BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035716
(308 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8R3J4|MTER1_MOUSE mTERF domain-containing protein 1, mitochondrial OS=Mus musculus
GN=Mterfd1 PE=2 SV=1
Length = 412
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 89/185 (48%), Gaps = 21/185 (11%)
Query: 11 SLCISSQTPSPTSSSSPSNSQ----------QLNIHLSTKPKSLLQNHPLYPPTQANLSF 60
++ I++ +P P SS + ++ QL + LS ++ HP L F
Sbjct: 125 AIQIAAYSPLPISSFTLADYVDHSKTLQKLVQLGVDLSK-----IEKHPDAANLLLRLDF 179
Query: 61 Q--IKEKILCLEIMGVDS---GKALSLNPSLHSASLNSIEGIISFLQSKGILQKDLPRIF 115
+ IK+ +L L+ +G++ G L+ N ++ S L +++ +++LQSK + D+ R+
Sbjct: 180 EKHIKQILLFLKDLGLEDNQLGPFLTKNYAIFSEDLENLKTRVAYLQSKNFSKTDIARMV 239
Query: 116 GMCPKVLTANIKTDLEPVFNFLSHDLEVPEHDFRKVINKCPRLLTSSARDQLKPALFYLQ 175
P +L+ +++ L+ F +LE+ R ++ + PRLLT S + Y
Sbjct: 240 KNAPFLLSFSVER-LDNRLGFFQKELELNVKKTRDLVVRLPRLLTGSLEPVKENMKVYHL 298
Query: 176 RLGFK 180
LGFK
Sbjct: 299 ELGFK 303
Score = 35.4 bits (80), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 166 QLKPALFYLQRLGFKD--LNALAYQDSVLLVSKVENTLIPKLKYLESIGFSKDEAVLMVL 223
+K L +L+ LG +D L ++ + +EN L ++ YL+S FSK + MV
Sbjct: 182 HIKQILLFLKDLGLEDNQLGPFLTKNYAIFSEDLEN-LKTRVAYLQSKNFSKTDIARMVK 240
Query: 224 RCPGLFTFSIE 234
P L +FS+E
Sbjct: 241 NAPFLLSFSVE 251
>sp|Q6P6Q6|MTER1_RAT mTERF domain-containing protein 1, mitochondrial OS=Rattus
norvegicus GN=Mterfd1 PE=2 SV=1
Length = 409
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 90/185 (48%), Gaps = 21/185 (11%)
Query: 11 SLCISSQTPSPTSSSSPSNSQ----------QLNIHLSTKPKSLLQNHPLYPPTQANLSF 60
++ I++ +P P SSS+ ++ QL + LS ++ HP L+F
Sbjct: 122 AIQIAAYSPLPLSSSTLADYVDHSETLQKLVQLGVDLSK-----IEKHPDVANLLLRLNF 176
Query: 61 Q--IKEKILCLEIMGVDS---GKALSLNPSLHSASLNSIEGIISFLQSKGILQKDLPRIF 115
+ IK+ +L L+ +G++ G L+ N ++ S L +++ +++LQSK + D+ +
Sbjct: 177 EKDIKQILLFLKDLGLEDNQLGPFLTKNYAIFSEDLENLKTRVAYLQSKNFSKTDIACMV 236
Query: 116 GMCPKVLTANIKTDLEPVFNFLSHDLEVPEHDFRKVINKCPRLLTSSARDQLKPALFYLQ 175
P +L+ +++ L+ F +LE+ R ++ + PRLLT S + Y
Sbjct: 237 KNAPFLLSFSVER-LDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRL 295
Query: 176 RLGFK 180
LGFK
Sbjct: 296 ELGFK 300
Score = 35.8 bits (81), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 167 LKPALFYLQRLGFKD--LNALAYQDSVLLVSKVENTLIPKLKYLESIGFSKDEAVLMVLR 224
+K L +L+ LG +D L ++ + +EN L ++ YL+S FSK + MV
Sbjct: 180 IKQILLFLKDLGLEDNQLGPFLTKNYAIFSEDLEN-LKTRVAYLQSKNFSKTDIACMVKN 238
Query: 225 CPGLFTFSIE 234
P L +FS+E
Sbjct: 239 APFLLSFSVE 248
>sp|Q96E29|MTER1_HUMAN mTERF domain-containing protein 1, mitochondrial OS=Homo sapiens
GN=MTERFD1 PE=1 SV=2
Length = 417
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 110/237 (46%), Gaps = 21/237 (8%)
Query: 43 SLLQNHPLYPPTQANLSFQ--IKEKILCLEIMGVDS---GKALSLNPSLHSASLNSIEGI 97
S ++ HP L F+ IK+ +L L+ +G++ G L+ N ++ S L +++
Sbjct: 167 SKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTR 226
Query: 98 ISFLQSKGILQKDLPRIFGMCPKVLTANIKTDLEPVFNFLSHDLEVPEHDFRKVINKCPR 157
+++L SK + D+ ++ P +L +++ L+ F +LE+ R ++ + PR
Sbjct: 227 VAYLHSKNFSKADVAQMVRKAPFLLNFSVER-LDNRLGFFQKELELSVKKTRDLVVRLPR 285
Query: 158 LLTSSARDQLKPALFYLQRLGFKDLNALAYQDSVLLVSKVENTLIP-KLKYLESIGFSKD 216
LLT S + Y LGFK N + + +++++ L K+K E+ F +
Sbjct: 286 LLTGSLEPVKENMKVYRLELGFKH-NEIQH-----MITRIPKMLTANKMKLTETFDFVHN 339
Query: 217 EAVL---MVLRCPGLFTFSIENNFKPKFEYFNLEIKGKLEELKEFPQYFAFSLEKRI 270
+ ++++ P +F + FK K + L G+ + P Y SL+K +
Sbjct: 340 VMSIPHHIIVKFPQVFNTRL---FKVKERHLFLTYLGRAQYDPAKPNY--ISLDKLV 391
>sp|Q4G078|MTER2_RAT mTERF domain-containing protein 2 OS=Rattus norvegicus GN=Mterfd2
PE=2 SV=1
Length = 347
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 57/134 (42%), Gaps = 5/134 (3%)
Query: 79 ALSLNPSLHSASLNSIEGIISFLQSKGILQKDLPRIFGMCPKVLTANIKTDLEPVFNFLS 138
AL NP L S ++ S+L+ G+ + L R+ +CPKV T + D++ + L
Sbjct: 144 ALKKNPQLLKLSATQMKRRSSYLRKLGLGEGKLKRVLSVCPKVFTMR-QQDIDNIVKVLK 202
Query: 139 HDLEVPEHDFRKVINKCPRLLTSSARDQLKPALFYLQRLGFKDLNALAYQDSVLLVSKVE 198
++++CP +L + + R+G L+ + ++KV+
Sbjct: 203 EKCLFTVQHITDILHRCPAVLQEDPSELEYKFQYAYFRMGLTHLDIVRTDFLQYSIAKVK 262
Query: 199 NTLIPKLKYLESIG 212
I YLE +G
Sbjct: 263 QRHI----YLERLG 272
>sp|Q8BVN4|MTER2_MOUSE mTERF domain-containing protein 2 OS=Mus musculus GN=Mterfd2 PE=1
SV=1
Length = 346
Score = 39.3 bits (90), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 58/134 (43%), Gaps = 5/134 (3%)
Query: 79 ALSLNPSLHSASLNSIEGIISFLQSKGILQKDLPRIFGMCPKVLTANIKTDLEPVFNFLS 138
AL NP L S ++ S+L+ G+ + L R+ +CP+V T + + D++ V L
Sbjct: 144 ALKKNPQLLKLSSMQMKRRSSYLRKLGLGEGKLKRVLSVCPEVFTMH-QRDIDRVVKVLR 202
Query: 139 HDLEVPEHDFRKVINKCPRLLTSSARDQLKPALFYLQRLGFKDLNALAYQDSVLLVSKVE 198
V+++CP +L + + R+G L+ + ++K++
Sbjct: 203 EKCLFTAQHITDVLHRCPTVLQEDPNELEYKFQYAYFRMGLTHLDIVRTNFLQYSITKIK 262
Query: 199 NTLIPKLKYLESIG 212
I YLE +G
Sbjct: 263 QRHI----YLERLG 272
>sp|Q5XIE2|MTER3_RAT mTERF domain-containing protein 3, mitochondrial OS=Rattus
norvegicus GN=Mterfd3 PE=2 SV=1
Length = 385
Score = 37.0 bits (84), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%)
Query: 78 KALSLNPSLHSASLNSIEGIISFLQSKGILQKDLPRIFGMCPKVLTANIKTDLEPVFNFL 137
K LS NP + +S ++ ++ FLQ +G ++ ++ L ++ +F
Sbjct: 211 KLLSQNPFIVLSSPTAVGEVLKFLQGQGFTDSEVLQLLSKLKGFLFQLQPGSIQNSISFT 270
Query: 138 SHDLEVPEHDFRKVINKCPRLL 159
E +HD R+++ KCP LL
Sbjct: 271 KTTFECTDHDLRQLVVKCPALL 292
>sp|Q49AM1|MTER3_HUMAN mTERF domain-containing protein 3, mitochondrial OS=Homo sapiens
GN=MTERFD3 PE=1 SV=2
Length = 385
Score = 35.4 bits (80), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Query: 72 MGVDSGKALSLNPSLHSASLNSIEGIISFLQSKG--------ILQKDLPRIFGMCPKVLT 123
M V K LS NP + S +I+ + FLQ +G +L K +F +CP+ +
Sbjct: 205 MKVWLLKLLSQNPFILLNSPTAIKETLEFLQEQGFTSFEILQLLSKLKGFLFQLCPRSIQ 264
Query: 124 ANIKTDLEPVFNFLSHDLEVPEHDFRKVINKCPRLLTSSA 163
+I +F + + +HD ++++ KCP LL S
Sbjct: 265 NSI--------SFSKNAFKCTDHDLKQLVLKCPALLYYSV 296
>sp|Q5R6G1|MTER3_PONAB mTERF domain-containing protein 3, mitochondrial OS=Pongo abelii
GN=MTERFD3 PE=2 SV=1
Length = 385
Score = 35.4 bits (80), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Query: 72 MGVDSGKALSLNPSLHSASLNSIEGIISFLQSKG--------ILQKDLPRIFGMCPKVLT 123
M V K LS NP + S +I+ + FLQ +G +L K +F +CP+ +
Sbjct: 205 MKVWLLKLLSQNPFILLNSPTAIKETLEFLQEQGFTSFEILQLLSKLKGFLFQLCPRSIQ 264
Query: 124 ANIKTDLEPVFNFLSHDLEVPEHDFRKVINKCPRLLTSSA 163
+I +F + + +HD ++++ KCP LL S
Sbjct: 265 NSI--------SFSKNAFKCTDHDLKQLVLKCPALLYYSV 296
>sp|Q88MA9|PUR5_PSEPK Phosphoribosylformylglycinamidine cyclo-ligase OS=Pseudomonas
putida (strain KT2440) GN=purM PE=3 SV=1
Length = 352
Score = 35.4 bits (80), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 103 SKGILQKDLPRIFGMCPKVLTA--NIKTDLEP-VFNFLSHDLEVPEHDFRKVINKCPRLL 159
+ G L ++PR+ PK A ++ + P VF+FL V EH+ +V+N ++
Sbjct: 250 TGGGLLDNIPRVL---PKNAQAVVDVASWQRPAVFDFLQEKGNVDEHEMHRVLNCGVGMV 306
Query: 160 TSSARDQLKPALFYLQRLG 178
A+DQ++ AL L+ G
Sbjct: 307 ICVAQDQVEAALNELRAAG 325
>sp|B0KT52|PUR5_PSEPG Phosphoribosylformylglycinamidine cyclo-ligase OS=Pseudomonas
putida (strain GB-1) GN=purM PE=3 SV=1
Length = 352
Score = 35.4 bits (80), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 103 SKGILQKDLPRIFGMCPKVLTA--NIKTDLEP-VFNFLSHDLEVPEHDFRKVINKCPRLL 159
+ G L ++PR+ PK A ++ + P VF+FL V EH+ +V+N ++
Sbjct: 250 TGGGLLDNIPRVL---PKNAQAVVDVASWQRPAVFDFLQEKGNVDEHEMHRVLNCGVGMV 306
Query: 160 TSSARDQLKPALFYLQRLG 178
A+DQ++ AL L+ G
Sbjct: 307 ICVAQDQVEAALNELRAAG 325
>sp|A5W7R7|PUR5_PSEP1 Phosphoribosylformylglycinamidine cyclo-ligase OS=Pseudomonas
putida (strain F1 / ATCC 700007) GN=purM PE=3 SV=1
Length = 352
Score = 35.4 bits (80), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 103 SKGILQKDLPRIFGMCPKVLTA--NIKTDLEP-VFNFLSHDLEVPEHDFRKVINKCPRLL 159
+ G L ++PR+ PK A ++ + P VF+FL V EH+ +V+N ++
Sbjct: 250 TGGGLLDNIPRVL---PKNAQAVVDVASWQRPAVFDFLQEKGNVDEHEMHRVLNCGVGMV 306
Query: 160 TSSARDQLKPALFYLQRLG 178
A+DQ++ AL L+ G
Sbjct: 307 ICVAQDQVEAALNELRAAG 325
>sp|Q9SAA2|CLPP6_ARATH ATP-dependent Clp protease proteolytic subunit 6, chloroplastic
OS=Arabidopsis thaliana GN=CLPP6 PE=1 SV=1
Length = 271
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 150 KVINKCPRLLTSSARDQLKPALFYLQRLGFK-DLNALAYQDSVLLV-----SKVENTLIP 203
K+ NK PR A+ P + + G DL+++ +++ ++ + ++V +I
Sbjct: 64 KIDNKAPRFGVIEAKKGNPPVMPSVMTPGGPLDLSSVLFRNRIIFIGQPINAQVAQRVIS 123
Query: 204 KLKYLESIGFSKDEAVLMVLRCPGLFTFSI 233
+L L SI D +LM L CPG T+S+
Sbjct: 124 QLVTLASIDDKSD--ILMYLNCPGGSTYSV 151
>sp|Q4A5S7|RPOB_MYCS5 DNA-directed RNA polymerase subunit beta OS=Mycoplasma synoviae
(strain 53) GN=rpoB PE=3 SV=2
Length = 1202
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 60/140 (42%), Gaps = 14/140 (10%)
Query: 77 GKALSLNPSLHSASLNSIE---------GIISFLQSKGILQKDLPRIFG---MCPKVLTA 124
G + ++ + SA+L++I+ I++FL S G+L D+ +FG + + +
Sbjct: 183 GSWIEVSHKVTSANLDAIKIKIDKNKNINIVTFLASFGLLADDIRYLFGKNEVLEETIRK 242
Query: 125 NIKTDLEPVFNFLSHDLEVPEHDFRKVINKCPRLLTSSARDQLKPALFYLQRLGFKDLNA 184
N D+ DL E FR +I K R+ S R L LF +R
Sbjct: 243 NKTIDITEFSRQEIMDL-CQEKIFR-IIRKGDRISEESKRSLLSGMLFDKKRYNLSKTGR 300
Query: 185 LAYQDSVLLVSKVENTLIPK 204
+ + LV ++ NT + +
Sbjct: 301 YMLNNKLSLVERITNTYLAQ 320
>sp|Q99JG2|ETBR2_MOUSE Endothelin B receptor-like protein 2 OS=Mus musculus GN=Gpr37l1
PE=1 SV=2
Length = 481
Score = 32.0 bits (71), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 14 ISSQTPSPT-SSSSPSNSQQLNIHLSTKPKSLLQ-NHPLYPPTQANLS 59
+ + +P+P ++P N Q+L ++L+ P LQ +PLYP T+++ S
Sbjct: 82 LEATSPNPDKDGATPGNGQELRVNLTGTPSQRLQIQNPLYPVTESSYS 129
>sp|Q5ZJC8|MTER1_CHICK mTERF domain-containing protein 1, mitochondrial OS=Gallus gallus
GN=MTERFD1 PE=2 SV=1
Length = 405
Score = 31.6 bits (70), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 158 LLTSSARDQLKPALFYLQRLGFKD--LNALAYQDSVLLVSKVENTLIPKLKYLESIGFSK 215
LLT + L +L+ +G +D L ++ +L ++E L ++ YL+S F
Sbjct: 167 LLTLDFEKDITKILLFLKDVGIEDNQLGPFLTKNPYILGEELE-ALETRVAYLKSKKFGN 225
Query: 216 DEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEIKGKLEELKEFPQYFAFSLEKRIKP 272
E MV R P L FS+E + +F E+ +++ K+ F L +++P
Sbjct: 226 AEITQMVSRAPYLLLFSVE-RLDNRLGFFKNELGLSVKKTKDLVIRFPRLLTGKLEP 281
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,080,908
Number of Sequences: 539616
Number of extensions: 4502635
Number of successful extensions: 14337
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 14317
Number of HSP's gapped (non-prelim): 39
length of query: 308
length of database: 191,569,459
effective HSP length: 117
effective length of query: 191
effective length of database: 128,434,387
effective search space: 24530967917
effective search space used: 24530967917
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)