Query 035714
Match_columns 731
No_of_seqs 440 out of 3069
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 09:11:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035714.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035714hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3beh_A MLL3241 protein; transm 100.0 1.5E-32 5E-37 299.5 14.9 186 338-598 159-344 (355)
2 3ukn_A Novel protein similar t 100.0 4.9E-31 1.7E-35 265.9 15.4 205 390-608 1-205 (212)
3 2ptm_A Hyperpolarization-activ 100.0 1.1E-29 3.6E-34 253.3 24.0 189 395-598 2-190 (198)
4 3bpz_A Potassium/sodium hyperp 100.0 1.3E-29 4.4E-34 253.7 21.8 188 394-597 2-189 (202)
5 1orq_C Potassium channel; volt 99.8 4.1E-20 1.4E-24 188.0 17.6 211 72-395 9-220 (223)
6 4f8a_A Potassium voltage-gated 99.8 1.6E-18 5.6E-23 165.1 16.9 142 444-598 6-147 (160)
7 2r9r_B Paddle chimera voltage 99.7 7.3E-17 2.5E-21 183.2 19.7 293 64-463 174-489 (514)
8 3gyd_A CNMP-BD protein, cyclic 99.7 1.3E-16 4.4E-21 157.3 18.3 153 442-605 12-169 (187)
9 3dn7_A Cyclic nucleotide bindi 99.7 1.5E-16 5E-21 157.0 16.1 149 464-638 6-155 (194)
10 3ocp_A PRKG1 protein; serine/t 99.7 1E-16 3.5E-21 149.5 12.6 131 449-594 7-137 (139)
11 3mdp_A Cyclic nucleotide-bindi 99.7 1.2E-16 4.2E-21 148.8 13.1 130 465-605 6-139 (142)
12 1wgp_A Probable cyclic nucleot 99.7 3.4E-17 1.2E-21 152.0 6.5 129 465-593 6-134 (137)
13 4ev0_A Transcription regulator 99.7 2.1E-15 7.1E-20 151.0 19.7 154 467-635 1-155 (216)
14 3idb_B CAMP-dependent protein 99.7 2.1E-16 7.3E-21 151.2 11.8 129 455-594 28-156 (161)
15 2pqq_A Putative transcriptiona 99.7 8.1E-16 2.8E-20 144.2 14.1 121 464-595 4-125 (149)
16 3fx3_A Cyclic nucleotide-bindi 99.6 1.5E-15 5E-20 154.6 15.1 126 463-599 9-135 (237)
17 2z69_A DNR protein; beta barre 99.6 2.5E-15 8.5E-20 141.8 15.3 125 464-598 11-136 (154)
18 3iwz_A CAP-like, catabolite ac 99.6 5.3E-15 1.8E-19 149.5 18.6 158 464-635 10-173 (230)
19 3e97_A Transcriptional regulat 99.6 3.8E-15 1.3E-19 151.0 17.5 156 464-636 5-162 (231)
20 3d0s_A Transcriptional regulat 99.6 2E-15 6.8E-20 152.6 15.2 157 464-635 5-162 (227)
21 3dv8_A Transcriptional regulat 99.6 5E-15 1.7E-19 148.6 17.8 156 465-635 3-161 (220)
22 1zyb_A Transcription regulator 99.6 2.4E-15 8.1E-20 153.1 13.7 126 463-598 16-144 (232)
23 3dkw_A DNR protein; CRP-FNR, H 99.6 3.3E-15 1.1E-19 150.7 13.7 158 464-635 8-166 (227)
24 1vp6_A CNBD, cyclic-nucleotide 99.6 6.2E-15 2.1E-19 136.7 13.8 122 463-601 9-130 (138)
25 2gau_A Transcriptional regulat 99.6 1.3E-14 4.3E-19 147.2 16.1 152 469-635 14-166 (232)
26 3ryp_A Catabolite gene activat 99.6 2.9E-14 9.9E-19 142.0 17.5 152 471-636 2-154 (210)
27 3pna_A CAMP-dependent protein 99.6 1.4E-14 4.8E-19 137.6 14.4 119 461-594 34-152 (154)
28 3shr_A CGMP-dependent protein 99.6 1.7E-14 5.8E-19 152.3 16.4 137 444-595 18-154 (299)
29 2fmy_A COOA, carbon monoxide o 99.6 1.7E-14 5.9E-19 145.1 13.8 150 465-636 4-153 (220)
30 2oz6_A Virulence factor regula 99.6 8.8E-14 3E-18 138.1 18.1 148 476-634 1-149 (207)
31 3kcc_A Catabolite gene activat 99.5 9.8E-14 3.3E-18 143.8 17.6 148 474-635 55-203 (260)
32 1ft9_A Carbon monoxide oxidati 99.5 2.5E-14 8.7E-19 144.2 12.7 148 466-635 1-148 (222)
33 4ava_A Lysine acetyltransferas 99.5 5.3E-14 1.8E-18 150.9 15.7 127 464-603 12-139 (333)
34 2d93_A RAP guanine nucleotide 99.5 5.8E-15 2E-19 136.7 6.1 124 451-589 2-127 (134)
35 1o5l_A Transcriptional regulat 99.5 1.1E-13 3.6E-18 138.9 13.9 143 470-638 4-147 (213)
36 2qcs_B CAMP-dependent protein 99.5 2.5E-13 8.4E-18 142.5 17.3 127 461-598 153-281 (291)
37 3shr_A CGMP-dependent protein 99.5 7E-14 2.4E-18 147.5 11.3 127 461-598 153-281 (299)
38 3of1_A CAMP-dependent protein 99.5 1.6E-13 5.4E-18 139.8 12.5 119 462-594 122-240 (246)
39 3tnp_B CAMP-dependent protein 99.5 3.2E-13 1.1E-17 149.9 15.0 129 455-594 135-263 (416)
40 2qcs_B CAMP-dependent protein 99.5 4.3E-13 1.5E-17 140.7 15.0 128 459-601 33-160 (291)
41 3of1_A CAMP-dependent protein 99.5 2.5E-13 8.5E-18 138.3 12.2 121 463-598 5-125 (246)
42 4din_B CAMP-dependent protein 99.4 2.3E-13 7.8E-18 149.3 10.9 128 461-599 244-373 (381)
43 3e6c_C CPRK, cyclic nucleotide 99.4 9.3E-13 3.2E-17 135.3 13.5 150 469-636 13-163 (250)
44 4din_B CAMP-dependent protein 99.4 9.6E-13 3.3E-17 144.3 13.4 128 458-600 123-250 (381)
45 2a9h_A Voltage-gated potassium 99.4 8.5E-13 2.9E-17 125.8 10.8 64 339-402 83-146 (155)
46 1o7f_A CAMP-dependent RAP1 gua 99.4 1.7E-12 5.8E-17 145.8 14.6 135 449-595 26-163 (469)
47 2bgc_A PRFA; bacterial infecti 99.4 8.1E-12 2.8E-16 127.3 18.3 146 475-635 3-153 (238)
48 3la7_A Global nitrogen regulat 99.4 4.2E-12 1.4E-16 129.9 16.0 146 478-636 30-179 (243)
49 3vou_A ION transport 2 domain 99.4 2.2E-12 7.5E-17 122.4 12.1 86 341-426 53-148 (148)
50 3tnp_B CAMP-dependent protein 99.4 1.3E-12 4.5E-17 145.0 12.1 122 463-595 265-393 (416)
51 1o7f_A CAMP-dependent RAP1 gua 99.4 2.1E-12 7.3E-17 145.0 12.6 123 459-595 331-455 (469)
52 4h33_A LMO2059 protein; bilaye 99.3 1.5E-12 5.1E-17 121.8 8.7 92 341-432 44-135 (137)
53 4f7z_A RAP guanine nucleotide 99.3 2.1E-11 7.1E-16 149.8 15.8 135 446-593 24-161 (999)
54 2ih3_C Voltage-gated potassium 99.3 1.5E-11 5.3E-16 112.6 10.4 57 340-396 61-117 (122)
55 3cf6_E RAP guanine nucleotide 99.2 3.6E-11 1.2E-15 141.2 12.0 133 444-591 12-146 (694)
56 3b02_A Transcriptional regulat 99.2 9.5E-11 3.2E-15 115.5 12.7 122 491-634 2-124 (195)
57 3eff_K Voltage-gated potassium 99.1 1.7E-10 5.9E-15 108.1 11.2 58 340-397 40-97 (139)
58 4f7z_A RAP guanine nucleotide 99.1 2.1E-10 7.3E-15 140.8 13.9 115 461-589 333-449 (999)
59 2zcw_A TTHA1359, transcription 99.1 2.2E-10 7.7E-15 113.3 10.8 128 485-635 2-132 (202)
60 3rvy_A ION transport protein; 99.1 5.3E-10 1.8E-14 117.5 12.7 61 338-398 178-244 (285)
61 2q67_A Potassium channel prote 98.9 5.8E-09 2E-13 94.1 12.0 61 341-401 50-110 (114)
62 3ouf_A Potassium channel prote 98.9 9.9E-09 3.4E-13 89.9 10.0 54 341-394 33-86 (97)
63 2k1e_A Water soluble analogue 98.8 1.2E-09 4E-14 96.9 2.6 58 340-397 40-97 (103)
64 3ldc_A Calcium-gated potassium 98.7 2.5E-08 8.6E-13 84.4 7.8 53 341-393 29-81 (82)
65 3pjs_K KCSA, voltage-gated pot 98.7 9.1E-10 3.1E-14 106.3 -1.9 63 340-402 67-129 (166)
66 1xl4_A Inward rectifier potass 98.5 1.3E-07 4.4E-12 99.7 9.1 55 340-394 82-136 (301)
67 3um7_A Potassium channel subfa 98.5 3.2E-07 1.1E-11 96.5 10.4 56 340-395 115-170 (309)
68 1p7b_A Integral membrane chann 98.5 1.1E-07 3.7E-12 101.4 5.9 56 341-396 97-152 (333)
69 2qks_A KIR3.1-prokaryotic KIR 98.4 8.5E-07 2.9E-11 94.2 10.2 56 340-395 78-133 (321)
70 3sya_A G protein-activated inw 98.3 2.6E-06 8.7E-11 90.7 10.5 57 341-397 92-150 (340)
71 4gx0_A TRKA domain protein; me 98.1 1.1E-05 3.6E-10 92.8 11.3 53 341-393 52-105 (565)
72 3ukm_A Potassium channel subfa 98.1 6.1E-06 2.1E-10 85.5 7.8 55 340-394 93-147 (280)
73 3ukm_A Potassium channel subfa 98.0 1.9E-05 6.3E-10 81.8 11.1 55 341-395 202-263 (280)
74 3spc_A Inward-rectifier K+ cha 98.0 2.3E-05 7.8E-10 83.5 11.9 57 340-396 94-152 (343)
75 3um7_A Potassium channel subfa 98.0 2.7E-06 9.1E-11 89.5 4.3 59 341-399 225-289 (309)
76 1lnq_A MTHK channels, potassiu 97.7 2.7E-06 9.1E-11 91.2 -2.2 55 341-395 46-100 (336)
77 4dxw_A Navrh, ION transport pr 97.5 0.00085 2.9E-08 67.5 13.4 56 340-395 165-225 (229)
78 2kyh_A KVAP, voltage-gated pot 97.0 0.00042 1.4E-08 65.0 4.3 78 72-179 22-99 (147)
79 1ors_C Potassium channel; volt 96.4 0.003 1E-07 58.0 5.1 77 72-178 7-83 (132)
80 2kxw_B Sodium channel protein 66.7 4.8 0.00017 25.9 2.9 19 608-626 5-23 (27)
81 2l53_B CAM, voltage-gated sodi 65.8 5.3 0.00018 26.6 3.0 20 608-627 5-24 (31)
82 3fjs_A Uncharacterized protein 60.5 35 0.0012 29.3 8.5 67 488-575 38-104 (114)
83 3rns_A Cupin 2 conserved barre 59.0 39 0.0013 33.0 9.6 68 488-576 39-106 (227)
84 2ozj_A Cupin 2, conserved barr 58.3 42 0.0014 28.4 8.7 66 490-576 42-107 (114)
85 3lwc_A Uncharacterized protein 54.1 33 0.0011 30.0 7.2 46 490-543 44-89 (119)
86 1yfu_A 3-hydroxyanthranilate-3 52.6 17 0.00058 34.4 5.2 35 505-542 54-88 (174)
87 1yhf_A Hypothetical protein SP 52.0 64 0.0022 27.1 8.8 68 488-576 42-109 (115)
88 2pfw_A Cupin 2, conserved barr 51.5 82 0.0028 26.4 9.4 68 488-576 36-103 (116)
89 3kg2_A Glutamate receptor 2; I 48.6 19 0.00064 42.2 6.2 54 340-394 563-616 (823)
90 2qnk_A 3-hydroxyanthranilate 3 42.4 57 0.0019 33.2 7.5 59 503-578 48-106 (286)
91 1zvf_A 3-hydroxyanthranilate 3 42.0 22 0.00076 33.5 4.2 37 505-542 53-91 (176)
92 2gu9_A Tetracenomycin polyketi 40.0 45 0.0016 27.7 5.8 48 488-542 23-73 (113)
93 1v70_A Probable antibiotics sy 39.1 50 0.0017 26.8 5.8 47 489-542 31-78 (105)
94 4e2g_A Cupin 2 conserved barre 38.9 46 0.0016 28.6 5.8 48 488-542 43-90 (126)
95 4axo_A EUTQ, ethanolamine util 38.2 82 0.0028 28.9 7.5 31 505-542 83-113 (151)
96 1dgw_A Canavalin; duplicated s 38.1 38 0.0013 31.8 5.4 52 488-542 43-94 (178)
97 1o5u_A Novel thermotoga mariti 37.8 83 0.0028 26.5 7.0 47 488-542 33-79 (101)
98 3h8u_A Uncharacterized conserv 36.4 54 0.0018 28.2 5.8 49 488-542 41-90 (125)
99 3d0j_A Uncharacterized protein 35.9 61 0.0021 29.4 6.0 63 501-578 45-109 (140)
100 2bnm_A Epoxidase; oxidoreducta 33.7 51 0.0017 31.0 5.5 50 490-542 121-173 (198)
101 3rns_A Cupin 2 conserved barre 31.7 1.2E+02 0.0041 29.4 8.0 68 488-576 155-223 (227)
102 3bcw_A Uncharacterized protein 30.6 41 0.0014 29.7 3.9 47 491-544 54-100 (123)
103 3ibm_A Cupin 2, conserved barr 29.2 68 0.0023 29.7 5.4 47 489-542 59-105 (167)
104 4b29_A Dimethylsulfoniopropion 28.1 80 0.0027 30.9 5.8 33 504-542 150-182 (217)
105 2q1z_B Anti-sigma factor CHRR, 27.9 1.1E+02 0.0038 29.1 6.8 65 487-576 126-192 (195)
106 3es4_A Uncharacterized protein 27.4 59 0.002 28.5 4.3 47 491-544 47-93 (116)
107 1fi2_A Oxalate oxidase, germin 26.9 1.2E+02 0.0042 28.7 7.0 53 488-542 74-130 (201)
108 3d82_A Cupin 2, conserved barr 26.0 1.4E+02 0.0046 24.1 6.4 50 507-577 51-100 (102)
109 3kgz_A Cupin 2 conserved barre 24.4 66 0.0023 29.5 4.3 45 490-541 48-92 (156)
110 1vj2_A Novel manganese-contain 23.8 81 0.0028 27.3 4.6 46 490-542 52-97 (126)
111 3jzv_A Uncharacterized protein 23.8 65 0.0022 29.9 4.2 46 490-542 57-102 (166)
112 2fqp_A Hypothetical protein BP 23.6 56 0.0019 26.8 3.4 50 489-543 21-71 (97)
113 4i4a_A Similar to unknown prot 23.2 98 0.0033 26.5 5.1 80 489-589 37-120 (128)
114 2b8m_A Hypothetical protein MJ 23.1 75 0.0026 26.9 4.2 47 490-542 31-77 (117)
115 2f4p_A Hypothetical protein TM 22.6 1.2E+02 0.0041 27.1 5.7 48 489-542 51-98 (147)
116 1y9q_A Transcriptional regulat 22.6 1.3E+02 0.0043 28.1 6.1 46 490-542 108-155 (192)
117 2vqa_A SLL1358 protein, MNCA; 22.5 1.4E+02 0.0047 31.0 6.9 51 489-542 55-107 (361)
118 1o4t_A Putative oxalate decarb 22.4 94 0.0032 27.2 4.8 46 489-541 60-106 (133)
119 2i45_A Hypothetical protein; n 22.2 77 0.0026 26.3 4.0 68 493-580 35-102 (107)
120 3es1_A Cupin 2, conserved barr 22.2 90 0.0031 29.3 4.8 48 488-541 81-128 (172)
121 2opk_A Hypothetical protein; p 21.6 86 0.003 26.7 4.3 35 504-543 51-85 (112)
122 1uij_A Beta subunit of beta co 21.6 85 0.0029 33.8 5.1 53 487-542 50-102 (416)
123 1j58_A YVRK protein; cupin, de 21.5 1.4E+02 0.0047 31.4 6.8 51 488-541 81-132 (385)
124 2o1q_A Putative acetyl/propion 21.1 1.7E+02 0.0058 26.2 6.4 52 488-544 46-97 (145)
125 3i7d_A Sugar phosphate isomera 20.9 78 0.0027 29.1 4.1 48 489-543 46-95 (163)
126 1sfn_A Conserved hypothetical 20.5 3.7E+02 0.013 26.2 9.3 65 489-576 53-117 (246)
127 3h7j_A Bacilysin biosynthesis 20.4 1.4E+02 0.0049 29.1 6.2 47 488-541 36-82 (243)
128 3l2h_A Putative sugar phosphat 20.3 79 0.0027 28.7 4.0 46 489-541 49-96 (162)
129 2vqa_A SLL1358 protein, MNCA; 20.2 1.7E+02 0.0059 30.2 7.2 52 488-542 236-289 (361)
130 2ea7_A 7S globulin-1; beta bar 20.1 99 0.0034 33.5 5.2 53 487-542 62-114 (434)
No 1
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.98 E-value=1.5e-32 Score=299.51 Aligned_cols=186 Identities=26% Similarity=0.417 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHhhcccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhC
Q 035714 338 YRKILYCLWWGLRTLSSYAQELDTSIYVEENLLAIFICILGSVLFALLIGNMQTYFQSMSVRIEEWRIKRRDTEEWMRHR 417 (731)
Q Consensus 338 ~~~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~ilfa~lIg~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~ 417 (731)
+..|..|+||++.|+||+||||++|.+..+++++++++++|++++++++|.+.+.++.. .++
T Consensus 159 f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~------~~~------------ 220 (355)
T 3beh_A 159 FGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQE------VRR------------ 220 (355)
T ss_dssp HSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH------------
T ss_pred cccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH------------
Confidence 34588999999999999999999999999999999999999999999999998877421 110
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCCHHHHHhhCChhhHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHhhcEEEEecCCC
Q 035714 418 QLPPDLQERVHQFVQYKWLATRGVNEESILRSLPVDLRREIQRHLCIALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGT 497 (731)
Q Consensus 418 ~Lp~~L~~RV~~y~~y~w~~~~g~~e~~ll~~LP~~Lr~dI~~~l~~~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge 497 (731)
+++. ...+.++++|+|++++++.++.++..++.+.++|||
T Consensus 221 ----------~~~~------------------------------~~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge 260 (355)
T 3beh_A 221 ----------GDFV------------------------------RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGA 260 (355)
T ss_dssp ----------HHHH------------------------------HHHC--------------------------------
T ss_pred ----------Hhhc------------------------------ccchhhhcccccccCCHHHHHHHHHhceEEEECCCC
Confidence 0000 024678889999999999999999999999999999
Q ss_pred EEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeeechhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeC
Q 035714 498 YIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALE 577 (731)
Q Consensus 498 ~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~ 577 (731)
.|+++||+++++|||.+|.++++..+ + ..+++|++|||.++ +.+. +++++++|.++|+++.++
T Consensus 261 ~I~~~G~~~~~ly~I~~G~v~v~~~~---~-----~~l~~G~~fGe~~~---l~~~------~~~~~~~A~~~~~l~~i~ 323 (355)
T 3beh_A 261 VICRIGEPGDRMFFVVEGSVSVATPN---P-----VELGPGAFFGEMAL---ISGE------PRSATVSAATTVSLLSLH 323 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEeCCCcCceEEEEEeeEEEEEECC---e-----eEECCCCEEeehHH---hCCC------CcceEEEECccEEEEEEe
Confidence 99999999999999999999998765 1 27899999999976 3322 478999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHH
Q 035714 578 AEDLKFVAHQFKRLHSKKLQH 598 (731)
Q Consensus 578 ~~df~~l~~~~p~l~~k~lq~ 598 (731)
+++|.++++++|++..+..+.
T Consensus 324 ~~~f~~ll~~~p~~~~~l~~~ 344 (355)
T 3beh_A 324 SADFQMLCSSSPEIAEIFRKT 344 (355)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHCHHHHHHHHHH
Confidence 999999999999888765443
No 2
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.97 E-value=4.9e-31 Score=265.87 Aligned_cols=205 Identities=21% Similarity=0.399 Sum_probs=175.3
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCCCHHHHHhhCChhhHHHHHHHHHHHHHhc
Q 035714 390 QTYFQSMSVRIEEWRIKRRDTEEWMRHRQLPPDLQERVHQFVQYKWLATRGVNEESILRSLPVDLRREIQRHLCIALVRR 469 (731)
Q Consensus 390 ~~~l~~~~~~~~e~~~k~~~~~~~m~~~~Lp~~L~~RV~~y~~y~w~~~~g~~e~~ll~~LP~~Lr~dI~~~l~~~ll~~ 469 (731)
++++++++.+..+|+++++.+++||+++++|++||.||++|++|.|.++++.+++++++.||++||.+|..+++..++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence 357889999999999999999999999999999999999999999999999999999999999999999999998877 8
Q ss_pred CCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeeechhHhhh
Q 035714 470 VPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCGEELLTWA 549 (731)
Q Consensus 470 vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~ll~a 549 (731)
+|+|.+++++++..++..++++.|.||++|+++||+++.+|||.+|.|+++. +| .. +..+++|++|||.++
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~--~~--~~--~~~l~~G~~fGe~~~--- 150 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK--DN--TV--LAILGKGDLIGSDSL--- 150 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES--SS--CE--EEEECTTCEEECSCC---
T ss_pred cHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE--CC--eE--EEEecCCCCcCcHHh---
Confidence 9999999999999999999999999999999999999999999999999986 23 22 569999999999976
Q ss_pred cCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh
Q 035714 550 LTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKLQHAFRYYSHQWR 608 (731)
Q Consensus 550 l~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~lq~~~r~ys~~~~ 608 (731)
+.+. .++++++++|+++|+++.|++++|.++++++|++..++++...+....+.+
T Consensus 151 ~~~~----~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~lr 205 (212)
T 3ukn_A 151 TKEQ----VIKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDLTYNLR 205 (212)
T ss_dssp SSSS----CCBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHEEEECB
T ss_pred ccCC----CCCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhhccccc
Confidence 3322 015899999999999999999999999999999998877776665555443
No 3
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.97 E-value=1.1e-29 Score=253.31 Aligned_cols=189 Identities=23% Similarity=0.450 Sum_probs=173.1
Q ss_pred hccHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCCCHHHHHhhCChhhHHHHHHHHHHHHHhcCCcCC
Q 035714 395 SMSVRIEEWRIKRRDTEEWMRHRQLPPDLQERVHQFVQYKWLATRGVNEESILRSLPVDLRREIQRHLCIALVRRVPFFS 474 (731)
Q Consensus 395 ~~~~~~~e~~~k~~~~~~~m~~~~Lp~~L~~RV~~y~~y~w~~~~g~~e~~ll~~LP~~Lr~dI~~~l~~~ll~~vp~F~ 474 (731)
+++.+..+|+++++.+++||+++++|.+||.||++|++|.|. +++.+++++++.||++||.+|..+++.++++++|+|.
T Consensus 2 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~ 80 (198)
T 2ptm_A 2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFV 80 (198)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchh
Confidence 578899999999999999999999999999999999999998 5789999999999999999999999999999999999
Q ss_pred cchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeeechhHhhhcCCCC
Q 035714 475 QMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCGEELLTWALTPNS 554 (731)
Q Consensus 475 ~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~ll~al~~~~ 554 (731)
+++++++..++..++...|.||++|+++||+++.+|||.+|.|+++. .+|+ . +..+++|++|||.+++ .+.
T Consensus 81 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~-~~g~--~--~~~l~~G~~fGe~~~~---~~~- 151 (198)
T 2ptm_A 81 GADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM-SDGV--I--ATSLSDGSYFGEICLL---TRE- 151 (198)
T ss_dssp TCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC-TTSC--E--EEEECTTCEESCHHHH---HSS-
T ss_pred cCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe-cCCe--E--EEEecCCCEechHHHc---CCC-
Confidence 99999999999999999999999999999999999999999999987 4444 3 5699999999999773 222
Q ss_pred CCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHHHH
Q 035714 555 TLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKLQH 598 (731)
Q Consensus 555 ~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~lq~ 598 (731)
+++++++|.++|+++.|++++|.++++++|++...+++.
T Consensus 152 -----~~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~ 190 (198)
T 2ptm_A 152 -----RRVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEEI 190 (198)
T ss_dssp -----CCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHH
T ss_pred -----ccceEEEEeeEEEEEEEeHHHHHHHHHHChHHHHHHHHH
Confidence 488999999999999999999999999999988766443
No 4
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.97 E-value=1.3e-29 Score=253.67 Aligned_cols=188 Identities=26% Similarity=0.471 Sum_probs=170.7
Q ss_pred HhccHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCCCHHHHHhhCChhhHHHHHHHHHHHHHhcCCcC
Q 035714 394 QSMSVRIEEWRIKRRDTEEWMRHRQLPPDLQERVHQFVQYKWLATRGVNEESILRSLPVDLRREIQRHLCIALVRRVPFF 473 (731)
Q Consensus 394 ~~~~~~~~e~~~k~~~~~~~m~~~~Lp~~L~~RV~~y~~y~w~~~~g~~e~~ll~~LP~~Lr~dI~~~l~~~ll~~vp~F 473 (731)
++++.+..+|+++++++++||+++++|.+||.||++|++|.|. +++.+++++++.||++||.+|..+++.++++++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f 80 (202)
T 3bpz_A 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREKIVNFNCRKLVASMPLF 80 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCch
Confidence 5788999999999999999999999999999999999999998 478999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeeechhHhhhcCCC
Q 035714 474 SQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCGEELLTWALTPN 553 (731)
Q Consensus 474 ~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~ll~al~~~ 553 (731)
.+++++++..++..+++..|+||++|+++||+++.+|||.+|.|+++. .+|++ ..+++|++|||.+++ .+.
T Consensus 81 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~g~~-----~~l~~G~~fGe~~~~---~~~ 151 (202)
T 3bpz_A 81 ANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT-KGNKE-----MKLSDGSYFGEICLL---TRG 151 (202)
T ss_dssp HTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC-TTSCC-----EEEETTCEECHHHHH---HCS
T ss_pred hcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEE-CCCeE-----EEEcCCCEeccHHHh---cCC
Confidence 999999999999999999999999999999999999999999999975 44543 267999999998774 222
Q ss_pred CCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHHH
Q 035714 554 STLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKLQ 597 (731)
Q Consensus 554 ~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~lq 597 (731)
+++++++|.++|+++.|++++|.++++++|++...+.+
T Consensus 152 ------~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~ 189 (202)
T 3bpz_A 152 ------RRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFET 189 (202)
T ss_dssp ------BCSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHH
T ss_pred ------CcccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHHHHHH
Confidence 48899999999999999999999999999988775543
No 5
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.84 E-value=4.1e-20 Score=187.99 Aligned_cols=211 Identities=14% Similarity=0.192 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccccccccccccccCCCcchhhhhHHHHHHHHHHHHHHhhheeeecCCCCccCCCeEe
Q 035714 72 HWNYVFLATCIIALLLDPLYFFLPSVNREEACLETDGNTGFLITVFRTVADLFFVFNIFMKFRTAFVSPSSRSFGRGELV 151 (731)
Q Consensus 72 ~W~~i~li~~~~~~~~~Pl~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~d~~f~lDi~l~f~Tay~~~~s~~~~~G~lV 151 (731)
.||.+++++.++++++.++..+. ..+......+..++.+++++|.+|++++|.++.
T Consensus 9 ~f~~~i~~lil~~~~~~~~~~~~----------~~~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~~-------------- 64 (223)
T 1orq_C 9 LVELGVSYAALLSVIVVVVECTM----------QLSGEYLVRLYLVDLILVIILWADYAYRAYKSG-------------- 64 (223)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHH----------HHTTCTTTHHHHHHHHHHHHHHHHHHHHHHTTS--------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc----------ccChhhhhHHHHHHHHHHHHHHHHHHHHHcccc--------------
Confidence 58888888888888877665321 112233456788999999999999999999862
Q ss_pred ecHHHHHHHHhhhhhHHHHHhhCChhHHHHHhhccCCCCcccccchhHHHHHHHHHhhhhhhhhcccccchhhcc-chhh
Q 035714 152 MDAREIRSRYFKTDFVIDLAAALPLPQFVVFLIIPSMRDSKADYNNSSLALVILLQYIPRLFVIFPLNGRIIKTT-GVVA 230 (731)
Q Consensus 152 ~d~~~Ia~~Ylks~F~iDlls~lPl~~i~~~~~~~~~~~~~~~~~~~~L~li~llqyl~Rl~ri~~l~~~i~~~~-~~~~ 230 (731)
+ .++|+|+ +++|+++++|+........ .. .....+|++|++| +.|++|+.+..++..+.. ..+.
T Consensus 65 -~----~~~y~~~-~iiDllailP~~~~~~~~~-------~~-~~~~~lr~lRllR-llR~~r~~~~~~~~~~~l~~~~~ 129 (223)
T 1orq_C 65 -D----PAGYVKK-TLYEIPALVPAGLLALIEG-------HL-AGLGLFRLVRLLR-FLRILLIISRGSKFLSAIADAAD 129 (223)
T ss_dssp -C----HHHHHHH-HHHHCTTHHHHHHHHHHHH-------HH-HTTTCHHHHHHHH-HHHHHHHHHSCSSHHHHHHHHHH
T ss_pred -c----HHHHHHH-hHHHHHHHHHHHHHHHHhc-------ch-hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 3799998 9999999999875532100 00 0112344444444 555555544333322211 1111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhhhccccCCCCccccccCCCCCCcCccccccccccccccc
Q 035714 231 KADWAGAGYNLVLFLLSSHVLGATWYLVAVGRQFSCWKDRCNWENRHRALCLPYFLDCSTLEEPDRLNWRNVTTVIDDCD 310 (731)
Q Consensus 231 ~~~~~~~~~~lll~~l~~H~~~C~wy~ls~~~~~~cw~~~c~~~~~~~~~c~~~~l~~~~~~~~~~~~W~~~~~l~~~c~ 310 (731)
. .+....+++.++..|+.||++|.+.. +..++
T Consensus 130 ~---~~l~~~~~~~~~~~~~~~~~~~~~e~---------------------------------~~~~~------------ 161 (223)
T 1orq_C 130 K---IRFYHLFGAVMLTVLYGAFAIYIVEY---------------------------------PDPNS------------ 161 (223)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHHHTTS---------------------------------SSTTC------------
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHh---------------------------------CCcCC------------
Confidence 1 12222233445677889998887520 00000
Q ss_pred cccccccccccccchhcccccccCchhHHHHHHHHHHHHHhhcccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 035714 311 AVREAEIDFKFGIFAECFTDDVAASHFYRKILYCLWWGLRTLSSYAQELDTSIYVEENLLAIFICILGSVLFALLIGNMQ 390 (731)
Q Consensus 311 ~~~~~~~~f~~G~~~~~~~~~v~~~~~~~~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~ilfa~lIg~~~ 390 (731)
....|..|+||++.|+||+||||++|.+..+++++++++++|++++|+.+|++.
T Consensus 162 --------------------------~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~ 215 (223)
T 1orq_C 162 --------------------------SIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVS 215 (223)
T ss_dssp --------------------------SCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------CcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123588999999999999999999999999999999999999999999999999
Q ss_pred HHHHh
Q 035714 391 TYFQS 395 (731)
Q Consensus 391 ~~l~~ 395 (731)
+.+++
T Consensus 216 ~~~~~ 220 (223)
T 1orq_C 216 NMFQK 220 (223)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98864
No 6
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.79 E-value=1.6e-18 Score=165.13 Aligned_cols=142 Identities=24% Similarity=0.382 Sum_probs=118.8
Q ss_pred HHHHhhCChhhHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEec
Q 035714 444 ESILRSLPVDLRREIQRHLCIALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTN 523 (731)
Q Consensus 444 ~~ll~~LP~~Lr~dI~~~l~~~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~ 523 (731)
+++++.||++||.++..+++.++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..
T Consensus 6 ~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~- 84 (160)
T 4f8a_A 6 EKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQD- 84 (160)
T ss_dssp ---------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEET-
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEEC-
Confidence 5699999999999999999999999999999999999999999999999999999999999999999999999999872
Q ss_pred CCcceEEEEEeeCCCCeeechhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHHHH
Q 035714 524 GGRDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKLQH 598 (731)
Q Consensus 524 ~g~~~~~~~~~l~~Gd~fGe~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~lq~ 598 (731)
+.. +..+++|++||+.++ +.+. ..++.++++|.++|+++.|++++|.++++++|++...+++.
T Consensus 85 ---~~~--~~~~~~G~~fG~~~~---~~~~----~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~ 147 (160)
T 4f8a_A 85 ---DEV--VAILGKGDVFGDVFW---KEAT----LAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRN 147 (160)
T ss_dssp ---TEE--EEEEETTCEEECCTT---TCSS----CCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHH
T ss_pred ---CEE--EEEecCCCEeCcHHH---hcCc----ccceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHH
Confidence 223 559999999999976 3321 01588999999999999999999999999999988766544
No 7
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.72 E-value=7.3e-17 Score=183.21 Aligned_cols=293 Identities=13% Similarity=0.168 Sum_probs=147.0
Q ss_pred CCC-ChhHHHHHHHHHHHHHHHHHHhhhhcccccccccc----cc-------cc------ccCCCcchhhhhHHHHHHHH
Q 035714 64 DPD-SEAVSHWNYVFLATCIIALLLDPLYFFLPSVNREE----AC-------LE------TDGNTGFLITVFRTVADLFF 125 (731)
Q Consensus 64 ~P~-s~~~~~W~~i~li~~~~~~~~~Pl~~~~~~~~~~~----~c-------~~------~~~~~~~~~~~~~~i~d~~f 125 (731)
+|. |.....|+.++++++++++++..+.-+ |...... .+ -+ ........+.+++.++.++|
T Consensus 174 ~p~sS~~a~~f~~~~i~~Illsii~~~leT~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~i~~~iF 252 (514)
T 2r9r_B 174 YPESSGPARIIAIVSVMVILISIVSFCLETL-PIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFFIVETLCIIWF 252 (514)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhhhcc-ccccccccccccccccccccccccccccccchhhhHHHHHHHHHHHHH
Confidence 576 567788888888888888877666522 2111000 00 00 00113446778999999999
Q ss_pred HHHHHHhhheeeecCCCCccCCCeEeecHHHHHHHHhhh-hhHHHHHhhCChhHHHHHhhccCCCCcccccchhHHHHHH
Q 035714 126 VFNIFMKFRTAFVSPSSRSFGRGELVMDAREIRSRYFKT-DFVIDLAAALPLPQFVVFLIIPSMRDSKADYNNSSLALVI 204 (731)
Q Consensus 126 ~lDi~l~f~Tay~~~~s~~~~~G~lV~d~~~Ia~~Ylks-~F~iDlls~lPl~~i~~~~~~~~~~~~~~~~~~~~L~li~ 204 (731)
.+|++++|.++- . .++|+++ |.++|+++++|+...+...... ..+.........+|++|
T Consensus 253 tiE~ilR~~~~~---~----------------k~~Y~ks~wniiDli~iip~~i~l~~~~~~-~~~~~~~~~~~~lrvlR 312 (514)
T 2r9r_B 253 SFEFLVRFFACP---S----------------KAGFFTNIMNIIDIVAIIPYYVTIFLTESN-KSVLQFQNVRRVVQIFR 312 (514)
T ss_dssp HHHHHHHHHHSS---C----------------SSSSTTSHHHHHHHHTTHHHHHHHHHHHTS-CSHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHhCC---c----------------HHHHHhchhHHHHHHHHHHHHHHHHhhhcc-ccchhhhhHHHHHHHHH
Confidence 999999999752 1 1479999 8999999999986443321110 00100011123445444
Q ss_pred HHHhhhhhhhhcccccc---hhhccchhhhhhHHHHHHHHH-HHHHHHHHHHHHHHhhhhhcchhhhhhhhhhccccCCC
Q 035714 205 LLQYIPRLFVIFPLNGR---IIKTTGVVAKADWAGAGYNLV-LFLLSSHVLGATWYLVAVGRQFSCWKDRCNWENRHRAL 280 (731)
Q Consensus 205 llqyl~Rl~ri~~l~~~---i~~~~~~~~~~~~~~~~~~ll-l~~l~~H~~~C~wy~ls~~~~~~cw~~~c~~~~~~~~~ 280 (731)
+.|++|++++.+. +......+... ...+..++ +.++..+++||++|.+- . |
T Consensus 313 ----llRvlRilkL~r~~~~l~~l~~tl~~s--~~~l~~ll~~l~i~~~if~~~~~~~e--~----~------------- 367 (514)
T 2r9r_B 313 ----IMRILRIFKLSRHSKGLQILGQTLKAS--MRELGLLIFFLFIGVILFSSAVYFAE--A----D------------- 367 (514)
T ss_dssp ----HHGGGGGGGGGGSCHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHHH--T----T-------------
T ss_pred ----HHHHHHHHHHhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhheee--c----c-------------
Confidence 3344444444433 22211111111 11122222 23455677888777542 0 0
Q ss_pred CccccccCCCCCCcCccccccccccccccccccccccccccccchhcccccccCchhHHHHHHHHHHHHHhhcccccCcc
Q 035714 281 CLPYFLDCSTLEEPDRLNWRNVTTVIDDCDAVREAEIDFKFGIFAECFTDDVAASHFYRKILYCLWWGLRTLSSYAQELD 360 (731)
Q Consensus 281 c~~~~l~~~~~~~~~~~~W~~~~~l~~~c~~~~~~~~~f~~G~~~~~~~~~v~~~~~~~~Y~~slyw~l~tlstvG~gd~ 360 (731)
...+ .+..|..|+||++.|+||+||||+
T Consensus 368 --------------~~~~--------------------------------------~F~s~~~a~y~~~vT~TTvGYGDi 395 (514)
T 2r9r_B 368 --------------ERDS--------------------------------------QFPSIPDAFWWAVVSMTTVGYGDM 395 (514)
T ss_dssp --------------CTTC--------------------------------------SCSSHHHHHHHHHHHHTTCCCSSS
T ss_pred --------------CCCc--------------------------------------cccchhhhhheeeeEEEecccCCC
Confidence 0001 123477899999999999999999
Q ss_pred ccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcC
Q 035714 361 TSIYVEENLLAIFICILGSVLFALLIGNMQTYFQSMSVRIEEWRIKRRDTEEWMRHRQLPPDLQERVHQFVQYKWLATRG 440 (731)
Q Consensus 361 ~~~~~~E~~f~i~i~i~G~ilfa~lIg~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~Lp~~L~~RV~~y~~y~w~~~~g 440 (731)
.|.+..+++|+++++++|++++++.+|.+.+.++....+..+ ++..+..++++.-..+|.....+ + .+...
T Consensus 396 ~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~~~~~-~~~~~l~~h~iicg~~~~~~~l~--~------~~~~~ 466 (514)
T 2r9r_B 396 VPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETE-GEEQAQYLQVTSSPKIPSSPDLK--K------SRSAS 466 (514)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC---------------------------------------
T ss_pred CCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCCEEEeCCCccchhHH--h------cccCC
Confidence 999999999999999999999999999999877765543222 11122223333333333332211 0 01222
Q ss_pred CCHHHHHhhCChhhHHHHHHHHH
Q 035714 441 VNEESILRSLPVDLRREIQRHLC 463 (731)
Q Consensus 441 ~~e~~ll~~LP~~Lr~dI~~~l~ 463 (731)
..++.-..+|.+.++.++.....
T Consensus 467 ~~~~s~~~el~e~~~~~~~~~~~ 489 (514)
T 2r9r_B 467 TISKSDYMEIQEGVNNSNEDFRE 489 (514)
T ss_dssp -----------------------
T ss_pred Ccccccccccccccccccccccc
Confidence 33445556777777777665443
No 8
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.72 E-value=1.3e-16 Score=157.28 Aligned_cols=153 Identities=14% Similarity=0.224 Sum_probs=128.4
Q ss_pred CHHHHHhhCChhhH----HHHHHHHHHHHHhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEE
Q 035714 442 NEESILRSLPVDLR----REIQRHLCIALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTL 517 (731)
Q Consensus 442 ~e~~ll~~LP~~Lr----~dI~~~l~~~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v 517 (731)
.+..+.+.++|+|- .+.......++++++|+|.+++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|
T Consensus 12 ~~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v 91 (187)
T 3gyd_A 12 HENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEV 91 (187)
T ss_dssp CHHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEE
T ss_pred ccceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEE
Confidence 35566666766642 44455566889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEec-CCcceEEEEEeeCCCCeeechhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHH
Q 035714 518 ESSTTN-GGRDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKL 596 (731)
Q Consensus 518 ~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~l 596 (731)
+++..+ +|++.+ +..+++|++||+.+++ .+. ++.++++|.++|+++.|++++|.++++++|++..+++
T Consensus 92 ~v~~~~~~g~~~~--~~~~~~G~~fGe~~~l---~~~------~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~ 160 (187)
T 3gyd_A 92 NVIKDIPNKGIQT--IAKVGAGAIIGEMSMI---DGM------PRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVL 160 (187)
T ss_dssp EEEEEETTTEEEE--EEEEETTCEESHHHHH---HCC------CCSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHH
T ss_pred EEEEECCCCCeEE--EEEccCCCeeeeHHHh---CCC------CeeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHH
Confidence 999876 566666 4599999999999863 333 4889999999999999999999999999999988776
Q ss_pred HHHHHHhhh
Q 035714 597 QHAFRYYSH 605 (731)
Q Consensus 597 q~~~r~ys~ 605 (731)
+...+..++
T Consensus 161 ~~l~~~l~~ 169 (187)
T 3gyd_A 161 IRLLQLLTA 169 (187)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555444333
No 9
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.70 E-value=1.5e-16 Score=156.97 Aligned_cols=149 Identities=12% Similarity=0.118 Sum_probs=121.1
Q ss_pred HHHHhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceEEEEEeeCCCCeee
Q 035714 464 IALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTN-GGRDGFFNSITLQPGDFCG 542 (731)
Q Consensus 464 ~~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 542 (731)
..++++++.|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+. .++.+|++||
T Consensus 6 ~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~--~~~~~g~~~g 83 (194)
T 3dn7_A 6 TALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTT--QFAIENWWLS 83 (194)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEE--EEEETTCEEC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEE--EEccCCcEEe
Confidence 467788899999999999999999999999999999999999999999999999999875 6777764 4999999999
Q ss_pred chhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 035714 543 EELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKLQHAFRYYSHQWRTWASCFIQSAWRKF 622 (731)
Q Consensus 543 e~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~lq~~~r~ys~~~~~~~~~~~q~a~~r~ 622 (731)
|...+ +.+. ++..+++|+++|+++.|++++|.++++++|++....+ ..+....+..
T Consensus 84 e~~~~--~~~~------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~----------------~~~~~~l~~~ 139 (194)
T 3dn7_A 84 DYMAF--QKQQ------PADFYIQSVENCELLSITYTEQENLFERIPALERYFR----------------LVYQKSFAAA 139 (194)
T ss_dssp CHHHH--HHTC------BCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHH----------------HHHHHHHHHH
T ss_pred ehHHH--hcCC------CCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHH----------------HHHHHHHHHH
Confidence 87321 2222 5889999999999999999999999999998876442 2333455667
Q ss_pred HHhHHHhhhhhhhhcC
Q 035714 623 RKRKMAMDLSIKESGY 638 (731)
Q Consensus 623 ~~R~~~~~~~~aeery 638 (731)
.+|.......++++||
T Consensus 140 ~~~~~~l~~~~~~~Rl 155 (194)
T 3dn7_A 140 QLRSKFQHMYSKEEQY 155 (194)
T ss_dssp HHHHHHHHHC------
T ss_pred HHHHHHHhcCCHHHHH
Confidence 7788888889999998
No 10
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.69 E-value=1e-16 Score=149.50 Aligned_cols=131 Identities=18% Similarity=0.258 Sum_probs=113.3
Q ss_pred hCChhhHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcce
Q 035714 449 SLPVDLRREIQRHLCIALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDG 528 (731)
Q Consensus 449 ~LP~~Lr~dI~~~l~~~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~ 528 (731)
++|+.+|.+...+...++++++|+|.+++++.++.++..++.+.|.+|++|+++||+++.+|||.+|.|++.. +|+
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~--~g~-- 82 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--EGV-- 82 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE--TTE--
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE--CCE--
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999954 343
Q ss_pred EEEEEeeCCCCeeechhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHH
Q 035714 529 FFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSK 594 (731)
Q Consensus 529 ~~~~~~l~~Gd~fGe~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k 594 (731)
. +..+.+|++||+.+++ .+. ++.++++|+++|+++.|++++|.++++++|.+.++
T Consensus 83 ~--~~~~~~G~~fGe~~~l---~~~------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~ 137 (139)
T 3ocp_A 83 K--LCTMGPGKVFGELAIL---YNC------TRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHT 137 (139)
T ss_dssp E--EEEECTTCEESCHHHH---HCC------CCSSEEEESSCEEEEEEEHHHHHHHHTC-------
T ss_pred E--EEEeCCCCEeccHHHH---CCC------CcceEEEECcceEEEEEcHHHHHHHHhhChHhhhh
Confidence 3 5699999999999873 333 48899999999999999999999999999987764
No 11
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.69 E-value=1.2e-16 Score=148.76 Aligned_cols=130 Identities=18% Similarity=0.261 Sum_probs=109.3
Q ss_pred HHHhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceE---EEEEeeCCCCe
Q 035714 465 ALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTN-GGRDGF---FNSITLQPGDF 540 (731)
Q Consensus 465 ~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~-~g~~~~---~~~~~l~~Gd~ 540 (731)
++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ .. .+.+|++
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~--~~~~G~~ 83 (142)
T 3mdp_A 6 ERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVC--SVVPGAI 83 (142)
T ss_dssp TGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEE--EECTTCE
T ss_pred HHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEE--EecCCCE
Confidence 46889999999999999999999999999999999999999999999999999998765 455554 44 8999999
Q ss_pred eechhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 035714 541 CGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKLQHAFRYYSH 605 (731)
Q Consensus 541 fGe~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~lq~~~r~ys~ 605 (731)
||+.++ + .+. ++..+++|.++|+++.|++++|.++++++|++..++++...+..++
T Consensus 84 fG~~~~---~-~~~-----~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~ 139 (142)
T 3mdp_A 84 FGVSSL---I-KPY-----HYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAAAVLA 139 (142)
T ss_dssp ECGGGS---S-TTC-----BCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred echHHH---c-CCC-----CceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence 999865 2 232 5889999999999999999999999999999998777666554443
No 12
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.67 E-value=3.4e-17 Score=152.02 Aligned_cols=129 Identities=67% Similarity=1.083 Sum_probs=109.7
Q ss_pred HHHhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeeech
Q 035714 465 ALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCGEE 544 (731)
Q Consensus 465 ~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~ 544 (731)
++++++|+|..++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|++....+|++.++.+..+.+|++||+.
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~ 85 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDE 85 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTH
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHH
Confidence 45789999999999999999999999999999999999999999999999999976556777765434489999999999
Q ss_pred hHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHH
Q 035714 545 LLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHS 593 (731)
Q Consensus 545 ~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~ 593 (731)
++++.+.+.+....|+++++++|+++|+++.|++++|.++++++|++++
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~ 134 (137)
T 1wgp_A 86 LLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGP 134 (137)
T ss_dssp HHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTT
T ss_pred HHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHh
Confidence 8643455543222335789999999999999999999999999997754
No 13
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.67 E-value=2.1e-15 Score=151.02 Aligned_cols=154 Identities=19% Similarity=0.241 Sum_probs=123.0
Q ss_pred HhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceEEEEEeeCCCCeeechh
Q 035714 467 VRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTN-GGRDGFFNSITLQPGDFCGEEL 545 (731)
Q Consensus 467 l~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~ 545 (731)
++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+. ..+++|++||+.+
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~--~~~~~g~~~G~~~ 78 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTL--ALLGPGELFGEMS 78 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEE--EEECTTCEECHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEE--EEecCCCEEeehh
Confidence 468899999999999999999999999999999999999999999999999999874 5776664 5999999999987
Q ss_pred HhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHh
Q 035714 546 LTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKLQHAFRYYSHQWRTWASCFIQSAWRKFRKR 625 (731)
Q Consensus 546 ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~lq~~~r~ys~~~~~~~~~~~q~a~~r~~~R 625 (731)
++ .+. ++..+++|+++|+++.|++++|.++++++|++...+++...+.. +.....+..........|
T Consensus 79 ~~---~~~------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~R 145 (216)
T 4ev0_A 79 LL---DEG------ERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLARRL----READLELDLLSFEEARNR 145 (216)
T ss_dssp HH---HCC------BCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred hc---CCC------CcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHHHH----HHHHHHHHHHhcCCHHHH
Confidence 63 333 47899999999999999999999999999999886655544433 333444444445555666
Q ss_pred HHHhhhhhhh
Q 035714 626 KMAMDLSIKE 635 (731)
Q Consensus 626 ~~~~~~~~ae 635 (731)
....++..++
T Consensus 146 l~~~L~~~~~ 155 (216)
T 4ev0_A 146 VAYALLKLLR 155 (216)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 6666665553
No 14
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.67 E-value=2.1e-16 Score=151.23 Aligned_cols=129 Identities=16% Similarity=0.236 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEe
Q 035714 455 RREIQRHLCIALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSIT 534 (731)
Q Consensus 455 r~dI~~~l~~~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~ 534 (731)
+.+..+..+.++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++...+|++..+ ..
T Consensus 28 ~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~--~~ 105 (161)
T 3idb_B 28 KTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCV--GN 105 (161)
T ss_dssp CCHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEEEE--EE
T ss_pred CCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeEEE--EE
Confidence 3444555678899999999999999999999999999999999999999999999999999999999767877764 49
Q ss_pred eCCCCeeechhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHH
Q 035714 535 LQPGDFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSK 594 (731)
Q Consensus 535 l~~Gd~fGe~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k 594 (731)
+.+|++||+.++ +.+. ++.++++|+++|+++.|++++|.++++++|.+..+
T Consensus 106 ~~~G~~fGe~~~---~~~~------~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~ 156 (161)
T 3idb_B 106 YDNRGSFGELAL---MYNT------PRAATITATSPGALWGLDRVTFRRIIVKNNAKKRK 156 (161)
T ss_dssp EESCCEECGGGG---TCCC------CCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSCC
T ss_pred cCCCCEechHHH---HcCC------CcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHHH
Confidence 999999999976 3333 58899999999999999999999999999977653
No 15
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.66 E-value=8.1e-16 Score=144.19 Aligned_cols=121 Identities=25% Similarity=0.400 Sum_probs=108.0
Q ss_pred HHHHhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceEEEEEeeCCCCeee
Q 035714 464 IALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTN-GGRDGFFNSITLQPGDFCG 542 (731)
Q Consensus 464 ~~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 542 (731)
.++++++|+|..++++.++.++..++.+.+++|++|+++||+++.+|||.+|.++++..+ +|++.+ +..+.+|++||
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G 81 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENM--LAVVGPSELIG 81 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEE--EEEECTTCEES
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEE--EEEcCCcCEec
Confidence 457899999999999999999999999999999999999999999999999999999876 466665 45999999999
Q ss_pred chhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHH
Q 035714 543 EELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKK 595 (731)
Q Consensus 543 e~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~ 595 (731)
+.++ +.+. ++..+++|.++|+++.|++++|.++++++|++...+
T Consensus 82 ~~~~---~~~~------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~ 125 (149)
T 2pqq_A 82 ELSL---FDPG------PRTATGTALTEVKLLALGHGDLQPWLNVRPEVATAL 125 (149)
T ss_dssp GGGG---TSCE------ECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHH
T ss_pred hHHh---cCCC------CcceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHH
Confidence 9865 2322 588999999999999999999999999999887744
No 16
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.64 E-value=1.5e-15 Score=154.62 Aligned_cols=126 Identities=14% Similarity=0.175 Sum_probs=112.4
Q ss_pred HHHHHhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceEEEEEeeCCCCee
Q 035714 463 CIALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTN-GGRDGFFNSITLQPGDFC 541 (731)
Q Consensus 463 ~~~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~f 541 (731)
..++++++|+|.+++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+. ..+++|++|
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~--~~~~~G~~~ 86 (237)
T 3fx3_A 9 QKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVV--SVFTRGESF 86 (237)
T ss_dssp HHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEE--EEEETTEEE
T ss_pred HHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEE--EEeCCCCEe
Confidence 4678999999999999999999999999999999999999999999999999999999865 6776664 499999999
Q ss_pred echhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHHHHH
Q 035714 542 GEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKLQHA 599 (731)
Q Consensus 542 Ge~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~lq~~ 599 (731)
|+.+++ .+. ++..+++|+++|+++.|++++|..++.++|++...+++..
T Consensus 87 G~~~~~---~~~------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 135 (237)
T 3fx3_A 87 GEAVAL---RNT------PYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATT 135 (237)
T ss_dssp CHHHHH---HTC------CCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHH
T ss_pred chHHHh---cCC------CCCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHH
Confidence 999873 333 4889999999999999999999999999999988665444
No 17
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.64 E-value=2.5e-15 Score=141.82 Aligned_cols=125 Identities=16% Similarity=0.261 Sum_probs=107.1
Q ss_pred HHHHhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceEEEEEeeCCCCeee
Q 035714 464 IALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTN-GGRDGFFNSITLQPGDFCG 542 (731)
Q Consensus 464 ~~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 542 (731)
.++++++++|..++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+. ..+.+|++||
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~--~~~~~G~~~G 88 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKIL--EVTNERNTFA 88 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CC--EEECTTEEES
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEE--EEccCCCeec
Confidence 578999999999999999999999999999999999999999999999999999999765 4666554 4999999999
Q ss_pred chhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHHHH
Q 035714 543 EELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKLQH 598 (731)
Q Consensus 543 e~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~lq~ 598 (731)
+..+ +.+. +++..+++|.++|+++.|++++|.++++++|++...+++.
T Consensus 89 ~~~~---~~~~-----~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~ 136 (154)
T 2z69_A 89 EAMM---FMDT-----PNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAK 136 (154)
T ss_dssp GGGG---GSSC-----SBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHhh---ccCC-----CCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHH
Confidence 9976 3322 2388999999999999999999999999999888765443
No 18
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.64 E-value=5.3e-15 Score=149.49 Aligned_cols=158 Identities=15% Similarity=0.158 Sum_probs=116.3
Q ss_pred HHHHhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceEEEEEeeCCCCeee
Q 035714 464 IALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTN-GGRDGFFNSITLQPGDFCG 542 (731)
Q Consensus 464 ~~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 542 (731)
...+++.++|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+. .++++|++||
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~--~~~~~g~~~G 87 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVL--GYFGSGEFVG 87 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEE--EEECTTCEES
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEE--EEecCCCEEE
Confidence 567889999999999999999999999999999999999999999999999999999765 5777664 4999999999
Q ss_pred chhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHh-----HHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 035714 543 EELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQF-----KRLHSKKLQHAFRYYSHQWRTWASCFIQS 617 (731)
Q Consensus 543 e~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~-----p~l~~k~lq~~~r~ys~~~~~~~~~~~q~ 617 (731)
+..+ +.++. ++..+++|.++|+++.|++++|.++++++ |++...+++...+ ..+.....+...
T Consensus 88 ~~~~---~~~~~-----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~----~l~~~~~~~~~l 155 (230)
T 3iwz_A 88 EMGL---FIESD-----TREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLSK----RLLDTTRKASRL 155 (230)
T ss_dssp CGGG---TSCCS-----BCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred ehhh---hcCCC-----CceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 9976 33332 58899999999999999999999999999 9888766544433 333344444444
Q ss_pred HHHHHHHhHHHhhhhhhh
Q 035714 618 AWRKFRKRKMAMDLSIKE 635 (731)
Q Consensus 618 a~~r~~~R~~~~~~~~ae 635 (731)
.......|....++..++
T Consensus 156 ~~~~~~~Rl~~~L~~l~~ 173 (230)
T 3iwz_A 156 AFLDVTDRIVRTLHDLSK 173 (230)
T ss_dssp HHCCHHHHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHHHHHHH
Confidence 455555566665555444
No 19
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.64 E-value=3.8e-15 Score=150.95 Aligned_cols=156 Identities=15% Similarity=0.239 Sum_probs=126.0
Q ss_pred HHHHhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceEEEEEeeCCCCeee
Q 035714 464 IALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTN-GGRDGFFNSITLQPGDFCG 542 (731)
Q Consensus 464 ~~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 542 (731)
.++++++|+|.+++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+. ..+++|++||
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~--~~~~~g~~~G 82 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVL--GDIYAPGVVG 82 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEE--EEEESSEEES
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEE--EecCCCCEEe
Confidence 467899999999999999999999999999999999999999999999999999999876 6776664 4999999999
Q ss_pred chhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 035714 543 EELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKLQHAFRYYSHQWRTWASCFIQSAWRKF 622 (731)
Q Consensus 543 e~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~lq~~~r~ys~~~~~~~~~~~q~a~~r~ 622 (731)
+.++ +.+. ++..+++|+++|+++.|++++|.+++.++|++...+++...+...+ ....+. .....
T Consensus 83 ~~~~---~~~~------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~----~~~~~~--~~~~~ 147 (231)
T 3e97_A 83 ETAV---LAHQ------ERSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLARRVTF----LNDELI--AFGQN 147 (231)
T ss_dssp TTTT---TCCC------CCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHH----HHHHHH--HHHHC
T ss_pred eHHH---hCCC------CceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHH----HHHHHH--HhccC
Confidence 9965 3322 5889999999999999999999999999999988776555443322 222222 44455
Q ss_pred H-HhHHHhhhhhhhh
Q 035714 623 R-KRKMAMDLSIKES 636 (731)
Q Consensus 623 ~-~R~~~~~~~~aee 636 (731)
. .|....++..++.
T Consensus 148 ~~~Rl~~~L~~~~~~ 162 (231)
T 3e97_A 148 TEAALTHVFANLYRQ 162 (231)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh
Confidence 5 6777766666553
No 20
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.63 E-value=2e-15 Score=152.62 Aligned_cols=157 Identities=18% Similarity=0.330 Sum_probs=126.8
Q ss_pred HHHHhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceEEEEEeeCCCCeee
Q 035714 464 IALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTN-GGRDGFFNSITLQPGDFCG 542 (731)
Q Consensus 464 ~~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 542 (731)
.++++++|+|..++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+. ..+.+|++||
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~--~~~~~G~~~G 82 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLL--TIMGPSDMFG 82 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEE--EEECTTCEES
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEE--EEecCCCEEe
Confidence 467899999999999999999999999999999999999999999999999999999876 5776664 4999999999
Q ss_pred chhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 035714 543 EELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKLQHAFRYYSHQWRTWASCFIQSAWRKF 622 (731)
Q Consensus 543 e~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~lq~~~r~ys~~~~~~~~~~~q~a~~r~ 622 (731)
+.++ +.+. ++.++++|+++|+++.|++++|.++++++|++...+++...+ ..+.....+........
T Consensus 83 ~~~~---~~~~------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~----~l~~~~~~~~~l~~~~~ 149 (227)
T 3d0s_A 83 ELSI---FDPG------PRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLAR----RLRRTNNNLADLIFTDV 149 (227)
T ss_dssp CHHH---HSCS------CCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHH----HHHHHHHHHHHHHHSCH
T ss_pred eHHH---cCCC------CceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHH----HHHHHHHHHHHHhcCCH
Confidence 9976 3333 488999999999999999999999999999998876655443 22333333334444555
Q ss_pred HHhHHHhhhhhhh
Q 035714 623 RKRKMAMDLSIKE 635 (731)
Q Consensus 623 ~~R~~~~~~~~ae 635 (731)
..|....++..++
T Consensus 150 ~~Rl~~~L~~l~~ 162 (227)
T 3d0s_A 150 PGRVAKQLLQLAQ 162 (227)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5566665555443
No 21
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.63 E-value=5e-15 Score=148.63 Aligned_cols=156 Identities=15% Similarity=0.189 Sum_probs=122.2
Q ss_pred HHHhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceEEEEEeeCCCCe--e
Q 035714 465 ALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTN-GGRDGFFNSITLQPGDF--C 541 (731)
Q Consensus 465 ~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~--f 541 (731)
++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+. ..+++|++ |
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~--~~~~~G~~~~~ 80 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITL--YRLFDMDMCLL 80 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEE--EEECTTCEESG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEE--EecCCCCeeeh
Confidence 57899999999999999999999999999999999999999999999999999999865 5776664 59999999 6
Q ss_pred echhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 035714 542 GEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKLQHAFRYYSHQWRTWASCFIQSAWRK 621 (731)
Q Consensus 542 Ge~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~lq~~~r~ys~~~~~~~~~~~q~a~~r 621 (731)
|+.++ +.+. ++..+++|+++|+++.|++++|.+++.++|++...+++...+.+ +.......+.....
T Consensus 81 g~~~~---~~~~------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l----~~~~~~~~~~~~~~ 147 (220)
T 3dv8_A 81 SASCI---MRSI------QFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMATRF----SDVMWLIEQIMWKS 147 (220)
T ss_dssp GGGGG---CTTC------CCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH----HHHHHHHHHHHHSC
T ss_pred hHHHH---hCCC------CCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH----HHHHHHHHHHhcCC
Confidence 88765 3332 58899999999999999999999999999999886654443322 22333333334444
Q ss_pred HHHhHHHhhhhhhh
Q 035714 622 FRKRKMAMDLSIKE 635 (731)
Q Consensus 622 ~~~R~~~~~~~~ae 635 (731)
...|....++..++
T Consensus 148 ~~~Rl~~~L~~~~~ 161 (220)
T 3dv8_A 148 LDKRVASFLLEETS 161 (220)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh
Confidence 55555555555444
No 22
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.62 E-value=2.4e-15 Score=153.06 Aligned_cols=126 Identities=13% Similarity=0.210 Sum_probs=110.8
Q ss_pred HHHHHhcCCcCCcchHHHHHHHHhh--cEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceEEEEEeeCCCC
Q 035714 463 CIALVRRVPFFSQMDDQLLDAICQR--LVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTN-GGRDGFFNSITLQPGD 539 (731)
Q Consensus 463 ~~~ll~~vp~F~~ls~~~l~~L~~~--l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd 539 (731)
....++++|+|..++++.++.++.. ++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.++ ..+++|+
T Consensus 16 ~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l--~~~~~G~ 93 (232)
T 1zyb_A 16 MFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVI--EQIEAPY 93 (232)
T ss_dssp HHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEE--EEEESSE
T ss_pred HHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEE--EEccCCC
Confidence 4677899999999999999999998 999999999999999999999999999999998764 5777664 4999999
Q ss_pred eeechhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHHHH
Q 035714 540 FCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKLQH 598 (731)
Q Consensus 540 ~fGe~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~lq~ 598 (731)
+||+.++ +.+. |++.++++|+++|+++.|++++|.++++++|++...+++.
T Consensus 94 ~fG~~~~---~~~~-----~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~ 144 (232)
T 1zyb_A 94 LIEPQSL---FGMN-----TNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNI 144 (232)
T ss_dssp EECGGGG---SSSC-----CBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHH
T ss_pred eeeehHH---hCCC-----CCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHH
Confidence 9999975 3332 2378999999999999999999999999999988765443
No 23
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.61 E-value=3.3e-15 Score=150.72 Aligned_cols=158 Identities=14% Similarity=0.198 Sum_probs=126.5
Q ss_pred HHHHhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceEEEEEeeCCCCeee
Q 035714 464 IALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTN-GGRDGFFNSITLQPGDFCG 542 (731)
Q Consensus 464 ~~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 542 (731)
.++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+. ..+++|++||
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~--~~~~~g~~~G 85 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKIL--EVTNERNTFA 85 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCC--CEECTTEEES
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEE--EEcCCCCEee
Confidence 578899999999999999999999999999999999999999999999999999998765 5666664 4899999999
Q ss_pred chhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 035714 543 EELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKLQHAFRYYSHQWRTWASCFIQSAWRKF 622 (731)
Q Consensus 543 e~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~lq~~~r~ys~~~~~~~~~~~q~a~~r~ 622 (731)
+.++ +.+. |.+..+++|+++|+++.|++++|..++.++|++...+++...+.. +.....+........
T Consensus 86 ~~~~---~~~~-----~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l----~~~~~~~~~~~~~~~ 153 (227)
T 3dkw_A 86 EAMM---FMDT-----PNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRL----HQRIDEIETLSLKNA 153 (227)
T ss_dssp CTTT---TTTC-----SBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred eHHh---cCCC-----CCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHH----HHHHHHHHHHhcCCH
Confidence 9865 2222 237899999999999999999999999999999886655554432 223333334445555
Q ss_pred HHhHHHhhhhhhh
Q 035714 623 RKRKMAMDLSIKE 635 (731)
Q Consensus 623 ~~R~~~~~~~~ae 635 (731)
..|....++..++
T Consensus 154 ~~Rl~~~L~~~~~ 166 (227)
T 3dkw_A 154 THRVVRYLLTLAA 166 (227)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhh
Confidence 6666666555544
No 24
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.60 E-value=6.2e-15 Score=136.71 Aligned_cols=122 Identities=27% Similarity=0.453 Sum_probs=107.5
Q ss_pred HHHHHhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeee
Q 035714 463 CIALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCG 542 (731)
Q Consensus 463 ~~~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 542 (731)
..++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.++++..+ + ..+.+|++||
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~---~-----~~~~~G~~~G 80 (138)
T 1vp6_A 9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN---P-----VELGPGAFFG 80 (138)
T ss_dssp HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS---C-----EEECTTCEEC
T ss_pred HHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC---c-----ceECCCCEee
Confidence 3578999999999999999999999999999999999999999999999999999998654 1 2789999999
Q ss_pred chhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 035714 543 EELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKLQHAFR 601 (731)
Q Consensus 543 e~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~lq~~~r 601 (731)
+.+++ .+. ++..+++|.++|+++.|++++|.++++++|++...+++...+
T Consensus 81 ~~~~~---~~~------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~ 130 (138)
T 1vp6_A 81 EMALI---SGE------PRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALE 130 (138)
T ss_dssp HHHHH---HCC------CCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred ehHhc---cCC------CceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 99763 333 478999999999999999999999999999998866554433
No 25
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.59 E-value=1.3e-14 Score=147.22 Aligned_cols=152 Identities=16% Similarity=0.184 Sum_probs=119.9
Q ss_pred cCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceEEEEEeeCCCCeeechhHh
Q 035714 469 RVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTN-GGRDGFFNSITLQPGDFCGEELLT 547 (731)
Q Consensus 469 ~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~ll 547 (731)
++|+|..++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+. ..+++|++||+.+++
T Consensus 14 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~--~~~~~G~~~G~~~~~ 91 (232)
T 2gau_A 14 LRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHIS--RIVKPGQFFGMRPYF 91 (232)
T ss_dssp SHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEE--EEECTTCEESHHHHH
T ss_pred ccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEE--EEeCCCCEeeeehhh
Confidence 5789999999999999999999999999999999999999999999999999765 5777664 499999999999763
Q ss_pred hhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhHH
Q 035714 548 WALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKLQHAFRYYSHQWRTWASCFIQSAWRKFRKRKM 627 (731)
Q Consensus 548 ~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~lq~~~r~ys~~~~~~~~~~~q~a~~r~~~R~~ 627 (731)
.+. ++..+++|+++|+++.|++++|.++++++|++...+++...+. .+.....+..........|..
T Consensus 92 ---~~~------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~----l~~~~~~~~~l~~~~~~~Rl~ 158 (232)
T 2gau_A 92 ---AEE------TCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKE----LGYAERRTVTLTQKHVRGRLA 158 (232)
T ss_dssp ---HTS------CCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH----HHHHHHHHHHHHHSCHHHHHH
T ss_pred ---CCC------CcceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH----HHHHHHHHHHHhcCCHHHHHH
Confidence 333 4789999999999999999999999999999988766554433 233333334444455566666
Q ss_pred Hhhhhhhh
Q 035714 628 AMDLSIKE 635 (731)
Q Consensus 628 ~~~~~~ae 635 (731)
..++..++
T Consensus 159 ~~L~~l~~ 166 (232)
T 2gau_A 159 ETLLILKE 166 (232)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555444
No 26
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.58 E-value=2.9e-14 Score=141.96 Aligned_cols=152 Identities=14% Similarity=0.180 Sum_probs=118.0
Q ss_pred CcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceEEEEEeeCCCCeeechhHhhh
Q 035714 471 PFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTN-GGRDGFFNSITLQPGDFCGEELLTWA 549 (731)
Q Consensus 471 p~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~ll~a 549 (731)
++++.++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+. ..+++|++||+.++
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~--~~~~~g~~~G~~~~--- 76 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMIL--SYLNQGDFIGELGL--- 76 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEE--EEEETTCEESCTTT---
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEE--EEcCCCCEeeeHHH---
Confidence 45667899999999999999999999999999999999999999999999875 6777664 49999999999976
Q ss_pred cCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhHHHh
Q 035714 550 LTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKLQHAFRYYSHQWRTWASCFIQSAWRKFRKRKMAM 629 (731)
Q Consensus 550 l~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~lq~~~r~ys~~~~~~~~~~~q~a~~r~~~R~~~~ 629 (731)
+.+.. ++..+++|+++|+++.|++++|.++++++|++...+++...+ ..+.....+..........|....
T Consensus 77 ~~~~~-----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~----~l~~~~~~~~~~~~~~~~~Rl~~~ 147 (210)
T 3ryp_A 77 FEEGQ-----ERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMAR----RLQVTSEKVGNLAFLDVTGRIAQT 147 (210)
T ss_dssp TSTTC-----BCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHH----HHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred hcCCC-----CceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHH----HHHHHHHHHHHHhhCCHHHHHHHH
Confidence 33332 588999999999999999999999999999998866544433 333344444444555566666666
Q ss_pred hhhhhhh
Q 035714 630 DLSIKES 636 (731)
Q Consensus 630 ~~~~aee 636 (731)
++..+++
T Consensus 148 L~~l~~~ 154 (210)
T 3ryp_A 148 LLNLAKQ 154 (210)
T ss_dssp HHHHTTS
T ss_pred HHHHHHh
Confidence 6655543
No 27
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.58 E-value=1.4e-14 Score=137.56 Aligned_cols=119 Identities=18% Similarity=0.280 Sum_probs=104.7
Q ss_pred HHHHHHHhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCe
Q 035714 461 HLCIALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDF 540 (731)
Q Consensus 461 ~l~~~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~ 540 (731)
.....+++++|+|..++++.+..++..++...|.+|++|+++||+++.+|||.+|.|+++. +|+ . +..+.+|++
T Consensus 34 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~~~--~--~~~~~~G~~ 107 (154)
T 3pna_A 34 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NNE--W--ATSVGEGGS 107 (154)
T ss_dssp HHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE--TTE--E--EEEECTTCE
T ss_pred HHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE--CCE--E--EEEecCCCE
Confidence 4457889999999999999999999999999999999999999999999999999999987 333 2 458999999
Q ss_pred eechhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHH
Q 035714 541 CGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSK 594 (731)
Q Consensus 541 fGe~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k 594 (731)
||+.+++ .+. ++.++++|+++|+++.|++++|.++++++|.+..+
T Consensus 108 fGe~~~~---~~~------~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~~ 152 (154)
T 3pna_A 108 FGELALI---YGT------PRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRK 152 (154)
T ss_dssp ECCHHHH---HCC------CCSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC--
T ss_pred eeehHhh---cCC------CcceEEEECcceEEEEEeHHHHHHHHHhChHHHhh
Confidence 9999873 333 47899999999999999999999999999976553
No 28
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.58 E-value=1.7e-14 Score=152.28 Aligned_cols=137 Identities=17% Similarity=0.247 Sum_probs=119.7
Q ss_pred HHHHhhCChhhHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEec
Q 035714 444 ESILRSLPVDLRREIQRHLCIALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTN 523 (731)
Q Consensus 444 ~~ll~~LP~~Lr~dI~~~l~~~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~ 523 (731)
.....++|+..|.+...+...++++++++|..++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|++..
T Consensus 18 ~~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~-- 95 (299)
T 3shr_A 18 RGSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK-- 95 (299)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE--
T ss_pred ccccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE--
Confidence 344568999999999999999999999999999999999999999999999999999999999999999999999954
Q ss_pred CCcceEEEEEeeCCCCeeechhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHH
Q 035714 524 GGRDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKK 595 (731)
Q Consensus 524 ~g~~~~~~~~~l~~Gd~fGe~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~ 595 (731)
+|+ . +..+.+|++|||.++ +.+. +++++++|.++|+++.|++++|..++.++|......
T Consensus 96 ~g~--~--~~~~~~G~~fGe~~l---l~~~------~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~ 154 (299)
T 3shr_A 96 EGV--K--LCTMGPGKVFGELAI---LYNC------TRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTE 154 (299)
T ss_dssp TTE--E--EEEECTTCEESCSGG---GTTT------BCCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCE--E--EEEeCCCCeeeHhHH---hcCC------CCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHH
Confidence 332 2 568999999999976 3322 589999999999999999999999999999766544
No 29
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.56 E-value=1.7e-14 Score=145.10 Aligned_cols=150 Identities=7% Similarity=0.094 Sum_probs=124.1
Q ss_pred HHHhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeeech
Q 035714 465 ALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCGEE 544 (731)
Q Consensus 465 ~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~ 544 (731)
.+++++|+|..++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++...+|++.+. ..+++|++||+
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~--~~~~~G~~~G~- 80 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFTL--AILEAGDIFCT- 80 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEEEE--EEEETTCEEES-
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEE--EEcCCCCEeCC-
Confidence 357889999999999999999999999999999999999999999999999999976667887774 49999999998
Q ss_pred hHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 035714 545 LLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKLQHAFRYYSHQWRTWASCFIQSAWRKFRK 624 (731)
Q Consensus 545 ~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~lq~~~r~ys~~~~~~~~~~~q~a~~r~~~ 624 (731)
+ +.++++|+++|+++.|++++|.++++++|++...+++...+ ..+.....+..........
T Consensus 81 ---------~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~ 141 (220)
T 2fmy_A 81 ---------H------TRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGD----LLKNSLTIINGLVFKDARL 141 (220)
T ss_dssp ---------C------SSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHH----HHHHHHHHHHHHHTHHHHH
T ss_pred ---------c------cceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH----HHHHHHHHHHHHHcCCHHH
Confidence 1 67899999999999999999999999999998876655443 3333444444555666667
Q ss_pred hHHHhhhhhhhh
Q 035714 625 RKMAMDLSIKES 636 (731)
Q Consensus 625 R~~~~~~~~aee 636 (731)
|....++..+++
T Consensus 142 Rl~~~L~~l~~~ 153 (220)
T 2fmy_A 142 RLAEFLVQAAMD 153 (220)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777766665553
No 30
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.56 E-value=8.8e-14 Score=138.12 Aligned_cols=148 Identities=19% Similarity=0.184 Sum_probs=111.3
Q ss_pred chHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceEEEEEeeCCCCeeechhHhhhcCCCC
Q 035714 476 MDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTN-GGRDGFFNSITLQPGDFCGEELLTWALTPNS 554 (731)
Q Consensus 476 ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~ll~al~~~~ 554 (731)
|+++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+. ..+++|++||+.++ +.+..
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~--~~~~~g~~~G~~~~---~~~~~ 75 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMII--GYLNSGDFFGELGL---FEKEG 75 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEE--EEEETTCEESCTTT---CC---
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEE--EEcCCCCCcccHHH---hcCCC
Confidence 578999999999999999999999999999999999999999999875 5777664 49999999999976 33220
Q ss_pred CCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhHHHhhhhhh
Q 035714 555 TLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKLQHAFRYYSHQWRTWASCFIQSAWRKFRKRKMAMDLSIK 634 (731)
Q Consensus 555 ~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~lq~~~r~ys~~~~~~~~~~~q~a~~r~~~R~~~~~~~~a 634 (731)
..+++..+++|+++|+++.|++++|.++++++|++...+++...+... .....+..........|....++..+
T Consensus 76 --~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~----~~~~~~~~l~~~~~~~Rl~~~L~~l~ 149 (207)
T 2oz6_A 76 --SEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLR----KTTRKVGDLAFLDVTGRVARTLLDLC 149 (207)
T ss_dssp ----CBCCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH----HHHHHHHHHHHCCHHHHHHHHHHHHT
T ss_pred --CCCCcceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHH----HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 000478999999999999999999999999999998866554433222 22233333334444455555444433
No 31
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.54 E-value=9.8e-14 Score=143.82 Aligned_cols=148 Identities=15% Similarity=0.189 Sum_probs=114.6
Q ss_pred CcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceEEEEEeeCCCCeeechhHhhhcCC
Q 035714 474 SQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTN-GGRDGFFNSITLQPGDFCGEELLTWALTP 552 (731)
Q Consensus 474 ~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~ll~al~~ 552 (731)
..++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+. .++++|++||+..+ +.+
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~--~~~~~G~~~Ge~~~---~~~ 129 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMIL--SYLNQGDFIGELGL---FEE 129 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEE--EEEETTCEESCTTT---TST
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEE--EEcCCCCEEeehHH---hCC
Confidence 45899999999999999999999999999999999999999999999875 5776664 59999999999976 333
Q ss_pred CCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhHHHhhhh
Q 035714 553 NSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKLQHAFRYYSHQWRTWASCFIQSAWRKFRKRKMAMDLS 632 (731)
Q Consensus 553 ~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~lq~~~r~ys~~~~~~~~~~~q~a~~r~~~R~~~~~~~ 632 (731)
. +++.++++|+++|+++.|++++|.+++.++|++...+++...+ ..+.....+..........|....++.
T Consensus 130 ~-----~~~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~----~l~~~~~~~~~l~~~~~~~Rla~~Ll~ 200 (260)
T 3kcc_A 130 G-----QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMAR----RLQVTSEKVGNLAFLLVTGRIAQTLLN 200 (260)
T ss_dssp T-----CBCCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHH----HHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred C-----CCCceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3 2588999999999999999999999999999998766544433 233333334444455555666666555
Q ss_pred hhh
Q 035714 633 IKE 635 (731)
Q Consensus 633 ~ae 635 (731)
.++
T Consensus 201 l~~ 203 (260)
T 3kcc_A 201 LAK 203 (260)
T ss_dssp HHT
T ss_pred HHH
Confidence 544
No 32
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.54 E-value=2.5e-14 Score=144.17 Aligned_cols=148 Identities=11% Similarity=0.099 Sum_probs=120.3
Q ss_pred HHhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeeechh
Q 035714 466 LVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCGEEL 545 (731)
Q Consensus 466 ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~ 545 (731)
+++++|+|..++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++...+|++.+. ..+++|++|| .
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~--~~~~~G~~fG-~- 76 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISL--FYLTSGDMFC-M- 76 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEEE--EEEETTCEEE-S-
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEE--EEcCCCCEec-C-
Confidence 46789999999999999999999999999999999999999999999999999985567887764 4999999999 1
Q ss_pred HhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHh
Q 035714 546 LTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKLQHAFRYYSHQWRTWASCFIQSAWRKFRKR 625 (731)
Q Consensus 546 ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~lq~~~r~ys~~~~~~~~~~~q~a~~r~~~R 625 (731)
++.++++|+++|+++.|++++|.++++++|++...+++...+ ..+.....+..........|
T Consensus 77 --------------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~----~l~~~~~~~~~l~~~~~~~R 138 (222)
T 1ft9_A 77 --------------HSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGR----ALTSCMRTIEDLMFHDIKQR 138 (222)
T ss_dssp --------------CSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHH----HHHHHHHHHHHHHTHHHHHH
T ss_pred --------------CCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHH----HHHHHHHHHHHHhcCCHHHH
Confidence 478999999999999999999999999999988866555443 33333444444455555666
Q ss_pred HHHhhhhhhh
Q 035714 626 KMAMDLSIKE 635 (731)
Q Consensus 626 ~~~~~~~~ae 635 (731)
....++..++
T Consensus 139 l~~~L~~l~~ 148 (222)
T 1ft9_A 139 IAGFFIDHAN 148 (222)
T ss_dssp HHHHHHHTCB
T ss_pred HHHHHHHHHH
Confidence 6666555543
No 33
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.54 E-value=5.3e-14 Score=150.87 Aligned_cols=127 Identities=17% Similarity=0.247 Sum_probs=111.6
Q ss_pred HHHHhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecC-CcceEEEEEeeCCCCeee
Q 035714 464 IALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNG-GRDGFFNSITLQPGDFCG 542 (731)
Q Consensus 464 ~~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~-g~~~~~~~~~l~~Gd~fG 542 (731)
.++++++|+|..++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+++..+. |++ + +..+.+|++||
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~-~--~~~~~~G~~fG 88 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA-I--IARALPGMIVG 88 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCE-E--EEEECTTCEES
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcE-E--EEEecCCCEee
Confidence 4688999999999999999999999999999999999999999999999999999998764 443 4 55999999999
Q ss_pred chhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 035714 543 EELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKLQHAFRYY 603 (731)
Q Consensus 543 e~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~lq~~~r~y 603 (731)
|.+++ .+. +++++++|+++|+++.|++++|.+++ ++|.+..++++...+..
T Consensus 89 e~~l~---~~~------~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~~~ 139 (333)
T 4ava_A 89 EIALL---RDS------PRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQRL 139 (333)
T ss_dssp HHHHH---HTC------BCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHHHH
T ss_pred HHHhc---CCC------CceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHHHH
Confidence 99773 323 58999999999999999999999999 99999887765554433
No 34
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.53 E-value=5.8e-15 Score=136.69 Aligned_cols=124 Identities=16% Similarity=0.272 Sum_probs=105.5
Q ss_pred ChhhHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHhhcEEEEec-CCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceE
Q 035714 451 PVDLRREIQRHLCIALVRRVPFFSQMDDQLLDAICQRLVSSLSI-KGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGF 529 (731)
Q Consensus 451 P~~Lr~dI~~~l~~~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~-~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~ 529 (731)
||+.|.+.......++++++++|..++++.++.++..++.+.+. +|++|+++||+++.+|||.+|.|+++. .+|++
T Consensus 2 ~p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-~~g~~-- 78 (134)
T 2d93_A 2 SSGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH-PDGKV-- 78 (134)
T ss_dssp CCSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC-SSSCE--
T ss_pred ChhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc-CCCcE--
Confidence 55556555555667889999999999999999999999999999 999999999999999999999999986 44553
Q ss_pred EEEEeeCCCCeeechhHhhhcCCCCCCCCCCcccEE-EEcceeEEEEeCHHHHHHHHHHhH
Q 035714 530 FNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTV-RAVTEVEAFALEAEDLKFVAHQFK 589 (731)
Q Consensus 530 ~~~~~l~~Gd~fGe~~ll~al~~~~~~~~p~s~~tv-~Alt~~ell~L~~~df~~l~~~~p 589 (731)
..+.+|++||+.++ +.+. ++..++ +|.++|+++.|++++|.+++++++
T Consensus 79 ---~~l~~G~~fG~~~~---~~~~------~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~ 127 (134)
T 2d93_A 79 ---ENLFMGNSFGITPT---LDKQ------YMHGIVRTKVDDCQFVCIAQQDYWRILNHVE 127 (134)
T ss_dssp ---EEECTTCEESCCSS---SCCE------ECCSEEEESSSSEEEEEEEHHHHHHHSSCCS
T ss_pred ---EEecCCCccChhHh---cCCC------cceeEEEEEecceEEEEEeHHHHHHHHHHHH
Confidence 26899999999865 2222 467788 999999999999999999987765
No 35
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.51 E-value=1.1e-13 Score=138.92 Aligned_cols=143 Identities=12% Similarity=0.145 Sum_probs=105.8
Q ss_pred CCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceEEEEEeeCCCCeeechhHhh
Q 035714 470 VPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTN-GGRDGFFNSITLQPGDFCGEELLTW 548 (731)
Q Consensus 470 vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~ll~ 548 (731)
-|.|...++.....++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.++ ..+++|++||+..+
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~--~~~~~G~~~G~~~~-- 79 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEI--DEIKPVQIIASGFI-- 79 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEE--EEECSSEESSGGGT--
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEE--EEecCCCEeeeHHH--
Confidence 366777888889999999999999999999999999999999999999999875 5777664 49999999999975
Q ss_pred hcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhHHH
Q 035714 549 ALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKLQHAFRYYSHQWRTWASCFIQSAWRKFRKRKMA 628 (731)
Q Consensus 549 al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~lq~~~r~ys~~~~~~~~~~~q~a~~r~~~R~~~ 628 (731)
+.++. ++..+++|+++|+++.|++++|.++++++|++...+++...+ ..+...++...
T Consensus 80 -~~~~~-----~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~----------------~~~~~~~~~~~ 137 (213)
T 1o5l_A 80 -FSSEP-----RFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSE----------------HFRVVSEKLFF 137 (213)
T ss_dssp -TSSSC-----BCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH----------------HHHHHHHHHHH
T ss_pred -hcCCC-----CceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH----------------HHHHHHHHHHH
Confidence 33332 578999999999999999999999999999988755433322 12334566667
Q ss_pred hhhhhhhhcC
Q 035714 629 MDLSIKESGY 638 (731)
Q Consensus 629 ~~~~~aeery 638 (731)
....++++|+
T Consensus 138 l~~~~~~~Rl 147 (213)
T 1o5l_A 138 LTTKTLREKL 147 (213)
T ss_dssp HHCC------
T ss_pred HhhCCHHHHH
Confidence 7777888887
No 36
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.51 E-value=2.5e-13 Score=142.52 Aligned_cols=127 Identities=19% Similarity=0.249 Sum_probs=109.6
Q ss_pred HHHHHHHhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEec-CC-cceEEEEEeeCCC
Q 035714 461 HLCIALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTN-GG-RDGFFNSITLQPG 538 (731)
Q Consensus 461 ~l~~~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~-~g-~~~~~~~~~l~~G 538 (731)
.+...+++++++|..+++..+..++..++.+.|.+|++|+++||+++.+|||.+|.|+++... +| ++.. +..+++|
T Consensus 153 ~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~--~~~l~~G 230 (291)
T 2qcs_B 153 KMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVE--VGRLGPS 230 (291)
T ss_dssp HHHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEE--EEEECTT
T ss_pred HHHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEE--EEEeCCC
Confidence 344577889999999999999999999999999999999999999999999999999998765 33 2333 5699999
Q ss_pred CeeechhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHHHH
Q 035714 539 DFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKLQH 598 (731)
Q Consensus 539 d~fGe~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~lq~ 598 (731)
++|||.++ +.+. +++++++|.++|+++.|++++|.+++.++|++..+.++.
T Consensus 231 ~~fGe~~l---l~~~------~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~ 281 (291)
T 2qcs_B 231 DYFGEIAL---LMNR------PKAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQ 281 (291)
T ss_dssp CEECSGGG---TCCC------CCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHH
T ss_pred CEecHHHH---cCCC------CcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHH
Confidence 99999976 3332 589999999999999999999999999999887765543
No 37
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.49 E-value=7e-14 Score=147.52 Aligned_cols=127 Identities=20% Similarity=0.396 Sum_probs=111.9
Q ss_pred HHHHHHHhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEec--CCcceEEEEEeeCCC
Q 035714 461 HLCIALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTN--GGRDGFFNSITLQPG 538 (731)
Q Consensus 461 ~l~~~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~--~g~~~~~~~~~l~~G 538 (731)
.....+++++|+|..++++.+..++..++.+.|.+|++|+++||+++.+|||.+|.|+++..+ +|++.. +..+++|
T Consensus 153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~--~~~l~~G 230 (299)
T 3shr_A 153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVF--LRTLGKG 230 (299)
T ss_dssp HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEE--EEEEETT
T ss_pred HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceE--EEEcCCC
Confidence 345778899999999999999999999999999999999999999999999999999999876 566665 4599999
Q ss_pred CeeechhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHHHH
Q 035714 539 DFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKLQH 598 (731)
Q Consensus 539 d~fGe~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~lq~ 598 (731)
++|||.++ +... +++++++|.++|+++.|++++|.+++.++|++..++++.
T Consensus 231 ~~fGe~~l---l~~~------~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~ 281 (299)
T 3shr_A 231 DWFGEKAL---QGED------VRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYED 281 (299)
T ss_dssp CEECGGGG---SSSE------ECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHH
T ss_pred CEeChHHH---hCCC------CcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHH
Confidence 99999976 3332 589999999999999999999999999999887755433
No 38
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.47 E-value=1.6e-13 Score=139.79 Aligned_cols=119 Identities=18% Similarity=0.246 Sum_probs=106.2
Q ss_pred HHHHHHhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCee
Q 035714 462 LCIALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFC 541 (731)
Q Consensus 462 l~~~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~f 541 (731)
+...+++++++|..++++.+..++..++.+.|.+|++|+++||+++.+|||.+|.++++..+++ . +..+++|++|
T Consensus 122 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~---~--~~~l~~g~~f 196 (246)
T 3of1_A 122 MYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQG---V--INKLKDHDYF 196 (246)
T ss_dssp HSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTE---E--EEEEETTCEE
T ss_pred HHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCc---e--EEEcCCCCcc
Confidence 3456788999999999999999999999999999999999999999999999999999886654 2 5699999999
Q ss_pred echhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHH
Q 035714 542 GEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSK 594 (731)
Q Consensus 542 Ge~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k 594 (731)
||.+++ ... +++++++|.++|+++.|++++|.+++..+|++..+
T Consensus 197 Ge~~~~---~~~------~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~~~ 240 (246)
T 3of1_A 197 GEVALL---NDL------PRQATVTATKRTKVATLGKSGFQRLLGPAVDVLKL 240 (246)
T ss_dssp CHHHHH---HTC------BCSSEEEESSCEEEEEEEHHHHHHHCTTHHHHHHH
T ss_pred cHHHHh---CCC------CcccEEEECCCEEEEEEeHHHHHHHhccHHHHHhc
Confidence 999874 333 58999999999999999999999999999987653
No 39
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.46 E-value=3.2e-13 Score=149.90 Aligned_cols=129 Identities=16% Similarity=0.237 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEe
Q 035714 455 RREIQRHLCIALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSIT 534 (731)
Q Consensus 455 r~dI~~~l~~~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~ 534 (731)
|.+-......++++++++|.+++++.+..|+..++.+.|.+|++|+++||.++.+|||.+|.|+++...+|++..+ ..
T Consensus 135 ks~~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~~v--~~ 212 (416)
T 3tnp_B 135 KTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCV--GN 212 (416)
T ss_dssp CCHHHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEEEE--EE
T ss_pred CCHHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEEEE--EE
Confidence 3344455678899999999999999999999999999999999999999999999999999999998777877764 49
Q ss_pred eCCCCeeechhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHH
Q 035714 535 LQPGDFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSK 594 (731)
Q Consensus 535 l~~Gd~fGe~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k 594 (731)
+.+|++|||.++ +.+. ++.++++|.++|+++.|++++|..++.++|.+..+
T Consensus 213 l~~G~~fGe~al---l~~~------pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~~ 263 (416)
T 3tnp_B 213 YDNRGSFGELAL---MYNT------PKAATITATSPGALWGLDRVTFRRIIVKNNAKKRK 263 (416)
T ss_dssp EESCCEECGGGG---TSCC------CCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHSS
T ss_pred ecCCCEEeeHHH---hcCC------CcccEEEEccCeEEEEEeehhhhhhhhcchhHHHH
Confidence 999999999976 3333 58999999999999999999999999999977653
No 40
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.46 E-value=4.3e-13 Score=140.67 Aligned_cols=128 Identities=16% Similarity=0.273 Sum_probs=111.6
Q ss_pred HHHHHHHHHhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCC
Q 035714 459 QRHLCIALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPG 538 (731)
Q Consensus 459 ~~~l~~~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~G 538 (731)
......++++++|+|..++++.+..++..++.+.|++|++|+++||+++.+|+|.+|.|+++. +|. . +..+.+|
T Consensus 33 ~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~g~--~--~~~l~~G 106 (291)
T 2qcs_B 33 TMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NNE--W--ATSVGEG 106 (291)
T ss_dssp HHHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE--TTE--E--EEEECTT
T ss_pred HHHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE--CCe--E--EEEcCCC
Confidence 345568899999999999999999999999999999999999999999999999999999988 342 2 5699999
Q ss_pred CeeechhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 035714 539 DFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKLQHAFR 601 (731)
Q Consensus 539 d~fGe~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~lq~~~r 601 (731)
++|||.++ +. +. ++.++++|.++|+++.|++++|..++.++|.+..+.++...+
T Consensus 107 ~~fGe~~l---~~-~~-----~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (291)
T 2qcs_B 107 GSFGELAL---IY-GT-----PRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLS 160 (291)
T ss_dssp CEECGGGG---TC-CC-----BCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchHHH---hc-CC-----CCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHh
Confidence 99999865 23 22 589999999999999999999999999999888766555443
No 41
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.45 E-value=2.5e-13 Score=138.32 Aligned_cols=121 Identities=17% Similarity=0.193 Sum_probs=105.9
Q ss_pred HHHHHhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeee
Q 035714 463 CIALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCG 542 (731)
Q Consensus 463 ~~~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 542 (731)
..++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++. +|+. +..+.+|++||
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~--~~~~----~~~~~~g~~fG 78 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV--NDNK----VNSSGPGSSFG 78 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES--TTSC----CEEECTTCEEC
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE--CCEE----EEecCCCCeee
Confidence 46788999999999999999999999999999999999999999999999999999986 3332 45899999999
Q ss_pred chhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHHHH
Q 035714 543 EELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKLQH 598 (731)
Q Consensus 543 e~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~lq~ 598 (731)
|.+++ .+. +++++++|.++|+++.|++++|..++.++|.........
T Consensus 79 e~~l~---~~~------~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 125 (246)
T 3of1_A 79 ELALM---YNS------PRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDD 125 (246)
T ss_dssp HHHHH---HTC------CCSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHSHH
T ss_pred hhHHh---cCC------CCCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHHHH
Confidence 99773 223 589999999999999999999999999999766554433
No 42
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.43 E-value=2.3e-13 Score=149.30 Aligned_cols=128 Identities=18% Similarity=0.223 Sum_probs=111.0
Q ss_pred HHHHHHHhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEec-CCc-ceEEEEEeeCCC
Q 035714 461 HLCIALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTN-GGR-DGFFNSITLQPG 538 (731)
Q Consensus 461 ~l~~~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~-~g~-~~~~~~~~l~~G 538 (731)
.++..+++++++|..+++..+..++..++...|.+|++|+++||.++.+|||.+|.|+++..+ +|+ ... +..+++|
T Consensus 244 ~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~--v~~l~~G 321 (381)
T 4din_B 244 KMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVE--VGRLGPS 321 (381)
T ss_dssp HHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCE--EEEECTT
T ss_pred HHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEE--EEEeCCC
Confidence 445678889999999999999999999999999999999999999999999999999999875 333 333 5699999
Q ss_pred CeeechhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHHHHH
Q 035714 539 DFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKLQHA 599 (731)
Q Consensus 539 d~fGe~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~lq~~ 599 (731)
++|||.++ +... +++++++|.++|+++.|++++|.+++..+|++..+.+++.
T Consensus 322 d~fGe~al---l~~~------~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~ 373 (381)
T 4din_B 322 DYFGEIAL---LLNR------PRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRY 373 (381)
T ss_dssp CEECTTGG---GSCC------BCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHH
T ss_pred CEechHHH---hCCC------CceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999976 3333 5899999999999999999999999999998877665443
No 43
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.42 E-value=9.3e-13 Score=135.26 Aligned_cols=150 Identities=11% Similarity=0.099 Sum_probs=116.4
Q ss_pred cCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceEEEEEeeCCCCeeechhHh
Q 035714 469 RVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTN-GGRDGFFNSITLQPGDFCGEELLT 547 (731)
Q Consensus 469 ~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~ll 547 (731)
++..+..++++.++.+...++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+. ..+++|++||+ .+
T Consensus 13 ~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~--~~~~~G~~~G~-~l- 88 (250)
T 3e6c_C 13 AIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLL--YYAGGNSLIGK-LY- 88 (250)
T ss_dssp CSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEE--EEECTTCEECC-CS-
T ss_pred hccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEE--EEecCCCEEee-ec-
Confidence 3334488999999999999999999999999999999999999999999999875 6777664 49999999999 32
Q ss_pred hhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhHH
Q 035714 548 WALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKLQHAFRYYSHQWRTWASCFIQSAWRKFRKRKM 627 (731)
Q Consensus 548 ~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~lq~~~r~ys~~~~~~~~~~~q~a~~r~~~R~~ 627 (731)
.+ . +..+++|+++|+++.|++++|.+++.++|++...+++...+.. +.....+..........|..
T Consensus 89 ---~~------~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l----~~~~~~~~~~~~~~~~~Rl~ 154 (250)
T 3e6c_C 89 ---PT------G-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTKV----AYYARQVAEMNTYNPTIRIL 154 (250)
T ss_dssp ---CC------S-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHHH----HHHHHHHHHHTTSCHHHHHH
T ss_pred ---CC------C-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHH----HHHHHHHHHHhcCCHHHHHH
Confidence 21 2 6789999999999999999999999999999886655544332 22333333334444555666
Q ss_pred Hhhhhhhhh
Q 035714 628 AMDLSIKES 636 (731)
Q Consensus 628 ~~~~~~aee 636 (731)
..++..+++
T Consensus 155 ~~L~~l~~~ 163 (250)
T 3e6c_C 155 RLFYELCSS 163 (250)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 655555443
No 44
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.40 E-value=9.6e-13 Score=144.34 Aligned_cols=128 Identities=14% Similarity=0.269 Sum_probs=111.0
Q ss_pred HHHHHHHHHHhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCC
Q 035714 458 IQRHLCIALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQP 537 (731)
Q Consensus 458 I~~~l~~~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~ 537 (731)
-.+....++++++++|.+++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+++. +|+ . +..+.+
T Consensus 123 ~~~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~--~~~--~--v~~l~~ 196 (381)
T 4din_B 123 KTMTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV--NGE--W--VTNISE 196 (381)
T ss_dssp HHHHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE--TTE--E--EEEEES
T ss_pred HHHHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE--CCe--E--eeeCCC
Confidence 3445567899999999999999999999999999999999999999999999999999999996 333 2 458999
Q ss_pred CCeeechhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHHHHHH
Q 035714 538 GDFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKLQHAF 600 (731)
Q Consensus 538 Gd~fGe~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~lq~~~ 600 (731)
|++|||.++ +.+. ++.++++|.++|+++.|++++|..++.++|.+..+.+....
T Consensus 197 G~~fGe~al---l~~~------~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L 250 (381)
T 4din_B 197 GGSFGELAL---IYGT------PRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFL 250 (381)
T ss_dssp SCCBCGGGG---TSCC------BCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEchHH---hcCC------CcceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHHh
Confidence 999999976 3333 58999999999999999999999999999988776554433
No 45
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.40 E-value=8.5e-13 Score=125.84 Aligned_cols=64 Identities=14% Similarity=0.268 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhhcccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Q 035714 339 RKILYCLWWGLRTLSSYAQELDTSIYVEENLLAIFICILGSVLFALLIGNMQTYFQSMSVRIEE 402 (731)
Q Consensus 339 ~~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~ilfa~lIg~~~~~l~~~~~~~~e 402 (731)
..|..|+||++.|+||+||||++|.+..+++++++.+++|++++|+++|.+.+.+.+...+.++
T Consensus 83 ~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~~~~ 146 (155)
T 2a9h_A 83 ISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQERRG 146 (155)
T ss_dssp TSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC----
T ss_pred CcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999999999999999876654433
No 46
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.39 E-value=1.7e-12 Score=145.83 Aligned_cols=135 Identities=19% Similarity=0.228 Sum_probs=119.0
Q ss_pred hCChhhHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEec-CCcc
Q 035714 449 SLPVDLRREIQRHLCIALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTN-GGRD 527 (731)
Q Consensus 449 ~LP~~Lr~dI~~~l~~~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~-~g~~ 527 (731)
..|+..|.+.......+.++++++|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++
T Consensus 26 ~~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~ 105 (469)
T 1o7f_A 26 DKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQ 105 (469)
T ss_dssp TSCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGG
T ss_pred cCChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCC
Confidence 467888888888888999999999999999999999999999999999999999999999999999999999875 4442
Q ss_pred --eEEEEEeeCCCCeeechhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHH
Q 035714 528 --GFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKK 595 (731)
Q Consensus 528 --~~~~~~~l~~Gd~fGe~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~ 595 (731)
.. +..+++|++||+.+ + .+. +++++++|.++|+++.|++++|..++.++|++...+
T Consensus 106 ~~~~--~~~~~~G~~fGe~~-l---~~~------~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~~~l 163 (469)
T 1o7f_A 106 DAVT--ICTLGIGTAFGESI-L---DNT------PRHATIVTRESSELLRIEQEDFKALWEKYRQYMAGL 163 (469)
T ss_dssp GCEE--EEEECTTCEECGGG-G---GTC------BCSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTTT
T ss_pred cceE--EEEccCCCCcchhh-h---CCC------CccceEEEccceeEEEEcHHHHHHHHHhCHHHHHHH
Confidence 34 56999999999985 2 222 589999999999999999999999999999876544
No 47
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.39 E-value=8.1e-12 Score=127.31 Aligned_cols=146 Identities=12% Similarity=0.069 Sum_probs=111.0
Q ss_pred cchHHHHHHHHh--hcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceEEEEEeeCCCCeeechhHhhhcC
Q 035714 475 QMDDQLLDAICQ--RLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTN-GGRDGFFNSITLQPGDFCGEELLTWALT 551 (731)
Q Consensus 475 ~ls~~~l~~L~~--~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~ll~al~ 551 (731)
+++++.+..+.. .++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+.. ++ +|++||+.++ +.
T Consensus 3 ~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~--~~-~G~~~Ge~~~---~~ 76 (238)
T 2bgc_A 3 NAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQ--YY-KGAFVIMSGF---ID 76 (238)
T ss_dssp -CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEE--EE-ESSEEEESBC---TT
T ss_pred CCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEE--Ec-CCCEecchhh---hc
Confidence 578888998885 5999999999999999999999999999999999865 57776654 77 9999999975 33
Q ss_pred CCCCCCCCC-cccEEEEc-ceeEEEEeCHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhHHHh
Q 035714 552 PNSTLNLPS-STRTVRAV-TEVEAFALEAEDLKFVAHQFKRLHSKKLQHAFRYYSHQWRTWASCFIQSAWRKFRKRKMAM 629 (731)
Q Consensus 552 ~~~~~~~p~-s~~tv~Al-t~~ell~L~~~df~~l~~~~p~l~~k~lq~~~r~ys~~~~~~~~~~~q~a~~r~~~R~~~~ 629 (731)
+.+ + +..++.|+ ++|+++.|++++|.+++.++|++...+++...+ ..+.....+..........|....
T Consensus 77 ~~~-----~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~----~l~~~~~~~~~~~~~~~~~Rla~~ 147 (238)
T 2bgc_A 77 TET-----SVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQK----QVSYSLAKFNDFSINGKLGSICSQ 147 (238)
T ss_dssp TCC-----BSCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH----HHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred CCC-----cCcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH----HHHHHHHHHHHHHccCHHHHHHHH
Confidence 321 1 36778888 599999999999999999999998876655443 333334444444555566666666
Q ss_pred hhhhhh
Q 035714 630 DLSIKE 635 (731)
Q Consensus 630 ~~~~ae 635 (731)
++..++
T Consensus 148 L~~l~~ 153 (238)
T 2bgc_A 148 LLILTY 153 (238)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665544
No 48
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.39 E-value=4.2e-12 Score=129.94 Aligned_cols=146 Identities=17% Similarity=0.160 Sum_probs=111.5
Q ss_pred HHHHHHHHhhcE---EEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceEEEEEeeCCCCeeechhHhhhcCCC
Q 035714 478 DQLLDAICQRLV---SSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTN-GGRDGFFNSITLQPGDFCGEELLTWALTPN 553 (731)
Q Consensus 478 ~~~l~~L~~~l~---~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~ll~al~~~ 553 (731)
+++++.+..... .+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+. .++++|++||+.++ +.+.
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l--~~~~~g~~~G~~~~---~~~~ 104 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITV--ALLRENSVFGVLSL---LTGN 104 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEE--EEECTTCEESCHHH---HSSC
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEE--EEecCCCEEcchHH---hCCC
Confidence 677788888877 9999999999999999999999999999999765 5777664 49999999999876 3333
Q ss_pred CCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhHHHhhhhh
Q 035714 554 STLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKLQHAFRYYSHQWRTWASCFIQSAWRKFRKRKMAMDLSI 633 (731)
Q Consensus 554 ~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~lq~~~r~ys~~~~~~~~~~~q~a~~r~~~R~~~~~~~~ 633 (731)
+ .++..+++|+++|+++.|++++|.++++++|++...+++...+. .+.....+..........|....++..
T Consensus 105 ~----~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~----l~~~~~~~~~l~~~~~~~Rla~~L~~l 176 (243)
T 3la7_A 105 K----SDRFYHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSSR----ILQTEMMIETLAHRDMGSRLVSFLLIL 176 (243)
T ss_dssp C----SBCCEEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHH----HHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred C----CcceEEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHH----HHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 2 02458999999999999999999999999999988765544332 222333333334445566776666666
Q ss_pred hhh
Q 035714 634 KES 636 (731)
Q Consensus 634 aee 636 (731)
+++
T Consensus 177 ~~~ 179 (243)
T 3la7_A 177 CRD 179 (243)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 49
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.38 E-value=2.2e-12 Score=122.41 Aligned_cols=86 Identities=15% Similarity=0.093 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhhcccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHh----ccHHHHHHHHHHHHH
Q 035714 341 ILYCLWWGLRTLSSYAQELDTSIYVEENLLAIFICILGSVLFALLIGNMQT------YFQS----MSVRIEEWRIKRRDT 410 (731)
Q Consensus 341 Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~ilfa~lIg~~~~------~l~~----~~~~~~e~~~k~~~~ 410 (731)
|..|+||++.|+||+||||++|.+..+++|+++.+++|++++++++|++.. +.+. .+....+.+.+++++
T Consensus 53 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i 132 (148)
T 3vou_A 53 PLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAI 132 (148)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999886 3332 345556667788899
Q ss_pred HHHHHhCCCChHHHHH
Q 035714 411 EEWMRHRQLPPDLQER 426 (731)
Q Consensus 411 ~~~m~~~~Lp~~L~~R 426 (731)
+++|+.++.|++|+.|
T Consensus 133 ~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 133 EKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHTTC------
T ss_pred HHHHHhcCCCcCCCCC
Confidence 9999999999999876
No 50
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.37 E-value=1.3e-12 Score=144.95 Aligned_cols=122 Identities=12% Similarity=0.245 Sum_probs=104.7
Q ss_pred HHHHHhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecC-------CcceEEEEEee
Q 035714 463 CIALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNG-------GRDGFFNSITL 535 (731)
Q Consensus 463 ~~~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~-------g~~~~~~~~~l 535 (731)
+..+++++++|..++++.+..++..++.+.|.+|++|+++||+++.+|||.+|.|+++..+. |++.. +..+
T Consensus 265 ~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~--l~~l 342 (416)
T 3tnp_B 265 YESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVE--IARC 342 (416)
T ss_dssp SSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CE--EEEE
T ss_pred HHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeE--EEEe
Confidence 34567888999999999999999999999999999999999999999999999999997654 55555 4599
Q ss_pred CCCCeeechhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHH
Q 035714 536 QPGDFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKK 595 (731)
Q Consensus 536 ~~Gd~fGe~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~ 595 (731)
++|++|||.++ +... +++++|+|.++|+++.|++++|.+++..+|++..+.
T Consensus 343 ~~G~~fGE~al---l~~~------~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~ 393 (416)
T 3tnp_B 343 FRGQYFGELAL---VTNK------PRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRN 393 (416)
T ss_dssp CTTCEESGGGG---TCCS------CCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC
T ss_pred CCCCEecHHHH---hCCC------CceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHH
Confidence 99999999976 3333 589999999999999999999999999999876644
No 51
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.36 E-value=2.1e-12 Score=144.97 Aligned_cols=123 Identities=14% Similarity=0.223 Sum_probs=103.9
Q ss_pred HHHHHHHHHhcCCcCCcchHHHHHHHHhhcEE-EEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCC
Q 035714 459 QRHLCIALVRRVPFFSQMDDQLLDAICQRLVS-SLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQP 537 (731)
Q Consensus 459 ~~~l~~~ll~~vp~F~~ls~~~l~~L~~~l~~-~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~ 537 (731)
......+.++++++|..++++.+..++..++. +.|++|++|+++||.++.+|||.+|.|+++..++ .+ +..+.+
T Consensus 331 ~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~---~~--~~~l~~ 405 (469)
T 1o7f_A 331 DLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGK---GV--VCTLHE 405 (469)
T ss_dssp HHHHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTT---EE--EEEEET
T ss_pred HHHHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCC---ee--EEEecC
Confidence 34445788999999999999999999999985 5999999999999999999999999999987432 23 569999
Q ss_pred CCeeechhHhhhcCCCCCCCCCCcccEEEEcc-eeEEEEeCHHHHHHHHHHhHHHHHHH
Q 035714 538 GDFCGEELLTWALTPNSTLNLPSSTRTVRAVT-EVEAFALEAEDLKFVAHQFKRLHSKK 595 (731)
Q Consensus 538 Gd~fGe~~ll~al~~~~~~~~p~s~~tv~Alt-~~ell~L~~~df~~l~~~~p~l~~k~ 595 (731)
|++|||.++ +... +++++++|++ +|+++.|++++|..+++++|++..++
T Consensus 406 G~~fGe~~l---l~~~------~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l 455 (469)
T 1o7f_A 406 GDDFGKLAL---VNDA------PRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRL 455 (469)
T ss_dssp TCEECGGGG---TCCS------CCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC----
T ss_pred CCEEEEehh---hcCC------CceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHH
Confidence 999999976 3322 5899999999 69999999999999999999876654
No 52
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.35 E-value=1.5e-12 Score=121.79 Aligned_cols=92 Identities=14% Similarity=0.241 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhhcccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhCCCC
Q 035714 341 ILYCLWWGLRTLSSYAQELDTSIYVEENLLAIFICILGSVLFALLIGNMQTYFQSMSVRIEEWRIKRRDTEEWMRHRQLP 420 (731)
Q Consensus 341 Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~ilfa~lIg~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~Lp 420 (731)
|..|+||++.|+||+||||++|.+..+++++++++++|++++|+++|.+++.+.....+..+.+...+..+...+..+++
T Consensus 44 ~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (137)
T 4h33_A 44 YPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDLT 123 (137)
T ss_dssp HHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC---------------------
T ss_pred HHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 77899999999999999999999999999999999999999999999999998765554444333333333334445566
Q ss_pred hHHHHHHHHHHH
Q 035714 421 PDLQERVHQFVQ 432 (731)
Q Consensus 421 ~~L~~RV~~y~~ 432 (731)
++.+..+++|.+
T Consensus 124 ~~~i~~l~~~l~ 135 (137)
T 4h33_A 124 KEEIAVVEQFLT 135 (137)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHh
Confidence 666666666554
No 53
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.28 E-value=2.1e-11 Score=149.76 Aligned_cols=135 Identities=21% Similarity=0.261 Sum_probs=111.1
Q ss_pred HHhhCChhhHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHhhcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecC-
Q 035714 446 ILRSLPVDLRREIQRHLCIALVRRVPFFSQMDDQLLDAICQRLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNG- 524 (731)
Q Consensus 446 ll~~LP~~Lr~dI~~~l~~~ll~~vp~F~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~- 524 (731)
.|+.-| .-|.+--..+....|+++++|+++++..+.+||..++.+.+.+|++|+++||+++.+|+|.+|.|.++..+.
T Consensus 24 ~L~K~p-~~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~ 102 (999)
T 4f7z_A 24 CLDKRP-LERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETS 102 (999)
T ss_dssp HHHSCS-SSCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSS
T ss_pred HhcCCc-ccCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCC
Confidence 444443 445333334556789999999999999999999999999999999999999999999999999999987642
Q ss_pred --CcceEEEEEeeCCCCeeechhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCHHHHHHHHHHhHHHHH
Q 035714 525 --GRDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEAEDLKFVAHQFKRLHS 593 (731)
Q Consensus 525 --g~~~~~~~~~l~~Gd~fGe~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~ 593 (731)
+.+.. +..+++|+.||| ++ +... +|++|++|.++|++++|++++|+.++.++|+...
T Consensus 103 ~~~~~~~--v~~l~~G~sFGE-al---l~n~------pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~~ 161 (999)
T 4f7z_A 103 SHQDAVT--ICTLGIGTAFGE-SI---LDNT------PRHATIVTRESSELLRIEQEDFKALWEKYRQYMA 161 (999)
T ss_dssp CTTSCEE--EEEEETTCEECG-GG---GGTC------CCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHT
T ss_pred CCCCcee--EEEecCCcchhh-hh---ccCC------CcceEEEeccceEEEEEEHHHHHHHHHhChHHHH
Confidence 22333 569999999999 54 2322 5999999999999999999999999999997544
No 54
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.27 E-value=1.5e-11 Score=112.55 Aligned_cols=57 Identities=21% Similarity=0.375 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhhcccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035714 340 KILYCLWWGLRTLSSYAQELDTSIYVEENLLAIFICILGSVLFALLIGNMQTYFQSM 396 (731)
Q Consensus 340 ~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~ilfa~lIg~~~~~l~~~ 396 (731)
.|..|+||++.|+||+||||++|.+..+++++++.+++|++++++.+|.+.+.+.+.
T Consensus 61 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~ 117 (122)
T 2ih3_C 61 TYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGR 117 (122)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999998643
No 55
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.20 E-value=3.6e-11 Score=141.24 Aligned_cols=133 Identities=17% Similarity=0.258 Sum_probs=111.8
Q ss_pred HHHHhhCChhhHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHhhcE-EEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEe
Q 035714 444 ESILRSLPVDLRREIQRHLCIALVRRVPFFSQMDDQLLDAICQRLV-SSLSIKGTYIVREGDPVNEMLFIIRGTLESSTT 522 (731)
Q Consensus 444 ~~ll~~LP~~Lr~dI~~~l~~~ll~~vp~F~~ls~~~l~~L~~~l~-~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~ 522 (731)
..+++. |+..|.+.......+.++++++|.+++++.++.++..+. .+.|++|++|+++||+++.+|||.+|.|+++..
T Consensus 12 r~iL~k-~p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~ 90 (694)
T 3cf6_E 12 RMILRK-PPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY 90 (694)
T ss_dssp HHHHHS-CGGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred HHHHcC-ChhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe
Confidence 445654 444455445555678999999999999999999999998 789999999999999999999999999999875
Q ss_pred cCCcceEEEEEeeCCCCeeechhHhhhcCCCCCCCCCCcccEEEEcc-eeEEEEeCHHHHHHHHHHhHHH
Q 035714 523 NGGRDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRAVT-EVEAFALEAEDLKFVAHQFKRL 591 (731)
Q Consensus 523 ~~g~~~~~~~~~l~~Gd~fGe~~ll~al~~~~~~~~p~s~~tv~Alt-~~ell~L~~~df~~l~~~~p~l 591 (731)
+ + .+ +.++.+|++|||.+++ .+. ++.++++|++ +|+++.|++++|.++++++|.+
T Consensus 91 g--~-~i--l~~l~~Gd~fGe~al~---~~~------~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l 146 (694)
T 3cf6_E 91 G--K-GV--VCTLHEGDDFGKLALV---NDA------PRAASIVLREDNCHFLRVDKEDFNRILRDVEAN 146 (694)
T ss_dssp T--T-EE--EEEEETTCEECHHHHH---HTC------BCSSEEEECSSSEEEEEEEHHHHHHHTTTTCCC
T ss_pred C--C-EE--EEEeCCCCEeehHHHh---CCC------CceEEEEEeeCceEEEEEeHHHHHHHHHHCHHH
Confidence 3 3 33 5699999999998763 222 4889999999 5999999999999999999865
No 56
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.19 E-value=9.5e-11 Score=115.46 Aligned_cols=122 Identities=19% Similarity=0.152 Sum_probs=89.2
Q ss_pred EEecCCCEEEcCCCCcCeEEEEEeeEEEEEEec-CCcceEEEEEeeCCCCeeechhHhhhcCCCCCCCCCCcccEEEEcc
Q 035714 491 SLSIKGTYIVREGDPVNEMLFIIRGTLESSTTN-GGRDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRAVT 569 (731)
Q Consensus 491 ~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~ll~al~~~~~~~~p~s~~tv~Alt 569 (731)
+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ +..+.+|++||+ ++ +.+. ++.++++|++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~Ge-~~---~~~~------~~~~~~~A~~ 69 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLIT--LRHVLPGDYFGE-EA---LEGK------AYRYTAEAMT 69 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEE--EEEECTTCEECG-GG---GTCS------BCSSEEEESS
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEech-hh---hCCC------CceeEEEECC
Confidence 579999999999999999999999999999775 566666 459999999999 76 3333 4889999999
Q ss_pred eeEEEEeCHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhHHHhhhhhh
Q 035714 570 EVEAFALEAEDLKFVAHQFKRLHSKKLQHAFRYYSHQWRTWASCFIQSAWRKFRKRKMAMDLSIK 634 (731)
Q Consensus 570 ~~ell~L~~~df~~l~~~~p~l~~k~lq~~~r~ys~~~~~~~~~~~q~a~~r~~~R~~~~~~~~a 634 (731)
+|+++.|++++|. |++...+++...+ ..+.....+..........|....++..+
T Consensus 70 ~~~v~~i~~~~~~------p~~~~~~~~~l~~----~l~~~~~~~~~l~~~~~~~Rl~~~L~~l~ 124 (195)
T 3b02_A 70 EAVVQGLEPRAMD------HEALHRVARNLAR----QMRRVQAYEAHLQTGELRARIARYLLFLA 124 (195)
T ss_dssp SEEEEEECGGGCC------HHHHHHHHHHHHH----HHHHHHHHHHHHTSSCHHHHHHHHHHHHT
T ss_pred cEEEEEEcHHHcC------HHHHHHHHHHHHH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999998 8777655444332 22223333333333444455555544443
No 57
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.14 E-value=1.7e-10 Score=108.09 Aligned_cols=58 Identities=19% Similarity=0.377 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhhcccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 035714 340 KILYCLWWGLRTLSSYAQELDTSIYVEENLLAIFICILGSVLFALLIGNMQTYFQSMS 397 (731)
Q Consensus 340 ~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~ilfa~lIg~~~~~l~~~~ 397 (731)
.|..|+||++.|+||+||||++|.+..+++++++.+++|+++++++++.+...+....
T Consensus 40 ~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~ 97 (139)
T 3eff_K 40 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGRE 97 (139)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHH
T ss_pred CHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999999999999998876543
No 58
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.12 E-value=2.1e-10 Score=140.81 Aligned_cols=115 Identities=14% Similarity=0.229 Sum_probs=98.6
Q ss_pred HHHHHHHhcCCcCCcchHHHHHHHHhhcEEEE-ecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCC
Q 035714 461 HLCIALVRRVPFFSQMDDQLLDAICQRLVSSL-SIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGD 539 (731)
Q Consensus 461 ~l~~~ll~~vp~F~~ls~~~l~~L~~~l~~~~-~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd 539 (731)
....+.+.++|.|++++...++.++..+.... +..|++|++|||.++.+|||.+|.|+++...++. ++.+++||
T Consensus 333 e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~~~~-----v~~L~~Gd 407 (999)
T 4f7z_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGV-----VCTLHEGD 407 (999)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETTTEE-----EEEEETTC
T ss_pred HHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcCCcc-----eEEecCCC
Confidence 34467889999999999999999999999755 5779999999999999999999999998643332 56899999
Q ss_pred eeechhHhhhcCCCCCCCCCCcccEEEEcce-eEEEEeCHHHHHHHHHHhH
Q 035714 540 FCGEELLTWALTPNSTLNLPSSTRTVRAVTE-VEAFALEAEDLKFVAHQFK 589 (731)
Q Consensus 540 ~fGe~~ll~al~~~~~~~~p~s~~tv~Alt~-~ell~L~~~df~~l~~~~p 589 (731)
+|||.++ +... ||.+||+|.++ |++++|+++||.+++.+-.
T Consensus 408 ~FGElAL---L~~~------PR~aTV~a~~d~c~fl~i~k~df~~il~~~e 449 (999)
T 4f7z_A 408 DFGKLAL---VNDA------PRAASIVLREDNCHFLRVDKEDGNRILRDVE 449 (999)
T ss_dssp EECGGGG---TCSC------BCSSEEEESSSSEEEEEEEHHHHHHHHHHHH
T ss_pred cccchhh---ccCC------CeeEEEEEecCceEEEEeeHHHHHHHHhHHH
Confidence 9999976 3333 69999999985 9999999999999997743
No 59
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.11 E-value=2.2e-10 Score=113.31 Aligned_cols=128 Identities=20% Similarity=0.173 Sum_probs=91.3
Q ss_pred HhhcEEEEecCCCEEEcCCCCc--CeEEEEEeeEEEEEEec-CCcceEEEEEeeCCCCeeechhHhhhcCCCCCCCCCCc
Q 035714 485 CQRLVSSLSIKGTYIVREGDPV--NEMLFIIRGTLESSTTN-GGRDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSS 561 (731)
Q Consensus 485 ~~~l~~~~~~~ge~I~~eGd~~--~~myfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~ll~al~~~~~~~~p~s 561 (731)
...++.+.|++|++|+++||++ +.+|||.+|.|+++..+ +|++.++ ..+.+|++||+ +++ .+. ++
T Consensus 2 ~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~--~~~~~g~~~G~-~~l---~~~------~~ 69 (202)
T 2zcw_A 2 TQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTL--RLVRPGGFFGE-EAL---FGQ------ER 69 (202)
T ss_dssp ----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEE--EEECTTCEECT-HHH---HTC------CB
T ss_pred CccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEE--EEecCCCEeee-hhc---CCC------Cc
Confidence 4567889999999999999999 99999999999999775 5777664 49999999999 653 333 47
Q ss_pred ccEEEEcceeEEEEeCHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhHHHhhhhhhh
Q 035714 562 TRTVRAVTEVEAFALEAEDLKFVAHQFKRLHSKKLQHAFRYYSHQWRTWASCFIQSAWRKFRKRKMAMDLSIKE 635 (731)
Q Consensus 562 ~~tv~Alt~~ell~L~~~df~~l~~~~p~l~~k~lq~~~r~ys~~~~~~~~~~~q~a~~r~~~R~~~~~~~~ae 635 (731)
..+++|+++|+++.| +++|. |++...+++...+ ..+.....+..........|....++..++
T Consensus 70 ~~~~~A~~~~~v~~i-~~~~~------p~~~~~~~~~l~~----~l~~~~~~~~~~~~~~~~~Rl~~~L~~l~~ 132 (202)
T 2zcw_A 70 IYFAEAATDVRLEPL-PENPD------PELLKDLAQHLSQ----GLAEAYRRIERLATQRLKNRMAAALLELSE 132 (202)
T ss_dssp CSEEEESSCEEEEEC-CSSCC------HHHHHHHHHHHHH----HHHHHHHHHHHHHHCCHHHHHHHHHHHHTT
T ss_pred ceEEEEcccEEEEEE-hHhcC------HHHHHHHHHHHHH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 899999999999999 99886 7776655443332 333333333334444455566555555443
No 60
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.08 E-value=5.3e-10 Score=117.51 Aligned_cols=61 Identities=7% Similarity=0.048 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHhhcccccC-ccc-cCchhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Q 035714 338 YRKILYCLWWGLRTLSSYAQE-LDT-SIYVEE----NLLAIFICILGSVLFALLIGNMQTYFQSMSV 398 (731)
Q Consensus 338 ~~~Y~~slyw~l~tlstvG~g-d~~-~~~~~E----~~f~i~i~i~G~ilfa~lIg~~~~~l~~~~~ 398 (731)
+..+..|+||+++++||+||| |+. |.+... ..|.+++++.|.++.++.+|.+.+.++....
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~ 244 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQ 244 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678999999999999999 885 665543 8899999999999999999999888765443
No 61
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=98.94 E-value=5.8e-09 Score=94.14 Aligned_cols=61 Identities=15% Similarity=0.116 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhhcccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Q 035714 341 ILYCLWWGLRTLSSYAQELDTSIYVEENLLAIFICILGSVLFALLIGNMQTYFQSMSVRIE 401 (731)
Q Consensus 341 Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~ilfa~lIg~~~~~l~~~~~~~~ 401 (731)
|..|+||++.|+||+||||++|.+..+++++++.+++|+.++++.++.+.+.++......+
T Consensus 50 ~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~ 110 (114)
T 2q67_A 50 PIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSN 110 (114)
T ss_dssp HHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999999865544333
No 62
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=98.85 E-value=9.9e-09 Score=89.85 Aligned_cols=54 Identities=15% Similarity=0.130 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhhcccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035714 341 ILYCLWWGLRTLSSYAQELDTSIYVEENLLAIFICILGSVLFALLIGNMQTYFQ 394 (731)
Q Consensus 341 Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~ilfa~lIg~~~~~l~ 394 (731)
|..|+||++.|+||+||||+.|.+..+++++++.+++|+.+++++++.++..++
T Consensus 33 ~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~ 86 (97)
T 3ouf_A 33 PIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQ 86 (97)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678999999999999999999999999999999999999999999999998875
No 63
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=98.81 E-value=1.2e-09 Score=96.91 Aligned_cols=58 Identities=19% Similarity=0.276 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhhcccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 035714 340 KILYCLWWGLRTLSSYAQELDTSIYVEENLLAIFICILGSVLFALLIGNMQTYFQSMS 397 (731)
Q Consensus 340 ~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~ilfa~lIg~~~~~l~~~~ 397 (731)
.|..|+||++.|++|+||||++|.+..+++++++.+++|++++++++|.+.+.+....
T Consensus 40 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~ 97 (103)
T 2k1e_A 40 SYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRRE 97 (103)
T ss_dssp CGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHH
T ss_pred cHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999998886543
No 64
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=98.72 E-value=2.5e-08 Score=84.43 Aligned_cols=53 Identities=13% Similarity=0.218 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhhcccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035714 341 ILYCLWWGLRTLSSYAQELDTSIYVEENLLAIFICILGSVLFALLIGNMQTYF 393 (731)
Q Consensus 341 Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~ilfa~lIg~~~~~l 393 (731)
|..|+||++.|++|+||||+.|.+..+++++++.+++|+.++++.++.+.+.+
T Consensus 29 ~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 29 WTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999998875
No 65
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=98.70 E-value=9.1e-10 Score=106.32 Aligned_cols=63 Identities=17% Similarity=0.359 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhhcccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Q 035714 340 KILYCLWWGLRTLSSYAQELDTSIYVEENLLAIFICILGSVLFALLIGNMQTYFQSMSVRIEE 402 (731)
Q Consensus 340 ~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~ilfa~lIg~~~~~l~~~~~~~~e 402 (731)
.|+.|+||++.|+||+||||++|.+..+++++++.+++|++++++++|.+...+.....+.++
T Consensus 67 ~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~~~ 129 (166)
T 3pjs_K 67 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQQQ 129 (166)
T ss_dssp STTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHHHHH
T ss_pred CHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466789999999999999999999999999999999999999999999999998866554444
No 66
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.55 E-value=1.3e-07 Score=99.67 Aligned_cols=55 Identities=13% Similarity=0.139 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhhcccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035714 340 KILYCLWWGLRTLSSYAQELDTSIYVEENLLAIFICILGSVLFALLIGNMQTYFQ 394 (731)
Q Consensus 340 ~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~ilfa~lIg~~~~~l~ 394 (731)
.|..++||++.|+||+||||++|.+...++++++.+++|++++|+++|.+...+.
T Consensus 82 s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~ 136 (301)
T 1xl4_A 82 SFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFT 136 (301)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999998887774
No 67
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.50 E-value=3.2e-07 Score=96.49 Aligned_cols=56 Identities=14% Similarity=0.233 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhhcccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035714 340 KILYCLWWGLRTLSSYAQELDTSIYVEENLLAIFICILGSVLFALLIGNMQTYFQS 395 (731)
Q Consensus 340 ~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~ilfa~lIg~~~~~l~~ 395 (731)
.|..|+||+++|+||+||||++|.+...++|+++.+++|+.+++++++.+++.+..
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~ 170 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGS 170 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999998854
No 68
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.47 E-value=1.1e-07 Score=101.42 Aligned_cols=56 Identities=16% Similarity=0.138 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhhcccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035714 341 ILYCLWWGLRTLSSYAQELDTSIYVEENLLAIFICILGSVLFALLIGNMQTYFQSM 396 (731)
Q Consensus 341 Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~ilfa~lIg~~~~~l~~~ 396 (731)
|..|+||++.|+||+||||++|.+..+++++++.+++|++++|+++|.+...+...
T Consensus 97 ~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~ 152 (333)
T 1p7b_A 97 FVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARP 152 (333)
T ss_dssp THHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999888644
No 69
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.38 E-value=8.5e-07 Score=94.16 Aligned_cols=56 Identities=14% Similarity=0.088 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhhcccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035714 340 KILYCLWWGLRTLSSYAQELDTSIYVEENLLAIFICILGSVLFALLIGNMQTYFQS 395 (731)
Q Consensus 340 ~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~ilfa~lIg~~~~~l~~ 395 (731)
.|..|+||++.|+||+||||++|.+...++++++.+++|++++|+++|.+...+..
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~ 133 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQ 133 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999987754
No 70
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.26 E-value=2.6e-06 Score=90.69 Aligned_cols=57 Identities=16% Similarity=0.259 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhhcccccCccccC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 035714 341 ILYCLWWGLRTLSSYAQELDTSI--YVEENLLAIFICILGSVLFALLIGNMQTYFQSMS 397 (731)
Q Consensus 341 Y~~slyw~l~tlstvG~gd~~~~--~~~E~~f~i~i~i~G~ilfa~lIg~~~~~l~~~~ 397 (731)
+..++||++.|+||+||||.+|+ +..-++++++.+++|+++.|+++|.+..-+..-.
T Consensus 92 f~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~ 150 (340)
T 3sya_A 92 FVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPK 150 (340)
T ss_dssp TTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 45789999999999999999997 5788899999999999999999998887775443
No 71
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.07 E-value=1.1e-05 Score=92.80 Aligned_cols=53 Identities=11% Similarity=0.272 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhhcccccCccccCchhhHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 035714 341 ILYCLWWGLRTLSSYAQELDTSIYVEENLLAIFICILGSVLFALLIGN-MQTYF 393 (731)
Q Consensus 341 Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~ilfa~lIg~-~~~~l 393 (731)
|+.|+||++.|+||+||||++|.+..+++|+++++++|++++++.++. +...+
T Consensus 52 ~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 105 (565)
T 4gx0_A 52 FMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMF 105 (565)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999998 44444
No 72
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.05 E-value=6.1e-06 Score=85.46 Aligned_cols=55 Identities=11% Similarity=0.169 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhhcccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035714 340 KILYCLWWGLRTLSSYAQELDTSIYVEENLLAIFICILGSVLFALLIGNMQTYFQ 394 (731)
Q Consensus 340 ~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~ilfa~lIg~~~~~l~ 394 (731)
.|..|+||+++|+||+||||++|.+...++|+++.+++|+.+++++++.+...+.
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~ 147 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRIT 147 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999887653
No 73
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.04 E-value=1.9e-05 Score=81.84 Aligned_cols=55 Identities=9% Similarity=0.045 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhhcccccCccccCchh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035714 341 ILYCLWWGLRTLSSYAQELDTSIYVE-------ENLLAIFICILGSVLFALLIGNMQTYFQS 395 (731)
Q Consensus 341 Y~~slyw~l~tlstvG~gd~~~~~~~-------E~~f~i~i~i~G~ilfa~lIg~~~~~l~~ 395 (731)
|+.|+||++.|+||+||||+.|.+.. -++++++.+++|+.+++++++.+.++++.
T Consensus 202 ~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~ 263 (280)
T 3ukm_A 202 FLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHEL 263 (280)
T ss_dssp HHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHH
T ss_pred hhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999885 49999999999999999999999988753
No 74
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.03 E-value=2.3e-05 Score=83.49 Aligned_cols=57 Identities=9% Similarity=0.219 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhhcccccCccccC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035714 340 KILYCLWWGLRTLSSYAQELDTSI--YVEENLLAIFICILGSVLFALLIGNMQTYFQSM 396 (731)
Q Consensus 340 ~Y~~slyw~l~tlstvG~gd~~~~--~~~E~~f~i~i~i~G~ilfa~lIg~~~~~l~~~ 396 (731)
.+..++||++.|+||+||||.+|+ +...++++++.+++|+++.|+++|.+..-+..-
T Consensus 94 sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp 152 (343)
T 3spc_A 94 GFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARP 152 (343)
T ss_dssp SHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 367899999999999999999864 788999999999999999999999888776543
No 75
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.01 E-value=2.7e-06 Score=89.46 Aligned_cols=59 Identities=19% Similarity=0.230 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhhcccccCccccCchhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Q 035714 341 ILYCLWWGLRTLSSYAQELDTSIYVEEN------LLAIFICILGSVLFALLIGNMQTYFQSMSVR 399 (731)
Q Consensus 341 Y~~slyw~l~tlstvG~gd~~~~~~~E~------~f~i~i~i~G~ilfa~lIg~~~~~l~~~~~~ 399 (731)
|+.|+||++.|+||+||||+.|.+..++ +|+++.+++|+.+++++++.+++.+.....+
T Consensus 225 ~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~r 289 (309)
T 3um7_A 225 KLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSRR 289 (309)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTT
T ss_pred HHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999988876 5999999999999999999999988765543
No 76
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=97.70 E-value=2.7e-06 Score=91.20 Aligned_cols=55 Identities=13% Similarity=0.232 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhhcccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035714 341 ILYCLWWGLRTLSSYAQELDTSIYVEENLLAIFICILGSVLFALLIGNMQTYFQS 395 (731)
Q Consensus 341 Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~ilfa~lIg~~~~~l~~ 395 (731)
|..|+||++.|+||+||||++|.+..+++|+++++++|+++++++++.+...+..
T Consensus 46 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (336)
T 1lnq_A 46 WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLIN 100 (336)
T ss_dssp SSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC--
T ss_pred HHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4468999999999999999999999999999999999999999999999887754
No 77
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=97.52 E-value=0.00085 Score=67.55 Aligned_cols=56 Identities=14% Similarity=0.042 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhhcccccCcccc-----CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035714 340 KILYCLWWGLRTLSSYAQELDTS-----IYVEENLLAIFICILGSVLFALLIGNMQTYFQS 395 (731)
Q Consensus 340 ~Y~~slyw~l~tlstvG~gd~~~-----~~~~E~~f~i~i~i~G~ilfa~lIg~~~~~l~~ 395 (731)
....|+||..+++|+.|++|+.. ...+=..|..++.+.+.++..+.+|.+.+-.+.
T Consensus 165 ~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfiavi~~~f~~ 225 (229)
T 4dxw_A 165 DLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLVIAILVDVVIQ 225 (229)
T ss_dssp SHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999997511 112234555666667777777888777666653
No 78
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=97.02 E-value=0.00042 Score=65.00 Aligned_cols=78 Identities=8% Similarity=0.101 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccccccccccccccCCCcchhhhhHHHHHHHHHHHHHHhhheeeecCCCCccCCCeEe
Q 035714 72 HWNYVFLATCIIALLLDPLYFFLPSVNREEACLETDGNTGFLITVFRTVADLFFVFNIFMKFRTAFVSPSSRSFGRGELV 151 (731)
Q Consensus 72 ~W~~i~li~~~~~~~~~Pl~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~d~~f~lDi~l~f~Tay~~~~s~~~~~G~lV 151 (731)
.|+.+++++.+++++++-+..+.+. +.........++.++-++|.+|.++++..+-
T Consensus 22 ~f~~~i~~lil~sv~~v~~et~~~i----------~~~~~~~~~~id~~~~~iF~~Ey~lRl~~a~-------------- 77 (147)
T 2kyh_A 22 LVELGVSYAALLSVIVVVVEYTMQL----------SGEYLVRLYLVDLILVIILWADYAYRAYKSG-------------- 77 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHhh----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------
Confidence 4777777777777766655533221 1111335678899999999999999998752
Q ss_pred ecHHHHHHHHhhhhhHHHHHhhCChhHH
Q 035714 152 MDAREIRSRYFKTDFVIDLAAALPLPQF 179 (731)
Q Consensus 152 ~d~~~Ia~~Ylks~F~iDlls~lPl~~i 179 (731)
| .++|+++ -++|++|++|+...
T Consensus 78 -~----k~~f~~~-~iiDllailP~~~~ 99 (147)
T 2kyh_A 78 -D----PAGYVKK-TLYEIPALVPAGLL 99 (147)
T ss_dssp -C----HHHHHHH-STTTHHHHCCHHHH
T ss_pred -c----HHHHHHH-HHHHHHHHHHHHHH
Confidence 1 2579988 57899999998643
No 79
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=96.40 E-value=0.003 Score=58.02 Aligned_cols=77 Identities=6% Similarity=0.096 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccccccccccccccCCCcchhhhhHHHHHHHHHHHHHHhhheeeecCCCCccCCCeEe
Q 035714 72 HWNYVFLATCIIALLLDPLYFFLPSVNREEACLETDGNTGFLITVFRTVADLFFVFNIFMKFRTAFVSPSSRSFGRGELV 151 (731)
Q Consensus 72 ~W~~i~li~~~~~~~~~Pl~~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~d~~f~lDi~l~f~Tay~~~~s~~~~~G~lV 151 (731)
.++.+++++.+++++..-+..+-+ .+......+..++.++-++|.+|+++++..+ ++
T Consensus 7 ~f~~~i~~lIlls~~~~~~et~~~----------~~~~~~~~l~~~d~~~~~iFt~E~~lRl~~~---~~---------- 63 (132)
T 1ors_C 7 LVELGVSYAALLSVIVVVVEYTMQ----------LSGEYLVRLYLVDLILVIILWADYAYRAYKS---GD---------- 63 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSC----------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TS----------
T ss_pred HHHHHHHHHHHHHHHHHHHHhchh----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC----------
Confidence 567777777666666555442211 1111234567789999999999999999864 11
Q ss_pred ecHHHHHHHHhhhhhHHHHHhhCChhH
Q 035714 152 MDAREIRSRYFKTDFVIDLAAALPLPQ 178 (731)
Q Consensus 152 ~d~~~Ia~~Ylks~F~iDlls~lPl~~ 178 (731)
.++|++ |=++|+++++|+..
T Consensus 64 ------~~~y~~-~niiDllailp~~~ 83 (132)
T 1ors_C 64 ------PAGYVK-KTLYEIPALVPAGL 83 (132)
T ss_dssp ------TTTTTT-TCGGGTGGGSCHHH
T ss_pred ------HHHHHH-HHHHHHHHHHHHHH
Confidence 147999 88999999999853
No 80
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=66.67 E-value=4.8 Score=25.95 Aligned_cols=19 Identities=21% Similarity=0.427 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHHhH
Q 035714 608 RTWASCFIQSAWRKFRKRK 626 (731)
Q Consensus 608 ~~~~~~~~q~a~~r~~~R~ 626 (731)
.++++..||.|||+|..|.
T Consensus 5 Ee~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 5 EEVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4589999999999998763
No 81
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=65.80 E-value=5.3 Score=26.61 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHHHHHHhHH
Q 035714 608 RTWASCFIQSAWRKFRKRKM 627 (731)
Q Consensus 608 ~~~~~~~~q~a~~r~~~R~~ 627 (731)
.++.+.+||.|||+|.-|..
T Consensus 5 Ee~aA~vIQrA~R~yl~rr~ 24 (31)
T 2l53_B 5 EEVSAMVIQRAFRRHLLQRS 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 56899999999999987653
No 82
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=60.54 E-value=35 Score=29.31 Aligned_cols=67 Identities=15% Similarity=0.196 Sum_probs=46.6
Q ss_pred cEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeeechhHhhhcCCCCCCCCCCcccEEEE
Q 035714 488 LVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRA 567 (731)
Q Consensus 488 l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~ll~al~~~~~~~~p~s~~tv~A 567 (731)
+....++||..+-..-.+..++++|++|.+++... ++ ...+.+||.+=-. ++ ....+++
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~i~ip-------~~-------~~H~~~~ 96 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGVD--GA-----QRRLHQGDLLYLG-------AG-------AAHDVNA 96 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEET--TE-----EEEECTTEEEEEC-------TT-------CCEEEEE
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEECEEEEEEC--CE-----EEEECCCCEEEEC-------CC-------CcEEEEe
Confidence 34567888888766666678999999999988752 33 2378999986433 11 3456777
Q ss_pred cceeEEEE
Q 035714 568 VTEVEAFA 575 (731)
Q Consensus 568 lt~~ell~ 575 (731)
.++++++.
T Consensus 97 ~~~~~~~~ 104 (114)
T 3fjs_A 97 ITNTSLLV 104 (114)
T ss_dssp SSSEEEEE
T ss_pred CCCcEEEE
Confidence 77776544
No 83
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=58.97 E-value=39 Score=33.03 Aligned_cols=68 Identities=16% Similarity=0.148 Sum_probs=52.6
Q ss_pred cEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeeechhHhhhcCCCCCCCCCCcccEEEE
Q 035714 488 LVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRA 567 (731)
Q Consensus 488 l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~ll~al~~~~~~~~p~s~~tv~A 567 (731)
+....+.||+.+=..-.+.+.+++|++|.+++... |+ ...+.+||++=-. + .....++|
T Consensus 39 ~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~~~~p-------~-------~~~H~~~a 97 (227)
T 3rns_A 39 ISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIE--NN-----KKTISNGDFLEIT-------A-------NHNYSIEA 97 (227)
T ss_dssp EEEEEECTTCEEEECSCSSCEEEEEEESEEEEEES--SC-----EEEEETTEEEEEC-------S-------SCCEEEEE
T ss_pred EEEEEECCCCccCccccCCCEEEEEEeCEEEEEEC--CE-----EEEECCCCEEEEC-------C-------CCCEEEEE
Confidence 45668899999988888899999999999998763 33 2378999886322 1 24578889
Q ss_pred cceeEEEEe
Q 035714 568 VTEVEAFAL 576 (731)
Q Consensus 568 lt~~ell~L 576 (731)
.+++.++.+
T Consensus 98 ~~~~~~l~i 106 (227)
T 3rns_A 98 RDNLKLIEI 106 (227)
T ss_dssp SSSEEEEEE
T ss_pred CCCcEEEEE
Confidence 999999877
No 84
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=58.34 E-value=42 Score=28.39 Aligned_cols=66 Identities=12% Similarity=0.136 Sum_probs=42.1
Q ss_pred EEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeeechhHhhhcCCCCCCCCCCcccEEEEcc
Q 035714 490 SSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRAVT 569 (731)
Q Consensus 490 ~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~ll~al~~~~~~~~p~s~~tv~Alt 569 (731)
...+.+|..+-....+..++++|++|.+.+.. +++ ...+.+||.+=-. ++ ....+.+.+
T Consensus 42 ~~~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i--~~~-----~~~l~~Gd~i~i~-------~~-------~~H~~~~~~ 100 (114)
T 2ozj_A 42 LFSFADGESVSEEEYFGDTLYLILQGEAVITF--DDQ-----KIDLVPEDVLMVP-------AH-------KIHAIAGKG 100 (114)
T ss_dssp EEEEETTSSCCCBCCSSCEEEEEEEEEEEEEE--TTE-----EEEECTTCEEEEC-------TT-------CCBEEEEEE
T ss_pred EEEECCCCccccEECCCCeEEEEEeCEEEEEE--CCE-----EEEecCCCEEEEC-------CC-------CcEEEEeCC
Confidence 33456777654445567899999999998765 233 3378999986322 12 234555666
Q ss_pred eeEEEEe
Q 035714 570 EVEAFAL 576 (731)
Q Consensus 570 ~~ell~L 576 (731)
++.++.+
T Consensus 101 ~~~~~~i 107 (114)
T 2ozj_A 101 RFKMLQI 107 (114)
T ss_dssp EEEEEEE
T ss_pred CcEEEEE
Confidence 7766654
No 85
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=54.09 E-value=33 Score=29.99 Aligned_cols=46 Identities=22% Similarity=0.409 Sum_probs=33.5
Q ss_pred EEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeeec
Q 035714 490 SSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCGE 543 (731)
Q Consensus 490 ~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 543 (731)
...+.||..+-.. ...+++++|++|.+++.. +|+ ...+++||.+--
T Consensus 44 ~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~--~g~-----~~~l~~GD~v~i 89 (119)
T 3lwc_A 44 YGRYAPGQSLTET-MAVDDVMIVLEGRLSVST--DGE-----TVTAGPGEIVYM 89 (119)
T ss_dssp EEEECTTCEEEEE-CSSEEEEEEEEEEEEEEE--TTE-----EEEECTTCEEEE
T ss_pred EEEECCCCCcCcc-CCCCEEEEEEeCEEEEEE--CCE-----EEEECCCCEEEE
Confidence 4567778755443 378899999999999876 344 337899998743
No 86
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=52.55 E-value=17 Score=34.36 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=28.1
Q ss_pred CcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeee
Q 035714 505 PVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCG 542 (731)
Q Consensus 505 ~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 542 (731)
+.++++++++|.+.+-..++|+.. ...+++||+|=
T Consensus 54 ~~dE~FyvlkG~m~i~v~d~g~~~---~v~l~eGE~f~ 88 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWVDGRRE---RADLKEGDIFL 88 (174)
T ss_dssp SSCEEEEEEESCEEEEEEETTEEE---EEEECTTCEEE
T ss_pred CCceEEEEEeeEEEEEEEcCCcee---eEEECCCCEEE
Confidence 468999999999999888766433 34899999984
No 87
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=52.01 E-value=64 Score=27.06 Aligned_cols=68 Identities=18% Similarity=0.187 Sum_probs=44.1
Q ss_pred cEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeeechhHhhhcCCCCCCCCCCcccEEEE
Q 035714 488 LVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRA 567 (731)
Q Consensus 488 l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~ll~al~~~~~~~~p~s~~tv~A 567 (731)
+....+.||..+-.--....++++|++|.+.+.. +|+ ...+.+||.+=-. ++ ....+.+
T Consensus 42 ~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~ip-------~~-------~~H~~~~ 100 (115)
T 1yhf_A 42 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI--DQE-----TYRVAEGQTIVMP-------AG-------IPHALYA 100 (115)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEE--TTE-----EEEEETTCEEEEC-------TT-------SCEEEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeCEEEEEE--CCE-----EEEECCCCEEEEC-------CC-------CCEEEEE
Confidence 3445677888764444456799999999998765 333 2378999987422 11 2345666
Q ss_pred cceeEEEEe
Q 035714 568 VTEVEAFAL 576 (731)
Q Consensus 568 lt~~ell~L 576 (731)
.++++++.+
T Consensus 101 ~~~~~~~~v 109 (115)
T 1yhf_A 101 VEAFQMLLV 109 (115)
T ss_dssp SSCEEEEEE
T ss_pred CCCceEEEE
Confidence 677776654
No 88
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=51.49 E-value=82 Score=26.43 Aligned_cols=68 Identities=15% Similarity=0.088 Sum_probs=44.6
Q ss_pred cEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeeechhHhhhcCCCCCCCCCCcccEEEE
Q 035714 488 LVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRA 567 (731)
Q Consensus 488 l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~ll~al~~~~~~~~p~s~~tv~A 567 (731)
+....+.||..+-.--....++++|++|.+++.. +|+ ...+.+||.+=-. +. ....+.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~ip-------~~-------~~H~~~~ 94 (116)
T 2pfw_A 36 AVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV--DGV-----IKVLTAGDSFFVP-------PH-------VDHGAVC 94 (116)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEEECEEEEE--TTE-----EEEECTTCEEEEC-------TT-------CCEEEEE
T ss_pred EEEEEECCCCcCCcEECCcceEEEEEeeEEEEEE--CCE-----EEEeCCCCEEEEC-------cC-------CceeeEe
Confidence 3455678887654333447799999999998776 333 3378999986322 11 2355666
Q ss_pred cceeEEEEe
Q 035714 568 VTEVEAFAL 576 (731)
Q Consensus 568 lt~~ell~L 576 (731)
.++++++.+
T Consensus 95 ~~~~~~l~v 103 (116)
T 2pfw_A 95 PTGGILIDT 103 (116)
T ss_dssp SSCEEEEEE
T ss_pred CCCcEEEEE
Confidence 777777766
No 89
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=48.60 E-value=19 Score=42.21 Aligned_cols=54 Identities=9% Similarity=0.236 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhhcccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035714 340 KILYCLWWGLRTLSSYAQELDTSIYVEENLLAIFICILGSVLFALLIGNMQTYFQ 394 (731)
Q Consensus 340 ~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~ilfa~lIg~~~~~l~ 394 (731)
....++|+++.++...| ++..|.....+++.++++++++++.+.-.+++.+++.
T Consensus 563 ~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt 616 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT 616 (823)
T ss_dssp HHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45678999999998777 5778999999999999999999999999999999986
No 90
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=42.42 E-value=57 Score=33.16 Aligned_cols=59 Identities=10% Similarity=0.261 Sum_probs=40.2
Q ss_pred CCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeeechhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCH
Q 035714 503 GDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEA 578 (731)
Q Consensus 503 Gd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~ 578 (731)
-+..+++|++.+|.+.+-..++|+.. -..+++|++|=- |.. -..+=++-.+|..++|.+
T Consensus 48 ~~~~dE~FyqlkG~m~l~~~d~g~~~---~V~i~eGemfll--------P~g------v~HsP~r~~et~gLviE~ 106 (286)
T 2qnk_A 48 IEEGEEVFYQLEGDMVLRVLEQGKHR---DVVIRQGEIFLL--------PAR------VPHSPQRFANTVGLVVER 106 (286)
T ss_dssp ECSSCEEEEEEESCEEEEEEETTEEE---EEEECTTEEEEE--------CTT------CCEEEEECTTCEEEEEEE
T ss_pred CCCCCeEEEEEeCeEEEEEEeCCcee---eEEECCCeEEEe--------CCC------CCcCCcccCCeEEEEEee
Confidence 34578999999999999888866433 348999998832 221 123344566777777763
No 91
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=42.02 E-value=22 Score=33.53 Aligned_cols=37 Identities=19% Similarity=0.343 Sum_probs=27.1
Q ss_pred CcCeEEEEEeeEEEEEEecCCc--ceEEEEEeeCCCCeee
Q 035714 505 PVNEMLFIIRGTLESSTTNGGR--DGFFNSITLQPGDFCG 542 (731)
Q Consensus 505 ~~~~myfI~~G~v~v~~~~~g~--~~~~~~~~l~~Gd~fG 542 (731)
+.++++++++|.+.+...++|. .... -..+++||+|=
T Consensus 53 ~~eE~Fy~lkG~m~l~v~d~g~~~~~~~-dv~i~eGdmfl 91 (176)
T 1zvf_A 53 PTPEWFYQKKGSMLLKVVDETDAEPKFI-DIIINEGDSYL 91 (176)
T ss_dssp SSCEEEEEEESCEEEEEEECSSSSCEEE-EEEECTTEEEE
T ss_pred CCceEEEEEeCEEEEEEEcCCCccccee-eEEECCCCEEE
Confidence 4569999999999998887551 0111 34899999984
No 92
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=40.01 E-value=45 Score=27.69 Aligned_cols=48 Identities=19% Similarity=0.284 Sum_probs=33.7
Q ss_pred cEEEEecCCCEEEcC--CCC-cCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeee
Q 035714 488 LVSSLSIKGTYIVRE--GDP-VNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCG 542 (731)
Q Consensus 488 l~~~~~~~ge~I~~e--Gd~-~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 542 (731)
+....+.||..+-.. -.. ..++++|++|.+++... ++ ...+.+||.+=
T Consensus 23 ~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~~--~~-----~~~l~~Gd~~~ 73 (113)
T 2gu9_A 23 AAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIVD--GH-----TQALQAGSLIA 73 (113)
T ss_dssp EEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEET--TE-----EEEECTTEEEE
T ss_pred EEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEEC--CE-----EEEeCCCCEEE
Confidence 345577888876544 334 67999999999987652 33 23789998763
No 93
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=39.13 E-value=50 Score=26.79 Aligned_cols=47 Identities=11% Similarity=0.067 Sum_probs=32.0
Q ss_pred EEEEecCCCEEEcCCCC-cCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeee
Q 035714 489 VSSLSIKGTYIVREGDP-VNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCG 542 (731)
Q Consensus 489 ~~~~~~~ge~I~~eGd~-~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 542 (731)
....+.||..+-..-.. .+++++|++|.+.+... ++ ...+.+||.+=
T Consensus 31 ~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~--~~-----~~~l~~Gd~~~ 78 (105)
T 1v70_A 31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVG--EE-----EALLAPGMAAF 78 (105)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEEESCEEEEET--TE-----EEEECTTCEEE
T ss_pred EEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEEC--CE-----EEEeCCCCEEE
Confidence 34567788876433334 35799999999987652 33 33789999863
No 94
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=38.94 E-value=46 Score=28.59 Aligned_cols=48 Identities=23% Similarity=0.231 Sum_probs=34.8
Q ss_pred cEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeee
Q 035714 488 LVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCG 542 (731)
Q Consensus 488 l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 542 (731)
+....+.||..+-.--....++++|++|.+++.. +|+ ...+.+||.+=
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~ 90 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTI--GEE-----TRVLRPGMAYT 90 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEE--TTE-----EEEECTTEEEE
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEE--CCE-----EEEeCCCCEEE
Confidence 4456788888765544556899999999998866 233 23789998863
No 95
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=38.21 E-value=82 Score=28.92 Aligned_cols=31 Identities=26% Similarity=0.499 Sum_probs=24.3
Q ss_pred CcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeee
Q 035714 505 PVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCG 542 (731)
Q Consensus 505 ~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 542 (731)
..+++++|++|.+++.. +|+ ...+++||.+=
T Consensus 83 ~~eE~~yVLeG~~~l~i--~g~-----~~~l~~GD~i~ 113 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII--DGR-----KVSASSGELIF 113 (151)
T ss_dssp SSEEEEEEEEEEEEEEE--TTE-----EEEEETTCEEE
T ss_pred CCcEEEEEEEeEEEEEE--CCE-----EEEEcCCCEEE
Confidence 46799999999999875 454 34789999873
No 96
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=38.07 E-value=38 Score=31.79 Aligned_cols=52 Identities=13% Similarity=0.184 Sum_probs=36.4
Q ss_pred cEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeee
Q 035714 488 LVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCG 542 (731)
Q Consensus 488 l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 542 (731)
+....+.||......-..++++++|++|.+++...+.+... ...+++||.+-
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~---~~~l~~GDv~~ 94 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD---TYKLDQGDAIK 94 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEE---EEEEETTEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcE---EEEECCCCEEE
Confidence 45667888887654433457999999999988765433222 33789999874
No 97
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=37.83 E-value=83 Score=26.51 Aligned_cols=47 Identities=19% Similarity=0.261 Sum_probs=33.8
Q ss_pred cEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeee
Q 035714 488 LVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCG 542 (731)
Q Consensus 488 l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 542 (731)
+....+.||+.-.. ....++++|++|.+.+... +|+ ...+++||.+-
T Consensus 33 ~~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i~-~g~-----~~~l~~GD~i~ 79 (101)
T 1o5u_A 33 WPIWEKEVSEFDWY--YDTNETCYILEGKVEVTTE-DGK-----KYVIEKGDLVT 79 (101)
T ss_dssp SCEEEECSEEEEEE--CSSCEEEEEEEEEEEEEET-TCC-----EEEEETTCEEE
T ss_pred EEEEEeCCCccccc--CCceEEEEEEeCEEEEEEC-CCC-----EEEECCCCEEE
Confidence 44567778876554 4578999999999998763 243 34789999874
No 98
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=36.42 E-value=54 Score=28.16 Aligned_cols=49 Identities=22% Similarity=0.257 Sum_probs=33.1
Q ss_pred cEEEEecCCCEEEcCCCCc-CeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeee
Q 035714 488 LVSSLSIKGTYIVREGDPV-NEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCG 542 (731)
Q Consensus 488 l~~~~~~~ge~I~~eGd~~-~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 542 (731)
+....+.||..+-..-... .++++|++|.+++... +|+ ...+++||.+-
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~-~~~-----~~~l~~Gd~~~ 90 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQG-NGI-----VTHLKAGDIAI 90 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECS-TTC-----EEEEETTEEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEEC-CCe-----EEEeCCCCEEE
Confidence 4456778888765444453 6899999999987542 333 33789999763
No 99
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=35.89 E-value=61 Score=29.40 Aligned_cols=63 Identities=6% Similarity=0.026 Sum_probs=39.6
Q ss_pred cCCCCcCeEEEEEeeEEEEEEecCC--cceEEEEEeeCCCCeeechhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeCH
Q 035714 501 REGDPVNEMLFIIRGTLESSTTNGG--RDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALEA 578 (731)
Q Consensus 501 ~eGd~~~~myfI~~G~v~v~~~~~g--~~~~~~~~~l~~Gd~fGe~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~~ 578 (731)
+.-+..|++|+|++|.+.+...+++ .... ....+++|+++--. +. --.+-.|.++|.++.+..
T Consensus 45 h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d-~~V~l~~Ge~yvVP--------kG------veH~p~a~~e~~vLLiEp 109 (140)
T 3d0j_A 45 EIHHSTDEQFILSAGKAILITAEKENDKFNI-ELTLMEKGKVYNVP--------AE------CWFYSITQKDTKMMYVQD 109 (140)
T ss_dssp EEESSCCEEEEEEESCEEEEEEEEETTEEEE-EEEECCTTCCEEEC--------TT------CEEEEEECTTCEEEEEEE
T ss_pred ccCCCCCeEEEEEecEEEEEEecCcCCCCcc-ceEEecCCCEEEeC--------CC------ccCcccCCCceEEEEEEe
Confidence 3345678999999999998877421 1111 13588999987432 21 234455667777776643
No 100
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=33.68 E-value=51 Score=31.02 Aligned_cols=50 Identities=16% Similarity=0.126 Sum_probs=33.2
Q ss_pred EEEecCCCEEEc---CCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeee
Q 035714 490 SSLSIKGTYIVR---EGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCG 542 (731)
Q Consensus 490 ~~~~~~ge~I~~---eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 542 (731)
...+.||...-. --.++.++++|++|.+++...++|... ...+.+||.+-
T Consensus 121 ~~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~~---~~~l~~GD~~~ 173 (198)
T 2bnm_A 121 VVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPK---EALLPTGASMF 173 (198)
T ss_dssp EEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCE---EEEECTTCEEE
T ss_pred EEEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCcc---cEEECCCCEEE
Confidence 346677775431 233457999999999998874432222 34899999874
No 101
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=31.67 E-value=1.2e+02 Score=29.39 Aligned_cols=68 Identities=13% Similarity=0.195 Sum_probs=47.5
Q ss_pred cEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeeechhHhhhcCCCCCCCCCCcccEEEE
Q 035714 488 LVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRA 567 (731)
Q Consensus 488 l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~ll~al~~~~~~~~p~s~~tv~A 567 (731)
+....+.||+.+-..-.+.+++++|++|.+++.. +|+ ...+.+||.+=-.+ . ....+.+
T Consensus 155 ~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i--~g~-----~~~l~~Gd~i~ip~-------~-------~~H~~~~ 213 (227)
T 3rns_A 155 MTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYV--DGK-----PFIVKKGESAVLPA-------N-------IPHAVEA 213 (227)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEE--TTE-----EEEEETTEEEEECT-------T-------SCEEEEC
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeEEEEEEE--CCE-----EEEECCCCEEEECC-------C-------CcEEEEe
Confidence 4567889999876655667899999999998865 233 23789999864331 1 3456777
Q ss_pred -cceeEEEEe
Q 035714 568 -VTEVEAFAL 576 (731)
Q Consensus 568 -lt~~ell~L 576 (731)
.++++++.+
T Consensus 214 ~~~~~~~ll~ 223 (227)
T 3rns_A 214 ETENFKMLLI 223 (227)
T ss_dssp CSSCEEEEEE
T ss_pred CCCCEEEEEE
Confidence 777776643
No 102
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=30.57 E-value=41 Score=29.66 Aligned_cols=47 Identities=19% Similarity=0.164 Sum_probs=32.1
Q ss_pred EEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeeech
Q 035714 491 SLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCGEE 544 (731)
Q Consensus 491 ~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~ 544 (731)
-...||..-.+..+ .+++++|++|.+.+... +|+ ...+++||.+--.
T Consensus 54 w~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~~-~g~-----~~~l~~GD~~~ip 100 (123)
T 3bcw_A 54 WESTSGSFQSNTTG-YIEYCHIIEGEARLVDP-DGT-----VHAVKAGDAFIMP 100 (123)
T ss_dssp EEEEEEEEECCCTT-EEEEEEEEEEEEEEECT-TCC-----EEEEETTCEEEEC
T ss_pred EEECCCceeeEcCC-CcEEEEEEEEEEEEEEC-CCe-----EEEECCCCEEEEC
Confidence 45566766554332 38999999999998753 344 2378999987543
No 103
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=29.20 E-value=68 Score=29.66 Aligned_cols=47 Identities=21% Similarity=0.198 Sum_probs=32.4
Q ss_pred EEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeee
Q 035714 489 VSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCG 542 (731)
Q Consensus 489 ~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 542 (731)
....+.||..+-..-....++++|++|.+.+... |+ ...+.+||++=
T Consensus 59 ~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~i~ 105 (167)
T 3ibm_A 59 RYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVLD--DR-----VEPLTPLDCVY 105 (167)
T ss_dssp EEEEECTTCBCCCBBCSSCEEEEEEESEEEEEET--TE-----EEEECTTCEEE
T ss_pred EEEEECCCCCCCCccCCCcEEEEEEeCEEEEEEC--CE-----EEEECCCCEEE
Confidence 3456677766543334578999999999987652 33 33789999864
No 104
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=28.09 E-value=80 Score=30.87 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=24.7
Q ss_pred CCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeee
Q 035714 504 DPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCG 542 (731)
Q Consensus 504 d~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 542 (731)
.+.+++|+|++|.++....+ |+ ...+++||.+=
T Consensus 150 Hp~EEiy~VLsG~~e~~v~~-g~-----~~~l~pGd~v~ 182 (217)
T 4b29_A 150 HLPEELYSVVSGRALFHLRN-AP-----DLMLEPGQTRF 182 (217)
T ss_dssp CSSEEEEEEEEECEEEEETT-SC-----CEEECTTCEEE
T ss_pred CCCceEEEEEeCCEEEEECC-CC-----EEecCCCCEEE
Confidence 45789999999999876643 33 34789998764
No 105
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=27.89 E-value=1.1e+02 Score=29.08 Aligned_cols=65 Identities=14% Similarity=0.095 Sum_probs=46.4
Q ss_pred hcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeeechhHhhhcCCCCCCCCCCcccEEE
Q 035714 487 RLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVR 566 (731)
Q Consensus 487 ~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~ll~al~~~~~~~~p~s~~tv~ 566 (731)
.+....+.||..+-.-...+.++.+|++|..+ +++ ..+.+||++=.. ++ +..+..
T Consensus 126 ~v~l~~~~pG~~~p~H~H~g~E~~~VL~G~f~----de~-------~~~~~Gd~~~~p-------~g-------~~H~p~ 180 (195)
T 2q1z_B 126 IARLLWIPGGQAVPDHGHRGLELTLVLQGAFR----DET-------DRFGAGDIEIAD-------QE-------LEHTPV 180 (195)
T ss_dssp EEEEEEECTTCBCCCCCCSSCEEEEEEESEEE----CSS-------SEEETTCEEEEC-------SS-------CCCCCE
T ss_pred EEEEEEECCCCCCCCcCCCCeEEEEEEEEEEE----CCc-------EEECCCeEEEeC-------cC-------CccCCE
Confidence 45678899999998888899999999999965 221 267899986433 11 334455
Q ss_pred E--cceeEEEEe
Q 035714 567 A--VTEVEAFAL 576 (731)
Q Consensus 567 A--lt~~ell~L 576 (731)
+ .+.|.++..
T Consensus 181 a~~~~gc~~l~~ 192 (195)
T 2q1z_B 181 AERGLDCICLAA 192 (195)
T ss_dssp ECSSSCEEEEEE
T ss_pred eCCCCCEEEEEE
Confidence 5 667887764
No 106
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=27.36 E-value=59 Score=28.53 Aligned_cols=47 Identities=15% Similarity=0.297 Sum_probs=32.6
Q ss_pred EEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeeech
Q 035714 491 SLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCGEE 544 (731)
Q Consensus 491 ~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~ 544 (731)
-...||..-+.. +..+++++|++|.+.+... +|. ...+++||.+--.
T Consensus 47 We~tPG~~~~~~-~~~~E~~~iLeG~~~lt~d-dG~-----~~~l~aGD~~~~P 93 (116)
T 3es4_A 47 WMAEPGIYNYAG-RDLEETFVVVEGEALYSQA-DAD-----PVKIGPGSIVSIA 93 (116)
T ss_dssp EEECSEEEEECC-CSEEEEEEEEECCEEEEET-TCC-----CEEECTTEEEEEC
T ss_pred EecCCceeECee-CCCcEEEEEEEeEEEEEeC-CCe-----EEEECCCCEEEEC
Confidence 356677665554 3345999999999998654 454 2378999987543
No 107
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=26.93 E-value=1.2e+02 Score=28.70 Aligned_cols=53 Identities=13% Similarity=0.096 Sum_probs=35.2
Q ss_pred cEEEEecCCCEEEcCCCC-cCeEEEEEeeEEEEEEecCC---cceEEEEEeeCCCCeee
Q 035714 488 LVSSLSIKGTYIVREGDP-VNEMLFIIRGTLESSTTNGG---RDGFFNSITLQPGDFCG 542 (731)
Q Consensus 488 l~~~~~~~ge~I~~eGd~-~~~myfI~~G~v~v~~~~~g---~~~~~~~~~l~~Gd~fG 542 (731)
+....+.||...-.--.+ .+++++|++|.+++...+++ .+.. ...+.+||.+-
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~--~~~l~~GD~~~ 130 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLY--SRVVRAGETFV 130 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEE--EEEEETTCEEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEE--EEEECCCCEEE
Confidence 445678888865433333 57999999999998765432 2221 23789999874
No 108
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=26.04 E-value=1.4e+02 Score=24.11 Aligned_cols=50 Identities=24% Similarity=0.373 Sum_probs=33.4
Q ss_pred CeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeeechhHhhhcCCCCCCCCCCcccEEEEcceeEEEEeC
Q 035714 507 NEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVEAFALE 577 (731)
Q Consensus 507 ~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~ll~al~~~~~~~~p~s~~tv~Alt~~ell~L~ 577 (731)
.++++|++|.+.+... ++ ...+.+||.+--. +. ....+.+.+++.++.++
T Consensus 51 ~e~~~v~~G~~~~~~~--~~-----~~~l~~Gd~~~ip-------~~-------~~H~~~~~~~~~~l~i~ 100 (102)
T 3d82_A 51 DEVFIVMEGTLQIAFR--DQ-----NITLQAGEMYVIP-------KG-------VEHKPMAKEECKIMIIE 100 (102)
T ss_dssp CEEEEEEESEEEEECS--SC-----EEEEETTEEEEEC-------TT-------CCBEEEEEEEEEEEEEE
T ss_pred cEEEEEEeCEEEEEEC--CE-----EEEEcCCCEEEEC-------CC-------CeEeeEcCCCCEEEEEE
Confidence 7999999999987653 22 2377899876322 22 23455566788887764
No 109
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=24.37 E-value=66 Score=29.47 Aligned_cols=45 Identities=20% Similarity=0.189 Sum_probs=30.2
Q ss_pred EEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCee
Q 035714 490 SSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFC 541 (731)
Q Consensus 490 ~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~f 541 (731)
...+.||..+-..-....++++|++|.+++.. +|+ ...+.+||++
T Consensus 48 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v--~g~-----~~~l~~Gd~i 92 (156)
T 3kgz_A 48 YFEVDEGGYSTLERHAHVHAVMIHRGHGQCLV--GET-----ISDVAQGDLV 92 (156)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEEEEEEEE--TTE-----EEEEETTCEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEE
Confidence 34556666543333456789999999999875 333 3377899876
No 110
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=23.79 E-value=81 Score=27.26 Aligned_cols=46 Identities=20% Similarity=0.249 Sum_probs=30.4
Q ss_pred EEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeee
Q 035714 490 SSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCG 542 (731)
Q Consensus 490 ~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 542 (731)
...+.||..+-.--....++++|++|.+++... ++ ...+.+||.+=
T Consensus 52 ~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~i~ 97 (126)
T 1vj2_A 52 LFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKE--QG-----EETVEEGFYIF 97 (126)
T ss_dssp EEEEEEEEEEEEECCSSCEEEEEEESEEEEECS--SC-----EEEEETTEEEE
T ss_pred EEEECCCCcCCceeCCCcEEEEEEEeEEEEEEC--CE-----EEEECCCCEEE
Confidence 345566665433334477999999999987653 33 23778888763
No 111
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=23.77 E-value=65 Score=29.88 Aligned_cols=46 Identities=15% Similarity=0.087 Sum_probs=31.0
Q ss_pred EEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeee
Q 035714 490 SSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCG 542 (731)
Q Consensus 490 ~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 542 (731)
...+.||..+-..-....++++|++|.+++.. +|+ ...+.+||++=
T Consensus 57 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v--~g~-----~~~l~~GD~i~ 102 (166)
T 3jzv_A 57 YFEVGPGGHSTLERHQHAHGVMILKGRGHAMV--GRA-----VSAVAPYDLVT 102 (166)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEECEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 34566776554333456789999999998765 333 33789998763
No 112
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=23.58 E-value=56 Score=26.84 Aligned_cols=50 Identities=14% Similarity=0.024 Sum_probs=31.7
Q ss_pred EEEEecCCCEEEcCCCCcC-eEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeeec
Q 035714 489 VSSLSIKGTYIVREGDPVN-EMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCGE 543 (731)
Q Consensus 489 ~~~~~~~ge~I~~eGd~~~-~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 543 (731)
....+.||...-..-.... ++++|++|.+++... +|.+ ...+.+||.+=.
T Consensus 21 ~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~-~g~~----~~~l~~Gd~~~~ 71 (97)
T 2fqp_A 21 TEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETP-EGSV----TSQLTRGVSYTR 71 (97)
T ss_dssp EEEEECTTCBCCSEECCSCEEEEESSCEEEEEEET-TEEE----EEEECTTCCEEE
T ss_pred EEEEECCCCCCCCEECCCCcEEEEEeecEEEEEeC-CCCE----EEEEcCCCEEEe
Confidence 3456778875422223343 599999999997653 2211 337899998743
No 113
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=23.22 E-value=98 Score=26.49 Aligned_cols=80 Identities=13% Similarity=0.113 Sum_probs=46.7
Q ss_pred EEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeeechhHhhhcCCCCCCCCCCcccEEEEc
Q 035714 489 VSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRAV 568 (731)
Q Consensus 489 ~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~ll~al~~~~~~~~p~s~~tv~Al 568 (731)
....+.||...-..-....++++|.+|.+.+.. +|+ ...+.+||.+=-. ++ ....+.+.
T Consensus 37 ~~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i--~~~-----~~~l~~Gd~~~i~-------~~-------~~H~~~~~ 95 (128)
T 4i4a_A 37 AWCIVRPETKSFRHSHNEYELFIVIQGNAIIRI--NDE-----DFPVTKGDLIIIP-------LD-------SEHHVINN 95 (128)
T ss_dssp EEEEECTTEECCCBCCSSEEEEEEEESEEEEEE--TTE-----EEEEETTCEEEEC-------TT-------CCEEEEEC
T ss_pred EEEEECCCCccCCEecCCeEEEEEEeCEEEEEE--CCE-----EEEECCCcEEEEC-------CC-------CcEEeEeC
Confidence 345566776443333456799999999998876 233 3378999886432 11 12334443
Q ss_pred --ceeE--EEEeCHHHHHHHHHHhH
Q 035714 569 --TEVE--AFALEAEDLKFVAHQFK 589 (731)
Q Consensus 569 --t~~e--ll~L~~~df~~l~~~~p 589 (731)
++++ ++.++.+-+..+..+-+
T Consensus 96 ~~~~~~~~~i~f~~~~~~~~~~~~~ 120 (128)
T 4i4a_A 96 NQEDFHFYTIWWDKESTLNFLTRLE 120 (128)
T ss_dssp SSSCEEEEEEEECHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEECHHHHHHHHHhcc
Confidence 3333 45667776666655543
No 114
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=23.11 E-value=75 Score=26.87 Aligned_cols=47 Identities=13% Similarity=0.194 Sum_probs=29.3
Q ss_pred EEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeee
Q 035714 490 SSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCG 542 (731)
Q Consensus 490 ~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 542 (731)
...+.||..+-.--....++++|++|.+.+... ++.. ..+.+||.+=
T Consensus 31 ~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~--~~~~----~~l~~Gd~i~ 77 (117)
T 2b8m_A 31 HIVLPRGEQMPKHYSNSYVHLIIIKGEMTLTLE--DQEP----HNYKEGNIVY 77 (117)
T ss_dssp EEEEETTCBCCCEECSSCEEEEEEESEEEEEET--TSCC----EEEETTCEEE
T ss_pred EEEECCCCcCCCEeCCCcEEEEEEeCEEEEEEC--CEEE----EEeCCCCEEE
Confidence 345566665422223466899999999987652 3321 1678998763
No 115
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=22.64 E-value=1.2e+02 Score=27.10 Aligned_cols=48 Identities=19% Similarity=0.253 Sum_probs=31.9
Q ss_pred EEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeee
Q 035714 489 VSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCG 542 (731)
Q Consensus 489 ~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 542 (731)
....+.||..+-.--....++++|++|.+.+... +++ ...+.+||.+-
T Consensus 51 ~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~--~~~----~~~l~~Gd~i~ 98 (147)
T 2f4p_A 51 YDVVFEPGARTHWHSHPGGQILIVTRGKGFYQER--GKP----ARILKKGDVVE 98 (147)
T ss_dssp EEEEECTTCEECSEECTTCEEEEEEEEEEEEEET--TSC----CEEEETTCEEE
T ss_pred EEEEECCCCccCceECCCceEEEEEeCEEEEEEC--CEE----EEEECCCCEEE
Confidence 3456777776533333457999999999987653 331 13678998874
No 116
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=22.56 E-value=1.3e+02 Score=28.05 Aligned_cols=46 Identities=13% Similarity=0.114 Sum_probs=31.5
Q ss_pred EEEecCCCEEEc--CCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeee
Q 035714 490 SSLSIKGTYIVR--EGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCG 542 (731)
Q Consensus 490 ~~~~~~ge~I~~--eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 542 (731)
...+.||...-. -.....++++|++|.+++.. +|+ ...+.+||.+=
T Consensus 108 ~~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~--~~~-----~~~l~~GD~i~ 155 (192)
T 1y9q_A 108 EITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF--DEQ-----WHELQQGEHIR 155 (192)
T ss_dssp EEEECTTCEEEECCCSTTCEEEEEEEESCEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE--CCE-----EEEeCCCCEEE
Confidence 356778776542 22335799999999998765 333 34789999863
No 117
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=22.46 E-value=1.4e+02 Score=31.02 Aligned_cols=51 Identities=14% Similarity=0.133 Sum_probs=35.0
Q ss_pred EEEEecCCCEEEcCCCC-cCeEEEEEeeEEEEEEec-CCcceEEEEEeeCCCCeee
Q 035714 489 VSSLSIKGTYIVREGDP-VNEMLFIIRGTLESSTTN-GGRDGFFNSITLQPGDFCG 542 (731)
Q Consensus 489 ~~~~~~~ge~I~~eGd~-~~~myfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 542 (731)
....+.||...--.-.. .+++++|++|.+++...+ +|+... ..+++||.+=
T Consensus 55 ~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~~---~~l~~GD~~~ 107 (361)
T 2vqa_A 55 VYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVEI---ADVDKGGLWY 107 (361)
T ss_dssp EEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEEE---EEEETTEEEE
T ss_pred EEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEEE---EEEcCCCEEE
Confidence 35567788865433334 789999999999988765 333222 3789999763
No 118
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=22.39 E-value=94 Score=27.19 Aligned_cols=46 Identities=17% Similarity=0.314 Sum_probs=31.3
Q ss_pred EEEEecCCCEEEcCCCC-cCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCee
Q 035714 489 VSSLSIKGTYIVREGDP-VNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFC 541 (731)
Q Consensus 489 ~~~~~~~ge~I~~eGd~-~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~f 541 (731)
....+.||..+-.--.. ..++++|++|.+.+... ++ ...+.+||.+
T Consensus 60 ~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~i 106 (133)
T 1o4t_A 60 ARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDN--GK-----DVPIKAGDVC 106 (133)
T ss_dssp EEEEECTTCEEEEEECCSEEEEEEEEESEEEEEET--TE-----EEEEETTEEE
T ss_pred EEEEECCCCccCceECCCccEEEEEEeCEEEEEEC--CE-----EEEeCCCcEE
Confidence 34577888765432233 46899999999987652 33 3378899876
No 119
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=22.23 E-value=77 Score=26.32 Aligned_cols=68 Identities=18% Similarity=0.319 Sum_probs=39.3
Q ss_pred ecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeeechhHhhhcCCCCCCCCCCcccEEEEcceeE
Q 035714 493 SIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRAVTEVE 572 (731)
Q Consensus 493 ~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~ll~al~~~~~~~~p~s~~tv~Alt~~e 572 (731)
..+|+.....-+...++++|++|.+++...+ ++ ...+.+||.+=-. ++ ....+.+.+++.
T Consensus 35 ~~~g~~~~H~H~~~~E~~~Vl~G~~~~~~~~-~~-----~~~l~~Gd~~~ip-------~~-------~~H~~~~~~~~~ 94 (107)
T 2i45_A 35 KLLGDYGWHTHGYSDKVLFAVEGDMAVDFAD-GG-----SMTIREGEMAVVP-------KS-------VSHRPRSENGCS 94 (107)
T ss_dssp EEEEECCCBCC--CCEEEEESSSCEEEEETT-SC-----EEEECTTEEEEEC-------TT-------CCEEEEEEEEEE
T ss_pred ECCCCCcceeCCCCCEEEEEEeCEEEEEECC-Cc-----EEEECCCCEEEEC-------CC-------CcEeeEeCCCeE
Confidence 3455543233322389999999999876633 23 3378999987332 12 123344456777
Q ss_pred EEEeCHHH
Q 035714 573 AFALEAED 580 (731)
Q Consensus 573 ll~L~~~d 580 (731)
++.+....
T Consensus 95 ~l~i~~~~ 102 (107)
T 2i45_A 95 LVLIELSD 102 (107)
T ss_dssp EEEEECC-
T ss_pred EEEEECCC
Confidence 77765443
No 120
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=22.18 E-value=90 Score=29.29 Aligned_cols=48 Identities=13% Similarity=0.156 Sum_probs=33.0
Q ss_pred cEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCee
Q 035714 488 LVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFC 541 (731)
Q Consensus 488 l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~f 541 (731)
+....+.||...-.--....+..+|++|.+++...+ |+ ...+++||.+
T Consensus 81 ~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld~-ge-----~~~L~~GDsi 128 (172)
T 3es1_A 81 IRVVDMLPGKESPMHRTNSIDYGIVLEGEIELELDD-GA-----KRTVRQGGII 128 (172)
T ss_dssp EEEEEECTTCBCCCBCCSEEEEEEEEESCEEEECGG-GC-----EEEECTTCEE
T ss_pred EEEEEECCCCCCCCeecCceEEEEEEeCEEEEEECC-Ce-----EEEECCCCEE
Confidence 455678888754333334567889999999986532 33 2378999998
No 121
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=21.62 E-value=86 Score=26.66 Aligned_cols=35 Identities=17% Similarity=0.433 Sum_probs=24.7
Q ss_pred CCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeeec
Q 035714 504 DPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCGE 543 (731)
Q Consensus 504 d~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 543 (731)
...+++++|++|.+++...+ ++. ...+++||.+--
T Consensus 51 ~~~~E~~~Vl~G~~~l~~~~--~~~---~~~l~~Gd~i~i 85 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIECEG--DTA---PRVMRPGDWLHV 85 (112)
T ss_dssp CSSEEEEEEEESCEEEEETT--CSS---CEEECTTEEEEE
T ss_pred CCccEEEEEEeCeEEEEECC--EEE---EEEECCCCEEEE
Confidence 45679999999999887633 220 027899998743
No 122
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=21.62 E-value=85 Score=33.85 Aligned_cols=53 Identities=25% Similarity=0.333 Sum_probs=38.3
Q ss_pred hcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeee
Q 035714 487 RLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCG 542 (731)
Q Consensus 487 ~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 542 (731)
.+....+.||..+..--...+++++|++|...+...+.+... ...+++||++-
T Consensus 50 s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~---~~~l~~GDv~~ 102 (416)
T 1uij_A 50 RIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRD---SYNLHPGDAQR 102 (416)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEE---EEEECTTEEEE
T ss_pred EEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCCCe---EEEecCCCEEE
Confidence 356788899997666544577999999999988765443322 33789999873
No 123
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=21.52 E-value=1.4e+02 Score=31.37 Aligned_cols=51 Identities=18% Similarity=0.159 Sum_probs=35.7
Q ss_pred cEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecC-CcceEEEEEeeCCCCee
Q 035714 488 LVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNG-GRDGFFNSITLQPGDFC 541 (731)
Q Consensus 488 l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~-g~~~~~~~~~l~~Gd~f 541 (731)
+....+.||..+-.--....++++|++|.+++...+. |+... ..+.+||++
T Consensus 81 ~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~~---~~l~~GD~~ 132 (385)
T 1j58_A 81 SVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFI---DDVGEGDLW 132 (385)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEE---EEEETTEEE
T ss_pred EEEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEEE---EEeCCCCEE
Confidence 3456778888654333347899999999999887663 44322 278999976
No 124
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=21.11 E-value=1.7e+02 Score=26.19 Aligned_cols=52 Identities=13% Similarity=0.097 Sum_probs=35.9
Q ss_pred cEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeeech
Q 035714 488 LVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCGEE 544 (731)
Q Consensus 488 l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~ 544 (731)
+....++||..+-.-..+..+.++|++|..+. ..|.... -..+++||++=..
T Consensus 46 ~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~---~~g~~~~--~~~~~~Gd~~~~p 97 (145)
T 2o1q_A 46 TAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDV---RGGKAAG--GDTAIAPGYGYES 97 (145)
T ss_dssp EEEEEECTTEEECCEEESSCEEEEEEEEEEEE---TTCGGGT--SEEEESSEEEEEC
T ss_pred EEEEEECCCCCCCccCCCCCEEEEEEEeEEEE---cCCCEec--ceEeCCCEEEEEC
Confidence 55678899998877777788889999999973 2232210 0256888886543
No 125
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=20.89 E-value=78 Score=29.05 Aligned_cols=48 Identities=15% Similarity=0.095 Sum_probs=31.7
Q ss_pred EEEEecCCCEEE--cCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeeec
Q 035714 489 VSSLSIKGTYIV--REGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCGE 543 (731)
Q Consensus 489 ~~~~~~~ge~I~--~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 543 (731)
....+.||.... ..-...+++++|++|.+++... ++ ...+.+||.+--
T Consensus 46 ~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~--~~-----~~~l~~GD~i~i 95 (163)
T 3i7d_A 46 NLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDD--QG-----EHPMVPGDCAAF 95 (163)
T ss_dssp EEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEET--TE-----EEEECTTCEEEE
T ss_pred EEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEEC--CE-----EEEeCCCCEEEE
Confidence 456777887542 2222236999999999988763 32 237899988643
No 126
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=20.45 E-value=3.7e+02 Score=26.16 Aligned_cols=65 Identities=15% Similarity=0.252 Sum_probs=42.2
Q ss_pred EEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeeechhHhhhcCCCCCCCCCCcccEEEEc
Q 035714 489 VSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCGEELLTWALTPNSTLNLPSSTRTVRAV 568 (731)
Q Consensus 489 ~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~ll~al~~~~~~~~p~s~~tv~Al 568 (731)
....+.||...-..- .+++.+|++|.+++.. +|+ ...+.+||++--. +. ....+++.
T Consensus 53 ~~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~--~~~-----~~~l~~Gd~~~~p-------~~-------~~H~~~n~ 109 (246)
T 1sfn_A 53 FTAEMPAGAQATESV--YQRFAFVLSGEVDVAV--GGE-----TRTLREYDYVYLP-------AG-------EKHMLTAK 109 (246)
T ss_dssp EEEEECTTCEEECCS--SEEEEEEEEEEEEEEC--SSC-----EEEECTTEEEEEC-------TT-------CCCEEEEE
T ss_pred EEEEECCCCcCCCCc--eeEEEEEEECEEEEEE--CCE-----EEEECCCCEEEEC-------CC-------CCEEEEeC
Confidence 345778887655442 7889999999998875 333 3378999987433 11 22334444
Q ss_pred ceeEEEEe
Q 035714 569 TEVEAFAL 576 (731)
Q Consensus 569 t~~ell~L 576 (731)
++++++.+
T Consensus 110 ~~~~~l~v 117 (246)
T 1sfn_A 110 TDARVSVF 117 (246)
T ss_dssp EEEEEEEE
T ss_pred CCEEEEEE
Confidence 67777665
No 127
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=20.38 E-value=1.4e+02 Score=29.09 Aligned_cols=47 Identities=11% Similarity=0.104 Sum_probs=34.4
Q ss_pred cEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCee
Q 035714 488 LVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFC 541 (731)
Q Consensus 488 l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~f 541 (731)
+....+.||..+-.--.+..++++|++|.+++.. +|+ ...+.+||.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~--~~~-----~~~l~~Gd~i 82 (243)
T 3h7j_A 36 VLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTV--GDV-----TRKMTALESA 82 (243)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEESEEEEEE--TTE-----EEEEETTTCE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEEeEEEEEE--CCE-----EEEECCCCEE
Confidence 4455688888776555567899999999999876 343 3378999844
No 128
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=20.30 E-value=79 Score=28.66 Aligned_cols=46 Identities=15% Similarity=0.197 Sum_probs=31.0
Q ss_pred EEEEecCCCE-E-EcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCee
Q 035714 489 VSSLSIKGTY-I-VREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFC 541 (731)
Q Consensus 489 ~~~~~~~ge~-I-~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~f 541 (731)
....+.||.. . .+.-...+++++|++|.+.+... |+ ...+.+||++
T Consensus 49 ~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~~--~~-----~~~l~~Gd~i 96 (162)
T 3l2h_A 49 HLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTME--ND-----QYPIAPGDFV 96 (162)
T ss_dssp EEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEET--TE-----EEEECTTCEE
T ss_pred EEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEEC--CE-----EEEeCCCCEE
Confidence 3467788873 2 11122467999999999988752 33 3378999987
No 129
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=20.25 E-value=1.7e+02 Score=30.20 Aligned_cols=52 Identities=17% Similarity=0.181 Sum_probs=36.0
Q ss_pred cEEEEecCCCEEEcCCCCc-CeEEEEEeeEEEEEEec-CCcceEEEEEeeCCCCeee
Q 035714 488 LVSSLSIKGTYIVREGDPV-NEMLFIIRGTLESSTTN-GGRDGFFNSITLQPGDFCG 542 (731)
Q Consensus 488 l~~~~~~~ge~I~~eGd~~-~~myfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 542 (731)
+....+.||..+-..-.+. +++++|++|.+++...+ +|+.. ...+++||.+=
T Consensus 236 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~---~~~l~~GD~~~ 289 (361)
T 2vqa_A 236 GALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKAS---VSRLQQGDVGY 289 (361)
T ss_dssp EEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTCEE---EEEECTTCEEE
T ss_pred EEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCcEE---EEEECCCCEEE
Confidence 4566788888765433344 89999999999987644 34311 23789999874
No 130
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=20.09 E-value=99 Score=33.53 Aligned_cols=53 Identities=21% Similarity=0.218 Sum_probs=38.7
Q ss_pred hcEEEEecCCCEEEcCCCCcCeEEEEEeeEEEEEEecCCcceEEEEEeeCCCCeee
Q 035714 487 RLVSSLSIKGTYIVREGDPVNEMLFIIRGTLESSTTNGGRDGFFNSITLQPGDFCG 542 (731)
Q Consensus 487 ~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 542 (731)
.+....+.||..+..--...+++++|++|...+...+.+... ...+++||++-
T Consensus 62 s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~~---~~~l~~GDv~~ 114 (434)
T 2ea7_A 62 RVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSRD---SYILEQGHAQK 114 (434)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEE---EEEEETTEEEE
T ss_pred EEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCCCE---EEEeCCCCEEE
Confidence 456788999998776644577999999999988765443322 34788898864
Done!