Query 035716
Match_columns 308
No_of_seqs 221 out of 1306
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 09:12:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035716.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035716hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mva_O Transcription terminati 100.0 1.1E-45 3.7E-50 346.1 11.3 281 12-305 8-343 (343)
2 3m66_A Mterf3, mterf domain-co 100.0 9.7E-45 3.3E-49 329.0 14.2 236 63-305 6-259 (270)
3 4fp9_B Mterf domain-containing 100.0 2.8E-36 9.6E-41 279.6 15.2 203 93-305 45-263 (335)
4 3mva_O Transcription terminati 100.0 2.1E-34 7.1E-39 269.6 10.3 238 60-302 17-311 (343)
5 3m66_A Mterf3, mterf domain-co 100.0 2.3E-30 7.8E-35 234.4 10.8 202 95-301 6-219 (270)
6 4fp9_B Mterf domain-containing 99.9 1.7E-25 5.9E-30 207.2 12.7 177 60-250 44-227 (335)
7 4fzv_B Mterf domain-containing 99.5 2E-12 6.7E-17 103.9 15.0 161 135-302 39-215 (239)
8 4fzv_B Mterf domain-containing 98.4 1E-06 3.4E-11 70.8 9.5 106 66-173 37-145 (239)
9 1oqy_A HHR23A, UV excision rep 85.6 1.8 6.3E-05 39.9 7.2 39 202-248 326-364 (368)
10 3ff5_A PEX14P, peroxisomal bio 79.5 0.78 2.7E-05 30.2 1.5 24 94-117 30-53 (54)
11 3ff5_A PEX14P, peroxisomal bio 79.5 3.2 0.00011 27.2 4.5 34 188-225 21-54 (54)
12 4ae4_A Ubiquitin-associated pr 76.1 21 0.0007 27.2 9.1 98 131-249 9-116 (118)
13 2w84_A Peroxisomal membrane pr 69.1 6.9 0.00024 27.0 4.3 34 188-225 26-59 (70)
14 2w84_A Peroxisomal membrane pr 68.3 1.9 6.5E-05 29.8 1.3 24 94-117 35-58 (70)
15 1ify_A HHR23A, UV excision rep 64.9 7.1 0.00024 24.8 3.5 38 201-246 8-45 (49)
16 2knz_A Ubiquilin-4; cytoplasm, 64.5 12 0.00042 24.0 4.7 41 198-246 8-49 (53)
17 1veg_A NEDD8 ultimate buster-1 60.2 15 0.0005 26.3 4.8 40 202-249 30-69 (83)
18 2g3q_A Protein YBL047C; endocy 59.5 7.1 0.00024 23.9 2.7 35 203-245 6-40 (43)
19 4ae4_A Ubiquitin-associated pr 59.4 9.3 0.00032 29.2 3.9 97 62-176 8-113 (118)
20 1wji_A Tudor domain containing 59.4 17 0.00059 24.3 4.8 38 202-247 10-47 (63)
21 1vg5_A RSGI RUH-014, rhomboid 57.3 14 0.00048 25.6 4.2 39 200-246 28-66 (73)
22 2cos_A Serine/threonine protei 56.4 17 0.0006 23.6 4.2 42 202-251 10-51 (54)
23 2dak_A Ubiquitin carboxyl-term 56.3 22 0.00076 23.6 5.0 40 202-249 10-49 (63)
24 1z96_A DNA-damage, UBA-domain 55.6 13 0.00044 22.0 3.4 24 202-225 5-28 (40)
25 1wiv_A UBP14, ubiquitin-specif 50.9 28 0.00096 24.0 4.9 37 202-246 30-66 (73)
26 2jy5_A Ubiquilin-1; UBA, alter 49.5 13 0.00043 23.9 2.7 26 199-224 10-36 (52)
27 1wgn_A UBAP1, ubiquitin associ 49.2 24 0.00082 23.6 4.0 39 202-248 20-58 (63)
28 3idw_A Actin cytoskeleton-regu 49.1 7.1 0.00024 27.1 1.5 47 65-115 5-58 (72)
29 2ekk_A UBA domain from E3 ubiq 46.4 15 0.0005 22.9 2.6 35 202-245 10-44 (47)
30 2dai_A Ubadc1, ubiquitin assoc 44.7 40 0.0014 23.9 5.0 40 202-249 30-69 (83)
31 2ooa_A E3 ubiquitin-protein li 44.2 18 0.00063 23.3 2.8 25 201-225 11-35 (52)
32 2d9s_A CBL E3 ubiquitin protei 43.8 24 0.00082 22.8 3.3 25 201-225 9-33 (53)
33 2oo9_A E3 ubiquitin-protein li 42.5 27 0.00092 21.9 3.2 25 200-224 3-27 (46)
34 1wr1_B Ubiquitin-like protein 39.5 45 0.0015 21.9 4.3 41 198-246 14-55 (58)
35 1dv0_A DNA repair protein HHR2 37.9 12 0.00041 23.5 1.2 23 203-225 6-28 (47)
36 2dna_A Unnamed protein product 35.9 55 0.0019 22.2 4.3 19 198-216 16-34 (67)
37 1vej_A Riken cDNA 4931431F19; 35.8 53 0.0018 22.7 4.4 41 198-246 26-67 (74)
38 2bwb_A Ubiquitin-like protein 34.0 32 0.0011 21.3 2.8 25 199-223 5-30 (46)
39 2juj_A E3 ubiquitin-protein li 33.9 44 0.0015 21.8 3.3 39 200-246 6-44 (56)
40 2dag_A Ubiquitin carboxyl-term 33.6 30 0.001 23.9 2.8 41 202-249 10-50 (74)
41 2cpw_A CBL-interacting protein 31.8 37 0.0013 22.7 3.0 38 203-247 21-58 (64)
42 1wj7_A Hypothetical protein (R 28.0 46 0.0016 24.7 3.1 39 200-246 38-77 (104)
43 2dah_A Ubiquilin-3; UBA domain 27.5 29 0.00099 22.4 1.7 39 200-246 8-47 (54)
44 1whc_A RSGI RUH-027, UBA/UBX 3 26.4 40 0.0014 22.5 2.4 39 204-249 12-50 (64)
45 2cp8_A NEXT to BRCA1 gene 1 pr 26.0 77 0.0026 20.5 3.6 19 199-217 7-25 (54)
46 2dkl_A Trinucleotide repeat co 25.9 59 0.002 23.1 3.3 38 202-247 22-59 (85)
47 1q08_A Zn(II)-responsive regul 23.2 63 0.0021 22.9 3.1 23 202-224 6-28 (99)
48 2crn_A Ubash3A protein; compac 22.5 54 0.0018 21.9 2.4 39 204-249 12-50 (64)
49 1vek_A UBP14, ubiquitin-specif 22.2 76 0.0026 22.4 3.3 41 202-249 30-70 (84)
50 2c35_A Human RPB4, DNA-directe 21.2 33 0.0011 27.2 1.3 31 90-120 86-116 (152)
51 2ve7_C Kinetochore protein NUF 20.2 2E+02 0.0069 24.6 6.2 24 276-299 100-124 (250)
52 3ayh_A DNA-directed RNA polyme 20.2 22 0.00076 27.7 0.0 28 129-157 76-103 (136)
53 1ixs_A Holliday junction DNA h 20.1 1.1E+02 0.0036 20.2 3.5 25 201-225 17-41 (62)
54 1b0n_B Protein (SINI protein); 20.0 1.1E+02 0.0037 20.0 3.4 22 203-224 14-38 (57)
No 1
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=1.1e-45 Score=346.09 Aligned_cols=281 Identities=15% Similarity=0.260 Sum_probs=232.1
Q ss_pred cccccCCCCCCCCCCCCCcccccccccccchhhhhhCCCCCCCCCChhhhHHHHHHHHhhcCCCh---hhhhhhCCCccc
Q 035716 12 LCISSQTPSPTSSSSPSNSQQLNIHLSTKPKSLLQNHPLYPPTQANLSFQIKEKILCLEIMGVDS---GKALSLNPSLHS 88 (308)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~~~d~~~~~~~~l~~L~~~G~~~---~~il~~~P~lL~ 88 (308)
.|.|.+|.+.- +.+--+.+ ..++..++.+++++|.++. .+. +..+++++||.++|++. ++++.++|.+|.
T Consensus 8 ~~~~~~~~~~~---~~~~v~~L-~s~Gl~~~~~~~~~p~l~~--~s~-~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~ 80 (343)
T 3mva_O 8 KCHNTDSEPLK---NEDLLKNL-LTMGVDIDMARKRQPGVFH--RMI-TNEQDLKMFLLSKGASKEVIASIISRYPRAIT 80 (343)
T ss_dssp ---------------CCHHHHH-HHHTCCHHHHHHHCGGGGG--CSC-CCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGG
T ss_pred ccCCCCCCccc---cHHHHHHH-HHcCCCHHHHHHhCchhhc--cCc-ccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHh
Confidence 37776665321 12223334 4566678899999998876 444 46789999999999985 789999999999
Q ss_pred CCccCHHHHHHHHHhCCCCCCChhhhhhcCCce-eeCCcccchhHHHHHhhhhcCCCcchHHHHHhhcCccccccchhch
Q 035716 89 ASLNSIEGIISFLQSKGILQKDLPRIFGMCPKV-LTANIKTDLEPVFNFLSHDLEVPEHDFRKVINKCPRLLTSSARDQL 167 (308)
Q Consensus 89 ~s~~~l~~~v~~L~~lGls~~~i~~li~~~P~l-L~~~~e~~l~~~l~fL~~~~G~~~~~i~~li~~~P~lL~~~~~~~l 167 (308)
++++++.++++||+++|++++++.+++.++|++ ++.+.++++.|+++||+ ++|++.+++++++.++|++|+.++++ .
T Consensus 81 ~~~~~l~p~l~fL~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~-~lGl~~~~i~~ll~~~P~il~~~~e~-~ 158 (343)
T 3mva_O 81 RTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLY-SVGLTRKCLCRLLTNAPRTFSNSLDL-N 158 (343)
T ss_dssp CCHHHHHHHHHHHTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHH-HTTCCHHHHHHHHHHCGGGGTSCHHH-H
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHH-HhCCCHHHHHHHHHhCChhheeCHHH-h
Confidence 998899999999999999999999999999994 55543348999999996 89999999999999999999999765 4
Q ss_pred HHHHHHHHHcCCC------C--cchhhhhchhhhhcchhhhHHHHHHHHH------------------------------
Q 035716 168 KPALFYLQRLGFK------D--LNALAYQDSVLLVSKVENTLIPKLKYLE------------------------------ 209 (308)
Q Consensus 168 ~~~v~~L~~lG~~------~--~~~ii~~~P~ll~~~~~~~l~~~v~~L~------------------------------ 209 (308)
++++++|+++|++ + ..+++.++|.++..+ +++++++++||+
T Consensus 159 ~~~v~~L~~lgv~~g~~~p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~ 237 (343)
T 3mva_O 159 KQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYAR 237 (343)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHH
T ss_pred hHHHHHHHHhCCCcCCCcHHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHH
Confidence 9999999976653 1 256778888888877 566777766665
Q ss_pred -----------HcCCCHHHHHHHHhcCcceeeeccccchhHHHHHHHHHhCCChHHHhhcCccccccccCchHHHHHHHH
Q 035716 210 -----------SIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEIKGKLEELKEFPQYFAFSLEKRIKPRHMQAL 278 (308)
Q Consensus 210 -----------~lG~s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~~mg~~~~~l~~~P~~L~~sle~ri~pR~~~L~ 278 (308)
++||+++|+..|+.++|.+|++|.| +|++|++||.+ ||++.++|+++|++|+||+| ||+|||++|+
T Consensus 238 ~~~~~l~e~~~~lG~s~~ev~~~v~~~P~il~~s~~-~l~~k~~fl~~-mg~~~~~i~~~P~~l~~sle-ri~~R~~~L~ 314 (343)
T 3mva_O 238 RSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAEK-KFNDKIDCLME-ENISISQIIENPRVLDSSIS-TLKSRIKELV 314 (343)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHTCGGGGGSCHH-HHHHHHHHHHT-TTCCHHHHHHSGGGGGSCHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhCCchhcccHH-HHHHHHHHHHH-cCCCHHHHHhCCHHHhcCHH-HHHHHHHHHH
Confidence 4799999999999999999999997 79999999999 99999999999999999999 9999999999
Q ss_pred HcCCCCCch--hhcccCHHHHHHHhccCC
Q 035716 279 RNGARLSLP--VMLKTSDEEFNELIKPKP 305 (308)
Q Consensus 279 ~~G~~~~l~--~il~~sd~~F~~~~~~~~ 305 (308)
++|++++++ +||++||++|+++|.+.+
T Consensus 315 ~~g~~~~~~~~~~l~~s~~~F~~~~~~~~ 343 (343)
T 3mva_O 315 NAGCNLSTLNITLLSWSKKRYEAKLKKLS 343 (343)
T ss_dssp TTTCCSSSSCGGGGGSCHHHHHHHHHHTC
T ss_pred HCCCCCCCCcchhhcCCHHHHHHHHhccC
Confidence 999999888 999999999999998753
No 2
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=100.00 E-value=9.7e-45 Score=328.97 Aligned_cols=236 Identities=22% Similarity=0.340 Sum_probs=216.6
Q ss_pred HHHHHHHhhcCCChhhhhhhCCCc----ccCCcc-CHHHHHHHHHhCCCCCCChhhhhhcCCceeeCCcccchhHHHHHh
Q 035716 63 KEKILCLEIMGVDSGKALSLNPSL----HSASLN-SIEGIISFLQSKGILQKDLPRIFGMCPKVLTANIKTDLEPVFNFL 137 (308)
Q Consensus 63 ~~~l~~L~~~G~~~~~il~~~P~l----L~~s~~-~l~~~v~~L~~lGls~~~i~~li~~~P~lL~~~~e~~l~~~l~fL 137 (308)
.++++||.++|++..++ .++|.+ +.++++ +++++++||+++|+++++|++++.++|.+|++++++ +.|+++||
T Consensus 6 s~~l~~L~~lGv~~~~i-~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L 83 (270)
T 3m66_A 6 SETLQKLVLLGVDLSKI-EKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYL 83 (270)
T ss_dssp HHHHHHHHHTTCCHHHH-TTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHH-hhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHH
Confidence 48999999999999774 566766 999987 799999999999999999999999999999999986 99999999
Q ss_pred hhhcCCCcchHHHHHhhcCccccccchhchHHHHHHH-HHcCCCCc--chhhhhchhhhhcchhhhHHHHHHHH-HHcCC
Q 035716 138 SHDLEVPEHDFRKVINKCPRLLTSSARDQLKPALFYL-QRLGFKDL--NALAYQDSVLLVSKVENTLIPKLKYL-ESIGF 213 (308)
Q Consensus 138 ~~~~G~~~~~i~~li~~~P~lL~~~~~~~l~~~v~~L-~~lG~~~~--~~ii~~~P~ll~~~~~~~l~~~v~~L-~~lG~ 213 (308)
+ ++|++++++++++.++|++|+.+++ +++++++|| +++|+++. .+++.++|.++..+.+ .++++++++ +++||
T Consensus 84 ~-~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e-~~~~~v~~l~~~~G~ 160 (270)
T 3m66_A 84 H-SKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE-PVKENMKVYRLELGF 160 (270)
T ss_dssp H-HTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSH-HHHHHHHHHHHTSCC
T ss_pred H-HcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechH-HHHHHHHHHHHHcCC
Confidence 6 8999999999999999999999977 699999999 47999864 6889999999999975 699999987 79999
Q ss_pred CHHHHHHHHhcCcceeeeccccchhHHHHHHHHHhCCChHHHhhcCccccccccCchHHHHHHHHHc---CC------CC
Q 035716 214 SKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEIKGKLEELKEFPQYFAFSLEKRIKPRHMQALRN---GA------RL 284 (308)
Q Consensus 214 s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~~mg~~~~~l~~~P~~L~~sle~ri~pR~~~L~~~---G~------~~ 284 (308)
+.+|+..|+.++|.+|++|.+ +|++|++||.++||++.++|+++|++|+||+| ||+|||.||+.. |+ .+
T Consensus 161 s~~ei~~~v~~~P~il~~s~~-~l~~k~~fL~~~mg~~~~~i~~~P~~l~~Sle-ri~pR~~~l~~L~~~g~~~~~~~~~ 238 (270)
T 3m66_A 161 KHNEIQHMITRIPKMLTANKM-KLTETFDFVHNVMSIPHHIIVKFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAKPNYI 238 (270)
T ss_dssp CHHHHHHHHHHCGGGGTSCHH-HHHHHHHHHHTTSCCCHHHHHHCGGGGGSCHH-HHHHHHHHHHHHTCCCCCTTSSSCC
T ss_pred CHHHHHHHHHhCChhheecHH-HHHHHHHHHHHHhCCCHHHHHhCchHhhCCHH-HHHHHHHHHHHhhccCCCCCCCCCC
Confidence 999999999999999999995 99999999999999999999999999999999 999999998874 44 25
Q ss_pred CchhhcccCHHHHHHHhccCC
Q 035716 285 SLPVMLKTSDEEFNELIKPKP 305 (308)
Q Consensus 285 ~l~~il~~sd~~F~~~~~~~~ 305 (308)
++.+++.+||++|+++|++.+
T Consensus 239 ~L~~~l~~sd~~F~~~~~~~~ 259 (270)
T 3m66_A 239 SLDKLVSIPDEIFCEEIAKAS 259 (270)
T ss_dssp CHHHHHHSCHHHHHHHTTCSC
T ss_pred CHHHHhcCCHHHHHHHHhcCC
Confidence 677899999999999999764
No 3
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=100.00 E-value=2.8e-36 Score=279.58 Aligned_cols=203 Identities=20% Similarity=0.324 Sum_probs=186.5
Q ss_pred CHHHHHHHHHhCCCCCCChhhhhhcCCceeeCCcccchhHHHHHhhhhcCCCcchHHHHHhhcCccccccchhchHHHHH
Q 035716 93 SIEGIISFLQSKGILQKDLPRIFGMCPKVLTANIKTDLEPVFNFLSHDLEVPEHDFRKVINKCPRLLTSSARDQLKPALF 172 (308)
Q Consensus 93 ~l~~~v~~L~~lGls~~~i~~li~~~P~lL~~~~e~~l~~~l~fL~~~~G~~~~~i~~li~~~P~lL~~~~~~~l~~~v~ 172 (308)
+++..+..|.++|+++++|++++..+|.++.. ++.+++.||. .+|++.++|+++|.++|++|++++ ++|+++++
T Consensus 45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----~l~~~i~~L~-~LGls~e~V~kiL~k~P~lL~~s~-e~L~~~l~ 118 (335)
T 4fp9_B 45 ELERVMSSLLDMGFSNAHINELLSVRRGASLQ----QLLDIISEFI-LLGLNPEPVCVVLKKSPQLLKLPI-MQMRKRSS 118 (335)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----HHHHHHHHHH-HTTCCHHHHHHHHHHCGGGGGSCH-HHHHHHHH
T ss_pred cHHHHHHHHHHCCCCHHHHHHHHHhCcccchh----HHHHHHHHHH-HcCCCHHHHHHHHHhChhhccCCH-HHHHHHHH
Confidence 47889999999999999999999999998743 5888999996 899999999999999999999996 47999999
Q ss_pred HHHHcCCCCc--chhhhhchhhhhcchhhhHHHHHHHH-HHcCCCHHHHHHHHhcCcceeeeccccchhHHHHHHHHHhC
Q 035716 173 YLQRLGFKDL--NALAYQDSVLLVSKVENTLIPKLKYL-ESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEIK 249 (308)
Q Consensus 173 ~L~~lG~~~~--~~ii~~~P~ll~~~~~~~l~~~v~~L-~~lG~s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~~mg 249 (308)
||+++|++.. .+++.++|++++++.+ .+..++.+| .++||+.++|..||.++|.||++|.+ +|++|++||.++||
T Consensus 119 fL~~lGl~~~~i~~ll~~~P~lL~~s~e-~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~e-~L~~K~efLv~~Mg 196 (335)
T 4fp9_B 119 YLQKLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLG-QLEYKFQYAYFRMG 196 (335)
T ss_dssp HHHHTTCTTTTHHHHHHHCGGGGTSCHH-HHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHH-HHHHHHHHHHTTTC
T ss_pred HHHHcCCCHHHHHHHHHhCchhhccChH-HHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHH-HHHHHHHHHHHHhC
Confidence 9999999753 6889999999999975 699999999 58999999999999999999999996 89999999999999
Q ss_pred CChHHHhhcCccccccccCchHHHHHHHHHcCC-------------CCCchhhcccCHHHHHHHhccCC
Q 035716 250 GKLEELKEFPQYFAFSLEKRIKPRHMQALRNGA-------------RLSLPVMLKTSDEEFNELIKPKP 305 (308)
Q Consensus 250 ~~~~~l~~~P~~L~~sle~ri~pR~~~L~~~G~-------------~~~l~~il~~sd~~F~~~~~~~~ 305 (308)
++.++|++ |.+|+||++ ||+|||.||++.|+ +++|..|+..||++|+.++++.+
T Consensus 197 l~~~eIvk-P~~l~ySLe-RIkpRH~fL~~lG~~q~~~~k~~~~~~npsL~~il~~sd~~F~~~vA~~s 263 (335)
T 4fp9_B 197 IKHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTS 263 (335)
T ss_dssp CCHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTSCCCCCSSSCCSSCCCCHHHHTTSCHHHHHHHTSCCC
T ss_pred CCHHHccc-cchhhccHH-HHHHHHHHHHHcCCccCCCcccccCCCCccHHHHHcCCHHHHHHHHHhcC
Confidence 99999997 999999998 99999999999997 24688999999999999999764
No 4
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=2.1e-34 Score=269.56 Aligned_cols=238 Identities=16% Similarity=0.283 Sum_probs=197.8
Q ss_pred hhHHHHHHHHhhcCCChhhhhhhCCCcccCCccCHHHHHHHHHhCCCCCCChhhhhhcCCceeeCCcccchhHHHHHhhh
Q 035716 60 FQIKEKILCLEIMGVDSGKALSLNPSLHSASLNSIEGIISFLQSKGILQKDLPRIFGMCPKVLTANIKTDLEPVFNFLSH 139 (308)
Q Consensus 60 ~~~~~~l~~L~~~G~~~~~il~~~P~lL~~s~~~l~~~v~~L~~lGls~~~i~~li~~~P~lL~~~~e~~l~~~l~fL~~ 139 (308)
.+...+++||.++|++.+++++++|.++..++++++++++||+++|+++++|++++.++|.+|+++++ ++.|+++||+
T Consensus 17 ~~~~~~v~~L~s~Gl~~~~~~~~~p~l~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~-~l~p~l~fL~- 94 (343)
T 3mva_O 17 LKNEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE-NLSKRWDLWR- 94 (343)
T ss_dssp ---CCHHHHHHHHTCCHHHHHHHCGGGGGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHH-HHHHHHHHHT-
T ss_pred cccHHHHHHHHHcCCCHHHHHHhCchhhccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHH-HHHHHHHHHH-
Confidence 34567999999999999999999999999999999999999999999999999999999999999975 7999999996
Q ss_pred hcCCCcchHHHHHhhcCc-cccccchhchHHHHHHHHHcCCCCc--chhhhhchhhhhcchhhhHHHHHHHHHHcCCC--
Q 035716 140 DLEVPEHDFRKVINKCPR-LLTSSARDQLKPALFYLQRLGFKDL--NALAYQDSVLLVSKVENTLIPKLKYLESIGFS-- 214 (308)
Q Consensus 140 ~~G~~~~~i~~li~~~P~-lL~~~~~~~l~~~v~~L~~lG~~~~--~~ii~~~P~ll~~~~~~~l~~~v~~L~~lG~s-- 214 (308)
++|++++++++++.++|+ +++...+++++++++||+++|+++. .+++.++|++++.+.+. .++++++|+++|++
T Consensus 95 ~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~-~~~~v~~L~~lgv~~g 173 (343)
T 3mva_O 95 KIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDL-NKQMVEFLQAAGLSLG 173 (343)
T ss_dssp TTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHH-HHHHHHHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHH-hhHHHHHHHHhCCCcC
Confidence 899999999999999999 4555533589999999999999854 78999999999999875 59999999866653
Q ss_pred ----HHHHHHHHhcCcceeeeccccchhHHHHHHHHHh----------------------------------------CC
Q 035716 215 ----KDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEI----------------------------------------KG 250 (308)
Q Consensus 215 ----~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~~m----------------------------------------g~ 250 (308)
.+.|.+|+.++|.+|++|. ++++++++||.+++ |+
T Consensus 174 ~~~p~~~I~~il~~~P~iL~~s~-~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~~~lG~ 252 (343)
T 3mva_O 174 HNDPADFVRKIIFKNPFILIQST-KRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGC 252 (343)
T ss_dssp CSCHHHHHHHHHHHCGGGGGSCH-HHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHHHHHTTTC
T ss_pred CCcHHHHHHHHHHhCChHhcCCH-HHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHHHHHHcCC
Confidence 7899999999999999995 59999999999634 55
Q ss_pred ChHH----HhhcCccccccccCchHHHHHHHHHcCCCC----CchhhcccCHHHHHHHhc
Q 035716 251 KLEE----LKEFPQYFAFSLEKRIKPRHMQALRNGARL----SLPVMLKTSDEEFNELIK 302 (308)
Q Consensus 251 ~~~~----l~~~P~~L~~sle~ri~pR~~~L~~~G~~~----~l~~il~~sd~~F~~~~~ 302 (308)
+.++ +.++|.+|.+|.| +|+|+++||.+.|+.. ..+.++.+|-++-..|+.
T Consensus 253 s~~ev~~~v~~~P~il~~s~~-~l~~k~~fl~~mg~~~~~i~~~P~~l~~sleri~~R~~ 311 (343)
T 3mva_O 253 TEEEVQKFVLSYPDVIFLAEK-KFNDKIDCLMEENISISQIIENPRVLDSSISTLKSRIK 311 (343)
T ss_dssp CHHHHHHHHHTCGGGGGSCHH-HHHHHHHHHHTTTCCHHHHHHSGGGGGSCHHHHHHHHH
T ss_pred CHHHHHHHHHhCCchhcccHH-HHHHHHHHHHHcCCCHHHHHhCCHHHhcCHHHHHHHHH
Confidence 5444 3567777777766 3777777776666632 345666777666666654
No 5
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=99.96 E-value=2.3e-30 Score=234.43 Aligned_cols=202 Identities=18% Similarity=0.264 Sum_probs=184.7
Q ss_pred HHHHHHHHhCCCCCCChhhhhhcCCceeeCCcccchhHHHHHhhhhcCCCcchHHHHHhhcCccccccchhchHHHHHHH
Q 035716 95 EGIISFLQSKGILQKDLPRIFGMCPKVLTANIKTDLEPVFNFLSHDLEVPEHDFRKVINKCPRLLTSSARDQLKPALFYL 174 (308)
Q Consensus 95 ~~~v~~L~~lGls~~~i~~li~~~P~lL~~~~e~~l~~~l~fL~~~~G~~~~~i~~li~~~P~lL~~~~~~~l~~~v~~L 174 (308)
.+++++|.++|++.++|.+....+|.+|++++++++.|+++||+ ++|++++++++++.++|++|+.++++ ++++++||
T Consensus 6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~-~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L 83 (270)
T 3m66_A 6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLK-DVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYL 83 (270)
T ss_dssp HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHH-HHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHH-HcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHH
Confidence 57899999999999999888777888899999989999999996 89999999999999999999999887 99999999
Q ss_pred HHcCCCCc--chhhhhchhhhhcchhhhHHHHHHHH-HHcCCCHHHHHHHHhcCcceeeeccccchhHHHHHHHHHhCCC
Q 035716 175 QRLGFKDL--NALAYQDSVLLVSKVENTLIPKLKYL-ESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEIKGK 251 (308)
Q Consensus 175 ~~lG~~~~--~~ii~~~P~ll~~~~~~~l~~~v~~L-~~lG~s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~~mg~~ 251 (308)
+++|+++. .+++.++|+++..+.+ +++++++|| +++|++.+++.+++.++|.++++|.| +++++++|+..++|++
T Consensus 84 ~~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e-~~~~~v~~l~~~~G~s 161 (270)
T 3m66_A 84 HSKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE-PVKENMKVYRLELGFK 161 (270)
T ss_dssp HHTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSH-HHHHHHHHHHHTSCCC
T ss_pred HHcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechH-HHHHHHHHHHHHcCCC
Confidence 99999754 6889999999999987 599999999 58999999999999999999999997 8999999988889999
Q ss_pred hHH----HhhcCccccccccCchHHHHHHHH-HcCCCC----CchhhcccCHHHHHHHh
Q 035716 252 LEE----LKEFPQYFAFSLEKRIKPRHMQAL-RNGARL----SLPVMLKTSDEEFNELI 301 (308)
Q Consensus 252 ~~~----l~~~P~~L~~sle~ri~pR~~~L~-~~G~~~----~l~~il~~sd~~F~~~~ 301 (308)
.++ +.++|.+|++|.+ +|+|+++||. +.|++. ..+.++.+|.++...|+
T Consensus 162 ~~ei~~~v~~~P~il~~s~~-~l~~k~~fL~~~mg~~~~~i~~~P~~l~~Sleri~pR~ 219 (270)
T 3m66_A 162 HNEIQHMITRIPKMLTANKM-KLTETFDFVHNVMSIPHHIIVKFPQVFNTRLFKVKERH 219 (270)
T ss_dssp HHHHHHHHHHCGGGGTSCHH-HHHHHHHHHHTTSCCCHHHHHHCGGGGGSCHHHHHHHH
T ss_pred HHHHHHHHHhCChhheecHH-HHHHHHHHHHHHhCCCHHHHHhCchHhhCCHHHHHHHH
Confidence 886 4689999999995 9999999995 589853 56899999988888886
No 6
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=99.92 E-value=1.7e-25 Score=207.22 Aligned_cols=177 Identities=17% Similarity=0.303 Sum_probs=160.9
Q ss_pred hhHHHHHHHHhhcCCCh---hhhhhhCCCcccCCccCHHHHHHHHHhCCCCCCChhhhhhcCCceeeCCcccchhHHHHH
Q 035716 60 FQIKEKILCLEIMGVDS---GKALSLNPSLHSASLNSIEGIISFLQSKGILQKDLPRIFGMCPKVLTANIKTDLEPVFNF 136 (308)
Q Consensus 60 ~~~~~~l~~L~~~G~~~---~~il~~~P~lL~~s~~~l~~~v~~L~~lGls~~~i~~li~~~P~lL~~~~e~~l~~~l~f 136 (308)
.+++..+..|.++||++ ++++.++|.++. +++.+++.||.++|++.++|.++|.++|++|+++++ +|+++++|
T Consensus 44 ~~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~---~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~f 119 (335)
T 4fp9_B 44 LELERVMSSLLDMGFSNAHINELLSVRRGASL---QQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSY 119 (335)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHCSSCCH---HHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHH
T ss_pred ccHHHHHHHHHHCCCCHHHHHHHHHhCcccch---hHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHH
Confidence 46789999999999996 789999999863 457899999999999999999999999999999997 69999999
Q ss_pred hhhhcCCCcchHHHHHhhcCccccccchhchHHHHHHHH-HcCCCCc--chhhhhchhhhhcchhhhHHHHHHHHH-HcC
Q 035716 137 LSHDLEVPEHDFRKVINKCPRLLTSSARDQLKPALFYLQ-RLGFKDL--NALAYQDSVLLVSKVENTLIPKLKYLE-SIG 212 (308)
Q Consensus 137 L~~~~G~~~~~i~~li~~~P~lL~~~~~~~l~~~v~~L~-~lG~~~~--~~ii~~~P~ll~~~~~~~l~~~v~~L~-~lG 212 (308)
|+ ++|++.+++++++.++|++|+++.+ +++.++.+|. ++|+++. ..++.++|.+|.++. +.|++|++||. +||
T Consensus 120 L~-~lGl~~~~i~~ll~~~P~lL~~s~e-~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~-e~L~~K~efLv~~Mg 196 (335)
T 4fp9_B 120 LQ-KLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDL-GQLEYKFQYAYFRMG 196 (335)
T ss_dssp HH-HTTCTTTTHHHHHHHCGGGGTSCHH-HHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCH-HHHHHHHHHHHTTTC
T ss_pred HH-HcCCCHHHHHHHHHhCchhhccChH-HHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCH-HHHHHHHHHHHHHhC
Confidence 96 7999999999999999999999955 7999999987 5999864 789999999999995 57999999995 899
Q ss_pred CCHHHHHHHHhcCcceeeeccccchhHHHHHHHHHhCC
Q 035716 213 FSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEIKG 250 (308)
Q Consensus 213 ~s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~~mg~ 250 (308)
++.++|. + |.+|+||.+ +|++|+.||.. +|.
T Consensus 197 l~~~eIv----k-P~~l~ySLe-RIkpRH~fL~~-lG~ 227 (335)
T 4fp9_B 197 IKHPDIV----K-SEYLQYSLT-KIKQRHIYLER-LGR 227 (335)
T ss_dssp CCHHHHH----H-TTGGGSCHH-HHHHHHHHHHH-HTS
T ss_pred CCHHHcc----c-cchhhccHH-HHHHHHHHHHH-cCC
Confidence 9999985 3 999999998 99999999996 886
No 7
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=99.46 E-value=2e-12 Score=103.91 Aligned_cols=161 Identities=23% Similarity=0.402 Sum_probs=141.7
Q ss_pred HHhhhhcCCCcchHHHHHhhcCccccccchhchHHHHHHHHHcCCCC--cchhhhhchhhhhcchhhhHHHHHHHHH-Hc
Q 035716 135 NFLSHDLEVPEHDFRKVINKCPRLLTSSARDQLKPALFYLQRLGFKD--LNALAYQDSVLLVSKVENTLIPKLKYLE-SI 211 (308)
Q Consensus 135 ~fL~~~~G~~~~~i~~li~~~P~lL~~~~~~~l~~~v~~L~~lG~~~--~~~ii~~~P~ll~~~~~~~l~~~v~~L~-~l 211 (308)
+|+ -+|++++-++-++.+.|++|..++- .++.+-.+|+.+|+.+ ..+++.-+|.+++..- ..+...+..|+ .+
T Consensus 39 efi--llglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmrq-qdindtvrllkekc 114 (239)
T 4fzv_B 39 EFI--LLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQ-QDINDTVRLLKEKC 114 (239)
T ss_dssp HHH--HHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCH-HHHHHHHHHHHHHS
T ss_pred HHH--hhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHHH-hhHhHHHHHHHHhH
Confidence 454 4899999999999999999999965 6899999999988764 4688899999999874 46999999995 78
Q ss_pred CCCHHHHHHHHhcCcceeeeccccchhHHHHHHHHHhCCChHHHhhcCccccccccCchHHHHHHHHHcCC---------
Q 035716 212 GFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEIKGKLEELKEFPQYFAFSLEKRIKPRHMQALRNGA--------- 282 (308)
Q Consensus 212 G~s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~~mg~~~~~l~~~P~~L~~sle~ri~pR~~~L~~~G~--------- 282 (308)
-|+.+++.+++..||.+|.-+.. .+.-|++|..-.||+..-+|++ ..+|.||+. +|+.|+-+|.+.|.
T Consensus 115 lftvqqvtkilhscpsvlredlg-qleykfqyayfrmgikhpdivk-seylqyslt-kikqrhiylerlgryqtpdkkgq 191 (239)
T 4fzv_B 115 LFTVQQVTKILHSCPSVLREDLG-QLEYKFQYAYFRMGIKHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQ 191 (239)
T ss_dssp CCCHHHHHHHHHHCGGGGTSCTT-HHHHHHHHHHHTSCCCHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTCCCCCCSSSC
T ss_pred HhhHHHHHHHHHhCcHHHHHHHh-hhhhhHhHHHHHccCCCcchhH-HHHHHHHHH-HHHHHHhHHHHhcccCCCCccCC
Confidence 89999999999999999999995 9999999999899999989987 689999995 89999999999886
Q ss_pred ----CCCchhhcccCHHHHHHHhc
Q 035716 283 ----RLSLPVMLKTSDEEFNELIK 302 (308)
Q Consensus 283 ----~~~l~~il~~sd~~F~~~~~ 302 (308)
++-+.+|+..||.+|..+-+
T Consensus 192 tqipnpllkdilrvseaeflarta 215 (239)
T 4fzv_B 192 TQIPNPLLKDILRVSEAEFLARTA 215 (239)
T ss_dssp CSSCCCCHHHHHTSCHHHHHHHTS
T ss_pred ccCCChHHHHHHHHhHHHHHHHHh
Confidence 23467999999999998865
No 8
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=98.44 E-value=1e-06 Score=70.82 Aligned_cols=106 Identities=22% Similarity=0.414 Sum_probs=54.9
Q ss_pred HHHHhhcCCCh---hhhhhhCCCcccCCccCHHHHHHHHHhCCCCCCChhhhhhcCCceeeCCcccchhHHHHHhhhhcC
Q 035716 66 ILCLEIMGVDS---GKALSLNPSLHSASLNSIEGIISFLQSKGILQKDLPRIFGMCPKVLTANIKTDLEPVFNFLSHDLE 142 (308)
Q Consensus 66 l~~L~~~G~~~---~~il~~~P~lL~~s~~~l~~~v~~L~~lGls~~~i~~li~~~P~lL~~~~e~~l~~~l~fL~~~~G 142 (308)
+.-+.-+|+.+ .-++++.|.++....-.++.+-.||+.+|+....+.+++-.||.|++..-. ++...+..|++.+-
T Consensus 37 isefillglnpepvcvvlkkspqllklpimqmrkrssylqklglgegklkrvlyccpeiftmrqq-dindtvrllkekcl 115 (239)
T 4fzv_B 37 ISEFILLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLLKEKCL 115 (239)
T ss_dssp HHHHHHHCCCTTHHHHHHHSCGGGGTSCHHHHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHH-HHHHHHHHHHHHSC
T ss_pred HHHHHhhcCCCCceEEEecCCHHHhcChHHHHHHHHHHHHHhCCCccchhhheecCcHHHHHHHh-hHhHHHHHHHHhHH
Confidence 33344455543 334555555555544455555555555555555555555555555555432 45555555555555
Q ss_pred CCcchHHHHHhhcCccccccchhchHHHHHH
Q 035716 143 VPEHDFRKVINKCPRLLTSSARDQLKPALFY 173 (308)
Q Consensus 143 ~~~~~i~~li~~~P~lL~~~~~~~l~~~v~~ 173 (308)
|+..++.+++..||.+|..++. .+.-++.+
T Consensus 116 ftvqqvtkilhscpsvlredlg-qleykfqy 145 (239)
T 4fzv_B 116 FTVQQVTKILHSCPSVLREDLG-QLEYKFQY 145 (239)
T ss_dssp CCHHHHHHHHHHCGGGGTSCTT-HHHHHHHH
T ss_pred hhHHHHHHHHHhCcHHHHHHHh-hhhhhHhH
Confidence 5555555555555555555432 34444443
No 9
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=85.60 E-value=1.8 Score=39.94 Aligned_cols=39 Identities=15% Similarity=0.307 Sum_probs=27.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhcCcceeeeccccchhHHHHHHHHHh
Q 035716 202 IPKLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEI 248 (308)
Q Consensus 202 ~~~v~~L~~lG~s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~~m 248 (308)
+..|+-|..|||+++.+.+.+..| +++...-.+||...+
T Consensus 326 ~eaI~rL~~mGF~~~~a~~al~a~--------~~n~e~A~~~L~~~~ 364 (368)
T 1oqy_A 326 KEAIERLKALGFPESLVIQAYFAC--------EKNENLAANFLLSQN 364 (368)
T ss_dssp HHHHHHHHHHTCCSHHHHHHTSSS--------SSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHhhCc
Confidence 467888889999998887776655 235666677777543
No 10
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=79.49 E-value=0.78 Score=30.17 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=15.9
Q ss_pred HHHHHHHHHhCCCCCCChhhhhhc
Q 035716 94 IEGIISFLQSKGILQKDLPRIFGM 117 (308)
Q Consensus 94 l~~~v~~L~~lGls~~~i~~li~~ 117 (308)
+..+++||++-|++.++|...+.+
T Consensus 30 ~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 30 LATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHc
Confidence 446677777777777777666554
No 11
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=79.46 E-value=3.2 Score=27.23 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=26.4
Q ss_pred hchhhhhcchhhhHHHHHHHHHHcCCCHHHHHHHHhcC
Q 035716 188 QDSVLLVSKVENTLIPKLKYLESIGFSKDEAVLMVLRC 225 (308)
Q Consensus 188 ~~P~ll~~~~~~~l~~~v~~L~~lG~s~~~i~~~l~~~ 225 (308)
++|.+-.. .+..|++||++=|++.+||..++.+.
T Consensus 21 ~dp~V~~s----p~~~K~~FL~sKGLt~~EI~~Al~rs 54 (54)
T 3ff5_A 21 QNSRVRQS----PLATRRAFLKKKGLTDEEIDLAFQQS 54 (54)
T ss_dssp HCTTGGGS----CHHHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred CChhhhcC----CHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 45665433 36789999999999999999888763
No 12
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=76.11 E-value=21 Score=27.21 Aligned_cols=98 Identities=12% Similarity=0.159 Sum_probs=59.6
Q ss_pred hHHHHHhhhhcCCCcchHHHHHhhcCccccccchhchHHHHHHHHH------cCCCCc--chhhhhchhhhhcchh--hh
Q 035716 131 EPVFNFLSHDLEVPEHDFRKVINKCPRLLTSSARDQLKPALFYLQR------LGFKDL--NALAYQDSVLLVSKVE--NT 200 (308)
Q Consensus 131 ~~~l~fL~~~~G~~~~~i~~li~~~P~lL~~~~~~~l~~~v~~L~~------lG~~~~--~~ii~~~P~ll~~~~~--~~ 200 (308)
+..+.-|. +.||+...+.+.+.++-. +....++||.. .|+++. ...+..+ ..+.. ..
T Consensus 9 ~~~v~~l~-~MGFp~~~~~kAl~~~g~--------~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~----~~~~~~~~~ 75 (118)
T 4ae4_A 9 RQCVETVV-NMGYSYECVLRAMKAAGA--------NIEQILDYLFAHGQLCEKGFDPLLVEEALEMH----QCSEEKMME 75 (118)
T ss_dssp HHHHHHHH-HTTCCHHHHHHHHHHHCS--------CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHC----SSCHHHHHH
T ss_pred HHHHHHHH-HcCCCHHHHHHHHHHHCc--------CHHHHHHHHHHhchhcccCCChhhhHHHHHhc----cCCcccccc
Confidence 45667774 789988888888765431 34456666653 455432 1111111 11111 11
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhcCcceeeeccccchhHHHHHHHHHhC
Q 035716 201 LIPKLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEIK 249 (308)
Q Consensus 201 l~~~v~~L~~lG~s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~~mg 249 (308)
-...+.-|.+|||+.+++.+.++.+ .+.+.+-++||....|
T Consensus 76 ~~~~v~~L~eMGF~~~~a~~AL~~~--------~nd~erAlewL~~~~~ 116 (118)
T 4ae4_A 76 FLQLMSKFKEMGFELKDIKEVLLLH--------NNDQDNALEDLMARAG 116 (118)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHT--------TTCHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHHhcc
Confidence 2346778889999999999888876 2578888888886554
No 13
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=69.12 E-value=6.9 Score=26.99 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=26.9
Q ss_pred hchhhhhcchhhhHHHHHHHHHHcCCCHHHHHHHHhcC
Q 035716 188 QDSVLLVSKVENTLIPKLKYLESIGFSKDEAVLMVLRC 225 (308)
Q Consensus 188 ~~P~ll~~~~~~~l~~~v~~L~~lG~s~~~i~~~l~~~ 225 (308)
++|.+-.. .+..|++||++=|++.+||..++.+.
T Consensus 26 qdp~V~~s----p~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 26 QNSRVRQS----PLATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp CSTTGGGS----CHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CChhhhhC----CHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 45666433 36789999999999999999988774
No 14
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=68.26 E-value=1.9 Score=29.83 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=16.4
Q ss_pred HHHHHHHHHhCCCCCCChhhhhhc
Q 035716 94 IEGIISFLQSKGILQKDLPRIFGM 117 (308)
Q Consensus 94 l~~~v~~L~~lGls~~~i~~li~~ 117 (308)
+..+++||++.|++.++|...+.+
T Consensus 35 ~~~K~~FL~sKGLt~eEI~~Al~r 58 (70)
T 2w84_A 35 LATRRAFLKKKGLTDEEIDMAFQQ 58 (70)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 446777777777777777666655
No 15
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=64.92 E-value=7.1 Score=24.78 Aligned_cols=38 Identities=21% Similarity=0.269 Sum_probs=30.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhcCcceeeeccccchhHHHHHHHH
Q 035716 201 LIPKLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNL 246 (308)
Q Consensus 201 l~~~v~~L~~lG~s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~ 246 (308)
-..+++-|.+|||+++++...++.+- .++..-++||..
T Consensus 8 ~~~~i~~L~~MGF~~~~a~~AL~~~~--------~n~e~A~e~L~~ 45 (49)
T 1ify_A 8 YETMLTEIMSMGYERERVVAALRASY--------NNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHTTT--------SCSHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhC--------CCHHHHHHHHHh
Confidence 56788999999999999998888762 256677788875
No 16
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=64.49 E-value=12 Score=24.04 Aligned_cols=41 Identities=17% Similarity=0.314 Sum_probs=25.2
Q ss_pred hhhHHHHHHHHHHcCC-CHHHHHHHHhcCcceeeeccccchhHHHHHHHH
Q 035716 198 ENTLIPKLKYLESIGF-SKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNL 246 (308)
Q Consensus 198 ~~~l~~~v~~L~~lG~-s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~ 246 (308)
+.....+++-|.+||| +++.+.+.+..+- .++..-++||..
T Consensus 8 e~~~~~~l~~L~~MGF~~~~~~~~AL~~t~--------gnve~Ave~L~~ 49 (53)
T 2knz_A 8 EVRFQQQLEQLNSMGFINREANLQALIATG--------GDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHHHT--------SCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHhC--------CCHHHHHHHHHH
Confidence 3456677777888888 6666555555431 246666666653
No 17
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=60.18 E-value=15 Score=26.26 Aligned_cols=40 Identities=13% Similarity=0.008 Sum_probs=32.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhcCcceeeeccccchhHHHHHHHHHhC
Q 035716 202 IPKLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEIK 249 (308)
Q Consensus 202 ~~~v~~L~~lG~s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~~mg 249 (308)
..+++-|.+|||+++++.+.++.+- .++..-++||....|
T Consensus 30 ee~I~~Lv~MGF~~~~A~~AL~~t~--------gdve~A~e~L~sh~~ 69 (83)
T 1veg_A 30 QESINQLVYMGFDTVVAEAALRVFG--------GNVQLAAQTLAHHGG 69 (83)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHTT--------TCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHHhCCC
Confidence 4678889999999999988887652 358888999998777
No 18
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=59.47 E-value=7.1 Score=23.85 Aligned_cols=35 Identities=17% Similarity=0.407 Sum_probs=25.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHhcCcceeeeccccchhHHHHHHH
Q 035716 203 PKLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFN 245 (308)
Q Consensus 203 ~~v~~L~~lG~s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~ 245 (308)
..++-|.+|||+++++.+.+..+ ..++..-++||.
T Consensus 6 ~~i~~L~~MGF~~~~a~~AL~~~--------~~n~e~A~~~L~ 40 (43)
T 2g3q_A 6 LAVEELSGMGFTEEEAHNALEKC--------NWDLEAATNFLL 40 (43)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHH--------TSCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh--------CcCHHHHHHHHH
Confidence 56888899999999988877764 124556666665
No 19
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=59.41 E-value=9.3 Score=29.19 Aligned_cols=97 Identities=15% Similarity=0.166 Sum_probs=58.8
Q ss_pred HHHHHHHHhhcCCChh---hhhhhCCCcccCCccCHHHHHHHHH------hCCCCCCChhhhhhcCCceeeCCcccchhH
Q 035716 62 IKEKILCLEIMGVDSG---KALSLNPSLHSASLNSIEGIISFLQ------SKGILQKDLPRIFGMCPKVLTANIKTDLEP 132 (308)
Q Consensus 62 ~~~~l~~L~~~G~~~~---~il~~~P~lL~~s~~~l~~~v~~L~------~lGls~~~i~~li~~~P~lL~~~~e~~l~~ 132 (308)
=+..++.|.++||+.. +++... .- +.+..++||. +-|++..++...+..+..--.... .-..
T Consensus 8 e~~~v~~l~~MGFp~~~~~kAl~~~------g~-~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~~~--~~~~ 78 (118)
T 4ae4_A 8 ERQCVETVVNMGYSYECVLRAMKAA------GA-NIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMM--EFLQ 78 (118)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH------CS-CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHHH--HHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH------Cc-CHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCccccc--cCHH
Confidence 3578899999999974 344333 11 4566666664 456666666666654321000000 1224
Q ss_pred HHHHhhhhcCCCcchHHHHHhhcCccccccchhchHHHHHHHHH
Q 035716 133 VFNFLSHDLEVPEHDFRKVINKCPRLLTSSARDQLKPALFYLQR 176 (308)
Q Consensus 133 ~l~fL~~~~G~~~~~i~~li~~~P~lL~~~~~~~l~~~v~~L~~ 176 (308)
.+.-|. +.||+.+.+.+.+..+- +++...+++|..
T Consensus 79 ~v~~L~-eMGF~~~~a~~AL~~~~--------nd~erAlewL~~ 113 (118)
T 4ae4_A 79 LMSKFK-EMGFELKDIKEVLLLHN--------NDQDNALEDLMA 113 (118)
T ss_dssp HHHHHH-HTTCCHHHHHHHHHHTT--------TCHHHHHHHHHH
T ss_pred HHHHHH-HcCCCHHHHHHHHHHcC--------CCHHHHHHHHHH
Confidence 577774 89999999988877542 356677777764
No 20
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=59.36 E-value=17 Score=24.34 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=28.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhcCcceeeeccccchhHHHHHHHHH
Q 035716 202 IPKLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLE 247 (308)
Q Consensus 202 ~~~v~~L~~lG~s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~~ 247 (308)
...++-|.+|||+++++.+.+..+ ..++..-++||...
T Consensus 10 ~~~I~~L~~MGF~~~~a~~AL~~~--------~~nve~A~e~L~~~ 47 (63)
T 1wji_A 10 EKALKHITEMGFSKEASRQALMDN--------GNNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHT--------TSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHHC
Confidence 356788889999999988777766 13577778888763
No 21
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=57.34 E-value=14 Score=25.65 Aligned_cols=39 Identities=10% Similarity=0.264 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHhcCcceeeeccccchhHHHHHHHH
Q 035716 200 TLIPKLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNL 246 (308)
Q Consensus 200 ~l~~~v~~L~~lG~s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~ 246 (308)
....+|+-|.+|||+++++...++.+ ..++..-++||..
T Consensus 28 ~~ee~I~~L~eMGF~r~~a~~AL~~~--------~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 28 ASEEQIQKLVAMGFDRTQVEVALAAA--------DDDLTVAVEILMS 66 (73)
T ss_dssp CCHHHHHHHHTTTCCHHHHHHHHHHH--------TSCHHHHHHHHHT
T ss_pred ccHHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHH
Confidence 35678899999999999998888764 2357777888874
No 22
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=56.38 E-value=17 Score=23.57 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=24.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhcCcceeeeccccchhHHHHHHHHHhCCC
Q 035716 202 IPKLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEIKGK 251 (308)
Q Consensus 202 ~~~v~~L~~lG~s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~~mg~~ 251 (308)
++.++-|.++||+++-+...+.+- . .+.|.+.++||.+ |+.+
T Consensus 10 ~qmlq~L~eMGFd~erae~Alk~T------g-~~Gle~AmewL~k-~~~~ 51 (54)
T 2cos_A 10 RQMLQELVNAGCDQEMAGRALKQT------G-SRSIEAALEYISK-MSGP 51 (54)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH------T-SCCHHHHHHHHHH-HSCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh------C-cccHHHHHHHHHH-hcCC
Confidence 344666677777776655444432 1 1357777777775 6543
No 23
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.30 E-value=22 Score=23.63 Aligned_cols=40 Identities=20% Similarity=0.314 Sum_probs=30.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhcCcceeeeccccchhHHHHHHHHHhC
Q 035716 202 IPKLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEIK 249 (308)
Q Consensus 202 ~~~v~~L~~lG~s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~~mg 249 (308)
...++-|.+|||+++++.+.++.+- .++..-++||...+.
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~t~--------~nve~A~e~L~~~~~ 49 (63)
T 2dak_A 10 EDCVTTIVSMGFSRDQALKALRATN--------NSLERAVDWIFSHID 49 (63)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT--------SCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHHhCCC
Confidence 4568888899999999988888762 257788899887543
No 24
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=55.58 E-value=13 Score=21.96 Aligned_cols=24 Identities=29% Similarity=0.270 Sum_probs=19.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhcC
Q 035716 202 IPKLKYLESIGFSKDEAVLMVLRC 225 (308)
Q Consensus 202 ~~~v~~L~~lG~s~~~i~~~l~~~ 225 (308)
...++-|.++||++++..+.+..+
T Consensus 5 ~~~i~~L~~mGf~~~~a~~AL~~~ 28 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQALDAA 28 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc
Confidence 457888889999999888776655
No 25
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=50.89 E-value=28 Score=23.98 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=27.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhcCcceeeeccccchhHHHHHHHH
Q 035716 202 IPKLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNL 246 (308)
Q Consensus 202 ~~~v~~L~~lG~s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~ 246 (308)
..+++-|.+|||+++++.+.++.+- .++..-++||..
T Consensus 30 ~~~v~~L~~MGF~~~~a~~AL~~t~--------~nve~Ave~L~~ 66 (73)
T 1wiv_A 30 QSSVDTLLSFGFAEDVARKALKASG--------GDIEKATDWVFN 66 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT--------SCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC--------CCHHHHHHHHHh
Confidence 4567888899999999888777652 256677788875
No 26
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=49.54 E-value=13 Score=23.90 Aligned_cols=26 Identities=15% Similarity=0.429 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHcCC-CHHHHHHHHhc
Q 035716 199 NTLIPKLKYLESIGF-SKDEAVLMVLR 224 (308)
Q Consensus 199 ~~l~~~v~~L~~lG~-s~~~i~~~l~~ 224 (308)
.....+++-|.+||| +++.+.+.+..
T Consensus 10 ~~~~~~l~~L~~MGF~~~~~~~~AL~~ 36 (52)
T 2jy5_A 10 VRFQQQLEQLSAMGFLNREANLQALIA 36 (52)
T ss_dssp TTTHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 445677888888888 66665555544
No 27
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=49.19 E-value=24 Score=23.64 Aligned_cols=39 Identities=10% Similarity=0.179 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhcCcceeeeccccchhHHHHHHHHHh
Q 035716 202 IPKLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEI 248 (308)
Q Consensus 202 ~~~v~~L~~lG~s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~~m 248 (308)
...|+-|.+|||+.++..+.+++.. .++.+-++||...+
T Consensus 20 ~e~V~~LvsMGFs~~qA~kALKat~--------~NvErAaDWLFSH~ 58 (63)
T 1wgn_A 20 RQCVETVVNMGYSYECVLRAMKKKG--------ENIEQILDYLFAHS 58 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC--------SCHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHHhCC
Confidence 4568889999999999998888762 47888888887654
No 28
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=49.13 E-value=7.1 Score=27.08 Aligned_cols=47 Identities=17% Similarity=0.147 Sum_probs=26.2
Q ss_pred HHHHHhhcCCCh------hhhhhhCCCcccCCccC-HHHHHHHHHhCCCCCCChhhhh
Q 035716 65 KILCLEIMGVDS------GKALSLNPSLHSASLNS-IEGIISFLQSKGILQKDLPRIF 115 (308)
Q Consensus 65 ~l~~L~~~G~~~------~~il~~~P~lL~~s~~~-l~~~v~~L~~lGls~~~i~~li 115 (308)
+++|+.++|++. +....++. .+.+. ..=.-+.|+++|+...||.+++
T Consensus 5 Wf~FFl~aGv~~~~c~rYA~~F~~~r----i~e~mL~Dl~~~~Lr~LGi~eGDIIrVm 58 (72)
T 3idw_A 5 WFEFFLNCGVDVSNCQRYTINFDREQ----LTEDMMPDINNSMLRTLGLREGDIVRVM 58 (72)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTT----CCGGGGGGCCHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHcc----CCHHHHhhCCHHHHHHcCCchhhHHHHH
Confidence 468999999986 23333331 22221 1112357888888765555544
No 29
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.45 E-value=15 Score=22.90 Aligned_cols=35 Identities=23% Similarity=0.444 Sum_probs=26.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhcCcceeeeccccchhHHHHHHH
Q 035716 202 IPKLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFN 245 (308)
Q Consensus 202 ~~~v~~L~~lG~s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~ 245 (308)
...++-|.+|||+++++.+.+..+ . ++..-++||.
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~~-~--------n~e~A~~~L~ 44 (47)
T 2ekk_A 10 QQQLQQLMDMGFTREHAMEALLNT-S--------TMEQATEYLL 44 (47)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHS-C--------SHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc-C--------CHHHHHHHHH
Confidence 456788889999999998888776 1 3555666665
No 30
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.69 E-value=40 Score=23.88 Aligned_cols=40 Identities=15% Similarity=0.226 Sum_probs=30.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhcCcceeeeccccchhHHHHHHHHHhC
Q 035716 202 IPKLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEIK 249 (308)
Q Consensus 202 ~~~v~~L~~lG~s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~~mg 249 (308)
...++-|.+|||+++++.+.+..+ ..++..-++||.+.++
T Consensus 30 e~~i~~L~~MGF~~~~a~~AL~~t--------~~nve~A~ewL~~~~~ 69 (83)
T 2dai_A 30 EAALRQLTEMGFPENRATKALQLN--------HMSVPQAMEWLIEHAE 69 (83)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT--------TSCHHHHHHHHHHGGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHHCCC
Confidence 346788889999999988887765 1367788999987554
No 31
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=44.24 E-value=18 Score=23.30 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=20.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhcC
Q 035716 201 LIPKLKYLESIGFSKDEAVLMVLRC 225 (308)
Q Consensus 201 l~~~v~~L~~lG~s~~~i~~~l~~~ 225 (308)
+...++-|.++||+++++.+.+...
T Consensus 11 ~~~~Ia~Lm~mGFsr~~ai~AL~~a 35 (52)
T 2ooa_A 11 VDAKIAKLMGEGYAFEEVKRALEIA 35 (52)
T ss_dssp CHHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 4567888999999999998877643
No 32
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=43.81 E-value=24 Score=22.85 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=20.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhcC
Q 035716 201 LIPKLKYLESIGFSKDEAVLMVLRC 225 (308)
Q Consensus 201 l~~~v~~L~~lG~s~~~i~~~l~~~ 225 (308)
....++-|.++||+++++.+.+...
T Consensus 9 ~e~~I~~L~~lGF~r~~ai~AL~~a 33 (53)
T 2d9s_A 9 LSSEIERLMSQGYSYQDIQKALVIA 33 (53)
T ss_dssp SHHHHHHHHHHTCCHHHHHHHHHHT
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 4566889999999999998877654
No 33
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=42.47 E-value=27 Score=21.87 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHhc
Q 035716 200 TLIPKLKYLESIGFSKDEAVLMVLR 224 (308)
Q Consensus 200 ~l~~~v~~L~~lG~s~~~i~~~l~~ 224 (308)
.+...+.-|.++||+.+++.+.+..
T Consensus 3 ~~e~~I~~L~s~Gf~~~~~~rAL~i 27 (46)
T 2oo9_A 3 QLSSEIENLMSQGYSYQDIQKALVI 27 (46)
T ss_dssp HHHHHHHHHHHTTBCHHHHHHHHHH
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3667888899999999998876643
No 34
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=39.54 E-value=45 Score=21.88 Aligned_cols=41 Identities=20% Similarity=0.232 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHHHcCCC-HHHHHHHHhcCcceeeeccccchhHHHHHHHH
Q 035716 198 ENTLIPKLKYLESIGFS-KDEAVLMVLRCPGLFTFSIENNFKPKFEYFNL 246 (308)
Q Consensus 198 ~~~l~~~v~~L~~lG~s-~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~ 246 (308)
+...+.+++-|.+|||+ ++.+.+.+... - .++..-++||..
T Consensus 14 e~~~~~qi~~L~~MGF~d~~~~~~AL~~~-------~-gnve~Ave~L~~ 55 (58)
T 1wr1_B 14 EERYEHQLRQLNDMGFFDFDRNVAALRRS-------G-GSVQGALDSLLN 55 (58)
T ss_dssp HHHTHHHHHHHHHHTCCCHHHHHHHHHHH-------T-SCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHh-------C-CCHHHHHHHHHh
Confidence 44566677777777775 44434444322 1 345555666653
No 35
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=37.90 E-value=12 Score=23.49 Aligned_cols=23 Identities=17% Similarity=0.522 Sum_probs=18.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHhcC
Q 035716 203 PKLKYLESIGFSKDEAVLMVLRC 225 (308)
Q Consensus 203 ~~v~~L~~lG~s~~~i~~~l~~~ 225 (308)
..|+-|.+|||++..+.+.+..|
T Consensus 6 eaI~rL~~mGF~~~~a~~Al~a~ 28 (47)
T 1dv0_A 6 EAIERLKALGFPESLVIQAYFAC 28 (47)
T ss_dssp HHHTTTTTTTCCHHHHHHHHTTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHc
Confidence 45677788999999988777666
No 36
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=35.88 E-value=55 Score=22.23 Aligned_cols=19 Identities=21% Similarity=0.447 Sum_probs=10.3
Q ss_pred hhhHHHHHHHHHHcCCCHH
Q 035716 198 ENTLIPKLKYLESIGFSKD 216 (308)
Q Consensus 198 ~~~l~~~v~~L~~lG~s~~ 216 (308)
+..+...++-|.+|||..+
T Consensus 16 e~~y~~ql~qL~~MGF~d~ 34 (67)
T 2dna_A 16 EVRFSKEMECLQAMGFVNY 34 (67)
T ss_dssp HHHTHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHcCCCcH
Confidence 3345555666666665443
No 37
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=35.82 E-value=53 Score=22.73 Aligned_cols=41 Identities=17% Similarity=0.307 Sum_probs=23.9
Q ss_pred hhhHHHHHHHHHHcCCC-HHHHHHHHhcCcceeeeccccchhHHHHHHHH
Q 035716 198 ENTLIPKLKYLESIGFS-KDEAVLMVLRCPGLFTFSIENNFKPKFEYFNL 246 (308)
Q Consensus 198 ~~~l~~~v~~L~~lG~s-~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~ 246 (308)
+.....+++-|.+|||+ ++.+.+.+... - .++..-++||..
T Consensus 26 e~~ye~qi~qL~eMGF~dr~~~~~AL~~t-------~-Gnve~Ave~L~~ 67 (74)
T 1vej_A 26 EGRYQQELEELKALGFANRDANLQALVAT-------D-GDIHAAIEMLLG 67 (74)
T ss_dssp TTTSHHHHHHHHHHTCCCHHHHHHHHHHT-------T-SCHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHHh-------C-CCHHHHHHHHHh
Confidence 34466677777778874 45544444432 1 356666677663
No 38
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=34.03 E-value=32 Score=21.34 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHcCCCH-HHHHHHHh
Q 035716 199 NTLIPKLKYLESIGFSK-DEAVLMVL 223 (308)
Q Consensus 199 ~~l~~~v~~L~~lG~s~-~~i~~~l~ 223 (308)
.....+++-|.+|||+. +.+.+.+.
T Consensus 5 ~~~~~~i~~L~~MGF~d~~~~~~AL~ 30 (46)
T 2bwb_A 5 ERYEHQLRQLNDMGFFDFDRNVAALR 30 (46)
T ss_dssp HHTHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 34566777778888753 33444443
No 39
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=33.90 E-value=44 Score=21.76 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHhcCcceeeeccccchhHHHHHHHH
Q 035716 200 TLIPKLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNL 246 (308)
Q Consensus 200 ~l~~~v~~L~~lG~s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~ 246 (308)
.....+.-|.++||+++++.+.+... - +++.--.++|.+
T Consensus 6 p~e~~Ia~L~smGfsr~da~~AL~ia-------~-Ndv~~AtNiLlE 44 (56)
T 2juj_A 6 QLSSEIENLMSQGYSYQDIQKALVIA-------Q-NNIEMAKNILRE 44 (56)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHT-------T-TCSHHHHHHHHH
T ss_pred CChHHHHHHHHcCCCHHHHHHHHHHh-------c-ccHHHHHHHHHH
Confidence 35667888999999999988766533 2 245555555553
No 40
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.59 E-value=30 Score=23.89 Aligned_cols=41 Identities=12% Similarity=0.153 Sum_probs=31.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhcCcceeeeccccchhHHHHHHHHHhC
Q 035716 202 IPKLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEIK 249 (308)
Q Consensus 202 ~~~v~~L~~lG~s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~~mg 249 (308)
...++-|.+|||+++++.+.++.+-. ..+..-++||.+.+.
T Consensus 10 e~~v~~L~~MGF~~~~a~~AL~~t~n-------~~ve~A~ewL~~~~~ 50 (74)
T 2dag_A 10 ESVIIQLVEMGFPMDACRKAVYYTGN-------SGAEAAMNWVMSHMD 50 (74)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHTS-------CCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC-------CCHHHHHHHHHhCCC
Confidence 35678888999999999888876521 258888999998654
No 41
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=31.84 E-value=37 Score=22.69 Aligned_cols=38 Identities=18% Similarity=0.307 Sum_probs=29.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHhcCcceeeeccccchhHHHHHHHHH
Q 035716 203 PKLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLE 247 (308)
Q Consensus 203 ~~v~~L~~lG~s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~~ 247 (308)
..++-|.+|||+++++.+.+..+-. +++..-++||.+.
T Consensus 21 ~~i~~L~~MGF~~~~a~~AL~~t~~-------~nve~A~ewL~~~ 58 (64)
T 2cpw_A 21 SALDVLLSMGFPRARAQKALASTGG-------RSVQTACDWLFSH 58 (64)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTTT-------SCHHHHHHHHHSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCC-------CCHHHHHHHHHhC
Confidence 3577888999999999888876532 2677888888753
No 42
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=28.01 E-value=46 Score=24.68 Aligned_cols=39 Identities=23% Similarity=0.363 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHc-CCCHHHHHHHHhcCcceeeeccccchhHHHHHHHH
Q 035716 200 TLIPKLKYLESI-GFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNL 246 (308)
Q Consensus 200 ~l~~~v~~L~~l-G~s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~ 246 (308)
.+..+|+.|.++ ||+++++...+..| + ..+..-+++|.+
T Consensus 38 d~eekVk~L~EmtG~seeeAr~AL~~~------n--gDl~~AI~~Lle 77 (104)
T 1wj7_A 38 DFEEKVKQLIDITGKNQDECVIALHDC------N--GDVNRAINVLLE 77 (104)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHH------T--SCHHHHHHHHHT
T ss_pred cHHHHHHHHHHhhCCCHHHHHHHHHHc------C--CCHHHHHHHHHh
Confidence 478899999888 99999998887766 2 357777777775
No 43
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=27.47 E-value=29 Score=22.42 Aligned_cols=39 Identities=18% Similarity=0.269 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHcCCCHHH-HHHHHhcCcceeeeccccchhHHHHHHHH
Q 035716 200 TLIPKLKYLESIGFSKDE-AVLMVLRCPGLFTFSIENNFKPKFEYFNL 246 (308)
Q Consensus 200 ~l~~~v~~L~~lG~s~~~-i~~~l~~~P~iL~~s~e~~l~~k~~fL~~ 246 (308)
....+++-|.+|||+.++ ..+.+..+ - .++..-+++|..
T Consensus 8 ~~~~~l~~L~~MGF~d~~~n~~AL~~~-------~-Gdv~~Ave~L~~ 47 (54)
T 2dah_A 8 HFQVQLEQLRSMGFLNREANLQALIAT-------G-GDVDAAVEKLRQ 47 (54)
T ss_dssp SSHHHHHHHHHHTCCCHHHHHHHHHHH-------T-SCHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCcHHHHHHHHHHc-------C-CCHHHHHHHHHh
Confidence 345677777788886654 34444322 1 356666666664
No 44
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=26.43 E-value=40 Score=22.46 Aligned_cols=39 Identities=13% Similarity=0.222 Sum_probs=29.6
Q ss_pred HHHHHHHcCCCHHHHHHHHhcCcceeeeccccchhHHHHHHHHHhC
Q 035716 204 KLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEIK 249 (308)
Q Consensus 204 ~v~~L~~lG~s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~~mg 249 (308)
.++-|.+|||+++++.+.++.+- + .++..-++||...+.
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~t~-----~--~nve~A~ewLl~~~~ 50 (64)
T 1whc_A 12 ALESLIEMGFPRGRAEKALALTG-----N--QGIEAAMDWLMEHED 50 (64)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHT-----S--CCHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHhc-----C--CCHHHHHHHHHhCCC
Confidence 57778899999999988877431 1 368888999987554
No 45
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.00 E-value=77 Score=20.51 Aligned_cols=19 Identities=16% Similarity=0.266 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHcCCCHHH
Q 035716 199 NTLIPKLKYLESIGFSKDE 217 (308)
Q Consensus 199 ~~l~~~v~~L~~lG~s~~~ 217 (308)
+.-.++++-|.+|||...+
T Consensus 7 e~~a~~L~~L~eMGF~D~~ 25 (54)
T 2cp8_A 7 GQTAALMAHLFEMGFCDRQ 25 (54)
T ss_dssp TTHHHHHHHHHHHTCCCHH
T ss_pred HhhHHHHHHHHHcCCCcHH
Confidence 3445566666777774433
No 46
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=25.85 E-value=59 Score=23.08 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=29.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhcCcceeeeccccchhHHHHHHHHH
Q 035716 202 IPKLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLE 247 (308)
Q Consensus 202 ~~~v~~L~~lG~s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~~ 247 (308)
.+.++-|.+|||+++++.+.+..+ ...+..-++||...
T Consensus 22 ~~~I~qL~~MGF~~~~a~~AL~~~--------n~n~e~A~ewL~~h 59 (85)
T 2dkl_A 22 SRLIKQLTDMGFPREPAEEALKSN--------NMNLDQAMSALLEK 59 (85)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT--------TSCHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHHC
Confidence 567888999999999988777433 13688889999863
No 47
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=23.19 E-value=63 Score=22.92 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=19.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhc
Q 035716 202 IPKLKYLESIGFSKDEAVLMVLR 224 (308)
Q Consensus 202 ~~~v~~L~~lG~s~~~i~~~l~~ 224 (308)
-..+..++.+|||-++|..++..
T Consensus 6 L~~I~~lr~lGfsL~eIk~~l~~ 28 (99)
T 1q08_A 6 LKFIRHARQLGFSLESIRELLSI 28 (99)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHH
Confidence 45677888999999999999853
No 48
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=22.54 E-value=54 Score=21.89 Aligned_cols=39 Identities=13% Similarity=0.176 Sum_probs=29.7
Q ss_pred HHHHHHHcCCCHHHHHHHHhcCcceeeeccccchhHHHHHHHHHhC
Q 035716 204 KLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEIK 249 (308)
Q Consensus 204 ~v~~L~~lG~s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~~mg 249 (308)
.++-|.+|||+++.+.+.+..+-. +.+..-++||.+.+.
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~t~n-------~~~e~A~~wL~~h~~ 50 (64)
T 2crn_A 12 LLEPLLAMGFPVHTALKALAATGR-------KTAEEALAWLHDHCN 50 (64)
T ss_dssp SHHHHHHTSCCHHHHHHHHHHHTS-------CCHHHHHHHHHHHSS
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCC-------CCHHHHHHHHHhCCC
Confidence 467788999999998887775411 268889999997654
No 49
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=22.22 E-value=76 Score=22.38 Aligned_cols=41 Identities=12% Similarity=0.167 Sum_probs=30.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhcCcceeeeccccchhHHHHHHHHHhC
Q 035716 202 IPKLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEIK 249 (308)
Q Consensus 202 ~~~v~~L~~lG~s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~~mg 249 (308)
...++-|.+|||+++.+.+.+... -..++..-++||...+.
T Consensus 30 e~~v~~L~~MGF~~~~a~~AL~~t-------~n~n~e~A~ewL~~h~~ 70 (84)
T 1vek_A 30 EEIVAQLVSMGFSQLHCQKAAINT-------SNAGVEEAMNWLLSHMD 70 (84)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT-------TTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH-------cCCCHHHHHHHHHhCCC
Confidence 356788889999999988777644 11368888999997554
No 50
>2c35_A Human RPB4, DNA-directed RNA polymerase II 16 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: a.60.8.2
Probab=21.17 E-value=33 Score=27.25 Aligned_cols=31 Identities=23% Similarity=0.463 Sum_probs=21.0
Q ss_pred CccCHHHHHHHHHhCCCCCCChhhhhhcCCc
Q 035716 90 SLNSIEGIISFLQSKGILQKDLPRIFGMCPK 120 (308)
Q Consensus 90 s~~~l~~~v~~L~~lGls~~~i~~li~~~P~ 120 (308)
+.+.++..++.|..+|+++.++..++.-+|.
T Consensus 86 ~~e~~~~l~e~L~~~~L~~~E~a~L~NL~P~ 116 (152)
T 2c35_A 86 NRETIASVRSLLLQKKLHKFELACLANLCPE 116 (152)
T ss_dssp SHHHHHHHHHHHHTSSCCHHHHHHHHHHCCS
T ss_pred CHHHHHHHHHHHHhcCCCHHHHHHhccCCCC
Confidence 5556666666677777777777777766664
No 51
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=20.24 E-value=2e+02 Score=24.55 Aligned_cols=24 Identities=4% Similarity=-0.121 Sum_probs=17.9
Q ss_pred HHHHcCC-CCCchhhcccCHHHHHH
Q 035716 276 QALRNGA-RLSLPVMLKTSDEEFNE 299 (308)
Q Consensus 276 ~L~~~G~-~~~l~~il~~sd~~F~~ 299 (308)
+++..|+ ++++.++++.+-+++..
T Consensus 100 ~l~~~gv~DFtl~DL~kP~~~Rt~~ 124 (250)
T 2ve7_C 100 FLPICRVNDFETADILCPKAKRTSR 124 (250)
T ss_dssp HHHHTTCCCCCHHHHHSCCHHHHHH
T ss_pred HHHHcCCCCCcHhHhcCCchHHHHH
Confidence 5667887 68888888888777654
No 52
>3ayh_A DNA-directed RNA polymerase III subunit RPC9; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=20.23 E-value=22 Score=27.68 Aligned_cols=28 Identities=11% Similarity=0.338 Sum_probs=14.0
Q ss_pred chhHHHHHhhhhcCCCcchHHHHHhhcCc
Q 035716 129 DLEPVFNFLSHDLEVPEHDFRKVINKCPR 157 (308)
Q Consensus 129 ~l~~~l~fL~~~~G~~~~~i~~li~~~P~ 157 (308)
.+...++.|+ .+|+++.++..++.-+|.
T Consensus 76 ~i~~l~~~L~-~~~Ltk~E~LqivNl~P~ 103 (136)
T 3ayh_A 76 RFLDCIAIFN-EFELTKAEILVILNNKPS 103 (136)
T ss_dssp HHHHHHHTTT-TTCCCHHHHHHHHHHCCC
T ss_pred HHHHHHHHHH-hcCCCHHHHHHHhccCCC
Confidence 3444555553 455555555555555553
No 53
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=20.10 E-value=1.1e+02 Score=20.24 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=20.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhcC
Q 035716 201 LIPKLKYLESIGFSKDEAVLMVLRC 225 (308)
Q Consensus 201 l~~~v~~L~~lG~s~~~i~~~l~~~ 225 (308)
...-++-|..+|+++.|+.+++.+.
T Consensus 17 ~~ea~~AL~aLGY~~~ea~kav~~v 41 (62)
T 1ixs_A 17 AEEAVMALAALGFKEAQARAVVLDL 41 (62)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4567888999999999999888764
No 54
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=20.00 E-value=1.1e+02 Score=19.99 Aligned_cols=22 Identities=14% Similarity=0.157 Sum_probs=16.4
Q ss_pred HHHHHH---HHcCCCHHHHHHHHhc
Q 035716 203 PKLKYL---ESIGFSKDEAVLMVLR 224 (308)
Q Consensus 203 ~~v~~L---~~lG~s~~~i~~~l~~ 224 (308)
.++.++ +++|++.+||..++..
T Consensus 14 ewl~LI~~Ak~lGlsleEIrefL~l 38 (57)
T 1b0n_B 14 EWVELMVEAKEANISPEEIRKYLLL 38 (57)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 345555 4799999999988863
Done!