BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035717
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HFJ|A Chain A, X-ray Crystal Structure Of A Double Bond Reductase From
Nicotiana Tabacum
pdb|4HFJ|B Chain B, X-ray Crystal Structure Of A Double Bond Reductase From
Nicotiana Tabacum
pdb|4HFM|A Chain A, X-ray Crystal Structure Of A Nadp(h)-bound Double Bond
Reductase From Nicotiana Tabacum
pdb|4HFM|B Chain B, X-ray Crystal Structure Of A Nadp(h)-bound Double Bond
Reductase From Nicotiana Tabacum
pdb|4HFN|A Chain A, X-ray Crystal Structure Of A Ternary Complex Of Double
Bond Reductase From Nicotiana Tabacum
pdb|4HFN|B Chain B, X-ray Crystal Structure Of A Ternary Complex Of Double
Bond Reductase From Nicotiana Tabacum
Length = 351
Score = 191 bits (484), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 90/124 (72%), Positives = 106/124 (85%)
Query: 2 FPEGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRM 61
FP+GIDIYFENVGGKMLDAVL+NMK+ G+IAVCGMISQYNL++ +G+HNL LI K++RM
Sbjct: 220 FPDGIDIYFENVGGKMLDAVLVNMKLYGRIAVCGMISQYNLEQTEGVHNLFCLITKRIRM 279
Query: 62 EGFLVSDYNHLYPKFLEMIIPHIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAA 121
EGFLV DY HLYPK+LEM+IP IK K+VY+ED A GLESA A VGLFSGRN+GKQV
Sbjct: 280 EGFLVFDYYHLYPKYLEMVIPQIKAGKVVYVEDVAHGLESAPTALVGLFSGRNIGKQVVM 339
Query: 122 VASE 125
V+ E
Sbjct: 340 VSRE 343
>pdb|2J3H|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Apo Form
pdb|2J3H|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Apo Form
pdb|2J3I|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Binary Complex
pdb|2J3I|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Binary Complex
pdb|2J3J|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex I
pdb|2J3J|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex I
pdb|2J3K|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex Ii
pdb|2J3K|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex Ii
Length = 345
Score = 174 bits (441), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 80/125 (64%), Positives = 100/125 (80%)
Query: 1 CFPEGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVR 60
CFP GIDIYFENVGGKMLDAVL+NM + G+IAVCGMISQYNL+ +G+HNL+ +I K+ R
Sbjct: 221 CFPNGIDIYFENVGGKMLDAVLVNMNMHGRIAVCGMISQYNLENQEGVHNLSNIIYKRNR 280
Query: 61 MEGFLVSDYNHLYPKFLEMIIPHIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVA 120
++GF+VSD+ Y KFLE ++PHI+ KI Y+ED A+GLE A A VGLF G+N+GKQV
Sbjct: 281 IQGFVVSDFYDKYSKFLEFVLPHIREGKITYVEDVADGLEKAPEALVGLFHGKNVGKQVV 340
Query: 121 AVASE 125
VA E
Sbjct: 341 VVARE 345
>pdb|4B7C|A Chain A, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|B Chain B, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|C Chain C, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|D Chain D, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|E Chain E, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|F Chain F, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|G Chain G, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|H Chain H, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|I Chain I, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|J Chain J, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|K Chain K, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|L Chain L, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|A Chain A, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|B Chain B, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|C Chain C, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|D Chain D, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|E Chain E, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|F Chain F, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|G Chain G, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|H Chain H, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|I Chain I, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|J Chain J, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|K Chain K, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|L Chain L, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa
Length = 336
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 72/121 (59%), Gaps = 1/121 (0%)
Query: 3 PEGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEP-KGIHNLTRLILKQVRM 61
P+GID++F+NVGG++LD VL + +I +CG ISQYN E +G N L++ + RM
Sbjct: 216 PKGIDVFFDNVGGEILDTVLTRIAFKARIVLCGAISQYNNKEAVRGPANYLSLLVNRARM 275
Query: 62 EGFLVSDYNHLYPKFLEMIIPHIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAA 121
EG +V DY +P+ L+ + + K+ ED EGLE+ + LFSG N GK V
Sbjct: 276 EGMVVMDYAQRFPEGLKEMATWLAEGKLQSREDIVEGLETFPETLLKLFSGENFGKLVLK 335
Query: 122 V 122
V
Sbjct: 336 V 336
>pdb|1V3T|A Chain A, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
pdb|1V3T|B Chain B, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
pdb|1V3U|A Chain A, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase In
Apo Form
pdb|1V3U|B Chain B, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase In
Apo Form
pdb|1V3V|A Chain A, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
Complexed With Nadp And 15-Oxo-Pge2
pdb|1V3V|B Chain B, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
Complexed With Nadp And 15-Oxo-Pge2
pdb|2DM6|A Chain A, Crystal Structure Of Anti-Configuration Of Indomethacin
And Leukotriene B4 12-Hydroxydehydrogenase15-Oxo-
Prostaglandin 13-Reductase Complex
pdb|2DM6|B Chain B, Crystal Structure Of Anti-Configuration Of Indomethacin
And Leukotriene B4 12-Hydroxydehydrogenase15-Oxo-
Prostaglandin 13-Reductase Complex
Length = 333
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 71/119 (59%), Gaps = 2/119 (1%)
Query: 3 PEGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYN-LDEPKGIHNLTRLILKQVRM 61
P+G D YF+NVGG+ L+ VL MK G+IA+CG IS YN +D+ + +I KQ+R+
Sbjct: 212 PDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRI 271
Query: 62 EGFLVSDYN-HLYPKFLEMIIPHIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQV 119
EGF+V + + K L ++ + KI Y E +G E+ AA + + +G NLGK V
Sbjct: 272 EGFIVYRWQGDVREKALRDLMKWVLEGKIQYHEHVTKGFENMPAAFIEMLNGANLGKAV 330
>pdb|1ZSV|A Chain A, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
pdb|1ZSV|B Chain B, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
pdb|1ZSV|C Chain C, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
pdb|1ZSV|D Chain D, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
Length = 349
Score = 72.0 bits (175), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 3 PEGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQ-VRM 61
P+G D YF+NVGG+ + V+ MK G+IA+CG IS YN P +++ Q +RM
Sbjct: 228 PDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAISTYNRTGPLPPGPPPEIVIYQELRM 287
Query: 62 EGFLVSDYN-HLYPKFLEMIIPHIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQV 119
E F+V + K L+ ++ + KI Y E EG E+ AA +G+ G NLGK +
Sbjct: 288 EAFVVYRWQGDARQKALKDLLKWVLEGKIQYKEYIIEGFENMPAAFMGMLKGDNLGKTI 346
>pdb|2Y05|A Chain A, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
pdb|2Y05|B Chain B, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
pdb|2Y05|C Chain C, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
pdb|2Y05|D Chain D, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
Length = 328
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 3 PEGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQ-VRM 61
P+G D YF+NVGG+ + V+ MK G+IA+CG IS YN P +++ Q +RM
Sbjct: 207 PDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAISTYNRTGPLPPGPPPEIVIYQELRM 266
Query: 62 EGFLVSDYN-HLYPKFLEMIIPHIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQV 119
E F+V + K L+ ++ + KI Y E EG E+ AA +G+ G NLGK +
Sbjct: 267 EAFVVYRWQGDARQKALKDLLKWVLEGKIQYKEYIIEGFENMPAAFMGMLKGDNLGKTI 325
>pdb|2W4Q|A Chain A, Crystal Structure Of Human Zinc-Binding Alcohol
Dehydrogenase 1 (Zadh1) In Ternary Complex With Nadp And
18beta-Glycyrrhetinic Acid
pdb|2VNA|A Chain A, Structure Of Human Zinc-Binding Alcohol Dehydrogenase 1 (
Zadh1)
pdb|2W98|A Chain A, Crystal Structure Of Human Zinc-Binding Alcohol
Dehydrogenase 1 (Zadh1) In Ternary Complex With Nadp And
Phenylbutazone
pdb|2W98|B Chain B, Crystal Structure Of Human Zinc-Binding Alcohol
Dehydrogenase 1 (Zadh1) In Ternary Complex With Nadp And
Phenylbutazone
Length = 357
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 4/127 (3%)
Query: 3 PEGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLD--EPKGIHNLTRLILKQ-- 58
P G+D+YF+NVGG + D V+ M I +CG ISQYN D P + I K+
Sbjct: 223 PAGVDVYFDNVGGNISDTVISQMNENSHIILCGQISQYNKDVPYPPPLSPAIEAIQKERN 282
Query: 59 VRMEGFLVSDYNHLYPKFLEMIIPHIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQ 118
+ E FLV +Y + + + K K+ E GLE+ AA + +G N+GKQ
Sbjct: 283 ITRERFLVLNYKDKFEPGILQLSQWFKEGKLKIKETVINGLENMGAAFQSMMTGGNIGKQ 342
Query: 119 VAAVASE 125
+ ++ E
Sbjct: 343 IVCISEE 349
>pdb|2ZB4|A Chain A, Crystal Structure Of Human 15-Ketoprostaglandin Delta-13-
Reductase In Complex With Nadp And 15-Keto-Pge2
pdb|2ZB7|A Chain A, Crystal Structure Of Human 15-Ketoprostaglandin Delta-13-
Reductase In Complex With Nadph And Nicotinamide
pdb|2ZB8|A Chain A, Crystal Structure Of Human 15-Ketoprostaglandin Delta-13-
Reductase In Complex With Nadp And Indomethacin
Length = 357
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 4/127 (3%)
Query: 3 PEGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLD--EPKGIHNLTRLILKQ-- 58
P G+D+YF+NVGG + D V+ M I +CG ISQYN D P + I K+
Sbjct: 228 PAGVDVYFDNVGGNISDTVISQMNENSHIILCGQISQYNKDVPYPPPLSPAIEAIQKERN 287
Query: 59 VRMEGFLVSDYNHLYPKFLEMIIPHIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQ 118
+ E FLV +Y + + + K K+ E GLE+ AA + +G N+GKQ
Sbjct: 288 ITRERFLVLNYKDKFEPGILQLSQWFKEGKLKIKETVINGLENMGAAFQSMMTGGNIGKQ 347
Query: 119 VAAVASE 125
+ ++ E
Sbjct: 348 IVCISEE 354
>pdb|2ZB3|A Chain A, Crystal Structure Of Mouse 15-Ketoprostaglandin Delta-13-
Reductase In Complex With Nadph
Length = 353
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 65/127 (51%), Gaps = 4/127 (3%)
Query: 3 PEGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLD--EPKGIHNLTRLILKQ-- 58
P G+D+YF+NVGG + +AV+ M I +CG ISQY+ D P + I K+
Sbjct: 224 PGGVDVYFDNVGGDISNAVISQMNENSHIILCGQISQYSNDVPYPPPLPPAVEAIRKERN 283
Query: 59 VRMEGFLVSDYNHLYPKFLEMIIPHIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQ 118
+ E F V +Y + + + K K+ E A+GLE+ A + +G N+GKQ
Sbjct: 284 ITRERFTVLNYKDKFEPGILQLSQWFKEGKLKVKETMAKGLENMGVAFQSMMTGGNVGKQ 343
Query: 119 VAAVASE 125
+ ++ +
Sbjct: 344 IVCISED 350
>pdb|1VJ1|A Chain A, Crystal Structure Of Putative Nadph-Dependent
Oxidoreductase From Mus Musculus At 2.10 A Resolution
Length = 363
Score = 58.5 bits (140), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 4/127 (3%)
Query: 3 PEGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLD--EPKGIHNLTRLILKQ-- 58
P G+D+YF+NVGG + + V+ I +CG ISQYN D P + I K+
Sbjct: 234 PGGVDVYFDNVGGDISNTVISQXNENSHIILCGQISQYNKDVPYPPPLPPAVEAIRKERN 293
Query: 59 VRMEGFLVSDYNHLYPKFLEMIIPHIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQ 118
+ E F V +Y + + + K K+ E A+GLE+ A +G N+GKQ
Sbjct: 294 ITRERFTVLNYKDKFEPGILQLSQWFKEGKLKVKETVAKGLENXGVAFQSXXTGGNVGKQ 353
Query: 119 VAAVASE 125
+ ++ +
Sbjct: 354 IVCISED 360
>pdb|2C0C|A Chain A, Structure Of The Mgc45594 Gene Product
pdb|2C0C|B Chain B, Structure Of The Mgc45594 Gene Product
pdb|2X1H|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In
Complex With Raloxifene
pdb|2X1H|B Chain B, Crystal Structure Of The Human Mgc45594 Gene Product In
Complex With Raloxifene
Length = 362
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 16/132 (12%)
Query: 2 FPEGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNL------TRLI 55
+PEG+D+ +E+VGG M D + + G++ V G IS Y P G+ + +L+
Sbjct: 228 YPEGVDVVYESVGGAMFDLAVDALATKGRLIVIGFISGYQ--TPTGLSPVKAGTLPAKLL 285
Query: 56 LKQVRMEGFLVSDYNHLYPKFLEMIIPHIKWAKIVYIEDTAE--------GLESALAARV 107
K ++GF ++ Y Y + ++ +V D + GLES A
Sbjct: 286 KKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGLESIFRAVN 345
Query: 108 GLFSGRNLGKQV 119
++ G+N GK V
Sbjct: 346 YMYMGKNTGKIV 357
>pdb|2X7H|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In
Complex With Fenoprofen
pdb|2X7H|B Chain B, Crystal Structure Of The Human Mgc45594 Gene Product In
Complex With Fenoprofen
Length = 370
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 16/132 (12%)
Query: 2 FPEGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNL------TRLI 55
+PEG+D+ +E+VGG M D + + G++ V G IS Y P G+ + +L+
Sbjct: 236 YPEGVDVVYESVGGAMFDLAVDALATKGRLIVIGFISGYQ--TPTGLSPVKAGTLPAKLL 293
Query: 56 LKQVRMEGFLVSDYNHLYPKFLEMIIPHIKWAKIVYIEDTAE--------GLESALAARV 107
K ++GF ++ Y Y + ++ +V D + GLES A
Sbjct: 294 KKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGLESIFRAVN 353
Query: 108 GLFSGRNLGKQV 119
++ G+N GK V
Sbjct: 354 YMYMGKNTGKIV 365
>pdb|2WEK|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In
Complex With Diclofenac
pdb|2WEK|B Chain B, Crystal Structure Of The Human Mgc45594 Gene Product In
Complex With Diclofenac
Length = 341
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 16/132 (12%)
Query: 2 FPEGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNL------TRLI 55
+PEG+D+ +E+VGG M D + + G++ V G IS Y P G+ + +L+
Sbjct: 207 YPEGVDVVYESVGGAMFDLAVDALATKGRLIVIGFISGYQ--TPTGLSPVKAGTLPAKLL 264
Query: 56 LKQVRMEGFL----VSDYNHLYPKFLEMIIPHIKWAKI----VYIEDTAEGLESALAARV 107
K ++GF +S Y LEM + ++ + E GLES A
Sbjct: 265 KKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGLESIFRAVN 324
Query: 108 GLFSGRNLGKQV 119
++ G+N GK V
Sbjct: 325 YMYMGKNTGKIV 336
>pdb|1O89|A Chain A, Crystal Structure Of E. Coli K-12 Yhdh
pdb|1O8C|A Chain A, Crystal Structure Of E. Coli K-12 Yhdh With Bound Nadph
pdb|1O8C|B Chain B, Crystal Structure Of E. Coli K-12 Yhdh With Bound Nadph
pdb|1O8C|C Chain C, Crystal Structure Of E. Coli K-12 Yhdh With Bound Nadph
pdb|1O8C|D Chain D, Crystal Structure Of E. Coli K-12 Yhdh With Bound Nadph
Length = 345
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 10 FENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEG 63
+ VG K+L VL M GG +A CG+ + L + IL+ VR++G
Sbjct: 237 IDTVGDKVLAKVLAQMNYGGCVAACGLAGGFTLPT-----TVMPFILRNVRLQG 285
>pdb|3NX4|A Chain A, Crystal Structure Of The Yhdh Oxidoreductase From
Salmonella Enterica In Complex With Nadp
pdb|3NX4|B Chain B, Crystal Structure Of The Yhdh Oxidoreductase From
Salmonella Enterica In Complex With Nadp
Length = 324
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 10 FENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEG 63
+ VG K+L VL GG +A CG+ + L + IL+ VR++G
Sbjct: 216 IDTVGDKVLAKVLAQXNYGGCVAACGLAGGFALPT-----TVXPFILRNVRLQG 264
>pdb|3KRT|A Chain A, Crystal Structure Of Putative Crotonyl Coa Reductase From
Streptomyces Coelicolor A3(2)
pdb|3KRT|B Chain B, Crystal Structure Of Putative Crotonyl Coa Reductase From
Streptomyces Coelicolor A3(2)
pdb|3KRT|C Chain C, Crystal Structure Of Putative Crotonyl Coa Reductase From
Streptomyces Coelicolor A3(2)
pdb|3KRT|D Chain D, Crystal Structure Of Putative Crotonyl Coa Reductase From
Streptomyces Coelicolor A3(2)
Length = 456
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 4 EGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQY 40
E IDI FE+ G + A + + GG I C S Y
Sbjct: 313 EDIDIVFEHPGRETFGASVFVTRKGGTITTCASTSGY 349
>pdb|3HZZ|A Chain A, 2.4 Angstrom Crystal Structure Of Streptomyces Collinus
Crotonyl Coa CarboxylaseREDUCTASE
pdb|3HZZ|B Chain B, 2.4 Angstrom Crystal Structure Of Streptomyces Collinus
Crotonyl Coa CarboxylaseREDUCTASE
pdb|3HZZ|C Chain C, 2.4 Angstrom Crystal Structure Of Streptomyces Collinus
Crotonyl Coa CarboxylaseREDUCTASE
pdb|3HZZ|D Chain D, 2.4 Angstrom Crystal Structure Of Streptomyces Collinus
Crotonyl Coa CarboxylaseREDUCTASE
Length = 467
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 4 EGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQY 40
E IDI FE+ G + A + + GG I C S Y
Sbjct: 331 EDIDIVFEHPGRETFGASVYVTRKGGTITTCASTSGY 367
>pdb|3GAZ|A Chain A, Crystal Structure Of An Alcohol Dehydrogenase Superfamily
Protein From Novosphingobium Aromaticivorans
pdb|3GAZ|B Chain B, Crystal Structure Of An Alcohol Dehydrogenase Superfamily
Protein From Novosphingobium Aromaticivorans
Length = 343
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 11/64 (17%)
Query: 4 EGIDIYFENVGGKMLDAVLINMKIGGQIAVC-GMISQYNLDEPKGIHNLTRLILKQVRME 62
+G D+ ++ +GG +LDA +K G + C G G H L L KQ
Sbjct: 215 QGFDLVYDTLGGPVLDASFSAVKRFGHVVSCLGW----------GTHKLAPLSFKQATYS 264
Query: 63 GFLV 66
G
Sbjct: 265 GVFT 268
>pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase
pdb|2EIH|B Chain B, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase
Length = 343
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 4 EGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEG 63
+G D ++ G + V+ GG+IA+ G S Y +G + +Q+ + G
Sbjct: 234 KGADKVVDHTGALYFEGVIKATANGGRIAIAGASSGY-----EGTLPFAHVFYRQLSILG 288
Query: 64 FLVSDYNHLYP--KFLEMIIPHIKWAKIVYIEDTAEG 98
++ + L+P +F+E +++ +E AEG
Sbjct: 289 STMASKSRLFPILRFVEEGKLKPVVGQVLPLEAAAEG 325
>pdb|4HZN|A Chain A, The Structure Of The Bifunctional
Acetyltransferase/decarboxylase Lnmk From The Leinamycin
Biosynthetic Pathway Revealing Novel Activity For A
Double Hot Dog Fold
Length = 333
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 6 IDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKG 47
+ + E G +++D V+ + G IAV + +Q++ +PKG
Sbjct: 290 VRVSTETPGEELVDVVISDRDSGRVIAVSTLHTQHDAHDPKG 331
>pdb|4HZP|A Chain A, The Structure Of The Bifunctional
Acetyltransferase/decarboxylase Lnmk From The Leinamycin
Biosynthetic Pathway Revealing Novel Activity For A
Double Hot Dog Fold
Length = 318
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 6 IDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKG 47
+ + E G +++D V+ + G IAV + +Q++ +PKG
Sbjct: 275 VRVSTETPGEELVDVVISDRDSGRVIAVSTLHTQHDAHDPKG 316
>pdb|4HZO|A Chain A, The Structure Of The Bifunctional
Acetyltransferase/decarboxylase Lnmk From The Leinamycin
Biosynthetic Pathway Revealing Novel Activity For A
Double Hot Dog Fold
Length = 318
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 6 IDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKG 47
+ + E G +++D V+ + G IAV + +Q++ +PKG
Sbjct: 275 VRVSTETPGEELVDVVISDRDSGRVIAVSTLHTQHDAHDPKG 316
>pdb|4EYE|A Chain A, Crystal Structure Of A Probable Oxidoreductase From
Mycobacterium Abscessus Solved By Iodide Ion Sad
pdb|4EYE|B Chain B, Crystal Structure Of A Probable Oxidoreductase From
Mycobacterium Abscessus Solved By Iodide Ion Sad
Length = 342
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 26/117 (22%)
Query: 5 GIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNL--TRLILKQVRME 62
G+D+ + +GG D + + G++ V G + GI + RL+L+ +
Sbjct: 227 GVDMVVDPIGGPAFDDAVRTLASEGRLLVVGFAA-------GGIPTIKVNRLLLRNASLI 279
Query: 63 G-----FLVSDYNHLYPKFLEMIIPHIKWAKIVYIEDTAEGLESALAARVGLFSGRN 114
G FL + ++LY K+V AEG+ ++AR+ L GR
Sbjct: 280 GVAWGEFLRTHADYLYET-------QAGLEKLV-----AEGMRPPVSARIPLSEGRQ 324
>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2AR7|B Chain B, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2BBW|A Chain A, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
pdb|2BBW|B Chain B, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
Length = 246
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 7 DIYFENVGGKMLDAVLINMKIGGQIAVCGMISQ 39
++YF+++ K+L AV++ G+ VC I+Q
Sbjct: 17 NLYFQSMASKLLRAVILGPPGSGKGTVCQRIAQ 49
>pdb|1XA0|A Chain A, Crystal Structure Of Mcsg Target Apc35536 From Bacillus
Stearothermophilus
pdb|1XA0|B Chain B, Crystal Structure Of Mcsg Target Apc35536 From Bacillus
Stearothermophilus
Length = 328
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 11 ENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGF 64
+ VGG+ L VL + GG +AV G+ + P +H IL+ V + G
Sbjct: 222 DPVGGRTLATVLSRXRYGGAVAVSGLTGGAEV--PTTVHP---FILRGVSLLGI 270
>pdb|1CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With
D- And L-Malate: Mechanistic Implications
pdb|2CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With
D-And L- Malate: Mechanistic Implications
pdb|3CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With
D-And L- Malate: Mechanistic Implications
pdb|4CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With
D-And L- Malate: Mechanistic Implications
pdb|5CTS|A Chain A, Proposed Mechanism For The Condensation Reaction Of
Citrate Synthase. 1.9-Angstroms Structure Of The
Ternary Complex With Oxaloacetate And Carboxymethyl
Coenzyme A
pdb|6CTS|A Chain A, Proposed Mechanism For The Condensation Reaction Of
Citrate Synthase. 1.9-Angstroms Structure Of The
Ternary Complex With Oxaloacetate And Carboxymethyl
Coenzyme A
pdb|5CSC|A Chain A, Structure Of An Open Form Of Chicken Heart Citrate
Synthase At 2.8 Angstroms Resolution
Length = 433
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 6 IDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFL 65
I + + GG L + ++M GG + G++ + ++ +P + +R GF
Sbjct: 21 IKTFRQQHGGTALGQITVDMSYGGMRGMKGLVYETSVLDPD----------EGIRFRGFS 70
Query: 66 VSDYNHLYPK 75
+ + L PK
Sbjct: 71 IPECQKLLPK 80
>pdb|5CSC|B Chain B, Structure Of An Open Form Of Chicken Heart Citrate
Synthase At 2.8 Angstroms Resolution
Length = 429
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 6 IDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFL 65
I + + GG L + ++M GG + G++ + ++ +P + +R GF
Sbjct: 21 IKTFRQQHGGTALGQITVDMSYGGMRGMKGLVYETSVLDPD----------EGIRFRGFS 70
Query: 66 VSDYNHLYPK 75
+ + L PK
Sbjct: 71 IPECQKLLPK 80
>pdb|1EU1|A Chain A, The Crystal Structure Of Rhodobacter Sphaeroides
Dimethylsulfoxide Reductase Reveals Two Distinct
Molybdenum Coordination Environments
Length = 780
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 25/58 (43%)
Query: 39 QYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIPHIKWAKIVYIEDTA 96
Y P +HN L+ + + + G V+ ++I+PH+ VY + TA
Sbjct: 113 SYGWKSPGRLHNCQVLMRRALNLAGGFVNSSGDYSTAAAQIIMPHVMGTLEVYEQQTA 170
>pdb|4DMR|A Chain A, Reduced Dmso Reductase From Rhodobacter Capsulatus With
Bound Dmso Substrate
Length = 823
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 40 YNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIPHIKWAKIVYIEDTA 96
Y P +HN T L+ + + + G V+ ++I+PH+ VY + TA
Sbjct: 156 YGWKSPGRLHNCTTLLRRMLTLAGGYVNGAGDYSTGAAQVIMPHVVGTLEVYEQQTA 212
>pdb|1E5V|A Chain A, Oxidized Dmso Reductase Exposed To Hepes Buffer
pdb|1E5V|C Chain C, Oxidized Dmso Reductase Exposed To Hepes Buffer
pdb|1H5N|A Chain A, Dmso Reductase Modified By The Presence Of Dms And Air
pdb|1H5N|C Chain C, Dmso Reductase Modified By The Presence Of Dms And Air
pdb|1DMR|A Chain A, Oxidized Dmso Reductase From Rhodobacter Capsulatus
pdb|2DMR|A Chain A, Dithionite Reduced Dmso Reductase From Rhodobacter
Capsulatus
pdb|3DMR|A Chain A, Structure Of Dmso Reductase From Rhodobacter Capsulatus At
Ph 7.0
Length = 823
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 40 YNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIPHIKWAKIVYIEDTA 96
Y P +HN T L+ + + + G V+ ++I+PH+ VY + TA
Sbjct: 156 YGWKSPGRLHNCTTLLRRMLTLAGGYVNGAGDYSTGAAQVIMPHVVGTLEVYEQQTA 212
>pdb|1DMS|A Chain A, Structure Of Dmso Reductase
Length = 781
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 40 YNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIPHIKWAKIVYIEDTA 96
Y P +HN T L+ + + + G V+ ++I+PH+ VY + TA
Sbjct: 114 YGWKSPGRLHNCTTLLRRMLTLAGGYVNGAGDYSTGAAQVIMPHVVGTLEVYEQQTA 170
>pdb|1E60|A Chain A, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
Buffer
pdb|1E60|C Chain C, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
Buffer
pdb|1E61|A Chain A, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
Buffer
pdb|1E61|C Chain C, Oxidized Dmso Reductase Exposed To Hepes-Structure Ii
Buffer
Length = 823
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 40 YNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIPHIKWAKIVYIEDTA 96
Y P +HN T L+ + + + G V+ ++I+PH+ VY + TA
Sbjct: 156 YGWKSPGRLHNCTTLLRRMLTLAGGYVNGAGDYSTGAAQVIMPHVVGTLEVYEQQTA 212
>pdb|1E18|A Chain A, Tungsten-Susbstituted Dmso Reductase From Rhodobacter
Capsulatus
Length = 823
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 40 YNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIPHIKWAKIVYIEDTA 96
Y P +HN T L+ + + + G V+ ++I+PH+ VY + TA
Sbjct: 156 YGWKSPGRLHNCTTLLRRMLTLAGGYVNGAGDYSTGAAQVIMPHVVGTLEVYEQQTA 212
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 79 MIIPHIKWAKIVYIEDTAEGLESALAARV 107
M +P++ WA I +ED E L A+ A V
Sbjct: 2 MTVPNVTWADIGALEDIREELTMAILAPV 30
>pdb|2FJK|A Chain A, Crystal Structure Of Fructose-1,6-Bisphosphate Aldolase In
Thermus Caldophilus
pdb|2FJK|B Chain B, Crystal Structure Of Fructose-1,6-Bisphosphate Aldolase In
Thermus Caldophilus
pdb|2FJK|C Chain C, Crystal Structure Of Fructose-1,6-Bisphosphate Aldolase In
Thermus Caldophilus
pdb|2FJK|D Chain D, Crystal Structure Of Fructose-1,6-Bisphosphate Aldolase In
Thermus Caldophilus
Length = 305
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 55 ILKQVRMEGFLVSDYNHLYPKFLEMIIPHIKWAKIVYIEDTAEGLESALAARVGLFSGRN 114
IL++ R EG+ V +N +F + I+ + K I +EG + GR
Sbjct: 8 ILRKARAEGYGVGAFNTNNXEFTQAILEAAEEXKSPVILALSEGAXK--------YGGRA 59
Query: 115 LGKQVAAVASE 125
L + V A+A E
Sbjct: 60 LTRXVVALAQE 70
>pdb|3SAJ|A Chain A, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|B Chain B, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|C Chain C, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|D Chain D, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
Length = 384
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 71 HLYPKFLEM---IIPHIKWAKIVYIEDTAEGL 99
L P+ E II H KW VYI D GL
Sbjct: 110 QLRPELQEALISIIDHYKWQTFVYIYDADRGL 141
>pdb|2AEE|A Chain A, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Pyogenes
pdb|2AEE|B Chain B, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Pyogenes
Length = 211
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 14/79 (17%)
Query: 12 NVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQV------------ 59
+ GG +LDA + G V G+++ + + PK N +K +
Sbjct: 128 STGGSVLDAAAAASREGAD--VLGVVAIFTYELPKASQNFKEAGIKLITLSNYTELIAVA 185
Query: 60 RMEGFLVSDYNHLYPKFLE 78
+++G++ +D HL KF E
Sbjct: 186 KLQGYITNDGLHLLKKFKE 204
>pdb|1TT7|A Chain A, Crystal Structure Of Bacillus Subtilis Protein Yhfp
pdb|1TT7|B Chain B, Crystal Structure Of Bacillus Subtilis Protein Yhfp
pdb|1TT7|C Chain C, Crystal Structure Of Bacillus Subtilis Protein Yhfp
pdb|1TT7|D Chain D, Crystal Structure Of Bacillus Subtilis Protein Yhfp
pdb|1TT7|E Chain E, Crystal Structure Of Bacillus Subtilis Protein Yhfp
pdb|1TT7|F Chain F, Crystal Structure Of Bacillus Subtilis Protein Yhfp
pdb|1Y9E|A Chain A, Crystal Structure Of Bacillus Subtilis Protein Yhfp With
Nad Bound
pdb|1Y9E|B Chain B, Crystal Structure Of Bacillus Subtilis Protein Yhfp With
Nad Bound
pdb|1Y9E|C Chain C, Crystal Structure Of Bacillus Subtilis Protein Yhfp With
Nad Bound
pdb|1Y9E|D Chain D, Crystal Structure Of Bacillus Subtilis Protein Yhfp With
Nad Bound
pdb|1Y9E|E Chain E, Crystal Structure Of Bacillus Subtilis Protein Yhfp With
Nad Bound
pdb|1Y9E|F Chain F, Crystal Structure Of Bacillus Subtilis Protein Yhfp With
Nad Bound
Length = 330
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 11 ENVGGKMLDAVLINMKIGGQIAVCGM 36
+ VGGK L ++L ++ GG +AV G+
Sbjct: 223 DPVGGKQLASLLSKIQYGGSVAVSGL 248
>pdb|3RRX|A Chain A, Crystal Structure Of Q683a Mutant Of
Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas
Sp. Bb1
Length = 822
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 49 HNLTRLILKQVRMEGFLVSDYNHLYPKFLE 78
H LT ++ Q+ +GF+VSD+N KF+E
Sbjct: 275 HLLTDVLKNQLGFDGFVVSDWN--AHKFVE 302
>pdb|3USZ|A Chain A, Crystal Structure Of Truncated Exo-1,31,4-Beta-Glucanase
(Exop) From Pseudoalteromonas Sp. Bb1
pdb|3UT0|A Chain A, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|B Chain B, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|C Chain C, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|D Chain D, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
Length = 822
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 49 HNLTRLILKQVRMEGFLVSDYNHLYPKFLE 78
H LT ++ Q+ +GF+VSD+N KF+E
Sbjct: 275 HLLTDVLKNQLGFDGFVVSDWNAH--KFVE 302
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.142 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,586,557
Number of Sequences: 62578
Number of extensions: 130210
Number of successful extensions: 305
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 259
Number of HSP's gapped (non-prelim): 43
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)