+.+|+||++||..|+.+|.
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~---------- 72 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHK---------- 72 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHH----------
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHH----------
Confidence 5799999999999999999998 799999999 8999999999999999999999999999999999998
Q ss_pred HhhhcCCCCCCCChHHHHhHcCCCCHHHHHHHHHhccCCCC
Q 035712 523 KKTKHGMLRDNISWEAISDKLATRSNAICCMKWYDQLTSPM 563 (563)
Q Consensus 523 ~k~~~G~~~d~IsWs~IS~~LgtRS~~QCR~RW~~iL~p~M 563 (563)
.+| .+|+.||..||+||+.||++||+.+|.+.|
T Consensus 73 ---~~G-----~~W~~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 73 ---RLG-----NRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp ---HHS-----SCHHHHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred ---HhC-----CCHHHHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 677 589999999999999999999999998754
No 4
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.93 E-value=6.6e-26 Score=198.24 Aligned_cols=97 Identities=22% Similarity=0.371 Sum_probs=92.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-hhHHHHhhh-CCChhhHHHHHHHhhcccCCCCCCCHHHHHHHHHHHHhHHHHHHHHHH
Q 035712 446 NRKWTPEELELVRKFHEKHGS-NWKMLANAL-GKHRFHVKDAWRRVRLPNQKKGQWSQEEYQKLFDLVNMDLRMRALEEK 523 (563)
Q Consensus 446 KGkWT~EEDekLielV~kyGn-~W~~IAk~L-GRT~~QCRdRWr~iL~p~ikkG~WTqEED~kLielV~e~Lr~k~~~e~ 523 (563)
+|+||+|||++|+.+|..||. +|..||..| |||+.||++||.++|.|.+.+|+||++||..|+.+|.
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~----------- 69 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYA----------- 69 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHH-----------
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHH-----------
Confidence 589999999999999999997 899999999 8999999999999999999999999999999999998
Q ss_pred hhhcCCCCCCCChHHHHhHcCCCCHHHHHHHHHhccC
Q 035712 524 KTKHGMLRDNISWEAISDKLATRSNAICCMKWYDQLT 560 (563)
Q Consensus 524 k~~~G~~~d~IsWs~IS~~LgtRS~~QCR~RW~~iL~ 560 (563)
.+| .+|+.||..||+||+.||++||+.++.
T Consensus 70 --~~G-----~~W~~Ia~~l~gRt~~~~k~rw~~l~r 99 (107)
T 2k9n_A 70 --EYG-----PKWNKISKFLKNRSDNNIRNRWMMIAR 99 (107)
T ss_dssp --HTC-----SCHHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred --HhC-----cCHHHHHHHCCCCCHHHHHHHHHHHHh
Confidence 688 489999999999999999999998764
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.93 E-value=7e-26 Score=203.56 Aligned_cols=99 Identities=25% Similarity=0.552 Sum_probs=94.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCChhHHHHhhh-CCChhhHHHHHHHhhcccCCCCCCCHHHHHHHHHHHHhHHHHHHHHH
Q 035712 444 DENRKWTPEELELVRKFHEKHGSNWKMLANAL-GKHRFHVKDAWRRVRLPNQKKGQWSQEEYQKLFDLVNMDLRMRALEE 522 (563)
Q Consensus 444 ~kKGkWT~EEDekLielV~kyGn~W~~IAk~L-GRT~~QCRdRWr~iL~p~ikkG~WTqEED~kLielV~e~Lr~k~~~e 522 (563)
.++|+||+|||++|+.+|..||.+|..||..| |||+.||++||.++|.|.+.+|+||++||..|+.+|.
T Consensus 9 ~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~---------- 78 (126)
T 3osg_A 9 AKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQ---------- 78 (126)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHH----------
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHH----------
Confidence 47899999999999999999999999999999 9999999999999999999999999999999999998
Q ss_pred HhhhcCCCCCCCChHHHHhHcCCCCHHHHHHHHHhccC
Q 035712 523 KKTKHGMLRDNISWEAISDKLATRSNAICCMKWYDQLT 560 (563)
Q Consensus 523 ~k~~~G~~~d~IsWs~IS~~LgtRS~~QCR~RW~~iL~ 560 (563)
.+| .+|+.||..|++||+.||++||+.++.
T Consensus 79 ---~~G-----~~W~~Ia~~l~gRt~~~~k~rw~~l~~ 108 (126)
T 3osg_A 79 ---EYG-----RQWAIIAKFFPGRTDIHIKNRWVTISN 108 (126)
T ss_dssp ---HHC-----SCHHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred ---HHC-----cCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 677 589999999999999999999998764
No 6
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.93 E-value=4.9e-26 Score=205.57 Aligned_cols=99 Identities=21% Similarity=0.473 Sum_probs=94.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-hhHHHHhhh-CCChhhHHHHHHHhhcccCCCCCCCHHHHHHHHHHHHhHHHHHHHHHH
Q 035712 446 NRKWTPEELELVRKFHEKHGS-NWKMLANAL-GKHRFHVKDAWRRVRLPNQKKGQWSQEEYQKLFDLVNMDLRMRALEEK 523 (563)
Q Consensus 446 KGkWT~EEDekLielV~kyGn-~W~~IAk~L-GRT~~QCRdRWr~iL~p~ikkG~WTqEED~kLielV~e~Lr~k~~~e~ 523 (563)
+|+||+|||++|+.+|..||. +|..||..| |||+.||++||.++|.|.+.+|+||++||..|+.+|.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~----------- 70 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYL----------- 70 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHH-----------
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHH-----------
Confidence 699999999999999999995 899999999 9999999999999999999999999999999999998
Q ss_pred hhhcCCCCCCCChHHHHhHcCCCCHHHHHHHHHhccCCC
Q 035712 524 KTKHGMLRDNISWEAISDKLATRSNAICCMKWYDQLTSP 562 (563)
Q Consensus 524 k~~~G~~~d~IsWs~IS~~LgtRS~~QCR~RW~~iL~p~ 562 (563)
.+| .+|+.||..|++||+.||++||+.+|.+.
T Consensus 71 --~~G-----~~W~~Ia~~l~gRt~~~~k~rw~~~l~~~ 102 (131)
T 3zqc_A 71 --KLG-----SKWSVIAKLIPGRTDNAIKNRWNSSISKR 102 (131)
T ss_dssp --HSC-----SCHHHHTTTSTTCCHHHHHHHHHHTTGGG
T ss_pred --HHC-----cCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 788 58999999999999999999999998764
No 7
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.93 E-value=2.5e-26 Score=207.50 Aligned_cols=108 Identities=25% Similarity=0.366 Sum_probs=100.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCccchhhhhcccCCCcccccHHHHHhHCCCCCHHHHHHHHHHhcCCC-CCCCCCH
Q 035712 373 GKRFSKEEDEMIKRAVMNYIETHGLGEEGLNMVLHCRSHPEVKHCWKEIGSALPWRPYDSIYYRAHIIFQRD-ENRKWTP 451 (563)
Q Consensus 373 kGkWT~EEDeiL~kaV~ky~~~hGlsee~L~~ll~s~r~~e~k~~Wk~IA~~LPgRs~kqcy~Rwrr~L~p~-kKGkWT~ 451 (563)
+|+||+|||++|..+|..|+ . .+|..||..||+|++.||+.||.++|+|. .+|+||+
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g----~------------------~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~ 59 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENG----P------------------QNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTP 59 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHC----S------------------CCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCH
T ss_pred CCCCCHHHHHHHHHHHHHhC----c------------------CCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCH
Confidence 47999999999999999983 1 28999999999999999999999999985 8999999
Q ss_pred HHHHHHHHHHHHhCChhHHHHhhh-CCChhhHHHHHHHhhcccCCCCCCCHH
Q 035712 452 EELELVRKFHEKHGSNWKMLANAL-GKHRFHVKDAWRRVRLPNQKKGQWSQE 502 (563)
Q Consensus 452 EEDekLielV~kyGn~W~~IAk~L-GRT~~QCRdRWr~iL~p~ikkG~WTqE 502 (563)
|||.+|+.+|..||++|..||.+| |||+.||++||+.+|.+.+..++|+.+
T Consensus 60 eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~ 111 (131)
T 3zqc_A 60 EEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKE 111 (131)
T ss_dssp HHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHHTTGGGCCCCTTSCC
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCCCccc
Confidence 999999999999999999999999 999999999999999988888888754
No 8
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.92 E-value=1.8e-25 Score=194.01 Aligned_cols=99 Identities=24% Similarity=0.416 Sum_probs=92.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHcCCCccchhhhhcccCCCcccccHHHHHhHCCCCCHHHHHHHHHHhcCCC-CCCCC
Q 035712 371 VRGKRFSKEEDEMIKRAVMNYIETHGLGEEGLNMVLHCRSHPEVKHCWKEIGSALPWRPYDSIYYRAHIIFQRD-ENRKW 449 (563)
Q Consensus 371 vKkGkWT~EEDeiL~kaV~ky~~~hGlsee~L~~ll~s~r~~e~k~~Wk~IA~~LPgRs~kqcy~Rwrr~L~p~-kKGkW 449 (563)
+++|+||++||++|.++|..|+. .+|..||..||+|++.||+.||.++|+|. .+|+|
T Consensus 2 l~k~~WT~eED~~L~~~v~~~g~----------------------~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~W 59 (105)
T 1gv2_A 2 LIKGPWTKEEDQRVIKLVQKYGP----------------------KRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSW 59 (105)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCT----------------------TCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC----------------------CcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCC
Confidence 46789999999999999999932 27999999999999999999999999986 89999
Q ss_pred CHHHHHHHHHHHHHhCChhHHHHhhh-CCChhhHHHHHHHhhc
Q 035712 450 TPEELELVRKFHEKHGSNWKMLANAL-GKHRFHVKDAWRRVRL 491 (563)
Q Consensus 450 T~EEDekLielV~kyGn~W~~IAk~L-GRT~~QCRdRWr~iL~ 491 (563)
|+|||.+|+.+|..||++|..||..| |||+.||++||+.++.
T Consensus 60 t~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~~~ 102 (105)
T 1gv2_A 60 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 102 (105)
T ss_dssp CHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999 9999999999999875
No 9
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.92 E-value=6.6e-25 Score=191.91 Aligned_cols=98 Identities=20% Similarity=0.370 Sum_probs=91.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCccchhhhhcccCCCcccccHHHHHhHCCCCCHHHHHHHHHHhcCCC-CCCCCCH
Q 035712 373 GKRFSKEEDEMIKRAVMNYIETHGLGEEGLNMVLHCRSHPEVKHCWKEIGSALPWRPYDSIYYRAHIIFQRD-ENRKWTP 451 (563)
Q Consensus 373 kGkWT~EEDeiL~kaV~ky~~~hGlsee~L~~ll~s~r~~e~k~~Wk~IA~~LPgRs~kqcy~Rwrr~L~p~-kKGkWT~ 451 (563)
+|+||+|||++|..+|..|+. .+|..||..||+|++.||+.||.++|+|. .+|+||+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~----------------------~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~ 58 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGA----------------------KDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSP 58 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCS----------------------SCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCH
T ss_pred CCCCCHHHHHHHHHHHHHHCC----------------------CCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCH
Confidence 478999999999999999931 38999999999999999999999999986 8999999
Q ss_pred HHHHHHHHHHHHhCChhHHHHhhh-CCChhhHHHHHHHhhcc
Q 035712 452 EELELVRKFHEKHGSNWKMLANAL-GKHRFHVKDAWRRVRLP 492 (563)
Q Consensus 452 EEDekLielV~kyGn~W~~IAk~L-GRT~~QCRdRWr~iL~p 492 (563)
|||.+|+.+|..||++|..||..| |||+.||++||+.++..
T Consensus 59 eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 59 EEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARH 100 (107)
T ss_dssp HHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999 99999999999998753
No 10
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.92 E-value=5.8e-25 Score=197.59 Aligned_cols=99 Identities=28% Similarity=0.496 Sum_probs=93.4
Q ss_pred CcCCCCCCHHHHHHHHHHHHHHHHHcCCCccchhhhhcccCCCcccccHHHHHhHCCCCCHHHHHHHHHHhcCCC-CCCC
Q 035712 370 FVRGKRFSKEEDEMIKRAVMNYIETHGLGEEGLNMVLHCRSHPEVKHCWKEIGSALPWRPYDSIYYRAHIIFQRD-ENRK 448 (563)
Q Consensus 370 ~vKkGkWT~EEDeiL~kaV~ky~~~hGlsee~L~~ll~s~r~~e~k~~Wk~IA~~LPgRs~kqcy~Rwrr~L~p~-kKGk 448 (563)
..++|+||+|||++|..+|..|+. .|..||..||+|+..||+.||.++|+|. .+|+
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G~-----------------------~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~ 64 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHGS-----------------------DWKMIAATFPNRNARQCRDRWKNYLAPSISHTP 64 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHTT-----------------------CHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-----------------------CHHHHHHHcCCCCHHHHHHHHhhhccccccccc
Confidence 457789999999999999999943 8999999999999999999999999975 8999
Q ss_pred CCHHHHHHHHHHHHHhCChhHHHHhhh-CCChhhHHHHHHHhhc
Q 035712 449 WTPEELELVRKFHEKHGSNWKMLANAL-GKHRFHVKDAWRRVRL 491 (563)
Q Consensus 449 WT~EEDekLielV~kyGn~W~~IAk~L-GRT~~QCRdRWr~iL~ 491 (563)
||+|||++|+.+|..||++|..||..| |||+.||++||+.++.
T Consensus 65 WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~~ 108 (126)
T 3osg_A 65 WTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISN 108 (126)
T ss_dssp CCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999 9999999999999873
No 11
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.91 E-value=5.5e-24 Score=191.09 Aligned_cols=100 Identities=25% Similarity=0.417 Sum_probs=93.0
Q ss_pred CcCCCCCCHHHHHHHHHHHHHHHHHcCCCccchhhhhcccCCCcccccHHHHHhHCCCCCHHHHHHHHHHhcCCC-CCCC
Q 035712 370 FVRGKRFSKEEDEMIKRAVMNYIETHGLGEEGLNMVLHCRSHPEVKHCWKEIGSALPWRPYDSIYYRAHIIFQRD-ENRK 448 (563)
Q Consensus 370 ~vKkGkWT~EEDeiL~kaV~ky~~~hGlsee~L~~ll~s~r~~e~k~~Wk~IA~~LPgRs~kqcy~Rwrr~L~p~-kKGk 448 (563)
.+++|+||+|||++|.++|..|+. ..|..||..||+|+..||+.||.++|+|. .+|+
T Consensus 24 ~~~k~~Wt~eED~~L~~~v~~~g~----------------------~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~ 81 (128)
T 1h8a_C 24 ELNKGPWTKEEDQRVIEHVQKYGP----------------------KRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTS 81 (128)
T ss_dssp TCCCSCCCHHHHHHHHHHHHHTCS----------------------CCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCC----------------------CCHHHHHHHhcCCcHHHHHHHHHHhccccccccc
Confidence 357789999999999999998831 27999999999999999999999999985 8999
Q ss_pred CCHHHHHHHHHHHHHhCChhHHHHhhh-CCChhhHHHHHHHhhc
Q 035712 449 WTPEELELVRKFHEKHGSNWKMLANAL-GKHRFHVKDAWRRVRL 491 (563)
Q Consensus 449 WT~EEDekLielV~kyGn~W~~IAk~L-GRT~~QCRdRWr~iL~ 491 (563)
||+|||..|+.+|..||++|..||..| |||+.||++||+.++.
T Consensus 82 WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~ 125 (128)
T 1h8a_C 82 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMR 125 (128)
T ss_dssp CCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTT
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999 9999999999998874
No 12
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.89 E-value=4.3e-24 Score=198.06 Aligned_cols=102 Identities=32% Similarity=0.687 Sum_probs=61.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC-hhHHHHhhh-CCChhhHHHHHHHhhcccCCCCCCCHHHHHHHHHHHHhHHHHHHHHH
Q 035712 445 ENRKWTPEELELVRKFHEKHGS-NWKMLANAL-GKHRFHVKDAWRRVRLPNQKKGQWSQEEYQKLFDLVNMDLRMRALEE 522 (563)
Q Consensus 445 kKGkWT~EEDekLielV~kyGn-~W~~IAk~L-GRT~~QCRdRWr~iL~p~ikkG~WTqEED~kLielV~e~Lr~k~~~e 522 (563)
.+++||+|||++|+.+|..||. +|..||..| |||+.||+.||.++|.|.+.+|+||++||..|+.+|.
T Consensus 5 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~---------- 74 (159)
T 1h89_C 5 GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQ---------- 74 (159)
T ss_dssp --------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHH----------
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHH----------
Confidence 5789999999999999999996 899999999 8999999999999999999999999999999999998
Q ss_pred HhhhcCCCCCCCChHHHHhHcCCCCHHHHHHHHHhccCCCC
Q 035712 523 KKTKHGMLRDNISWEAISDKLATRSNAICCMKWYDQLTSPM 563 (563)
Q Consensus 523 ~k~~~G~~~d~IsWs~IS~~LgtRS~~QCR~RW~~iL~p~M 563 (563)
.+|. .+|..||..|++||+.||++||++.|.|.+
T Consensus 75 ---~~g~----~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~ 108 (159)
T 1h89_C 75 ---KYGP----KRWSVIAKHLKGRIGKQCRERWHNHLNPEV 108 (159)
T ss_dssp ---HHCS----CCHHHHHHTSTTCCHHHHHHHHHHTTCTTS
T ss_pred ---HhCc----ccHHHHHHHcCCCCHHHHHHHHHHHhCccc
Confidence 6773 589999999999999999999999998863
No 13
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.1e-17 Score=134.45 Aligned_cols=61 Identities=26% Similarity=0.432 Sum_probs=58.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-ChhHHHHhhh-CCChhhHHHHHHHhhcccCCCCCCCHHHH
Q 035712 444 DENRKWTPEELELVRKFHEKHG-SNWKMLANAL-GKHRFHVKDAWRRVRLPNQKKGQWSQEEY 504 (563)
Q Consensus 444 ~kKGkWT~EEDekLielV~kyG-n~W~~IAk~L-GRT~~QCRdRWr~iL~p~ikkG~WTqEED 504 (563)
.++|+||+|||++|+.+|.+|| .+|..||..| |||+.||++||.++|.|.+++++||++||
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 3789999999999999999999 6999999999 79999999999999999999999999987
No 14
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.54 E-value=1.2e-14 Score=143.72 Aligned_cols=115 Identities=13% Similarity=0.174 Sum_probs=90.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCh------hHHHHhhh-CCChhhHHHHHHHhhcccCC---------------------
Q 035712 444 DENRKWTPEELELVRKFHEKHGSN------WKMLANAL-GKHRFHVKDAWRRVRLPNQK--------------------- 495 (563)
Q Consensus 444 ~kKGkWT~EEDekLielV~kyGn~------W~~IAk~L-GRT~~QCRdRWr~iL~p~ik--------------------- 495 (563)
..+++||+|||+.|+++|.+||+. |..||.+| |||+.||++||+.+|.+.+.
T Consensus 6 ~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~ik 85 (246)
T 1ign_A 6 HNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNLIK 85 (246)
T ss_dssp --CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCBCE
T ss_pred CCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCcee
Confidence 357899999999999999999885 99999999 99999999999999988775
Q ss_pred --------CCCCCHHHHHHHHHHHHhHH-HHHHH---------------HH----Hhh---------------------h
Q 035712 496 --------KGQWSQEEYQKLFDLVNMDL-RMRAL---------------EE----KKT---------------------K 526 (563)
Q Consensus 496 --------kG~WTqEED~kLielV~e~L-r~k~~---------------~e----~k~---------------------~ 526 (563)
+..||.+||-.|+..+..+. +.... +. .+. .
T Consensus 86 is~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 165 (246)
T 1ign_A 86 TKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQSR 165 (246)
T ss_dssp ESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCCCC
T ss_pred eeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhccccc
Confidence 78999999999999998633 11110 00 000 0
Q ss_pred cCCCCCCCChHHHHhHcCCCCHHHHHHHHHhcc
Q 035712 527 HGMLRDNISWEAISDKLATRSNAICCMKWYDQL 559 (563)
Q Consensus 527 ~G~~~d~IsWs~IS~~LgtRS~~QCR~RW~~iL 559 (563)
.|++ .--.|..||+.+|+||..+.|+||...|
T Consensus 166 ~gp~-~~~~fk~ia~~~P~HT~~SWRdRyrKfl 197 (246)
T 1ign_A 166 RGPI-AREFFKHFAEEHAAHTENAWRDRFRKFL 197 (246)
T ss_dssp CCCC-CTTHHHHHHHHTTTSCHHHHHHHHHHTH
T ss_pred cCcc-hHHHHHHHHHHCCCCChhhHHHHHHHHH
Confidence 0110 0116999999999999999999999876
No 15
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=5e-15 Score=120.46 Aligned_cols=63 Identities=24% Similarity=0.341 Sum_probs=57.4
Q ss_pred CcCCCCCCHHHHHHHHHHHHHHHHHcCCCccchhhhhcccCCCcccccHHHHHhHCCCCCHHHHHHHHHHhcCCC-CCCC
Q 035712 370 FVRGKRFSKEEDEMIKRAVMNYIETHGLGEEGLNMVLHCRSHPEVKHCWKEIGSALPWRPYDSIYYRAHIIFQRD-ENRK 448 (563)
Q Consensus 370 ~vKkGkWT~EEDeiL~kaV~ky~~~hGlsee~L~~ll~s~r~~e~k~~Wk~IA~~LPgRs~kqcy~Rwrr~L~p~-kKGk 448 (563)
.+++|+||++||++|..+|..|+ . ..|..||..||+|+..||+.||.++|+|. .+++
T Consensus 6 ~~k~~~Wt~eED~~L~~~v~~~G----~------------------~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~ 63 (70)
T 2dim_A 6 SGKGGVWRNTEDEILKAAVMKYG----K------------------NQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTE 63 (70)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHTC----S------------------SCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHC----c------------------CCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCC
Confidence 56788999999999999999883 1 28999999999999999999999999985 8999
Q ss_pred CCHHHH
Q 035712 449 WTPEEL 454 (563)
Q Consensus 449 WT~EED 454 (563)
||+|||
T Consensus 64 wt~eEd 69 (70)
T 2dim_A 64 WSGPSS 69 (70)
T ss_dssp SCCSCC
T ss_pred CChHhc
Confidence 999997
No 16
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.51 E-value=1.7e-14 Score=119.61 Aligned_cols=62 Identities=29% Similarity=0.438 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHhcCCC-CCCCCCHHHHHHHHHHHHHhCChhHHHHhhhCCChhhHHHHHHHhh
Q 035712 429 PYDSIYYRAHIIFQRD-ENRKWTPEELELVRKFHEKHGSNWKMLANALGKHRFHVKDAWRRVR 490 (563)
Q Consensus 429 s~kqcy~Rwrr~L~p~-kKGkWT~EEDekLielV~kyGn~W~~IAk~LGRT~~QCRdRWr~iL 490 (563)
+.-++--||.++|+|. .+|+||+|||++|+++|.+||++|+.||+.||||+.||++||+.+.
T Consensus 5 ~~~~~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~lgRt~~q~knRw~~L~ 67 (73)
T 2llk_A 5 HHHSSGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAALGRSASSVKDRCRLMK 67 (73)
T ss_dssp --------------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHHTSCHHHHHHHHHHCS
T ss_pred cccccCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3445667999999986 8999999999999999999999999999999999999999999654
No 17
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.46 E-value=7.2e-14 Score=107.24 Aligned_cols=49 Identities=33% Similarity=0.730 Sum_probs=46.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC-hhHHHHhhh-CCChhhHHHHHHHhhccc
Q 035712 445 ENRKWTPEELELVRKFHEKHGS-NWKMLANAL-GKHRFHVKDAWRRVRLPN 493 (563)
Q Consensus 445 kKGkWT~EEDekLielV~kyGn-~W~~IAk~L-GRT~~QCRdRWr~iL~p~ 493 (563)
.+++||+|||.+|+++|..||. +|..||..| |||+.||++||.++|+|.
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 4699999999999999999999 999999999 899999999999999873
No 18
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.44 E-value=1.3e-13 Score=108.85 Aligned_cols=52 Identities=29% Similarity=0.512 Sum_probs=48.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-hhHHHHhhh-CCChhhHHHHHHHhhcccCC
Q 035712 444 DENRKWTPEELELVRKFHEKHGS-NWKMLANAL-GKHRFHVKDAWRRVRLPNQK 495 (563)
Q Consensus 444 ~kKGkWT~EEDekLielV~kyGn-~W~~IAk~L-GRT~~QCRdRWr~iL~p~ik 495 (563)
..+++||+|||++|+++|..||. +|..||..| |||+.||++||.++|.|.+.
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 37899999999999999999995 999999999 89999999999999988653
No 19
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.44 E-value=9.9e-14 Score=106.59 Aligned_cols=49 Identities=27% Similarity=0.533 Sum_probs=46.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC-hhHHHHhhh-CCChhhHHHHHHHhhccc
Q 035712 445 ENRKWTPEELELVRKFHEKHGS-NWKMLANAL-GKHRFHVKDAWRRVRLPN 493 (563)
Q Consensus 445 kKGkWT~EEDekLielV~kyGn-~W~~IAk~L-GRT~~QCRdRWr~iL~p~ 493 (563)
.+|+||+|||.+|+++|..||+ +|..||..| |||+.||++||.++|.|.
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 5799999999999999999998 799999999 899999999999999873
No 20
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=6.7e-14 Score=112.58 Aligned_cols=58 Identities=12% Similarity=0.277 Sum_probs=51.5
Q ss_pred hcCCC-CCCCCCHHHHHHHHHHHHHhCChhHHHHhhhCCChhhHHHHHHHhhcccCCCC
Q 035712 440 IFQRD-ENRKWTPEELELVRKFHEKHGSNWKMLANALGKHRFHVKDAWRRVRLPNQKKG 497 (563)
Q Consensus 440 ~L~p~-kKGkWT~EEDekLielV~kyGn~W~~IAk~LGRT~~QCRdRWr~iL~p~ikkG 497 (563)
+|+|. .+++||+|||.+|+.+|..||++|..||.++|||+.||++||.++|.+.++++
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~~~gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHHHHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhcccCcCHHHHHHHHHHHhChHhcCC
Confidence 46664 89999999999999999999999999999559999999999999998765544
No 21
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.38 E-value=8.4e-13 Score=130.74 Aligned_cols=104 Identities=23% Similarity=0.289 Sum_probs=86.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHcCCCccchhhhhcccCCCcccccHHHHHhHCCCCCHHHHHHHHHHhcCCC-C----
Q 035712 371 VRGKRFSKEEDEMIKRAVMNYIETHGLGEEGLNMVLHCRSHPEVKHCWKEIGSALPWRPYDSIYYRAHIIFQRD-E---- 445 (563)
Q Consensus 371 vKkGkWT~EEDeiL~kaV~ky~~~hGlsee~L~~ll~s~r~~e~k~~Wk~IA~~LPgRs~kqcy~Rwrr~L~p~-k---- 445 (563)
+.+++||+|||++|.++|..|+.. .....+|..||..|||||..||+.||+.+|.+. .
T Consensus 6 ~~k~~FT~EED~~Ile~v~k~Gn~-----------------r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~ 68 (246)
T 1ign_A 6 HNKASFTDEEDEFILDVVRKNPTR-----------------RTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYE 68 (246)
T ss_dssp --CCCCCHHHHHHHHHHHHTSGGG-----------------TTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEEC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCcC-----------------ccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccc
Confidence 456799999999999999988541 011236999999999999999999999988753 2
Q ss_pred -------------------------CCCCCHHHHHHHHHHHHH-h-----------------------------------
Q 035712 446 -------------------------NRKWTPEELELVRKFHEK-H----------------------------------- 464 (563)
Q Consensus 446 -------------------------KGkWT~EEDekLielV~k-y----------------------------------- 464 (563)
+.+||.+||-.|...+.+ |
T Consensus 69 ~ded~~Li~d~~Gn~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~ 148 (246)
T 1ign_A 69 VDKFGKLVRDDDGNLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPN 148 (246)
T ss_dssp BCTTSCBCBCTTSCBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------
T ss_pred cCcchhhhhccCCCceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCcc
Confidence 799999999999998876 1
Q ss_pred ------------------CC----hhHHHHhhh-CCChhhHHHHHHHhhc
Q 035712 465 ------------------GS----NWKMLANAL-GKHRFHVKDAWRRVRL 491 (563)
Q Consensus 465 ------------------Gn----~W~~IAk~L-GRT~~QCRdRWr~iL~ 491 (563)
|+ -|..||+.+ +||..++++||+.+|.
T Consensus 149 ~~~~~~~~f~~~~~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~ 198 (246)
T 1ign_A 149 HVPGSEPNFAAYRTQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLL 198 (246)
T ss_dssp ------------CCCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHH
T ss_pred ccccCCcchhhhccccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHh
Confidence 22 799999999 8999999999999984
No 22
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.38 E-value=4.8e-13 Score=107.96 Aligned_cols=51 Identities=29% Similarity=0.577 Sum_probs=46.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-hhHHHHhhh---CCChhhHHHHHHHhhcccC
Q 035712 444 DENRKWTPEELELVRKFHEKHGS-NWKMLANAL---GKHRFHVKDAWRRVRLPNQ 494 (563)
Q Consensus 444 ~kKGkWT~EEDekLielV~kyGn-~W~~IAk~L---GRT~~QCRdRWr~iL~p~i 494 (563)
.++++||+|||++|+++|.+||. +|..||..+ |||+.||++||++++.+.+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 47899999999999999999996 999999974 7999999999999987765
No 23
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.37 E-value=6.8e-13 Score=107.69 Aligned_cols=57 Identities=21% Similarity=0.333 Sum_probs=52.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-hhHHHHhhhC---CChhhHHHHHHHhhcccCCCCCCC
Q 035712 444 DENRKWTPEELELVRKFHEKHGS-NWKMLANALG---KHRFHVKDAWRRVRLPNQKKGQWS 500 (563)
Q Consensus 444 ~kKGkWT~EEDekLielV~kyGn-~W~~IAk~LG---RT~~QCRdRWr~iL~p~ikkG~WT 500 (563)
..+++||+|||++|+.+|.+||. +|..||..|+ ||+.||++||+++|.|.+.++.++
T Consensus 8 ~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 8 RKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp SSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 37899999999999999999995 9999999994 999999999999999988887654
No 24
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.37 E-value=4.9e-13 Score=120.60 Aligned_cols=69 Identities=19% Similarity=0.395 Sum_probs=64.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-hhHHHHhhh-----CCChhhHHHHHHHhhc-----ccCCCC-CCCHHHHHHHHHHH
Q 035712 444 DENRKWTPEELELVRKFHEKHGS-NWKMLANAL-----GKHRFHVKDAWRRVRL-----PNQKKG-QWSQEEYQKLFDLV 511 (563)
Q Consensus 444 ~kKGkWT~EEDekLielV~kyGn-~W~~IAk~L-----GRT~~QCRdRWr~iL~-----p~ikkG-~WTqEED~kLielV 511 (563)
..+++||+|||+.|+++|.+||. +|+.|+..+ |||+.||++||++++. |.+++| +|+++++.+|+.+.
T Consensus 15 r~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv~~~h 94 (121)
T 2juh_A 15 RIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAH 94 (121)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHHHHHH
Confidence 47899999999999999999999 999999983 8999999999999997 888889 99999999999888
Q ss_pred H
Q 035712 512 N 512 (563)
Q Consensus 512 ~ 512 (563)
.
T Consensus 95 ~ 95 (121)
T 2juh_A 95 A 95 (121)
T ss_dssp H
T ss_pred H
Confidence 6
No 25
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.37 E-value=9.2e-13 Score=103.96 Aligned_cols=56 Identities=25% Similarity=0.592 Sum_probs=51.2
Q ss_pred cccCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCCCCChHHHHhHcCCCCHHHHHHHHHhccCCCC
Q 035712 491 LPNQKKGQWSQEEYQKLFDLVNMDLRMRALEEKKTKHGMLRDNISWEAISDKLATRSNAICCMKWYDQLTSPM 563 (563)
Q Consensus 491 ~p~ikkG~WTqEED~kLielV~e~Lr~k~~~e~k~~~G~~~d~IsWs~IS~~LgtRS~~QCR~RW~~iL~p~M 563 (563)
.|.+.+++||++||.+|+++|. .+|. .+|..||..|++||..||++||+++|.|.+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~-------------~~G~----~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVR-------------QFGQ----QDWKFLASHFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHH-------------HTCT----TCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHH-------------HhCC----CCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence 4678999999999999999998 6773 599999999999999999999999999875
No 26
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.35 E-value=1.3e-12 Score=118.12 Aligned_cols=69 Identities=22% Similarity=0.420 Sum_probs=62.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-hhHHHHhhh-----CCChhhHHHHHHHhh-----cccCCCCCCCHHH-HHHHHHHH
Q 035712 444 DENRKWTPEELELVRKFHEKHGS-NWKMLANAL-----GKHRFHVKDAWRRVR-----LPNQKKGQWSQEE-YQKLFDLV 511 (563)
Q Consensus 444 ~kKGkWT~EEDekLielV~kyGn-~W~~IAk~L-----GRT~~QCRdRWr~iL-----~p~ikkG~WTqEE-D~kLielV 511 (563)
..+++||+|||+.|+++|.+||. +|+.|+..+ |||..||++||++++ .|.+++|.|+++| +.+|+.+.
T Consensus 29 r~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~~~h 108 (122)
T 2roh_A 29 RIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVLAAQ 108 (122)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHH
Confidence 47899999999999999999999 999999973 899999999999999 6889999999999 67777776
Q ss_pred H
Q 035712 512 N 512 (563)
Q Consensus 512 ~ 512 (563)
.
T Consensus 109 ~ 109 (122)
T 2roh_A 109 A 109 (122)
T ss_dssp H
T ss_pred H
Confidence 5
No 27
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.34 E-value=1e-12 Score=107.58 Aligned_cols=53 Identities=26% Similarity=0.342 Sum_probs=48.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCChhHHHHhhh-CCChhhHHHHHHHhhcccCCC
Q 035712 444 DENRKWTPEELELVRKFHEKHGSNWKMLANAL-GKHRFHVKDAWRRVRLPNQKK 496 (563)
Q Consensus 444 ~kKGkWT~EEDekLielV~kyGn~W~~IAk~L-GRT~~QCRdRWr~iL~p~ikk 496 (563)
..+++||+|||.+|+++|..||++|..||.+| |||+.||++||+.++.+..+.
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred cCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 37899999999999999999999999999999 899999999999998654444
No 28
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.34 E-value=1.5e-12 Score=103.25 Aligned_cols=49 Identities=18% Similarity=0.302 Sum_probs=46.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-ChhHHHHhhh-CCChhhHHHHHHHhhcc
Q 035712 444 DENRKWTPEELELVRKFHEKHG-SNWKMLANAL-GKHRFHVKDAWRRVRLP 492 (563)
Q Consensus 444 ~kKGkWT~EEDekLielV~kyG-n~W~~IAk~L-GRT~~QCRdRWr~iL~p 492 (563)
..+++||+|||.+|+++|..|| .+|..||..| |||+.||++||.++|.+
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 4789999999999999999999 6999999999 89999999999999865
No 29
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.34 E-value=1.5e-12 Score=99.91 Aligned_cols=52 Identities=35% Similarity=0.663 Sum_probs=47.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCCCCChHHHHhHcCCCCHHHHHHHHHhccCCC
Q 035712 494 QKKGQWSQEEYQKLFDLVNMDLRMRALEEKKTKHGMLRDNISWEAISDKLATRSNAICCMKWYDQLTSP 562 (563)
Q Consensus 494 ikkG~WTqEED~kLielV~e~Lr~k~~~e~k~~~G~~~d~IsWs~IS~~LgtRS~~QCR~RW~~iL~p~ 562 (563)
+++|+||++||..|+++|. .+|. .+|..||..|++||..||++||++.|+|.
T Consensus 1 l~k~~Wt~eED~~L~~~v~-------------~~G~----~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQ-------------KYGP----KRWSVIAKHLKGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHH-------------HHCT----TCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHH-------------HHCc----ChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 4689999999999999998 6773 48999999999999999999999999984
No 30
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.33 E-value=1.6e-12 Score=100.48 Aligned_cols=47 Identities=26% Similarity=0.454 Sum_probs=43.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC-hhHHHHhhhC---CChhhHHHHHHHhhc
Q 035712 445 ENRKWTPEELELVRKFHEKHGS-NWKMLANALG---KHRFHVKDAWRRVRL 491 (563)
Q Consensus 445 kKGkWT~EEDekLielV~kyGn-~W~~IAk~LG---RT~~QCRdRWr~iL~ 491 (563)
++++||+|||++|+.+|..||. +|..||..|+ ||+.||++||++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 4689999999999999999995 9999999995 999999999999874
No 31
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.32 E-value=1.7e-12 Score=99.53 Aligned_cols=52 Identities=31% Similarity=0.647 Sum_probs=46.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCCCCChHHHHhHcCCCCHHHHHHHHHhccCCC
Q 035712 494 QKKGQWSQEEYQKLFDLVNMDLRMRALEEKKTKHGMLRDNISWEAISDKLATRSNAICCMKWYDQLTSP 562 (563)
Q Consensus 494 ikkG~WTqEED~kLielV~e~Lr~k~~~e~k~~~G~~~d~IsWs~IS~~LgtRS~~QCR~RW~~iL~p~ 562 (563)
+++++||++||..|+++|. .+|. .+|..||..|++||+.||+.||+++|+|.
T Consensus 1 i~~~~Wt~eED~~L~~~v~-------------~~G~----~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVE-------------QNGT----DDWKVIANYLPNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHH-------------HHCS----SCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHH-------------HhCC----CCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 4689999999999999998 6773 49999999999999999999999999984
No 32
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.27 E-value=5.4e-12 Score=99.57 Aligned_cols=48 Identities=21% Similarity=0.430 Sum_probs=44.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC-ChhHHHHhhhC--CChhhHHHHHHHhh
Q 035712 443 RDENRKWTPEELELVRKFHEKHG-SNWKMLANALG--KHRFHVKDAWRRVR 490 (563)
Q Consensus 443 p~kKGkWT~EEDekLielV~kyG-n~W~~IAk~LG--RT~~QCRdRWr~iL 490 (563)
|..+++||+|||.+|+++|.+|| .+|..||..|+ ||+.||++||.+++
T Consensus 6 p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 6 SGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 45688999999999999999999 69999999995 99999999999875
No 33
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.27 E-value=5.3e-12 Score=104.68 Aligned_cols=60 Identities=23% Similarity=0.233 Sum_probs=46.2
Q ss_pred HHHHHHHhhcccCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCCCCChHHHHhHcCCCCHHHHHHHHHhccC
Q 035712 482 VKDAWRRVRLPNQKKGQWSQEEYQKLFDLVNMDLRMRALEEKKTKHGMLRDNISWEAISDKLATRSNAICCMKWYDQLT 560 (563)
Q Consensus 482 CRdRWr~iL~p~ikkG~WTqEED~kLielV~e~Lr~k~~~e~k~~~G~~~d~IsWs~IS~~LgtRS~~QCR~RW~~iL~ 560 (563)
+.-||.++|+|.+.+|+||+|||.+|+++|. .+| ..|+.||..| +||+.||++||+.+..
T Consensus 9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~-------------~~G-----~kW~~IA~~l-gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRI-------------KHG-----NDWATIGAAL-GRSASSVKDRCRLMKD 68 (73)
T ss_dssp ----------CCCCCCSSCHHHHHHHHHHHH-------------HHS-----SCHHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred cCcceeeecCCCCCCCCCCHHHHHHHHHHHH-------------HHC-----CCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 4568999999999999999999999999998 788 4799999999 9999999999997543
No 34
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.26 E-value=9.1e-12 Score=112.36 Aligned_cols=80 Identities=15% Similarity=0.120 Sum_probs=70.8
Q ss_pred CCcCCCCCCHHHHHHHHHHHHHHHHHcCCCccchhhhhcccCCCcccccHHHHHhH----CCCCCHHHHHHHHHHhcC--
Q 035712 369 GFVRGKRFSKEEDEMIKRAVMNYIETHGLGEEGLNMVLHCRSHPEVKHCWKEIGSA----LPWRPYDSIYYRAHIIFQ-- 442 (563)
Q Consensus 369 ~~vKkGkWT~EEDeiL~kaV~ky~~~hGlsee~L~~ll~s~r~~e~k~~Wk~IA~~----LPgRs~kqcy~Rwrr~L~-- 442 (563)
...+.++||+|||++|...|..|+. +.|..|+.. ||+||..+|.+||++++.
T Consensus 13 ~rr~r~~WT~EEd~~L~~gV~k~G~----------------------G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 13 QRRIRRPFSVAEVEALVEAVEHLGT----------------------GRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHHGG----------------------GCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCC----------------------CCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 4457789999999999999999952 389999998 589999999999999885
Q ss_pred ---CC-CCC-CCCHHHHHHHHHHHHHhCChhHH
Q 035712 443 ---RD-ENR-KWTPEELELVRKFHEKHGSNWKM 470 (563)
Q Consensus 443 ---p~-kKG-kWT~EEDekLielV~kyGn~W~~ 470 (563)
|. .+| +|+++|+.+|+.++..||+.|..
T Consensus 71 ~~~p~~krg~~~p~e~~~rv~~~h~~~gn~~~~ 103 (121)
T 2juh_A 71 SIAPQQRRGEPVPQDLLDRVLAAHAYWSQQQGK 103 (121)
T ss_dssp HTCSTTCCCSCCCHHHHHHHHHHHHHHHHHHCC
T ss_pred ccCCcccCCCCCCHHHHHHHHHHHHHHccchhc
Confidence 54 667 99999999999999999999976
No 35
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=4.7e-12 Score=104.03 Aligned_cols=56 Identities=21% Similarity=0.306 Sum_probs=50.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC------ChhHHHHhhh-CCChhhHHHHHHHhhcccCCCCCC
Q 035712 444 DENRKWTPEELELVRKFHEKHG------SNWKMLANAL-GKHRFHVKDAWRRVRLPNQKKGQW 499 (563)
Q Consensus 444 ~kKGkWT~EEDekLielV~kyG------n~W~~IAk~L-GRT~~QCRdRWr~iL~p~ikkG~W 499 (563)
..+++||+|||.+|+++|..|| .+|..||.+| |||+.||++||+++|.+.++.|..
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~~ 68 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGIP 68 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 3689999999999999999999 6999999999 899999999999999876666643
No 36
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.23 E-value=1.5e-11 Score=97.45 Aligned_cols=54 Identities=17% Similarity=0.496 Sum_probs=49.1
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCCCCChHHHHhHcCCCCHHHHHHHHHhccCCC
Q 035712 492 PNQKKGQWSQEEYQKLFDLVNMDLRMRALEEKKTKHGMLRDNISWEAISDKLATRSNAICCMKWYDQLTSP 562 (563)
Q Consensus 492 p~ikkG~WTqEED~kLielV~e~Lr~k~~~e~k~~~G~~~d~IsWs~IS~~LgtRS~~QCR~RW~~iL~p~ 562 (563)
+.+.+++||++||.+|+++|. .+|. .+|..||..|++||+.||+.||.++|.+.
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~-------------~~G~----~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVM-------------DCGF----GNWQDVANQMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHH-------------HTCT----TCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCHHHHHHHHHHHH-------------HHCc----CcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 467899999999999999998 6774 49999999999999999999999998764
No 37
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=6.7e-12 Score=100.87 Aligned_cols=54 Identities=28% Similarity=0.432 Sum_probs=49.4
Q ss_pred hhcccCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCCCCChHHHHhHcCCCCHHHHHHHHHhccCC
Q 035712 489 VRLPNQKKGQWSQEEYQKLFDLVNMDLRMRALEEKKTKHGMLRDNISWEAISDKLATRSNAICCMKWYDQLTS 561 (563)
Q Consensus 489 iL~p~ikkG~WTqEED~kLielV~e~Lr~k~~~e~k~~~G~~~d~IsWs~IS~~LgtRS~~QCR~RW~~iL~p 561 (563)
+|+|.+.+++||++||.+|+.+|. .+| .+|..||. |++||..||++||+.+|.|
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~-------------~~g-----~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~ 55 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAK-------------LMP-----TQWRTIAP-IIGRTAAQCLEHYEFLLDK 55 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHH-------------HCT-----TCHHHHHH-HHSSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHH-------------HcC-----CCHHHHhc-ccCcCHHHHHHHHHHHhCh
Confidence 578999999999999999999998 677 49999999 7789999999999999865
No 38
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.20 E-value=1.8e-11 Score=99.26 Aligned_cols=56 Identities=21% Similarity=0.293 Sum_probs=50.4
Q ss_pred cccCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCCCCChHHHHhHcC--CCCHHHHHHHHHhccCCCC
Q 035712 491 LPNQKKGQWSQEEYQKLFDLVNMDLRMRALEEKKTKHGMLRDNISWEAISDKLA--TRSNAICCMKWYDQLTSPM 563 (563)
Q Consensus 491 ~p~ikkG~WTqEED~kLielV~e~Lr~k~~~e~k~~~G~~~d~IsWs~IS~~Lg--tRS~~QCR~RW~~iL~p~M 563 (563)
.+...+++||++||..|+.+|. .||. .+|..||..|+ +||+.||+.||.++|.|.+
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~-------------~~G~----~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i 62 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVR-------------KYGE----GNWSKILLHYKFNNRTSVMLKDRWRTMKKLKL 62 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHH-------------HHCS----SCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHH-------------HHCC----CcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCC
Confidence 4567899999999999999998 6774 49999999999 9999999999999998864
No 39
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.19 E-value=6e-11 Score=107.18 Aligned_cols=76 Identities=16% Similarity=0.173 Sum_probs=66.7
Q ss_pred CCcCCCCCCHHHHHHHHHHHHHHHHHcCCCccchhhhhcccCCCcccccHHHHHhH----CCCCCHHHHHHHHHHhc---
Q 035712 369 GFVRGKRFSKEEDEMIKRAVMNYIETHGLGEEGLNMVLHCRSHPEVKHCWKEIGSA----LPWRPYDSIYYRAHIIF--- 441 (563)
Q Consensus 369 ~~vKkGkWT~EEDeiL~kaV~ky~~~hGlsee~L~~ll~s~r~~e~k~~Wk~IA~~----LPgRs~kqcy~Rwrr~L--- 441 (563)
...+.++||+|||++|.+.|+.|+ . +.|..|+.. |++|+..+|.+||++++
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G----~------------------g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLG----T------------------GRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHS----S------------------SCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHC----C------------------CChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 345678999999999999999993 2 389999986 48999999999999998
Q ss_pred --CCC-CCCCCCHHH-HHHHHHHHHHhCC
Q 035712 442 --QRD-ENRKWTPEE-LELVRKFHEKHGS 466 (563)
Q Consensus 442 --~p~-kKGkWT~EE-DekLielV~kyGn 466 (563)
+|. ++|.||++| +.+|+.++..||+
T Consensus 85 ~~~p~~kr~~~~p~e~~~~v~~~h~~~g~ 113 (122)
T 2roh_A 85 SIAPQQRRGAPVPQELLDRVLAAQAYWSV 113 (122)
T ss_dssp HSCTTTCCCSSCCHHHHHHHHHHHHHHHS
T ss_pred cCCccccCCCCCCHHHHHHHHHHHHHHhh
Confidence 554 789999999 8999999999997
No 40
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.19 E-value=4.7e-11 Score=101.21 Aligned_cols=66 Identities=20% Similarity=0.430 Sum_probs=55.4
Q ss_pred CCCCHHHHHHHHHHHHHhCC-hhHHHHhh----h-CCChhhHHHHHHHhh-----cccCCCC-CCCHHHHHHHHHHHH
Q 035712 447 RKWTPEELELVRKFHEKHGS-NWKMLANA----L-GKHRFHVKDAWRRVR-----LPNQKKG-QWSQEEYQKLFDLVN 512 (563)
Q Consensus 447 GkWT~EEDekLielV~kyGn-~W~~IAk~----L-GRT~~QCRdRWr~iL-----~p~ikkG-~WTqEED~kLielV~ 512 (563)
++||+|||+.|+++|.+||. +|+.|+.. | |||+.||++||++++ .|.+++| +.+++...+++.|..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a 78 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHA 78 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999 99999996 6 899999999999998 4655666 566666666666653
No 41
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.18 E-value=2.5e-11 Score=97.97 Aligned_cols=53 Identities=28% Similarity=0.400 Sum_probs=47.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCCCCChHHHHhHcC--CCCHHHHHHHHHhccCCCC
Q 035712 494 QKKGQWSQEEYQKLFDLVNMDLRMRALEEKKTKHGMLRDNISWEAISDKLA--TRSNAICCMKWYDQLTSPM 563 (563)
Q Consensus 494 ikkG~WTqEED~kLielV~e~Lr~k~~~e~k~~~G~~~d~IsWs~IS~~Lg--tRS~~QCR~RW~~iL~p~M 563 (563)
.++++||+|||..|+++|. .||. .+|..||..++ +||+.||+.||.+++.+.|
T Consensus 9 ~kk~~WT~eED~~L~~~V~-------------~~G~----~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQ-------------KYGE----GNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHH-------------HHCT----TCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHH-------------ccCC----CchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 5789999999999999998 6774 48999999976 9999999999999998765
No 42
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.16 E-value=3.7e-11 Score=92.73 Aligned_cols=50 Identities=24% Similarity=0.324 Sum_probs=45.2
Q ss_pred CCCCCCHHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCCCCChHHHHhHcC--CCCHHHHHHHHHhccCC
Q 035712 495 KKGQWSQEEYQKLFDLVNMDLRMRALEEKKTKHGMLRDNISWEAISDKLA--TRSNAICCMKWYDQLTS 561 (563)
Q Consensus 495 kkG~WTqEED~kLielV~e~Lr~k~~~e~k~~~G~~~d~IsWs~IS~~Lg--tRS~~QCR~RW~~iL~p 561 (563)
++++||++||..|+.+|. .+|. .+|+.||..|+ +||+.||++||.+++..
T Consensus 1 kr~~WT~eEd~~L~~~v~-------------~~G~----~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVR-------------KYGE----GNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHH-------------HHCT----TCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHH-------------HHCc----CCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 478999999999999998 6774 49999999999 99999999999998753
No 43
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.13 E-value=6e-11 Score=97.08 Aligned_cols=54 Identities=17% Similarity=0.175 Sum_probs=49.2
Q ss_pred hcccCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCCCCChHHHHhHcCCCCHHHHHHHHHhccCC
Q 035712 490 RLPNQKKGQWSQEEYQKLFDLVNMDLRMRALEEKKTKHGMLRDNISWEAISDKLATRSNAICCMKWYDQLTS 561 (563)
Q Consensus 490 L~p~ikkG~WTqEED~kLielV~e~Lr~k~~~e~k~~~G~~~d~IsWs~IS~~LgtRS~~QCR~RW~~iL~p 561 (563)
+.|.+.+++||++||.+|+++|. .+| .+|..||..|++||+.||++||+.+|.+
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~-------------~~G-----~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~ 56 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLA-------------KFG-----RRWTKISKLIGSRTVLQVKSYARQYFKN 56 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHH-------------HTC-----SCHHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred CCCCcCCCCCCHHHHHHHHHHHH-------------HHC-----cCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 35788999999999999999998 788 4999999999999999999999988753
No 44
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.13 E-value=8.4e-11 Score=92.72 Aligned_cols=50 Identities=20% Similarity=0.434 Sum_probs=45.4
Q ss_pred cCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCCCCChHHHHhHcC-CCCHHHHHHHHHhcc
Q 035712 493 NQKKGQWSQEEYQKLFDLVNMDLRMRALEEKKTKHGMLRDNISWEAISDKLA-TRSNAICCMKWYDQL 559 (563)
Q Consensus 493 ~ikkG~WTqEED~kLielV~e~Lr~k~~~e~k~~~G~~~d~IsWs~IS~~Lg-tRS~~QCR~RW~~iL 559 (563)
.+.+++||++||.+|+++|. .+|. .+|..||..|| +||+.||+.||.+++
T Consensus 6 p~~~~~WT~eED~~L~~~v~-------------~~G~----~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 6 SGFDENWGADEELLLIDACE-------------TLGL----GNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CSCCCCCCHHHHHHHHHHHH-------------HTTT----TCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHH-------------HHCc----CCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 46688999999999999998 6774 59999999999 999999999999875
No 45
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.07 E-value=8.6e-11 Score=98.54 Aligned_cols=45 Identities=18% Similarity=0.338 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCChhHHHHhhh-CCChhhHHHHHHHh
Q 035712 445 ENRKWTPEELELVRKFHEKHGSNWKMLANAL-GKHRFHVKDAWRRV 489 (563)
Q Consensus 445 kKGkWT~EEDekLielV~kyGn~W~~IAk~L-GRT~~QCRdRWr~i 489 (563)
.+++||+|||.+|+++|.+||.+|..||.+| +||+.||+.||.++
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 5789999999999999999999999999999 79999999999988
No 46
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.64 E-value=1.5e-11 Score=104.97 Aligned_cols=48 Identities=25% Similarity=0.362 Sum_probs=45.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCChhHHHHhhh-CCChhhHHHHHHHhhc
Q 035712 444 DENRKWTPEELELVRKFHEKHGSNWKMLANAL-GKHRFHVKDAWRRVRL 491 (563)
Q Consensus 444 ~kKGkWT~EEDekLielV~kyGn~W~~IAk~L-GRT~~QCRdRWr~iL~ 491 (563)
...|+||+|||.+|+++|..||++|..||..| |||+.||++||.+++.
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lr 62 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKK 62 (89)
Confidence 37899999999999999999999999999999 8999999999999874
No 47
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=9.7e-11 Score=96.18 Aligned_cols=58 Identities=21% Similarity=0.290 Sum_probs=48.4
Q ss_pred cccCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHhhhcCCCC-CCCChHHHHhHcCCCCHHHHHHHHHhccCC
Q 035712 491 LPNQKKGQWSQEEYQKLFDLVNMDLRMRALEEKKTKHGMLR-DNISWEAISDKLATRSNAICCMKWYDQLTS 561 (563)
Q Consensus 491 ~p~ikkG~WTqEED~kLielV~e~Lr~k~~~e~k~~~G~~~-d~IsWs~IS~~LgtRS~~QCR~RW~~iL~p 561 (563)
.|.+.+++||++||.+|+++|. .||... ...+|..||..|++||..||++||.++|.+
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~-------------~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLI-------------KYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIK 61 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHH-------------HSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHH-------------HhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 3668899999999999999998 676210 015899999999999999999999888765
No 48
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.04 E-value=3.8e-10 Score=99.54 Aligned_cols=64 Identities=23% Similarity=0.446 Sum_probs=56.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-hhHHHHhhh-----CCChhhHHHHHHHhh-----cccCCCCCCCHHHHHH
Q 035712 443 RDENRKWTPEELELVRKFHEKHGS-NWKMLANAL-----GKHRFHVKDAWRRVR-----LPNQKKGQWSQEEYQK 506 (563)
Q Consensus 443 p~kKGkWT~EEDekLielV~kyGn-~W~~IAk~L-----GRT~~QCRdRWr~iL-----~p~ikkG~WTqEED~k 506 (563)
+..+++||+|||+.|+.+|.+||. +|+.|+..+ |||+.+|++||++++ .|.+++|.-++++-..
T Consensus 10 rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~ 84 (105)
T 2aje_A 10 RRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLN 84 (105)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHH
Confidence 347899999999999999999999 999999954 799999999999998 4778889888776544
No 49
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.99 E-value=3.9e-10 Score=93.44 Aligned_cols=48 Identities=13% Similarity=0.286 Sum_probs=44.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC----ChhHHHHhhh-CCChhhHHHHHHHhhc
Q 035712 444 DENRKWTPEELELVRKFHEKHG----SNWKMLANAL-GKHRFHVKDAWRRVRL 491 (563)
Q Consensus 444 ~kKGkWT~EEDekLielV~kyG----n~W~~IAk~L-GRT~~QCRdRWr~iL~ 491 (563)
..+++||+|||.+|+.++..|| ++|..||.+| |||..||++||..++.
T Consensus 16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3678999999999999999999 5999999999 8999999999998874
No 50
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.90 E-value=2e-09 Score=90.28 Aligned_cols=48 Identities=15% Similarity=0.452 Sum_probs=44.4
Q ss_pred cCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCCCCChHHHHhHcCCCCHHHHHHHHHhc
Q 035712 493 NQKKGQWSQEEYQKLFDLVNMDLRMRALEEKKTKHGMLRDNISWEAISDKLATRSNAICCMKWYDQ 558 (563)
Q Consensus 493 ~ikkG~WTqEED~kLielV~e~Lr~k~~~e~k~~~G~~~d~IsWs~IS~~LgtRS~~QCR~RW~~i 558 (563)
...+++||++||.+|+++|. .|| .+|..||..|++||..||+.||.++
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~-------------~~G-----~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALE-------------MYK-----DDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHH-------------HSS-----SCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHH-------------HhC-----CCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 35678999999999999998 787 5999999999999999999999987
No 51
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.42 E-value=1.6e-10 Score=98.55 Aligned_cols=54 Identities=19% Similarity=0.330 Sum_probs=49.1
Q ss_pred hcccCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCCCCChHHHHhHcCCCCHHHHHHHHHhccCC
Q 035712 490 RLPNQKKGQWSQEEYQKLFDLVNMDLRMRALEEKKTKHGMLRDNISWEAISDKLATRSNAICCMKWYDQLTS 561 (563)
Q Consensus 490 L~p~ikkG~WTqEED~kLielV~e~Lr~k~~~e~k~~~G~~~d~IsWs~IS~~LgtRS~~QCR~RW~~iL~p 561 (563)
+.+.+.+|+||++||.+|+++|. .+| .+|+.||..|++||..||++||+.+|..
T Consensus 10 ~~p~~~~~~WT~eEd~~l~~~~~-------------~~G-----~~W~~IA~~l~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 10 GRENLYFQGWTEEEMGTAKKGLL-------------EHG-----RNWSAIARMVGSKTVSQCKNFYFNYKKR 63 (89)
Confidence 45678999999999999999998 788 4899999999999999999999998754
No 52
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.89 E-value=1.7e-09 Score=87.22 Aligned_cols=49 Identities=14% Similarity=0.306 Sum_probs=44.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCChhHHHHh---hh-CCChhhHHHHHHHhhc
Q 035712 443 RDENRKWTPEELELVRKFHEKHGSNWKMLAN---AL-GKHRFHVKDAWRRVRL 491 (563)
Q Consensus 443 p~kKGkWT~EEDekLielV~kyGn~W~~IAk---~L-GRT~~QCRdRWr~iL~ 491 (563)
+..+.+||+|||+.|+++|.+||.+|..|+. +| |||..++++||+++..
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence 3467899999999999999999999999994 66 9999999999999864
No 53
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.79 E-value=9.5e-09 Score=85.13 Aligned_cols=55 Identities=13% Similarity=0.397 Sum_probs=46.1
Q ss_pred CcCCCCCCHHHHHHHHHHHHHHHHHcCCCccchhhhhcccCCCcccccHHHHHhHCCCCCHHHHHHHHHHhcCC
Q 035712 370 FVRGKRFSKEEDEMIKRAVMNYIETHGLGEEGLNMVLHCRSHPEVKHCWKEIGSALPWRPYDSIYYRAHIIFQR 443 (563)
Q Consensus 370 ~vKkGkWT~EEDeiL~kaV~ky~~~hGlsee~L~~ll~s~r~~e~k~~Wk~IA~~LPgRs~kqcy~Rwrr~L~p 443 (563)
....++||++||.+|..+|..|.. .....|..||.+||+||..+|+.||..++..
T Consensus 15 ~~~~~~WT~eEd~~L~~al~~~g~-------------------~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 15 RSAEEPWTQNQQKLLELALQQYPR-------------------GSSDCWDKIARCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHSCS-------------------SSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred ccCCCCCCHHHHHHHHHHHHHcCC-------------------CCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 346679999999999999998831 1124899999999999999999999988763
No 54
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.73 E-value=1.2e-08 Score=88.23 Aligned_cols=46 Identities=20% Similarity=0.375 Sum_probs=42.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----ChhHHHHhhh-CCChhhHHHHHHHhh
Q 035712 445 ENRKWTPEELELVRKFHEKHG----SNWKMLANAL-GKHRFHVKDAWRRVR 490 (563)
Q Consensus 445 kKGkWT~EEDekLielV~kyG----n~W~~IAk~L-GRT~~QCRdRWr~iL 490 (563)
..++||+|||.+|..++..|| +.|..||..| |||..||+.||..++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 568999999999999999996 5899999999 899999999999885
No 55
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.65 E-value=1e-07 Score=80.69 Aligned_cols=68 Identities=18% Similarity=0.205 Sum_probs=56.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCccchhhhhcccCCCcccccHHHHHhH----CCCCCHHHHHHHHHHhc-----CCC
Q 035712 374 KRFSKEEDEMIKRAVMNYIETHGLGEEGLNMVLHCRSHPEVKHCWKEIGSA----LPWRPYDSIYYRAHIIF-----QRD 444 (563)
Q Consensus 374 GkWT~EEDeiL~kaV~ky~~~hGlsee~L~~ll~s~r~~e~k~~Wk~IA~~----LPgRs~kqcy~Rwrr~L-----~p~ 444 (563)
++||+|||++|...|..|+ . +.|..|+.. ||+||..+|.+||++++ .|.
T Consensus 1 r~WT~eEd~~L~~gv~k~G----~------------------g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~ 58 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLG----T------------------GRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQ 58 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHC----S------------------SCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGG
T ss_pred CCCCHHHHHHHHHHHHHHC----C------------------CCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcc
Confidence 4799999999999999993 2 389999986 99999999999999988 443
Q ss_pred --CCCCCCHHHHHHHHHHHHH
Q 035712 445 --ENRKWTPEELELVRKFHEK 463 (563)
Q Consensus 445 --kKGkWT~EEDekLielV~k 463 (563)
...+.+++...+++.++..
T Consensus 59 ~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 59 QRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp GCCSSCCCHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHH
Confidence 4557777887888888764
No 56
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.62 E-value=6.6e-08 Score=85.32 Aligned_cols=75 Identities=19% Similarity=0.170 Sum_probs=62.3
Q ss_pred CcCCCCCCHHHHHHHHHHHHHHHHHcCCCccchhhhhcccCCCcccccHHHHHhHC----CCCCHHHHHHHHHHhc----
Q 035712 370 FVRGKRFSKEEDEMIKRAVMNYIETHGLGEEGLNMVLHCRSHPEVKHCWKEIGSAL----PWRPYDSIYYRAHIIF---- 441 (563)
Q Consensus 370 ~vKkGkWT~EEDeiL~kaV~ky~~~hGlsee~L~~ll~s~r~~e~k~~Wk~IA~~L----PgRs~kqcy~Rwrr~L---- 441 (563)
..+.++||+|||++|...|..|+ . +.|..|+..+ |+||..+|.+||++++
T Consensus 10 rr~r~~WT~EEd~~L~~gV~k~G----~------------------g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~ 67 (105)
T 2aje_A 10 RRIRRPFSVAEVEALVQAVEKLG----T------------------GRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAK 67 (105)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHHC----S------------------SSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhC----C------------------CChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 45678999999999999999993 2 3899999865 8999999999999988
Q ss_pred -CCC-CCCCCCHHHHHH-HHHHHHHhCC
Q 035712 442 -QRD-ENRKWTPEELEL-VRKFHEKHGS 466 (563)
Q Consensus 442 -~p~-kKGkWT~EEDek-LielV~kyGn 466 (563)
.|. .+|.-+|.|--. +++|+..+|+
T Consensus 68 ~~p~~~rg~~~P~~~l~rv~~~~~~~~~ 95 (105)
T 2aje_A 68 ISPQQRRGEPVPQELLNRVLNAHGYWTQ 95 (105)
T ss_dssp CCTTTTTCCSCCCHHHHHHHHHHHHHHH
T ss_pred CCcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 343 678888887765 8888887764
No 57
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=6.6e-08 Score=76.91 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCChhHHHHhhh-CCChhhHHHHHHHhh
Q 035712 445 ENRKWTPEELELVRKFHEKHGSNWKMLANAL-GKHRFHVKDAWRRVR 490 (563)
Q Consensus 445 kKGkWT~EEDekLielV~kyGn~W~~IAk~L-GRT~~QCRdRWr~iL 490 (563)
..++||+||+.++.+++..||.+|..||.+| +||..||..+|+...
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 5689999999999999999999999999999 899999999998764
No 58
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.54 E-value=8e-08 Score=83.03 Aligned_cols=51 Identities=10% Similarity=0.116 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCCCCChHHHHhHcCCCCHHHHHHHHHhcc
Q 035712 495 KKGQWSQEEYQKLFDLVNMDLRMRALEEKKTKHGMLRDNISWEAISDKLATRSNAICCMKWYDQL 559 (563)
Q Consensus 495 kkG~WTqEED~kLielV~e~Lr~k~~~e~k~~~G~~~d~IsWs~IS~~LgtRS~~QCR~RW~~iL 559 (563)
..++||.+||.+|+.++. .+|.. ...+|..||..||+||..||+.||..++
T Consensus 7 ~~~~WT~eEd~~L~~al~-------------~~~~~-~~~rW~~IA~~vpGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALA-------------VYDKD-TPDRWANVARAVEGRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHH-------------HSCTT-CTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH-------------HcCCC-CCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 567999999999999998 55521 2368999999999999999999999875
No 59
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.43 E-value=3.1e-07 Score=75.87 Aligned_cols=47 Identities=21% Similarity=0.417 Sum_probs=43.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----ChhHHHHhhhCCChhhHHHHHHHhhc
Q 035712 445 ENRKWTPEELELVRKFHEKHG----SNWKMLANALGKHRFHVKDAWRRVRL 491 (563)
Q Consensus 445 kKGkWT~EEDekLielV~kyG----n~W~~IAk~LGRT~~QCRdRWr~iL~ 491 (563)
..+.||.||+.+|..++..|+ ..|..||.+||||..||+.||..+..
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lgRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELGRSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 578999999999999999997 48999999999999999999998864
No 60
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=2.1e-06 Score=68.22 Aligned_cols=49 Identities=20% Similarity=0.304 Sum_probs=44.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCCCCChHHHHhHcCCCCHHHHHHHHHhccC
Q 035712 494 QKKGQWSQEEYQKLFDLVNMDLRMRALEEKKTKHGMLRDNISWEAISDKLATRSNAICCMKWYDQLT 560 (563)
Q Consensus 494 ikkG~WTqEED~kLielV~e~Lr~k~~~e~k~~~G~~~d~IsWs~IS~~LgtRS~~QCR~RW~~iL~ 560 (563)
...++||++|+.+|++++. .|| -+|..||..||+||..||..+|+....
T Consensus 10 ~~~~~WT~eE~~~F~~~~~-------------~~g-----k~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKFI-------------QHP-----KNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp SCCCSCCHHHHHHHHHHHH-------------HST-----TCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred ccCCCCCHHHHHHHHHHHH-------------HhC-----CCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 3567999999999999998 788 599999999999999999999997654
No 61
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.23 E-value=1.8e-06 Score=69.61 Aligned_cols=51 Identities=20% Similarity=0.129 Sum_probs=44.2
Q ss_pred CcCCCCCCHHHHHHHHHHHHHHHHHcCCCccchhhhhcccCCCcccccHHHHHh---HCCCCCHHHHHHHHHHhcCC
Q 035712 370 FVRGKRFSKEEDEMIKRAVMNYIETHGLGEEGLNMVLHCRSHPEVKHCWKEIGS---ALPWRPYDSIYYRAHIIFQR 443 (563)
Q Consensus 370 ~vKkGkWT~EEDeiL~kaV~ky~~~hGlsee~L~~ll~s~r~~e~k~~Wk~IA~---~LPgRs~kqcy~Rwrr~L~p 443 (563)
...+++||+||++.|++.|.+|+. .|..|+. .|++|+..++.+||+++...
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~-----------------------~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGN-----------------------HWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCS-----------------------CHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhH-----------------------hHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 335679999999999999999953 8999994 67899999999999998754
No 62
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.20 E-value=1.3e-06 Score=86.17 Aligned_cols=46 Identities=26% Similarity=0.434 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCChhHHHHhhh-CCChhhHHHHHHHhh
Q 035712 445 ENRKWTPEELELVRKFHEKHGSNWKMLANAL-GKHRFHVKDAWRRVR 490 (563)
Q Consensus 445 kKGkWT~EEDekLielV~kyGn~W~~IAk~L-GRT~~QCRdRWr~iL 490 (563)
..++||+||+..+++++.+||.+|..||+.| +||..||+++|+++.
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~k 178 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYR 178 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 5789999999999999999999999999999 799999999999885
No 63
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.11 E-value=7.9e-06 Score=67.86 Aligned_cols=53 Identities=13% Similarity=0.131 Sum_probs=44.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHcCCCccchhhhhcccCCCcccccHHHHHhHCCCCCHHHHHHHHHHhcC
Q 035712 371 VRGKRFSKEEDEMIKRAVMNYIETHGLGEEGLNMVLHCRSHPEVKHCWKEIGSALPWRPYDSIYYRAHIIFQ 442 (563)
Q Consensus 371 vKkGkWT~EEDeiL~kaV~ky~~~hGlsee~L~~ll~s~r~~e~k~~Wk~IA~~LPgRs~kqcy~Rwrr~L~ 442 (563)
.....||.+|+.+|.+|+..|-. ....+|..||..+|+|+..+|..||..++.
T Consensus 6 ~~~~~WT~eE~k~fe~ALa~~~~-------------------~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 6 SGDKEWNEKELQKLHCAFASLPK-------------------HKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp CSSSCCCHHHHHHHHHHHHHSCS-------------------SSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCCCCCHHHHHHHHHHHHHCCC-------------------CCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 34468999999999999888821 123589999999999999999999998875
No 64
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.10 E-value=4.6e-06 Score=72.18 Aligned_cols=56 Identities=7% Similarity=0.190 Sum_probs=50.5
Q ss_pred HHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhCChhHHHHhhh------CCChhhHHHHHHHhhc
Q 035712 433 IYYRAHIIFQRDENRKWTPEELELVRKFHEKHGSNWKMLANAL------GKHRFHVKDAWRRVRL 491 (563)
Q Consensus 433 cy~Rwrr~L~p~kKGkWT~EEDekLielV~kyGn~W~~IAk~L------GRT~~QCRdRWr~iL~ 491 (563)
+-.+|..+|.+ .+||.||+..|++|+.+||..|..|+..+ +||..++++||..+..
T Consensus 20 t~eeY~~~L~~---~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 20 SEQEYQLYLHD---DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp CHHHHHHHTCB---TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCC---CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 34678888876 89999999999999999999999999998 5999999999998853
No 65
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.06 E-value=3.1e-06 Score=91.39 Aligned_cols=45 Identities=22% Similarity=0.330 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCCCCChHHHHhHcCCCCHHHHHHHHHhc
Q 035712 496 KGQWSQEEYQKLFDLVNMDLRMRALEEKKTKHGMLRDNISWEAISDKLATRSNAICCMKWYDQ 558 (563)
Q Consensus 496 kG~WTqEED~kLielV~e~Lr~k~~~e~k~~~G~~~d~IsWs~IS~~LgtRS~~QCR~RW~~i 558 (563)
...||.+|-.+++++|. .|| .+|..||..++|||..||++.|+..
T Consensus 380 ~~~WT~eE~~~f~~al~-------------~yG-----kdw~~IA~~VgTKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 380 NARWTTEEQLLAVQAIR-------------KYG-----RDFQAISDVIGNKSVVQVKNFFVNY 424 (482)
T ss_dssp CSCCCHHHHHHHHHHHH-------------HHT-----TCHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHH-------------HHC-----cCHHHHHHHhCCCCHHHHHHHHHHH
Confidence 56899999999999998 788 5999999999999999999999764
No 66
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=97.94 E-value=1.2e-05 Score=63.84 Aligned_cols=46 Identities=15% Similarity=0.280 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CC-hhHHHHh-hh-CCChhhHHHHHHHhhc
Q 035712 446 NRKWTPEELELVRKFHEKH--------GS-NWKMLAN-AL-GKHRFHVKDAWRRVRL 491 (563)
Q Consensus 446 KGkWT~EEDekLielV~ky--------Gn-~W~~IAk-~L-GRT~~QCRdRWr~iL~ 491 (563)
+.+||+|||.+|+.+|..| |+ -|..+++ .+ ++|..+|++||...|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 4689999999999999999 66 8999999 67 8999999999998873
No 67
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.86 E-value=1.9e-05 Score=65.09 Aligned_cols=52 Identities=21% Similarity=0.236 Sum_probs=43.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCCCCChHHHHhHcCCCCHHHHHHHHHhccC
Q 035712 494 QKKGQWSQEEYQKLFDLVNMDLRMRALEEKKTKHGMLRDNISWEAISDKLATRSNAICCMKWYDQLT 560 (563)
Q Consensus 494 ikkG~WTqEED~kLielV~e~Lr~k~~~e~k~~~G~~~d~IsWs~IS~~LgtRS~~QCR~RW~~iL~ 560 (563)
...+.||.+|+.+|..+|. .++. ...-+|..||..| +||..||+.||..++.
T Consensus 6 ~~~~~WT~eE~k~fe~al~-------------~~p~-~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 6 SGAPEWTEEDLSQLTRSMV-------------KFPG-GTPGRWEKIAHEL-GRSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHH-------------HSCT-TCTTHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHH-------------HCCC-CCCcHHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 4678999999999999998 5542 1236899999999 7999999999987653
No 68
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.83 E-value=3.4e-05 Score=64.02 Aligned_cols=47 Identities=13% Similarity=0.256 Sum_probs=42.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC----hhHHHHhhh-CCChhhHHHHHHHhhc
Q 035712 445 ENRKWTPEELELVRKFHEKHGS----NWKMLANAL-GKHRFHVKDAWRRVRL 491 (563)
Q Consensus 445 kKGkWT~EEDekLielV~kyGn----~W~~IAk~L-GRT~~QCRdRWr~iL~ 491 (563)
....||.+|+.+|..+...|+. .|..||.+| |||..+|+.||..++.
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 4578999999999999999975 799999999 7999999999998864
No 69
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=97.81 E-value=2.1e-05 Score=77.65 Aligned_cols=50 Identities=20% Similarity=0.271 Sum_probs=44.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCCCCChHHHHhHcCCCCHHHHHHHHHhccCC
Q 035712 494 QKKGQWSQEEYQKLFDLVNMDLRMRALEEKKTKHGMLRDNISWEAISDKLATRSNAICCMKWYDQLTS 561 (563)
Q Consensus 494 ikkG~WTqEED~kLielV~e~Lr~k~~~e~k~~~G~~~d~IsWs~IS~~LgtRS~~QCR~RW~~iL~p 561 (563)
...++||.+|...|++++. .|| .+|..||..|+|||..||+++|+....+
T Consensus 131 k~s~~WTeEE~~lFleAl~-------------kYG-----KDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIR-------------KYG-----RDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHH-------------HHS-----SCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred ccCCCCCHHHHHHHHHHHH-------------HHC-----cCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3467999999999999998 788 6899999999999999999999987653
No 70
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=97.66 E-value=3e-05 Score=61.59 Aligned_cols=55 Identities=16% Similarity=0.175 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCccchhhhhcccCCCcccccHHHHHh-HCCCCCHHHHHHHHHHhcC
Q 035712 374 KRFSKEEDEMIKRAVMNYIETHGLGEEGLNMVLHCRSHPEVKHCWKEIGS-ALPWRPYDSIYYRAHIIFQ 442 (563)
Q Consensus 374 GkWT~EEDeiL~kaV~ky~~~hGlsee~L~~ll~s~r~~e~k~~Wk~IA~-~LPgRs~kqcy~Rwrr~L~ 442 (563)
.+||+|||++|...|..|.. .|. .......|+.||. .+|++|..||+.||.+.|.
T Consensus 3 ~~FT~edD~~L~~~v~~~~~-~~~-------------~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 3 IAFTDADDVAILTYVKENAR-SPS-------------SVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCHHHHHHHHHHHHHTCC-STT-------------TTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHhcc-ccC-------------CCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 47999999999999988832 000 1112359999999 8999999999999998763
No 71
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.55 E-value=0.00013 Score=63.24 Aligned_cols=57 Identities=19% Similarity=0.352 Sum_probs=50.2
Q ss_pred hHHHHHHHhhcccCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCCCCChHHHHhHc-----CCCCHHHHHHHH
Q 035712 481 HVKDAWRRVRLPNQKKGQWSQEEYQKLFDLVNMDLRMRALEEKKTKHGMLRDNISWEAISDKL-----ATRSNAICCMKW 555 (563)
Q Consensus 481 QCRdRWr~iL~p~ikkG~WTqEED~kLielV~e~Lr~k~~~e~k~~~G~~~d~IsWs~IS~~L-----gtRS~~QCR~RW 555 (563)
=+.++|..+|.+ ++||.||+..|++++. .++ ..|..|+..+ ++||....++||
T Consensus 19 yt~eeY~~~L~~----~~WTkEETd~Lf~L~~-------------~fd-----lRW~vI~DRy~~~~~~~Rt~EdLK~Ry 76 (93)
T 3hm5_A 19 YSEQEYQLYLHD----DAWTKAETDHLFDLSR-------------RFD-----LRFVVIHDRYDHQQFKKRSVEDLKERY 76 (93)
T ss_dssp CCHHHHHHHTCB----TTBCHHHHHHHHHHHH-------------HTT-----TCHHHHHHHSCTTTSCCCCHHHHHHHH
T ss_pred cCHHHHHHHcCC----CCCCHHHHHHHHHHHH-------------HhC-----CCeeeehhhhccCCCCCCCHHHHHHHH
Confidence 356788888854 8999999999999998 677 6999999999 479999999999
Q ss_pred Hhcc
Q 035712 556 YDQL 559 (563)
Q Consensus 556 ~~iL 559 (563)
+.+.
T Consensus 77 Y~v~ 80 (93)
T 3hm5_A 77 YHIC 80 (93)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9864
No 72
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.58 E-value=1.8e-05 Score=64.87 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---hhHHHHhhhCCChhhHHHHHHHhh
Q 035712 446 NRKWTPEELELVRKFHEKHGS---NWKMLANALGKHRFHVKDAWRRVR 490 (563)
Q Consensus 446 KGkWT~EEDekLielV~kyGn---~W~~IAk~LGRT~~QCRdRWr~iL 490 (563)
--.||.|||..|+..+.+-|. .|+.||..||||+.||.+||+.++
T Consensus 14 vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~Lnks~~QV~~RF~~Lm 61 (70)
T 2lr8_A 14 IILWTRNDDRVILLECQKRGPSSKTFAYLAAKLDKNPNQVSERFQQLM 61 (70)
Confidence 348999999999999999999 999999999999999999999886
No 73
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.39 E-value=0.0002 Score=61.76 Aligned_cols=44 Identities=18% Similarity=0.424 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHHHHHhCC---hhHHHHhhh-CCChhhHHHHHHHhh
Q 035712 447 RKWTPEELELVRKFHEKHGS---NWKMLANAL-GKHRFHVKDAWRRVR 490 (563)
Q Consensus 447 GkWT~EEDekLielV~kyGn---~W~~IAk~L-GRT~~QCRdRWr~iL 490 (563)
--||.|||..|+..+.+-|. .|..||..| +|++.||.+||+.++
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm 81 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELM 81 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 47999999999999999998 999999999 699999999999875
No 74
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.19 E-value=0.00066 Score=54.26 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=41.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCChhHHHHh-hh-CCChhhHHHHHHHhh
Q 035712 444 DENRKWTPEELELVRKFHEKHGSNWKMLAN-AL-GKHRFHVKDAWRRVR 490 (563)
Q Consensus 444 ~kKGkWT~EEDekLielV~kyGn~W~~IAk-~L-GRT~~QCRdRWr~iL 490 (563)
.....||+||-.+..+.+.+||.+|..|+. +| .||..||...|+.-.
T Consensus 7 ~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wK 55 (63)
T 2yqk_A 7 GIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYWK 55 (63)
T ss_dssp CCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhccc
Confidence 356799999999999999999999999999 57 799999998887554
No 75
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.17 E-value=0.0014 Score=67.26 Aligned_cols=99 Identities=18% Similarity=0.216 Sum_probs=75.6
Q ss_pred CCCCHHHHHHHHHHHHHhCC-hhHHHHhhh-CCChhhHHHHHHHhhc---------------------------------
Q 035712 447 RKWTPEELELVRKFHEKHGS-NWKMLANAL-GKHRFHVKDAWRRVRL--------------------------------- 491 (563)
Q Consensus 447 GkWT~EEDekLielV~kyGn-~W~~IAk~L-GRT~~QCRdRWr~iL~--------------------------------- 491 (563)
+.||..+...++.++.+||. +|..||..| |.|...|+..+.-+..
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l~ 190 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKALD 190 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999 999999999 8999988643322211
Q ss_pred -----------------ccCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCCCCChHHHHh------------H
Q 035712 492 -----------------PNQKKGQWSQEEYQKLFDLVNMDLRMRALEEKKTKHGMLRDNISWEAISD------------K 542 (563)
Q Consensus 492 -----------------p~ikkG~WTqEED~kLielV~e~Lr~k~~~e~k~~~G~~~d~IsWs~IS~------------~ 542 (563)
+..+.-.||++||..|+-.+. .+|. .....|..|.. .
T Consensus 191 ~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~-------------k~G~-~~~g~we~Ir~~Ir~~p~FrFDwf 256 (304)
T 1ofc_X 191 QKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLH-------------KLGF-DKENVYEELRAAIRASPQFRFDWF 256 (304)
T ss_dssp HHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHH-------------HHCT-TSTTHHHHHHHHHHHCGGGTTCHH
T ss_pred HHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHH-------------HhcC-CCcchHHHHHHHHHhCcchhhhHH
Confidence 011234799999999999998 6773 23368999973 3
Q ss_pred cCCCCHHHHHHHHHhcc
Q 035712 543 LATRSNAICCMKWYDQL 559 (563)
Q Consensus 543 LgtRS~~QCR~RW~~iL 559 (563)
+-+||+.++..|=..+|
T Consensus 257 ~kSRTp~el~rRc~tLi 273 (304)
T 1ofc_X 257 IKSRTALELQRRCNTLI 273 (304)
T ss_dssp HHTCCHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHH
Confidence 45799999888866554
No 76
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.11 E-value=4.9e-05 Score=63.23 Aligned_cols=47 Identities=13% Similarity=0.183 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCccchhhhhcccCCCcccccHHHHHhHCCCCCHHHHHHHHH
Q 035712 373 GKRFSKEEDEMIKRAVMNYIETHGLGEEGLNMVLHCRSHPEVKHCWKEIGSALPWRPYDSIYYRAH 438 (563)
Q Consensus 373 kGkWT~EEDeiL~kaV~ky~~~hGlsee~L~~ll~s~r~~e~k~~Wk~IA~~LPgRs~kqcy~Rwr 438 (563)
...||.+|+.+|.+|+..|- ......|..||..+|+|+..+|..+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp-------------------~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTN-------------------KDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSC-------------------SSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCC-------------------CCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 35799999999999988772 122458999999999999999998885
No 77
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.10 E-value=0.00048 Score=74.55 Aligned_cols=46 Identities=26% Similarity=0.434 Sum_probs=42.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCChhHHHHhhh-CCChhhHHHHHHHhh
Q 035712 445 ENRKWTPEELELVRKFHEKHGSNWKMLANAL-GKHRFHVKDAWRRVR 490 (563)
Q Consensus 445 kKGkWT~EEDekLielV~kyGn~W~~IAk~L-GRT~~QCRdRWr~iL 490 (563)
...+||.||-.++++++.+||.+|..||..| .||..||+.+|.++.
T Consensus 379 ~~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4679999999999999999999999999999 599999999998653
No 78
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.02 E-value=0.00049 Score=57.55 Aligned_cols=46 Identities=17% Similarity=0.458 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHHHHHHhC----------ChhHHHHhhh---C--CChhhHHHHHHHhhc
Q 035712 446 NRKWTPEELELVRKFHEKHG----------SNWKMLANAL---G--KHRFHVKDAWRRVRL 491 (563)
Q Consensus 446 KGkWT~EEDekLielV~kyG----------n~W~~IAk~L---G--RT~~QCRdRWr~iL~ 491 (563)
...||.+|...|+.++..+- ..|..||..| | ||+.||+++|.++..
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k 64 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLK 64 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 47899999999999997531 1799999998 3 999999999999963
No 79
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.87 E-value=0.0014 Score=53.50 Aligned_cols=46 Identities=17% Similarity=0.232 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCChhHHHHh-hh-CCChhhHHHHHHHhh
Q 035712 445 ENRKWTPEELELVRKFHEKHGSNWKMLAN-AL-GKHRFHVKDAWRRVR 490 (563)
Q Consensus 445 kKGkWT~EEDekLielV~kyGn~W~~IAk-~L-GRT~~QCRdRWr~iL 490 (563)
....||+||-.+..+.+..||.+|..|+. +| +||..+|...|+.-.
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wK 54 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWK 54 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 45799999999999999999999999999 57 799999999887543
No 80
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=96.84 E-value=0.0002 Score=59.55 Aligned_cols=43 Identities=21% Similarity=0.308 Sum_probs=37.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC----hhHHHHhhh-CCChhhHHHHHH
Q 035712 445 ENRKWTPEELELVRKFHEKHGS----NWKMLANAL-GKHRFHVKDAWR 487 (563)
Q Consensus 445 kKGkWT~EEDekLielV~kyGn----~W~~IAk~L-GRT~~QCRdRWr 487 (563)
....||.+|+.+|..+...|+. .|..||..| |||..+|+.+|.
T Consensus 19 ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 19 SGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp ---CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 4568999999999999999976 799999999 899999999885
No 81
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.83 E-value=0.0084 Score=61.60 Aligned_cols=96 Identities=10% Similarity=0.123 Sum_probs=71.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCccchhhhhcccCCCcccccHHHHHhHCCCCCHHHHHHHHH----Hh---------
Q 035712 374 KRFSKEEDEMIKRAVMNYIETHGLGEEGLNMVLHCRSHPEVKHCWKEIGSALPWRPYDSIYYRAH----II--------- 440 (563)
Q Consensus 374 GkWT~EEDeiL~kaV~ky~~~hGlsee~L~~ll~s~r~~e~k~~Wk~IA~~LPgRs~kqcy~Rwr----r~--------- 440 (563)
+.||..+...+..+...|+. .+|..||..+++.+...|..++. ++
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr----------------------~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~ 168 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGR----------------------DDIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERI 168 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCT----------------------TCHHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHH
T ss_pred cccCHHHHHHHHHHHHHhCH----------------------HHHHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHH
Confidence 46999999999999888842 36777777777777666643221 10
Q ss_pred ------------------------------------c--CCCCCCCCCHHHHHHHHHHHHHhCC----hhHHHHhh----
Q 035712 441 ------------------------------------F--QRDENRKWTPEELELVRKFHEKHGS----NWKMLANA---- 474 (563)
Q Consensus 441 ------------------------------------L--~p~kKGkWT~EEDekLielV~kyGn----~W~~IAk~---- 474 (563)
+ .+++...||.+||..|+-++.+||- .|..|...
T Consensus 169 ~~~IE~gE~ki~r~~~~~~~l~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~ 248 (304)
T 1ofc_X 169 MGQIERGEGKIQRRLSIKKALDQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRAS 248 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhC
Confidence 0 1234568999999999999999997 89999743
Q ss_pred --------h-CCChhhHHHHHHHhhc
Q 035712 475 --------L-GKHRFHVKDAWRRVRL 491 (563)
Q Consensus 475 --------L-GRT~~QCRdRWr~iL~ 491 (563)
| .||+.+|..|...++.
T Consensus 249 p~FrFDwf~kSRTp~el~rRc~tLi~ 274 (304)
T 1ofc_X 249 PQFRFDWFIKSRTALELQRRCNTLIT 274 (304)
T ss_dssp GGGTTCHHHHTCCHHHHHHHHHHHHH
T ss_pred cchhhhHHHhcCCHHHHHHHHHHHHH
Confidence 3 5999999999877763
No 82
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.82 E-value=0.0014 Score=56.43 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=40.7
Q ss_pred CCCCHHHHHHHHHHHHHhCChhHHHHhhh-CCChhhHHHHHHHhh
Q 035712 447 RKWTPEELELVRKFHEKHGSNWKMLANAL-GKHRFHVKDAWRRVR 490 (563)
Q Consensus 447 GkWT~EEDekLielV~kyGn~W~~IAk~L-GRT~~QCRdRWr~iL 490 (563)
..||+||..+..+....||.+|..||..| +||..+|...|+...
T Consensus 44 ~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~K 88 (94)
T 4a69_C 44 NMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTK 88 (94)
T ss_dssp CCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhccc
Confidence 68999999999999999999999999999 799999999887553
No 83
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.78 E-value=0.00095 Score=55.77 Aligned_cols=57 Identities=26% Similarity=0.489 Sum_probs=42.8
Q ss_pred CCCCCCHHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCCCCChHHHHhHcC----CCCHHHHHHHHHhcc
Q 035712 495 KKGQWSQEEYQKLFDLVNMDLRMRALEEKKTKHGMLRDNISWEAISDKLA----TRSNAICCMKWYDQL 559 (563)
Q Consensus 495 kkG~WTqEED~kLielV~e~Lr~k~~~e~k~~~G~~~d~IsWs~IS~~Lg----tRS~~QCR~RW~~iL 559 (563)
+...||.+|...||.+..++-.. ... +. ....-|..||..|. .||+.||+.+|.++.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~--f~~-----~~-~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGL--FNT-----SK-SNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHH--HHH-----SS-CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH--HHc-----cc-cchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999853211 111 11 23458999999994 799999999999864
No 84
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.55 E-value=0.0048 Score=49.24 Aligned_cols=48 Identities=13% Similarity=0.263 Sum_probs=42.4
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCCCCChHHHHh-HcCCCCHHHHHHHHHh
Q 035712 492 PNQKKGQWSQEEYQKLFDLVNMDLRMRALEEKKTKHGMLRDNISWEAISD-KLATRSNAICCMKWYD 557 (563)
Q Consensus 492 p~ikkG~WTqEED~kLielV~e~Lr~k~~~e~k~~~G~~~d~IsWs~IS~-~LgtRS~~QCR~RW~~ 557 (563)
|......||++|-.++.+++. .|| -+|..|+. .|++||..||-.-||.
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~-------------~yG-----Kdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLR-------------QYG-----KNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHH-------------HTC-----SCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHH-------------HhC-----ccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 456678999999999999998 788 58999999 5899999999988875
No 85
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=96.31 E-value=0.0064 Score=52.64 Aligned_cols=45 Identities=9% Similarity=0.249 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHHHHHhCChhHHHHhhh------CCChhhHHHHHHHhhc
Q 035712 447 RKWTPEELELVRKFHEKHGSNWKMLANAL------GKHRFHVKDAWRRVRL 491 (563)
Q Consensus 447 GkWT~EEDekLielV~kyGn~W~~IAk~L------GRT~~QCRdRWr~iL~ 491 (563)
..||.||...|++|+..|+-.|..|+..+ +||-.++++||..+..
T Consensus 31 ~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~ 81 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999999999986 3899999999998853
No 86
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.15 E-value=0.0078 Score=51.96 Aligned_cols=47 Identities=13% Similarity=0.409 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCCCCChHHHHhHcCCCCHHHHHHHHHhcc
Q 035712 498 QWSQEEYQKLFDLVNMDLRMRALEEKKTKHGMLRDNISWEAISDKLATRSNAICCMKWYDQL 559 (563)
Q Consensus 498 ~WTqEED~kLielV~e~Lr~k~~~e~k~~~G~~~d~IsWs~IS~~LgtRS~~QCR~RW~~iL 559 (563)
.||.++|+.|+...+ ..|. ..-.|+.||..|++|++.|+.+||++++
T Consensus 35 lWTRe~DR~IL~~cQ-------------~~G~--s~~tFa~iA~~L~Nks~nqV~~RFq~Lm 81 (95)
T 1ug2_A 35 LWTREADRVILTMCQ-------------EQGA--QPHTFSVISQQLGNKTPVEVSHRFRELM 81 (95)
T ss_dssp SSCHHHHHHHHHHHH-------------HTTS--CTTTHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHH-------------hcCC--ChhHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 699999999999998 4442 2248999999999999999999999876
No 87
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=95.51 E-value=0.022 Score=48.89 Aligned_cols=46 Identities=20% Similarity=0.370 Sum_probs=40.8
Q ss_pred CCCCCCHHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCCCCChHHHHhHcCCCCHHHHHHHHHhc
Q 035712 495 KKGQWSQEEYQKLFDLVNMDLRMRALEEKKTKHGMLRDNISWEAISDKLATRSNAICCMKWYDQ 558 (563)
Q Consensus 495 kkG~WTqEED~kLielV~e~Lr~k~~~e~k~~~G~~~d~IsWs~IS~~LgtRS~~QCR~RW~~i 558 (563)
....||++|-.++.+++. .|| -+|..|+..||+||..+|-..||..
T Consensus 42 ~~~~WT~eE~~~F~~~~~-------------~~g-----K~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 42 VMNMWSEQEKETFREKFM-------------QHP-----KNFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp HTCCCCHHHHHHHHHHHH-------------HST-----TCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH-------------HcC-----CCHHHHHHHcCCCCHHHHHHHHhcc
Confidence 356799999999999998 788 5999999999999999999988753
No 88
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=95.48 E-value=0.025 Score=46.06 Aligned_cols=45 Identities=20% Similarity=0.222 Sum_probs=40.2
Q ss_pred CCCCCCHHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCCCCChHHHHh-HcCCCCHHHHHHHHHh
Q 035712 495 KKGQWSQEEYQKLFDLVNMDLRMRALEEKKTKHGMLRDNISWEAISD-KLATRSNAICCMKWYD 557 (563)
Q Consensus 495 kkG~WTqEED~kLielV~e~Lr~k~~~e~k~~~G~~~d~IsWs~IS~-~LgtRS~~QCR~RW~~ 557 (563)
....||++|-.++.+++. .|| -+|..|+. .||+||..+|-.-|+.
T Consensus 7 ~~~~WT~eE~~~Fe~~l~-------------~yG-----Kdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALE-------------KYG-----KDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHH-------------HTC-----SCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH-------------HhC-----ccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 456899999999999998 788 48999999 5999999999998874
No 89
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=94.87 E-value=0.067 Score=46.30 Aligned_cols=45 Identities=24% Similarity=0.472 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCCCCChHHHHhHcC-----CCCHHHHHHHHHhcc
Q 035712 497 GQWSQEEYQKLFDLVNMDLRMRALEEKKTKHGMLRDNISWEAISDKLA-----TRSNAICCMKWYDQL 559 (563)
Q Consensus 497 G~WTqEED~kLielV~e~Lr~k~~~e~k~~~G~~~d~IsWs~IS~~Lg-----tRS~~QCR~RW~~iL 559 (563)
..||.+|...|+++++ .+. .+|..|+..+. .||-.+.+.||+.+.
T Consensus 31 ~~WT~eETd~LfdLc~-------------~fd-----lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 31 DAWTKAETDHLFDLSR-------------RFD-----LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TTBCHHHHHHHHHHHH-------------HTT-----TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-------------HcC-----CCeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 5799999999999998 566 79999999984 799999999999864
No 90
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.30 E-value=0.14 Score=48.53 Aligned_cols=41 Identities=17% Similarity=0.239 Sum_probs=33.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---hhHHHHhh--h-CCChhhHHHH
Q 035712 445 ENRKWTPEELELVRKFHEKHGS---NWKMLANA--L-GKHRFHVKDA 485 (563)
Q Consensus 445 kKGkWT~EEDekLielV~kyGn---~W~~IAk~--L-GRT~~QCRdR 485 (563)
.-..||..|-..|+..+.+||. .|..|+.. | ++|...+..-
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y 52 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRL 52 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHH
Confidence 4568999999999999999994 79999875 4 7887777653
No 91
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=93.28 E-value=0.008 Score=49.36 Aligned_cols=47 Identities=11% Similarity=0.276 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCCCCChHHHHhHcCCCCHHHHHHHHHhccC
Q 035712 498 QWSQEEYQKLFDLVNMDLRMRALEEKKTKHGMLRDNISWEAISDKLATRSNAICCMKWYDQLT 560 (563)
Q Consensus 498 ~WTqEED~kLielV~e~Lr~k~~~e~k~~~G~~~d~IsWs~IS~~LgtRS~~QCR~RW~~iL~ 560 (563)
.||.+||+.|+...+ ..|.. .--|+.||..| +||+.|+.+||.+++.
T Consensus 16 lWTReeDR~IL~~cq-------------~~G~s--~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQ-------------KRGPS--SKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 699999999999998 34421 24799999999 8999999999988763
No 92
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=94.20 E-value=0.24 Score=52.21 Aligned_cols=98 Identities=21% Similarity=0.317 Sum_probs=74.0
Q ss_pred CCCCHHHHHHHHHHHHHhCC-hhHHHHhhh--CCChhhHHHHHHHhhc--------------------------------
Q 035712 447 RKWTPEELELVRKFHEKHGS-NWKMLANAL--GKHRFHVKDAWRRVRL-------------------------------- 491 (563)
Q Consensus 447 GkWT~EEDekLielV~kyGn-~W~~IAk~L--GRT~~QCRdRWr~iL~-------------------------------- 491 (563)
+.||.-+=..++.++.+||. +-..||..| |.|...|+ +|..++.
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~ 202 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA 202 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999 799999999 58988888 4444432
Q ss_pred -------------------ccC--CCCCCCHHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCCCCChHHHHhHc-------
Q 035712 492 -------------------PNQ--KKGQWSQEEYQKLFDLVNMDLRMRALEEKKTKHGMLRDNISWEAISDKL------- 543 (563)
Q Consensus 492 -------------------p~i--kkG~WTqEED~kLielV~e~Lr~k~~~e~k~~~G~~~d~IsWs~IS~~L------- 543 (563)
+.. +...||++||.-|+-+|. .+|. .....|..|-..+
T Consensus 203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~-------------k~G~-~~~g~we~Ir~~Ir~~p~Fr 268 (374)
T 2y9y_A 203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLF-------------KYGL-DRDDVYELVRDEIRDCPLFE 268 (374)
T ss_dssp HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHH-------------HHTT-CSSCCHHHHHHHHHHCSGGG
T ss_pred HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHH-------------Hhcc-CCCChHHHHHHHHHhCcchh
Confidence 000 234699999999999998 6773 2335899995542
Q ss_pred -----CCCCHHHHHHHHHhcc
Q 035712 544 -----ATRSNAICCMKWYDQL 559 (563)
Q Consensus 544 -----gtRS~~QCR~RW~~iL 559 (563)
.+||+..+..|=..+|
T Consensus 269 FDwF~kSRT~~EL~rRc~tLi 289 (374)
T 2y9y_A 269 LDFYFRSRTPVELARRGNTLL 289 (374)
T ss_dssp SCHHHHTCCHHHHHHHHHHHH
T ss_pred hhHHHhcCCHHHHHHHHHHHH
Confidence 3699988887766554
No 93
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.15 E-value=0.11 Score=49.44 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=24.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-hhHHHHh
Q 035712 446 NRKWTPEELELVRKFHEKHGS-NWKMLAN 473 (563)
Q Consensus 446 KGkWT~EEDekLielV~kyGn-~W~~IAk 473 (563)
...||++||..|+..+.+||- +|..|-.
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~ 162 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKM 162 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence 346999999999999999995 9999976
No 94
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=91.07 E-value=1.5 Score=46.33 Aligned_cols=47 Identities=11% Similarity=0.183 Sum_probs=39.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC----hhHHHHhh------------h-CCChhhHHHHHHHhhc
Q 035712 445 ENRKWTPEELELVRKFHEKHGS----NWKMLANA------------L-GKHRFHVKDAWRRVRL 491 (563)
Q Consensus 445 kKGkWT~EEDekLielV~kyGn----~W~~IAk~------------L-GRT~~QCRdRWr~iL~ 491 (563)
....||.+||..|+.++.+||- .|..|-.. | .||+..|..|...++.
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~ 290 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQ 290 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHH
Confidence 4568999999999999999986 69999554 2 4999999999988864
No 95
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=90.71 E-value=0.58 Score=37.86 Aligned_cols=45 Identities=16% Similarity=0.129 Sum_probs=39.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCh---hHHHHhhh---CCChhhHHHHHHHh
Q 035712 445 ENRKWTPEELELVRKFHEKHGSN---WKMLANAL---GKHRFHVKDAWRRV 489 (563)
Q Consensus 445 kKGkWT~EEDekLielV~kyGn~---W~~IAk~L---GRT~~QCRdRWr~i 489 (563)
.+-.||+|.-...+.+|..+|.+ |..|.+.| |.|..+|+.+.+.+
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 46799999999999999999974 78999998 57999999887765
No 96
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=69.06 E-value=11 Score=35.59 Aligned_cols=49 Identities=18% Similarity=0.135 Sum_probs=31.4
Q ss_pred cHHHHHhHCCCCCHH---HHHHHHHHhcC-C-CCCCCCCHHHHHHHH--------HHHHHhC
Q 035712 417 CWKEIGSALPWRPYD---SIYYRAHIIFQ-R-DENRKWTPEELELVR--------KFHEKHG 465 (563)
Q Consensus 417 ~Wk~IA~~LPgRs~k---qcy~Rwrr~L~-p-~kKGkWT~EEDekLi--------elV~kyG 465 (563)
+=..|-.+|-+.+.. .+...|..-.. | +..|-||+|+|+.|. .|..+||
T Consensus 80 fs~~Ii~ALs~tsM~~p~~VL~~l~~GkgiP~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG 141 (168)
T 3cz6_A 80 FSTSILTCLSGDLMVFPRYFLNMFKDNVNPPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG 141 (168)
T ss_dssp HHHHHHHHTTTCGGGHHHHHHHHHHHTCSSCTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC
T ss_pred cHHHHHHHhcCCcccCHHHHHHHHHhCCCCCCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC
Confidence 455565566554433 45555554444 4 689999999998875 4556665
No 97
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=65.86 E-value=17 Score=29.27 Aligned_cols=49 Identities=14% Similarity=0.194 Sum_probs=39.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhHHHHHHHHHHhhhcCCCCCCCChHHHHhHcC--CCCHHHHHHHHHh
Q 035712 494 QKKGQWSQEEYQKLFDLVNMDLRMRALEEKKTKHGMLRDNISWEAISDKLA--TRSNAICCMKWYD 557 (563)
Q Consensus 494 ikkG~WTqEED~kLielV~e~Lr~k~~~e~k~~~G~~~d~IsWs~IS~~Lg--tRS~~QCR~RW~~ 557 (563)
..+-.||+|.-..++++|. ..| .+...|..|-+.|+ +.|..++..+...
T Consensus 5 k~r~~WT~elH~~Fv~Av~-------------~LG--~~~AtPk~Il~~M~v~gLT~~~VkSHLQK 55 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVD-------------HLG--VERAVPKKILDLMNVDKLTRENVASHLQK 55 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHH-------------HHC--TTTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHH-------------HhC--CCCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence 4566899999999999998 455 24467899999996 7899999877543
No 98
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=61.27 E-value=6.1 Score=39.84 Aligned_cols=29 Identities=28% Similarity=0.331 Sum_probs=26.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC-hhHHHHh
Q 035712 445 ENRKWTPEELELVRKFHEKHGS-NWKMLAN 473 (563)
Q Consensus 445 kKGkWT~EEDekLielV~kyGn-~W~~IAk 473 (563)
-...|+.+||..|+..+.+||- .|..|..
T Consensus 167 W~c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 167 WSSNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 3468999999999999999999 9999976
No 99
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=58.94 E-value=11 Score=28.28 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHHHhCChhHHHHhhhCCChhhHHHHHHHhh
Q 035712 448 KWTPEELELVRKFHEKHGSNWKMLANALGKHRFHVKDAWRRVR 490 (563)
Q Consensus 448 kWT~EEDekLielV~kyGn~W~~IAk~LGRT~~QCRdRWr~iL 490 (563)
.+++.+ ..++.++-..|..+..||..||-|...|+.+....+
T Consensus 15 ~L~~~~-r~il~l~~~~g~s~~eIA~~lgis~~tv~~~~~ra~ 56 (70)
T 2o8x_A 15 DLTTDQ-REALLLTQLLGLSYADAAAVCGCPVGTIRSRVARAR 56 (70)
T ss_dssp SSCHHH-HHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred hCCHHH-HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456544 455556567899999999999999999998877764
No 100
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=56.86 E-value=96 Score=26.75 Aligned_cols=65 Identities=9% Similarity=0.007 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHHHHHHhCChhHHHHhhhCCChhhHHHH---HHHh--hcccCC----CCCCCHHHHHHHHHHHH
Q 035712 447 RKWTPEELELVRKFHEKHGSNWKMLANALGKHRFHVKDA---WRRV--RLPNQK----KGQWSQEEYQKLFDLVN 512 (563)
Q Consensus 447 GkWT~EEDekLielV~kyGn~W~~IAk~LGRT~~QCRdR---Wr~i--L~p~ik----kG~WTqEED~kLielV~ 512 (563)
..+|.++-..++.++. .|.....||..||.+...|+.- |... +.+... ....|.+....|+.++.
T Consensus 31 ~~~s~e~r~~iv~~~~-~G~s~~~iA~~lgis~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 104 (149)
T 1k78_A 31 RPLPDVVRQRIVELAH-QGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKR 104 (149)
T ss_dssp SCCCHHHHHHHHHHHH-TTCCHHHHHHHHTCCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 4789999999988884 6889999999999887776533 3222 112112 22467777777777775
No 101
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=52.58 E-value=16 Score=28.34 Aligned_cols=42 Identities=7% Similarity=0.077 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHH---hCChhHHHHhhhCCChhhHHHHHHHhh
Q 035712 449 WTPEELELVRKFHEK---HGSNWKMLANALGKHRFHVKDAWRRVR 490 (563)
Q Consensus 449 WT~EEDekLielV~k---yGn~W~~IAk~LGRT~~QCRdRWr~iL 490 (563)
.++.|-+.|...+-. .|..|..||..||-|...|+.+....+
T Consensus 11 L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~ 55 (73)
T 1ku3_A 11 LSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKAL 55 (73)
T ss_dssp SCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555444443322 678999999999999999998877765
No 102
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=51.87 E-value=1.1e+02 Score=26.78 Aligned_cols=64 Identities=11% Similarity=-0.047 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHHHHHHHhCChhHHHHhhhCCChhhHHHHHHHhh------cccCC----CCCCCHHHHHHHHHHHH
Q 035712 447 RKWTPEELELVRKFHEKHGSNWKMLANALGKHRFHVKDAWRRVR------LPNQK----KGQWSQEEYQKLFDLVN 512 (563)
Q Consensus 447 GkWT~EEDekLielV~kyGn~W~~IAk~LGRT~~QCRdRWr~iL------~p~ik----kG~WTqEED~kLielV~ 512 (563)
...|.++-..++.++ .-|.....||..||.+...|+ +|.... .+... ....|.+....|+.++.
T Consensus 24 ~~~s~e~r~~ii~l~-~~G~s~~~IA~~lgis~~TV~-rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 97 (159)
T 2k27_A 24 RPLPEVVRQRIVDLA-HQGVRPCDISRQLRVSHGCVS-KILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKR 97 (159)
T ss_dssp CSSCHHHHHHHHHHH-HHTCCHHHHHHHHTCCSHHHH-HHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHH-HHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 368899988888888 468899999999998877766 454332 11111 23467777777777775
No 103
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=45.31 E-value=19 Score=27.51 Aligned_cols=42 Identities=10% Similarity=0.090 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHHH---HhCChhHHHHhhhCCChhhHHHHHHHhhc
Q 035712 450 TPEELELVRKFHE---KHGSNWKMLANALGKHRFHVKDAWRRVRL 491 (563)
Q Consensus 450 T~EEDekLielV~---kyGn~W~~IAk~LGRT~~QCRdRWr~iL~ 491 (563)
++.|-+.|...+- ..|..+..||..||-|...|+.+....+.
T Consensus 7 ~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 7 TAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALR 51 (68)
T ss_dssp CHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4444444443332 35789999999999999999998887763
No 104
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=44.82 E-value=1.4e+02 Score=25.00 Aligned_cols=71 Identities=10% Similarity=0.062 Sum_probs=46.3
Q ss_pred cHHHHHhHCCCCCHHHHHHHHHHhcC------CCCCCCCCHHHHHHHHHHHHHhCChhHHHHhhhC--CChhhHHHHHHH
Q 035712 417 CWKEIGSALPWRPYDSIYYRAHIIFQ------RDENRKWTPEELELVRKFHEKHGSNWKMLANALG--KHRFHVKDAWRR 488 (563)
Q Consensus 417 ~Wk~IA~~LPgRs~kqcy~Rwrr~L~------p~kKGkWT~EEDekLielV~kyGn~W~~IAk~LG--RT~~QCRdRWr~ 488 (563)
.-..||..| +.+...||..+.+... +......|++++..|+.+...-+..-..|+..|| -+...|+...+.
T Consensus 24 s~~~ia~~l-gis~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s~~~i~~~lg~~~s~~tV~r~l~~ 102 (141)
T 1u78_A 24 SLHEMSRKI-SRSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKTARDIRNELQLSASKRTILNVIKR 102 (141)
T ss_dssp CHHHHHHHH-TCCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCCHHHHHHHTTCCSCHHHHHHHHHH
T ss_pred CHHHHHHHH-CcCHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCccHHHHHHHHHH
Confidence 467889888 6888888765544321 1233468999998888883332335678888887 566666654433
No 105
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=44.35 E-value=51 Score=22.19 Aligned_cols=40 Identities=5% Similarity=0.093 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHHHHHhCChhHHHHhhhCCChhhHHHHHH
Q 035712 447 RKWTPEELELVRKFHEKHGSNWKMLANALGKHRFHVKDAWR 487 (563)
Q Consensus 447 GkWT~EEDekLielV~kyGn~W~~IAk~LGRT~~QCRdRWr 487 (563)
...|+++-..++.++ ..|.....||+.||-+...|+....
T Consensus 4 ~~l~~~~~~~i~~~~-~~g~s~~~IA~~lgis~~Tv~~~~~ 43 (51)
T 1tc3_C 4 SALSDTERAQLDVMK-LLNVSLHEMSRKISRSRHCIRVYLK 43 (51)
T ss_dssp CCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHh
Confidence 356777777777766 4588999999999999888876544
No 106
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=42.22 E-value=29 Score=31.18 Aligned_cols=40 Identities=8% Similarity=0.003 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhCC-hhHHHHhhhCCChhhHHHHHHHhhc
Q 035712 452 EELELVRKFHEKHGS-NWKMLANALGKHRFHVKDAWRRVRL 491 (563)
Q Consensus 452 EEDekLielV~kyGn-~W~~IAk~LGRT~~QCRdRWr~iL~ 491 (563)
+-|..|+.+....|. .|..||+.+|-|+..|+.|++.+..
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~ 43 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEE 43 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 347778888887777 9999999999999999999999864
No 107
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=39.74 E-value=66 Score=29.99 Aligned_cols=51 Identities=10% Similarity=0.070 Sum_probs=37.0
Q ss_pred HHHHHHHHHhCChhHHHHhhhCCChhhHHHHHHHhhcccCCCCCCCHHHHHHHHHHHH
Q 035712 455 ELVRKFHEKHGSNWKMLANALGKHRFHVKDAWRRVRLPNQKKGQWSQEEYQKLFDLVN 512 (563)
Q Consensus 455 ekLielV~kyGn~W~~IAk~LGRT~~QCRdRWr~iL~p~ikkG~WTqEED~kLielV~ 512 (563)
+.|+.+-..-|-.|..||+.+|+|..-+..-. .-.-.-|.+.-.+|.+++.
T Consensus 16 ~~I~~AK~~KGLTwe~IAe~iG~S~v~vtaa~-------lGQ~~ls~e~A~kLa~~Lg 66 (156)
T 1dw9_A 16 DAILLSKAKKDLSFAEIADGTGLAEAFVTAAL-------LGQQALPADAARLVGAKLD 66 (156)
T ss_dssp HHHHHHHHHTTCCHHHHHTTSSSCHHHHHHHH-------TTSSCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHH-------cCCCCCCHHHHHHHHHHhC
Confidence 56667777789999999999999987554322 2334567777777777775
No 108
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=38.97 E-value=33 Score=30.49 Aligned_cols=44 Identities=27% Similarity=0.342 Sum_probs=34.9
Q ss_pred ChhHHHHhhhC--CC----hhhHHHHHHHhhcccCCCCCCCHHHHHHHHHHHH
Q 035712 466 SNWKMLANALG--KH----RFHVKDAWRRVRLPNQKKGQWSQEEYQKLFDLVN 512 (563)
Q Consensus 466 n~W~~IAk~LG--RT----~~QCRdRWr~iL~p~ikkG~WTqEED~kLielV~ 512 (563)
+.|..||..|| .+ +..++..|..+|.+- ...+++|-..|.+-|.
T Consensus 64 k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y---E~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 64 KKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY---DSLSPEEHRRLEKEVL 113 (121)
T ss_dssp TCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH---HHCCHHHHHHHHHHHH
T ss_pred CcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH---HCcCHHHHhhHHHHHH
Confidence 38999999995 32 467899999998642 2388899999999887
No 109
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=36.68 E-value=38 Score=27.37 Aligned_cols=39 Identities=21% Similarity=0.052 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhCChhHHHHhhhCCChhhHHHHHHHhh
Q 035712 452 EELELVRKFHEKHGSNWKMLANALGKHRFHVKDAWRRVR 490 (563)
Q Consensus 452 EEDekLielV~kyGn~W~~IAk~LGRT~~QCRdRWr~iL 490 (563)
+....++.++-..|.....||..||-|...|+.+.++.+
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~lgis~~tV~~~l~ra~ 78 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAV 78 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 455566667667788999999999999999998887774
No 110
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=35.33 E-value=1.8e+02 Score=23.56 Aligned_cols=65 Identities=11% Similarity=0.032 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHHHHHHHhCChhHHHHhhhCCChhhHHH---HHHHh--hcccC----CCCCCCHHHHHHHHHHHH
Q 035712 447 RKWTPEELELVRKFHEKHGSNWKMLANALGKHRFHVKD---AWRRV--RLPNQ----KKGQWSQEEYQKLFDLVN 512 (563)
Q Consensus 447 GkWT~EEDekLielV~kyGn~W~~IAk~LGRT~~QCRd---RWr~i--L~p~i----kkG~WTqEED~kLielV~ 512 (563)
.+.|.++-..++.++. .|.....||..||.+...|+. +|... +.+.. .....+++....|+.++.
T Consensus 16 ~~~s~~~r~~i~~~~~-~g~s~~~ia~~lgis~~Tv~~w~~~~~~~g~~~~~~~~g~~~~~l~~~~~~~i~~~~~ 89 (128)
T 1pdn_C 16 RPLPNNIRLKIVEMAA-DGIRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEIENRIEEYKR 89 (128)
T ss_dssp SCCCHHHHHHHHHHHH-TTCCHHHHHHHHTCCHHHHHHHHHHHHHHCCSSCCCCSCCCCCSSCSTHHHHHHHTTT
T ss_pred CcCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHhhCCcccccCCCCCCCcCCHHHHHHHHHHHH
Confidence 3689999888888885 688999999999988776653 33322 11111 122467666666666654
No 111
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=35.09 E-value=69 Score=24.05 Aligned_cols=43 Identities=16% Similarity=0.065 Sum_probs=35.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCChhHHHHhhhCCChhhHHHHHHHhh
Q 035712 446 NRKWTPEELELVRKFHEKHGSNWKMLANALGKHRFHVKDAWRRVR 490 (563)
Q Consensus 446 KGkWT~EEDekLielV~kyGn~W~~IAk~LGRT~~QCRdRWr~iL 490 (563)
-..+|+.|-+.|..+ ..|.....||..||-|...|+.+...++
T Consensus 9 ~~~L~~~e~~il~~~--~~g~s~~eIA~~l~is~~tV~~~~~~~~ 51 (74)
T 1fse_A 9 KPLLTKREREVFELL--VQDKTTKEIASELFISEKTVRNHISNAM 51 (74)
T ss_dssp CCCCCHHHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH--HcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 356888888777664 6788999999999999999998888775
No 112
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=34.89 E-value=35 Score=29.73 Aligned_cols=27 Identities=26% Similarity=0.555 Sum_probs=21.9
Q ss_pred ChhHHHHhhhC-CChhhHHHHHHHhhcc
Q 035712 466 SNWKMLANALG-KHRFHVKDAWRRVRLP 492 (563)
Q Consensus 466 n~W~~IAk~LG-RT~~QCRdRWr~iL~p 492 (563)
..|..||..|| -.+..++..|..+|.+
T Consensus 71 ~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 71 QQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp TCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred CcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 37999999996 3478889999988854
No 113
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=32.88 E-value=2.3e+02 Score=24.22 Aligned_cols=79 Identities=11% Similarity=0.091 Sum_probs=49.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCCCccchhhhhcccCCCcccccHHHHHhHCCCCCHHHHHHHHHHh-----cCCC-C
Q 035712 372 RGKRFSKEEDEMIKRAVMNYIETHGLGEEGLNMVLHCRSHPEVKHCWKEIGSALPWRPYDSIYYRAHII-----FQRD-E 445 (563)
Q Consensus 372 KkGkWT~EEDeiL~kaV~ky~~~hGlsee~L~~ll~s~r~~e~k~~Wk~IA~~LPgRs~kqcy~Rwrr~-----L~p~-k 445 (563)
.+..+|.++-..+..++ ..|+ ....||..| +.+...|+..+.++ +.+. .
T Consensus 29 ~~~~~s~e~r~~iv~~~-----~~G~-------------------s~~~iA~~l-gis~~TV~rw~~~~~~~G~~~~~~r 83 (149)
T 1k78_A 29 NGRPLPDVVRQRIVELA-----HQGV-------------------RPCDISRQL-RVSHGCVSKILGRYYETGSIKPGVI 83 (149)
T ss_dssp TTSCCCHHHHHHHHHHH-----HTTC-------------------CHHHHHHHH-TCCHHHHHHHHHHHHHHSCCCCCCC
T ss_pred CCCCCCHHHHHHHHHHH-----HcCC-------------------CHHHHHHHH-CcCHHHHHHHHHHHHHcCCCCccCC
Confidence 34579988876665443 1344 567889988 67887776544432 1221 1
Q ss_pred ----CCCCCHHHHHHHHHHHHHhCC-hhHHHHhhh
Q 035712 446 ----NRKWTPEELELVRKFHEKHGS-NWKMLANAL 475 (563)
Q Consensus 446 ----KGkWT~EEDekLielV~kyGn-~W~~IAk~L 475 (563)
....|++..+.|..++...+. .-..|+..|
T Consensus 84 ~gr~~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l 118 (149)
T 1k78_A 84 GGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRL 118 (149)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCcchhHHHHHHHH
Confidence 345789888899988876543 334566555
No 114
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=32.87 E-value=39 Score=28.72 Aligned_cols=27 Identities=22% Similarity=0.434 Sum_probs=20.7
Q ss_pred ChhHHHHhhhCCC-----hhhHHHHHHHhhcc
Q 035712 466 SNWKMLANALGKH-----RFHVKDAWRRVRLP 492 (563)
Q Consensus 466 n~W~~IAk~LGRT-----~~QCRdRWr~iL~p 492 (563)
..|..||..||-. +.+++..|..+|.+
T Consensus 66 ~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 66 RKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp TTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 3799999999642 46788888888753
No 115
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=30.98 E-value=53 Score=26.36 Aligned_cols=27 Identities=4% Similarity=0.014 Sum_probs=23.8
Q ss_pred hCChhHHHHhhhCCChhhHHHHHHHhh
Q 035712 464 HGSNWKMLANALGKHRFHVKDAWRRVR 490 (563)
Q Consensus 464 yGn~W~~IAk~LGRT~~QCRdRWr~iL 490 (563)
.|..+..||..||-|...|+.+..+.+
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~ 63 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKAL 63 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 577999999999999999998877775
No 116
>2ou3_A Tellurite resistance protein of COG3793; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE I3A; 1.85A {Nostoc punctiforme} SCOP: a.287.1.1
Probab=30.12 E-value=2.4e+02 Score=25.19 Aligned_cols=84 Identities=12% Similarity=0.075 Sum_probs=52.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCccchhhhhcccCCCcccccHHHHHhHCCCCC--HH-HHHHHHHHhcCCCCCCCC
Q 035712 373 GKRFSKEEDEMIKRAVMNYIETHGLGEEGLNMVLHCRSHPEVKHCWKEIGSALPWRP--YD-SIYYRAHIIFQRDENRKW 449 (563)
Q Consensus 373 kGkWT~EEDeiL~kaV~ky~~~hGlsee~L~~ll~s~r~~e~k~~Wk~IA~~LPgRs--~k-qcy~Rwrr~L~p~kKGkW 449 (563)
.|..|++|.+.|...+.. .+++.+....++. ... ...-..+...++... .. -+..-|.-.+. .|..
T Consensus 43 DG~v~~~E~~~i~~~~~~----~~l~~~~~~~l~~-~~~---~~~l~~~~~~i~~~~~~~~~~l~~l~~vA~A---DG~~ 111 (161)
T 2ou3_A 43 DGVISPEEKDWALGFCAS----WGVADWVIEDLKT-YEA---DEALEEVIARSPQVSMAQRDILLSAIWVSAA---DGEL 111 (161)
T ss_dssp SSCCCHHHHHHHHHHHHH----TTCCHHHHHHHHH-CCC---CSCHHHHHTTCTTGGGCHHHHHHHHHHHHHT---TSSC
T ss_pred cCCCCHHHHHHHHHHHHH----cCCCHHHHHHHhh-ccC---CCCHHHHHHHHHHHhccHHHHHHHHHHHHHH---cCCC
Confidence 389999999999887654 4777665555554 111 123345555554211 11 22233343333 4889
Q ss_pred CHHHHHHHHHHHHHhCCh
Q 035712 450 TPEELELVRKFHEKHGSN 467 (563)
Q Consensus 450 T~EEDekLielV~kyGn~ 467 (563)
++.|+..|..+....|-+
T Consensus 112 ~~~E~~~L~~iA~~Lgls 129 (161)
T 2ou3_A 112 HEKEKAKIRKMATILGIK 129 (161)
T ss_dssp CHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHcCCC
Confidence 999999999999988863
No 117
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=30.00 E-value=45 Score=29.33 Aligned_cols=27 Identities=22% Similarity=0.570 Sum_probs=20.4
Q ss_pred ChhHHHHhhhCCC-----hhhHHHHHHHhhcc
Q 035712 466 SNWKMLANALGKH-----RFHVKDAWRRVRLP 492 (563)
Q Consensus 466 n~W~~IAk~LGRT-----~~QCRdRWr~iL~p 492 (563)
..|..|+..||-. +.+++..|.++|.+
T Consensus 64 k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 64 RKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp TTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 3899999999632 35788888888753
No 118
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=29.86 E-value=43 Score=28.55 Aligned_cols=27 Identities=26% Similarity=0.566 Sum_probs=21.4
Q ss_pred ChhHHHHhhhCC------ChhhHHHHHHHhhcc
Q 035712 466 SNWKMLANALGK------HRFHVKDAWRRVRLP 492 (563)
Q Consensus 466 n~W~~IAk~LGR------T~~QCRdRWr~iL~p 492 (563)
..|..||..||= .+.+++..|..+|.+
T Consensus 55 ~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 55 RQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp TTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred CcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 389999999962 246789999999864
No 119
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=28.90 E-value=85 Score=23.90 Aligned_cols=38 Identities=11% Similarity=0.041 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhCChhHHHHhhhCCChhhHHHHHHHh
Q 035712 452 EELELVRKFHEKHGSNWKMLANALGKHRFHVKDAWRRV 489 (563)
Q Consensus 452 EEDekLielV~kyGn~W~~IAk~LGRT~~QCRdRWr~i 489 (563)
-|...|..+...+|.++...|+.||=+...++.+...+
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~LGisr~tL~rklkk~ 56 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEIGIDLSNLYRKIKSL 56 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHCcCHHHHHHHHHHh
Confidence 36678888999999999999999998888887776655
No 120
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=28.04 E-value=55 Score=28.52 Aligned_cols=38 Identities=18% Similarity=0.352 Sum_probs=27.5
Q ss_pred HHHHHHHHHhCC--------hhHHHHhhhCCC-----hhhHHHHHHHhhcc
Q 035712 455 ELVRKFHEKHGS--------NWKMLANALGKH-----RFHVKDAWRRVRLP 492 (563)
Q Consensus 455 ekLielV~kyGn--------~W~~IAk~LGRT-----~~QCRdRWr~iL~p 492 (563)
-.|..+|..+|- .|..||..||=. +.+++..|.++|.+
T Consensus 43 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 43 YSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 345666666653 799999999632 56788889888754
No 121
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=27.07 E-value=62 Score=28.57 Aligned_cols=28 Identities=18% Similarity=0.158 Sum_probs=24.1
Q ss_pred HhCChhHHHHhhhCCChhhHHHHHHHhh
Q 035712 463 KHGSNWKMLANALGKHRFHVKDAWRRVR 490 (563)
Q Consensus 463 kyGn~W~~IAk~LGRT~~QCRdRWr~iL 490 (563)
..|-....||..||-|...|+.+..+.+
T Consensus 154 ~~g~s~~EIA~~lgis~~tV~~~l~ra~ 181 (194)
T 1or7_A 154 LDGLSYEEIAAIMDCPVGTVRSRIFRAR 181 (194)
T ss_dssp TTCCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4477999999999999999998887764
No 122
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=26.53 E-value=1.1e+02 Score=25.11 Aligned_cols=45 Identities=18% Similarity=0.208 Sum_probs=36.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCChhHHHHhhhCCChhhHHHHHHHhhc
Q 035712 445 ENRKWTPEELELVRKFHEKHGSNWKMLANALGKHRFHVKDAWRRVRL 491 (563)
Q Consensus 445 kKGkWT~EEDekLielV~kyGn~W~~IAk~LGRT~~QCRdRWr~iL~ 491 (563)
.....|+.|-+.|..++ .|..-..||..||-+...|+.+..+++.
T Consensus 26 ~~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L~iS~~TV~~~~~~i~~ 70 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE--KGFTNQEIADALHLSKRSIEYSLTSIFN 70 (90)
T ss_dssp ---CCCHHHHHHHHHHH--TTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34578998888887766 8999999999999999999999988863
No 123
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=26.02 E-value=81 Score=24.13 Aligned_cols=41 Identities=17% Similarity=0.039 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHHhCChhHHHHhhhCCChhhHHHHHHHhhc
Q 035712 449 WTPEELELVRKFHEKHGSNWKMLANALGKHRFHVKDAWRRVRL 491 (563)
Q Consensus 449 WT~EEDekLielV~kyGn~W~~IAk~LGRT~~QCRdRWr~iL~ 491 (563)
+|+.|-+.|.. + ..|.....||..||-|...|+.+..+.+.
T Consensus 17 L~~~e~~vl~l-~-~~g~s~~eIA~~l~is~~tV~~~~~r~~~ 57 (79)
T 1x3u_A 17 LSERERQVLSA-V-VAGLPNKSIAYDLDISPRTVEVHRANVMA 57 (79)
T ss_dssp HCHHHHHHHHH-H-TTTCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHH-H-HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 46666655554 4 67889999999999999999988888763
No 124
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=25.18 E-value=3.4e+02 Score=23.57 Aligned_cols=93 Identities=11% Similarity=0.072 Sum_probs=54.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCccchhhhhcccCCCcccccHHHHHhHCCCCCHHHHHHHHHHhc-----CCC---
Q 035712 373 GKRFSKEEDEMIKRAVMNYIETHGLGEEGLNMVLHCRSHPEVKHCWKEIGSALPWRPYDSIYYRAHIIF-----QRD--- 444 (563)
Q Consensus 373 kGkWT~EEDeiL~kaV~ky~~~hGlsee~L~~ll~s~r~~e~k~~Wk~IA~~LPgRs~kqcy~Rwrr~L-----~p~--- 444 (563)
..++|.++-..+..++. .|+ ....||..| +.+...|+..+.++. .+.
T Consensus 23 ~~~~s~e~r~~ii~l~~-----~G~-------------------s~~~IA~~l-gis~~TV~rwl~r~~~~G~~~~~~r~ 77 (159)
T 2k27_A 23 GRPLPEVVRQRIVDLAH-----QGV-------------------RPCDISRQL-RVSHGCVSKILGRYYETGSIRPGVIG 77 (159)
T ss_dssp SCSSCHHHHHHHHHHHH-----HTC-------------------CHHHHHHHH-TCCSHHHHHHHCCSSTTSCCCCCCCC
T ss_pred CCCCCHHHHHHHHHHHH-----cCC-------------------CHHHHHHHH-CcCHHHHHHHHHHHHhcCCccCCCCC
Confidence 34689888766654431 244 567889888 677777765443321 111
Q ss_pred --CCCCCCHHHHHHHHHHHHHhCC-hhHHHHhhh----------CCChhhHHHHHHHhh
Q 035712 445 --ENRKWTPEELELVRKFHEKHGS-NWKMLANAL----------GKHRFHVKDAWRRVR 490 (563)
Q Consensus 445 --kKGkWT~EEDekLielV~kyGn-~W~~IAk~L----------GRT~~QCRdRWr~iL 490 (563)
.....|++..+.|..++...+. .-..|+..| .-+...|+...+..+
T Consensus 78 gr~~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~ 136 (159)
T 2k27_A 78 GSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKV 136 (159)
T ss_dssp CCCCCCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHh
Confidence 1345788888888888876542 334555544 134555555444443
No 125
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=25.18 E-value=67 Score=28.31 Aligned_cols=39 Identities=15% Similarity=0.344 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhCC--------hhHHHHhhhC--CC----hhhHHHHHHHhhcc
Q 035712 454 LELVRKFHEKHGS--------NWKMLANALG--KH----RFHVKDAWRRVRLP 492 (563)
Q Consensus 454 DekLielV~kyGn--------~W~~IAk~LG--RT----~~QCRdRWr~iL~p 492 (563)
--.|..+|..+|- .|..||..|| .+ +.+++..|..+|.+
T Consensus 54 L~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 54 LYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 3566777777764 8999999996 22 56789999999864
No 126
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=24.83 E-value=62 Score=28.45 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=19.8
Q ss_pred hhHHHHhhhCCC-----hhhHHHHHHHhhcc
Q 035712 467 NWKMLANALGKH-----RFHVKDAWRRVRLP 492 (563)
Q Consensus 467 ~W~~IAk~LGRT-----~~QCRdRWr~iL~p 492 (563)
.|..||..||=. +.+++..|.++|.+
T Consensus 74 ~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 74 KWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp CHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred cHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 899999999632 45778888888753
No 127
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=24.66 E-value=85 Score=27.31 Aligned_cols=39 Identities=13% Similarity=0.175 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhCC-hhHHHHhhhCCChhhHHHHHHHhhc
Q 035712 453 ELELVRKFHEKHGS-NWKMLANALGKHRFHVKDAWRRVRL 491 (563)
Q Consensus 453 EDekLielV~kyGn-~W~~IAk~LGRT~~QCRdRWr~iL~ 491 (563)
-|..|+.+....|. .|..||+.+|=|+..|+.++..+..
T Consensus 10 ~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~ 49 (151)
T 2dbb_A 10 VDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKK 49 (151)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34556666666665 9999999999999999999988753
No 128
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=24.53 E-value=76 Score=27.09 Aligned_cols=41 Identities=17% Similarity=0.099 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHHHhCChhHHHHhhhCCChhhHHHHHHHhh
Q 035712 449 WTPEELELVRKFHEKHGSNWKMLANALGKHRFHVKDAWRRVR 490 (563)
Q Consensus 449 WT~EEDekLielV~kyGn~W~~IAk~LGRT~~QCRdRWr~iL 490 (563)
+|+ ....++.++-..|-....||..||-|...|+.+.++.+
T Consensus 26 L~~-~~r~vl~l~~~~g~s~~EIA~~lgiS~~tV~~~l~ra~ 66 (113)
T 1xsv_A 26 LTN-KQRNYLELFYLEDYSLSEIADTFNVSRQAVYDNIRRTG 66 (113)
T ss_dssp SCH-HHHHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 444 44555666667789999999999999999998887775
No 129
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=24.38 E-value=3e+02 Score=22.78 Aligned_cols=63 Identities=5% Similarity=0.055 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHHHHHhCChhHHHHhhhCCChhhHHHHHHHhhccc-----CCCCCCCHHHHHHHHHH
Q 035712 447 RKWTPEELELVRKFHEKHGSNWKMLANALGKHRFHVKDAWRRVRLPN-----QKKGQWSQEEYQKLFDL 510 (563)
Q Consensus 447 GkWT~EEDekLielV~kyGn~W~~IAk~LGRT~~QCRdRWr~iL~p~-----ikkG~WTqEED~kLiel 510 (563)
...|.++-..++.++ .-|..-..||..||.+...|+.-........ ......|+++...|+.+
T Consensus 5 ~~~s~~~r~~i~~~~-~~G~s~~~ia~~lgis~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~ 72 (141)
T 1u78_A 5 SALSDTERAQLDVMK-LLNVSLHEMSRKISRSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRA 72 (141)
T ss_dssp CCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHH
Confidence 468888888888887 4688999999999999888864333322111 12235778877766665
No 130
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=24.26 E-value=1.2e+02 Score=26.96 Aligned_cols=17 Identities=18% Similarity=0.190 Sum_probs=12.3
Q ss_pred CCCHHHHHHHHHHHHHH
Q 035712 375 RFSKEEDEMIKRAVMNY 391 (563)
Q Consensus 375 kWT~EEDeiL~kaV~ky 391 (563)
.+|+++...|..+...|
T Consensus 50 ~ls~~~~~~l~~~F~~~ 66 (196)
T 3dtp_E 50 MFTQHQVQEFKEAFQLI 66 (196)
T ss_dssp SSCTTTHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHH
Confidence 57777777777776666
No 131
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=24.02 E-value=1.1e+02 Score=27.76 Aligned_cols=41 Identities=15% Similarity=0.220 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhCC-hhHHHHhhhCCChhhHHHHHHHhhcc
Q 035712 452 EELELVRKFHEKHGS-NWKMLANALGKHRFHVKDAWRRVRLP 492 (563)
Q Consensus 452 EEDekLielV~kyGn-~W~~IAk~LGRT~~QCRdRWr~iL~p 492 (563)
+-|..|+.+....|. .|..||+.+|-|+..|+.|++.+...
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~ 68 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRES 68 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 345566666666666 99999999999999999999988643
No 132
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=23.07 E-value=93 Score=27.18 Aligned_cols=38 Identities=13% Similarity=0.226 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhCC-hhHHHHhhhCCChhhHHHHHHHhhc
Q 035712 454 LELVRKFHEKHGS-NWKMLANALGKHRFHVKDAWRRVRL 491 (563)
Q Consensus 454 DekLielV~kyGn-~W~~IAk~LGRT~~QCRdRWr~iL~ 491 (563)
|..|+.+....|. .|..||+.+|-|...|+.|+..+..
T Consensus 9 ~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~ 47 (151)
T 2cyy_A 9 DKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRE 47 (151)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4456666666665 9999999999999999999998854
No 133
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=22.45 E-value=60 Score=28.72 Aligned_cols=26 Identities=27% Similarity=0.574 Sum_probs=20.9
Q ss_pred hhHHHHhhhC-CChhhHHHHHHHhhcc
Q 035712 467 NWKMLANALG-KHRFHVKDAWRRVRLP 492 (563)
Q Consensus 467 ~W~~IAk~LG-RT~~QCRdRWr~iL~p 492 (563)
.|..||..|| -.+..++..|.++|.+
T Consensus 71 ~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 97 (123)
T 1kkx_A 71 QWSMVAQRLQISDYQQLESIYFRILLP 97 (123)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCChHHHHHHHHHHHHHH
Confidence 7999999995 3377888888888754
No 134
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=22.43 E-value=82 Score=26.62 Aligned_cols=37 Identities=22% Similarity=0.318 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhCChhHHHHhhhCCChhhHHHHHHHhh
Q 035712 452 EELELVRKFHEKHGSNWKMLANALGKHRFHVKDAWRRVR 490 (563)
Q Consensus 452 EEDekLielV~kyGn~W~~IAk~LGRT~~QCRdRWr~iL 490 (563)
.+-..|. .-..|-....||..||-|...|+.+..+.+
T Consensus 113 ~~r~v~~--~~~~g~s~~EIA~~lgis~~tV~~~~~ra~ 149 (164)
T 3mzy_A 113 FEKEVLT--YLIRGYSYREIATILSKNLKSIDNTIQRIR 149 (164)
T ss_dssp HHHHHHH--HHTTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444444 345688999999999999999999888774
No 135
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=22.30 E-value=1.2e+02 Score=30.41 Aligned_cols=45 Identities=13% Similarity=-0.030 Sum_probs=35.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---hhHHHHhhh---CCChhhHHHHHHHhh
Q 035712 446 NRKWTPEELELVRKFHEKHGS---NWKMLANAL---GKHRFHVKDAWRRVR 490 (563)
Q Consensus 446 KGkWT~EEDekLielV~kyGn---~W~~IAk~L---GRT~~QCRdRWr~iL 490 (563)
++.||.-|-..|+..+.+||. .|..|+..- .++...+..-|..++
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li 53 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMM 53 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHH
Confidence 689999999999999999996 899997653 567666665555443
No 136
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=22.24 E-value=1.4e+02 Score=24.28 Aligned_cols=43 Identities=21% Similarity=0.132 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHHHHHHhCChhHHHHhhhCCChhhHHHHHHHhhc
Q 035712 447 RKWTPEELELVRKFHEKHGSNWKMLANALGKHRFHVKDAWRRVRL 491 (563)
Q Consensus 447 GkWT~EEDekLielV~kyGn~W~~IAk~LGRT~~QCRdRWr~iL~ 491 (563)
...|+.|-+.|..+ ..|..-..||..||-|...|+.+..+++.
T Consensus 26 ~~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 68 (95)
T 3c57_A 26 SGLTDQERTLLGLL--SEGLTNKQIADRMFLAEKTVKNYVSRLLA 68 (95)
T ss_dssp -CCCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 35788887777664 78889999999999999999988887753
No 137
>2h5n_A Hypothetical protein PG_1108; SAD, MCSG,PSI, structural genomics, PR structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: a.287.1.2
Probab=21.87 E-value=1.8e+02 Score=25.53 Aligned_cols=86 Identities=13% Similarity=0.122 Sum_probs=51.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCccchhhhhcccCCCcccccHHHHHhHCCCCCHHHHHHHHHHhcC-CCCCCCCCH
Q 035712 373 GKRFSKEEDEMIKRAVMNYIETHGLGEEGLNMVLHCRSHPEVKHCWKEIGSALPWRPYDSIYYRAHIIFQ-RDENRKWTP 451 (563)
Q Consensus 373 kGkWT~EEDeiL~kaV~ky~~~hGlsee~L~~ll~s~r~~e~k~~Wk~IA~~LPgRs~kqcy~Rwrr~L~-p~kKGkWT~ 451 (563)
.|..++.|.+.|...+.. .|++..++..++...... .-...+..+..-+..+...-..-++. -...|..++
T Consensus 32 DG~v~~~E~~~l~~~l~~----lgl~~~e~~~l~~~~~~~----~~~~~~~~~~~~~~e~r~~ll~~L~~IA~ADG~i~~ 103 (133)
T 2h5n_A 32 DGKIKPAEIAVMTREFMR----FGILQDQVDLLLKASDSI----EASQAVALIARMDEERKKYVASYLGVIMASDGDIDD 103 (133)
T ss_dssp TSCCCHHHHHHHHHHHGG----GTCCHHHHHHHHHHHTTS----CHHHHHHHHHTSCHHHHHHHHHHHHHHSCBTTBCCH
T ss_pred cCCCCHHHHHHHHHHHHH----hCcCHHHHHHHHHHHHhc----cHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCH
Confidence 388999999999888766 488877666665532211 11111122211122222222222333 345699999
Q ss_pred HHHHHHHHHHHHhCC
Q 035712 452 EELELVRKFHEKHGS 466 (563)
Q Consensus 452 EEDekLielV~kyGn 466 (563)
.|+..|.+.....|-
T Consensus 104 ~E~~lLr~ia~~Lgl 118 (133)
T 2h5n_A 104 NELALWTLISTLCGL 118 (133)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999988887765
No 138
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=21.86 E-value=78 Score=27.48 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhCChhHHHHhhhCCChhhHH
Q 035712 454 LELVRKFHEKHGSNWKMLANALGKHRFHVK 483 (563)
Q Consensus 454 DekLielV~kyGn~W~~IAk~LGRT~~QCR 483 (563)
+..|..+....|.+|..+|..||=+..+|.
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~Lg~s~~~I~ 42 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHLGVSYREVQ 42 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHcCCCHHHHH
Confidence 456778888899999999999986655543
No 139
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=20.99 E-value=1.4e+02 Score=23.61 Aligned_cols=43 Identities=23% Similarity=0.248 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHHHHHHHhCChhHHHHhhhCCChhhHHHHHHHhhc
Q 035712 447 RKWTPEELELVRKFHEKHGSNWKMLANALGKHRFHVKDAWRRVRL 491 (563)
Q Consensus 447 GkWT~EEDekLielV~kyGn~W~~IAk~LGRT~~QCRdRWr~iL~ 491 (563)
...|+.|-+.|.. + ..|..-..||..||-+...|+.+.++++.
T Consensus 20 ~~Lt~~e~~vl~l-~-~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 62 (82)
T 1je8_A 20 NQLTPRERDILKL-I-AQGLPNKMIARRLDITESTVKVHVKHMLK 62 (82)
T ss_dssp GGSCHHHHHHHHH-H-TTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHH-H-HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4678888777666 3 67889999999999999999998887763
No 140
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=20.63 E-value=93 Score=28.17 Aligned_cols=38 Identities=16% Similarity=-0.031 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhCChhHHHHhhhCCChhhHHHHHHHhh
Q 035712 453 ELELVRKFHEKHGSNWKMLANALGKHRFHVKDAWRRVR 490 (563)
Q Consensus 453 EDekLielV~kyGn~W~~IAk~LGRT~~QCRdRWr~iL 490 (563)
.+..++.++-..|-....||..||-|...|+.+..+.+
T Consensus 191 ~~r~vl~l~~~~g~s~~EIA~~lgis~~~V~~~~~ra~ 228 (239)
T 1rp3_A 191 REKLVIQLIFYEELPAKEVAKILETSVSRVSQLKAKAL 228 (239)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 33444444445688999999999999999988877664
No 141
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=20.60 E-value=44 Score=29.40 Aligned_cols=31 Identities=16% Similarity=-0.093 Sum_probs=25.1
Q ss_pred HHHHhCChhHHHHhhhCCChhhHHHHHHHhh
Q 035712 460 FHEKHGSNWKMLANALGKHRFHVKDAWRRVR 490 (563)
Q Consensus 460 lV~kyGn~W~~IAk~LGRT~~QCRdRWr~iL 490 (563)
++-..|-.+..||..||-|...|+.+..+.+
T Consensus 146 l~~~~g~s~~eIA~~lgis~~tV~~~l~ra~ 176 (184)
T 2q1z_A 146 RAFFGDLTHRELAAETGLPLGTIKSRIRLAL 176 (184)
T ss_dssp HHHHSCCSSCCSTTTCCCCCHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3334588999999999999999998887764
No 142
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=20.48 E-value=94 Score=27.14 Aligned_cols=28 Identities=14% Similarity=0.452 Sum_probs=22.4
Q ss_pred HHHHHHHHhCChhHHHHhhhCCChhhHH
Q 035712 456 LVRKFHEKHGSNWKMLANALGKHRFHVK 483 (563)
Q Consensus 456 kLielV~kyGn~W~~IAk~LGRT~~QCR 483 (563)
.|..++...|.+|..+|..||=+..+|.
T Consensus 26 ~l~~Ia~~LG~~Wk~LAR~LGlse~dId 53 (115)
T 2o71_A 26 QINQLAQRLGPEWEPMVLSLGLSQTDIY 53 (115)
T ss_dssp HHHHHHHHCCTTHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHcCCCHHHHH
Confidence 5666688889999999999986666554
No 143
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=20.17 E-value=1.2e+02 Score=25.81 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHHHhCChhHHHHhhhCCChhhHH
Q 035712 450 TPEELELVRKFHEKHGSNWKMLANALGKHRFHVK 483 (563)
Q Consensus 450 T~EEDekLielV~kyGn~W~~IAk~LGRT~~QCR 483 (563)
|.-=+..|..+....|.+|..+|..||=+..+|.
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~Lg~s~~~I~ 47 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELARELQFSVEDIN 47 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHTTCCHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHH
Confidence 4555677778888889999999999987665554
Done!