BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035714
(731 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From
Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion
Channel
Length = 137
Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 87/124 (70%), Positives = 102/124 (82%)
Query: 467 VRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGR 526
VRRVP F MD++LLDAIC+RL L + +Y+VREGDPVNEMLFIIRG LES TT+GGR
Sbjct: 8 VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGR 67
Query: 527 DGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAH 586
GF+N L+ GDFCG+ELLTWAL P S NLPSSTRTV+A+TEVEAFAL A++LKFVA
Sbjct: 68 SGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVAS 127
Query: 587 QFKR 590
QF+R
Sbjct: 128 QFRR 131
>pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human
Hcn4 Channel
Length = 220
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 89/187 (47%), Gaps = 16/187 (8%)
Query: 402 EWRIKRRDTEEWMRHRQLPPDLQERVHQFVQYKWLATRGVNEESILRSLPVDLRREIQRH 461
+++ K + E++M +LPPD ++R+H + ++++ + +EESIL L LR EI
Sbjct: 7 QYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQG-KMFDEESILGELSEPLREEIINF 65
Query: 462 LCIALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESST 521
C LV +P F+ D + ++ +L + G YI+REG +M FI G + S
Sbjct: 66 NCRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVV-SVL 124
Query: 522 TNGGRDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDL 581
T G ++ L G + GE L L T +VRA T ++L ++
Sbjct: 125 TKGNKE-----TKLADGSYFGEICL---------LTRGRRTASVRADTYCRLYSLSVDNF 170
Query: 582 KFVAHQF 588
V ++
Sbjct: 171 NEVLEEY 177
>pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus
Carrying The S672r Mutation
Length = 205
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 88/187 (47%), Gaps = 16/187 (8%)
Query: 402 EWRIKRRDTEEWMRHRQLPPDLQERVHQFVQYKWLATRGVNEESILRSLPVDLRREIQRH 461
+++ K + E++M +LPPD ++R+H + ++++ + +EESIL L LR EI
Sbjct: 7 QYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQG-KMFDEESILGELSEPLREEIINF 65
Query: 462 LCIALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESST 521
C LV +P F+ D + ++ +L + G YI+REG +M FI G + S
Sbjct: 66 NCRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVV-SVL 124
Query: 522 TNGGRDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDL 581
T G ++ L G + GE L L T VRA T ++L ++
Sbjct: 125 TKGNKE-----TKLADGSYFGEICL---------LTRGRRTARVRADTYCRLYSLSVDNF 170
Query: 582 KFVAHQF 588
V ++
Sbjct: 171 NEVLEEY 177
>pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp
pdb|1Q3E|B Chain B, Hcn2j 443-645 In The Presence Of Cgmp
Length = 207
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 91/194 (46%), Gaps = 16/194 (8%)
Query: 395 SMSVRIEEWRIKRRDTEEWMRHRQLPPDLQERVHQFVQYKWLATRGVNEESILRSLPVDL 454
+M +++ K + E++M +LP D ++++H + ++++ + +E+SIL L L
Sbjct: 3 AMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPL 61
Query: 455 RREIQRHLCIALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIR 514
R EI C LV +P F+ D + A+ +L + G YI+REG +M FI
Sbjct: 62 REEIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQH 121
Query: 515 GTLESSTTNGGRDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAF 574
G + S T G ++ + L G + GE L L T +VRA T +
Sbjct: 122 GVV-SVLTKGNKE-----MKLSDGSYFGEICL---------LTRGRRTASVRADTYCRLY 166
Query: 575 ALEAEDLKFVAHQF 588
+L ++ V ++
Sbjct: 167 SLSVDNFNEVLEEY 180
>pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State
pdb|3FFQ|B Chain B, Hcn2i 443-640 Apo-State
Length = 202
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 91/194 (46%), Gaps = 16/194 (8%)
Query: 395 SMSVRIEEWRIKRRDTEEWMRHRQLPPDLQERVHQFVQYKWLATRGVNEESILRSLPVDL 454
+M +++ K + E++M +LP D ++++H + ++++ + +E+SIL L L
Sbjct: 3 AMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPL 61
Query: 455 RREIQRHLCIALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIR 514
R EI C LV +P F+ D + A+ +L + G YI+REG +M FI
Sbjct: 62 REEIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQH 121
Query: 515 GTLESSTTNGGRDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAF 574
G + S T G ++ + L G + GE L L T +VRA T +
Sbjct: 122 GVV-SVLTKGNKE-----MKLSDGSYFGEICL---------LTRGRRTASVRADTYCRLY 166
Query: 575 ALEAEDLKFVAHQF 588
+L ++ V ++
Sbjct: 167 SLSVDNFNEVLEEY 180
>pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 89/187 (47%), Gaps = 16/187 (8%)
Query: 402 EWRIKRRDTEEWMRHRQLPPDLQERVHQFVQYKWLATRGVNEESILRSLPVDLRREIQRH 461
+++ K + E++M +LP D ++++H + ++++ + +E+SIL L LR EI
Sbjct: 13 QYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNF 71
Query: 462 LCIALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESST 521
C LV +P F+ D + A+ +L + G YI+REG +M FI G + S
Sbjct: 72 NCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVV-SVL 130
Query: 522 TNGGRDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDL 581
T G ++ + L G + GE L L T +VRA T ++L ++
Sbjct: 131 TKGNKE-----MKLSDGSYFGEICL---------LTRGRRTASVRADTYCRLYSLSVDNF 176
Query: 582 KFVAHQF 588
V ++
Sbjct: 177 NEVLEEY 183
>pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
pdb|2Q0A|B Chain B, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 200
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 89/187 (47%), Gaps = 16/187 (8%)
Query: 402 EWRIKRRDTEEWMRHRQLPPDLQERVHQFVQYKWLATRGVNEESILRSLPVDLRREIQRH 461
+++ K + E++M +LP D ++++H + ++++ + +E+SIL L LR EI
Sbjct: 8 QYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNF 66
Query: 462 LCIALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESST 521
C LV +P F+ D + A+ +L + G YI+REG +M FI G + S
Sbjct: 67 NCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVV-SVL 125
Query: 522 TNGGRDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDL 581
T G ++ + L G + GE L L T +VRA T ++L ++
Sbjct: 126 TKGNKE-----MKLSDGSYFGEICL---------LTRGRRTASVRADTYCRLYSLSVDNF 171
Query: 582 KFVAHQF 588
V ++
Sbjct: 172 NEVLEEY 178
>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|B Chain B, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|C Chain C, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|D Chain D, Hcn2-I 443-460 E502k In The Presence Of Camp
Length = 202
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 91/194 (46%), Gaps = 16/194 (8%)
Query: 395 SMSVRIEEWRIKRRDTEEWMRHRQLPPDLQERVHQFVQYKWLATRGVNEESILRSLPVDL 454
+M +++ K + E++M +LP D ++++H + ++++ + +E+SIL L L
Sbjct: 3 AMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPL 61
Query: 455 RREIQRHLCIALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIR 514
R +I C LV +P F+ D + A+ +L + G YI+REG +M FI
Sbjct: 62 REKIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQH 121
Query: 515 GTLESSTTNGGRDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAF 574
G + S T G ++ + L G + GE L L T +VRA T +
Sbjct: 122 GVV-SVLTKGNKE-----MKLSDGSYFGEICL---------LTRGRRTASVRADTYCRLY 166
Query: 575 ALEAEDLKFVAHQF 588
+L ++ V ++
Sbjct: 167 SLSVDNFNEVLEEY 180
>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U11|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 88/187 (47%), Gaps = 16/187 (8%)
Query: 402 EWRIKRRDTEEWMRHRQLPPDLQERVHQFVQYKWLATRGVNEESILRSLPVDLRREIQRH 461
+++ K + E++M +LPPD ++R+H + ++++ + +EESIL L LR EI
Sbjct: 13 QYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQG-KMFDEESILGELSEPLREEIINF 71
Query: 462 LCIALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESST 521
LV +P F+ D + ++ +L + G YI+REG +M FI G + S
Sbjct: 72 NXRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVV-SVL 130
Query: 522 TNGGRDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDL 581
T G ++ L G + GE L L T +VRA T ++L ++
Sbjct: 131 TKGNKE-----TKLADGSYFGEICL---------LTRGRRTASVRADTYCRLYSLSVDNF 176
Query: 582 KFVAHQF 588
V ++
Sbjct: 177 NEVLEEY 183
>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U0Z|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 86/187 (45%), Gaps = 16/187 (8%)
Query: 402 EWRIKRRDTEEWMRHRQLPPDLQERVHQFVQYKWLATRGVNEESILRSLPVDLRREIQRH 461
+++ K + E++M +LP D+++++H + ++++ + +EE+IL L LR EI
Sbjct: 13 QYQEKYKQVEQYMSFHKLPADMRQKIHDYYEHRYQG-KIFDEENILSELNDPLREEIVNF 71
Query: 462 LCIALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESST 521
C LV +P F+ D + A+ +L + G YI+REG +M FI G T
Sbjct: 72 NCRKLVATMPLFANADPNFVTAMLSKLRFEVFQPGDYIIREGAVGKKMYFIQHGVAGVIT 131
Query: 522 TNGGRDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDL 581
+ + L G + GE L L T +VRA T ++L ++
Sbjct: 132 KSS------KEMKLTDGSYFGEICL---------LTKGRRTASVRADTYCRLYSLSVDNF 176
Query: 582 KFVAHQF 588
V ++
Sbjct: 177 NEVLEEY 183
>pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
pdb|3ETQ|B Chain B, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
Length = 204
Score = 65.9 bits (159), Expect = 7e-11, Method: Composition-based stats.
Identities = 49/187 (26%), Positives = 88/187 (47%), Gaps = 16/187 (8%)
Query: 402 EWRIKRRDTEEWMRHRQLPPDLQERVHQFVQYKWLATRGVNEESILRSLPVDLRREIQRH 461
+++ K + E++M +LP D ++++H + ++++ + +E+SIL L LR EI
Sbjct: 12 QYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNF 70
Query: 462 LCIALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESST 521
LV +P F+ D + A+ +L + G YI+REG +M FI G + S
Sbjct: 71 NNRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVV-SVL 129
Query: 522 TNGGRDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDL 581
T G ++ + L G + GE S L T +VRA T ++L ++
Sbjct: 130 TKGNKE-----MKLSDGSYFGEI---------SLLTRGRRTASVRADTYSRLYSLSVDNF 175
Query: 582 KFVAHQF 588
V ++
Sbjct: 176 NEVLEEY 182
>pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q43|B Chain B, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q5O|A Chain A, Hcn2j 443-645 In The Presence Of Camp, Selenomethionine
Derivative
Length = 207
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 86/194 (44%), Gaps = 16/194 (8%)
Query: 395 SMSVRIEEWRIKRRDTEEWMRHRQLPPDLQERVHQFVQYKWLATRGVNEESILRSLPVDL 454
+M +++ K + E++ +LP D ++++H + ++++ + +E+SIL L L
Sbjct: 3 AMDSSRRQYQEKYKQVEQYXSFHKLPADFRQKIHDYYEHRYQG-KXFDEDSILGELNGPL 61
Query: 455 RREIQRHLCIALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIR 514
R EI C LV P F+ D + A +L + G YI+REG + FI
Sbjct: 62 REEIVNFNCRKLVASXPLFANADPNFVTAXLTKLKFEVFQPGDYIIREGTIGKKXYFIQH 121
Query: 515 GTLESSTTNGGRDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAF 574
G + S T G ++ L G + GE L L T +VRA T +
Sbjct: 122 GVV-SVLTKGNKE-----XKLSDGSYFGEICL---------LTRGRRTASVRADTYCRLY 166
Query: 575 ALEAEDLKFVAHQF 588
+L ++ V ++
Sbjct: 167 SLSVDNFNEVLEEY 180
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKT|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKV|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
Length = 212
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 80/169 (47%), Gaps = 7/169 (4%)
Query: 394 QSMSVRIEEWRIKRRDTEEWMRHRQLPPDLQERVHQFVQYKWLATRGVNEESILRSLPVD 453
Q M R + + +D ++++R +LP L +R+ + Q W G++ +L+ P +
Sbjct: 5 QRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDE 64
Query: 454 LRREIQRHLCIALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFII 513
LR +I HL L+ ++P F L ++ + +S G +++R+GD + + F+
Sbjct: 65 LRADIAMHLNKELL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVC 123
Query: 514 RGTLESSTTNGGRDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSST 562
G++E +D +I L GD G + LT + N+ + T
Sbjct: 124 SGSMEVL-----KDNTVLAI-LGKGDLIGSDSLTKEQVIKTNANVKALT 166
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 198
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 72/142 (50%), Gaps = 6/142 (4%)
Query: 402 EWRIKRRDTEEWMRHRQLPPDLQERVHQFVQYKWLATRGVNEESILRSLPVDLRREIQRH 461
++R K + EE+M++R+LP L+ ++ + +Y++ + +E I R + +R+++ +
Sbjct: 9 QYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRG-KMFDERHIFREVSESIRQDVANY 67
Query: 462 LCIALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESST 521
C LV VPFF D + + L + Y+++EG + M FI +G ++
Sbjct: 68 NCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM 127
Query: 522 TNGGRDGFFNSITLQPGDFCGE 543
++G + +L G + GE
Sbjct: 128 SDG-----VIATSLSDGSYFGE 144
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 22/147 (14%)
Query: 466 LVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGG 525
LV VP F ++ +L I + L + G I R G+P + M F++ G++ +T
Sbjct: 229 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP--- 285
Query: 526 RDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVA 585
N + L PG F GE L P S TV A T V +L + D + +
Sbjct: 286 -----NPVELGPGAFFGEMALISG-EPRSA--------TVSAATTVSLLSLHSADFQMLC 331
Query: 586 HQFKRLHSKKLQHAFRYYSHQWRTWAS 612
S ++ FR + + R A+
Sbjct: 332 S-----SSPEIAEIFRKTALERRGAAA 353
>pdb|3CO2|A Chain A, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|B Chain B, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|C Chain C, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|D Chain D, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
Length = 140
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 22/147 (14%)
Query: 466 LVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGG 525
LV VP F ++ +L I + L + G I R G+P + M F++ G++ +T
Sbjct: 14 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP--- 70
Query: 526 RDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVA 585
N + L PG F GE L ++ + TV A T V +L + D + +
Sbjct: 71 -----NPVELGPGAFFGEMAL---------ISGEPWSATVSAATTVSLLSLHSADFQMLC 116
Query: 586 HQFKRLHSKKLQHAFRYYSHQWRTWAS 612
S ++ FR + + R A+
Sbjct: 117 S-----SSPEIAEIFRKTALERRGAAA 138
>pdb|2K0G|A Chain A, Solution Structure Of A Bacterial Cyclic Nucleotide-
Activated K+ Channel Binding Domain In Complex With Camp
pdb|2KXL|A Chain A, Solution Structure Of A Bacterial Cyclic
Nucleotide-Activated K+ Channel Binding Domain In The
Unliganded State
Length = 142
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 17/119 (14%)
Query: 466 LVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGG 525
LV VP F ++ +L I + L + G I R G+P + M F++ G++ +T
Sbjct: 16 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP--- 72
Query: 526 RDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFV 584
N + L PG F GE L + P S TV A T V +L + D + +
Sbjct: 73 -----NPVELGPGAFFGEMALI-SGEPRSA--------TVSAATTVSLLSLHSADFQML 117
>pdb|3CLP|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
pdb|3CLP|C Chain C, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
Length = 140
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 17/119 (14%)
Query: 466 LVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGG 525
LV VP F ++ +L I + L + G I R G+P + M F++ G++ +T
Sbjct: 14 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP--- 70
Query: 526 RDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFV 584
N + L PG F GE L + P S TV A T V +L + D + +
Sbjct: 71 -----NPVELGPGAFFGEMALI-SGEPESA--------TVSAATTVSLLSLHSADFQML 115
>pdb|1U12|A Chain A, M. Loti Cyclic Nucleotide Binding Domain Mutant
pdb|1U12|B Chain B, M. Loti Cyclic Nucleotide Binding Domain Mutant
Length = 138
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 17/119 (14%)
Query: 466 LVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGG 525
LV VP F ++ +L I + L + G I R G+P + M F++ G++ +T
Sbjct: 12 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP--- 68
Query: 526 RDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFV 584
N + L PG F GE L + P S TV A T V +L + D + +
Sbjct: 69 -----NPVELGPGAFFGEMALI-SGEPRSA--------TVSAATTVSLLSLHSADFQML 113
>pdb|3CL1|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
pdb|3CL1|B Chain B, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
Length = 140
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 17/119 (14%)
Query: 466 LVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGG 525
LV VP F ++ +L I + L + G I R G+P + M F++ G++ +T
Sbjct: 14 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP--- 70
Query: 526 RDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFV 584
N + L PG F GE L + P S TV A T V +L + D + +
Sbjct: 71 -----NPVELGPGAFFGEMALI-SGEPRSA--------TVSAATTVSLLSLHSADFQML 115
>pdb|1VP6|A Chain A, M.Loti Ion Channel Cylic Nucleotide Binding Domain
pdb|1VP6|C Chain C, M.Loti Ion Channel Cylic Nucleotide Binding Domain
Length = 138
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 17/119 (14%)
Query: 466 LVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGG 525
LV VP F ++ +L I + L + G I R G+P + M F++ G++ +T
Sbjct: 12 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP--- 68
Query: 526 RDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFV 584
N + L PG F GE L + P S TV A T V +L + D + +
Sbjct: 69 -----NPVELGPGAFFGEMALI-SGEPRSA--------TVSAATTVSLLSLHSADFQML 113
>pdb|4F8A|A Chain A, Cyclic Nucleotide Binding-Homology Domain From Mouse Eag1
Potassium Channel
Length = 160
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 59/147 (40%), Gaps = 6/147 (4%)
Query: 444 ESILRSLPVDLRREIQRHLCIALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREG 503
E +L+ P D+R +I HL + + P F D L A+ + G I G
Sbjct: 6 EKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAG 65
Query: 504 DPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTR 563
+ V+ + F++ G+LE +D +I L GD G+ A S N+ + T
Sbjct: 66 ESVDSLCFVVSGSLEVI-----QDDEVVAI-LGKGDVFGDVFWKEATLAQSCANVRALTY 119
Query: 564 TVRAVTEVEAFALEAEDLKFVAHQFKR 590
V + +A E +H F R
Sbjct: 120 CDLHVIKRDALQKVLEFYTAFSHSFSR 146
>pdb|1I1R|B Chain B, Crystal Structure Of A CytokineRECEPTOR COMPLEX
Length = 181
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 15/90 (16%)
Query: 80 TCIIALLLDPLYFF---LPSVNREEACLETDGNTGFLIT-VFRTVADLFFVFNIFMKFRT 135
T I +L+P F LP++N + C G GF T + +AD FF F + KF T
Sbjct: 34 TGICKGILEPAAIFHLKLPAINDTDHC----GLIGFNETSCLKKLADGFFEFEVLFKFLT 89
Query: 136 AFVSPSSRSFGRGELVMDAREIRSRYFKTD 165
FG+ + +D E+ ++ D
Sbjct: 90 T-------EFGKSVINVDVMELLTKTLGWD 112
>pdb|1C4E|A Chain A, Gurmarin From Gymnema Sylvestre
pdb|1GUR|A Chain A, Gurmarin, A Sweet Taste-Suppressing Polypeptide, Nmr, 10
Structures
Length = 35
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 280 LCLPYFLDCSTLEEPDRLNW 299
LC+PY+LDC E ++NW
Sbjct: 9 LCIPYYLDCCEPLECKKVNW 28
>pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
pdb|3SHR|B Chain B, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
Length = 299
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 38/83 (45%)
Query: 464 IALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTN 523
+ ++ VP F + +++L + L + G YI+R+G + I +G + + +
Sbjct: 156 MEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTRED 215
Query: 524 GGRDGFFNSITLQPGDFCGEELL 546
+ TL GD+ GE+ L
Sbjct: 216 SPNEDPVFLRTLGKGDWFGEKAL 238
>pdb|1GYE|B Chain B, Structure Of Cellvibrio Cellulosa Alpha-l-arabinanase
Complexed With Arabinohexaose
Length = 315
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 252 GATWYLVAVGRQFSCW--KDRCNWENRHRALC 281
GATWYL + G + + KDR NW RA
Sbjct: 14 GATWYLFSTGPGITIYSSKDRVNWRYSDRAFA 45
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,358,353
Number of Sequences: 62578
Number of extensions: 808885
Number of successful extensions: 2041
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2005
Number of HSP's gapped (non-prelim): 26
length of query: 731
length of database: 14,973,337
effective HSP length: 106
effective length of query: 625
effective length of database: 8,340,069
effective search space: 5212543125
effective search space used: 5212543125
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)