Query 035714
Match_columns 731
No_of_seqs 440 out of 3069
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 05:41:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035714.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035714hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 2E-118 4E-123 1016.8 47.8 576 59-728 66-641 (727)
2 PLN03192 Voltage-dependent pot 100.0 1.5E-65 3.2E-70 616.9 52.2 452 57-601 48-499 (823)
3 KOG0500 Cyclic nucleotide-gate 100.0 3.6E-61 7.9E-66 510.4 36.1 424 79-598 5-433 (536)
4 KOG0501 K+-channel KCNQ [Inorg 100.0 2.2E-59 4.9E-64 499.2 25.3 461 58-595 205-665 (971)
5 KOG0499 Cyclic nucleotide-gate 100.0 9E-58 1.9E-62 489.2 29.2 426 60-593 217-646 (815)
6 PRK09392 ftrB transcriptional 99.6 9E-14 2E-18 143.7 18.1 156 464-634 6-161 (236)
7 PRK11753 DNA-binding transcrip 99.5 1.6E-12 3.4E-17 131.8 19.1 147 474-634 6-153 (211)
8 KOG3713 Voltage-gated K+ chann 99.4 7.5E-12 1.6E-16 136.2 16.0 194 111-401 239-438 (477)
9 PF00520 Ion_trans: Ion transp 99.4 2.4E-12 5.3E-17 127.8 11.5 193 116-389 1-200 (200)
10 PRK11161 fumarate/nitrate redu 99.4 1.6E-11 3.5E-16 126.8 16.9 153 467-635 15-169 (235)
11 cd00038 CAP_ED effector domain 99.4 1.1E-11 2.4E-16 111.1 13.6 112 472-594 1-113 (115)
12 PRK10402 DNA-binding transcrip 99.3 1.3E-11 2.9E-16 126.8 14.6 107 480-597 23-130 (226)
13 smart00100 cNMP Cyclic nucleot 99.3 4.3E-11 9.3E-16 107.8 15.4 115 472-595 1-116 (120)
14 COG0664 Crp cAMP-binding prote 99.3 1E-10 2.2E-15 117.7 18.2 154 468-636 3-157 (214)
15 PF00027 cNMP_binding: Cyclic 99.3 1.7E-11 3.7E-16 106.1 10.8 90 491-590 2-91 (91)
16 TIGR03697 NtcA_cyano global ni 99.2 2E-10 4.2E-15 114.7 14.7 128 496-636 1-129 (193)
17 PRK09391 fixK transcriptional 99.2 2.6E-10 5.6E-15 117.6 15.4 135 483-635 33-168 (230)
18 KOG0614 cGMP-dependent protein 99.2 4.1E-11 9E-16 129.8 7.7 125 462-595 269-394 (732)
19 PRK13918 CRP/FNR family transc 99.1 1.1E-09 2.3E-14 110.3 15.5 128 487-636 5-135 (202)
20 PLN02868 acyl-CoA thioesterase 99.1 1.2E-09 2.6E-14 122.4 14.4 113 464-589 7-119 (413)
21 KOG1113 cAMP-dependent protein 99.0 1.1E-09 2.3E-14 114.6 8.3 117 464-595 121-237 (368)
22 COG2905 Predicted signal-trans 99.0 7.7E-09 1.7E-13 114.2 14.0 117 464-594 6-122 (610)
23 KOG0614 cGMP-dependent protein 98.9 1.4E-09 3E-14 118.2 6.9 116 459-589 148-263 (732)
24 KOG1545 Voltage-gated shaker-l 98.9 3.3E-10 7.3E-15 117.6 1.3 52 342-393 395-446 (507)
25 KOG1419 Voltage-gated K+ chann 98.9 1.5E-08 3.3E-13 110.8 13.9 89 338-433 267-355 (654)
26 KOG1113 cAMP-dependent protein 98.7 3.1E-08 6.8E-13 103.8 8.9 120 459-592 234-353 (368)
27 PF07885 Ion_trans_2: Ion chan 98.7 1.3E-07 2.9E-12 80.5 10.3 55 340-394 24-78 (79)
28 KOG4390 Voltage-gated A-type K 98.4 8.4E-08 1.8E-12 100.7 2.7 180 111-393 226-413 (632)
29 KOG1420 Ca2+-activated K+ chan 98.3 8E-07 1.7E-11 97.3 6.0 137 338-482 286-427 (1103)
30 KOG2968 Predicted esterase of 98.0 8.7E-06 1.9E-10 93.9 6.6 114 479-603 499-613 (1158)
31 PRK10537 voltage-gated potassi 97.6 0.00035 7.6E-09 77.5 11.8 54 340-393 168-221 (393)
32 KOG3684 Ca2+-activated K+ chan 97.6 0.0052 1.1E-07 67.2 18.8 91 338-436 285-375 (489)
33 PF01007 IRK: Inward rectifier 97.5 0.00039 8.5E-09 75.4 9.9 59 339-397 83-143 (336)
34 PF08412 Ion_trans_N: Ion tran 97.4 0.00015 3.3E-09 60.9 3.6 35 60-94 36-70 (77)
35 KOG2968 Predicted esterase of 97.2 0.002 4.3E-08 75.2 10.6 113 483-600 110-224 (1158)
36 KOG2302 T-type voltage-gated C 96.8 0.038 8.2E-07 65.1 17.0 89 58-172 1102-1201(1956)
37 KOG1418 Tandem pore domain K+ 96.8 0.0026 5.7E-08 71.0 7.1 57 341-397 116-172 (433)
38 PRK11832 putative DNA-binding 96.5 0.058 1.3E-06 54.3 13.7 96 480-589 14-110 (207)
39 KOG3542 cAMP-regulated guanine 95.5 0.023 4.9E-07 64.4 6.0 114 461-589 277-392 (1283)
40 PF04831 Popeye: Popeye protei 95.0 0.26 5.6E-06 46.8 10.5 109 475-593 14-124 (153)
41 KOG3827 Inward rectifier K+ ch 94.9 0.11 2.4E-06 56.0 8.8 58 340-397 112-171 (400)
42 KOG4404 Tandem pore domain K+ 94.4 0.21 4.5E-06 52.8 9.1 55 340-394 186-248 (350)
43 PLN03223 Polycystin cation cha 94.2 6.9 0.00015 49.1 22.3 31 366-396 1395-1425(1634)
44 KOG4404 Tandem pore domain K+ 92.8 0.02 4.3E-07 60.2 -1.4 45 339-383 79-123 (350)
45 KOG3193 K+ channel subunit [In 91.3 0.25 5.4E-06 55.1 4.7 39 342-380 219-257 (1087)
46 KOG3542 cAMP-regulated guanine 88.2 0.69 1.5E-05 53.0 5.2 105 451-578 23-127 (1283)
47 KOG1418 Tandem pore domain K+ 85.6 0.22 4.8E-06 55.4 -0.4 48 339-386 241-296 (433)
48 KOG2301 Voltage-gated Ca2+ cha 80.2 21 0.00046 46.5 13.9 46 110-175 870-916 (1592)
49 KOG0498 K+-channel ERG and rel 75.3 52 0.0011 39.7 14.3 92 366-462 324-442 (727)
50 TIGR03037 anthran_nbaC 3-hydro 69.6 16 0.00035 35.3 7.0 74 489-580 30-105 (159)
51 PF07883 Cupin_2: Cupin domain 64.9 11 0.00024 30.4 4.3 45 491-542 3-48 (71)
52 COG4709 Predicted membrane pro 64.7 35 0.00077 33.8 8.3 72 406-479 6-81 (195)
53 PF14377 DUF4414: Domain of un 62.9 11 0.00024 34.0 4.2 45 417-461 51-105 (108)
54 PF08006 DUF1700: Protein of u 59.1 55 0.0012 32.2 8.9 56 405-462 5-64 (181)
55 PRK13264 3-hydroxyanthranilate 56.6 30 0.00066 34.0 6.3 70 494-581 42-112 (177)
56 KOG3676 Ca2+-permeable cation 55.9 2.4E+02 0.0053 34.1 14.5 73 353-426 601-680 (782)
57 PRK13290 ectC L-ectoine syntha 53.5 85 0.0018 29.1 8.6 69 489-576 38-106 (125)
58 TIGR00870 trp transient-recept 53.1 5E+02 0.011 31.6 23.6 44 364-407 586-630 (743)
59 PF08016 PKD_channel: Polycyst 51.3 1E+02 0.0022 34.7 10.6 23 152-174 230-253 (425)
60 PF00060 Lig_chan: Ligand-gate 42.7 33 0.00071 31.9 4.2 74 338-417 42-115 (148)
61 PF07697 7TMR-HDED: 7TM-HD ext 42.3 2.2E+02 0.0047 28.5 10.5 58 449-507 147-207 (222)
62 PF13314 DUF4083: Domain of un 41.5 1.1E+02 0.0024 24.3 6.0 46 367-415 5-56 (58)
63 PF05899 Cupin_3: Protein of u 39.8 54 0.0012 27.3 4.5 43 492-542 13-55 (74)
64 PF10011 DUF2254: Predicted me 36.1 1.5E+02 0.0032 32.9 8.6 60 338-397 98-157 (371)
65 smart00835 Cupin_1 Cupin. This 35.6 1.2E+02 0.0026 28.6 6.8 54 488-543 32-87 (146)
66 PLN03192 Voltage-dependent pot 35.3 9.5E+02 0.021 29.7 18.1 41 417-462 357-397 (823)
67 COG0662 {ManC} Mannose-6-phosp 33.7 1.1E+02 0.0023 28.3 6.0 48 487-541 37-85 (127)
68 KOG2301 Voltage-gated Ca2+ cha 33.0 3.3E+02 0.0071 36.2 11.8 98 113-245 474-572 (1592)
69 KOG3614 Ca2+/Mg2+-permeable ca 32.8 1.2E+03 0.027 30.2 21.7 55 369-423 1018-1074(1381)
70 COG1917 Uncharacterized conser 31.4 1.2E+02 0.0025 28.0 5.8 50 488-544 45-95 (131)
71 PF14377 DUF4414: Domain of un 31.3 1E+02 0.0022 27.8 5.2 49 418-466 8-69 (108)
72 KOG1054 Glutamate-gated AMPA-t 27.8 60 0.0013 37.6 3.6 72 342-419 597-668 (897)
73 PF12973 Cupin_7: ChrR Cupin-l 26.2 2.3E+02 0.0049 24.3 6.4 64 487-575 25-88 (91)
74 PF13623 SurA_N_2: SurA N-term 25.4 2.4E+02 0.0051 26.9 6.8 46 371-416 9-67 (145)
75 PF06249 EutQ: Ethanolamine ut 24.8 2.4E+02 0.0051 27.2 6.6 50 506-576 95-144 (152)
76 PF01484 Col_cuticle_N: Nemato 24.2 3.2E+02 0.0069 20.6 6.4 42 369-410 8-49 (53)
77 PRK04190 glucose-6-phosphate i 23.2 3.4E+02 0.0074 27.1 7.8 53 488-542 70-131 (191)
78 KOG1053 Glutamate-gated NMDA-t 23.0 1E+03 0.022 29.7 12.4 73 346-420 617-720 (1258)
79 PF02037 SAP: SAP domain; Int 22.7 1.5E+02 0.0032 20.9 3.7 26 406-431 5-35 (35)
80 PF08763 Ca_chan_IQ: Voltage g 22.6 1.4E+02 0.0029 21.4 3.3 21 609-629 9-29 (35)
81 KOG3599 Ca2+-modulated nonsele 22.2 1.5E+03 0.033 27.9 20.2 23 112-134 498-520 (798)
82 TIGR03404 bicupin_oxalic bicup 21.5 2.5E+02 0.0055 31.1 7.2 52 489-542 70-121 (367)
83 PF00612 IQ: IQ calmodulin-bin 20.7 1.4E+02 0.003 18.3 2.8 17 611-627 3-19 (21)
84 TIGR03404 bicupin_oxalic bicup 20.3 2.8E+02 0.0061 30.7 7.2 51 488-541 247-299 (367)
85 PF06052 3-HAO: 3-hydroxyanthr 20.1 1.7E+02 0.0038 28.0 4.6 37 504-543 51-87 (151)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-118 Score=1016.76 Aligned_cols=576 Identities=48% Similarity=0.827 Sum_probs=515.4
Q ss_pred cceeeCCCChhHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccCCCcchhhhhHHHHHHHHHHHHHHhhheeee
Q 035714 59 RFQILDPDSEAVSHWNYVFLATCIIALLLDPLYFFLPSVNREEACLETDGNTGFLITVFRTVADLFFVFNIFMKFRTAFV 138 (731)
Q Consensus 59 ~~~ii~P~s~~~~~W~~i~li~~~~~~~~~Pl~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~d~~f~lDi~l~f~Tay~ 138 (731)
.++||||+|+++..||.+++++|+++++++|++||||.+.+...| +|..+...++++++++|+||++||++||||||+
T Consensus 66 ~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frtayv 143 (727)
T KOG0498|consen 66 RKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAYV 143 (727)
T ss_pred cceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheEEEE
Confidence 456999999999999999999999999999999999999988889 899999999999999999999999999999999
Q ss_pred cCCCCccCCCeEeecHHHHHHHHhhhhhHHHHHhhCChhHHHHHhhccCCCCcccccchhHHHHHHHHHhhhhhhhhccc
Q 035714 139 SPSSRSFGRGELVMDAREIRSRYFKTDFVIDLAAALPLPQFVVFLIIPSMRDSKADYNNSSLALVILLQYIPRLFVIFPL 218 (731)
Q Consensus 139 ~~~s~~~~~G~lV~d~~~Ia~~Ylks~F~iDlls~lPl~~i~~~~~~~~~~~~~~~~~~~~L~li~llqyl~Rl~ri~~l 218 (731)
+++|+ ++|.||++||+||+++||++|++|++|+|||++|.++. ..........|..+.++||+||+.|++++
T Consensus 144 ~~~s~-----elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~~---~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l 215 (727)
T KOG0498|consen 144 DPSSY-----ELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVIG---STSLALESTILVGILLLQRLPRLRRVIPL 215 (727)
T ss_pred CCCCc-----eeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeeec---ccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99975 89999999999999999999999999999999998871 12222333478888889999999999999
Q ss_pred ccchhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhhhccccCCCCccccccCCCCCCcCccc
Q 035714 219 NGRIIKTTGVVAKADWAGAGYNLVLFLLSSHVLGATWYLVAVGRQFSCWKDRCNWENRHRALCLPYFLDCSTLEEPDRLN 298 (731)
Q Consensus 219 ~~~i~~~~~~~~~~~~~~~~~~lll~~l~~H~~~C~wy~ls~~~~~~cw~~~c~~~~~~~~~c~~~~l~~~~~~~~~~~~ 298 (731)
+.++++.++++.+++|+++++++++|||++||+||+||++++++...||+.+ +
T Consensus 216 ~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~---------------------------t 268 (727)
T KOG0498|consen 216 FARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKA---------------------------T 268 (727)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc---------------------------c
Confidence 9999999999999999998899999999999999999999999999999754 2
Q ss_pred cccccccccccccccccccccccccchhcccccccCchhHHHHHHHHHHHHHhhcccccCccccCchhhHHHHHHHHHHH
Q 035714 299 WRNVTTVIDDCDAVREAEIDFKFGIFAECFTDDVAASHFYRKILYCLWWGLRTLSSYAQELDTSIYVEENLLAIFICILG 378 (731)
Q Consensus 299 W~~~~~l~~~c~~~~~~~~~f~~G~~~~~~~~~v~~~~~~~~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G 378 (731)
|+..-.+...|. +..|+||+|.++ .+|++|+|||++||||+|||+.+|++.+|++|+|++|++|
T Consensus 269 w~~~l~~~~~~~-----~~~~~fg~~s~~-----------~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~G 332 (727)
T KOG0498|consen 269 WLGSLGRLLSCY-----NLSFTFGIYSLA-----------LKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFG 332 (727)
T ss_pred cccccccccccC-----cccccccchhHH-----------HHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHh
Confidence 322111011222 123779988775 4999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCCCHHHHHhhCChhhHHHH
Q 035714 379 SVLFALLIGNMQTYFQSMSVRIEEWRIKRRDTEEWMRHRQLPPDLQERVHQFVQYKWLATRGVNEESILRSLPVDLRREI 458 (731)
Q Consensus 379 ~ilfa~lIg~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~Lp~~L~~RV~~y~~y~w~~~~g~~e~~ll~~LP~~Lr~dI 458 (731)
+++||++||||++++|+++++.++||.|++|+++||+||+||++||+||++|+||+|..++|+||+++|++||++||+||
T Consensus 333 llL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI 412 (727)
T KOG0498|consen 333 LLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDI 412 (727)
T ss_pred HHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCC
Q 035714 459 QRHLCIALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPG 538 (731)
Q Consensus 459 ~~~l~~~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~G 538 (731)
++|+|.++++++|+|++||++++++||.+++++.|+|||+|++|||+.++||||++|.+++.++++| ++.++..+++|
T Consensus 413 ~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g--~~~~~~~L~~G 490 (727)
T KOG0498|consen 413 KRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGG--GFFVVAILGPG 490 (727)
T ss_pred HHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCC--ceEEEEEecCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999888 45557899999
Q ss_pred CeeechhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 035714 539 DFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKLQHAFRYYSHQWRTWASCFIQSA 618 (731)
Q Consensus 539 d~fGe~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~lq~~~r~ys~~~~~~~~~~~q~a 618 (731)
|+|||..++|++.. |+++||+|+|+|+++.|+++||++++++||++++++++|++++|+++||+|++|++|++
T Consensus 491 d~~GeEl~~~~~~~-------p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r~~aa~~iq~a 563 (727)
T KOG0498|consen 491 DFFGEELLTWCLDL-------PQTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSHLWRTWAACFIQAA 563 (727)
T ss_pred CccchHHHHHHhcC-------CCCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhhhhhhhhhhhHHHH
Confidence 99998888888851 35899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHhhhhhhhhcCCccccCCCCCCCCCCCCCCCCCCccccccccccCCCCCCchhHHHHHHHHHHHhhhhccC
Q 035714 619 WRKFRKRKMAMDLSIKESGYGYVTIPDNDSYYSFDAPAGNYADGSARKSASRKHSSSKNLGATILASKFAKNTRKVAGQK 698 (731)
Q Consensus 619 ~~r~~~R~~~~~~~~aeery~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (731)
|+++++|+....+...++.- ++ .. .+.+...+++++.+|++||+|++++++.+
T Consensus 564 ~r~~~~~~~~~~l~~~~~~~--------------~~--------~~-----~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 616 (727)
T KOG0498|consen 564 WRRHIKRKGEEELALEEEES--------------AI--------RG-----DDRGSKSLLRAGILASRFAANGRPPLHTA 616 (727)
T ss_pred HHHHHHhhccchhhhhcchh--------------hh--------cc-----ccccchhhhhcccccccccccCCCccccc
Confidence 99999998776555443211 00 00 12335688999999999999999999876
Q ss_pred CCCcccccccccCCCCCCCCCCCCCCCCcc
Q 035714 699 PQPVEEISASSSLQMPPLLKPSDPDFYVEN 728 (731)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (731)
.++ ..+...++.++||.||||+.++
T Consensus 617 ~~~-----~~~~~~~~~~~~~~~p~f~~~~ 641 (727)
T KOG0498|consen 617 ASR-----GSSDCALLLLQKPADPDFSDAE 641 (727)
T ss_pred ccc-----CccccccccCCCCCCCCccccc
Confidence 532 2235567899999999998754
No 2
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=1.5e-65 Score=616.93 Aligned_cols=452 Identities=19% Similarity=0.331 Sum_probs=375.5
Q ss_pred cccceeeCCCChhHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccCCCcchhhhhHHHHHHHHHHHHHHhhhee
Q 035714 57 CWRFQILDPDSEAVSHWNYVFLATCIIALLLDPLYFFLPSVNREEACLETDGNTGFLITVFRTVADLFFVFNIFMKFRTA 136 (731)
Q Consensus 57 ~~~~~ii~P~s~~~~~W~~i~li~~~~~~~~~Pl~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~d~~f~lDi~l~f~Ta 136 (731)
+.+++||+|.++++..||.+++++++++++++|+.++|... .....+.+++.++|++|++||+++|+||
T Consensus 48 ~~~~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~F~~~-----------~~~~~~~~~d~i~~~~F~iDi~l~f~~a 116 (823)
T PLN03192 48 GSDGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAFLNA-----------SPKRGLEIADNVVDLFFAVDIVLTFFVA 116 (823)
T ss_pred ccCCeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHeeCC-----------CCCCCeeeHHHHHHHHHHHHHHhheeEE
Confidence 34568999999999999999999999999999999776311 1122467889999999999999999999
Q ss_pred eecCCCCccCCCeEeecHHHHHHHHhhhhhHHHHHhhCChhHHHHHhhccCCCCcccccchhHHHHHHHHHhhhhhhhhc
Q 035714 137 FVSPSSRSFGRGELVMDAREIRSRYFKTDFVIDLAAALPLPQFVVFLIIPSMRDSKADYNNSSLALVILLQYIPRLFVIF 216 (731)
Q Consensus 137 y~~~~s~~~~~G~lV~d~~~Ia~~Ylks~F~iDlls~lPl~~i~~~~~~~~~~~~~~~~~~~~L~li~llqyl~Rl~ri~ 216 (731)
|+++. .|.+|.|+++|++||+|+||++|++|++|++.+.... ..... ....++++++++ +.|+.|+.
T Consensus 117 y~d~~-----~~~lV~d~~~I~~~Yl~~~f~~Dlis~lP~~~i~~~~-~~~~~------~~~~~~~l~llr-l~Rl~ri~ 183 (823)
T PLN03192 117 YIDPR-----TQLLVRDRKKIAVRYLSTWFLMDVASTIPFQALAYLI-TGTVK------LNLSYSLLGLLR-FWRLRRVK 183 (823)
T ss_pred EEeCC-----CcEEEeCHHHHHHHHHHHhHHHHHHHHhHHHHHHHHh-cCCcc------chHHHHHHHHHH-HHHHHHHH
Confidence 99985 4889999999999999999999999999998664322 11111 111223333333 44555555
Q ss_pred ccccchhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhhhccccCCCCccccccCCCCCCcCc
Q 035714 217 PLNGRIIKTTGVVAKADWAGAGYNLVLFLLSSHVLGATWYLVAVGRQFSCWKDRCNWENRHRALCLPYFLDCSTLEEPDR 296 (731)
Q Consensus 217 ~l~~~i~~~~~~~~~~~~~~~~~~lll~~l~~H~~~C~wy~ls~~~~~~cw~~~c~~~~~~~~~c~~~~l~~~~~~~~~~ 296 (731)
+++.++.+.... ...|...+..++..++++||+||+||+++... ...+
T Consensus 184 ~~~~~le~~~~~--~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~~------------------------------~~~~ 231 (823)
T PLN03192 184 QLFTRLEKDIRF--SYFWIRCARLLSVTLFLVHCAGCLYYLIADRY------------------------------PHQG 231 (823)
T ss_pred HHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------------------------------CCCC
Confidence 555555543322 12344444444555678999999999997310 1234
Q ss_pred cccccccccccccccccccccccccccchhcccccccCchhHHHHHHHHHHHHHhhcccccCccccCchhhHHHHHHHHH
Q 035714 297 LNWRNVTTVIDDCDAVREAEIDFKFGIFAECFTDDVAASHFYRKILYCLWWGLRTLSSYAQELDTSIYVEENLLAIFICI 376 (731)
Q Consensus 297 ~~W~~~~~l~~~c~~~~~~~~~f~~G~~~~~~~~~v~~~~~~~~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i 376 (731)
.+|+.... .++.+.+++.+|++|+||+++|||||||||++|.|..|++|+|++|+
T Consensus 232 ~~Wi~~~~-------------------------~~~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml 286 (823)
T PLN03192 232 KTWIGAVI-------------------------PNFRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYML 286 (823)
T ss_pred CchHHHhh-------------------------hccccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHH
Confidence 57865310 12335688999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCCCHHHHHhhCChhhHH
Q 035714 377 LGSVLFALLIGNMQTYFQSMSVRIEEWRIKRRDTEEWMRHRQLPPDLQERVHQFVQYKWLATRGVNEESILRSLPVDLRR 456 (731)
Q Consensus 377 ~G~ilfa~lIg~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~Lp~~L~~RV~~y~~y~w~~~~g~~e~~ll~~LP~~Lr~ 456 (731)
+|+++||++||+|++++.+.+.+.++|+++++.+++||+++++|++||+||++|++|+|.. .+.+++++++.||++||.
T Consensus 287 ~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~~~~-~~~~~~~~l~~Lp~~Lr~ 365 (823)
T PLN03192 287 FNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLRFKA-ESLNQQQLIDQLPKSICK 365 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh-ccccHHHHHHHcCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999985 458899999999999999
Q ss_pred HHHHHHHHHHHhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeC
Q 035714 457 EIQRHLCIALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQ 536 (731)
Q Consensus 457 dI~~~l~~~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~ 536 (731)
+|..+++.++++++++|++++++++.+++..++++.|+|||.|+.+||.++++|||.+|.|+++..++|++.++ ..++
T Consensus 366 ~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~~~~~e~~l--~~l~ 443 (823)
T PLN03192 366 SICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDSEGEKERVV--GTLG 443 (823)
T ss_pred HHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEecCCcceee--EEcc
Confidence 99999999999999999999999999999999999999999999999999999999999999998777777664 4899
Q ss_pred CCCeeechhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 035714 537 PGDFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKLQHAFR 601 (731)
Q Consensus 537 ~Gd~fGe~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~lq~~~r 601 (731)
+|++|||.+++ ... +++++++|.++|+++.|++++|.++++++|+.....++...+
T Consensus 444 ~Gd~FGE~~~l---~~~------p~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~~i~~~~l~ 499 (823)
T PLN03192 444 CGDIFGEVGAL---CCR------PQSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNVVILKNFLQ 499 (823)
T ss_pred CCCEecchHHh---cCC------CCCCeEEEcccEEEEEEEHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999773 222 588999999999999999999999999999988877666554
No 3
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=3.6e-61 Score=510.37 Aligned_cols=424 Identities=23% Similarity=0.375 Sum_probs=352.6
Q ss_pred HHHHHHHHHhhhhccccccccccccccccCCCcchhhhhHHHHHHHHHHHHHHhhheeeecCCCCccCCCeEeecHHHHH
Q 035714 79 ATCIIALLLDPLYFFLPSVNREEACLETDGNTGFLITVFRTVADLFFVFNIFMKFRTAFVSPSSRSFGRGELVMDAREIR 158 (731)
Q Consensus 79 i~~~~~~~~~Pl~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~d~~f~lDi~l~f~Tay~~~~s~~~~~G~lV~d~~~Ia 158 (731)
+.++|++++.+..+.|+.++. .....|..+++++|++|++||++++||||+. .|.+|.|..+.+
T Consensus 5 ~~vLYN~~~li~r~~F~di~~---------~y~~~wl~ld~~~D~vyllDi~v~~R~gyle-------qGllV~~~~Kl~ 68 (536)
T KOG0500|consen 5 LGVLYNMIVLIVRAAFDDIQS---------SYLENWLPLDYLFDFVYLLDIIVRSRTGYLE-------QGLLVKDTSKLR 68 (536)
T ss_pred EehHHHHHHHHHHHHHHHHhH---------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHh-------cCeeehhhHHHH
Confidence 457888888888877776642 2234578889999999999999999999995 599999999999
Q ss_pred HHHhhh-hhHHHHHhhCChhHHHHHhhccCCCCcccccchhHHHHHHHHHhhhhhhhhcccccchhhccchhhhhhHHHH
Q 035714 159 SRYFKT-DFVIDLAAALPLPQFVVFLIIPSMRDSKADYNNSSLALVILLQYIPRLFVIFPLNGRIIKTTGVVAKADWAGA 237 (731)
Q Consensus 159 ~~Ylks-~F~iDlls~lPl~~i~~~~~~~~~~~~~~~~~~~~L~li~llqyl~Rl~ri~~l~~~i~~~~~~~~~~~~~~~ 237 (731)
+||++| .|.+|++|++|++++.+|.. .....|+.||+ |+.|++..+.+-+..+.+- .+..
T Consensus 69 ~hY~~s~~f~lD~l~liP~D~l~~~~~-----------~~~~~r~nRll----k~yRl~~F~~rTetrT~~P----n~fr 129 (536)
T KOG0500|consen 69 KHYVHSTQFKLDVLSLIPLDLLLFKDG-----------SASLERLNRLL----KIYRLFEFFDRTETRTTYP----NAFR 129 (536)
T ss_pred HHHHHhhhhhhhhhhhcchhHHhhcCC-----------cchHHHHHHHH----HHHHHHHHHHHhccccCCc----hHHH
Confidence 999998 99999999999998876532 11233444432 3334433333333333321 1223
Q ss_pred HHHHHHH-HHHHHHHHHHHHhhhhhcchhhhhhhhhhccccCCCCccccccCCCCCCcCcccccccc---cccccccccc
Q 035714 238 GYNLVLF-LLSSHVLGATWYLVAVGRQFSCWKDRCNWENRHRALCLPYFLDCSTLEEPDRLNWRNVT---TVIDDCDAVR 313 (731)
Q Consensus 238 ~~~lll~-~l~~H~~~C~wy~ls~~~~~~cw~~~c~~~~~~~~~c~~~~l~~~~~~~~~~~~W~~~~---~l~~~c~~~~ 313 (731)
+.+|+.| +++.||.||++|++|... +.+.++|.... .....|
T Consensus 130 i~~lv~~~~ilfHWNaClYf~iS~~~------------------------------g~~~d~wvY~~i~d~~~~~c---- 175 (536)
T KOG0500|consen 130 ISKLVHYCLILFHWNACLYFLISKAI------------------------------GFTTDDWVYPKINDPEFATC---- 175 (536)
T ss_pred HHHHHHHHHHHHHHhhHHHHhhhHhc------------------------------CccccccccCCccCcccccc----
Confidence 5566665 578999999999998521 23455686532 111112
Q ss_pred ccccccccccchhcccccccCchhHHHHHHHHHHHHHhhcccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035714 314 EAEIDFKFGIFAECFTDDVAASHFYRKILYCLWWGLRTLSSYAQELDTSIYVEENLLAIFICILGSVLFALLIGNMQTYF 393 (731)
Q Consensus 314 ~~~~~f~~G~~~~~~~~~v~~~~~~~~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~ilfa~lIg~~~~~l 393 (731)
..+++..+|++|+||+..||||+|. ..+|.+..|.+|.|+=.++|+++||.++|++++++
T Consensus 176 -------------------~~~n~~ReY~~S~YWStLTlTTiGe-~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmV 235 (536)
T KOG0500|consen 176 -------------------DAGNLTREYLYSLYWSTLTLTTIGE-QPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMV 235 (536)
T ss_pred -------------------chhHHHHHHHHHHHHHhhhhhhccC-CCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHH
Confidence 1257899999999999999999998 56788899999999999999999999999999999
Q ss_pred HhccHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCCCHHHHHhhCChhhHHHHHHHHHHHHHhcCCcC
Q 035714 394 QSMSVRIEEWRIKRRDTEEWMRHRQLPPDLQERVHQFVQYKWLATRGVNEESILRSLPVDLRREIQRHLCIALVRRVPFF 473 (731)
Q Consensus 394 ~~~~~~~~e~~~k~~~~~~~m~~~~Lp~~L~~RV~~y~~y~w~~~~g~~e~~ll~~LP~~Lr~dI~~~l~~~ll~~vp~F 473 (731)
.++++...||+.+++.+++||++|++|..+|.||.+||.|.|.+.+-.||+++++.||+.|+.+|+.+++.+.|+++++|
T Consensus 236 tnmna~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF 315 (536)
T KOG0500|consen 236 TNMNAARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIF 315 (536)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeeechhHhhhcCCC
Q 035714 474 SQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCGEELLTWALTPN 553 (731)
Q Consensus 474 ~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~ll~al~~~ 553 (731)
..+++.++.+++.++++..|.|||+|+++||.+.+||+|.+|.+++...+++.. ...+++|++|||.+++ .+.++
T Consensus 316 ~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~dDg~t~----~~~L~~G~~FGEisIl-ni~g~ 390 (536)
T KOG0500|consen 316 QDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVADDGVTV----FVTLKAGSVFGEISIL-NIKGN 390 (536)
T ss_pred HhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEecCCcEE----EEEecCCceeeeeEEE-EEcCc
Confidence 999999999999999999999999999999999999999999999998766543 4589999999999985 35543
Q ss_pred CCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHHHH
Q 035714 554 STLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKLQH 598 (731)
Q Consensus 554 ~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~lq~ 598 (731)
. +..+|+++|+++..+++++|+++|+-+++++||+-...++++
T Consensus 391 ~--~gNRRtanvrSvGYSDlfvLskdDl~~aL~eYP~a~~~L~~k 433 (536)
T KOG0500|consen 391 K--NGNRRTANVRSVGYSDLFVLSKDDLWEALSEYPDARKRLEEK 433 (536)
T ss_pred c--cCCcceeeeeeeccceeeEeeHHHHHHHHHhCCHHHHHHHHH
Confidence 2 445799999999999999999999999999999887766533
No 4
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-59 Score=499.24 Aligned_cols=461 Identities=21% Similarity=0.335 Sum_probs=371.6
Q ss_pred ccceeeCCCChhHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccCCCcchhhhhHHHHHHHHHHHHHHhhheee
Q 035714 58 WRFQILDPDSEAVSHWNYVFLATCIIALLLDPLYFFLPSVNREEACLETDGNTGFLITVFRTVADLFFVFNIFMKFRTAF 137 (731)
Q Consensus 58 ~~~~ii~P~s~~~~~W~~i~li~~~~~~~~~Pl~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~d~~f~lDi~l~f~Tay 137 (731)
...-||--.+.|+-+||.+++++.+|+.+++|+-.+|-. .......|.+++.++|++|++||++||+|.|
T Consensus 205 TpPHIiLHYcaFKt~WDWvIL~LTFYTAimVPyNvaFKn----------k~~~~vs~lvvDSiVDVIF~vDIvLNFHTTF 274 (971)
T KOG0501|consen 205 TPPHIILHYCAFKTIWDWVILILTFYTAIMVPYNVAFKN----------KQRNNVSWLVVDSIVDVIFFVDIVLNFHTTF 274 (971)
T ss_pred CCCeEEEeeehhhhHHHHHHHHHHHHHHheeeeeeeecc----------cccCceeEEEecchhhhhhhhhhhhhcceee
Confidence 334588889999999999999999999999999766531 2223456788999999999999999999999
Q ss_pred ecCCCCccCCCeEeecHHHHHHHHhhhhhHHHHHhhCChhHHHHHhhccCCCCcccccchhHHHHHHHHHhhhhhhhhcc
Q 035714 138 VSPSSRSFGRGELVMDAREIRSRYFKTDFVIDLAAALPLPQFVVFLIIPSMRDSKADYNNSSLALVILLQYIPRLFVIFP 217 (731)
Q Consensus 138 ~~~~s~~~~~G~lV~d~~~Ia~~Ylks~F~iDlls~lPl~~i~~~~~~~~~~~~~~~~~~~~L~li~llqyl~Rl~ri~~ 217 (731)
+.|- ||+|.||+.|+.+|+|+||+||++|+||++.+..+--.. .+-.+ ....|+ +.||+|+-+
T Consensus 275 VGPg------GEVvsdPkvIRmNYlKsWFvIDLLSCLPYDi~naF~~~d--egI~S--LFSaLK-------VVRLLRLGR 337 (971)
T KOG0501|consen 275 VGPG------GEVVSDPKVIRMNYLKSWFVIDLLSCLPYDIFNAFERDD--EGIGS--LFSALK-------VVRLLRLGR 337 (971)
T ss_pred ecCC------CceecChhHHhHHHHHHHHHHHHHhcccHHHHHHhhccc--ccHHH--HHHHHH-------HHHHHHHHH
Confidence 9996 999999999999999999999999999999664332111 11111 122333 555566655
Q ss_pred cccchhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhhhccccCCCCccccccCCCCCCcCcc
Q 035714 218 LNGRIIKTTGVVAKADWAGAGYNLVLFLLSSHVLGATWYLVAVGRQFSCWKDRCNWENRHRALCLPYFLDCSTLEEPDRL 297 (731)
Q Consensus 218 l~~~i~~~~~~~~~~~~~~~~~~lll~~l~~H~~~C~wy~ls~~~~~~cw~~~c~~~~~~~~~c~~~~l~~~~~~~~~~~ 297 (731)
+.+++.+...+ ..+-.+..++.|+|++||+||+||.++..+-. .+ ..+....+
T Consensus 338 VaRKLD~YlEY----GAA~LvLLlC~y~lvAHWlACiWysIGd~ev~--------~~---------------~~n~i~~d 390 (971)
T KOG0501|consen 338 VARKLDHYLEY----GAAVLVLLLCVYGLVAHWLACIWYSIGDYEVR--------DE---------------MDNTIQPD 390 (971)
T ss_pred HHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHhheeccchhee--------cc---------------cccccccc
Confidence 56666554433 11222344456899999999999999842100 00 01112356
Q ss_pred ccccccccccccccccccccccccccchhcccccccCchhHHHHHHHHHHHHHhhcccccCccccCchhhHHHHHHHHHH
Q 035714 298 NWRNVTTVIDDCDAVREAEIDFKFGIFAECFTDDVAASHFYRKILYCLWWGLRTLSSYAQELDTSIYVEENLLAIFICIL 377 (731)
Q Consensus 298 ~W~~~~~l~~~c~~~~~~~~~f~~G~~~~~~~~~v~~~~~~~~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~ 377 (731)
+|+-.-. +...++|+|-.- .-..-+-..+--..|+.|+|+..+.|||+|+|.+.|.++.|++|++.+|++
T Consensus 391 sWL~kLa--------~~~~tpY~~~~s--~~~~~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii 460 (971)
T KOG0501|consen 391 SWLWKLA--------NDIGTPYNYNLS--NKGTLVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMII 460 (971)
T ss_pred hHHHHHH--------hhcCCCceeccC--CCceeecCCcccceehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHH
Confidence 7753211 112234444210 000011235667789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCCCHHHHHhhCChhhHHH
Q 035714 378 GSVLFALLIGNMQTYFQSMSVRIEEWRIKRRDTEEWMRHRQLPPDLQERVHQFVQYKWLATRGVNEESILRSLPVDLRRE 457 (731)
Q Consensus 378 G~ilfa~lIg~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~Lp~~L~~RV~~y~~y~w~~~~g~~e~~ll~~LP~~Lr~d 457 (731)
|.++||-++|+|.+++|.+++....|.+.++.+.+||+-.++|..|.+||..|.--.|..++|+|.+++|...|+++|.|
T Consensus 461 ~aLLYAtIFG~vTTI~QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkAD 540 (971)
T KOG0501|consen 461 GALLYATIFGHVTTIIQQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKAD 540 (971)
T ss_pred HHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCC
Q 035714 458 IQRHLCIALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQP 537 (731)
Q Consensus 458 I~~~l~~~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~ 537 (731)
|+.|+.++....+|.|+-.++..+++++..++..+..||+.|++.|+..+.++||.+|.+++...++- +++++.
T Consensus 541 ICVHLNRKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDDEV------VAILGK 614 (971)
T KOG0501|consen 541 ICVHLNRKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDDEV------VAILGK 614 (971)
T ss_pred eeeecchhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecCcE------EEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999876542 679999
Q ss_pred CCeeechhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHH
Q 035714 538 GDFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKK 595 (731)
Q Consensus 538 Gd~fGe~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~ 595 (731)
||.||+.-. - .. .+..+-++|+|++.|.+..|.++.+.++++-|..+++..
T Consensus 615 GDVFGD~FW--K---~~--t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtAFanSF 665 (971)
T KOG0501|consen 615 GDVFGDEFW--K---EN--TLGQSAANVRALTYCDLHMIKRDKLLKVLDFYTAFANSF 665 (971)
T ss_pred CccchhHHh--h---hh--hhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHh
Confidence 999999843 1 11 223478999999999999999999999999998887644
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=9e-58 Score=489.23 Aligned_cols=426 Identities=20% Similarity=0.362 Sum_probs=359.7
Q ss_pred ceeeCCCC-hhHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccCCCcchhhhhHHHHHHHHHHHH-HHhhheee
Q 035714 60 FQILDPDS-EAVSHWNYVFLATCIIALLLDPLYFFLPSVNREEACLETDGNTGFLITVFRTVADLFFVFNI-FMKFRTAF 137 (731)
Q Consensus 60 ~~ii~P~s-~~~~~W~~i~li~~~~~~~~~Pl~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~d~~f~lDi-~l~f~Tay 137 (731)
...|||++ ++...|-.++.++..++++++|+...||.+...+ ...|.+.++++|++|++|| +++=|.-|
T Consensus 217 ~~sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQT~dN---------~~~Wli~Dy~cDiIYllDmlf~q~Rl~f 287 (815)
T KOG0499|consen 217 PNSIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQTADN---------IHYWLIADYICDIIYLLDMLFIQPRLQF 287 (815)
T ss_pred CcccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCcccccc---------chhhhhHHHHhhHHHHHHHhhhhhhhee
Confidence 36899998 9999999999999999999999999999886433 2357888999999999999 55788888
Q ss_pred ecCCCCccCCCeEeecHHHHHHHHhhh-hhHHHHHhhCChhHHHHHhhccCCCCcccccchhHHHHHHHHHhhhhhhhhc
Q 035714 138 VSPSSRSFGRGELVMDAREIRSRYFKT-DFVIDLAAALPLPQFVVFLIIPSMRDSKADYNNSSLALVILLQYIPRLFVIF 216 (731)
Q Consensus 138 ~~~~s~~~~~G~lV~d~~~Ia~~Ylks-~F~iDlls~lPl~~i~~~~~~~~~~~~~~~~~~~~L~li~llqyl~Rl~ri~ 216 (731)
+. .|.+|.|.+...+||+++ .|-+|++|+||++++++.+. .+.++|+-|++| +.-++-++
T Consensus 288 vr-------gG~~ik~kndtrk~Yl~sr~FklDllsiLPldllY~~~G-----------~~p~wR~~R~lK-~~sF~e~~ 348 (815)
T KOG0499|consen 288 VR-------GGDIIKDKNDTRKHYLTSRKFKLDLLSILPLDLLYLFFG-----------FNPMWRANRMLK-YTSFFEFN 348 (815)
T ss_pred ee-------CceEEEechHHHHHHHHhhhhhhhHHhhhhHHHHHHHhc-----------cchhhhhhhHHH-HHHHHHHH
Confidence 85 499999999999999999 99999999999998876432 234455444444 22333322
Q ss_pred ccccchhhccchhhhhhHHHHHHHHHHH-HHHHHHHHHHHHhhhhhcchhhhhhhhhhccccCCCCccccccCCCCCCcC
Q 035714 217 PLNGRIIKTTGVVAKADWAGAGYNLVLF-LLSSHVLGATWYLVAVGRQFSCWKDRCNWENRHRALCLPYFLDCSTLEEPD 295 (731)
Q Consensus 217 ~l~~~i~~~~~~~~~~~~~~~~~~lll~-~l~~H~~~C~wy~ls~~~~~~cw~~~c~~~~~~~~~c~~~~l~~~~~~~~~ 295 (731)
.+ +.+ ++ ..+++..+...+.| +.++|+.+|++|..|.. ++.+
T Consensus 349 ~~---Le~---i~-s~~y~~RV~rT~~YmlyilHinacvYY~~Say------------------------------qglG 391 (815)
T KOG0499|consen 349 HH---LES---IM-SKAYIYRVIRTTGYLLYILHINACVYYWASAY------------------------------QGLG 391 (815)
T ss_pred HH---HHH---Hh-cchhhhhhHHHHHHHHHHHhhhHHHHHHHHhh------------------------------cccc
Confidence 22 221 11 12233233333334 35679999999988732 2245
Q ss_pred ccccccccccccccccccccccccccccchhcccccccCchhHHHHHHHHHHHHHhhcccccCccccCchhhHHHHHHHH
Q 035714 296 RLNWRNVTTVIDDCDAVREAEIDFKFGIFAECFTDDVAASHFYRKILYCLWWGLRTLSSYAQELDTSIYVEENLLAIFIC 375 (731)
Q Consensus 296 ~~~W~~~~~l~~~c~~~~~~~~~f~~G~~~~~~~~~v~~~~~~~~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~ 375 (731)
.+.|+.+ +-...|+.|+||+..|++|+| |+..|++..|++|..+-.
T Consensus 392 ~~rWVyd---------------------------------g~Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w 437 (815)
T KOG0499|consen 392 TTRWVYD---------------------------------GEGNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNW 437 (815)
T ss_pred cceeEEc---------------------------------CCCCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHH
Confidence 6678653 124579999999999999999 577889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCCCHHHHHhhCChhhH
Q 035714 376 ILGSVLFALLIGNMQTYFQSMSVRIEEWRIKRRDTEEWMRHRQLPPDLQERVHQFVQYKWLATRGVNEESILRSLPVDLR 455 (731)
Q Consensus 376 i~G~ilfa~lIg~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~Lp~~L~~RV~~y~~y~w~~~~g~~e~~ll~~LP~~Lr 455 (731)
+.|++.||.+||.|-.++...+...++||..++++-.||+..+||.+.|.||+.+|+|.|..++..||.+++..||..|+
T Consensus 438 ~mGVFvFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~~LP~klq 517 (815)
T KOG0499|consen 438 FMGVFVFSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLKTLPTKLQ 517 (815)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHHhcchhhe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEee
Q 035714 456 REIQRHLCIALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITL 535 (731)
Q Consensus 456 ~dI~~~l~~~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l 535 (731)
.|++..++...+.+|.+|++++.+.+..++.+++.+.|.||++|+++||.+.+||+|..|.|++..-.+|... +..|
T Consensus 518 ~dlAi~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlGGp~~~~V---l~tL 594 (815)
T KOG0499|consen 518 LDLAIDVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLGGPDGTKV---LVTL 594 (815)
T ss_pred eeeeEEeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEecCCCCCEE---EEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999976666543 5699
Q ss_pred CCCCeeechhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHH
Q 035714 536 QPGDFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHS 593 (731)
Q Consensus 536 ~~Gd~fGe~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~ 593 (731)
.+|+.|||++++ |.-+.- +|+++|+|.+.|.+++|+++|+.+++..||+-..
T Consensus 595 ~~GsVFGEISLL-aigG~n-----RRTAnV~a~Gf~nLfvL~KkdLneil~~YP~sq~ 646 (815)
T KOG0499|consen 595 KAGSVFGEISLL-AIGGGN-----RRTANVVAHGFANLFVLDKKDLNEILVHYPDSQR 646 (815)
T ss_pred cccceeeeeeee-eecCCC-----ccchhhhhcccceeeEecHhHHHHHHHhCccHHH
Confidence 999999999985 444333 7999999999999999999999999999995433
No 6
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.56 E-value=9e-14 Score=143.68 Aligned_cols=156 Identities=15% Similarity=0.209 Sum_probs=124.9
Q ss_pred HHHHhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeeec
Q 035714 464 IALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCGE 543 (731)
Q Consensus 464 ~~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 543 (731)
.+.++.+++|..++++.++.++...+.+.|++|+.|+++||+++.+|+|.+|.++++...+|++.+ +..+.+|++||+
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~--i~~~~~g~~~g~ 83 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETT--LAILRPVSTFIL 83 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEE--EEEeCCCchhhh
Confidence 467899999999999999999999999999999999999999999999999999999887777665 459999999999
Q ss_pred hhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 035714 544 ELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKLQHAFRYYSHQWRTWASCFIQSAWRKFR 623 (731)
Q Consensus 544 ~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~lq~~~r~ys~~~~~~~~~~~q~a~~r~~ 623 (731)
.++ +..+ ++.++++|.++|+++.+++++|.+++.++|.+...+++...+. .+.....+.........
T Consensus 84 ~~~---~~~~------~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~~----~~~~~~~~~~~~~~~~~ 150 (236)
T PRK09392 84 AAV---VLDA------PYLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAGC----YRGLVKSLKNQKLRSSA 150 (236)
T ss_pred HHH---hCCC------CCceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH----HHHHHHHHHHhhcCCHH
Confidence 865 3333 4889999999999999999999999999999988665444332 22233333334444555
Q ss_pred HhHHHhhhhhh
Q 035714 624 KRKMAMDLSIK 634 (731)
Q Consensus 624 ~R~~~~~~~~a 634 (731)
.|....++..+
T Consensus 151 ~Rla~~Ll~~~ 161 (236)
T PRK09392 151 ERLANYLLKQS 161 (236)
T ss_pred HHHHHHHHHhc
Confidence 55555555443
No 7
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.49 E-value=1.6e-12 Score=131.82 Aligned_cols=147 Identities=14% Similarity=0.163 Sum_probs=112.1
Q ss_pred CcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceEEEEEeeCCCCeeechhHhhhcCC
Q 035714 474 SQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTN-GGRDGFFNSITLQPGDFCGEELLTWALTP 552 (731)
Q Consensus 474 ~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~ll~al~~ 552 (731)
+.++++.++.++..++.+.|++|++|+++||+++.+|||.+|.++++..+ +|++.. +..+.+|++||+..+ +.+
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~---~~~ 80 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGL---FEE 80 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEEeehhh---ccC
Confidence 46899999999999999999999999999999999999999999999765 567666 458999999999875 332
Q ss_pred CCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhHHHhhhh
Q 035714 553 NSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKLQHAFRYYSHQWRTWASCFIQSAWRKFRKRKMAMDLS 632 (731)
Q Consensus 553 ~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~lq~~~r~ys~~~~~~~~~~~q~a~~r~~~R~~~~~~~ 632 (731)
.. ++..+++|.++|+++.+++++|.+++.++|++...+++... +..+.....+.........+|....++.
T Consensus 81 ~~-----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~Rl~~~L~~ 151 (211)
T PRK11753 81 GQ-----ERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQMA----RRLQNTSRKVGDLAFLDVTGRIAQTLLD 151 (211)
T ss_pred CC-----CceEEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHHH----HHHHHHHHHHHHHHhcChhhHHHHHHHH
Confidence 22 47889999999999999999999999999998875543332 2222222222233344444555554444
Q ss_pred hh
Q 035714 633 IK 634 (731)
Q Consensus 633 ~a 634 (731)
.+
T Consensus 152 l~ 153 (211)
T PRK11753 152 LA 153 (211)
T ss_pred HH
Confidence 44
No 8
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.38 E-value=7.5e-12 Score=136.19 Aligned_cols=194 Identities=20% Similarity=0.306 Sum_probs=119.3
Q ss_pred cchhhhhHHHHHHHHHHHHHHhhheeeecCCCCccCCCeEeecHHHHHHHHhhh-hhHHHHHhhCChhHHHHHhhccCCC
Q 035714 111 GFLITVFRTVADLFFVFNIFMKFRTAFVSPSSRSFGRGELVMDAREIRSRYFKT-DFVIDLAAALPLPQFVVFLIIPSMR 189 (731)
Q Consensus 111 ~~~~~~~~~i~d~~f~lDi~l~f~Tay~~~~s~~~~~G~lV~d~~~Ia~~Ylks-~F~iDlls~lPl~~i~~~~~~~~~~ 189 (731)
...+..++.++-+.|-+..+++|-.+ |+ ..+++|+ -=+||++|++||+.=+........+
T Consensus 239 ~p~l~~vE~vCi~WFT~E~llR~~~~---P~----------------k~~F~k~pLNIIDllAIlPFYielll~~~~~~~ 299 (477)
T KOG3713|consen 239 HPILTYVETVCIAWFTFEYLLRFLVA---PN----------------KLEFFKSPLNIIDLLAILPFYLELLLTLFGGES 299 (477)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHcC---ch----------------HHHHHhCcchHHHHHHHHHHHHHHHHHHhccch
Confidence 34578899999999999999998753 32 2456666 4599999999987543322222111
Q ss_pred CcccccchhHHHHHHHHHhhhhhhhhcccccchhhccchhh--hhhH--HHHHHHHHHH-HHHHHHHHHHHHhhhhhcch
Q 035714 190 DSKADYNNSSLALVILLQYIPRLFVIFPLNGRIIKTTGVVA--KADW--AGAGYNLVLF-LLSSHVLGATWYLVAVGRQF 264 (731)
Q Consensus 190 ~~~~~~~~~~L~li~llqyl~Rl~ri~~l~~~i~~~~~~~~--~~~~--~~~~~~lll~-~l~~H~~~C~wy~ls~~~~~ 264 (731)
..+.-+...++|++| +.|++|+++|.+. .+|.-+ .|.. ..-+..|++| ++.+-+++.+-|++-.+.
T Consensus 300 ~~~l~~~~~vvrvlR----~lRI~RI~KLaRh---S~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek~~-- 370 (477)
T KOG3713|consen 300 LKELENAGLVVRVLR----VLRILRIFKLARH---STGLRTLGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEKDE-- 370 (477)
T ss_pred HHHHhhhhhhHHHHH----HHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--
Confidence 111112223344333 4444444444332 222211 1111 1112233334 456777888888763110
Q ss_pred hhhhhhhhhccccCCCCccccccCCCCCCcCccccccccccccccccccccccccccccchhcccccccCchhHHHHHHH
Q 035714 265 SCWKDRCNWENRHRALCLPYFLDCSTLEEPDRLNWRNVTTVIDDCDAVREAEIDFKFGIFAECFTDDVAASHFYRKILYC 344 (731)
Q Consensus 265 ~cw~~~c~~~~~~~~~c~~~~l~~~~~~~~~~~~W~~~~~l~~~c~~~~~~~~~f~~G~~~~~~~~~v~~~~~~~~Y~~s 344 (731)
++ ++ +..--.|
T Consensus 371 -------------------------------------------------~~-~~-------------------FtSIPa~ 381 (477)
T KOG3713|consen 371 -------------------------------------------------PD-TK-------------------FTSIPAG 381 (477)
T ss_pred -------------------------------------------------CC-CC-------------------Cccccch
Confidence 00 00 1222368
Q ss_pred HHHHHHhhcccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Q 035714 345 LWWGLRTLSSYAQELDTSIYVEENLLAIFICILGSVLFALLIGNMQTYFQSMSVRIE 401 (731)
Q Consensus 345 lyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~ilfa~lIg~~~~~l~~~~~~~~ 401 (731)
+||++.|||||||||.+|.|...++++..++++|+++.|+-|..|-+-+.....+.+
T Consensus 382 ~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~k 438 (477)
T KOG3713|consen 382 FWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSELK 438 (477)
T ss_pred hheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999987776666654444333
No 9
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.38 E-value=2.4e-12 Score=127.77 Aligned_cols=193 Identities=19% Similarity=0.304 Sum_probs=122.8
Q ss_pred hhHHHHHHHHHHHHHHhhheeeecCCCCccCCCeEeecHHHHHHHHhhh-hhHHHHHhhCChhHHHHHhhccCCCCcccc
Q 035714 116 VFRTVADLFFVFNIFMKFRTAFVSPSSRSFGRGELVMDAREIRSRYFKT-DFVIDLAAALPLPQFVVFLIIPSMRDSKAD 194 (731)
Q Consensus 116 ~~~~i~d~~f~lDi~l~f~Tay~~~~s~~~~~G~lV~d~~~Ia~~Ylks-~F~iDlls~lPl~~i~~~~~~~~~~~~~~~ 194 (731)
+++.+++++|++|+++++.+... . +++|+++ |.++|+++++|....+.....+ ..+.
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~-----------~-------~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~- 58 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGF-----------K-------RRRYFRSWWNWFDFISVIPSIVSVILRSYG---SASA- 58 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCC-----------G--------GCCCCSHHHHHHHHHHHHHCCHHCCHCSS-----HH-
T ss_pred CChHHHHHHHHHHHHHHHHHhcc-----------H-------HHHHhcChhhcccccccccccccccccccc---cccc-
Confidence 36789999999999999997543 1 6789998 7789999999986544322111 1100
Q ss_pred cchhHHHHHHHHHhhhhhhhhcccccchhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhhhc
Q 035714 195 YNNSSLALVILLQYIPRLFVIFPLNGRIIKTTGVVAKADWAGAGYNLVLFLLSSHVLGATWYLVAVGRQFSCWKDRCNWE 274 (731)
Q Consensus 195 ~~~~~L~li~llqyl~Rl~ri~~l~~~i~~~~~~~~~~~~~~~~~~lll~~l~~H~~~C~wy~ls~~~~~~cw~~~c~~~ 274 (731)
...+++.++++ +.|++|+.+..+.+.+....+.. ........++++++..|+.+|+++.+.......|+.
T Consensus 59 --~~~~~~~~~l~-~~R~l~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~------ 128 (200)
T PF00520_consen 59 --QSLLRIFRLLR-LLRLLRLLRRFRSLRRLLRALIR-SFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCD------ 128 (200)
T ss_dssp --CHCHHHHHHHH-HHHHHHHHHTTTSHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-----------
T ss_pred --cceEEEEEeec-ccccccccccccccccccccccc-ccccccccccccccccccccchhheecccccccccc------
Confidence 13344444444 44555555555555444333221 112223334556778899999999887443222210
Q ss_pred cccCCCCccccccCCCCCCcCccccccccccccccccccccccccccccchhcccccccCchhHHHHHHHHHHHHHhhcc
Q 035714 275 NRHRALCLPYFLDCSTLEEPDRLNWRNVTTVIDDCDAVREAEIDFKFGIFAECFTDDVAASHFYRKILYCLWWGLRTLSS 354 (731)
Q Consensus 275 ~~~~~~c~~~~l~~~~~~~~~~~~W~~~~~l~~~c~~~~~~~~~f~~G~~~~~~~~~v~~~~~~~~Y~~slyw~l~tlst 354 (731)
. . +.. .++....+.++.|..|+||.++++++
T Consensus 129 --------~------------~--~~~---------------------------~~~~~~~~~f~~~~~s~~~~~~~~t~ 159 (200)
T PF00520_consen 129 --------P------------T--WDS---------------------------ENDIYGYENFDSFGESLYWLFQTMTG 159 (200)
T ss_dssp ------------------------SS-------------------------------SSTHHHHSSHHHHHHHHHHHHTT
T ss_pred --------c------------c--ccc---------------------------cccccccccccccccccccccccccc
Confidence 0 0 000 00112234567899999999999999
Q ss_pred cccCccccC-----chhhHHHH-HHHHHHHHHHHHHHHHHH
Q 035714 355 YAQELDTSI-----YVEENLLA-IFICILGSVLFALLIGNM 389 (731)
Q Consensus 355 vG~gd~~~~-----~~~E~~f~-i~i~i~G~ilfa~lIg~~ 389 (731)
.|+|+..+. +..+.++. +++.+.+.++++++||+|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 160 EGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp TTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 999999886 78899888 777777789999999986
No 10
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.36 E-value=1.6e-11 Score=126.77 Aligned_cols=153 Identities=14% Similarity=0.186 Sum_probs=113.8
Q ss_pred HhcCCcCCcchHHHHHHHHhhcEE-EEecCCCEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceEEEEEeeCCCCeeech
Q 035714 467 VRRVPFFSQMDDQLLDAICQRLVS-SLSIKGTYIVREGDPVNEMLFIIRGTLESSTTN-GGRDGFFNSITLQPGDFCGEE 544 (731)
Q Consensus 467 l~~vp~F~~ls~~~l~~L~~~l~~-~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~ 544 (731)
+++.+.|..++++.++.|....+. ..|++|+.|+++||+++.+|+|.+|.|+++..+ +|++.+. .++.+|++||+.
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~--~~~~~gd~~g~~ 92 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQIT--GFHLAGDLVGFD 92 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEE--EeccCCceeccc
Confidence 445555557999999999988864 689999999999999999999999999999876 5777664 488999999987
Q ss_pred hHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 035714 545 LLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKLQHAFRYYSHQWRTWASCFIQSAWRKFRK 624 (731)
Q Consensus 545 ~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~lq~~~r~ys~~~~~~~~~~~q~a~~r~~~ 624 (731)
.+ ..+ ++..+++|+++|+++.|++++|.+++.++|++....++.. +++.+...........+....
T Consensus 93 ~~----~~~------~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~ 158 (235)
T PRK11161 93 AI----GSG------QHPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLM----SGEIKGDQEMILLLSKKNAEE 158 (235)
T ss_pred cc----cCC------CCcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHH----HHHHHHHHHHHHHHhCCCHHH
Confidence 43 222 2346899999999999999999999999999887654443 222222223222233444556
Q ss_pred hHHHhhhhhhh
Q 035714 625 RKMAMDLSIKE 635 (731)
Q Consensus 625 R~~~~~~~~ae 635 (731)
|....++..++
T Consensus 159 Rla~~L~~l~~ 169 (235)
T PRK11161 159 RLAAFIYNLSR 169 (235)
T ss_pred HHHHHHHHHHH
Confidence 66666655444
No 11
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.36 E-value=1.1e-11 Score=111.10 Aligned_cols=112 Identities=29% Similarity=0.525 Sum_probs=98.2
Q ss_pred cCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecC-CcceEEEEEeeCCCCeeechhHhhhc
Q 035714 472 FFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNG-GRDGFFNSITLQPGDFCGEELLTWAL 550 (731)
Q Consensus 472 ~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~-g~~~~~~~~~l~~Gd~fGe~~ll~al 550 (731)
+|..++++.++.++..++.+.+.+|++|+.+|++.+.+|||.+|.++++..+. |++.. +..+.+|++||+..+ +
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~---~ 75 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQI--VGFLGPGDLFGELAL---L 75 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEecCCccCcChHHH---h
Confidence 47789999999999999999999999999999999999999999999988764 45554 458999999999975 2
Q ss_pred CCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHH
Q 035714 551 TPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSK 594 (731)
Q Consensus 551 ~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k 594 (731)
... ++..+++|.++|+++.|+.++|.+++.++|.+..+
T Consensus 76 ~~~------~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~ 113 (115)
T cd00038 76 GNG------PRSATVRALTDSELLVLPRSDFRRLLQEYPELARR 113 (115)
T ss_pred cCC------CCCceEEEcCceEEEEEeHHHHHHHHHHCcHhHHh
Confidence 222 47899999999999999999999999999987653
No 12
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.34 E-value=1.3e-11 Score=126.80 Aligned_cols=107 Identities=20% Similarity=0.219 Sum_probs=91.5
Q ss_pred HHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceEEEEEeeCCCCeeechhHhhhcCCCCCCCC
Q 035714 480 LLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTN-GGRDGFFNSITLQPGDFCGEELLTWALTPNSTLNL 558 (731)
Q Consensus 480 ~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~ll~al~~~~~~~~ 558 (731)
+..++....+.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+. .++.+|++||+.++ +...
T Consensus 23 ~~~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~--~~~~~g~~~G~~~~---~~~~----- 92 (226)
T PRK10402 23 FSFDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLI--DFFAAPCFIGEIEL---IDKD----- 92 (226)
T ss_pred CCHHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeee--eecCCCCeEEeehh---hcCC-----
Confidence 34467778889999999999999999999999999999999876 5776664 48999999999865 2322
Q ss_pred CCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHHH
Q 035714 559 PSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKLQ 597 (731)
Q Consensus 559 p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~lq 597 (731)
+++.+++|+++|+++.+++++|..++.++|.+....++
T Consensus 93 -~~~~~~~A~~~~~i~~i~~~~~~~ll~~~p~~~~~~~~ 130 (226)
T PRK10402 93 -HETKAVQAIEECWCLALPMKDCRPLLLNDALFLRKLCK 130 (226)
T ss_pred -CCCccEEEeccEEEEEEEHHHHHHHHhcCHHHHHHHHH
Confidence 58899999999999999999999999999988775543
No 13
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.33 E-value=4.3e-11 Score=107.78 Aligned_cols=115 Identities=22% Similarity=0.324 Sum_probs=98.4
Q ss_pred cCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceEEEEEeeCCCCeeechhHhhhc
Q 035714 472 FFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTN-GGRDGFFNSITLQPGDFCGEELLTWAL 550 (731)
Q Consensus 472 ~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~ll~al 550 (731)
+|.+++++.++.++..++.+.+++|++|+++|++.+.+|||.+|.++++..+ +|++.. +..+.+|++||+..++ .
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~~--~ 76 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQI--LGILGPGDFFGELALL--T 76 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEE--EEeecCCceechhhhc--c
Confidence 4788999999999999999999999999999999999999999999999875 444444 4599999999999762 0
Q ss_pred CCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHH
Q 035714 551 TPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKK 595 (731)
Q Consensus 551 ~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~ 595 (731)
... .++..+++|.++|+++.++.+++......+|.+..+.
T Consensus 77 ~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 116 (120)
T smart00100 77 NSR-----RAASATAVALELATLLRIDFRDFLQLLQENPQLLLEL 116 (120)
T ss_pred CCC-----cccceEEEEEeeEEEEccCHHHHHHHHHHhHHHHHHH
Confidence 112 2578999999999999999999999999999776544
No 14
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.30 E-value=1e-10 Score=117.68 Aligned_cols=154 Identities=20% Similarity=0.306 Sum_probs=117.3
Q ss_pred hcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceEEEEEeeCCCCeeechhH
Q 035714 468 RRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTN-GGRDGFFNSITLQPGDFCGEELL 546 (731)
Q Consensus 468 ~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l 546 (731)
...+.|..++.+....+....+...+++|++|+++||+++.+|+|.+|.++++..+ +|++.+.. ++++|++||+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~--~~~~g~~fg~~~l 80 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILG--FLGPGDFFGELAL 80 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEE--EecCCchhhhHHH
Confidence 34566666777777777788999999999999999999999999999999999887 46766654 9999999999976
Q ss_pred hhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhH
Q 035714 547 TWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKLQHAFRYYSHQWRTWASCFIQSAWRKFRKRK 626 (731)
Q Consensus 547 l~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~lq~~~r~ys~~~~~~~~~~~q~a~~r~~~R~ 626 (731)
+ ... ++..+++|+++|+++.+++++|.+++.+.|.+...+++...+-.. ...........+....|.
T Consensus 81 ~---~~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~~l~----~~~~~~~~~~~~~~~~r~ 147 (214)
T COG0664 81 L---GGD------PRSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLARRLR----QALERLSLLARKDVEERL 147 (214)
T ss_pred h---cCC------CccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHHHHH----HHHHHHHHHhhccHHHHH
Confidence 2 222 488999999999999999999999987788888766544443322 233333333455556666
Q ss_pred HHhhhhhhhh
Q 035714 627 MAMDLSIKES 636 (731)
Q Consensus 627 ~~~~~~~aee 636 (731)
....+..+..
T Consensus 148 ~~~l~~l~~~ 157 (214)
T COG0664 148 ARFLLNLGRR 157 (214)
T ss_pred HHHHHHHhhc
Confidence 6655555544
No 15
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.30 E-value=1.7e-11 Score=106.08 Aligned_cols=90 Identities=31% Similarity=0.401 Sum_probs=79.0
Q ss_pred EEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeeechhHhhhcCCCCCCCCCCcccEEEEcce
Q 035714 491 SLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRAVTE 570 (731)
Q Consensus 491 ~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~ll~al~~~~~~~~p~s~~tv~Alt~ 570 (731)
+.|++|++|+++|++++.+|||.+|.++++..+.+..... +..+.+|++||+..++ ..+ ++..+++|.++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~---~~~------~~~~~~~a~~~ 71 (91)
T PF00027_consen 2 KTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQI-IFFLGPGDIFGEIELL---TGK------PSPFTVIALTD 71 (91)
T ss_dssp EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEE-EEEEETTEEESGHHHH---HTS------BBSSEEEESSS
T ss_pred eEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeee-ecceeeeccccceeec---CCC------ccEEEEEEccC
Confidence 6899999999999999999999999999999886554332 5699999999999873 322 48899999999
Q ss_pred eEEEEeCHHHHHHHHHHhHH
Q 035714 571 VEAFALEAEDLKFVAHQFKR 590 (731)
Q Consensus 571 ~ell~L~~~df~~l~~~~p~ 590 (731)
|+++.|++++|.++++++|+
T Consensus 72 ~~~~~i~~~~~~~~~~~~p~ 91 (91)
T PF00027_consen 72 SEVLRIPREDFLQLLQQDPE 91 (91)
T ss_dssp EEEEEEEHHHHHHHHHHSHH
T ss_pred EEEEEEeHHHHHHHHHhCcC
Confidence 99999999999999999994
No 16
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.21 E-value=2e-10 Score=114.68 Aligned_cols=128 Identities=22% Similarity=0.208 Sum_probs=100.0
Q ss_pred CCEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceEEEEEeeCCCCeeechhHhhhcCCCCCCCCCCcccEEEEcceeEEE
Q 035714 496 GTYIVREGDPVNEMLFIIRGTLESSTTN-GGRDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAF 574 (731)
Q Consensus 496 ge~I~~eGd~~~~myfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~ll~al~~~~~~~~p~s~~tv~Alt~~ell 574 (731)
|+.|+++||+++.+|+|.+|.|+++..+ +|++.+ +.++.+|++||+.++ +..++ .++..+++|+++|+++
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~--l~~~~~g~~~G~~~~---~~~~~----~~~~~~~~A~~~~~v~ 71 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEIT--VALLRENSVFGVLSL---ITGHR----SDRFYHAVAFTRVELL 71 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEee--eEEccCCCEeeeeee---ccCCC----CccceEEEEecceEEE
Confidence 7899999999999999999999999865 467766 459999999999865 33221 1245789999999999
Q ss_pred EeCHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhHHHhhhhhhhh
Q 035714 575 ALEAEDLKFVAHQFKRLHSKKLQHAFRYYSHQWRTWASCFIQSAWRKFRKRKMAMDLSIKES 636 (731)
Q Consensus 575 ~L~~~df~~l~~~~p~l~~k~lq~~~r~ys~~~~~~~~~~~q~a~~r~~~R~~~~~~~~aee 636 (731)
.+++++|.+++.++|++...+++.. ++..+.....+.........+|....++..++.
T Consensus 72 ~i~~~~~~~l~~~~p~l~~~~~~~l----~~~l~~~~~~~~~l~~~~~~~Rla~~L~~l~~~ 129 (193)
T TIGR03697 72 AVPIEQVEKAIEEDPDLSMLLLQGL----SSRILQTEMMIETLAHRDMGSRLVSFLLILCRD 129 (193)
T ss_pred EeeHHHHHHHHHHChHHHHHHHHHH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 9999999999999999988766544 334444445455556777788888887776664
No 17
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.20 E-value=2.6e-10 Score=117.62 Aligned_cols=135 Identities=17% Similarity=0.114 Sum_probs=102.7
Q ss_pred HHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceEEEEEeeCCCCeeechhHhhhcCCCCCCCCCCc
Q 035714 483 AICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTN-GGRDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSS 561 (731)
Q Consensus 483 ~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~ll~al~~~~~~~~p~s 561 (731)
+++...+.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+. ..+.+|++||+.. .. ++
T Consensus 33 ~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~--~~~~~Gd~fG~~~------~~------~~ 98 (230)
T PRK09391 33 HAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIG--AFHLPGDVFGLES------GS------TH 98 (230)
T ss_pred cccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEE--EEecCCceecccC------CC------cC
Confidence 45666788999999999999999999999999999999875 5666654 4889999999641 11 46
Q ss_pred ccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhHHHhhhhhhh
Q 035714 562 TRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKLQHAFRYYSHQWRTWASCFIQSAWRKFRKRKMAMDLSIKE 635 (731)
Q Consensus 562 ~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~lq~~~r~ys~~~~~~~~~~~q~a~~r~~~R~~~~~~~~ae 635 (731)
..+++|+++|+++.++.++|.+++.++|++...+++...+... .....+........+.|....++..++
T Consensus 99 ~~~~~A~~ds~v~~i~~~~f~~l~~~~p~l~~~l~~~l~~~l~----~~~~~~~~l~~~~~~~Rla~~Ll~l~~ 168 (230)
T PRK09391 99 RFTAEAIVDTTVRLIKRRSLEQAAATDVDVARALLSLTAGGLR----HAQDHMLLLGRKTAMERVAAFLLEMDE 168 (230)
T ss_pred CeEEEEcCceEEEEEEHHHHHHHHhhChHHHHHHHHHHHHHHH----HHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999877655543222 223333333444555666666665544
No 18
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.17 E-value=4.1e-11 Score=129.84 Aligned_cols=125 Identities=26% Similarity=0.442 Sum_probs=110.3
Q ss_pred HHHHHHhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCee
Q 035714 462 LCIALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFC 541 (731)
Q Consensus 462 l~~~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~f 541 (731)
.+.++|+.+|+|.+++++.+..+++.++...|..|++|+++|+.++.+|+|.+|.|.+...+.+......+..+..||+|
T Consensus 269 ~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~F 348 (732)
T KOG0614|consen 269 QYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDYF 348 (732)
T ss_pred HHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccchh
Confidence 36789999999999999999999999999999999999999999999999999999999888764444446799999999
Q ss_pred echhHhhhcCCCCCCCCCCcccEEEEcce-eEEEEeCHHHHHHHHHHhHHHHHHH
Q 035714 542 GEELLTWALTPNSTLNLPSSTRTVRAVTE-VEAFALEAEDLKFVAHQFKRLHSKK 595 (731)
Q Consensus 542 Ge~~ll~al~~~~~~~~p~s~~tv~Alt~-~ell~L~~~df~~l~~~~p~l~~k~ 595 (731)
||-+++ ..- .|++++.|..+ ++++.|+++.|..++...-++..+.
T Consensus 349 GE~al~----~ed-----vRtAniia~~~gv~cl~lDresF~~liG~l~~l~ek~ 394 (732)
T KOG0614|consen 349 GERALL----GED-----VRTANIIAQAPGVECLTLDRESFKKLIGDLEELKEKD 394 (732)
T ss_pred hHHHhh----ccC-----ccchhhhccCCCceEEEecHHHHHHhcccHHHhhhhh
Confidence 999763 222 58999999998 9999999999999999988777644
No 19
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.13 E-value=1.1e-09 Score=110.28 Aligned_cols=128 Identities=18% Similarity=0.203 Sum_probs=97.5
Q ss_pred hcEEEEecCCCEEEcCCC--CcCeEEEEEeeEEEEEEec-CCcceEEEEEeeCCCCeeechhHhhhcCCCCCCCCCCccc
Q 035714 487 RLVSSLSIKGTYIVREGD--PVNEMLFIIRGTLESSTTN-GGRDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTR 563 (731)
Q Consensus 487 ~l~~~~~~~ge~I~~eGd--~~~~myfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~ll~al~~~~~~~~p~s~~ 563 (731)
.++.+.|++|++|+++|| +++.+|+|.+|.|+++..+ +|++.+.. .+.+||+||+..+ ..+ +++.
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~--~~~~Gd~~G~~~~----~~~------~~~~ 72 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLR--YVRPGEYFGEEAL----AGA------ERAY 72 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEE--EecCCCeechHHh----cCC------CCCc
Confidence 467889999999999999 7799999999999999876 57777754 8999999999743 222 3678
Q ss_pred EEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhHHHhhhhhhhh
Q 035714 564 TVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKLQHAFRYYSHQWRTWASCFIQSAWRKFRKRKMAMDLSIKES 636 (731)
Q Consensus 564 tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~lq~~~r~ys~~~~~~~~~~~q~a~~r~~~R~~~~~~~~aee 636 (731)
+++|+++|+++.|+.++| .|++...++++..+...+ ....+.........+|+...+++.++.
T Consensus 73 ~~~A~~~~~v~~i~~~~~------~~~~~~~l~~~l~~~~~~----~~~~~~~l~~~~~~~Rla~~Ll~l~~~ 135 (202)
T PRK13918 73 FAEAVTDSRIDVLNPALM------SAEDNLVLTQHLVRTLAR----AYESIYRLVGQRLKNRIAAALLELSDT 135 (202)
T ss_pred eEEEcCceEEEEEEHHHc------ChhhHHHHHHHHHHHHHH----HHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 999999999999999987 466665555554433333 333344445667778888888776664
No 20
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.07 E-value=1.2e-09 Score=122.43 Aligned_cols=113 Identities=25% Similarity=0.396 Sum_probs=98.8
Q ss_pred HHHHhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeeec
Q 035714 464 IALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCGE 543 (731)
Q Consensus 464 ~~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 543 (731)
.++++++++|++++++.++.++..++.+.|++|++|+++||.++.+|+|.+|.|+++..+++.+.+ +..+++|++||+
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~--l~~l~~Gd~fG~ 84 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRP--EFLLKRYDYFGY 84 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEE--EEEeCCCCEeeh
Confidence 466889999999999999999999999999999999999999999999999999999877544444 458999999996
Q ss_pred hhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhH
Q 035714 544 ELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFK 589 (731)
Q Consensus 544 ~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p 589 (731)
. + ... ++..+++|.++|+++.|++++|..+...++
T Consensus 85 ~-l----~~~------~~~~~~~A~~d~~v~~ip~~~~~~~~~~~~ 119 (413)
T PLN02868 85 G-L----SGS------VHSADVVAVSELTCLVLPHEHCHLLSPKSI 119 (413)
T ss_pred h-h----CCC------CcccEEEECCCEEEEEEcHHHHhhhccccc
Confidence 4 2 222 478999999999999999999988876655
No 21
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.98 E-value=1.1e-09 Score=114.59 Aligned_cols=117 Identities=21% Similarity=0.318 Sum_probs=101.6
Q ss_pred HHHHhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeeec
Q 035714 464 IALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCGE 543 (731)
Q Consensus 464 ~~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 543 (731)
...+++.-+|++++++.+..+...|..+.+..|+.|+++||.++.+|+|.+|.++++..+ + . +..+.+|..|||
T Consensus 121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~~--~---~-v~~~~~g~sFGE 194 (368)
T KOG1113|consen 121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVNG--T---Y-VTTYSPGGSFGE 194 (368)
T ss_pred HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEECC--e---E-EeeeCCCCchhh
Confidence 567788889999999999999999999999999999999999999999999999999862 2 1 568999999999
Q ss_pred hhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHH
Q 035714 544 ELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKK 595 (731)
Q Consensus 544 ~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~ 595 (731)
.+|. -+ |||.+|++|.+++.+|.|++..|.+++-.......++
T Consensus 195 lALm----yn-----~PRaATv~a~t~~klWgldr~SFrrIi~~s~~kkrkM 237 (368)
T KOG1113|consen 195 LALM----YN-----PPRAATVVAKSLKKLWGLDRTSFRRIIMKSCIKKRKM 237 (368)
T ss_pred hHhh----hC-----CCcccceeeccccceEEEeeceeEEEeeccchhhhhh
Confidence 9763 23 3799999999999999999999988876655444444
No 22
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=98.95 E-value=7.7e-09 Score=114.17 Aligned_cols=117 Identities=21% Similarity=0.272 Sum_probs=102.6
Q ss_pred HHHHhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeeec
Q 035714 464 IALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCGE 543 (731)
Q Consensus 464 ~~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 543 (731)
.+++.++|.|..++++.+.+|...++...|.+||.|+..|.+.+.+|+|.+|.|++...++. . +..+.+||.||-
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~g~---v--~~~~~~gdlFg~ 80 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDGGE---V--LDRLAAGDLFGF 80 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCCCe---e--eeeeccCccccc
Confidence 57889999999999999999999999999999999999999999999999999999876543 3 459999999999
Q ss_pred hhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHH
Q 035714 544 ELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSK 594 (731)
Q Consensus 544 ~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k 594 (731)
.+++ +.. +......|.+++.+|.|+++.|.++++++|+++.-
T Consensus 81 ~~l~----~~~-----~~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~f 122 (610)
T COG2905 81 SSLF----TEL-----NKQRYMAAEEDSLCYLLPKSVFMQLMEENPEFADF 122 (610)
T ss_pred hhhc----ccC-----CCcceeEeeccceEEecCHHHHHHHHHhCcHHHHH
Confidence 9762 222 24567888889999999999999999999988763
No 23
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=98.92 E-value=1.4e-09 Score=118.21 Aligned_cols=116 Identities=21% Similarity=0.394 Sum_probs=102.1
Q ss_pred HHHHHHHHHhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCC
Q 035714 459 QRHLCIALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPG 538 (731)
Q Consensus 459 ~~~l~~~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~G 538 (731)
...+..+.+.+-.|+++++.+.+..++..|-++.|.+|++|++|||+++.+|.+..|.+++... |+ . +..+++|
T Consensus 148 ~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~~--g~--l--l~~m~~g 221 (732)
T KOG0614|consen 148 AKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSRE--GK--L--LGKMGAG 221 (732)
T ss_pred HHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEeeC--Ce--e--eeccCCc
Confidence 3455677788888999999999999999999999999999999999999999999999999863 32 2 6799999
Q ss_pred CeeechhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhH
Q 035714 539 DFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFK 589 (731)
Q Consensus 539 d~fGe~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p 589 (731)
..|||.+++.+ - +|+++|+|+++|.+++|+++.|+.++...-
T Consensus 222 tvFGELAILyn---c------tRtAsV~alt~~~lWaidR~vFq~IM~~tg 263 (732)
T KOG0614|consen 222 TVFGELAILYN---C------TRTASVRALTDVRLWAIDREVFQAIMMRTG 263 (732)
T ss_pred hhhhHHHHHhC---C------cchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999988532 2 599999999999999999999999987655
No 24
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=98.90 E-value=3.3e-10 Score=117.60 Aligned_cols=52 Identities=17% Similarity=0.351 Sum_probs=45.2
Q ss_pred HHHHHHHHHhhcccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035714 342 LYCLWWGLRTLSSYAQELDTSIYVEENLLAIFICILGSVLFALLIGNMQTYF 393 (731)
Q Consensus 342 ~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~ilfa~lIg~~~~~l 393 (731)
-.++||++.|||||||||..|.+.+.+++..+++|.|++-.|+-+-.+.+-+
T Consensus 395 PdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVsNF 446 (507)
T KOG1545|consen 395 PDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVSNF 446 (507)
T ss_pred cccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEecc
Confidence 3579999999999999999999999999999999999998888665544444
No 25
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.90 E-value=1.5e-08 Score=110.83 Aligned_cols=89 Identities=24% Similarity=0.360 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHhhcccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhC
Q 035714 338 YRKILYCLWWGLRTLSSYAQELDTSIYVEENLLAIFICILGSVLFALLIGNMQTYFQSMSVRIEEWRIKRRDTEEWMRHR 417 (731)
Q Consensus 338 ~~~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~ilfa~lIg~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~ 417 (731)
+..|-.++|||+.|+||+||||++|.+...++.+..+.++|+.+||+--|.+++=+.-.- +++.| =+++-+.+
T Consensus 267 F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKV--Qeq~R-----QKHf~rrr 339 (654)
T KOG1419|consen 267 FPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKV--QEQHR-----QKHFNRRR 339 (654)
T ss_pred chhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhh--HHHHH-----HHHHHhhc
Confidence 668999999999999999999999999999999999999999999998887766553211 11111 23566777
Q ss_pred CCChHHHHHHHHHHHH
Q 035714 418 QLPPDLQERVHQFVQY 433 (731)
Q Consensus 418 ~Lp~~L~~RV~~y~~y 433 (731)
+.-..|-+-..+|+.-
T Consensus 340 ~pAA~LIQc~WR~yaa 355 (654)
T KOG1419|consen 340 NPAASLIQCAWRYYAA 355 (654)
T ss_pred chHHHHHHHHHHHHhc
Confidence 7777888888777753
No 26
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.73 E-value=3.1e-08 Score=103.79 Aligned_cols=120 Identities=17% Similarity=0.266 Sum_probs=105.2
Q ss_pred HHHHHHHHHhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCC
Q 035714 459 QRHLCIALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPG 538 (731)
Q Consensus 459 ~~~l~~~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~G 538 (731)
++.++.++|+.+|+++.++......++..+.++.|.+|+.|+++|++++.+|+|.+|.|.+....+| +. + .++.|
T Consensus 234 krkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~---v~-v-kl~~~ 308 (368)
T KOG1113|consen 234 KRKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDG---VE-V-KLKKG 308 (368)
T ss_pred hhhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccCC---eE-E-Eechh
Confidence 3567899999999999999999999999999999999999999999999999999999998876654 22 3 89999
Q ss_pred CeeechhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHH
Q 035714 539 DFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLH 592 (731)
Q Consensus 539 d~fGe~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~ 592 (731)
|+|||.+++ ... ++.+++.|.++..+..+++..|+.++.-..++-
T Consensus 309 dyfge~al~---~~~------pr~Atv~a~~~~kc~~~dk~~ferllgpc~dil 353 (368)
T KOG1113|consen 309 DYFGELALL---KNL------PRAATVVAKGRLKCAKLDKPRFERLLGPCQDIL 353 (368)
T ss_pred hhcchHHHH---hhc------hhhceeeccCCceeeeeChHHHHHHhhHHHHHH
Confidence 999999873 222 589999999999999999999999998755443
No 27
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=98.69 E-value=1.3e-07 Score=80.53 Aligned_cols=55 Identities=15% Similarity=0.305 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhhcccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035714 340 KILYCLWWGLRTLSSYAQELDTSIYVEENLLAIFICILGSVLFALLIGNMQTYFQ 394 (731)
Q Consensus 340 ~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~ilfa~lIg~~~~~l~ 394 (731)
.|..++||+..++||+||||+.|.+...++++++.+++|+.++++.++.+.+.+.
T Consensus 24 ~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 24 SFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp SHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999999999999999999999999999998874
No 28
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.44 E-value=8.4e-08 Score=100.66 Aligned_cols=180 Identities=17% Similarity=0.310 Sum_probs=110.3
Q ss_pred cchhhhhHHHHHHHHHHHHHHhhheeeecCCCCccCCCeEeecHHHHHHHHhhh-hhHHHHHhhCChhHHHHHhhccCCC
Q 035714 111 GFLITVFRTVADLFFVFNIFMKFRTAFVSPSSRSFGRGELVMDAREIRSRYFKT-DFVIDLAAALPLPQFVVFLIIPSMR 189 (731)
Q Consensus 111 ~~~~~~~~~i~d~~f~lDi~l~f~Tay~~~~s~~~~~G~lV~d~~~Ia~~Ylks-~F~iDlls~lPl~~i~~~~~~~~~~ 189 (731)
...++.+++.+-++|....++++..| |+ ..|++++ .-+||+++++|++ +.++.++..
T Consensus 226 ~~aFFclDTACVmIFT~EYlLRL~aA---Ps----------------R~rF~RSvMSiIDVvAIlPYY---igLv~t~N~ 283 (632)
T KOG4390|consen 226 PVAFFCLDTACVMIFTGEYLLRLFAA---PS----------------RYRFLRSVMSIIDVVAILPYY---IGLVMTDNE 283 (632)
T ss_pred ceeeEEecceeEEEeeHHHHHHHHcC---ch----------------HHHHHHHHHHHHHHhhhhhhh---eEEEecCCc
Confidence 34456677788888888888887654 32 3578888 7799999999975 333444422
Q ss_pred -CcccccchhHHHHHHHHHhhhhhhhhcccccch--hhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhh
Q 035714 190 -DSKADYNNSSLALVILLQYIPRLFVIFPLNGRI--IKTTGVVAKADWAGAGYNLVLFLLSSHVLGATWYLVAVGRQFSC 266 (731)
Q Consensus 190 -~~~~~~~~~~L~li~llqyl~Rl~ri~~l~~~i--~~~~~~~~~~~~~~~~~~lll~~l~~H~~~C~wy~ls~~~~~~c 266 (731)
-+..+.+.+ +.|.+||+++.+.- .+..|+-.++-..-.-+.|+...+++-+++.+.|+.-..
T Consensus 284 DVSGaFVTLR----------VFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLlFSLtMAIIIFATvMfYAEKg----- 348 (632)
T KOG4390|consen 284 DVSGAFVTLR----------VFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEKG----- 348 (632)
T ss_pred cccceeEEEE----------eeeeeeeeeecccccccchhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcc-----
Confidence 233444333 33344444433321 122333222222222244444445556666666654210
Q ss_pred hhhhhhhccccCCCCccccccCCCCCCcCccccccccccccccccccccccccccccchhcccccccCchhHHHHHHHHH
Q 035714 267 WKDRCNWENRHRALCLPYFLDCSTLEEPDRLNWRNVTTVIDDCDAVREAEIDFKFGIFAECFTDDVAASHFYRKILYCLW 346 (731)
Q Consensus 267 w~~~c~~~~~~~~~c~~~~l~~~~~~~~~~~~W~~~~~l~~~c~~~~~~~~~f~~G~~~~~~~~~v~~~~~~~~Y~~sly 346 (731)
.+.+-+...-.+||
T Consensus 349 ------------------------------------------------------------------~~at~FTsIPaaFW 362 (632)
T KOG4390|consen 349 ------------------------------------------------------------------SSATKFTSIPAAFW 362 (632)
T ss_pred ------------------------------------------------------------------ccccccccCcHhHh
Confidence 00111222346899
Q ss_pred HHHHhhcccccCccccCchhhHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q 035714 347 WGLRTLSSYAQELDTSIYVEENLLAIFICILGSVLFALL----IGNMQTYF 393 (731)
Q Consensus 347 w~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~ilfa~l----Ig~~~~~l 393 (731)
+.+.||||+||||..|.+...++|..++.+.|+++.|+- ++|++.+-
T Consensus 363 YTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIY 413 (632)
T KOG4390|consen 363 YTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIY 413 (632)
T ss_pred hheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhHHH
Confidence 999999999999999999999999999999999988874 55666555
No 29
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.30 E-value=8e-07 Score=97.30 Aligned_cols=137 Identities=19% Similarity=0.208 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHhhcccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhC
Q 035714 338 YRKILYCLWWGLRTLSSYAQELDTSIYVEENLLAIFICILGSVLFALLIGNMQTYFQSMSVRIEEWRIKRRDTEEWMRHR 417 (731)
Q Consensus 338 ~~~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~ilfa~lIg~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~ 417 (731)
...|..|.|+-+.||+||||||+..++...++|.+|.++.|+.+||--+..+..++.+-..---||+..-. =+|-
T Consensus 286 rltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk~ehg-----kkhi 360 (1103)
T KOG1420|consen 286 RLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYKAEHG-----KKHI 360 (1103)
T ss_pred cchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceeehhcC-----CeeE
Confidence 44689999999999999999999999999999999999999999999999999888765543333321100 0000
Q ss_pred CCC-hHHHHHHHHHHHHHHHHhc-CCC-HHHHHhhCChhhHHHHHHHHHHHHHhcCCcCCc--chHHHHH
Q 035714 418 QLP-PDLQERVHQFVQYKWLATR-GVN-EESILRSLPVDLRREIQRHLCIALVRRVPFFSQ--MDDQLLD 482 (731)
Q Consensus 418 ~Lp-~~L~~RV~~y~~y~w~~~~-g~~-e~~ll~~LP~~Lr~dI~~~l~~~ll~~vp~F~~--ls~~~l~ 482 (731)
-+- .-..+.|..|++--.++.| .+| |--+|...||+|-.+ .++.....++.+|.+ |++-.+.
T Consensus 361 vvcghityesvshflkdflhedrddvdvevvflhr~~pdlele---glfkrhft~veffqgtvmnp~dl~ 427 (1103)
T KOG1420|consen 361 VVCGHITYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELE---GLFKRHFTQVEFFQGTVMNPHDLA 427 (1103)
T ss_pred EEecceeHHHHHHHHHHHhhccccccceEEEEEecCCCCcchH---HHHhhheeeEEEecccccChhhhh
Confidence 011 1112334444443333333 233 345788899988654 445666678888875 5554433
No 30
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=98.00 E-value=8.7e-06 Score=93.95 Aligned_cols=114 Identities=20% Similarity=0.278 Sum_probs=96.6
Q ss_pred HHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecC-CcceEEEEEeeCCCCeeechhHhhhcCCCCCCC
Q 035714 479 QLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNG-GRDGFFNSITLQPGDFCGEELLTWALTPNSTLN 557 (731)
Q Consensus 479 ~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~-g~~~~~~~~~l~~Gd~fGe~~ll~al~~~~~~~ 557 (731)
.++..+-..+.-....+|+.++++||..+++|+|..|+++.....+ |+..+ +..++.||.+|+.+. +..+
T Consensus 499 p~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i--~~EygrGd~iG~~E~---lt~~---- 569 (1158)
T KOG2968|consen 499 PFLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEI--VGEYGRGDLIGEVEM---LTKQ---- 569 (1158)
T ss_pred HHHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchh--hhhccCcceeehhHH---hhcC----
Confidence 3555566667889999999999999999999999999999987754 44435 459999999999986 4445
Q ss_pred CCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 035714 558 LPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKLQHAFRYY 603 (731)
Q Consensus 558 ~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~lq~~~r~y 603 (731)
++..|+.|+.++++..|+..-|..+..+||.+..++.+..++.+
T Consensus 570 --~R~tTv~AvRdSelariPe~l~~~ik~ryP~v~~rl~~ll~~~~ 613 (1158)
T KOG2968|consen 570 --PRATTVMAVRDSELARIPEGLLNFIKLRYPQVVTRLIKLLAEKI 613 (1158)
T ss_pred --CccceEEEEeehhhhhccHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 48899999999999999999999999999999888877777766
No 31
>PRK10537 voltage-gated potassium channel; Provisional
Probab=97.64 E-value=0.00035 Score=77.54 Aligned_cols=54 Identities=19% Similarity=0.242 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhhcccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035714 340 KILYCLWWGLRTLSSYAQELDTSIYVEENLLAIFICILGSVLFALLIGNMQTYF 393 (731)
Q Consensus 340 ~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~ilfa~lIg~~~~~l 393 (731)
.+..|+||++.|+||+||||+.|.+...++|+++++++|+.+|++.++.+...+
T Consensus 168 s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 168 SLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred CHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999998877644
No 32
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=97.56 E-value=0.0052 Score=67.25 Aligned_cols=91 Identities=16% Similarity=0.188 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHhhcccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhC
Q 035714 338 YRKILYCLWWGLRTLSSYAQELDTSIYVEENLLAIFICILGSVLFALLIGNMQTYFQSMSVRIEEWRIKRRDTEEWMRHR 417 (731)
Q Consensus 338 ~~~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~ilfa~lIg~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~ 417 (731)
...|+.++|....|..++||||+.|.|...+..+++..++|..+-|.+++.++.-+. ...--+.+.+||-..
T Consensus 285 ~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKLe--------Lt~aEKhVhNFMmDt 356 (489)
T KOG3684|consen 285 TINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKLE--------LTKAEKHVHNFMMDT 356 (489)
T ss_pred HHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Confidence 557899999999999999999999999999999999999999999999998876553 333344578888888
Q ss_pred CCChHHHHHHHHHHHHHHH
Q 035714 418 QLPPDLQERVHQFVQYKWL 436 (731)
Q Consensus 418 ~Lp~~L~~RV~~y~~y~w~ 436 (731)
+|-+++++-..+=++..|.
T Consensus 357 qLTk~~KnAAA~VLqeTW~ 375 (489)
T KOG3684|consen 357 QLTKEHKNAAANVLQETWL 375 (489)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888887777777776
No 33
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.53 E-value=0.00039 Score=75.36 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhhcccccCc--cccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 035714 339 RKILYCLWWGLRTLSSYAQEL--DTSIYVEENLLAIFICILGSVLFALLIGNMQTYFQSMS 397 (731)
Q Consensus 339 ~~Y~~slyw~l~tlstvG~gd--~~~~~~~E~~f~i~i~i~G~ilfa~lIg~~~~~l~~~~ 397 (731)
..+..+|++++.|++|+|||. ++|....-.+..++-+++|+++.|+++|.+-.=+..-.
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP~ 143 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRPK 143 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 356789999999999999998 56777777788889999999999999999887775443
No 34
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=97.39 E-value=0.00015 Score=60.88 Aligned_cols=35 Identities=20% Similarity=0.335 Sum_probs=32.4
Q ss_pred ceeeCCCChhHHHHHHHHHHHHHHHHHHhhhhccc
Q 035714 60 FQILDPDSEAVSHWNYVFLATCIIALLLDPLYFFL 94 (731)
Q Consensus 60 ~~ii~P~s~~~~~W~~i~li~~~~~~~~~Pl~~~~ 94 (731)
..||||.|+|+.+||.+++++++++++++|+.++|
T Consensus 36 ~~IIHP~S~fR~~WD~~m~~~~~~~~~~iP~~isF 70 (77)
T PF08412_consen 36 PWIIHPFSKFRFYWDLIMLILLLYNLIIIPFRISF 70 (77)
T ss_pred CeEEcCCccHHHHHHHHHHHHHHHHHHHHhhhheE
Confidence 47999999999999999999999999999998655
No 35
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.17 E-value=0.002 Score=75.19 Aligned_cols=113 Identities=18% Similarity=0.230 Sum_probs=89.0
Q ss_pred HHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceEEEEEeeCCCCeeechh-HhhhcCCCCCCCCCC
Q 035714 483 AICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTN-GGRDGFFNSITLQPGDFCGEEL-LTWALTPNSTLNLPS 560 (731)
Q Consensus 483 ~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~-ll~al~~~~~~~~p~ 560 (731)
.++.+++...+..|++|++.|++.+.+|.+.+|.+.++..+ +|++..+ ....+|+-|-... ++..+...+ .+.
T Consensus 110 ~L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~ll--k~V~~G~~~tSllSiLd~l~~~p---s~~ 184 (1158)
T KOG2968|consen 110 ELDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYLL--KTVPPGGSFTSLLSILDSLPGFP---SLS 184 (1158)
T ss_pred eechhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceeeE--eeccCCCchHhHHHHHHhccCCC---ccc
Confidence 34477888899999999999999999999999999998887 4666664 4899997665543 332222222 245
Q ss_pred cccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHHHHHH
Q 035714 561 STRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKLQHAF 600 (731)
Q Consensus 561 s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~lq~~~ 600 (731)
++..++|.++|.+..++...|..+...||+-..+.+|-+.
T Consensus 185 ~~i~akA~t~~tv~~~p~~sF~~~~~k~P~s~iriiQvvm 224 (1158)
T KOG2968|consen 185 RTIAAKAATDCTVARIPYTSFRESFHKNPESSIRIIQVVM 224 (1158)
T ss_pred ceeeeeeecCceEEEeccchhhhhhccChHHHHHHHHHHH
Confidence 6889999999999999999999999999987776655543
No 36
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.84 E-value=0.038 Score=65.12 Aligned_cols=89 Identities=17% Similarity=0.257 Sum_probs=54.6
Q ss_pred ccceeeCCCChhHHH---------HHHHHHHHHHHHHHHhhhhccccccccccccccccCCCcchhhhhHHHHHHHHHHH
Q 035714 58 WRFQILDPDSEAVSH---------WNYVFLATCIIALLLDPLYFFLPSVNREEACLETDGNTGFLITVFRTVADLFFVFN 128 (731)
Q Consensus 58 ~~~~ii~P~s~~~~~---------W~~i~li~~~~~~~~~Pl~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~d~~f~lD 128 (731)
|.+.+|.|+++|+.. .|.++++.++++.+.+-+. -|.+. -...-.+++++-++|+-.+|+..
T Consensus 1102 Ws~ylF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtiale--rp~i~-------~~s~EriFltlsnyIFtaIfV~E 1172 (1956)
T KOG2302|consen 1102 WSKYLFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALE--RPAIV-------EGSTERIFLTLSNYIFTAIFVVE 1172 (1956)
T ss_pred HHHHhcCcccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhc--ccccc-------cCcceEEEEEecchHHHHHHHHH
Confidence 445689999999875 4455555555555555443 11111 11111233444469999999999
Q ss_pred HHHhhh-eeeecCCCCccCCCeEeecHHHHHHHHhhh-hhHHHHHh
Q 035714 129 IFMKFR-TAFVSPSSRSFGRGELVMDAREIRSRYFKT-DFVIDLAA 172 (731)
Q Consensus 129 i~l~f~-Tay~~~~s~~~~~G~lV~d~~~Ia~~Ylks-~F~iDlls 172 (731)
|.++-. .|.+- || ..|+++ |=.+|.+-
T Consensus 1173 m~lKVVALGl~f--------ge---------~aYl~ssWN~LDgfl 1201 (1956)
T KOG2302|consen 1173 MTLKVVALGLYF--------GE---------QAYLRSSWNVLDGFL 1201 (1956)
T ss_pred HHHHHHhhhhcc--------ch---------HHHHHHHHHhhhHHH
Confidence 999866 35442 44 479987 87777654
No 37
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=96.75 E-value=0.0026 Score=70.97 Aligned_cols=57 Identities=11% Similarity=0.231 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhhcccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 035714 341 ILYCLWWGLRTLSSYAQELDTSIYVEENLLAIFICILGSVLFALLIGNMQTYFQSMS 397 (731)
Q Consensus 341 Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~ilfa~lIg~~~~~l~~~~ 397 (731)
+..++|++.+++||+|||++.|.+...++|+|+..++|+-++.+++++++..+...-
T Consensus 116 f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~ 172 (433)
T KOG1418|consen 116 FSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSL 172 (433)
T ss_pred cchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999999999986433
No 38
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=96.50 E-value=0.058 Score=54.27 Aligned_cols=96 Identities=10% Similarity=0.001 Sum_probs=71.8
Q ss_pred HHHHHHhhcEEEEecCCCEE-EcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeeechhHhhhcCCCCCCCC
Q 035714 480 LLDAICQRLVSSLSIKGTYI-VREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCGEELLTWALTPNSTLNL 558 (731)
Q Consensus 480 ~l~~L~~~l~~~~~~~ge~I-~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~ll~al~~~~~~~~ 558 (731)
..+.+....++..+++|..+ .-+....+..++|.+|.+.+. ..++ -. +.+..+...||-... +.+..
T Consensus 14 L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsir-r~d~--ll--~~t~~aP~IlGl~~~---~~~~~---- 81 (207)
T PRK11832 14 LDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLR-REEN--VL--IGITQAPYIMGLADG---LMKND---- 81 (207)
T ss_pred HHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEE-ecCC--eE--EEeccCCeEeecccc---cCCCC----
Confidence 44566666778899999997 433334467999999999994 3333 22 457788889998643 33322
Q ss_pred CCcccEEEEcceeEEEEeCHHHHHHHHHHhH
Q 035714 559 PSSTRTVRAVTEVEAFALEAEDLKFVAHQFK 589 (731)
Q Consensus 559 p~s~~tv~Alt~~ell~L~~~df~~l~~~~p 589 (731)
..+.++|.++|+++.++.++|.++++++.
T Consensus 82 --~~~~l~ae~~c~~~~i~~~~~~~iie~~~ 110 (207)
T PRK11832 82 --IPYKLISEGNCTGYHLPAKQTITLIEQNQ 110 (207)
T ss_pred --ceEEEEEcCccEEEEeeHHHHHHHHHHhc
Confidence 45789999999999999999999999866
No 39
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=95.47 E-value=0.023 Score=64.43 Aligned_cols=114 Identities=17% Similarity=0.331 Sum_probs=89.2
Q ss_pred HHHHHHHhcCCcCCcchHHHHHHHHhhcEE-EEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCC
Q 035714 461 HLCIALVRRVPFFSQMDDQLLDAICQRLVS-SLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGD 539 (731)
Q Consensus 461 ~l~~~ll~~vp~F~~ls~~~l~~L~~~l~~-~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd 539 (731)
....++..+.|-|.+|+-...+++|..|.. +.-..|.+|+..|+.-+..+.|+.|+|++...+|.++ .+.-|+
T Consensus 277 eqLLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~PdGk~e------~l~mGn 350 (1283)
T KOG3542|consen 277 EQLLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPDGKRE------ELKMGN 350 (1283)
T ss_pred HHHHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCCCceE------Eeeccc
Confidence 334788899999999999999999998764 4567899999999999999999999999999876543 678899
Q ss_pred eeechhHhhhcCCCCCCCCCCcccEE-EEcceeEEEEeCHHHHHHHHHHhH
Q 035714 540 FCGEELLTWALTPNSTLNLPSSTRTV-RAVTEVEAFALEAEDLKFVAHQFK 589 (731)
Q Consensus 540 ~fGe~~ll~al~~~~~~~~p~s~~tv-~Alt~~ell~L~~~df~~l~~~~p 589 (731)
.||...- .+.+. ..-.+ .-+.+|+...+...|+-.++.+--
T Consensus 351 SFG~~PT---~dkqy------m~G~mRTkVDDCqFVciaqqDycrIln~ve 392 (1283)
T KOG3542|consen 351 SFGAEPT---PDKQY------MIGEMRTKVDDCQFVCIAQQDYCRILNTVE 392 (1283)
T ss_pred ccCCCCC---cchhh------hhhhhheecccceEEEeehhhHHHHHHHHH
Confidence 9997632 22221 11112 236789999999999999887644
No 40
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=94.98 E-value=0.26 Score=46.83 Aligned_cols=109 Identities=19% Similarity=0.247 Sum_probs=83.3
Q ss_pred cchHHHHHHHHhh-cEEEEecCCCEEEcCCC-CcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeeechhHhhhcCC
Q 035714 475 QMDDQLLDAICQR-LVSSLSIKGTYIVREGD-PVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCGEELLTWALTP 552 (731)
Q Consensus 475 ~ls~~~l~~L~~~-l~~~~~~~ge~I~~eGd-~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~ll~al~~ 552 (731)
+.+....+.|+.. .+.....+|+.-.-||. +.+.+-++++|++++... |+ + +-.+.|-+|....+.. +..+
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~--g~--f--LH~I~p~qFlDSPEW~-s~~~ 86 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCD--GR--F--LHYIYPYQFLDSPEWE-SLRP 86 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEEC--CE--e--eEeecccccccChhhh-cccc
Confidence 4678888888777 67789999998888885 779999999999998763 32 3 3377888888776652 2211
Q ss_pred CCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHH
Q 035714 553 NSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHS 593 (731)
Q Consensus 553 ~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~ 593 (731)
.. ...-..|+.|.++|..+..+++.++.++.+.|-+..
T Consensus 87 s~---~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~~ 124 (153)
T PF04831_consen 87 SE---DDKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLAA 124 (153)
T ss_pred CC---CCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHHH
Confidence 11 123578999999999999999999999999986554
No 41
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=94.86 E-value=0.11 Score=56.01 Aligned_cols=58 Identities=14% Similarity=0.234 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhhcccccCcccc--CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 035714 340 KILYCLWWGLRTLSSYAQELDTS--IYVEENLLAIFICILGSVLFALLIGNMQTYFQSMS 397 (731)
Q Consensus 340 ~Y~~slyw~l~tlstvG~gd~~~--~~~~E~~f~i~i~i~G~ilfa~lIg~~~~~l~~~~ 397 (731)
.+..+|-+++-|=+|+|||--.+ .-..-++..++-+|+|+++-|+++|.|-.=+..-.
T Consensus 112 sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarPk 171 (400)
T KOG3827|consen 112 SFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARPK 171 (400)
T ss_pred chhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 34567778889999999996443 33445566677789999999999998876654433
No 42
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=94.35 E-value=0.21 Score=52.83 Aligned_cols=55 Identities=11% Similarity=0.147 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhhcccccCccccCch-------hh-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035714 340 KILYCLWWGLRTLSSYAQELDTSIYV-------EE-NLLAIFICILGSVLFALLIGNMQTYFQ 394 (731)
Q Consensus 340 ~Y~~slyw~l~tlstvG~gd~~~~~~-------~E-~~f~i~i~i~G~ilfa~lIg~~~~~l~ 394 (731)
.|+.|+|+.+.|+||+|+||..+.-. .+ ..|+.+.+++|+.+++-+++.+.--+.
T Consensus 186 syfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~ 248 (350)
T KOG4404|consen 186 SYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFM 248 (350)
T ss_pred chhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888999999999999999876433 22 357777788899888877766554443
No 43
>PLN03223 Polycystin cation channel protein; Provisional
Probab=94.17 E-value=6.9 Score=49.09 Aligned_cols=31 Identities=13% Similarity=0.172 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035714 366 EENLLAIFICILGSVLFALLIGNMQTYFQSM 396 (731)
Q Consensus 366 ~E~~f~i~i~i~G~ilfa~lIg~~~~~l~~~ 396 (731)
+-..|..+++++.+++.-++|+.|-..++..
T Consensus 1395 GPIYFfSFILLV~FILLNMFIAII~DSFsEV 1425 (1634)
T PLN03223 1395 GMIYFYSYNIFVFMILFNFLLAIICDAFGEV 1425 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888887777777777666643
No 44
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=92.78 E-value=0.02 Score=60.24 Aligned_cols=45 Identities=11% Similarity=0.169 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhhcccccCccccCchhhHHHHHHHHHHHHHHHH
Q 035714 339 RKILYCLWWGLRTLSSYAQELDTSIYVEENLLAIFICILGSVLFA 383 (731)
Q Consensus 339 ~~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~ilfa 383 (731)
-++.-+||++.+.+||+|||-.+|.|++.++|+|+-.++|+-+--
T Consensus 79 WkF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~l 123 (350)
T KOG4404|consen 79 WKFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTL 123 (350)
T ss_pred cccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHH
Confidence 366779999999999999999999999999999999999875543
No 45
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=91.27 E-value=0.25 Score=55.11 Aligned_cols=39 Identities=10% Similarity=0.073 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhcccccCccccCchhhHHHHHHHHHHHHH
Q 035714 342 LYCLWWGLRTLSSYAQELDTSIYVEENLLAIFICILGSV 380 (731)
Q Consensus 342 ~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~i 380 (731)
+.|+|+...|.+||||||..|......+..++++-+.++
T Consensus 219 f~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~ 257 (1087)
T KOG3193|consen 219 FTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALG 257 (1087)
T ss_pred eeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHh
Confidence 467899999999999999999877766655544444433
No 46
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=88.21 E-value=0.69 Score=52.99 Aligned_cols=105 Identities=16% Similarity=0.213 Sum_probs=77.5
Q ss_pred ChhhHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEE
Q 035714 451 PVDLRREIQRHLCIALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFF 530 (731)
Q Consensus 451 P~~Lr~dI~~~l~~~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~ 530 (731)
|+.||.-.....-...+.....|.++-..-++++|.......++.+.++++.||.+...|++++|.|-+.. .
T Consensus 23 ~~~~~t~~~~rN~~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~g----q---- 94 (1283)
T KOG3542|consen 23 PPHLRTPDDIRNVYEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVEG----Q---- 94 (1283)
T ss_pred CcccCChhhhhhHHHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEeec----c----
Confidence 44444333333334567778889999999999999999999999999999999999999999999986532 1
Q ss_pred EEEeeCCCCeeechhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCH
Q 035714 531 NSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEA 578 (731)
Q Consensus 531 ~~~~l~~Gd~fGe~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~ 578 (731)
++-|-..||... ++ .|+.++-.++++|..+++.
T Consensus 95 ---i~mp~~~fgkr~------g~------~r~~nclllq~semivid~ 127 (1283)
T KOG3542|consen 95 ---IYMPYGCFGKRT------GQ------NRTHNCLLLQESEMIVIDY 127 (1283)
T ss_pred ---eecCcccccccc------cc------ccccceeeecccceeeeec
Confidence 334444566551 11 3778888888888888843
No 47
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=85.61 E-value=0.22 Score=55.44 Aligned_cols=48 Identities=15% Similarity=0.164 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhhcccccCccccCchhhH--------HHHHHHHHHHHHHHHHHH
Q 035714 339 RKILYCLWWGLRTLSSYAQELDTSIYVEEN--------LLAIFICILGSVLFALLI 386 (731)
Q Consensus 339 ~~Y~~slyw~l~tlstvG~gd~~~~~~~E~--------~f~i~i~i~G~ilfa~lI 386 (731)
--|+.|+|+++.++||+|+||+.|.+.... .+..+..++|...++.+.
T Consensus 241 w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 241 WSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 467889999999999999999999987755 678888888998888877
No 48
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=80.22 E-value=21 Score=46.51 Aligned_cols=46 Identities=15% Similarity=0.373 Sum_probs=33.5
Q ss_pred CcchhhhhHHHHHHHHHHHHHHhhheeeecCCCCccCCCeEeecHHHHHHHHhhh-hhHHHHHhhCC
Q 035714 110 TGFLITVFRTVADLFFVFNIFMKFRTAFVSPSSRSFGRGELVMDAREIRSRYFKT-DFVIDLAAALP 175 (731)
Q Consensus 110 ~~~~~~~~~~i~d~~f~lDi~l~f~Tay~~~~s~~~~~G~lV~d~~~Ia~~Ylks-~F~iDlls~lP 175 (731)
....+...+.++-.+|.+.|+++.-. | |... |+++ |.++|++-+.-
T Consensus 870 ~~~~L~y~D~~Ft~iFt~Em~lK~ia-~----------Gf~~---------y~rn~w~~lDf~Vv~v 916 (1592)
T KOG2301|consen 870 INGILEYADYIFTYIFTFEMLLKWIA-Y----------GFFF---------YFRNAWNWLDFVVVIV 916 (1592)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH-h----------HHHH---------HHhhHHhhhhHHHhhh
Confidence 34456777889999999999998552 1 3221 9998 99999887554
No 49
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=75.31 E-value=52 Score=39.66 Aligned_cols=92 Identities=14% Similarity=0.253 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cHHHHHHHHH-------HHHHHHHHHh--------------CC
Q 035714 366 EENLLAIFICILGSVLFALLIGNMQTYFQSM------SVRIEEWRIK-------RRDTEEWMRH--------------RQ 418 (731)
Q Consensus 366 ~E~~f~i~i~i~G~ilfa~lIg~~~~~l~~~------~~~~~e~~~k-------~~~~~~~m~~--------------~~ 418 (731)
.-++++++-+++...+++-+-.-+|..-... ....++|..+ ++.+.+|+.+ ++
T Consensus 324 Fsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~ 403 (727)
T KOG0498|consen 324 FSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQS 403 (727)
T ss_pred HHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHh
Confidence 4456666667777777776666555544322 1223333111 2233333332 57
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCHHHHHhhCChhhHHHHHHHH
Q 035714 419 LPPDLQERVHQFVQYKWLATRGVNEESILRSLPVDLRREIQRHL 462 (731)
Q Consensus 419 Lp~~L~~RV~~y~~y~w~~~~g~~e~~ll~~LP~~Lr~dI~~~l 462 (731)
||++||..|.+|+.+.-.+ .--+++..++.+-..|...+
T Consensus 404 LP~~LR~dI~~hL~~~lv~-----~vpLF~~md~~~L~al~~rl 442 (727)
T KOG0498|consen 404 LPKDLRRDIKRHLCLDLVR-----KVPLFAGMDDGLLDALCSRL 442 (727)
T ss_pred CCHHHHHHHHHHHhHHHHh-----hCchhhcCCHHHHHHHHHHh
Confidence 9999999999999877543 23466666666666665554
No 50
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=69.57 E-value=16 Score=35.33 Aligned_cols=74 Identities=12% Similarity=0.266 Sum_probs=47.1
Q ss_pred EEEEe-cCCCEE-EcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeeechhHhhhcCCCCCCCCCCcccEEE
Q 035714 489 VSSLS-IKGTYI-VREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVR 566 (731)
Q Consensus 489 ~~~~~-~~ge~I-~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~ll~al~~~~~~~~p~s~~tv~ 566 (731)
+...+ .||+-- +... ..++++++++|.+.+...++|+.. ...+++||+|=- |.. -..+-+
T Consensus 30 ~v~~vgGpn~R~d~H~~-~tdE~FyqleG~~~l~v~d~g~~~---~v~L~eGd~flv--------P~g------vpHsP~ 91 (159)
T TIGR03037 30 MVTVVGGPNARTDFHDD-PGEEFFYQLKGEMYLKVTEEGKRE---DVPIREGDIFLL--------PPH------VPHSPQ 91 (159)
T ss_pred EEEEeCCCCCCcccccC-CCceEEEEEcceEEEEEEcCCcEE---EEEECCCCEEEe--------CCC------CCcccc
Confidence 44444 444332 4443 379999999999999887776533 348999998732 221 223344
Q ss_pred EcceeEEEEeCHHH
Q 035714 567 AVTEVEAFALEAED 580 (731)
Q Consensus 567 Alt~~ell~L~~~d 580 (731)
+.++|.++.+.+..
T Consensus 92 r~~~t~~LvIE~~r 105 (159)
T TIGR03037 92 RPAGSIGLVIERKR 105 (159)
T ss_pred cCCCcEEEEEEeCC
Confidence 55777887776653
No 51
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=64.89 E-value=11 Score=30.37 Aligned_cols=45 Identities=22% Similarity=0.377 Sum_probs=33.0
Q ss_pred EEecCCCEEEcCCCCcC-eEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeee
Q 035714 491 SLSIKGTYIVREGDPVN-EMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCG 542 (731)
Q Consensus 491 ~~~~~ge~I~~eGd~~~-~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 542 (731)
..++||+..-..-.+.. ++++|++|.+.+. .+ |+ ...+++||.+=
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~-~~-~~-----~~~l~~Gd~~~ 48 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLT-VD-GE-----RVELKPGDAIY 48 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEE-ET-TE-----EEEEETTEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEE-Ec-cE-----EeEccCCEEEE
Confidence 46788887666666666 9999999999988 33 33 33788998763
No 52
>COG4709 Predicted membrane protein [Function unknown]
Probab=64.74 E-value=35 Score=33.76 Aligned_cols=72 Identities=18% Similarity=0.244 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHh--cCCCHHHHHhhC--ChhhHHHHHHHHHHHHHhcCCcCCcchHH
Q 035714 406 KRRDTEEWMRHRQLPPDLQERVHQFVQYKWLAT--RGVNEESILRSL--PVDLRREIQRHLCIALVRRVPFFSQMDDQ 479 (731)
Q Consensus 406 k~~~~~~~m~~~~Lp~~L~~RV~~y~~y~w~~~--~g~~e~~ll~~L--P~~Lr~dI~~~l~~~ll~~vp~F~~ls~~ 479 (731)
-++++++|+ +.||++.++.+..||+-.+.+. .|.+|+++..+| |.++-.|+....-.+-...-|-+.+....
T Consensus 6 fL~eL~~yL--~~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~a 81 (195)
T COG4709 6 FLNELEQYL--EGLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRRA 81 (195)
T ss_pred HHHHHHHHH--HhCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHHH
Confidence 356677887 4899999999998888777754 467899999977 77888888877766666666666665543
No 53
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=62.90 E-value=11 Score=34.04 Aligned_cols=45 Identities=31% Similarity=0.501 Sum_probs=34.6
Q ss_pred CCCChHHHHHHHHHHHHHHHH----------hcCCCHHHHHhhCChhhHHHHHHH
Q 035714 417 RQLPPDLQERVHQFVQYKWLA----------TRGVNEESILRSLPVDLRREIQRH 461 (731)
Q Consensus 417 ~~Lp~~L~~RV~~y~~y~w~~----------~~g~~e~~ll~~LP~~Lr~dI~~~ 461 (731)
.-||+++|..|..++.-.-.. ....|...++..||++||++|...
T Consensus 51 ~ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 51 AALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred HhCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 358999999999988655332 123456889999999999999754
No 54
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=59.13 E-value=55 Score=32.21 Aligned_cols=56 Identities=23% Similarity=0.443 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH--hcCCCHHHHHhhC--ChhhHHHHHHHH
Q 035714 405 IKRRDTEEWMRHRQLPPDLQERVHQFVQYKWLA--TRGVNEESILRSL--PVDLRREIQRHL 462 (731)
Q Consensus 405 ~k~~~~~~~m~~~~Lp~~L~~RV~~y~~y~w~~--~~g~~e~~ll~~L--P~~Lr~dI~~~l 462 (731)
+=+++++++++ ++|++-++.+.+||+-...+ ..|.+|+++.++| |.++-+++..+.
T Consensus 5 efL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 5 EFLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 34566778886 59999999999999888775 4577899999987 777777777554
No 55
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=56.61 E-value=30 Score=34.05 Aligned_cols=70 Identities=11% Similarity=0.210 Sum_probs=46.2
Q ss_pred cCCC-EEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeeechhHhhhcCCCCCCCCCCcccEEEEcceeE
Q 035714 494 IKGT-YIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVE 572 (731)
Q Consensus 494 ~~ge-~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~ll~al~~~~~~~~p~s~~tv~Alt~~e 572 (731)
.||+ .-++- ++.++++++++|.+.+...++|+.. ...+.+||+|=- |.. -..+-++..+|.
T Consensus 42 Gpn~r~d~H~-~~tdE~FyqleG~~~l~v~d~g~~~---~v~L~eGd~fll--------P~g------vpHsP~r~~~tv 103 (177)
T PRK13264 42 GPNARTDFHY-DPGEEFFYQLEGDMYLKVQEDGKRR---DVPIREGEMFLL--------PPH------VPHSPQREAGSI 103 (177)
T ss_pred cCCccccccc-CCCceEEEEECCeEEEEEEcCCcee---eEEECCCCEEEe--------CCC------CCcCCccCCCeE
Confidence 5553 33333 5679999999999999888776533 347899998732 221 122334567888
Q ss_pred EEEeCHHHH
Q 035714 573 AFALEAEDL 581 (731)
Q Consensus 573 ll~L~~~df 581 (731)
.+.+.+..-
T Consensus 104 ~LviE~~r~ 112 (177)
T PRK13264 104 GLVIERKRP 112 (177)
T ss_pred EEEEEeCCC
Confidence 888876543
No 56
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=55.86 E-value=2.4e+02 Score=34.06 Aligned_cols=73 Identities=21% Similarity=0.378 Sum_probs=52.6
Q ss_pred cccccCccccCc------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH-HHHHHHHHHHHHHHHhCCCChHHHH
Q 035714 353 SSYAQELDTSIY------VEENLLAIFICILGSVLFALLIGNMQTYFQSMSVRI-EEWRIKRRDTEEWMRHRQLPPDLQE 425 (731)
Q Consensus 353 stvG~gd~~~~~------~~E~~f~i~i~i~G~ilfa~lIg~~~~~l~~~~~~~-~e~~~k~~~~~~~m~~~~Lp~~L~~ 425 (731)
.|+|+||..... ..-.+|.+++.+..+.++-++|+.|+.-........ ++|+.+...+ =.|-.+.+|+.++.
T Consensus 601 ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~A~~-iL~lErs~p~~~r~ 679 (782)
T KOG3676|consen 601 FTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQWAAT-ILMLERSLPPALRK 679 (782)
T ss_pred HhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHH-HHHHHhcCCHHHHH
Confidence 468888755432 346678888888888889999999998887766555 6777665554 34556788888877
Q ss_pred H
Q 035714 426 R 426 (731)
Q Consensus 426 R 426 (731)
|
T Consensus 680 ~ 680 (782)
T KOG3676|consen 680 R 680 (782)
T ss_pred H
Confidence 6
No 57
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=53.53 E-value=85 Score=29.12 Aligned_cols=69 Identities=16% Similarity=0.180 Sum_probs=42.5
Q ss_pred EEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeeechhHhhhcCCCCCCCCCCcccEEEEc
Q 035714 489 VSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRAV 568 (731)
Q Consensus 489 ~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~ll~al~~~~~~~~p~s~~tv~Al 568 (731)
....+.||..+-..-....++++|++|.+.+...++|+ ...+.+||.+--.+ + ....+++.
T Consensus 38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~-----~~~L~aGD~i~~~~-------~-------~~H~~~N~ 98 (125)
T PRK13290 38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGE-----VHPIRPGTMYALDK-------H-------DRHYLRAG 98 (125)
T ss_pred EEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCE-----EEEeCCCeEEEECC-------C-------CcEEEEcC
Confidence 34577888754332222347999999999987333344 34789999875431 1 23445555
Q ss_pred ceeEEEEe
Q 035714 569 TEVEAFAL 576 (731)
Q Consensus 569 t~~ell~L 576 (731)
++++++.+
T Consensus 99 e~~~~l~v 106 (125)
T PRK13290 99 EDMRLVCV 106 (125)
T ss_pred CCEEEEEE
Confidence 77777665
No 58
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=53.11 E-value=5e+02 Score=31.56 Aligned_cols=44 Identities=27% Similarity=0.478 Sum_probs=30.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHH
Q 035714 364 YVEENLLAIFICILGSVLFALLIGNMQTYFQSMSVR-IEEWRIKR 407 (731)
Q Consensus 364 ~~~E~~f~i~i~i~G~ilfa~lIg~~~~~l~~~~~~-~~e~~~k~ 407 (731)
..+-.+|.++..+.-+++.=++|+.|....+..... .++|+-.+
T Consensus 586 ~~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~v~~~~~~~wk~~r 630 (743)
T TIGR00870 586 FVGLLLFGAYNVIMYILLLNMLIAMMGNTYQLIADDADEEWKFQR 630 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHH
Confidence 356777888888888888888888888888765443 44454333
No 59
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=51.29 E-value=1e+02 Score=34.70 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=17.1
Q ss_pred ecHHHHHHHHhhh-hhHHHHHhhC
Q 035714 152 MDAREIRSRYFKT-DFVIDLAAAL 174 (731)
Q Consensus 152 ~d~~~Ia~~Ylks-~F~iDlls~l 174 (731)
.+-++..++|+++ |-++|++.++
T Consensus 230 ~~i~~~g~~y~~~~WN~~e~~ii~ 253 (425)
T PF08016_consen 230 KKIRREGRAYFKSFWNWLELLIIL 253 (425)
T ss_pred HHHHHhhhHHhhhcCcHHHHHHHH
Confidence 3445556889998 8899988765
No 60
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=42.67 E-value=33 Score=31.94 Aligned_cols=74 Identities=12% Similarity=0.180 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhhcccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhC
Q 035714 338 YRKILYCLWWGLRTLSSYAQELDTSIYVEENLLAIFICILGSVLFALLIGNMQTYFQSMSVRIEEWRIKRRDTEEWMRHR 417 (731)
Q Consensus 338 ~~~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~ilfa~lIg~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~ 417 (731)
......++|..+.++.. +.+...|.....+++.++..++++++.+.-.|++..++..-. .....+.+++..++.
T Consensus 42 ~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~-----~~~~i~sl~dL~~~~ 115 (148)
T PF00060_consen 42 RFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVPK-----YEPPIDSLEDLANSG 115 (148)
T ss_dssp HHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----HTSS-SSHHHHHTHS
T ss_pred cccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-----cCCCCCCHHHHHHCC
Confidence 44566788888777765 445688999999999999999999999999999999986332 222344455555444
No 61
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=42.26 E-value=2.2e+02 Score=28.51 Aligned_cols=58 Identities=22% Similarity=0.376 Sum_probs=38.2
Q ss_pred hCChhhHHHHHHHHHHHHHhcCCcCC-cchHHHHHHHHhhcEEEE--ecCCCEEEcCCCCcC
Q 035714 449 SLPVDLRREIQRHLCIALVRRVPFFS-QMDDQLLDAICQRLVSSL--SIKGTYIVREGDPVN 507 (731)
Q Consensus 449 ~LP~~Lr~dI~~~l~~~ll~~vp~F~-~ls~~~l~~L~~~l~~~~--~~~ge~I~~eGd~~~ 507 (731)
.+|++ .+.+...+...+++---.|. ..++...........+.. +.+|+.|+++|+..+
T Consensus 147 ~~~~~-~~~~~~~l~~~~i~PNl~~d~~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 147 NLPSE-LRELLKELLSNFIRPNLIYDEEATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred CCCHH-HHHHHHHHHHhcCCchhhcCHHHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 45555 33344444444333222333 467778888888889987 999999999999765
No 62
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=41.45 E-value=1.1e+02 Score=24.28 Aligned_cols=46 Identities=13% Similarity=0.248 Sum_probs=24.1
Q ss_pred hHHHHH---HHHHHHHHHHHHHHHHHHHHHHhccHH---HHHHHHHHHHHHHHHH
Q 035714 367 ENLLAI---FICILGSVLFALLIGNMQTYFQSMSVR---IEEWRIKRRDTEEWMR 415 (731)
Q Consensus 367 E~~f~i---~i~i~G~ilfa~lIg~~~~~l~~~~~~---~~e~~~k~~~~~~~m~ 415 (731)
..++.+ .+.+++.+.|+.+ +-.++++.+.+ ..++.+|++.+-+.+.
T Consensus 5 ~~Iy~~~Vi~l~vl~~~~Ftl~---IRri~~~s~~kkq~~~~~eqKLDrIIeLLE 56 (58)
T PF13314_consen 5 DLIYYILVIILIVLFGASFTLF---IRRILINSNAKKQDVDSMEQKLDRIIELLE 56 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHhccccccchhHHHHHHHHHHHHHc
Confidence 344555 3344444445443 44455543322 2358888888776653
No 63
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=39.78 E-value=54 Score=27.26 Aligned_cols=43 Identities=16% Similarity=0.352 Sum_probs=29.1
Q ss_pred EecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeee
Q 035714 492 LSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCG 542 (731)
Q Consensus 492 ~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 542 (731)
...||..-..-. .+++.+|++|.+.+... +|. ...+++||.|-
T Consensus 13 ~~~pg~~~~~~~--~~E~~~vleG~v~it~~-~G~-----~~~~~aGD~~~ 55 (74)
T PF05899_consen 13 ECTPGKFPWPYP--EDEFFYVLEGEVTITDE-DGE-----TVTFKAGDAFF 55 (74)
T ss_dssp EEECEEEEEEES--SEEEEEEEEEEEEEEET-TTE-----EEEEETTEEEE
T ss_pred EECCceeEeeCC--CCEEEEEEEeEEEEEEC-CCC-----EEEEcCCcEEE
Confidence 345565444332 28999999999998764 444 23789999874
No 64
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=36.08 E-value=1.5e+02 Score=32.91 Aligned_cols=60 Identities=17% Similarity=0.159 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHhhcccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 035714 338 YRKILYCLWWGLRTLSSYAQELDTSIYVEENLLAIFICILGSVLFALLIGNMQTYFQSMS 397 (731)
Q Consensus 338 ~~~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~ilfa~lIg~~~~~l~~~~ 397 (731)
.--|+.++-+++..+.+++.+.....-..-..+++++.++++++|-+.|.++...++-.+
T Consensus 98 Lg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iqv~~ 157 (371)
T PF10011_consen 98 LGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSIQVSN 157 (371)
T ss_pred HHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 445667777777777776666542222233888889999999999999999988886433
No 65
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=35.63 E-value=1.2e+02 Score=28.56 Aligned_cols=54 Identities=19% Similarity=0.296 Sum_probs=37.5
Q ss_pred cEEEEecCCCEEEcCCCC-cCeEEEEEeeEEEEEEecC-CcceEEEEEeeCCCCeeec
Q 035714 488 LVSSLSIKGTYIVREGDP-VNEMLFIIRGTLESSTTNG-GRDGFFNSITLQPGDFCGE 543 (731)
Q Consensus 488 l~~~~~~~ge~I~~eGd~-~~~myfI~~G~v~v~~~~~-g~~~~~~~~~l~~Gd~fGe 543 (731)
+....+.||...-..-.+ ..++++|++|...+...+. |++.. ...+.+||.+-.
T Consensus 32 ~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~--~~~l~~GD~~~i 87 (146)
T smart00835 32 AARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVY--DARLREGDVFVV 87 (146)
T ss_pred EEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEE--EEEecCCCEEEE
Confidence 445678888876544433 5789999999999887553 33333 347899998744
No 66
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=35.26 E-value=9.5e+02 Score=29.66 Aligned_cols=41 Identities=10% Similarity=0.219 Sum_probs=30.0
Q ss_pred CCCChHHHHHHHHHHHHHHHHhcCCCHHHHHhhCChhhHHHHHHHH
Q 035714 417 RQLPPDLQERVHQFVQYKWLATRGVNEESILRSLPVDLRREIQRHL 462 (731)
Q Consensus 417 ~~Lp~~L~~RV~~y~~y~w~~~~g~~e~~ll~~LP~~Lr~dI~~~l 462 (731)
.+||+.||..|..+...... ..-.+++.++++...++...+
T Consensus 357 ~~Lp~~Lr~~i~~~l~~~~l-----~~~~lF~~~s~~~l~~L~~~~ 397 (823)
T PLN03192 357 DQLPKSICKSICQHLFLPVV-----EKVYLFKGVSREILLLLVTKM 397 (823)
T ss_pred HHcCHHHHHHHHHHHHHHHH-----hhCcchhcCCHHHHHHHHHhh
Confidence 47899999999877754432 334578888988887777665
No 67
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=33.66 E-value=1.1e+02 Score=28.33 Aligned_cols=48 Identities=19% Similarity=0.347 Sum_probs=34.8
Q ss_pred hcEEEEecCCCEE-EcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCee
Q 035714 487 RLVSSLSIKGTYI-VREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFC 541 (731)
Q Consensus 487 ~l~~~~~~~ge~I-~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~f 541 (731)
.++...++||+-+ .+--...+++|+|++|...+... ++ ...+++||.+
T Consensus 37 ~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~--~~-----~~~v~~gd~~ 85 (127)
T COG0662 37 SIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG--GE-----EVEVKAGDSV 85 (127)
T ss_pred EEEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC--CE-----EEEecCCCEE
Confidence 3566788888875 44445579999999999988764 33 3367888765
No 68
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=32.97 E-value=3.3e+02 Score=36.16 Aligned_cols=98 Identities=29% Similarity=0.349 Sum_probs=51.4
Q ss_pred hhhhhHHHHHHHHHHHHHHhhheeeecCCCCccCCCeEeecHHHHHHHHhhh-hhHHHHHhhCChhHHHHHhhccCCCCc
Q 035714 113 LITVFRTVADLFFVFNIFMKFRTAFVSPSSRSFGRGELVMDAREIRSRYFKT-DFVIDLAAALPLPQFVVFLIIPSMRDS 191 (731)
Q Consensus 113 ~~~~~~~i~d~~f~lDi~l~f~Tay~~~~s~~~~~G~lV~d~~~Ia~~Ylks-~F~iDlls~lPl~~i~~~~~~~~~~~~ 191 (731)
...+.+.++-.+|..++.+..-. .++ +.|.++ |.++|.+-+. +..+ +.. + .
T Consensus 474 ~l~~~~~vF~~lF~~Em~~ki~a--l~~------------------~~yF~~~~n~fD~~iv~-l~~~--~~~-~--~-- 525 (1592)
T KOG2301|consen 474 LLYLGNVVFTGLFTVEMILKIYA--LGP------------------RNYFRRGWNIFDLIIVL-LSLL--ELL-L--K-- 525 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--cCc------------------HHHHhhhcchheEEEEe-hhhH--Hhc-c--c--
Confidence 44555666777777787776431 111 357766 8888988777 4432 222 1 1
Q ss_pred ccccchhHHHHHHHHHhhhhhhhhcccccchhhccchhhhhhHHHHHHHHHHHH
Q 035714 192 KADYNNSSLALVILLQYIPRLFVIFPLNGRIIKTTGVVAKADWAGAGYNLVLFL 245 (731)
Q Consensus 192 ~~~~~~~~L~li~llqyl~Rl~ri~~l~~~i~~~~~~~~~~~~~~~~~~lll~~ 245 (731)
......+||.+++++ +.|+.+..+..+.+.+..+. -.+++.+|++++
T Consensus 526 -~~~g~svLr~frllR-Ifkl~k~wp~l~~lv~~i~n-----s~~~l~~L~l~l 572 (1592)
T KOG2301|consen 526 -NVYGLSVLRSFRLLR-IFKLIKSWPTLNDLVKSIFN-----SGKALGNLVLFL 572 (1592)
T ss_pred -chHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHhcc-----cHHHHHHHHHHH
Confidence 112334555555554 55555555555555443322 123455555443
No 69
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=32.79 E-value=1.2e+03 Score=30.23 Aligned_cols=55 Identities=24% Similarity=0.437 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH-H-HHHHHHHHHHHHhCCCChHH
Q 035714 369 LLAIFICILGSVLFALLIGNMQTYFQSMSVRIEE-W-RIKRRDTEEWMRHRQLPPDL 423 (731)
Q Consensus 369 ~f~i~i~i~G~ilfa~lIg~~~~~l~~~~~~~~e-~-~~k~~~~~~~m~~~~Lp~~L 423 (731)
+.++++.+.-+++.-++|+.+....+.......+ | -++.+.+.+|=..--||+++
T Consensus 1018 Ll~~yLLv~nILL~NLLIA~Fn~tf~~v~~~sd~iWkFQRY~limeyh~rP~LPPPf 1074 (1381)
T KOG3614|consen 1018 LLVIYLLVTNILLVNLLIAMFSYTFGNVQENSDQIWKFQRYSLIMEYHSRPALPPPF 1074 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCCc
Confidence 4555555566666666666666666554443333 2 35666777776666677765
No 70
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=31.40 E-value=1.2e+02 Score=27.98 Aligned_cols=50 Identities=18% Similarity=0.233 Sum_probs=39.9
Q ss_pred cEEEEecCCCEEEcCCCC-cCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeeech
Q 035714 488 LVSSLSIKGTYIVREGDP-VNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCGEE 544 (731)
Q Consensus 488 l~~~~~~~ge~I~~eGd~-~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~ 544 (731)
.....+.||..+-.--.+ .+...+|++|.+++... |. ...+.+||++-..
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~--g~-----~~~l~~Gd~i~ip 95 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE--GE-----KKELKAGDVIIIP 95 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEec--CC-----ceEecCCCEEEEC
Confidence 446788999988877777 77999999999998775 33 3378999998765
No 71
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=31.26 E-value=1e+02 Score=27.76 Aligned_cols=49 Identities=27% Similarity=0.324 Sum_probs=31.9
Q ss_pred CCChHHHHHHHHHHHHHHHHh---------cCC---C-HHHHHhhCChhhHHHHHHHHHHHH
Q 035714 418 QLPPDLQERVHQFVQYKWLAT---------RGV---N-EESILRSLPVDLRREIQRHLCIAL 466 (731)
Q Consensus 418 ~Lp~~L~~RV~~y~~y~w~~~---------~g~---~-e~~ll~~LP~~Lr~dI~~~l~~~l 466 (731)
-||+++|..|..-....-... .+. + ..++|..||++||.+|........
T Consensus 8 aLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~I~pefL~ALP~diR~EVl~qe~~~~ 69 (108)
T PF14377_consen 8 ALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQIDPEFLAALPPDIREEVLAQERRER 69 (108)
T ss_pred HCCHHHHHHHHHHHHhhccchhcccCcccccCCCccccCHHHHHhCCHHHHHHHHHHHHHHH
Confidence 489999999854443321100 000 0 268999999999999997765443
No 72
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=27.77 E-value=60 Score=37.59 Aligned_cols=72 Identities=8% Similarity=0.217 Sum_probs=52.9
Q ss_pred HHHHHHHHHhhcccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhCCC
Q 035714 342 LYCLWWGLRTLSSYAQELDTSIYVEENLLAIFICILGSVLFALLIGNMQTYFQSMSVRIEEWRIKRRDTEEWMRHRQL 419 (731)
Q Consensus 342 ~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~ilfa~lIg~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~L 419 (731)
+.|||+++.....-|. |+.|.....++..-+.-++-+++.+--.+|++..|. .|.|..-++.+|+.-++..+
T Consensus 597 fNsLWFsLgAFMQQG~-DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLT-----vErMvsPIESaEDLAkQteI 668 (897)
T KOG1054|consen 597 FNSLWFSLGAFMQQGC-DISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT-----VERMVSPIESAEDLAKQTEI 668 (897)
T ss_pred hHHHHHHHHHHHhcCC-CCCccccccceeccchhhhhhhhhhhhhhHHHHHHh-----HHhhcCcchhHHHHhhccee
Confidence 3699999999987665 999999999998888888887777777777777664 45555555556655554443
No 73
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=26.21 E-value=2.3e+02 Score=24.31 Aligned_cols=64 Identities=20% Similarity=0.272 Sum_probs=44.2
Q ss_pred hcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeeechhHhhhcCCCCCCCCCCcccEEE
Q 035714 487 RLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVR 566 (731)
Q Consensus 487 ~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~ll~al~~~~~~~~p~s~~tv~ 566 (731)
......+.||..+=.....+.+..||++|.+.- +++ .+.+|++.=... .+..+..
T Consensus 25 ~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d---~~~--------~~~~G~~~~~p~--------------g~~h~~~ 79 (91)
T PF12973_consen 25 RVSLLRLEPGASLPRHRHPGGEEILVLEGELSD---GDG--------RYGAGDWLRLPP--------------GSSHTPR 79 (91)
T ss_dssp EEEEEEE-TTEEEEEEEESS-EEEEEEECEEEE---TTC--------EEETTEEEEE-T--------------TEEEEEE
T ss_pred EEEEEEECCCCCcCccCCCCcEEEEEEEEEEEE---CCc--------cCCCCeEEEeCC--------------CCccccC
Confidence 345678889988887777888889999999862 222 458888864431 3567788
Q ss_pred EcceeEEEE
Q 035714 567 AVTEVEAFA 575 (731)
Q Consensus 567 Alt~~ell~ 575 (731)
+.+.|.++.
T Consensus 80 s~~gc~~~v 88 (91)
T PF12973_consen 80 SDEGCLILV 88 (91)
T ss_dssp ESSCEEEEE
T ss_pred cCCCEEEEE
Confidence 888888875
No 74
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=25.41 E-value=2.4e+02 Score=26.95 Aligned_cols=46 Identities=17% Similarity=0.446 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-------------cHHHHHHHHHHHHHHHHHHh
Q 035714 371 AIFICILGSVLFALLIGNMQTYFQSM-------------SVRIEEWRIKRRDTEEWMRH 416 (731)
Q Consensus 371 ~i~i~i~G~ilfa~lIg~~~~~l~~~-------------~~~~~e~~~k~~~~~~~m~~ 416 (731)
.+++.++|+.+||++++-+...-... ....++|+.+++..++.++.
T Consensus 9 ~lLi~vIglAL~aFIv~d~~~~~~~~~~~~~~VG~VnGe~Is~~ef~~~v~~~~~~~k~ 67 (145)
T PF13623_consen 9 GLLIIVIGLALFAFIVGDFRSGSGFFGSSQNVVGEVNGEKISYQEFQQRVEQATENYKQ 67 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcCCCCCeeEeECCEEcCHHHHHHHHHHHHHHHHH
Confidence 36788999999999998763322111 24578899999988866653
No 75
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=24.77 E-value=2.4e+02 Score=27.24 Aligned_cols=50 Identities=32% Similarity=0.535 Sum_probs=33.1
Q ss_pred cCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeeechhHhhhcCCCCCCCCCCcccEEEEcceeEEEEe
Q 035714 506 VNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFAL 576 (731)
Q Consensus 506 ~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L 576 (731)
.+++.+|++|.+.+. .+|+ ....++||.+ +.|+. ++.+..+-..+.++..
T Consensus 95 YDEi~~VlEG~L~i~--~~G~-----~~~A~~GDvi--------~iPkG------s~I~fst~~~a~~~Yv 144 (152)
T PF06249_consen 95 YDEIKYVLEGTLEIS--IDGQ-----TVTAKPGDVI--------FIPKG------STITFSTPDYARFFYV 144 (152)
T ss_dssp SEEEEEEEEEEEEEE--ETTE-----EEEEETT-EE--------EE-TT-------EEEEEEEEEEEEEEE
T ss_pred cceEEEEEEeEEEEE--ECCE-----EEEEcCCcEE--------EECCC------CEEEEecCCCEEEEEE
Confidence 588999999999886 3355 3367999986 33332 5666766667777665
No 76
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=24.16 E-value=3.2e+02 Score=20.63 Aligned_cols=42 Identities=10% Similarity=0.233 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 035714 369 LLAIFICILGSVLFALLIGNMQTYFQSMSVRIEEWRIKRRDT 410 (731)
Q Consensus 369 ~f~i~i~i~G~ilfa~lIg~~~~~l~~~~~~~~e~~~k~~~~ 410 (731)
.++.+..+..++....+...++++-.....+.+++|..-+++
T Consensus 8 ~~s~~ai~~~l~~~p~i~~~i~~~~~~~~~em~~fk~~s~d~ 49 (53)
T PF01484_consen 8 VVSTVAILSCLITVPSIYNDIQNFQSELDDEMEEFKEISDDA 49 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555566667777777777777777777776665
No 77
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=23.25 E-value=3.4e+02 Score=27.15 Aligned_cols=53 Identities=11% Similarity=0.094 Sum_probs=33.5
Q ss_pred cEEEEecCCCEE---------EcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeee
Q 035714 488 LVSSLSIKGTYI---------VREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCG 542 (731)
Q Consensus 488 l~~~~~~~ge~I---------~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 542 (731)
+-...+.||... +++.....++|+|++|...+...+...+.. ...+.+||.+-
T Consensus 70 ~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~--~~~v~pGd~v~ 131 (191)
T PRK04190 70 FGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEAR--WIEMEPGTVVY 131 (191)
T ss_pred EEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEE--EEEECCCCEEE
Confidence 345677777743 233333459999999999887654321221 34789999863
No 78
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=22.98 E-value=1e+03 Score=29.70 Aligned_cols=73 Identities=12% Similarity=0.255 Sum_probs=48.8
Q ss_pred HHHHHhhcccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------------------
Q 035714 346 WWGLRTLSSYAQELDTSIYVEENLLAIFICILGSVLFALLIGNMQTYFQSM----------------------------- 396 (731)
Q Consensus 346 yw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~ilfa~lIg~~~~~l~~~----------------------------- 396 (731)
-||+.--.||- ...|....-++...+.+++++++.|--.+|++..+-..
T Consensus 617 lwaLvFnnsVp--v~nPKgtTskiMv~VWAfFavifLAsYTANLAAfMIqE~~~d~vSGlsD~KfqrP~dq~PpFRFGTV 694 (1258)
T KOG1053|consen 617 LWALVFNNSVP--VENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEEYYDTVSGLSDPKFQRPHDQYPPFRFGTV 694 (1258)
T ss_pred HHHHHhCCCcC--CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCcccccCccccCCCcccccC
Confidence 46766555543 34566677889999999999999888888877654210
Q ss_pred --cHHHHHHHHHHHHHHHHHHhCCCC
Q 035714 397 --SVRIEEWRIKRRDTEEWMRHRQLP 420 (731)
Q Consensus 397 --~~~~~e~~~k~~~~~~~m~~~~Lp 420 (731)
.+-.+..|....++.+||++.+-|
T Consensus 695 pngSTE~niR~Nyp~MHeYM~kyNq~ 720 (1258)
T KOG1053|consen 695 PNGSTERNIRSNYPEMHEYMVKYNQP 720 (1258)
T ss_pred CCCchhhhHHhccHHHHHHHHHhccC
Confidence 122444566677788888775543
No 79
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=22.70 E-value=1.5e+02 Score=20.86 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhCCCCh-----HHHHHHHHHH
Q 035714 406 KRRDTEEWMRHRQLPP-----DLQERVHQFV 431 (731)
Q Consensus 406 k~~~~~~~m~~~~Lp~-----~L~~RV~~y~ 431 (731)
+..++.++++.++||. +|.+|+.+|+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 4567889999999985 7888888774
No 80
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=22.57 E-value=1.4e+02 Score=21.40 Aligned_cols=21 Identities=38% Similarity=0.599 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHhHHHh
Q 035714 609 TWASCFIQSAWRKFRKRKMAM 629 (731)
Q Consensus 609 ~~~~~~~q~a~~r~~~R~~~~ 629 (731)
..++.+||..|++.++|+...
T Consensus 9 ~YAt~lI~dyfr~~K~rk~~~ 29 (35)
T PF08763_consen 9 FYATLLIQDYFRQFKKRKEQE 29 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999988653
No 81
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=22.22 E-value=1.5e+03 Score=27.89 Aligned_cols=23 Identities=9% Similarity=-0.044 Sum_probs=16.1
Q ss_pred chhhhhHHHHHHHHHHHHHHhhh
Q 035714 112 FLITVFRTVADLFFVFNIFMKFR 134 (731)
Q Consensus 112 ~~~~~~~~i~d~~f~lDi~l~f~ 134 (731)
..+.++++++.++.++-+++.-.
T Consensus 498 s~wN~ld~~i~~ls~~~~~~~~~ 520 (798)
T KOG3599|consen 498 SKWNWLDLAIVLLSVVLLVLMIT 520 (798)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888777777766533
No 82
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=21.50 E-value=2.5e+02 Score=31.09 Aligned_cols=52 Identities=12% Similarity=0.111 Sum_probs=34.5
Q ss_pred EEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeee
Q 035714 489 VSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCG 542 (731)
Q Consensus 489 ~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 542 (731)
....+.||...----....++.+|++|.+++...+.+.+.+ ...+.+||.+=
T Consensus 70 ~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~--~~~L~~GD~~~ 121 (367)
T TIGR03404 70 VNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRNY--IDDVGAGDLWY 121 (367)
T ss_pred eEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcEE--EeEECCCCEEE
Confidence 44567777754322234568999999999998876422222 22689999873
No 83
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=20.68 E-value=1.4e+02 Score=18.26 Aligned_cols=17 Identities=47% Similarity=0.718 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHhHH
Q 035714 611 ASCFIQSAWRKFRKRKM 627 (731)
Q Consensus 611 ~~~~~q~a~~r~~~R~~ 627 (731)
++..||+.||.+..|+.
T Consensus 3 aai~iQ~~~R~~~~Rk~ 19 (21)
T PF00612_consen 3 AAIIIQSYWRGYLARKR 19 (21)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 56789999999988764
No 84
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=20.30 E-value=2.8e+02 Score=30.75 Aligned_cols=51 Identities=20% Similarity=0.244 Sum_probs=35.0
Q ss_pred cEEEEecCCCEEEcCCCC-cCeEEEEEeeEEEEEEec-CCcceEEEEEeeCCCCee
Q 035714 488 LVSSLSIKGTYIVREGDP-VNEMLFIIRGTLESSTTN-GGRDGFFNSITLQPGDFC 541 (731)
Q Consensus 488 l~~~~~~~ge~I~~eGd~-~~~myfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~f 541 (731)
+....+.||...-.-=.+ .+++++|++|.+++...+ +|+..+ ..+++||.+
T Consensus 247 ~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~---~~l~~GD~~ 299 (367)
T TIGR03404 247 AAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNART---FDYQAGDVG 299 (367)
T ss_pred EEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEE---EEECCCCEE
Confidence 456778888865433333 579999999999987654 333232 368999975
No 85
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=20.15 E-value=1.7e+02 Score=27.98 Aligned_cols=37 Identities=14% Similarity=0.307 Sum_probs=26.2
Q ss_pred CCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeeec
Q 035714 504 DPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCGE 543 (731)
Q Consensus 504 d~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 543 (731)
++++++++-.+|.+.+...++|+... ..+++|+.|=-
T Consensus 51 ne~eE~FyQ~kG~m~Lkv~e~g~~kd---i~I~EGe~fLL 87 (151)
T PF06052_consen 51 NETEEFFYQLKGDMCLKVVEDGKFKD---IPIREGEMFLL 87 (151)
T ss_dssp -SS-EEEEEEES-EEEEEEETTEEEE---EEE-TTEEEEE
T ss_pred CCcceEEEEEeCcEEEEEEeCCceEE---EEeCCCcEEec
Confidence 34669999999999888888776654 48999998843
Done!