Query 035716
Match_columns 308
No_of_seqs 221 out of 1306
Neff 8.0
Searched_HMMs 13730
Date Mon Mar 25 09:13:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035716.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035716hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oqya1 a.5.2.1 (A:160-200) DN 74.3 1.4 0.0001 25.7 3.1 26 200-225 3-28 (41)
2 d1vg5a_ a.5.2.1 (A:) Rhomboid 63.8 3.3 0.00024 27.2 3.6 38 202-247 30-67 (73)
3 d1wgna_ a.5.2.1 (A:) Ubiquitin 58.9 5.9 0.00043 25.1 4.0 38 202-247 20-57 (63)
4 d2g3qa1 a.5.2.1 (A:1339-1381) 58.1 3 0.00022 24.3 2.2 23 204-226 7-29 (43)
5 d1wiva_ a.5.2.1 (A:) Ubiquitin 57.1 9.2 0.00067 24.9 4.9 38 202-247 30-67 (73)
6 d1wjia_ a.5.2.1 (A:) Tudor dom 52.8 14 0.00099 23.2 5.1 40 202-249 10-49 (63)
7 d1oqya2 a.5.2.1 (A:317-360) DN 30.9 18 0.0013 21.0 2.6 24 202-225 5-28 (44)
8 d1ttea1 a.5.2.1 (A:161-215) Ub 30.6 23 0.0017 21.5 3.2 23 203-225 11-33 (55)
9 d2cpwa1 a.5.2.1 (A:8-58) Cbl-i 28.4 21 0.0015 21.3 2.8 35 204-245 15-49 (51)
10 d1whca_ a.5.2.1 (A:) UBA/UBX 3 27.4 40 0.0029 20.9 4.2 39 204-249 12-50 (64)
11 d2daha1 a.5.2.1 (A:8-48) Ubiqu 25.9 12 0.00087 21.5 1.1 11 171-181 6-16 (41)
12 d1k6ya1 a.4.10.1 (A:1-46) N-te 25.4 22 0.0016 20.8 2.4 26 203-228 17-43 (46)
13 d1cuka1 a.5.1.1 (A:156-203) DN 25.2 35 0.0026 19.9 3.3 26 200-225 4-29 (48)
14 d1pbya1 a.3.1.7 (A:1-85) Quino 22.6 52 0.0038 21.5 4.3 33 39-76 38-71 (85)
15 d2crna1 a.5.2.1 (A:8-58) Suppr 21.7 35 0.0025 20.2 2.8 38 205-249 6-43 (51)
16 d2r1jl1 a.35.1.2 (L:3-68) P22 21.6 28 0.002 21.2 2.5 56 201-256 4-63 (66)
17 d2dnaa1 a.5.2.1 (A:12-61) Ubiq 21.0 17 0.0012 21.8 1.1 40 164-208 5-44 (50)
18 d1zcza1 c.24.1.3 (A:1-157) IMP 20.9 22 0.0016 26.5 2.2 36 97-134 34-69 (157)
19 d1rw1a_ c.47.1.12 (A:) Hypothe 20.4 43 0.0031 22.9 3.6 23 211-233 71-93 (114)
20 d1uxda_ a.35.1.5 (A:) Fructose 20.1 70 0.0051 19.3 4.2 41 140-181 9-49 (59)
No 1
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=74.26 E-value=1.4 Score=25.65 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHhcC
Q 035716 200 TLIPKLKYLESIGFSKDEAVLMVLRC 225 (308)
Q Consensus 200 ~l~~~v~~L~~lG~s~~~i~~~l~~~ 225 (308)
..+.++.-|.+|||+++++.+.++++
T Consensus 3 ~~e~~i~~L~~MGF~~~~a~~AL~~~ 28 (41)
T d1oqya1 3 EYETMLTEIMSMGYERERVVAALRAS 28 (41)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHS
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 46788999999999999998888766
No 2
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=63.78 E-value=3.3 Score=27.19 Aligned_cols=38 Identities=11% Similarity=0.299 Sum_probs=28.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhcCcceeeeccccchhHHHHHHHHH
Q 035716 202 IPKLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLE 247 (308)
Q Consensus 202 ~~~v~~L~~lG~s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~~ 247 (308)
+..++-|.+|||++++..+.+..+ ..++..-++||...
T Consensus 30 ee~i~~L~~MGF~~~~a~~AL~~~--------~~n~e~A~~~Ll~~ 67 (73)
T d1vg5a_ 30 EEQIQKLVAMGFDRTQVEVALAAA--------DDDLTVAVEILMSQ 67 (73)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHH--------TSCHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHh--------CCCHHHHHHHHHhC
Confidence 457888889999998888777665 24677888888753
No 3
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.86 E-value=5.9 Score=25.10 Aligned_cols=38 Identities=11% Similarity=0.206 Sum_probs=29.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhcCcceeeeccccchhHHHHHHHHH
Q 035716 202 IPKLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLE 247 (308)
Q Consensus 202 ~~~v~~L~~lG~s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~~ 247 (308)
+..|+-|.+|||+++++.+.+..+ ..++..-++||...
T Consensus 20 e~~v~~L~~MGF~~~~a~~AL~~~--------~~n~e~A~~~Lls~ 57 (63)
T d1wgna_ 20 RQCVETVVNMGYSYECVLRAMKKK--------GENIEQILDYLFAH 57 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH--------CSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHhC
Confidence 467888999999999988887765 23678888888763
No 4
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=58.15 E-value=3 Score=24.27 Aligned_cols=23 Identities=26% Similarity=0.560 Sum_probs=19.3
Q ss_pred HHHHHHHcCCCHHHHHHHHhcCc
Q 035716 204 KLKYLESIGFSKDEAVLMVLRCP 226 (308)
Q Consensus 204 ~v~~L~~lG~s~~~i~~~l~~~P 226 (308)
.++-|.+|||++++..+.+.++-
T Consensus 7 ai~eL~~MGF~e~~A~~AL~k~~ 29 (43)
T d2g3qa1 7 AVEELSGMGFTEEEAHNALEKCN 29 (43)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHcC
Confidence 46677899999999999988873
No 5
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=57.10 E-value=9.2 Score=24.85 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=30.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhcCcceeeeccccchhHHHHHHHHH
Q 035716 202 IPKLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLE 247 (308)
Q Consensus 202 ~~~v~~L~~lG~s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~~ 247 (308)
...+.-|.+|||+++++.+.++.+ .+++..-++||...
T Consensus 30 ~~~i~~L~~MGF~~~~a~~AL~~~--------~~n~e~Av~~Lls~ 67 (73)
T d1wiva_ 30 QSSVDTLLSFGFAEDVARKALKAS--------GGDIEKATDWVFNN 67 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT--------TSCHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHc--------CCCHHHHHHHHHcC
Confidence 456888889999999998888877 24678888888763
No 6
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.79 E-value=14 Score=23.17 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=30.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhcCcceeeeccccchhHHHHHHHHHhC
Q 035716 202 IPKLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEIK 249 (308)
Q Consensus 202 ~~~v~~L~~lG~s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~~mg 249 (308)
...++-|.+|||+++...+.+..+ .+.+..-++||.+.+.
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~~--------~~~~e~A~~wL~~~~~ 49 (63)
T d1wjia_ 10 EKALKHITEMGFSKEASRQALMDN--------GNNLEAALNVLLTSNK 49 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHT--------TSCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHHCCC
Confidence 356788889999999988877766 1368888999987543
No 7
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.87 E-value=18 Score=20.97 Aligned_cols=24 Identities=17% Similarity=0.472 Sum_probs=18.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhcC
Q 035716 202 IPKLKYLESIGFSKDEAVLMVLRC 225 (308)
Q Consensus 202 ~~~v~~L~~lG~s~~~i~~~l~~~ 225 (308)
+..++-|..+||+++.+.+....|
T Consensus 5 ~~aIeRL~~LGF~r~~viqay~AC 28 (44)
T d1oqya2 5 KEAIERLKALGFPESLVIQAYFAC 28 (44)
T ss_dssp HHHHHHHHHHTCCSHHHHHHTSSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 356778888999999887665544
No 8
>d1ttea1 a.5.2.1 (A:161-215) Ubiquitin-protein ligase ubc1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=30.56 E-value=23 Score=21.46 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=17.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHhcC
Q 035716 203 PKLKYLESIGFSKDEAVLMVLRC 225 (308)
Q Consensus 203 ~~v~~L~~lG~s~~~i~~~l~~~ 225 (308)
..++-+.++||+++.+...++|.
T Consensus 11 ~~V~~f~~mGF~rdKvI~VLrrl 33 (55)
T d1ttea1 11 DLIDEFESQGFEKDKIVEVLRRL 33 (55)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCchhHHHHHHHh
Confidence 45677788899988888777764
No 9
>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.44 E-value=21 Score=21.31 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=25.0
Q ss_pred HHHHHHHcCCCHHHHHHHHhcCcceeeeccccchhHHHHHHH
Q 035716 204 KLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFN 245 (308)
Q Consensus 204 ~v~~L~~lG~s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~ 245 (308)
.++-|.+|||+++...+.+... .- ..+..-++||.
T Consensus 15 ~l~~L~~MGF~~~~a~~AL~~t------~n-~~ve~A~~WLl 49 (51)
T d2cpwa1 15 ALDVLLSMGFPRARAQKALAST------GG-RSVQTACDWLF 49 (51)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHT------TT-SCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHH------CC-CCHHHHHHHHH
Confidence 3677889999999988777643 11 25777777775
No 10
>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.41 E-value=40 Score=20.93 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=28.7
Q ss_pred HHHHHHHcCCCHHHHHHHHhcCcceeeeccccchhHHHHHHHHHhC
Q 035716 204 KLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEIK 249 (308)
Q Consensus 204 ~v~~L~~lG~s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~~mg 249 (308)
.++-|.+|||+++...+.+... -+ ..+..-++||...+.
T Consensus 12 ~l~~L~~MGF~~~~a~~AL~~t-----~n--~~~e~A~~Wl~~h~~ 50 (64)
T d1whca_ 12 ALESLIEMGFPRGRAEKALALT-----GN--QGIEAAMDWLMEHED 50 (64)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHH-----TS--CCHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHh-----CC--CCHHHHHHHHHHCCC
Confidence 4677889999999887776533 11 258889999998665
No 11
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.90 E-value=12 Score=21.45 Aligned_cols=11 Identities=36% Similarity=0.612 Sum_probs=5.1
Q ss_pred HHHHHHcCCCC
Q 035716 171 LFYLQRLGFKD 181 (308)
Q Consensus 171 v~~L~~lG~~~ 181 (308)
++.|+++||.+
T Consensus 6 L~~L~~MGF~d 16 (41)
T d2daha1 6 LEQLRSMGFLN 16 (41)
T ss_dssp HHHHHHHTCCC
T ss_pred HHHHHHcCCCC
Confidence 44444455444
No 12
>d1k6ya1 a.4.10.1 (A:1-46) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=25.44 E-value=22 Score=20.79 Aligned_cols=26 Identities=12% Similarity=0.175 Sum_probs=21.2
Q ss_pred HHHHHH-HHcCCCHHHHHHHHhcCcce
Q 035716 203 PKLKYL-ESIGFSKDEAVLMVLRCPGL 228 (308)
Q Consensus 203 ~~v~~L-~~lG~s~~~i~~~l~~~P~i 228 (308)
.+...| ..+|++....+.||..||..
T Consensus 17 ~n~~~L~~~F~ip~~vAr~IV~~C~~C 43 (46)
T d1k6ya1 17 SNWRAMASDFNLPPVVAKEIVASCDKC 43 (46)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHCTTC
T ss_pred cCHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 345677 47999999999999999964
No 13
>d1cuka1 a.5.1.1 (A:156-203) DNA helicase RuvA subunit, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=25.17 E-value=35 Score=19.95 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHhcC
Q 035716 200 TLIPKLKYLESIGFSKDEAVLMVLRC 225 (308)
Q Consensus 200 ~l~~~v~~L~~lG~s~~~i~~~l~~~ 225 (308)
....-+.-|..+|++..|..+++.+-
T Consensus 4 ~~~eAi~AL~~LGY~~~ea~~av~~i 29 (48)
T d1cuka1 4 AEQEAVARLVALGYKPQEASRMVSKI 29 (48)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 35667888999999999999999765
No 14
>d1pbya1 a.3.1.7 (A:1-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Paracoccus denitrificans [TaxId: 266]}
Probab=22.57 E-value=52 Score=21.55 Aligned_cols=33 Identities=12% Similarity=0.084 Sum_probs=23.1
Q ss_pred ccchhhhhhCCCCCCCCCChhhhHHHHHHHHhh-cCCCh
Q 035716 39 TKPKSLLQNHPLYPPTQANLSFQIKEKILCLEI-MGVDS 76 (308)
Q Consensus 39 ~~~~~l~~~~P~~~~~~~d~~~~~~~~l~~L~~-~G~~~ 76 (308)
..|.+.+..+.+-.. .++....++||.. .|+.+
T Consensus 38 ~~V~~M~~~~Ga~l~-----~~e~~~Iv~YLa~~yG~~p 71 (85)
T d1pbya1 38 MTVTRMMRNHGVALE-----PEERAAIVRHLSDTRGLSL 71 (85)
T ss_dssp HHHHHHHHHSCCCCC-----HHHHHHHHHHHHHHSCCCS
T ss_pred HHHHHHHHHcCCCCC-----HHHHHHHHHHHHHHcCCCc
Confidence 566777777765444 3567788888887 78765
No 15
>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.72 E-value=35 Score=20.20 Aligned_cols=38 Identities=13% Similarity=0.175 Sum_probs=27.2
Q ss_pred HHHHHHcCCCHHHHHHHHhcCcceeeeccccchhHHHHHHHHHhC
Q 035716 205 LKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEIK 249 (308)
Q Consensus 205 v~~L~~lG~s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~~mg 249 (308)
++-|.+|||++....+.+... -+ ..+..-++||...+.
T Consensus 6 v~~L~~MGF~~~~a~~Al~~t-----~n--~~ve~A~~Wl~~h~~ 43 (51)
T d2crna1 6 LEPLLAMGFPVHTALKALAAT-----GR--KTAEEALAWLHDHCN 43 (51)
T ss_dssp HHHHHHTSCCHHHHHHHHHHH-----TS--CCHHHHHHHHHHHSS
T ss_pred HHHHHHcCCCHHHHHHHHHHH-----CC--CCHHHHHHHHHHcCC
Confidence 556779999999887766432 11 368888999987654
No 16
>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=21.60 E-value=28 Score=21.21 Aligned_cols=56 Identities=7% Similarity=-0.044 Sum_probs=27.7
Q ss_pred HHHHHHHH-HHcCCCHHHHHHHHhcCcceeeeccccchhHHH---HHHHHHhCCChHHHh
Q 035716 201 LIPKLKYL-ESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKF---EYFNLEIKGKLEELK 256 (308)
Q Consensus 201 l~~~v~~L-~~lG~s~~~i~~~l~~~P~iL~~s~e~~l~~k~---~fL~~~mg~~~~~l~ 256 (308)
+-.++..+ +..|++.+++++.+--.+..+..=....-.|.+ .-+.+.+|++.++|.
T Consensus 4 ig~rik~~R~~~g~tq~~lA~~~gvs~~~i~~~e~g~~~p~~~~l~~ia~~l~v~~~~Ll 63 (66)
T d2r1jl1 4 MGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLL 63 (66)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCBHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHh
Confidence 45566666 367777777776665444433211111122222 223334666666654
No 17
>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.01 E-value=17 Score=21.79 Aligned_cols=40 Identities=20% Similarity=0.252 Sum_probs=19.0
Q ss_pred hhchHHHHHHHHHcCCCCcchhhhhchhhhhcchhhhHHHHHHHH
Q 035716 164 RDQLKPALFYLQRLGFKDLNALAYQDSVLLVSKVENTLIPKLKYL 208 (308)
Q Consensus 164 ~~~l~~~v~~L~~lG~~~~~~ii~~~P~ll~~~~~~~l~~~v~~L 208 (308)
+.+..+-++-|+++|+.+...- -..|... ..++...+++|
T Consensus 5 e~ry~~QL~qL~~MGF~d~~~N----i~AL~~t-~GdV~~Aie~L 44 (50)
T d2dnaa1 5 EVRFSKEMECLQAMGFVNYNAN----LQALIAT-DGDTNAAIYKL 44 (50)
T ss_dssp HHHTHHHHHHHHHHTCCCHHHH----HHHHHHT-TSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHH----HHHHHHc-CCCHHHHHHHH
Confidence 4455555666666666553222 2223322 23455555555
No 18
>d1zcza1 c.24.1.3 (A:1-157) IMP cyclohydrolase domain of bifunctional purine biosynthesis enzyme ATIC {Thermotoga maritima [TaxId: 2336]}
Probab=20.93 E-value=22 Score=26.55 Aligned_cols=36 Identities=28% Similarity=0.416 Sum_probs=21.2
Q ss_pred HHHHHHhCCCCCCChhhhhhcCCceeeCCcccchhHHH
Q 035716 97 IISFLQSKGILQKDLPRIFGMCPKVLTANIKTDLEPVF 134 (308)
Q Consensus 97 ~v~~L~~lGls~~~i~~li~~~P~lL~~~~e~~l~~~l 134 (308)
..++|++.|++..++.+ ++.+|.+|.-.+. +|-|++
T Consensus 34 Tak~L~~~Gi~v~~Vs~-~Tg~peil~gRvK-TLhp~i 69 (157)
T d1zcza1 34 TAKFLKSNGIEANDVST-ITGFENLLGGLVK-TLHPEI 69 (157)
T ss_dssp HHHHHHHTTCCCEEGGG-GSCCCCGGGGTTT-TCCHHH
T ss_pred HHHHHHHhhhhhhHHHH-HhhHHHHHHhhhc-cchHHH
Confidence 44566666666666655 3466666665553 566653
No 19
>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=20.41 E-value=43 Score=22.94 Aligned_cols=23 Identities=13% Similarity=0.352 Sum_probs=18.9
Q ss_pred cCCCHHHHHHHHhcCcceeeecc
Q 035716 211 IGFSKDEAVLMVLRCPGLFTFSI 233 (308)
Q Consensus 211 lG~s~~~i~~~l~~~P~iL~~s~ 233 (308)
..++.+++..++..+|.++...+
T Consensus 71 ~~ls~~e~i~~i~~~P~LikRPI 93 (114)
T d1rw1a_ 71 ADLDEAKAIELMLAQPSMIKRPV 93 (114)
T ss_dssp TTCCHHHHHHHHHHCGGGBCSCE
T ss_pred ccccHHHHHHHHHhCcceEeCCE
Confidence 46889999999999999876554
No 20
>d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=20.13 E-value=70 Score=19.31 Aligned_cols=41 Identities=12% Similarity=0.102 Sum_probs=26.8
Q ss_pred hcCCCcchHHHHHhhcCccccccchhchHHHHHHHHHcCCCC
Q 035716 140 DLEVPEHDFRKVINKCPRLLTSSARDQLKPALFYLQRLGFKD 181 (308)
Q Consensus 140 ~~G~~~~~i~~li~~~P~lL~~~~~~~l~~~v~~L~~lG~~~ 181 (308)
..|++..-+.+++.-.|.-...+ ++.-+...+..+++|+.+
T Consensus 9 ~agvS~sTVSrvLn~~~~~~~vs-~~tr~rV~~~a~~lgY~p 49 (59)
T d1uxda_ 9 LAGVSRTTASYVINGKAKQYRVS-DKTVEKVMAVVREHNYHP 49 (59)
T ss_dssp HHTSCTTHHHHHHHTCGGGTTCT-TTTHHHHHHHHHHHTCCC
T ss_pred HHCcCHHHHHHHHcCCCCcCcCC-HHHHHHHHHHHHHHCCCc
Confidence 56888888888888776533334 344555556666788754
Done!