Query 035717
Match_columns 125
No_of_seqs 125 out of 1317
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 05:42:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035717.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035717hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2130 Putative NADP-dependen 99.9 2.2E-20 4.7E-25 122.0 11.8 124 1-124 215-340 (340)
2 PLN03154 putative allyl alcoho 99.8 1.4E-19 3E-24 123.5 12.7 123 3-125 226-348 (348)
3 KOG1196 Predicted NAD-dependen 99.8 4.8E-19 1E-23 115.5 10.0 125 1-125 219-343 (343)
4 PF13602 ADH_zinc_N_2: Zinc-bi 99.8 7.1E-19 1.5E-23 104.2 6.0 107 2-120 16-127 (127)
5 KOG1197 Predicted quinone oxid 99.8 4.5E-18 9.8E-23 109.1 9.1 118 3-125 213-333 (336)
6 COG1064 AdhP Zn-dependent alco 99.7 2.2E-17 4.8E-22 110.7 10.9 109 6-123 230-338 (339)
7 cd08295 double_bond_reductase_ 99.7 3E-16 6.6E-21 106.5 13.1 120 3-122 219-338 (338)
8 cd08294 leukotriene_B4_DH_like 99.7 6.4E-16 1.4E-20 104.3 12.1 120 3-122 209-329 (329)
9 TIGR02825 B4_12hDH leukotriene 99.7 1.5E-15 3.2E-20 102.7 12.6 118 3-120 205-324 (325)
10 COG0604 Qor NADPH:quinone redu 99.7 1.3E-15 2.8E-20 103.1 11.5 114 4-122 210-326 (326)
11 PLN02178 cinnamyl-alcohol dehy 99.7 8.2E-16 1.8E-20 105.9 10.7 107 5-123 242-349 (375)
12 PLN02514 cinnamyl-alcohol dehy 99.7 1.7E-15 3.8E-20 103.7 11.2 108 5-124 244-352 (357)
13 cd08291 ETR_like_1 2-enoyl thi 99.7 2E-15 4.3E-20 102.0 11.3 113 4-121 211-324 (324)
14 PRK10309 galactitol-1-phosphat 99.7 2.5E-15 5.3E-20 102.4 11.4 116 4-122 227-346 (347)
15 PLN02586 probable cinnamyl alc 99.6 2.4E-15 5.3E-20 103.1 10.5 107 5-123 247-354 (360)
16 TIGR01202 bchC 2-desacetyl-2-h 99.6 2.1E-15 4.5E-20 101.5 9.2 107 4-121 199-308 (308)
17 PRK09880 L-idonate 5-dehydroge 99.6 6.3E-15 1.4E-19 100.4 11.4 106 5-122 235-343 (343)
18 cd08293 PTGR2 Prostaglandin re 99.6 1.1E-14 2.4E-19 99.0 12.4 120 3-122 222-345 (345)
19 cd08281 liver_ADH_like1 Zinc-d 99.6 1.4E-14 3E-19 99.7 10.4 112 3-120 257-371 (371)
20 COG1062 AdhC Zn-dependent alco 99.6 9.6E-15 2.1E-19 97.3 8.3 112 2-121 251-365 (366)
21 PLN02827 Alcohol dehydrogenase 99.6 6.8E-14 1.5E-18 96.5 11.3 113 3-123 261-377 (378)
22 cd08239 THR_DH_like L-threonin 99.6 8.3E-14 1.8E-18 94.6 11.1 107 4-122 230-339 (339)
23 TIGR02822 adh_fam_2 zinc-bindi 99.6 1.2E-13 2.6E-18 93.8 11.4 106 4-120 222-328 (329)
24 TIGR03451 mycoS_dep_FDH mycoth 99.5 1.5E-13 3.3E-18 94.1 11.9 111 4-121 244-357 (358)
25 TIGR03201 dearomat_had 6-hydro 99.5 1.1E-13 2.4E-18 94.5 10.6 108 4-122 236-349 (349)
26 KOG1202 Animal-type fatty acid 99.5 7.3E-14 1.6E-18 104.8 10.0 118 3-125 1623-1744(2376)
27 cd08238 sorbose_phosphate_red 99.5 1.5E-13 3.3E-18 95.7 11.0 111 4-123 256-369 (410)
28 cd08270 MDR4 Medium chain dehy 99.5 3.6E-13 7.7E-18 90.1 12.4 114 3-122 190-305 (305)
29 cd08237 ribitol-5-phosphate_DH 99.5 9.9E-14 2.1E-18 94.6 9.6 107 5-123 222-340 (341)
30 cd08292 ETR_like_2 2-enoyl thi 99.5 2.1E-13 4.6E-18 91.8 10.8 113 4-121 207-324 (324)
31 cd08233 butanediol_DH_like (2R 99.5 3.5E-13 7.6E-18 92.0 11.0 106 4-120 240-350 (351)
32 cd05288 PGDH Prostaglandin deh 99.5 5.4E-13 1.2E-17 90.1 10.9 118 3-120 212-329 (329)
33 cd08230 glucose_DH Glucose deh 99.5 4.2E-13 9.1E-18 91.8 9.5 108 4-122 237-355 (355)
34 cd08274 MDR9 Medium chain dehy 99.5 9.9E-13 2.2E-17 89.5 11.1 109 4-122 242-350 (350)
35 cd08246 crotonyl_coA_red croto 99.4 1.9E-12 4.1E-17 89.7 11.0 107 5-121 285-392 (393)
36 cd08244 MDR_enoyl_red Possible 99.4 4.4E-12 9.6E-17 85.4 12.2 114 4-122 210-324 (324)
37 KOG0023 Alcohol dehydrogenase, 99.4 6.2E-13 1.3E-17 88.1 7.7 106 7-124 248-356 (360)
38 cd05283 CAD1 Cinnamyl alcohol 99.4 1.4E-12 3E-17 88.7 9.7 106 4-121 231-337 (337)
39 cd08231 MDR_TM0436_like Hypoth 99.4 2.3E-12 5.1E-17 88.3 10.6 109 4-122 248-361 (361)
40 TIGR01751 crot-CoA-red crotony 99.4 3.6E-12 7.7E-17 88.5 11.5 110 4-123 279-388 (398)
41 TIGR02823 oxido_YhdH putative 99.4 6.1E-12 1.3E-16 84.8 12.3 113 4-122 210-323 (323)
42 PLN02740 Alcohol dehydrogenase 99.4 3.8E-12 8.2E-17 88.0 11.5 111 4-122 267-381 (381)
43 cd08290 ETR 2-enoyl thioester 99.4 4E-12 8.7E-17 86.3 11.4 113 5-122 221-341 (341)
44 KOG0024 Sorbitol dehydrogenase 99.4 3.1E-12 6.7E-17 85.0 10.1 108 5-123 242-353 (354)
45 cd05282 ETR_like 2-enoyl thioe 99.4 4.7E-12 1E-16 85.2 11.4 113 4-121 206-323 (323)
46 cd08296 CAD_like Cinnamyl alco 99.4 2.6E-12 5.7E-17 87.2 10.2 106 4-121 227-333 (333)
47 COG1063 Tdh Threonine dehydrog 99.4 3.6E-12 7.8E-17 87.3 10.2 109 4-122 237-350 (350)
48 cd05280 MDR_yhdh_yhfp Yhdh and 99.4 7E-12 1.5E-16 84.5 11.2 113 4-122 212-325 (325)
49 KOG1198 Zinc-binding oxidoredu 99.4 2.2E-12 4.7E-17 88.0 8.5 120 3-123 223-346 (347)
50 cd08289 MDR_yhfp_like Yhfp put 99.4 7.8E-12 1.7E-16 84.4 11.1 114 4-122 212-326 (326)
51 cd08277 liver_alcohol_DH_like 99.4 9.3E-12 2E-16 85.6 11.0 109 4-121 253-365 (365)
52 PRK13771 putative alcohol dehy 99.4 1.2E-11 2.6E-16 83.8 11.2 109 5-122 225-333 (334)
53 cd08301 alcohol_DH_plants Plan 99.4 1.5E-11 3.1E-16 84.7 11.3 110 3-120 255-368 (369)
54 cd08263 Zn_ADH10 Alcohol dehyd 99.4 1.3E-11 2.8E-16 84.9 11.0 110 4-121 255-367 (367)
55 cd08300 alcohol_DH_class_III c 99.4 1.7E-11 3.6E-16 84.4 11.2 111 3-121 254-368 (368)
56 cd08240 6_hydroxyhexanoate_dh_ 99.4 1.2E-11 2.7E-16 84.4 10.3 108 4-122 242-350 (350)
57 TIGR02819 fdhA_non_GSH formald 99.3 9.5E-12 2.1E-16 86.4 9.4 114 4-123 253-391 (393)
58 PTZ00354 alcohol dehydrogenase 99.3 5.1E-11 1.1E-15 80.5 12.6 118 3-124 208-330 (334)
59 cd08276 MDR7 Medium chain dehy 99.3 3.6E-11 7.9E-16 81.2 11.3 109 4-122 228-336 (336)
60 cd05286 QOR2 Quinone oxidoredu 99.3 5.1E-11 1.1E-15 79.6 11.9 114 4-122 204-320 (320)
61 cd08250 Mgc45594_like Mgc45594 99.3 5E-11 1.1E-15 80.6 11.8 119 3-121 205-329 (329)
62 TIGR02818 adh_III_F_hyde S-(hy 99.3 4.1E-11 8.9E-16 82.5 11.5 111 4-122 254-368 (368)
63 cd08297 CAD3 Cinnamyl alcohol 99.3 5E-11 1.1E-15 81.0 11.1 109 3-122 232-341 (341)
64 cd08254 hydroxyacyl_CoA_DH 6-h 99.3 5.1E-11 1.1E-15 80.7 11.1 107 4-122 231-338 (338)
65 cd05284 arabinose_DH_like D-ar 99.3 3.6E-11 7.9E-16 81.7 10.4 106 4-122 234-340 (340)
66 cd08285 NADP_ADH NADP(H)-depen 99.3 4.9E-11 1.1E-15 81.5 10.9 111 4-122 234-351 (351)
67 PRK10083 putative oxidoreducta 99.3 7.1E-11 1.5E-15 80.2 11.3 108 5-124 228-339 (339)
68 cd08242 MDR_like Medium chain 99.3 5.4E-11 1.2E-15 80.2 10.3 104 4-122 213-319 (319)
69 cd08283 FDH_like_1 Glutathione 99.3 4.5E-11 9.8E-16 82.8 10.0 109 4-122 253-386 (386)
70 cd08266 Zn_ADH_like1 Alcohol d 99.3 9.9E-11 2.1E-15 79.1 11.4 109 4-122 234-342 (342)
71 cd08243 quinone_oxidoreductase 99.3 1.1E-10 2.3E-15 78.4 11.4 111 4-120 207-319 (320)
72 cd08236 sugar_DH NAD(P)-depend 99.3 9.9E-11 2.2E-15 79.6 11.2 114 4-120 226-343 (343)
73 cd08232 idonate-5-DH L-idonate 99.3 1.4E-10 3.1E-15 78.8 11.9 107 4-122 230-339 (339)
74 KOG0025 Zn2+-binding dehydroge 99.3 5.5E-11 1.2E-15 78.0 9.3 114 5-123 233-353 (354)
75 cd08262 Zn_ADH8 Alcohol dehydr 99.3 6.3E-11 1.4E-15 80.6 10.0 107 4-121 232-341 (341)
76 cd08275 MDR3 Medium chain dehy 99.3 2.2E-10 4.8E-15 77.4 12.4 120 3-122 204-337 (337)
77 cd08235 iditol_2_DH_like L-idi 99.3 1E-10 2.2E-15 79.6 10.5 108 4-121 233-343 (343)
78 PRK05396 tdh L-threonine 3-deh 99.3 1.4E-10 3.1E-15 78.9 11.3 109 4-123 231-341 (341)
79 PRK10754 quinone oxidoreductas 99.3 3E-10 6.6E-15 76.8 12.7 114 4-122 208-327 (327)
80 PLN02702 L-idonate 5-dehydroge 99.3 1.6E-10 3.5E-15 79.4 11.3 107 3-121 252-363 (364)
81 cd08284 FDH_like_2 Glutathione 99.2 1.7E-10 3.7E-15 78.5 10.9 107 4-121 234-343 (344)
82 cd08278 benzyl_alcohol_DH Benz 99.2 1.8E-10 4E-15 79.2 11.1 112 3-121 252-365 (365)
83 TIGR00692 tdh L-threonine 3-de 99.2 2.3E-10 4.9E-15 77.9 11.3 109 4-122 229-340 (340)
84 KOG0022 Alcohol dehydrogenase, 99.2 1.7E-10 3.7E-15 76.6 9.6 112 2-121 259-374 (375)
85 cd08256 Zn_ADH2 Alcohol dehydr 99.2 1.5E-10 3.3E-15 79.1 9.9 105 4-120 242-350 (350)
86 cd05278 FDH_like Formaldehyde 99.2 2.1E-10 4.5E-15 78.1 10.4 109 4-122 235-347 (347)
87 cd08259 Zn_ADH5 Alcohol dehydr 99.2 2.2E-10 4.8E-15 77.3 10.4 107 5-121 226-332 (332)
88 cd05276 p53_inducible_oxidored 99.2 3.7E-10 8.1E-15 75.5 11.4 112 4-120 207-323 (323)
89 cd05285 sorbitol_DH Sorbitol d 99.2 2.9E-10 6.3E-15 77.5 10.9 105 4-120 233-341 (343)
90 cd08260 Zn_ADH6 Alcohol dehydr 99.2 2.4E-10 5.2E-15 77.9 10.3 109 5-121 233-344 (345)
91 cd08261 Zn_ADH7 Alcohol dehydr 99.2 3.5E-10 7.5E-15 76.9 10.8 108 4-122 226-337 (337)
92 cd08269 Zn_ADH9 Alcohol dehydr 99.2 6E-10 1.3E-14 74.7 11.7 111 4-120 197-311 (312)
93 cd08249 enoyl_reductase_like e 99.2 3.1E-10 6.8E-15 77.3 10.1 108 3-122 219-339 (339)
94 cd08241 QOR1 Quinone oxidoredu 99.2 8.4E-10 1.8E-14 73.9 11.9 113 4-121 207-323 (323)
95 TIGR02824 quinone_pig3 putativ 99.2 9.7E-10 2.1E-14 73.7 12.2 114 4-122 207-325 (325)
96 PF00107 ADH_zinc_N: Zinc-bind 99.2 7E-11 1.5E-15 70.0 5.9 72 4-85 57-129 (130)
97 cd08252 AL_MDR Arginate lyase 99.2 7.3E-10 1.6E-14 75.1 11.4 110 4-121 216-336 (336)
98 cd05281 TDH Threonine dehydrog 99.2 5.1E-10 1.1E-14 76.2 10.6 109 4-122 230-341 (341)
99 cd08282 PFDH_like Pseudomonas 99.2 3.8E-10 8.1E-15 77.9 9.9 114 3-122 241-375 (375)
100 cd08268 MDR2 Medium chain dehy 99.2 1.3E-09 2.8E-14 73.2 12.0 114 4-122 212-328 (328)
101 cd08272 MDR6 Medium chain dehy 99.2 1.3E-09 2.7E-14 73.3 11.9 110 4-122 210-326 (326)
102 cd08279 Zn_ADH_class_III Class 99.2 9.8E-10 2.1E-14 75.5 11.5 110 4-119 250-362 (363)
103 cd08253 zeta_crystallin Zeta-c 99.2 1.4E-09 3.1E-14 72.8 12.0 113 4-122 212-325 (325)
104 PRK09422 ethanol-active dehydr 99.2 7.6E-10 1.6E-14 75.2 10.6 107 5-123 230-337 (338)
105 cd08273 MDR8 Medium chain dehy 99.1 8E-10 1.7E-14 74.7 10.3 116 3-120 201-330 (331)
106 cd08264 Zn_ADH_like2 Alcohol d 99.1 6.8E-10 1.5E-14 75.0 9.7 103 4-118 222-324 (325)
107 cd08234 threonine_DH_like L-th 99.1 2E-09 4.4E-14 72.9 11.5 107 3-120 224-333 (334)
108 cd05289 MDR_like_2 alcohol deh 99.1 2.3E-09 4.9E-14 71.5 11.6 103 4-120 207-309 (309)
109 cd08286 FDH_like_ADH2 formalde 99.1 2E-09 4.2E-14 73.4 11.3 107 4-122 234-345 (345)
110 cd05279 Zn_ADH1 Liver alcohol 99.1 1.7E-09 3.6E-14 74.5 11.0 110 3-120 251-364 (365)
111 cd08288 MDR_yhdh Yhdh putative 99.1 3.2E-09 6.9E-14 71.6 12.0 114 3-122 210-324 (324)
112 TIGR02817 adh_fam_1 zinc-bindi 99.1 2.6E-09 5.7E-14 72.4 11.6 109 4-121 215-334 (336)
113 cd08251 polyketide_synthase po 99.1 4E-10 8.6E-15 75.0 7.4 112 4-120 188-303 (303)
114 cd08271 MDR5 Medium chain dehy 99.1 1.2E-09 2.6E-14 73.5 9.6 116 3-122 207-325 (325)
115 cd08255 2-desacetyl-2-hydroxye 99.1 1.8E-09 4E-14 71.4 10.0 111 4-120 158-277 (277)
116 cd08265 Zn_ADH3 Alcohol dehydr 99.1 3E-09 6.4E-14 73.7 11.2 106 4-120 274-383 (384)
117 cd08287 FDH_like_ADH3 formalde 99.1 2.7E-09 5.8E-14 72.7 10.4 106 4-121 236-344 (345)
118 cd08248 RTN4I1 Human Reticulon 99.1 1.6E-09 3.4E-14 73.9 9.3 118 4-121 226-350 (350)
119 cd08245 CAD Cinnamyl alcohol d 99.1 3.1E-09 6.7E-14 72.0 10.3 106 4-120 224-330 (330)
120 cd08247 AST1_like AST1 is a cy 99.1 2.7E-09 5.8E-14 73.0 10.0 120 3-122 223-352 (352)
121 smart00829 PKS_ER Enoylreducta 99.0 5.3E-09 1.2E-13 68.9 10.3 112 4-120 174-288 (288)
122 cd05195 enoyl_red enoyl reduct 99.0 3.4E-09 7.3E-14 69.9 9.1 112 4-120 178-293 (293)
123 TIGR03366 HpnZ_proposed putati 99.0 1.7E-09 3.6E-14 72.0 5.7 90 4-102 186-280 (280)
124 cd08298 CAD2 Cinnamyl alcohol 98.9 1.2E-08 2.7E-13 69.0 9.7 105 4-120 224-329 (329)
125 cd08267 MDR1 Medium chain dehy 98.9 7.7E-08 1.7E-12 64.6 10.8 110 4-120 207-319 (319)
126 cd08299 alcohol_DH_class_I_II_ 98.7 2.7E-07 5.8E-12 63.9 10.9 111 4-122 259-373 (373)
127 cd08258 Zn_ADH4 Alcohol dehydr 98.6 4.5E-07 9.8E-12 61.1 8.0 74 4-87 232-306 (306)
128 cd00401 AdoHcyase S-adenosyl-L 98.5 1.2E-06 2.6E-11 61.3 8.1 108 4-123 256-377 (413)
129 cd05188 MDR Medium chain reduc 98.0 3E-05 6.4E-10 50.8 6.9 71 3-83 199-270 (271)
130 PRK11873 arsM arsenite S-adeno 97.4 0.0024 5.1E-08 42.5 8.7 104 4-121 145-260 (272)
131 PRK09424 pntA NAD(P) transhydr 97.2 0.00073 1.6E-08 48.9 4.8 81 4-92 247-335 (509)
132 smart00846 Gp_dh_N Glyceraldeh 92.9 0.13 2.8E-06 31.4 2.7 35 4-38 86-121 (149)
133 PF00044 Gp_dh_N: Glyceraldehy 92.4 0.099 2.1E-06 32.0 1.8 34 5-38 88-122 (151)
134 TIGR01532 E4PD_g-proteo D-eryt 89.4 0.49 1.1E-05 32.7 3.1 34 4-37 88-122 (325)
135 PTZ00434 cytosolic glyceraldeh 89.1 0.36 7.8E-06 33.8 2.4 33 5-37 104-137 (361)
136 PLN03096 glyceraldehyde-3-phos 86.4 1.2 2.6E-05 31.7 3.6 34 4-37 149-183 (395)
137 PLN02358 glyceraldehyde-3-phos 86.3 1.1 2.5E-05 31.1 3.4 35 4-38 94-129 (338)
138 TIGR00438 rrmJ cell division p 85.4 2 4.4E-05 26.9 4.1 19 17-35 128-146 (188)
139 TIGR01534 GAPDH-I glyceraldehy 85.0 1.6 3.4E-05 30.3 3.6 33 5-37 90-123 (327)
140 PRK15425 gapA glyceraldehyde-3 84.9 1.4 3.1E-05 30.6 3.4 33 5-37 89-122 (331)
141 PRK13535 erythrose 4-phosphate 84.1 1.8 4E-05 30.1 3.6 34 4-37 90-124 (336)
142 PRK08955 glyceraldehyde-3-phos 83.5 1.7 3.7E-05 30.3 3.3 33 5-37 88-121 (334)
143 PRK07403 glyceraldehyde-3-phos 83.5 1.8 3.9E-05 30.2 3.4 33 5-37 90-123 (337)
144 PRK00377 cbiT cobalt-precorrin 82.7 2.8 6.1E-05 26.6 3.9 30 4-33 110-143 (198)
145 PTZ00023 glyceraldehyde-3-phos 82.5 1.7 3.7E-05 30.3 3.0 34 4-37 89-123 (337)
146 PRK07729 glyceraldehyde-3-phos 82.4 2.1 4.6E-05 29.9 3.4 34 4-37 88-122 (343)
147 PLN02237 glyceraldehyde-3-phos 81.4 2.6 5.7E-05 30.5 3.6 34 4-37 164-198 (442)
148 PF01234 NNMT_PNMT_TEMT: NNMT/ 81.3 2 4.4E-05 28.7 2.9 36 3-38 156-202 (256)
149 PF08241 Methyltransf_11: Meth 80.2 1.3 2.9E-05 23.7 1.6 30 4-33 59-95 (95)
150 TIGR03840 TMPT_Se_Te thiopurin 79.5 3.8 8.1E-05 26.6 3.7 33 5-37 113-154 (213)
151 PF13065 DUF3928: Protein of u 78.7 7.6 0.00017 20.7 4.0 35 73-110 57-91 (95)
152 TIGR00561 pntA NAD(P) transhyd 78.5 2.4 5.2E-05 31.3 2.8 35 4-38 246-287 (511)
153 TIGR00406 prmA ribosomal prote 77.8 5.5 0.00012 27.0 4.2 34 4-37 224-261 (288)
154 PRK05476 S-adenosyl-L-homocyst 77.7 3.5 7.7E-05 29.7 3.4 35 4-38 266-302 (425)
155 PRK00517 prmA ribosomal protei 77.1 5.2 0.00011 26.5 3.9 33 5-37 179-215 (250)
156 PF01209 Ubie_methyltran: ubiE 76.6 3.5 7.7E-05 27.1 3.0 33 5-37 116-155 (233)
157 PLN02232 ubiquinone biosynthes 76.3 6 0.00013 24.2 3.8 32 5-36 44-82 (160)
158 PRK04266 fibrillarin; Provisio 75.0 5.7 0.00012 26.0 3.6 31 4-34 140-175 (226)
159 PLN02494 adenosylhomocysteinas 74.8 2.9 6.4E-05 30.5 2.4 33 5-37 309-343 (477)
160 PRK11088 rrmA 23S rRNA methylt 74.2 4.5 9.7E-05 27.1 3.1 31 5-35 151-181 (272)
161 PRK11188 rrmJ 23S rRNA methylt 73.3 7.3 0.00016 25.1 3.8 18 17-34 147-164 (209)
162 TIGR00936 ahcY adenosylhomocys 72.8 6.3 0.00014 28.3 3.6 33 5-37 250-284 (406)
163 PRK13942 protein-L-isoaspartat 71.0 7.3 0.00016 25.1 3.4 31 4-34 144-175 (212)
164 COG0057 GapA Glyceraldehyde-3- 71.0 4.3 9.3E-05 28.3 2.4 34 5-38 89-124 (335)
165 PTZ00353 glycosomal glyceralde 70.3 4 8.7E-05 28.6 2.2 26 5-30 92-118 (342)
166 PRK00107 gidB 16S rRNA methylt 70.0 8.3 0.00018 24.5 3.4 31 4-34 111-144 (187)
167 COG2242 CobL Precorrin-6B meth 70.0 7.7 0.00017 24.8 3.2 32 5-36 102-136 (187)
168 PRK13943 protein-L-isoaspartat 68.3 9.9 0.00022 26.4 3.7 30 5-34 149-179 (322)
169 PRK13944 protein-L-isoaspartat 67.4 9.2 0.0002 24.4 3.3 31 4-34 141-172 (205)
170 TIGR00477 tehB tellurite resis 67.3 13 0.00027 23.6 3.9 32 4-35 93-133 (195)
171 COG4091 Predicted homoserine d 67.0 24 0.00052 25.2 5.3 34 3-36 99-134 (438)
172 PLN02272 glyceraldehyde-3-phos 65.9 6.9 0.00015 28.2 2.7 31 5-35 174-205 (421)
173 PRK08287 cobalt-precorrin-6Y C 65.9 11 0.00023 23.6 3.3 31 4-34 96-130 (187)
174 PRK11207 tellurite resistance 65.8 14 0.0003 23.5 3.8 33 4-36 94-135 (197)
175 PRK08306 dipicolinate synthase 65.0 13 0.00028 25.5 3.7 34 4-37 209-243 (296)
176 PRK13255 thiopurine S-methyltr 64.7 13 0.00028 24.2 3.6 32 5-36 116-156 (218)
177 PF02005 TRM: N2,N2-dimethylgu 64.6 9.6 0.00021 27.1 3.1 33 3-35 119-154 (377)
178 PRK04457 spermidine synthase; 64.5 14 0.00031 24.7 3.9 32 3-34 134-176 (262)
179 PF01118 Semialdhyde_dh: Semia 64.3 11 0.00023 21.9 2.9 33 4-36 65-98 (121)
180 TIGR00417 speE spermidine synt 64.1 15 0.00031 24.7 3.8 33 3-35 143-186 (270)
181 PF03447 NAD_binding_3: Homose 64.1 10 0.00022 21.7 2.8 30 5-34 59-89 (117)
182 KOG1540 Ubiquinone biosynthesi 63.6 7.9 0.00017 26.2 2.4 21 17-37 196-216 (296)
183 KOG1575 Voltage-gated shaker-l 63.4 34 0.00074 24.1 5.5 39 72-110 142-180 (336)
184 PF13489 Methyltransf_23: Meth 63.1 12 0.00025 22.3 3.0 32 4-35 77-115 (161)
185 COG2226 UbiE Methylase involve 62.5 13 0.00028 24.7 3.3 33 5-37 119-158 (238)
186 COG2518 Pcm Protein-L-isoaspar 62.5 6.5 0.00014 25.5 1.9 30 5-34 138-168 (209)
187 PRK00536 speE spermidine synth 62.0 16 0.00035 24.6 3.7 33 4-36 138-172 (262)
188 cd02440 AdoMet_MTases S-adenos 61.6 22 0.00048 18.6 4.5 32 3-34 64-103 (107)
189 COG0275 Predicted S-adenosylme 61.3 12 0.00025 25.9 2.9 22 17-38 226-247 (314)
190 PF01113 DapB_N: Dihydrodipico 60.7 10 0.00022 22.2 2.4 32 5-36 67-98 (124)
191 PLN02233 ubiquinone biosynthes 60.6 17 0.00038 24.2 3.7 32 5-36 145-183 (261)
192 PF04016 DUF364: Domain of unk 60.4 35 0.00076 20.7 4.7 67 5-88 62-132 (147)
193 PF07109 Mg-por_mtran_C: Magne 60.3 17 0.00037 20.6 3.1 28 96-124 7-34 (97)
194 PF12324 HTH_15: Helix-turn-he 59.8 24 0.00051 19.1 3.4 47 73-119 22-74 (77)
195 TIGR00452 methyltransferase, p 59.3 15 0.00032 25.5 3.2 30 5-34 188-224 (314)
196 PLN02244 tocopherol O-methyltr 58.5 21 0.00045 24.9 3.9 32 4-35 185-223 (340)
197 PRK04207 glyceraldehyde-3-phos 57.9 13 0.00027 26.0 2.8 33 4-36 77-110 (341)
198 cd08238 sorbose_phosphate_red 57.9 3 6.6E-05 29.6 -0.2 34 88-123 363-396 (410)
199 PRK08300 acetaldehyde dehydrog 57.8 14 0.00031 25.5 3.0 31 4-34 69-100 (302)
200 PRK14967 putative methyltransf 57.4 30 0.00065 22.3 4.4 17 18-34 142-158 (223)
201 TIGR00006 S-adenosyl-methyltra 56.4 13 0.00029 25.6 2.7 22 17-38 222-243 (305)
202 cd06811 PLPDE_III_yhfX_like Ty 56.0 22 0.00048 25.3 3.8 39 72-111 9-47 (382)
203 PRK00312 pcm protein-L-isoaspa 55.9 20 0.00044 22.9 3.4 31 4-34 143-174 (212)
204 COG0421 SpeE Spermidine syntha 54.9 25 0.00054 24.0 3.7 34 2-35 146-190 (282)
205 PRK11036 putative S-adenosyl-L 54.5 22 0.00048 23.5 3.5 31 4-34 111-148 (255)
206 PRK10258 biotin biosynthesis p 54.5 59 0.0013 21.3 7.9 31 5-35 103-140 (251)
207 PF01135 PCMT: Protein-L-isoas 53.7 14 0.0003 23.9 2.3 30 5-34 141-171 (209)
208 PRK01683 trans-aconitate 2-met 53.6 26 0.00056 23.1 3.6 31 4-34 92-129 (258)
209 PRK08289 glyceraldehyde-3-phos 53.4 13 0.00028 27.4 2.3 33 4-36 223-259 (477)
210 KOG4300 Predicted methyltransf 53.3 24 0.00052 23.3 3.2 31 5-35 145-182 (252)
211 PF08003 Methyltransf_9: Prote 53.1 18 0.00038 25.2 2.8 29 4-33 181-217 (315)
212 PRK09489 rsmC 16S ribosomal RN 53.0 16 0.00035 25.6 2.7 34 3-36 259-304 (342)
213 TIGR02752 MenG_heptapren 2-hep 52.9 25 0.00055 22.6 3.5 32 4-35 113-151 (231)
214 PTZ00075 Adenosylhomocysteinas 52.3 15 0.00032 27.1 2.5 34 4-37 308-343 (476)
215 TIGR00563 rsmB ribosomal RNA s 52.2 30 0.00066 24.9 4.0 18 17-34 350-367 (426)
216 PF08351 DUF1726: Domain of un 51.9 35 0.00076 19.0 3.5 28 8-35 15-45 (92)
217 PF05724 TPMT: Thiopurine S-me 51.9 18 0.00039 23.6 2.6 32 5-36 116-156 (218)
218 PF05853 DUF849: Prokaryotic p 51.8 73 0.0016 21.6 6.4 48 74-122 125-172 (272)
219 TIGR00080 pimt protein-L-isoas 51.7 19 0.0004 23.2 2.7 31 4-34 145-176 (215)
220 TIGR01934 MenG_MenH_UbiE ubiqu 51.7 29 0.00062 22.0 3.6 33 4-36 105-144 (223)
221 PLN02781 Probable caffeoyl-CoA 50.5 32 0.0007 22.6 3.7 30 4-33 143-176 (234)
222 PLN02490 MPBQ/MSBQ methyltrans 50.3 38 0.00083 23.8 4.1 32 5-36 178-216 (340)
223 PRK13256 thiopurine S-methyltr 50.0 73 0.0016 21.0 5.3 32 5-36 124-164 (226)
224 smart00859 Semialdhyde_dh Semi 49.6 33 0.00072 19.7 3.3 32 5-36 65-100 (122)
225 smart00828 PKS_MT Methyltransf 49.5 22 0.00048 22.8 2.8 33 4-36 66-105 (224)
226 PF13460 NAD_binding_10: NADH( 49.1 30 0.00066 21.1 3.3 35 4-38 59-100 (183)
227 TIGR00138 gidB 16S rRNA methyl 48.4 32 0.00068 21.6 3.3 31 4-34 108-141 (181)
228 PRK15068 tRNA mo(5)U34 methylt 48.2 35 0.00076 23.7 3.7 31 4-34 188-225 (322)
229 PRK14103 trans-aconitate 2-met 47.8 35 0.00076 22.5 3.6 31 4-34 88-125 (255)
230 COG2910 Putative NADH-flavin r 47.6 31 0.00068 22.3 3.1 35 4-38 61-107 (211)
231 PRK08317 hypothetical protein; 47.5 42 0.0009 21.4 3.9 32 4-35 86-124 (241)
232 PF06962 rRNA_methylase: Putat 47.3 18 0.00039 22.0 1.9 20 17-36 74-93 (140)
233 PF13847 Methyltransf_31: Meth 47.3 29 0.00063 20.7 2.9 32 4-35 72-110 (152)
234 COG4122 Predicted O-methyltran 46.2 43 0.00093 22.0 3.7 32 3-34 130-165 (219)
235 COG2519 GCD14 tRNA(1-methylade 46.0 51 0.0011 22.3 4.0 32 4-35 162-195 (256)
236 PRK10901 16S rRNA methyltransf 45.6 40 0.00086 24.4 3.8 18 17-34 354-371 (427)
237 PF07942 N2227: N2227-like pro 45.5 33 0.00071 23.3 3.1 32 5-36 165-203 (270)
238 KOG1253 tRNA methyltransferase 45.3 23 0.00049 26.3 2.5 30 4-33 182-214 (525)
239 PF09377 SBDS_C: SBDS protein 44.2 17 0.00036 21.5 1.5 33 77-109 3-35 (125)
240 TIGR02072 BioC biotin biosynth 44.0 53 0.0011 21.0 3.9 32 4-35 97-135 (240)
241 COG4798 Predicted methyltransf 43.5 34 0.00073 22.4 2.8 18 17-34 148-165 (238)
242 TIGR00308 TRM1 tRNA(guanine-26 43.3 46 0.001 23.7 3.7 32 4-35 113-147 (374)
243 TIGR00518 alaDH alanine dehydr 43.2 24 0.00053 25.0 2.4 34 5-38 230-270 (370)
244 PRK00050 16S rRNA m(4)C1402 me 43.1 29 0.00063 23.9 2.7 22 17-38 218-239 (296)
245 PRK12335 tellurite resistance 42.7 54 0.0012 22.2 3.9 33 3-35 182-223 (287)
246 PRK00121 trmB tRNA (guanine-N( 42.2 68 0.0015 20.4 4.2 18 17-34 138-155 (202)
247 PRK07402 precorrin-6B methylas 42.0 74 0.0016 20.0 4.3 20 16-35 123-142 (196)
248 PLN03075 nicotianamine synthas 41.4 44 0.00095 23.1 3.3 32 4-35 194-233 (296)
249 PLN02366 spermidine synthase 41.3 50 0.0011 22.8 3.6 32 4-35 164-206 (308)
250 PRK15001 SAM-dependent 23S rib 41.2 53 0.0011 23.5 3.8 32 5-36 298-341 (378)
251 COG4013 Uncharacterized protei 40.8 64 0.0014 17.8 4.1 29 97-125 63-91 (91)
252 PF01795 Methyltransf_5: MraW 40.7 19 0.00042 24.9 1.5 22 17-38 223-244 (310)
253 COG2082 CobH Precorrin isomera 40.4 66 0.0014 21.1 3.8 40 74-113 138-179 (210)
254 TIGR00036 dapB dihydrodipicoli 40.3 37 0.0008 22.8 2.8 32 5-36 68-99 (266)
255 PRK13303 L-aspartate dehydroge 40.1 51 0.0011 22.1 3.5 31 4-34 60-91 (265)
256 COG2264 PrmA Ribosomal protein 40.1 54 0.0012 22.7 3.6 35 4-38 228-266 (300)
257 PF06325 PrmA: Ribosomal prote 40.0 32 0.00068 23.7 2.5 35 4-38 224-262 (295)
258 PF01596 Methyltransf_3: O-met 39.5 44 0.00095 21.6 3.0 31 4-34 120-154 (205)
259 COG1867 TRM1 N2,N2-dimethylgua 39.2 47 0.001 23.8 3.2 32 4-35 120-154 (380)
260 PLN02476 O-methyltransferase 38.9 66 0.0014 22.0 3.8 30 4-33 193-226 (278)
261 PRK10148 hypothetical protein; 38.6 90 0.002 18.9 4.1 29 5-33 86-114 (147)
262 TIGR02716 C20_methyl_CrtF C-20 37.8 41 0.00089 22.9 2.8 20 17-36 236-255 (306)
263 TIGR00446 nop2p NOL1/NOP2/sun 37.6 43 0.00094 22.4 2.8 18 17-34 181-198 (264)
264 PRK00811 spermidine synthase; 37.6 69 0.0015 21.7 3.8 31 4-34 149-190 (283)
265 TIGR03215 ac_ald_DH_ac acetald 37.3 48 0.001 22.7 3.0 31 4-34 63-94 (285)
266 PF07655 Secretin_N_2: Secreti 36.9 61 0.0013 18.2 3.0 23 99-121 72-94 (98)
267 TIGR00537 hemK_rel_arch HemK-r 36.6 45 0.00098 20.6 2.7 19 18-36 123-141 (179)
268 PF01564 Spermine_synth: Sperm 36.5 72 0.0016 21.2 3.7 31 5-35 150-191 (246)
269 PRK06922 hypothetical protein; 36.5 68 0.0015 25.0 3.9 18 17-34 519-536 (677)
270 PRK05786 fabG 3-ketoacyl-(acyl 36.5 51 0.0011 21.0 3.0 21 18-38 118-138 (238)
271 PRK01581 speE spermidine synth 36.5 65 0.0014 23.1 3.6 19 17-35 250-268 (374)
272 PTZ00146 fibrillarin; Provisio 36.2 47 0.001 22.9 2.8 29 5-33 202-235 (293)
273 KOG3923 D-aspartate oxidase [A 35.8 21 0.00045 24.9 1.1 33 4-36 182-216 (342)
274 smart00138 MeTrc Methyltransfe 35.7 43 0.00094 22.4 2.6 30 4-33 202-240 (264)
275 PF10369 ALS_ss_C: Small subun 35.6 41 0.00089 17.8 2.0 23 8-30 38-61 (75)
276 PRK00216 ubiE ubiquinone/menaq 35.2 72 0.0016 20.4 3.5 33 4-36 120-159 (239)
277 PF05148 Methyltransf_8: Hypot 35.1 49 0.0011 21.8 2.6 35 4-38 121-161 (219)
278 PRK08324 short chain dehydroge 35.0 69 0.0015 24.7 3.8 35 4-38 497-560 (681)
279 PLN02589 caffeoyl-CoA O-methyl 34.9 79 0.0017 21.1 3.7 30 4-33 155-188 (247)
280 PRK05134 bifunctional 3-demeth 34.8 59 0.0013 21.0 3.1 31 4-34 113-150 (233)
281 PRK14874 aspartate-semialdehyd 34.1 61 0.0013 22.6 3.2 32 4-35 62-94 (334)
282 PF06859 Bin3: Bicoid-interact 33.7 30 0.00066 20.1 1.4 18 17-34 26-43 (110)
283 PRK06274 indolepyruvate oxidor 33.4 76 0.0017 20.1 3.4 30 4-34 66-95 (197)
284 PRK00048 dihydrodipicolinate r 33.3 56 0.0012 21.8 2.8 31 5-36 60-91 (257)
285 TIGR00291 RNA_SBDS rRNA metabo 33.3 73 0.0016 21.2 3.2 37 74-110 97-133 (231)
286 cd04885 ACT_ThrD-I Tandem C-te 33.2 71 0.0015 16.2 2.7 25 5-29 39-63 (68)
287 PLN02968 Probable N-acetyl-gam 33.1 81 0.0017 22.6 3.7 33 4-36 103-135 (381)
288 PTZ00098 phosphoethanolamine N 32.8 57 0.0012 21.8 2.8 32 5-36 117-157 (263)
289 PF06080 DUF938: Protein of un 32.6 53 0.0011 21.4 2.5 36 3-38 100-144 (204)
290 PF13604 AAA_30: AAA domain; P 32.6 1.3E+02 0.0029 19.0 4.7 31 8-38 97-131 (196)
291 TIGR00119 acolac_sm acetolacta 32.2 67 0.0015 19.9 2.8 26 8-34 119-145 (157)
292 COG2524 Predicted transcriptio 32.2 1.1E+02 0.0025 20.9 4.0 45 77-122 220-272 (294)
293 PRK13760 putative RNA-associat 32.1 75 0.0016 21.2 3.1 38 73-110 96-133 (231)
294 PLN02396 hexaprenyldihydroxybe 31.9 69 0.0015 22.3 3.1 31 4-34 197-234 (322)
295 PRK05954 precorrin-8X methylmu 31.8 1.1E+02 0.0024 19.9 3.8 39 74-112 131-171 (203)
296 COG0144 Sun tRNA and rRNA cyto 31.8 53 0.0012 23.2 2.6 18 17-34 270-287 (355)
297 PF02527 GidB: rRNA small subu 31.7 98 0.0021 19.7 3.6 34 3-36 113-149 (184)
298 COG2813 RsmC 16S RNA G1207 met 31.6 79 0.0017 21.9 3.3 35 3-37 35-75 (300)
299 PLN02336 phosphoethanolamine N 31.5 91 0.002 22.8 3.9 31 5-35 332-369 (475)
300 PRK11705 cyclopropane fatty ac 31.3 89 0.0019 22.3 3.7 32 4-35 227-267 (383)
301 PRK10611 chemotaxis methyltran 30.9 48 0.001 22.7 2.2 32 4-36 222-262 (287)
302 PRK08618 ornithine cyclodeamin 30.1 33 0.00071 23.8 1.4 34 4-38 191-224 (325)
303 PRK14901 16S rRNA methyltransf 30.1 62 0.0013 23.5 2.8 17 18-34 367-383 (434)
304 PF01383 CpcD: CpcD/allophycoc 30.1 80 0.0017 15.8 2.4 21 97-119 31-51 (56)
305 PF02570 CbiC: Precorrin-8X me 30.1 95 0.0021 20.1 3.3 40 74-113 129-170 (198)
306 TIGR01296 asd_B aspartate-semi 29.9 75 0.0016 22.3 3.1 32 4-35 60-92 (339)
307 PRK11895 ilvH acetolactate syn 29.7 72 0.0016 19.9 2.7 27 8-35 120-147 (161)
308 PF02875 Mur_ligase_C: Mur lig 29.6 99 0.0021 16.6 3.5 33 4-36 12-49 (91)
309 PF08874 DUF1835: Domain of un 29.6 99 0.0021 17.8 3.2 31 6-36 1-31 (124)
310 PRK06853 indolepyruvate oxidor 29.4 94 0.002 19.7 3.3 29 5-34 68-96 (197)
311 PF08704 GCD14: tRNA methyltra 29.1 64 0.0014 21.6 2.5 31 5-35 113-146 (247)
312 CHL00100 ilvH acetohydroxyacid 29.0 78 0.0017 20.0 2.8 27 8-35 120-147 (174)
313 KOG2198 tRNA cytosine-5-methyl 28.7 62 0.0013 23.2 2.4 18 17-34 278-295 (375)
314 PRK08261 fabG 3-ketoacyl-(acyl 28.5 1.3E+02 0.0028 21.7 4.2 34 5-38 82-126 (450)
315 KOG2924 Deoxyhypusine synthase 28.2 59 0.0013 22.4 2.2 31 4-35 123-155 (366)
316 PRK10875 recD exonuclease V su 28.1 1E+02 0.0023 23.7 3.7 33 6-38 266-302 (615)
317 PRK11933 yebU rRNA (cytosine-C 28.1 65 0.0014 23.8 2.6 17 18-34 225-241 (470)
318 COG0136 Asd Aspartate-semialde 27.9 79 0.0017 22.3 2.8 26 5-30 66-91 (334)
319 COG4017 Uncharacterized protei 27.8 67 0.0015 21.0 2.3 31 3-33 97-128 (254)
320 PRK10792 bifunctional 5,10-met 27.3 46 0.00099 22.9 1.6 33 4-37 201-233 (285)
321 PRK00299 sulfur transfer prote 27.2 1.1E+02 0.0024 16.4 3.3 32 5-36 7-44 (81)
322 PRK08286 cbiC cobalt-precorrin 27.2 1.5E+02 0.0032 19.5 3.8 39 74-112 142-182 (214)
323 PRK15451 tRNA cmo(5)U34 methyl 27.2 83 0.0018 20.7 2.8 20 17-36 146-165 (247)
324 PRK14968 putative methyltransf 26.9 80 0.0017 19.3 2.6 18 17-34 130-147 (188)
325 PF05175 MTS: Methyltransferas 26.3 60 0.0013 20.0 1.9 33 4-36 97-141 (170)
326 smart00843 Ftsk_gamma This dom 26.3 1.1E+02 0.0023 15.9 3.0 41 75-115 5-49 (63)
327 PF13241 NAD_binding_7: Putati 26.1 1.2E+02 0.0026 16.9 3.0 33 4-36 59-92 (103)
328 PF07709 SRR: Seven Residue Re 26.0 45 0.00097 11.4 1.1 11 99-109 3-13 (14)
329 KOG2798 Putative trehalase [Ca 25.9 1.1E+02 0.0024 21.6 3.2 32 5-36 259-297 (369)
330 TIGR01983 UbiG ubiquinone bios 25.8 87 0.0019 20.0 2.7 31 4-34 111-148 (224)
331 PRK08285 cobH precorrin-8X met 25.7 1.5E+02 0.0032 19.5 3.6 38 74-111 137-176 (208)
332 PRK05575 cbiC precorrin-8X met 25.4 1.7E+02 0.0036 19.1 3.8 39 74-112 136-176 (204)
333 PRK08441 oorC 2-oxoglutarate-a 25.4 1.2E+02 0.0026 19.1 3.2 29 4-33 67-95 (183)
334 PF06983 3-dmu-9_3-mt: 3-demet 25.4 1.2E+02 0.0026 17.5 3.0 27 4-30 71-97 (116)
335 PF14258 DUF4350: Domain of un 25.4 1.1E+02 0.0023 15.6 2.7 19 16-34 51-69 (70)
336 COG3288 PntA NAD/NADP transhyd 25.2 1.3E+02 0.0027 21.3 3.4 59 4-65 243-308 (356)
337 PRK06264 cbiC precorrin-8X met 25.2 1.7E+02 0.0037 19.2 3.8 39 74-112 137-177 (210)
338 PRK14175 bifunctional 5,10-met 25.2 49 0.0011 22.7 1.5 32 4-37 200-232 (286)
339 PF11288 DUF3089: Protein of u 24.7 87 0.0019 20.4 2.5 26 97-122 75-100 (207)
340 PRK05953 precorrin-8X methylmu 24.7 1.5E+02 0.0034 19.4 3.6 39 74-112 129-169 (208)
341 KOG0256 1-aminocyclopropane-1- 24.7 2.7E+02 0.0058 20.7 4.9 56 56-111 222-287 (471)
342 PF06014 DUF910: Bacterial pro 24.6 33 0.00071 17.7 0.4 17 20-36 6-22 (62)
343 PRK06718 precorrin-2 dehydroge 24.6 1.9E+02 0.0041 18.5 4.0 32 4-35 69-100 (202)
344 PRK13301 putative L-aspartate 24.5 1.3E+02 0.0028 20.6 3.3 32 3-34 60-92 (267)
345 COG2921 Uncharacterized conser 24.5 1.4E+02 0.0031 16.7 3.2 22 97-119 68-89 (90)
346 cd01079 NAD_bind_m-THF_DH NAD 24.4 36 0.00079 22.0 0.7 34 4-37 125-158 (197)
347 TIGR01447 recD exodeoxyribonuc 24.1 1.5E+02 0.0032 22.8 3.9 34 5-38 259-296 (586)
348 PRK03612 spermidine synthase; 24.1 1.3E+02 0.0028 22.5 3.6 33 3-35 371-415 (521)
349 PHA01735 hypothetical protein 23.9 1.2E+02 0.0026 16.0 2.4 14 100-113 33-46 (76)
350 TIGR01745 asd_gamma aspartate- 23.8 1.4E+02 0.0029 21.5 3.4 32 4-35 63-97 (366)
351 PF02353 CMAS: Mycolic acid cy 23.7 82 0.0018 21.4 2.3 31 5-35 127-166 (273)
352 PRK12428 3-alpha-hydroxysteroi 23.6 1.5E+02 0.0031 19.2 3.5 35 4-38 47-99 (241)
353 COG3963 Phospholipid N-methylt 23.6 1.8E+02 0.004 18.6 3.6 31 5-35 117-156 (194)
354 PRK08328 hypothetical protein; 23.1 1.3E+02 0.0029 19.7 3.2 13 4-16 117-129 (231)
355 PF11079 YqhG: Bacterial prote 23.0 79 0.0017 21.4 2.1 23 13-35 83-105 (260)
356 PF14237 DUF4339: Domain of un 22.9 82 0.0018 14.6 1.7 18 77-94 16-33 (45)
357 PRK14902 16S rRNA methyltransf 22.9 93 0.002 22.6 2.6 18 17-34 361-378 (444)
358 COG2256 MGS1 ATPase related to 22.7 3.2E+02 0.007 20.2 5.7 21 97-117 84-104 (436)
359 COG0656 ARA1 Aldo/keto reducta 22.6 2.3E+02 0.005 19.5 4.3 35 74-108 120-154 (280)
360 COG2227 UbiG 2-polyprenyl-3-me 22.3 1.8E+02 0.0039 19.6 3.6 31 4-34 123-160 (243)
361 PRK11172 dkgB 2,5-diketo-D-glu 22.3 2.3E+02 0.0051 18.9 4.3 35 74-108 108-142 (267)
362 PRK14581 hmsF outer membrane N 22.0 3.2E+02 0.007 21.5 5.3 44 74-124 71-115 (672)
363 PRK00304 hypothetical protein; 21.8 80 0.0017 17.0 1.6 24 97-124 32-56 (75)
364 PRK09912 L-glyceraldehyde 3-ph 21.7 2.9E+02 0.0063 19.3 5.1 39 73-111 146-184 (346)
365 PRK00979 tetrahydromethanopter 21.6 3E+02 0.0064 19.4 5.3 48 74-121 81-128 (308)
366 KOG1661 Protein-L-isoaspartate 21.5 1.3E+02 0.0029 20.0 2.8 30 5-34 162-192 (237)
367 KOG3870 Uncharacterized conser 21.5 1E+02 0.0023 22.4 2.5 41 73-113 305-353 (434)
368 PRK04966 hypothetical protein; 21.5 82 0.0018 16.8 1.6 10 115-124 48-57 (72)
369 PF00899 ThiF: ThiF family; I 21.4 1.3E+02 0.0028 17.6 2.7 26 5-30 92-118 (135)
370 PRK14192 bifunctional 5,10-met 21.4 61 0.0013 22.2 1.4 33 4-37 201-233 (283)
371 KOG3840 Uncharaterized conserv 21.4 90 0.0019 21.9 2.1 34 74-109 149-182 (438)
372 TIGR00740 methyltransferase, p 21.2 1.2E+02 0.0025 19.8 2.7 19 17-35 143-161 (239)
373 COG5459 Predicted rRNA methyla 21.1 1.1E+02 0.0025 22.1 2.6 20 17-36 207-226 (484)
374 PF01728 FtsJ: FtsJ-like methy 21.1 1.1E+02 0.0024 18.8 2.5 17 18-34 122-138 (181)
375 COG0289 DapB Dihydrodipicolina 20.9 1.1E+02 0.0024 20.8 2.5 33 5-37 69-101 (266)
376 TIGR01546 GAPDH-II_archae glyc 20.8 96 0.0021 21.9 2.2 35 4-38 74-109 (333)
377 COG2085 Predicted dinucleotide 20.5 1.8E+02 0.0039 19.1 3.3 27 96-123 67-93 (211)
378 TIGR03855 NAD_NadX aspartate d 20.5 1.8E+02 0.0039 19.2 3.4 31 4-34 36-67 (229)
379 TIGR02853 spore_dpaA dipicolin 20.4 1.4E+02 0.0031 20.4 3.0 33 4-36 208-241 (287)
380 cd04906 ACT_ThrD-I_1 First of 20.4 1.6E+02 0.0035 15.7 2.7 28 5-32 41-69 (85)
381 TIGR00091 tRNA (guanine-N(7)-) 20.2 1.5E+02 0.0031 18.7 2.9 19 16-34 113-131 (194)
382 PRK14904 16S rRNA methyltransf 20.2 1.1E+02 0.0024 22.2 2.6 19 17-35 359-377 (445)
383 PRK14712 conjugal transfer nic 20.2 6.3E+02 0.014 22.6 7.3 31 8-38 934-968 (1623)
384 smart00361 RRM_1 RNA recogniti 20.1 1.1E+02 0.0024 15.6 1.9 20 99-118 47-66 (70)
No 1
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=99.85 E-value=2.2e-20 Score=122.01 Aligned_cols=124 Identities=48% Similarity=0.794 Sum_probs=108.9
Q ss_pred CCCceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCC-CCCcccHHHHHhccceeeeeee-cccccchHHHHH
Q 035717 1 CFPEGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDE-PKGIHNLTRLILKQVRMEGFLV-SDYNHLYPKFLE 78 (125)
Q Consensus 1 ~~~~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 78 (125)
+||.|+|+.||++|++.+++.+..|+.+||++.+|..+.+|..+ +..+..+..++.+++++.|+.+ ..+....++..+
T Consensus 215 a~P~GIDvyfeNVGg~v~DAv~~~ln~~aRi~~CG~IS~YN~~~~~~gp~~l~~l~~kr~~v~Gfiv~~~~~~~~~e~~~ 294 (340)
T COG2130 215 ACPKGIDVYFENVGGEVLDAVLPLLNLFARIPVCGAISQYNAPELPPGPRRLPLLMAKRLRVQGFIVASDYDQRFPEALR 294 (340)
T ss_pred HCCCCeEEEEEcCCchHHHHHHHhhccccceeeeeehhhcCCCCCCCCcchhhHHHhhhheeEEEEechhhhhhhHHHHH
Confidence 58999999999999999999999999999999999999887653 3345566677888999999998 455555668999
Q ss_pred HHHHHHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEEecC
Q 035717 79 MIIPHIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAAVAS 124 (125)
Q Consensus 79 ~~~~l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~~~ 124 (125)
++..|+.+|+|+...+..=.||.+++||..+-++++.||+|+++.+
T Consensus 295 ~l~~wv~~GKi~~~eti~dGlEnaP~Af~gLl~G~N~GK~vvKv~~ 340 (340)
T COG2130 295 ELGGWVKEGKIQYRETIVDGLENAPEAFIGLLSGKNFGKLVVKVAD 340 (340)
T ss_pred HHHHHHHcCceeeEeeehhhhhccHHHHHHHhcCCccceEEEEecC
Confidence 9999999999999887777899999999999999999999998764
No 2
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=99.83 E-value=1.4e-19 Score=123.46 Aligned_cols=123 Identities=67% Similarity=1.032 Sum_probs=98.1
Q ss_pred CceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHH
Q 035717 3 PEGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIP 82 (125)
Q Consensus 3 ~~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (125)
++|+|++||++|+..+..++++++++|+++.+|..+......+....+...++.+++++.|++.+.+.....+.++++++
T Consensus 226 ~~gvD~v~d~vG~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~~~~~ 305 (348)
T PLN03154 226 PEGIDIYFDNVGGDMLDAALLNMKIHGRIAVCGMVSLNSLSASQGIHNLYNLISKRIRMQGFLQSDYLHLFPQFLENVSR 305 (348)
T ss_pred CCCcEEEEECCCHHHHHHHHHHhccCCEEEEECccccCCCCCCCCcccHHHHhhccceEEEEEHHHHHHHHHHHHHHHHH
Confidence 45899999999998899999999999999999975432100000112445677889999998765443334567889999
Q ss_pred HHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEEecCC
Q 035717 83 HIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAAVASE 125 (125)
Q Consensus 83 l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~~~~ 125 (125)
++++|++++.+..+|+|+++++||+.+++++..||+||++.+|
T Consensus 306 l~~~G~l~~~~~~~~~L~~~~~A~~~l~~g~~~GKvVl~~~~~ 348 (348)
T PLN03154 306 YYKQGKIVYIEDMSEGLESAPAALVGLFSGKNVGKQVIRVAKE 348 (348)
T ss_pred HHHCCCccCceecccCHHHHHHHHHHHHcCCCCceEEEEecCC
Confidence 9999999988777799999999999999999999999999775
No 3
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=99.80 E-value=4.8e-19 Score=115.53 Aligned_cols=125 Identities=66% Similarity=1.161 Sum_probs=113.9
Q ss_pred CCCceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHH
Q 035717 1 CFPEGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMI 80 (125)
Q Consensus 1 ~~~~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
++|+|+|+.||.+|+..+++.+..|+.+||++.+|..+.+|.+.+....++...+.|++++.|+.+..+.+..++.++.+
T Consensus 219 ~~P~GIDiYfeNVGG~~lDavl~nM~~~gri~~CG~ISqYN~~~~~~~~~l~~ii~Kr~~iqgflv~d~~d~~~k~ld~l 298 (343)
T KOG1196|consen 219 CFPEGIDIYFENVGGKMLDAVLLNMNLHGRIAVCGMISQYNLENPEGLHNLSTIIYKRIRIQGFLVSDYLDKYPKFLDFL 298 (343)
T ss_pred hCCCcceEEEeccCcHHHHHHHHhhhhccceEeeeeehhccccCCccccchhhheeeeEEeeeEEeechhhhhHHHHHHH
Confidence 57999999999999999999999999999999999999888766654557778889999999999888888889999999
Q ss_pred HHHHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEEecCC
Q 035717 81 IPHIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAAVASE 125 (125)
Q Consensus 81 ~~l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~~~~ 125 (125)
..++++|+|+...+..-.|+..++|+.-|.++++.||.++.+..|
T Consensus 299 ~~~ikegKI~y~edi~~Glen~P~A~vglf~GkNvGKqiv~va~E 343 (343)
T KOG1196|consen 299 LPYIKEGKITYVEDIADGLENGPSALVGLFHGKNVGKQLVKVARE 343 (343)
T ss_pred HHHHhcCceEEehhHHHHHhccHHHHHHHhccCcccceEEEeecC
Confidence 999999999998888789999999999999999999999998755
No 4
>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A.
Probab=99.77 E-value=7.1e-19 Score=104.15 Aligned_cols=107 Identities=26% Similarity=0.237 Sum_probs=71.2
Q ss_pred CCceeeEEEeCCc--hHHH-HHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccc--cchHHH
Q 035717 2 FPEGIDIYFENVG--GKML-DAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYN--HLYPKF 76 (125)
Q Consensus 2 ~~~g~Dvv~d~~g--~~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 76 (125)
.++++|+|||++| ++.+ ..++++| ++|+++.++. . ........+...+....+.... ....+.
T Consensus 16 ~~~~~D~ViD~~g~~~~~~~~~~~~~l-~~G~~v~i~~-~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (127)
T PF13602_consen 16 GPGGVDVVIDTVGQTGESLLDASRKLL-PGGRVVSIGG-D----------LPSFARRLKGRSIRYSFLFSVDPNAIRAEA 83 (127)
T ss_dssp TTS-EEEEEESS-CCHHHCGGGCCCTE-EEEEEEEE-S-H----------HHHHHHHHHCHHCEEECCC-H--HHHHHHH
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHC-CCCEEEEECC-c----------ccchhhhhcccceEEEEEEecCCCchHHHH
Confidence 3679999999999 7665 7788888 9999999873 1 0111111222333333222111 124566
Q ss_pred HHHHHHHHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEE
Q 035717 77 LEMIIPHIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVA 120 (125)
Q Consensus 77 ~~~~~~l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi 120 (125)
++++.+++++|+++|.+..+|+++++.+||+++++++..||+||
T Consensus 84 l~~l~~l~~~G~l~~~i~~~f~l~~~~~A~~~l~~~~~~GKvVl 127 (127)
T PF13602_consen 84 LEELAELVAEGKLKPPIDRVFPLEEAPEAHERLESGHARGKVVL 127 (127)
T ss_dssp HHHHHHHHHTTSS---EEEEEEGGGHHHHHHHHHCT--SSEEEE
T ss_pred HHHHHHHHHCCCeEEeeccEECHHHHHHHHHHHHhCCCCCeEeC
Confidence 99999999999999999988999999999999999999999987
No 5
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=99.77 E-value=4.5e-18 Score=109.10 Aligned_cols=118 Identities=17% Similarity=0.194 Sum_probs=96.1
Q ss_pred CceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccc---hHHHHHH
Q 035717 3 PEGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHL---YPKFLEM 79 (125)
Q Consensus 3 ~~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 79 (125)
++|||+++|++|.+++..++.||++.|.+|.+|..++ ...++++..+..+++.+..-.+..|.+. ......+
T Consensus 213 gKGVd~vyDsvG~dt~~~sl~~Lk~~G~mVSfG~asg-----l~~p~~l~~ls~k~l~lvrpsl~gYi~g~~el~~~v~r 287 (336)
T KOG1197|consen 213 GKGVDAVYDSVGKDTFAKSLAALKPMGKMVSFGNASG-----LIDPIPLNQLSPKALQLVRPSLLGYIDGEVELVSYVAR 287 (336)
T ss_pred CCCceeeeccccchhhHHHHHHhccCceEEEeccccC-----CCCCeehhhcChhhhhhccHhhhcccCCHHHHHHHHHH
Confidence 6799999999999999999999999999999998764 2334566667777777655433333221 2234567
Q ss_pred HHHHHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEEecCC
Q 035717 80 IIPHIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAAVASE 125 (125)
Q Consensus 80 ~~~l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~~~~ 125 (125)
+..++.+|.+++.+..+|||+++.+|+..+++..+.||+++.+.+|
T Consensus 288 l~alvnsg~lk~~I~~~ypls~vadA~~diesrktvGkvlLlp~~~ 333 (336)
T KOG1197|consen 288 LFALVNSGHLKIHIDHVYPLSKVADAHADIESRKTVGKVLLLPGPE 333 (336)
T ss_pred HHHHhhcCccceeeeeecchHHHHHHHHHHHhhhccceEEEeCCcc
Confidence 8889999999999999999999999999999999999999998765
No 6
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=99.75 E-value=2.2e-17 Score=110.75 Aligned_cols=109 Identities=23% Similarity=0.266 Sum_probs=94.7
Q ss_pred eeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHHHHH
Q 035717 6 IDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIPHIK 85 (125)
Q Consensus 6 ~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 85 (125)
+|+++|+++..+++.++++|+++|+++.+|.... .+....+...++.+++++.|+..++..+ +++++++..
T Consensus 230 ~d~ii~tv~~~~~~~~l~~l~~~G~~v~vG~~~~----~~~~~~~~~~li~~~~~i~GS~~g~~~d-----~~e~l~f~~ 300 (339)
T COG1064 230 ADAIIDTVGPATLEPSLKALRRGGTLVLVGLPGG----GPIPLLPAFLLILKEISIVGSLVGTRAD-----LEEALDFAA 300 (339)
T ss_pred CcEEEECCChhhHHHHHHHHhcCCEEEEECCCCC----cccCCCCHHHhhhcCeEEEEEecCCHHH-----HHHHHHHHH
Confidence 8999999996689999999999999999998631 1222345667889999999999887766 999999999
Q ss_pred cCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEEec
Q 035717 86 WAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAAVA 123 (125)
Q Consensus 86 ~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~~ 123 (125)
+|+++|.+...++++|+++||++|++++..||+||++.
T Consensus 301 ~g~Ikp~i~e~~~l~~in~A~~~m~~g~v~gR~Vi~~~ 338 (339)
T COG1064 301 EGKIKPEILETIPLDEINEAYERMEKGKVRGRAVIDMS 338 (339)
T ss_pred hCCceeeEEeeECHHHHHHHHHHHHcCCeeeEEEecCC
Confidence 99999998655999999999999999999999999875
No 7
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=99.72 E-value=3e-16 Score=106.54 Aligned_cols=120 Identities=63% Similarity=1.040 Sum_probs=92.8
Q ss_pred CceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHH
Q 035717 3 PEGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIP 82 (125)
Q Consensus 3 ~~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (125)
++|+|++||++|+..+..++++++++|+++.+|..+...........+...+..+++++.+++...+.....+.++++++
T Consensus 219 ~~gvd~v~d~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~ 298 (338)
T cd08295 219 PNGIDIYFDNVGGKMLDAVLLNMNLHGRIAACGMISQYNLEWPEGVRNLLNIIYKRVKIQGFLVGDYLHRYPEFLEEMSG 298 (338)
T ss_pred CCCcEEEEECCCHHHHHHHHHHhccCcEEEEecccccCCCCCCCCccCHHHHhhccceeeEEEehhhHHHHHHHHHHHHH
Confidence 35899999999998899999999999999999865432110000112334566778888887665544334567889999
Q ss_pred HHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEEe
Q 035717 83 HIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 83 l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 122 (125)
++++|++++....+|+++++.+|++.+++++..||+++++
T Consensus 299 l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~GkvVl~~ 338 (338)
T cd08295 299 YIKEGKLKYVEDIADGLESAPEAFVGLFTGSNIGKQVVKV 338 (338)
T ss_pred HHHCCCeEceeecccCHHHHHHHHHHHhcCCCCceEEEEC
Confidence 9999999987666799999999999999998899999874
No 8
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=99.69 E-value=6.4e-16 Score=104.31 Aligned_cols=120 Identities=43% Similarity=0.734 Sum_probs=91.9
Q ss_pred CceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCC-CcccHHHHHhccceeeeeeecccccchHHHHHHHH
Q 035717 3 PEGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPK-GIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMII 81 (125)
Q Consensus 3 ~~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (125)
++|+|++||++|+..+..++++++++|+++.+|..+..+..... .......+..+++++.+++...+.....+.+++++
T Consensus 209 ~~gvd~vld~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 288 (329)
T cd08294 209 PDGIDCYFDNVGGEFSSTVLSHMNDFGRVAVCGSISTYNDKEPKKGPYVQETIIFKQLKMEGFIVYRWQDRWPEALKQLL 288 (329)
T ss_pred CCCcEEEEECCCHHHHHHHHHhhccCCEEEEEcchhccCCCCCCcCcccHHHHhhhcceEEEEEhhhhHHHHHHHHHHHH
Confidence 46899999999998899999999999999999864322111110 12233456678888888765443233456788999
Q ss_pred HHHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEEe
Q 035717 82 PHIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 82 ~l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 122 (125)
+++++|++++....+|+++++++|++.+.+++..||+++++
T Consensus 289 ~l~~~g~i~~~~~~~~~l~~~~~A~~~~~~~~~~gkvvv~~ 329 (329)
T cd08294 289 KWIKEGKLKYREHVTEGFENMPQAFIGMLKGENTGKAIVKV 329 (329)
T ss_pred HHHHCCCCcCCcccccCHHHHHHHHHHHHcCCCCCeEEEeC
Confidence 99999999987656699999999999999999899999864
No 9
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=99.68 E-value=1.5e-15 Score=102.65 Aligned_cols=118 Identities=39% Similarity=0.649 Sum_probs=90.1
Q ss_pred CceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCC-CCcccHHHHHhccceeeeeeecccc-cchHHHHHHH
Q 035717 3 PEGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEP-KGIHNLTRLILKQVRMEGFLVSDYN-HLYPKFLEMI 80 (125)
Q Consensus 3 ~~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 80 (125)
++|+|++||++|+..+..++++++++|+++.+|..+..+.... ........+..+++++.+++...+. ....+.++++
T Consensus 205 ~~gvdvv~d~~G~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 284 (325)
T TIGR02825 205 PDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAISTYNRTGPLPPGPPPEIVIYQELRMEGFIVNRWQGEVRQKALKEL 284 (325)
T ss_pred CCCeEEEEECCCHHHHHHHHHHhCcCcEEEEecchhhcccCCCCCCCcchHHHhhhcceEeEEEehhhhhhhhHHHHHHH
Confidence 4589999999999888999999999999999987542211001 1111233456678888887654332 2235678899
Q ss_pred HHHHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEE
Q 035717 81 IPHIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVA 120 (125)
Q Consensus 81 ~~l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi 120 (125)
++++++|++++....+|+++++++|++.+++++..||+|+
T Consensus 285 ~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~gkvVv 324 (325)
T TIGR02825 285 LKWVLEGKIQYKEYVIEGFENMPAAFMGMLKGENLGKTIV 324 (325)
T ss_pred HHHHHCCCcccceeccccHHHHHHHHHHHhcCCCCCeEEe
Confidence 9999999999887777999999999999999998999986
No 10
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=99.67 E-value=1.3e-15 Score=103.13 Aligned_cols=114 Identities=26% Similarity=0.351 Sum_probs=89.8
Q ss_pred ceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeeccc-ccchHHHHHHHHH
Q 035717 4 EGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDY-NHLYPKFLEMIIP 82 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (125)
+|+|+|||++|++++..++++|+++|+++.+|..++ .+....+...+..+.+.+.|+..... ++...+.++++.+
T Consensus 210 ~gvDvv~D~vG~~~~~~~l~~l~~~G~lv~ig~~~g----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~ 285 (326)
T COG0604 210 KGVDVVLDTVGGDTFAASLAALAPGGRLVSIGALSG----GPPVPLNLLPLLGKRLTLRGVTLGSRDPEALAEALAELFD 285 (326)
T ss_pred CCceEEEECCCHHHHHHHHHHhccCCEEEEEecCCC----CCccccCHHHHhhccEEEEEecceecchHHHHHHHHHHHH
Confidence 489999999999999999999999999999998663 11223345667778888888765433 2345677899999
Q ss_pred HHHcCceeeeeecccchhHH--HHHHHHHhcCCCcCeEEEEe
Q 035717 83 HIKWAKIVYIEDTAEGLESA--LAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 83 l~~~g~i~~~~~~~~~l~~~--~~a~~~~~~~~~~gkvvi~~ 122 (125)
++++|.+++.+..+|+++|. ..++..+. ++..||+||++
T Consensus 286 ~~~~g~l~~~i~~~~~l~e~~~a~a~~~~~-~~~~GKvvl~~ 326 (326)
T COG0604 286 LLASGKLKPVIDRVYPLAEAPAAAAHLLLE-RRTTGKVVLKV 326 (326)
T ss_pred HHHcCCCcceeccEechhhhHHHHHHHHcc-cCCcceEEEeC
Confidence 99999999999988999995 44455444 58899999974
No 11
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=99.67 E-value=8.2e-16 Score=105.94 Aligned_cols=107 Identities=18% Similarity=0.154 Sum_probs=87.8
Q ss_pred eeeEEEeCCchH-HHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHHH
Q 035717 5 GIDIYFENVGGK-MLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIPH 83 (125)
Q Consensus 5 g~Dvv~d~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (125)
++|++||++|+. .+..++++++++|+++.+|.... + ..++...++.+++++.|++.+.. ..+.+++++
T Consensus 242 ~~D~vid~~G~~~~~~~~~~~l~~~G~iv~vG~~~~-----~-~~~~~~~~~~~~~~i~g~~~~~~-----~~~~~~~~l 310 (375)
T PLN02178 242 TMDFIIDTVSAEHALLPLFSLLKVSGKLVALGLPEK-----P-LDLPIFPLVLGRKMVGGSQIGGM-----KETQEMLEF 310 (375)
T ss_pred CCcEEEECCCcHHHHHHHHHhhcCCCEEEEEccCCC-----C-CccCHHHHHhCCeEEEEeCccCH-----HHHHHHHHH
Confidence 689999999976 68999999999999999986431 1 23355567788999999875432 348889999
Q ss_pred HHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEEec
Q 035717 84 IKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAAVA 123 (125)
Q Consensus 84 ~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~~ 123 (125)
+++|++++.+. +|+|+|+++||+.+++++..||+|+++.
T Consensus 311 ~~~g~i~~~i~-~~~l~~~~~A~~~~~~~~~~gkvvi~~~ 349 (375)
T PLN02178 311 CAKHKIVSDIE-LIKMSDINSAMDRLAKSDVRYRFVIDVA 349 (375)
T ss_pred HHhCCCcccEE-EEeHHHHHHHHHHHHcCCCceEEEEEec
Confidence 99999998764 5999999999999999988899999873
No 12
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=99.66 E-value=1.7e-15 Score=103.68 Aligned_cols=108 Identities=18% Similarity=0.165 Sum_probs=88.4
Q ss_pred eeeEEEeCCch-HHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHHH
Q 035717 5 GIDIYFENVGG-KMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIPH 83 (125)
Q Consensus 5 g~Dvv~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (125)
++|++||++|. ..+..++++++++|+++.+|.... ...++...++.++.++.|++.+.. ..+++++++
T Consensus 244 ~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~------~~~~~~~~~~~~~~~i~g~~~~~~-----~~~~~~~~~ 312 (357)
T PLN02514 244 SLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINT------PLQFVTPMLMLGRKVITGSFIGSM-----KETEEMLEF 312 (357)
T ss_pred CCcEEEECCCchHHHHHHHHHhccCCEEEEECCCCC------CCcccHHHHhhCCcEEEEEecCCH-----HHHHHHHHH
Confidence 68999999995 578899999999999999997531 123445567788999999876443 248889999
Q ss_pred HHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEEecC
Q 035717 84 IKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAAVAS 124 (125)
Q Consensus 84 ~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~~~ 124 (125)
+++|++.+.+. +|+++|+.+||+.+++++..||++|.++.
T Consensus 313 ~~~g~l~~~i~-~~~l~~~~~A~~~~~~~~~~gk~v~~~~~ 352 (357)
T PLN02514 313 CKEKGLTSMIE-VVKMDYVNTAFERLEKNDVRYRFVVDVAG 352 (357)
T ss_pred HHhCCCcCcEE-EEcHHHHHHHHHHHHcCCCceeEEEEccc
Confidence 99999987664 69999999999999999888999998753
No 13
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=99.66 E-value=2e-15 Score=102.00 Aligned_cols=113 Identities=22% Similarity=0.319 Sum_probs=90.3
Q ss_pred ceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeeccccc-chHHHHHHHHH
Q 035717 4 EGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNH-LYPKFLEMIIP 82 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (125)
+|+|++||++|+......+++++++|+++.+|..+..+ ....+...++.+++++.+++...+.. ...+.++++++
T Consensus 211 ~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (324)
T cd08291 211 LNATIFFDAVGGGLTGQILLAMPYGSTLYVYGYLSGKL----DEPIDPVDLIFKNKSIEGFWLTTWLQKLGPEVVKKLKK 286 (324)
T ss_pred CCCcEEEECCCcHHHHHHHHhhCCCCEEEEEEecCCCC----cccCCHHHHhhcCcEEEEEEHHHhhcccCHHHHHHHHH
Confidence 58999999999988888999999999999998754311 11134455678899999988655422 23566888899
Q ss_pred HHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEE
Q 035717 83 HIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAA 121 (125)
Q Consensus 83 l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~ 121 (125)
+++ |.+++.+..+|+++|+.+||+++.+++..||++|.
T Consensus 287 ~~~-~~~~~~i~~~~~l~~~~~a~~~~~~~~~~Gkvv~~ 324 (324)
T cd08291 287 LVK-TELKTTFASRYPLALTLEAIAFYSKNMSTGKKLLI 324 (324)
T ss_pred HHh-CccccceeeEEcHHHHHHHHHHHHhCCCCCeEEeC
Confidence 988 99998888789999999999999999889999873
No 14
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=99.66 E-value=2.5e-15 Score=102.44 Aligned_cols=116 Identities=14% Similarity=0.091 Sum_probs=87.1
Q ss_pred ceee-EEEeCCchH-HHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHH
Q 035717 4 EGID-IYFENVGGK-MLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMII 81 (125)
Q Consensus 4 ~g~D-vv~d~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (125)
.++| ++|||+|+. .+..++++++++|+++.+|..... .......+..++.+++++.|++.+.......+.+++++
T Consensus 227 ~~~d~~v~d~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~---~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~ 303 (347)
T PRK10309 227 LRFDQLILETAGVPQTVELAIEIAGPRAQLALVGTLHHD---LHLTSATFGKILRKELTVIGSWMNYSSPWPGQEWETAS 303 (347)
T ss_pred CCCCeEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCC---cccChhhhhHHhhcCcEEEEEeccccCCcchhHHHHHH
Confidence 4788 999999974 789999999999999999975421 01111122356778999999876432111234588899
Q ss_pred HHHHcCceee--eeecccchhHHHHHHHHHhcCCCcCeEEEEe
Q 035717 82 PHIKWAKIVY--IEDTAEGLESALAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 82 ~l~~~g~i~~--~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 122 (125)
+++++|++.+ .+..+|+|+|+++|++.+.+++..||+++.+
T Consensus 304 ~~~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~ 346 (347)
T PRK10309 304 RLLTERKLSLEPLIAHRGSFESFAQAVRDLAGNPMPGKVLLQI 346 (347)
T ss_pred HHHHcCCCCchhheEEEeeHHHHHHHHHHHhcCCcceEEEEeC
Confidence 9999999863 4555699999999999999988889999975
No 15
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=99.65 E-value=2.4e-15 Score=103.10 Aligned_cols=107 Identities=17% Similarity=0.130 Sum_probs=85.6
Q ss_pred eeeEEEeCCchH-HHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHHH
Q 035717 5 GIDIYFENVGGK-MLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIPH 83 (125)
Q Consensus 5 g~Dvv~d~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (125)
++|++||++|.. .++.++++++++|+++.+|.... + ..++...++.++..+.|++.+.. ..+++++++
T Consensus 247 ~~D~vid~~g~~~~~~~~~~~l~~~G~iv~vG~~~~-----~-~~~~~~~~~~~~~~i~g~~~~~~-----~~~~~~~~l 315 (360)
T PLN02586 247 TMDYIIDTVSAVHALGPLLGLLKVNGKLITLGLPEK-----P-LELPIFPLVLGRKLVGGSDIGGI-----KETQEMLDF 315 (360)
T ss_pred CCCEEEECCCCHHHHHHHHHHhcCCcEEEEeCCCCC-----C-CccCHHHHHhCCeEEEEcCcCCH-----HHHHHHHHH
Confidence 689999999974 68899999999999999986431 1 12344556667777777765432 348899999
Q ss_pred HHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEEec
Q 035717 84 IKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAAVA 123 (125)
Q Consensus 84 ~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~~ 123 (125)
+++|++++.+. +|+|+|+++||+.+.+++..||+++.+.
T Consensus 316 i~~g~i~~~~~-~~~l~~~~~A~~~~~~~~~~gkvvi~~~ 354 (360)
T PLN02586 316 CAKHNITADIE-LIRMDEINTAMERLAKSDVRYRFVIDVA 354 (360)
T ss_pred HHhCCCCCcEE-EEeHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence 99999997664 6999999999999999988899999863
No 16
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=99.64 E-value=2.1e-15 Score=101.46 Aligned_cols=107 Identities=16% Similarity=0.226 Sum_probs=83.5
Q ss_pred ceeeEEEeCCchH-HHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHH
Q 035717 4 EGIDIYFENVGGK-MLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIP 82 (125)
Q Consensus 4 ~g~Dvv~d~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (125)
.|+|+||||+|+. .++.++++++++|+++.+|.... + ..++...++.+++++.+...+. .+.++++++
T Consensus 199 ~g~Dvvid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~-----~-~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~ 267 (308)
T TIGR01202 199 RDYRAIYDASGDPSLIDTLVRRLAKGGEIVLAGFYTE-----P-VNFDFVPAFMKEARLRIAAEWQ-----PGDLHAVRE 267 (308)
T ss_pred CCCCEEEECCCCHHHHHHHHHhhhcCcEEEEEeecCC-----C-cccccchhhhcceEEEEecccc-----hhHHHHHHH
Confidence 5799999999985 58999999999999999997431 1 1233445667888888764322 234899999
Q ss_pred HHHcCceeee--eecccchhHHHHHHHHHhcCCCcCeEEEE
Q 035717 83 HIKWAKIVYI--EDTAEGLESALAARVGLFSGRNLGKQVAA 121 (125)
Q Consensus 83 l~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~gkvvi~ 121 (125)
++++|++.+. +..+|+|+|+++||+.+.+++..+|++|+
T Consensus 268 l~~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~~~Kv~~~ 308 (308)
T TIGR01202 268 LIESGALSLDGLITHQRPASDAAEAYMTAFSDPDCLKMILD 308 (308)
T ss_pred HHHcCCCChhhccceeecHHHHHHHHHHHhcCcCceEEEeC
Confidence 9999999874 44459999999999998877777899874
No 17
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=99.63 E-value=6.3e-15 Score=100.40 Aligned_cols=106 Identities=14% Similarity=0.106 Sum_probs=85.5
Q ss_pred eeeEEEeCCchH-HHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHHH
Q 035717 5 GIDIYFENVGGK-MLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIPH 83 (125)
Q Consensus 5 g~Dvv~d~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (125)
++|++||++|+. .+..++++++++|+++.+|.... ...+++..++.+++++.|++... ..+++++++
T Consensus 235 ~~D~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~------~~~~~~~~~~~k~~~i~g~~~~~------~~~~~~~~l 302 (343)
T PRK09880 235 YFDVSFEVSGHPSSINTCLEVTRAKGVMVQVGMGGA------PPEFPMMTLIVKEISLKGSFRFT------EEFNTAVSW 302 (343)
T ss_pred CCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCC------CCccCHHHHHhCCcEEEEEeecc------ccHHHHHHH
Confidence 599999999974 68899999999999999996431 12345566778899999876421 248899999
Q ss_pred HHcCceeee--eecccchhHHHHHHHHHhcCCCcCeEEEEe
Q 035717 84 IKWAKIVYI--EDTAEGLESALAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 84 ~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 122 (125)
+++|++++. +..+|+++|+++|++.+.+++..||++|.+
T Consensus 303 ~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~ 343 (343)
T PRK09880 303 LANGVINPLPLLSAEYPFTDLEEALIFAGDKTQAAKVQLVF 343 (343)
T ss_pred HHcCCCCchhheEEEEEHHHHHHHHHHHhcCCCceEEEEeC
Confidence 999999863 445699999999999999887789999874
No 18
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=99.63 E-value=1.1e-14 Score=99.02 Aligned_cols=120 Identities=36% Similarity=0.586 Sum_probs=84.2
Q ss_pred CceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCC-Cccc--HHHH-HhccceeeeeeecccccchHHHHH
Q 035717 3 PEGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPK-GIHN--LTRL-ILKQVRMEGFLVSDYNHLYPKFLE 78 (125)
Q Consensus 3 ~~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~-~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 78 (125)
++|+|++||++|+..+..++++++++|+++.+|..+..+...+. .... ...+ ..++++..++....+.....+.++
T Consensus 222 ~~gvd~vid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (345)
T cd08293 222 PEGVDVYFDNVGGEISDTVISQMNENSHIILCGQISQYNKDVPYPPPLPEATEAILKERNITRERFLVLNYKDKFEEAIA 301 (345)
T ss_pred CCCceEEEECCCcHHHHHHHHHhccCCEEEEEeeeecccCccCccccccchhHHHhhhcceEEEEEEeeccHhHHHHHHH
Confidence 46899999999998889999999999999999864321110010 0111 1111 123444444433233333456788
Q ss_pred HHHHHHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEEe
Q 035717 79 MIIPHIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 79 ~~~~l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 122 (125)
++++++++|++++....+++++++++|++.+.+++..||+|+++
T Consensus 302 ~~~~l~~~g~i~~~~~~~~~l~~~~~A~~~~~~~~~~gkvvl~~ 345 (345)
T cd08293 302 QLSQWVKEGKLKVKETVYEGLENAGEAFQSMMNGGNIGKQIVKV 345 (345)
T ss_pred HHHHHHHCCCccceeEEeecHHHHHHHHHHHhcCCCCCeEEEEC
Confidence 89999999999987666679999999999999998899999874
No 19
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=99.60 E-value=1.4e-14 Score=99.67 Aligned_cols=112 Identities=13% Similarity=0.112 Sum_probs=87.0
Q ss_pred CceeeEEEeCCch-HHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHH
Q 035717 3 PEGIDIYFENVGG-KMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMII 81 (125)
Q Consensus 3 ~~g~Dvv~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (125)
+.|+|++||++|. ..+..++++++++|+++.+|..... ....++...++.+++++.|++.+.+. ....+++++
T Consensus 257 ~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~----~~~~~~~~~~~~~~~~i~g~~~~~~~--~~~~~~~~~ 330 (371)
T cd08281 257 GGGVDYAFEMAGSVPALETAYEITRRGGTTVTAGLPDPE----ARLSVPALSLVAEERTLKGSYMGSCV--PRRDIPRYL 330 (371)
T ss_pred CCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEccCCCC----ceeeecHHHHhhcCCEEEEEecCCCC--hHHHHHHHH
Confidence 3479999999986 5788999999999999999875321 11233555678899999998765432 234578889
Q ss_pred HHHHcCceeee--eecccchhHHHHHHHHHhcCCCcCeEEE
Q 035717 82 PHIKWAKIVYI--EDTAEGLESALAARVGLFSGRNLGKQVA 120 (125)
Q Consensus 82 ~l~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~gkvvi 120 (125)
+++.+|++++. +..+|+++|+++||+.+++++..+|+|+
T Consensus 331 ~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~vi~ 371 (371)
T cd08281 331 ALYLSGRLPVDKLLTHRLPLDEINEGFDRLAAGEAVRQVIL 371 (371)
T ss_pred HHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCceeeeeC
Confidence 99999999864 4445999999999999999988877663
No 20
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=99.59 E-value=9.6e-15 Score=97.31 Aligned_cols=112 Identities=16% Similarity=0.122 Sum_probs=85.8
Q ss_pred CCceeeEEEeCCch-HHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHH
Q 035717 2 FPEGIDIYFENVGG-KMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMI 80 (125)
Q Consensus 2 ~~~g~Dvv~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
++.|+|++|||+|. ..++++++++.++|+.+.+|..... .....+..++... .+++|++++.... +..+-++
T Consensus 251 T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv~~~~----~~i~~~~~~lv~g-r~~~Gs~~G~~~p--~~diP~l 323 (366)
T COG1062 251 TDGGADYAFECVGNVEVMRQALEATHRGGTSVIIGVAGAG----QEISTRPFQLVTG-RVWKGSAFGGARP--RSDIPRL 323 (366)
T ss_pred cCCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEEecCCCC----ceeecChHHeecc-ceEEEEeecCCcc--ccchhHH
Confidence 56799999999996 5799999999999999999985421 1122344444444 8899998865421 2247888
Q ss_pred HHHHHcCceeeeeecc--cchhHHHHHHHHHhcCCCcCeEEEE
Q 035717 81 IPHIKWAKIVYIEDTA--EGLESALAARVGLFSGRNLGKQVAA 121 (125)
Q Consensus 81 ~~l~~~g~i~~~~~~~--~~l~~~~~a~~~~~~~~~~gkvvi~ 121 (125)
++++.+|++......+ ++|+|+++||+.|++++.. |.||.
T Consensus 324 v~~y~~Gkl~~d~lvt~~~~Le~INeaf~~m~~G~~I-R~Vi~ 365 (366)
T COG1062 324 VDLYMAGKLPLDRLVTHTIPLEDINEAFDLMHEGKSI-RSVIR 365 (366)
T ss_pred HHHHHcCCCchhHHhhccccHHHHHHHHHHHhCCcee-eEEec
Confidence 9999999999876554 9999999999999998765 55554
No 21
>PLN02827 Alcohol dehydrogenase-like
Probab=99.56 E-value=6.8e-14 Score=96.55 Aligned_cols=113 Identities=18% Similarity=0.175 Sum_probs=86.9
Q ss_pred CceeeEEEeCCchH-HHHHHHHhhccC-CEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHH
Q 035717 3 PEGIDIYFENVGGK-MLDAVLINMKIG-GQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMI 80 (125)
Q Consensus 3 ~~g~Dvv~d~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
+.|+|++||++|.. .+..++++++++ |+++.+|.... .+... ....++.+++++.|++.+.+. ....++++
T Consensus 261 ~~g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~~G~~~~----~~~~~-~~~~~~~~~~~i~g~~~~~~~--~~~~~~~~ 333 (378)
T PLN02827 261 GGGADYSFECVGDTGIATTALQSCSDGWGLTVTLGVPKA----KPEVS-AHYGLFLSGRTLKGSLFGGWK--PKSDLPSL 333 (378)
T ss_pred CCCCCEEEECCCChHHHHHHHHhhccCCCEEEEECCcCC----Ccccc-ccHHHHhcCceEEeeecCCCc--hhhhHHHH
Confidence 34799999999975 689999999998 99999997532 11111 113466789999998765442 12347889
Q ss_pred HHHHHcCceee--eeecccchhHHHHHHHHHhcCCCcCeEEEEec
Q 035717 81 IPHIKWAKIVY--IEDTAEGLESALAARVGLFSGRNLGKQVAAVA 123 (125)
Q Consensus 81 ~~l~~~g~i~~--~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~~ 123 (125)
++++++|++++ .+..+|+++|+.+|++.+++++. +|+||.+.
T Consensus 334 ~~~~~~g~i~~~~~i~~~~~le~~~~A~~~~~~~~~-~k~vi~~~ 377 (378)
T PLN02827 334 VDKYMNKEIMIDEFITHNLSFDEINKAFELMREGKC-LRCVIHMP 377 (378)
T ss_pred HHHHHcCCCChHHheEEEecHHHHHHHHHHHHCCCc-eEEEEEec
Confidence 99999999998 45666999999999999998876 69999764
No 22
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=99.56 E-value=8.3e-14 Score=94.63 Aligned_cols=107 Identities=21% Similarity=0.151 Sum_probs=82.9
Q ss_pred ceeeEEEeCCchHH-HHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHH
Q 035717 4 EGIDIYFENVGGKM-LDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIP 82 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (125)
+++|++||++|+.. +..++++++++|+++.+|.... ... .....++.+++++.|++.... +.++++++
T Consensus 230 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-----~~~-~~~~~~~~~~~~i~g~~~~~~-----~~~~~~~~ 298 (339)
T cd08239 230 AGADVAIECSGNTAARRLALEAVRPWGRLVLVGEGGE-----LTI-EVSNDLIRKQRTLIGSWYFSV-----PDMEECAE 298 (339)
T ss_pred CCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcCCCC-----ccc-CcHHHHHhCCCEEEEEecCCH-----HHHHHHHH
Confidence 47999999999764 5789999999999999987432 111 122346678999999875432 24888999
Q ss_pred HHHcCceee--eeecccchhHHHHHHHHHhcCCCcCeEEEEe
Q 035717 83 HIKWAKIVY--IEDTAEGLESALAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 83 l~~~g~i~~--~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 122 (125)
++++|++++ .+..+|+++|+++|++++++++ .||++|.+
T Consensus 299 ~~~~g~i~~~~~i~~~~~l~~~~~a~~~~~~~~-~gKvvi~~ 339 (339)
T cd08239 299 FLARHKLEVDRLVTHRFGLDQAPEAYALFAQGE-SGKVVFVF 339 (339)
T ss_pred HHHcCCCChhHeEEEEecHHHHHHHHHHHHcCC-ceEEEEeC
Confidence 999999875 3455599999999999998875 69999863
No 23
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=99.55 E-value=1.2e-13 Score=93.77 Aligned_cols=106 Identities=18% Similarity=0.137 Sum_probs=82.2
Q ss_pred ceeeEEEeCCc-hHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHH
Q 035717 4 EGIDIYFENVG-GKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIP 82 (125)
Q Consensus 4 ~g~Dvv~d~~g-~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (125)
+++|+++++.| +..+..++++++++|+++.+|.... . ...++...++.+++++.+++.... ..+.++++
T Consensus 222 ~~~d~~i~~~~~~~~~~~~~~~l~~~G~~v~~G~~~~----~-~~~~~~~~~~~~~~~i~g~~~~~~-----~~~~~~~~ 291 (329)
T TIGR02822 222 EPLDAAILFAPAGGLVPPALEALDRGGVLAVAGIHLT----D-TPPLNYQRHLFYERQIRSVTSNTR-----ADAREFLE 291 (329)
T ss_pred ccceEEEECCCcHHHHHHHHHhhCCCcEEEEEeccCc----c-CCCCCHHHHhhCCcEEEEeecCCH-----HHHHHHHH
Confidence 46888888776 4578999999999999999997421 1 112344556678888888764322 34788899
Q ss_pred HHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEE
Q 035717 83 HIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVA 120 (125)
Q Consensus 83 l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi 120 (125)
++++|++++. ..+|+|+|+++||+.+.+++..||+||
T Consensus 292 l~~~g~i~~i-~~~~~l~~~~~A~~~~~~~~~~Gkvvl 328 (329)
T TIGR02822 292 LAAQHGVRVT-THTYPLSEADRALRDLKAGRFDGAAVL 328 (329)
T ss_pred HHHhCCCeeE-EEEEeHHHHHHHHHHHHcCCCceEEEe
Confidence 9999999864 456999999999999999999999987
No 24
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=99.55 E-value=1.5e-13 Score=94.14 Aligned_cols=111 Identities=14% Similarity=0.158 Sum_probs=84.5
Q ss_pred ceeeEEEeCCch-HHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHH
Q 035717 4 EGIDIYFENVGG-KMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIP 82 (125)
Q Consensus 4 ~g~Dvv~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (125)
.|+|++||++|+ ..+..++++++++|+++.+|.... ......+...++.+++++.+.+..... ....++++++
T Consensus 244 ~g~d~vid~~g~~~~~~~~~~~~~~~G~iv~~G~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~ 317 (358)
T TIGR03451 244 FGADVVIDAVGRPETYKQAFYARDLAGTVVLVGVPTP----DMTLELPLLDVFGRGGALKSSWYGDCL--PERDFPMLVD 317 (358)
T ss_pred CCCCEEEECCCCHHHHHHHHHHhccCCEEEEECCCCC----CceeeccHHHHhhcCCEEEEeecCCCC--cHHHHHHHHH
Confidence 479999999996 578899999999999999997432 111223445667788999988653221 2345888999
Q ss_pred HHHcCceeee--eecccchhHHHHHHHHHhcCCCcCeEEEE
Q 035717 83 HIKWAKIVYI--EDTAEGLESALAARVGLFSGRNLGKQVAA 121 (125)
Q Consensus 83 l~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~gkvvi~ 121 (125)
++++|++++. +..+|+++|+.+||+.+++++.. |++|.
T Consensus 318 l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~~-k~~~~ 357 (358)
T TIGR03451 318 LYLQGRLPLDAFVTERIGLDDVEEAFDKMHAGDVL-RSVVE 357 (358)
T ss_pred HHHcCCCCchheEEEEecHHHHHHHHHHHhCCCcc-eeEEe
Confidence 9999999864 45569999999999999988765 77764
No 25
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=99.54 E-value=1.1e-13 Score=94.48 Aligned_cols=108 Identities=18% Similarity=0.134 Sum_probs=83.0
Q ss_pred ceee----EEEeCCchH-HHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHH
Q 035717 4 EGID----IYFENVGGK-MLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLE 78 (125)
Q Consensus 4 ~g~D----vv~d~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (125)
+|+| ++|||+|+. .++.++++++++|+++.+|.... ...++...++.++.++.|.+.+. ...+.
T Consensus 236 ~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~~G~~~~------~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~ 304 (349)
T TIGR03201 236 RGLRSTGWKIFECSGSKPGQESALSLLSHGGTLVVVGYTMA------KTEYRLSNLMAFHARALGNWGCP-----PDRYP 304 (349)
T ss_pred CCCCCCcCEEEECCCChHHHHHHHHHHhcCCeEEEECcCCC------CcccCHHHHhhcccEEEEEecCC-----HHHHH
Confidence 3665 899999975 57789999999999999997532 11234455666778888876432 23488
Q ss_pred HHHHHHHcCceeee-eecccchhHHHHHHHHHhcCCCcCeEEEEe
Q 035717 79 MIIPHIKWAKIVYI-EDTAEGLESALAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 79 ~~~~l~~~g~i~~~-~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 122 (125)
++++++++|++++. ...+|+|+|+++|++.+.+++..||+++++
T Consensus 305 ~~~~~i~~g~i~~~~~i~~~~l~~~~~A~~~~~~~~~~~k~~~~~ 349 (349)
T TIGR03201 305 AALDLVLDGKIQLGPFVERRPLDQIEHVFAAAHHHKLKRRAILTP 349 (349)
T ss_pred HHHHHHHcCCCCcccceEEecHHHHHHHHHHHHcCCccceEEecC
Confidence 99999999999763 223599999999999999998889998863
No 26
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=99.54 E-value=7.3e-14 Score=104.84 Aligned_cols=118 Identities=17% Similarity=0.179 Sum_probs=96.6
Q ss_pred CceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHH
Q 035717 3 PEGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIP 82 (125)
Q Consensus 3 ~~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (125)
.+|||.|+++...+.++++++||+.+|||..+|-....+ ..+.-+..+.+|.++.|+.+....+-..+.|.++..
T Consensus 1623 GrGVdlVLNSLaeEkLQASiRCLa~~GRFLEIGKfDLSq-----NspLGMavfLkNvsfHGiLLDsvmege~e~~~ev~~ 1697 (2376)
T KOG1202|consen 1623 GRGVDLVLNSLAEEKLQASIRCLALHGRFLEIGKFDLSQ-----NSPLGMAVFLKNVSFHGILLDSVMEGEEEMWREVAA 1697 (2376)
T ss_pred CCCeeeehhhhhHHHHHHHHHHHHhcCeeeeecceeccc-----CCcchhhhhhcccceeeeehhhhhcCcHHHHHHHHH
Confidence 469999999999999999999999999999999754221 122345677899999999887776555667778777
Q ss_pred HHHc----CceeeeeecccchhHHHHHHHHHhcCCCcCeEEEEecCC
Q 035717 83 HIKW----AKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAAVASE 125 (125)
Q Consensus 83 l~~~----g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~~~~ 125 (125)
++++ |.++|....+|+-.++++||+.|.+++..||+|+.+.+|
T Consensus 1698 Lv~eGIksGvV~PL~ttvF~~~qvE~AFRfMasGKHIGKVvikvr~e 1744 (2376)
T KOG1202|consen 1698 LVAEGIKSGVVRPLPTTVFHGQQVEDAFRFMASGKHIGKVVIKVRAE 1744 (2376)
T ss_pred HHHhhhccCceeccccccccHHHHHHHHHHHhccCccceEEEEEccc
Confidence 7665 567777777899999999999999999999999998654
No 27
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=99.53 E-value=1.5e-13 Score=95.74 Aligned_cols=111 Identities=14% Similarity=0.076 Sum_probs=85.1
Q ss_pred ceeeEEEeCCch-HHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHH
Q 035717 4 EGIDIYFENVGG-KMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIP 82 (125)
Q Consensus 4 ~g~Dvv~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (125)
+|+|++||++|. ..+..++++++++|+++.++..... ....+++...+..+++++.|++.... ..++++++
T Consensus 256 ~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~g~~~~---~~~~~~~~~~~~~~~~~i~g~~~~~~-----~~~~~~~~ 327 (410)
T cd08238 256 QGFDDVFVFVPVPELVEEADTLLAPDGCLNFFAGPVDK---NFSAPLNFYNVHYNNTHYVGTSGGNT-----DDMKEAID 327 (410)
T ss_pred CCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEEccCCC---CccccccHHHhhhcCcEEEEeCCCCH-----HHHHHHHH
Confidence 479999999984 6789999999999998877542210 01123455567788999999764322 34888999
Q ss_pred HHHcCceeee--eecccchhHHHHHHHHHhcCCCcCeEEEEec
Q 035717 83 HIKWAKIVYI--EDTAEGLESALAARVGLFSGRNLGKQVAAVA 123 (125)
Q Consensus 83 l~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~~ 123 (125)
++.+|++++. +..+|+|+|+++|++.+. ++..||++|.++
T Consensus 328 li~~g~i~~~~~it~~~~l~~~~~A~~~~~-~~~~gKvvl~~~ 369 (410)
T cd08238 328 LMAAGKLNPARMVTHIGGLNAAAETTLNLP-GIPGGKKLIYTQ 369 (410)
T ss_pred HHHcCCCchhhcEEEEecHHHHHHHHHHhh-ccCCceEEEECC
Confidence 9999999984 455699999999999999 677899999863
No 28
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.53 E-value=3.6e-13 Score=90.06 Aligned_cols=114 Identities=19% Similarity=0.199 Sum_probs=89.0
Q ss_pred CceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHh--ccceeeeeeecccccchHHHHHHH
Q 035717 3 PEGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLIL--KQVRMEGFLVSDYNHLYPKFLEMI 80 (125)
Q Consensus 3 ~~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
++++|+++|++|+.....++++++++|+++.+|.... .....+...+.. ++.++.+++... .....+.++.+
T Consensus 190 ~~~~d~vl~~~g~~~~~~~~~~l~~~G~~v~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 263 (305)
T cd08270 190 GAPVDLVVDSVGGPQLARALELLAPGGTVVSVGSSSG-----EPAVFNPAAFVGGGGGRRLYTFFLYD-GEPLAADLARL 263 (305)
T ss_pred CCCceEEEECCCcHHHHHHHHHhcCCCEEEEEeccCC-----CcccccHHHHhcccccceEEEEEccC-HHHHHHHHHHH
Confidence 3479999999999888999999999999999986431 111223333333 588888887654 22345678899
Q ss_pred HHHHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEEe
Q 035717 81 IPHIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 81 ~~l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 122 (125)
++++++|++.+.+..+++++++++|++.+.+++..||+++++
T Consensus 264 ~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~ 305 (305)
T cd08270 264 LGLVAAGRLDPRIGWRGSWTEIDEAAEALLARRFRGKAVLDV 305 (305)
T ss_pred HHHHHCCCccceeccEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence 999999999977556699999999999999998889999874
No 29
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=99.53 E-value=9.9e-14 Score=94.55 Aligned_cols=107 Identities=18% Similarity=0.188 Sum_probs=78.7
Q ss_pred eeeEEEeCCch----HHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHH
Q 035717 5 GIDIYFENVGG----KMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMI 80 (125)
Q Consensus 5 g~Dvv~d~~g~----~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
|+|+|||++|+ ..+..++++++++|+++.+|.... + ..++...++.+++++.|++.+.. ..++++
T Consensus 222 g~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G~~~~-----~-~~~~~~~~~~k~~~i~g~~~~~~-----~~~~~~ 290 (341)
T cd08237 222 AVDHAFECVGGRGSQSAINQIIDYIRPQGTIGLMGVSEY-----P-VPINTRMVLEKGLTLVGSSRSTR-----EDFERA 290 (341)
T ss_pred CCcEEEECCCCCccHHHHHHHHHhCcCCcEEEEEeecCC-----C-cccCHHHHhhCceEEEEecccCH-----HHHHHH
Confidence 68999999995 368899999999999999996431 1 23345567789999999764322 347889
Q ss_pred HHHHHcC-----ceeeeeecccch---hHHHHHHHHHhcCCCcCeEEEEec
Q 035717 81 IPHIKWA-----KIVYIEDTAEGL---ESALAARVGLFSGRNLGKQVAAVA 123 (125)
Q Consensus 81 ~~l~~~g-----~i~~~~~~~~~l---~~~~~a~~~~~~~~~~gkvvi~~~ 123 (125)
++++.+| .+++.+..+|++ +++.+|++.+.++ ..||+||.++
T Consensus 291 ~~~~~~~~~~~~~l~~~i~~~~~l~~l~~~~~a~~~~~~~-~~gKvvi~~~ 340 (341)
T cd08237 291 VELLSRNPEVAEYLRKLVGGVFPVRSINDIHRAFESDLTN-SWGKTVMEWE 340 (341)
T ss_pred HHHHHhCCcccCChHHHhccccccccHHHHHHHHHHHhhc-CcceEEEEee
Confidence 9999998 455555556887 4666666666554 6799999864
No 30
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=99.52 E-value=2.1e-13 Score=91.84 Aligned_cols=113 Identities=19% Similarity=0.254 Sum_probs=88.3
Q ss_pred ceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeeccc-----ccchHHHHH
Q 035717 4 EGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDY-----NHLYPKFLE 78 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 78 (125)
+|+|++||++|+.....++++++++|+++.+|.... .....+....+.+++++.++..... +....+.++
T Consensus 207 ~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (324)
T cd08292 207 APISVALDSVGGKLAGELLSLLGEGGTLVSFGSMSG-----EPMQISSGDLIFKQATVRGFWGGRWSQEMSVEYRKRMIA 281 (324)
T ss_pred CCCcEEEECCCChhHHHHHHhhcCCcEEEEEecCCC-----CCCcCCHHHHhhCCCEEEEEEcHHhhhhcCHHHHHHHHH
Confidence 589999999999888999999999999999986421 1112344445678999998876432 122356788
Q ss_pred HHHHHHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEE
Q 035717 79 MIIPHIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAA 121 (125)
Q Consensus 79 ~~~~l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~ 121 (125)
++++++.+|.+.+.....|+++++.+|++.+.++...||++++
T Consensus 282 ~~~~l~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~~kvvv~ 324 (324)
T cd08292 282 ELLTLALKGQLLLPVEAVFDLGDAAKAAAASMRPGRAGKVLLR 324 (324)
T ss_pred HHHHHHHCCCccCccccEecHHHHHHHHHHHHcCCCCceEEeC
Confidence 9999999999986655569999999999999988888998873
No 31
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=99.51 E-value=3.5e-13 Score=92.00 Aligned_cols=106 Identities=19% Similarity=0.209 Sum_probs=84.0
Q ss_pred ceeeEEEeCCch-HHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHH
Q 035717 4 EGIDIYFENVGG-KMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIP 82 (125)
Q Consensus 4 ~g~Dvv~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (125)
+++|+++|++|+ ..+..++++++++|+++.+|..+. ....+...+..+++++.+++.+.. +.++++++
T Consensus 240 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~------~~~~~~~~~~~~~~~i~g~~~~~~-----~~~~~~~~ 308 (351)
T cd08233 240 GGVDVSFDCAGVQATLDTAIDALRPRGTAVNVAIWEK------PISFNPNDLVLKEKTLTGSICYTR-----EDFEEVID 308 (351)
T ss_pred CCCCEEEECCCCHHHHHHHHHhccCCCEEEEEccCCC------CCccCHHHHHhhCcEEEEEeccCc-----chHHHHHH
Confidence 369999999985 578999999999999999997541 123455667788999999865432 34899999
Q ss_pred HHHcCceee--eeecccchhHH-HHHHHHHhcCCCc-CeEEE
Q 035717 83 HIKWAKIVY--IEDTAEGLESA-LAARVGLFSGRNL-GKQVA 120 (125)
Q Consensus 83 l~~~g~i~~--~~~~~~~l~~~-~~a~~~~~~~~~~-gkvvi 120 (125)
++++|++++ .+..+|+++|+ ++||+.+.+++.. ||+||
T Consensus 309 ~~~~g~l~~~~~i~~~~~l~e~~~~a~~~~~~~~~~~~k~v~ 350 (351)
T cd08233 309 LLASGKIDAEPLITSRIPLEDIVEKGFEELINDKEQHVKILV 350 (351)
T ss_pred HHHcCCCChHHheEEEecHHHHHHHHHHHHHhCCCCceEEEe
Confidence 999999964 34556999996 7999999988864 99987
No 32
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=99.49 E-value=5.4e-13 Score=90.10 Aligned_cols=118 Identities=50% Similarity=0.872 Sum_probs=88.7
Q ss_pred CceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHH
Q 035717 3 PEGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIP 82 (125)
Q Consensus 3 ~~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (125)
++++|+++|++|+..+..++++++++|+++.+|..............+...++.++.++.++....+.....+.+.++++
T Consensus 212 ~~~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (329)
T cd05288 212 PDGIDVYFDNVGGEILDAALTLLNKGGRIALCGAISQYNATEPPGPKNLGNIITKRLTMQGFIVSDYADRFPEALAELAK 291 (329)
T ss_pred cCCceEEEEcchHHHHHHHHHhcCCCceEEEEeeccCcccccccccccHHHHhhCcceEEeecchhhHHHHHHHHHHHHH
Confidence 46799999999998899999999999999999864421110000012344556788888887654433334567888999
Q ss_pred HHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEE
Q 035717 83 HIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVA 120 (125)
Q Consensus 83 l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi 120 (125)
++++|.+++....+++++++.++++.+.+++..||+++
T Consensus 292 ~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvv 329 (329)
T cd05288 292 WLAEGKLKYREDVVEGLENAPEAFLGLFTGKNTGKLVV 329 (329)
T ss_pred HHHCCCccccccccccHHHHHHHHHHHhcCCCccceeC
Confidence 99999998765556999999999999998888888874
No 33
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=99.48 E-value=4.2e-13 Score=91.85 Aligned_cols=108 Identities=16% Similarity=0.088 Sum_probs=79.8
Q ss_pred ceeeEEEeCCchH-HHHHHHHhhccCCEEEEEccccccCCCCCCCccc----HHHHHhccceeeeeeecccccchHHHHH
Q 035717 4 EGIDIYFENVGGK-MLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHN----LTRLILKQVRMEGFLVSDYNHLYPKFLE 78 (125)
Q Consensus 4 ~g~Dvv~d~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (125)
.++|+|||++|.. .+..++++++++|+++.+|..... ....++ ...++.+++++.|++..... .++
T Consensus 237 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~----~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~-----~~~ 307 (355)
T cd08230 237 GEFDLIIEATGVPPLAFEALPALAPNGVVILFGVPGGG----REFEVDGGELNRDLVLGNKALVGSVNANKR-----HFE 307 (355)
T ss_pred CCCCEEEECcCCHHHHHHHHHHccCCcEEEEEecCCCC----CccccChhhhhhhHhhcCcEEEEecCCchh-----hHH
Confidence 4799999999974 689999999999999999975431 011112 24567789999998654332 367
Q ss_pred HHHHHHHcCc------eeeeeecccchhHHHHHHHHHhcCCCcCeEEEEe
Q 035717 79 MIIPHIKWAK------IVYIEDTAEGLESALAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 79 ~~~~l~~~g~------i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 122 (125)
++++++.++. +++.+..+|+++|+++||+.+.++. +|++|++
T Consensus 308 ~~~~~l~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~--~K~v~~~ 355 (355)
T cd08230 308 QAVEDLAQWKYRWPGVLERLITRRVPLEEFAEALTEKPDGE--IKVVIEW 355 (355)
T ss_pred HHHHHHHhcccccccchHHheeeeecHHHHHHHHHhcccCC--eEEEeeC
Confidence 7778887766 4555566799999999999987654 5999864
No 34
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.47 E-value=9.9e-13 Score=89.54 Aligned_cols=109 Identities=22% Similarity=0.313 Sum_probs=87.1
Q ss_pred ceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHHH
Q 035717 4 EGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIPH 83 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (125)
+++|++||++|+..+..++++++++|+++.+|.... .....+...++.++.++.++... ..+.+++++++
T Consensus 242 ~~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l 311 (350)
T cd08274 242 EPVDVVADVVGGPLFPDLLRLLRPGGRYVTAGAIAG-----PVVELDLRTLYLKDLTLFGSTLG-----TREVFRRLVRY 311 (350)
T ss_pred CCCcEEEecCCHHHHHHHHHHhccCCEEEEecccCC-----ccccCCHHHhhhcceEEEEeecC-----CHHHHHHHHHH
Confidence 579999999999889999999999999999986421 11233445556788888887642 23458889999
Q ss_pred HHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEEe
Q 035717 84 IKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 84 ~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 122 (125)
+.++++++.....|+++++.+|++.+.++...||+++++
T Consensus 312 ~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvvi~~ 350 (350)
T cd08274 312 IEEGEIRPVVAKTFPLSEIREAQAEFLEKRHVGKLVLVP 350 (350)
T ss_pred HHCCCcccccccccCHHHHHHHHHHHhcCCCceEEEEeC
Confidence 999999876555699999999999999888889999864
No 35
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=99.45 E-value=1.9e-12 Score=89.70 Aligned_cols=107 Identities=16% Similarity=0.192 Sum_probs=84.3
Q ss_pred eeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHHHH
Q 035717 5 GIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIPHI 84 (125)
Q Consensus 5 g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 84 (125)
|+|+++|++|+..+..++++++++|+++.+|..... . ...+...+..++.++.+.+.+.+ +.+.++++++
T Consensus 285 g~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~----~-~~~~~~~l~~~~~~i~g~~~~~~-----~~~~~~~~~~ 354 (393)
T cd08246 285 DPDIVFEHPGRATFPTSVFVCDRGGMVVICAGTTGY----N-HTYDNRYLWMRQKRIQGSHFAND-----REAAEANRLV 354 (393)
T ss_pred CCeEEEECCchHhHHHHHHHhccCCEEEEEcccCCC----C-CCCcHHHHhhheeEEEecccCcH-----HHHHHHHHHH
Confidence 799999999988889999999999999999864321 1 12234455667778877755432 3478889999
Q ss_pred HcCceeeeeecccchhHHHHHHHHHhcC-CCcCeEEEE
Q 035717 85 KWAKIVYIEDTAEGLESALAARVGLFSG-RNLGKQVAA 121 (125)
Q Consensus 85 ~~g~i~~~~~~~~~l~~~~~a~~~~~~~-~~~gkvvi~ 121 (125)
+++.+.+....+|+++++++|++.+.++ +..||+++.
T Consensus 355 ~~~~l~~~~~~~~~l~~~~~a~~~~~~~~~~~gkvvv~ 392 (393)
T cd08246 355 MKGRIDPCLSKVFSLDETPDAHQLMHRNQHHVGNMAVL 392 (393)
T ss_pred HcCCceeeeeEEEeHHHHHHHHHHHHhCccccceEEEe
Confidence 9999987655669999999999999988 788999875
No 36
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=99.44 E-value=4.4e-12 Score=85.38 Aligned_cols=114 Identities=18% Similarity=0.176 Sum_probs=89.0
Q ss_pred ceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccc-cchHHHHHHHHH
Q 035717 4 EGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYN-HLYPKFLEMIIP 82 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 82 (125)
+++|+++|++|+.....++++++++|+++.+|..... .. ..+...++.+++++.++...... ....+.++++++
T Consensus 210 ~~~d~vl~~~g~~~~~~~~~~l~~~g~~v~~g~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (324)
T cd08244 210 GGVTVVLDGVGGAIGRAALALLAPGGRFLTYGWASGE----WT-ALDEDDARRRGVTVVGLLGVQAERGGLRALEARALA 284 (324)
T ss_pred CCceEEEECCChHhHHHHHHHhccCcEEEEEecCCCC----CC-ccCHHHHhhCCcEEEEeecccCCHHHHHHHHHHHHH
Confidence 4799999999988889999999999999999874321 11 22334456788888887654322 234567888999
Q ss_pred HHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEEe
Q 035717 83 HIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 83 l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 122 (125)
+++++.+.+.....|+++++.+|++.+.+++..||+++++
T Consensus 285 ~l~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~ 324 (324)
T cd08244 285 EAAAGRLVPVVGQTFPLERAAEAHAALEARSTVGKVLLLP 324 (324)
T ss_pred HHHCCCccCccceEEeHHHHHHHHHHHHcCCCCceEEEeC
Confidence 9999999876555699999999999999998899999864
No 37
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.44 E-value=6.2e-13 Score=88.10 Aligned_cols=106 Identities=17% Similarity=0.152 Sum_probs=87.7
Q ss_pred eEEEeCCc---hHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHHH
Q 035717 7 DIYFENVG---GKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIPH 83 (125)
Q Consensus 7 Dvv~d~~g---~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (125)
|.++|++. ...++.++++++++|++|.+|.... ....+...+..+++++.|+.++...+ .++++++
T Consensus 248 dg~~~~v~~~a~~~~~~~~~~lk~~Gt~V~vg~p~~------~~~~~~~~lil~~~~I~GS~vG~~ke-----t~E~Ldf 316 (360)
T KOG0023|consen 248 DGGIDTVSNLAEHALEPLLGLLKVNGTLVLVGLPEK------PLKLDTFPLILGRKSIKGSIVGSRKE-----TQEALDF 316 (360)
T ss_pred cCcceeeeeccccchHHHHHHhhcCCEEEEEeCcCC------cccccchhhhcccEEEEeeccccHHH-----HHHHHHH
Confidence 44444443 2368899999999999999998652 22345566788899999999887766 8999999
Q ss_pred HHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEEecC
Q 035717 84 IKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAAVAS 124 (125)
Q Consensus 84 ~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~~~ 124 (125)
+.+|.+++++.. .+++++++||++|++++..+|.||++..
T Consensus 317 ~a~~~ik~~IE~-v~~~~v~~a~erm~kgdV~yRfVvD~s~ 356 (360)
T KOG0023|consen 317 VARGLIKSPIEL-VKLSEVNEAYERMEKGDVRYRFVVDVSK 356 (360)
T ss_pred HHcCCCcCceEE-EehhHHHHHHHHHHhcCeeEEEEEEccc
Confidence 999999998887 6999999999999999999999998753
No 38
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=99.44 E-value=1.4e-12 Score=88.68 Aligned_cols=106 Identities=19% Similarity=0.146 Sum_probs=85.1
Q ss_pred ceeeEEEeCCchH-HHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHH
Q 035717 4 EGIDIYFENVGGK-MLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIP 82 (125)
Q Consensus 4 ~g~Dvv~d~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (125)
+++|++||++|+. ....++++++++|+++.+|.... . ...+...++.+++++.+++.... +.++++++
T Consensus 231 ~~~d~v~~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-----~-~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~ 299 (337)
T cd05283 231 GSLDLIIDTVSASHDLDPYLSLLKPGGTLVLVGAPEE-----P-LPVPPFPLIFGRKSVAGSLIGGR-----KETQEMLD 299 (337)
T ss_pred CCceEEEECCCCcchHHHHHHHhcCCCEEEEEeccCC-----C-CccCHHHHhcCceEEEEecccCH-----HHHHHHHH
Confidence 5799999999987 48899999999999999987532 1 12344555678899998775432 35888899
Q ss_pred HHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEE
Q 035717 83 HIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAA 121 (125)
Q Consensus 83 l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~ 121 (125)
++++|++.+.. ..|+++++++|++.+++++..||+|++
T Consensus 300 ~~~~~~l~~~~-~~~~~~~~~~a~~~~~~~~~~~k~v~~ 337 (337)
T cd05283 300 FAAEHGIKPWV-EVIPMDGINEALERLEKGDVRYRFVLD 337 (337)
T ss_pred HHHhCCCccce-EEEEHHHHHHHHHHHHcCCCcceEeeC
Confidence 99999998754 459999999999999999989999874
No 39
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=99.43 E-value=2.3e-12 Score=88.27 Aligned_cols=109 Identities=18% Similarity=0.146 Sum_probs=79.4
Q ss_pred ceeeEEEeCCch-HHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHH
Q 035717 4 EGIDIYFENVGG-KMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIP 82 (125)
Q Consensus 4 ~g~Dvv~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (125)
+|+|++||++|+ ..+..++++++++|+++.+|..... .........++.+++++.+++.+... .++++++
T Consensus 248 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 318 (361)
T cd08231 248 RGADVVIEASGHPAAVPEGLELLRRGGTYVLVGSVAPA----GTVPLDPERIVRKNLTIIGVHNYDPS-----HLYRAVR 318 (361)
T ss_pred CCCcEEEECCCChHHHHHHHHHhccCCEEEEEcCCCCC----CccccCHHHHhhcccEEEEcccCCch-----hHHHHHH
Confidence 589999999986 5688999999999999999865311 11122333467788999888654322 2666777
Q ss_pred HHHcC--ce--eeeeecccchhHHHHHHHHHhcCCCcCeEEEEe
Q 035717 83 HIKWA--KI--VYIEDTAEGLESALAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 83 l~~~g--~i--~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 122 (125)
++.++ .+ ...+..+|+++|+++|++++++++ .+|++|++
T Consensus 319 ~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~-~~k~vi~~ 361 (361)
T cd08231 319 FLERTQDRFPFAELVTHRYPLEDINEALELAESGT-ALKVVIDP 361 (361)
T ss_pred HHHhccCcCCchhheeeeeeHHHHHHHHHHHHcCC-ceEEEeCC
Confidence 77776 33 334455699999999999998876 48999864
No 40
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=99.43 E-value=3.6e-12 Score=88.55 Aligned_cols=110 Identities=20% Similarity=0.223 Sum_probs=85.9
Q ss_pred ceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHHH
Q 035717 4 EGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIPH 83 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (125)
+|+|++|||+|+..+..++++++++|+++.+|.....+ ...+...+..++.++.+...... ..+++++++
T Consensus 279 ~g~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 348 (398)
T TIGR01751 279 EDPDIVFEHPGRATFPTSVFVCRRGGMVVICGGTTGYN-----HDYDNRYLWMRQKRIQGSHFANL-----REAWEANRL 348 (398)
T ss_pred CCceEEEECCcHHHHHHHHHhhccCCEEEEEccccCCC-----CCcCHHHHhhcccEEEccccCcH-----HHHHHHHHH
Confidence 57999999999888999999999999999998754211 12234445556667766654332 236788999
Q ss_pred HHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEEec
Q 035717 84 IKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAAVA 123 (125)
Q Consensus 84 ~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~~ 123 (125)
++++.+.+.+..++++++++++++.+.+++..||+|+++.
T Consensus 349 l~~~~l~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvv~~~ 388 (398)
T TIGR01751 349 VAKGRIDPTLSKVYPLEEIGQAHQDVHRNHHQGNVAVLVL 388 (398)
T ss_pred HHCCCcccceeeEEcHHHHHHHHHHHHcCCCCceEEEEeC
Confidence 9999998776666999999999999999998999999874
No 41
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=99.43 E-value=6.1e-12 Score=84.82 Aligned_cols=113 Identities=24% Similarity=0.303 Sum_probs=85.8
Q ss_pred ceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeeccc-ccchHHHHHHHHH
Q 035717 4 EGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDY-NHLYPKFLEMIIP 82 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (125)
.++|+++|++|++.+..++++++++|+++.+|.... . ....+...++.+++++.++..... .....+.++.+.+
T Consensus 210 ~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (323)
T TIGR02823 210 ERWAGAVDTVGGHTLANVLAQLKYGGAVAACGLAGG----P-DLPTTVLPFILRGVSLLGIDSVYCPMALREAAWQRLAT 284 (323)
T ss_pred CCceEEEECccHHHHHHHHHHhCCCCEEEEEcccCC----C-CccccHHHHhhcceEEEEEeccccCchhHHHHHHHHHH
Confidence 468999999999889999999999999999987532 1 112233445578889888764322 2233456778888
Q ss_pred HHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEEe
Q 035717 83 HIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 83 l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 122 (125)
++..+.+.+.. ..|+++++++|++.+.+++..||+++++
T Consensus 285 ~~~~~~~~~~~-~~~~l~~~~~a~~~~~~~~~~~k~vv~~ 323 (323)
T TIGR02823 285 DLKPRNLESIT-REITLEELPEALEQILAGQHRGRTVVDV 323 (323)
T ss_pred HhhcCCCcCce-eeecHHHHHHHHHHHhCCCccceEEEeC
Confidence 88889887643 3699999999999999999899999863
No 42
>PLN02740 Alcohol dehydrogenase-like
Probab=99.43 E-value=3.8e-12 Score=88.00 Aligned_cols=111 Identities=14% Similarity=0.137 Sum_probs=82.0
Q ss_pred ceeeEEEeCCch-HHHHHHHHhhccC-CEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHH
Q 035717 4 EGIDIYFENVGG-KMLDAVLINMKIG-GQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMII 81 (125)
Q Consensus 4 ~g~Dvv~d~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (125)
.|+|++||++|+ ..+..++++++++ |+++.+|..... ....+.... +.+++++.|++.+.+.. ...+.+++
T Consensus 267 ~g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~G~~~~~----~~~~~~~~~-~~~~~~i~g~~~~~~~~--~~~~~~~~ 339 (381)
T PLN02740 267 GGVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIHPTP----KMLPLHPME-LFDGRSITGSVFGDFKG--KSQLPNLA 339 (381)
T ss_pred CCCCEEEECCCChHHHHHHHHhhhcCCCEEEEEccCCCC----ceecccHHH-HhcCCeEEEEecCCCCc--HHHHHHHH
Confidence 379999999996 5789999999996 999999975321 111222222 34688999887654431 23478899
Q ss_pred HHHHcCceeee--eecccchhHHHHHHHHHhcCCCcCeEEEEe
Q 035717 82 PHIKWAKIVYI--EDTAEGLESALAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 82 ~l~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 122 (125)
+++.+|++++. +..+|+|+|+++|++.+.+++. .|++|.+
T Consensus 340 ~~~~~g~i~~~~~it~~~~l~e~~~A~~~~~~~~~-~k~~~~~ 381 (381)
T PLN02740 340 KQCMQGVVNLDGFITHELPFEKINEAFQLLEDGKA-LRCLLHL 381 (381)
T ss_pred HHHHcCCCChHHheeEEecHHHHHHHHHHHHCCCc-eeEEEeC
Confidence 99999998763 4456999999999999988765 5998863
No 43
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=99.43 E-value=4e-12 Score=86.34 Aligned_cols=113 Identities=22% Similarity=0.242 Sum_probs=88.1
Q ss_pred eeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeeccc-----ccchHHHHHH
Q 035717 5 GIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDY-----NHLYPKFLEM 79 (125)
Q Consensus 5 g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 79 (125)
++|++||++|+......+++++++|+++.+|..... ....+...++.+++++.+...... +......+++
T Consensus 221 ~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (341)
T cd08290 221 RPKLALNCVGGKSATELARLLSPGGTMVTYGGMSGQ-----PVTVPTSLLIFKDITLRGFWLTRWLKRANPEEKEDMLEE 295 (341)
T ss_pred CceEEEECcCcHhHHHHHHHhCCCCEEEEEeccCCC-----CcccCHHHHhhCCceEEEEecHHHHhhcCHHHHHHHHHH
Confidence 799999999988888899999999999999864321 112233345778899998875432 2233457889
Q ss_pred HHHHHHcCceeeeeeccc---chhHHHHHHHHHhcCCCcCeEEEEe
Q 035717 80 IIPHIKWAKIVYIEDTAE---GLESALAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 80 ~~~l~~~g~i~~~~~~~~---~l~~~~~a~~~~~~~~~~gkvvi~~ 122 (125)
+++++.+|.+.+....++ +++++.+|++.+.++...||+|+.+
T Consensus 296 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~k~v~~~ 341 (341)
T cd08290 296 LAELIREGKLKAPPVEKVTDDPLEEFKDALANALKGGGGGKQVLVM 341 (341)
T ss_pred HHHHHHcCCccCCcccccccCCHHHHHHHHHHHhhcCCCCeEEEeC
Confidence 999999999987655456 9999999999999988889999864
No 44
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.42 E-value=3.1e-12 Score=84.96 Aligned_cols=108 Identities=19% Similarity=0.182 Sum_probs=87.1
Q ss_pred eeeEEEeCCchH-HHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHHH
Q 035717 5 GIDIYFENVGGK-MLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIPH 83 (125)
Q Consensus 5 g~Dvv~d~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (125)
.+|++|||+|.+ +++.++.+++.+|++++.|... ....++......|++.+.|...+.... +..++++
T Consensus 242 ~~d~~~dCsG~~~~~~aai~a~r~gGt~vlvg~g~------~~~~fpi~~v~~kE~~~~g~fry~~~~-----y~~ai~l 310 (354)
T KOG0024|consen 242 QPDVTFDCSGAEVTIRAAIKATRSGGTVVLVGMGA------EEIQFPIIDVALKEVDLRGSFRYCNGD-----YPTAIEL 310 (354)
T ss_pred CCCeEEEccCchHHHHHHHHHhccCCEEEEeccCC------CccccChhhhhhheeeeeeeeeecccc-----HHHHHHH
Confidence 489999999965 7999999999999988887633 234566777888999999987654433 8889999
Q ss_pred HHcCceeeeeecc--cchhHHHHHHHHHhcCCC-cCeEEEEec
Q 035717 84 IKWAKIVYIEDTA--EGLESALAARVGLFSGRN-LGKQVAAVA 123 (125)
Q Consensus 84 ~~~g~i~~~~~~~--~~l~~~~~a~~~~~~~~~-~gkvvi~~~ 123 (125)
+++|++.+...++ |+++++.+||+.+..+.. .-|++|..+
T Consensus 311 i~sGki~~k~lIT~r~~~~~~~eAf~~~~~~~~~~iKv~i~~~ 353 (354)
T KOG0024|consen 311 VSSGKIDVKPLITHRYKFDDADEAFETLQHGEEGVIKVIITGP 353 (354)
T ss_pred HHcCCcCchhheecccccchHHHHHHHHHhCcCCceEEEEeCC
Confidence 9999999775554 999999999999998763 348888754
No 45
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=99.42 E-value=4.7e-12 Score=85.24 Aligned_cols=113 Identities=16% Similarity=0.212 Sum_probs=88.0
Q ss_pred ceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeeccc-----ccchHHHHH
Q 035717 4 EGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDY-----NHLYPKFLE 78 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 78 (125)
+++|+++|++|+......+++++++|+++.+|..... ....+...+..+++++.++....+ +....+.++
T Consensus 206 ~~~d~vl~~~g~~~~~~~~~~l~~~g~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (323)
T cd05282 206 AGARLALDAVGGESATRLARSLRPGGTLVNYGLLSGE-----PVPFPRSVFIFKDITVRGFWLRQWLHSATKEAKQETFA 280 (323)
T ss_pred CCceEEEECCCCHHHHHHHHhhCCCCEEEEEccCCCC-----CCCCCHHHHhhcCceEEEEEehHhhccCCHHHHHHHHH
Confidence 5899999999988888899999999999999864321 112233444448899888876543 223456788
Q ss_pred HHHHHHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEE
Q 035717 79 MIIPHIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAA 121 (125)
Q Consensus 79 ~~~~l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~ 121 (125)
++++++++|.+.+.....|+++++++|++.+.+++..||++++
T Consensus 281 ~~~~~l~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~ 323 (323)
T cd05282 281 EVIKLVEAGVLTTPVGAKFPLEDFEEAVAAAEQPGRGGKVLLT 323 (323)
T ss_pred HHHHHHhCCCcccCccceecHHHHHHHHHHHhcCCCCceEeeC
Confidence 9999999999987655569999999999999988888999874
No 46
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=99.42 E-value=2.6e-12 Score=87.17 Aligned_cols=106 Identities=15% Similarity=0.141 Sum_probs=83.7
Q ss_pred ceeeEEEeCCc-hHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHH
Q 035717 4 EGIDIYFENVG-GKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIP 82 (125)
Q Consensus 4 ~g~Dvv~d~~g-~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (125)
.++|+++|++| ...+..++++++++|+++.+|.... ...++...++.+++++.++..+. ...++++++
T Consensus 227 ~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~------~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~ 295 (333)
T cd08296 227 GGAKLILATAPNAKAISALVGGLAPRGKLLILGAAGE------PVAVSPLQLIMGRKSIHGWPSGT-----ALDSEDTLK 295 (333)
T ss_pred CCCCEEEECCCchHHHHHHHHHcccCCEEEEEecCCC------CCCcCHHHHhhcccEEEEeCcCC-----HHHHHHHHH
Confidence 36899999986 5678899999999999999987541 11234445668899999976332 234778888
Q ss_pred HHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEE
Q 035717 83 HIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAA 121 (125)
Q Consensus 83 l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~ 121 (125)
+++++++++.+ .+|+++|+.+|++.+.+++..||+|++
T Consensus 296 ~~~~~~l~~~v-~~~~~~~~~~a~~~~~~~~~~gk~v~~ 333 (333)
T cd08296 296 FSALHGVRPMV-ETFPLEKANEAYDRMMSGKARFRVVLT 333 (333)
T ss_pred HHHhCCCCceE-EEEEHHHHHHHHHHHHCCCCceeEEeC
Confidence 88999988764 359999999999999999989999874
No 47
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=99.41 E-value=3.6e-12 Score=87.26 Aligned_cols=109 Identities=22% Similarity=0.201 Sum_probs=84.7
Q ss_pred ceeeEEEeCCchH-HHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeee-cccccchHHHHHHHH
Q 035717 4 EGIDIYFENVGGK-MLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLV-SDYNHLYPKFLEMII 81 (125)
Q Consensus 4 ~g~Dvv~d~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (125)
.|+|++|||+|.. .+.+++++++++|+++.+|..... .. ..+...++.+++++.|.+. ..... +++++
T Consensus 237 ~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~~~----~~-~~~~~~~~~kel~l~gs~~~~~~~~-----~~~~~ 306 (350)
T COG1063 237 RGADVVIEAVGSPPALDQALEALRPGGTVVVVGVYGGE----DI-PLPAGLVVSKELTLRGSLRPSGRED-----FERAL 306 (350)
T ss_pred CCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEeccCCc----cC-ccCHHHHHhcccEEEeccCCCCccc-----HHHHH
Confidence 4799999999964 589999999999999999986531 10 3455678889999999853 22223 88899
Q ss_pred HHHHcCceeeeee--cccchhHHHHHHHHHhcCCC-cCeEEEEe
Q 035717 82 PHIKWAKIVYIED--TAEGLESALAARVGLFSGRN-LGKQVAAV 122 (125)
Q Consensus 82 ~l~~~g~i~~~~~--~~~~l~~~~~a~~~~~~~~~-~gkvvi~~ 122 (125)
+++.+|++.+... ..++++|+++||+.+.+.+. .-|+++.+
T Consensus 307 ~ll~~g~i~~~~lit~~~~~~~~~~a~~~~~~~~~~~~Kv~i~~ 350 (350)
T COG1063 307 DLLASGKIDPEKLITHRLPLDDAAEAYELFADRKEEAIKVVLKP 350 (350)
T ss_pred HHHHcCCCChhHceEeeccHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 9999999998643 33789999999999998543 45888753
No 48
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=99.40 E-value=7e-12 Score=84.46 Aligned_cols=113 Identities=22% Similarity=0.278 Sum_probs=84.3
Q ss_pred ceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccc-cchHHHHHHHHH
Q 035717 4 EGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYN-HLYPKFLEMIIP 82 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 82 (125)
+++|+++|++|+..+..++++++++|+++.+|..... +. ......++.+++++.++...... ....+.++.+.+
T Consensus 212 ~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (325)
T cd05280 212 ARWAGAIDTVGGDVLANLLKQTKYGGVVASCGNAAGP----EL-TTTVLPFILRGVSLLGIDSVNCPMELRKQVWQKLAT 286 (325)
T ss_pred CCccEEEECCchHHHHHHHHhhcCCCEEEEEecCCCC----cc-ccccchheeeeeEEEEEEeecCchhHHHHHHHHHHH
Confidence 5799999999998899999999999999999874321 11 22333344688888887654432 223456677777
Q ss_pred HHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEEe
Q 035717 83 HIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 83 l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 122 (125)
++..+... .+..+|+++++++|++++.+++..||+++++
T Consensus 287 ~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~gk~vv~~ 325 (325)
T cd05280 287 EWKPDLLE-IVVREISLEELPEAIDRLLAGKHRGRTVVKI 325 (325)
T ss_pred HHhcCCcc-ceeeEecHHHHHHHHHHHhcCCcceEEEEeC
Confidence 77777433 4555699999999999999999999999864
No 49
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=99.40 E-value=2.2e-12 Score=87.96 Aligned_cols=120 Identities=20% Similarity=0.149 Sum_probs=83.2
Q ss_pred CceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeec----ccccchHHHHH
Q 035717 3 PEGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVS----DYNHLYPKFLE 78 (125)
Q Consensus 3 ~~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 78 (125)
..|||+||||+|+.++..+..+++.+|+...++........... .-.+..+........+.+-. .+....++.++
T Consensus 223 ~~~~DvVlD~vg~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 301 (347)
T KOG1198|consen 223 GKGVDVVLDCVGGSTLTKSLSCLLKGGGGAYIGLVGDELANYKL-DDLWQSANGIKLYSLGLKGVNYRWLYFVPSAEYLK 301 (347)
T ss_pred CCCccEEEECCCCCccccchhhhccCCceEEEEecccccccccc-ccchhhhhhhhheeeeeeccceeeeeecCCHHHHH
Confidence 46899999999998888999999999987777654321111000 00000011111111111111 12234567899
Q ss_pred HHHHHHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEEec
Q 035717 79 MIIPHIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAAVA 123 (125)
Q Consensus 79 ~~~~l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~~ 123 (125)
.+.+++++|++++.+...||++++.+|++++.+++..||+++.+.
T Consensus 302 ~l~~~ie~gkikp~i~~~~p~~~~~ea~~~~~~~~~~GK~vl~~~ 346 (347)
T KOG1198|consen 302 ALVELIEKGKIKPVIDSVYPFSQAKEAFEKLEKSHATGKVVLEKD 346 (347)
T ss_pred HHHHHHHcCcccCCcceeeeHHHHHHHHHHHhhcCCcceEEEEec
Confidence 999999999999999999999999999999999999999999875
No 50
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=99.40 E-value=7.8e-12 Score=84.36 Aligned_cols=114 Identities=20% Similarity=0.274 Sum_probs=79.8
Q ss_pred ceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeeccc-ccchHHHHHHHHH
Q 035717 4 EGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDY-NHLYPKFLEMIIP 82 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (125)
+++|+++|++|+..+..++++++++|+++.+|.... .. ...+...++.+++++.+++.... .....+.++.+..
T Consensus 212 ~~~d~vld~~g~~~~~~~~~~l~~~G~~i~~g~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (326)
T cd08289 212 QRWAGAVDPVGGKTLAYLLSTLQYGGSVAVSGLTGG----GE-VETTVFPFILRGVNLLGIDSVECPMELRRRIWRRLAT 286 (326)
T ss_pred CCcCEEEECCcHHHHHHHHHHhhcCCEEEEEeecCC----CC-CCcchhhhhhccceEEEEEeEecCchHHHHHHHHHHh
Confidence 579999999999889999999999999999987532 11 12223445578899988754322 1122344455544
Q ss_pred HHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEEe
Q 035717 83 HIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 83 l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 122 (125)
.+..+.+...+..+|+++++++|++.+.+++..||+++++
T Consensus 287 ~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 326 (326)
T cd08289 287 DLKPTQLLNEIKQEITLDELPEALKQILQGRVTGRTVVKL 326 (326)
T ss_pred hcCccccccccceEeeHHHHHHHHHHHhcCcccceEEEeC
Confidence 4432333333455599999999999999998899999864
No 51
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=99.38 E-value=9.3e-12 Score=85.57 Aligned_cols=109 Identities=18% Similarity=0.188 Sum_probs=79.9
Q ss_pred ceeeEEEeCCch-HHHHHHHHhhccC-CEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHH
Q 035717 4 EGIDIYFENVGG-KMLDAVLINMKIG-GQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMII 81 (125)
Q Consensus 4 ~g~Dvv~d~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (125)
+|+|++||++|+ ..+..++++++++ |+++.+|..... ....+...+.. ++++.|++.+.+. ....+.+++
T Consensus 253 ~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~-----~~~~~~~~~~~-~~~i~g~~~~~~~--~~~~~~~~~ 324 (365)
T cd08277 253 GGVDYSFECTGNADLMNEALESTKLGWGVSVVVGVPPGA-----ELSIRPFQLIL-GRTWKGSFFGGFK--SRSDVPKLV 324 (365)
T ss_pred CCCCEEEECCCChHHHHHHHHhcccCCCEEEEEcCCCcc-----ccccCHhHHhh-CCEEEeeecCCCC--hHHHHHHHH
Confidence 579999999995 5678999999885 999999875321 11223334443 7888888765542 123478889
Q ss_pred HHHHcCceee--eeecccchhHHHHHHHHHhcCCCcCeEEEE
Q 035717 82 PHIKWAKIVY--IEDTAEGLESALAARVGLFSGRNLGKQVAA 121 (125)
Q Consensus 82 ~l~~~g~i~~--~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~ 121 (125)
++++++++.. .+..+|+++|+++|++.+++++ ..|++++
T Consensus 325 ~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~-~~k~~i~ 365 (365)
T cd08277 325 SKYMNKKFDLDELITHVLPFEEINKGFDLMKSGE-CIRTVIT 365 (365)
T ss_pred HHHHCCCcChhHheeeEEchhhHHHHHHHHHCCC-CceEeeC
Confidence 9999998764 3455699999999999998877 4688874
No 52
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=99.38 E-value=1.2e-11 Score=83.81 Aligned_cols=109 Identities=24% Similarity=0.293 Sum_probs=84.3
Q ss_pred eeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHHHH
Q 035717 5 GIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIPHI 84 (125)
Q Consensus 5 g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 84 (125)
++|+++|++|+.....++++++++|+++.+|..... ..........+.+++++.+.+. ...+.++++++++
T Consensus 225 ~~d~~ld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 295 (334)
T PRK13771 225 GADIVIETVGTPTLEESLRSLNMGGKIIQIGNVDPS----PTYSLRLGYIILKDIEIIGHIS-----ATKRDVEEALKLV 295 (334)
T ss_pred CCcEEEEcCChHHHHHHHHHHhcCCEEEEEeccCCC----CCcccCHHHHHhcccEEEEecC-----CCHHHHHHHHHHH
Confidence 689999999998889999999999999999874321 1101223334567788877642 1244588999999
Q ss_pred HcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEEe
Q 035717 85 KWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 85 ~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 122 (125)
++|.+++.....|+++++++|++.+.++...||+++++
T Consensus 296 ~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~ 333 (334)
T PRK13771 296 AEGKIKPVIGAEVSLSEIDKALEELKDKSRIGKILVKP 333 (334)
T ss_pred HcCCCcceEeeeEcHHHHHHHHHHHHcCCCcceEEEec
Confidence 99999876556699999999999999888889999875
No 53
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=99.37 E-value=1.5e-11 Score=84.69 Aligned_cols=110 Identities=15% Similarity=0.110 Sum_probs=81.2
Q ss_pred CceeeEEEeCCchH-HHHHHHHhhccC-CEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHH
Q 035717 3 PEGIDIYFENVGGK-MLDAVLINMKIG-GQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMI 80 (125)
Q Consensus 3 ~~g~Dvv~d~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
+.++|++||++|+. .+..++++++++ |+++.+|..... .....+...+ .+++++.|++...+. ....++++
T Consensus 255 ~~~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~~g~~~~~----~~~~~~~~~~-~~~~~i~g~~~~~~~--~~~~~~~~ 327 (369)
T cd08301 255 GGGVDYSFECTGNIDAMISAFECVHDGWGVTVLLGVPHKD----AVFSTHPMNL-LNGRTLKGTLFGGYK--PKTDLPNL 327 (369)
T ss_pred CCCCCEEEECCCChHHHHHHHHHhhcCCCEEEEECcCCCC----cccccCHHHH-hcCCeEEEEecCCCC--hHHHHHHH
Confidence 34799999999865 688899999996 999999975421 1112232233 468999998765442 23457889
Q ss_pred HHHHHcCceeee--eecccchhHHHHHHHHHhcCCCcCeEEE
Q 035717 81 IPHIKWAKIVYI--EDTAEGLESALAARVGLFSGRNLGKQVA 120 (125)
Q Consensus 81 ~~l~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~gkvvi 120 (125)
++++.+|.+++. +..+|+|+|+++|++.+.+++. .|++|
T Consensus 328 ~~~~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~k~~~ 368 (369)
T cd08301 328 VEKYMKKELELEKFITHELPFSEINKAFDLLLKGEC-LRCIL 368 (369)
T ss_pred HHHHHcCCCCcHHheeeeecHHHHHHHHHHHHCCCc-eeEEe
Confidence 999999988753 4455999999999999998875 48876
No 54
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=99.37 E-value=1.3e-11 Score=84.86 Aligned_cols=110 Identities=19% Similarity=0.202 Sum_probs=83.7
Q ss_pred ceeeEEEeCCchH-HHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHH
Q 035717 4 EGIDIYFENVGGK-MLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIP 82 (125)
Q Consensus 4 ~g~Dvv~d~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (125)
+++|+++|++|+. ....++++++++|+++.+|..... .....+...++.+++++.+++... ..+.++++++
T Consensus 255 ~~~d~vld~vg~~~~~~~~~~~l~~~G~~v~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 326 (367)
T cd08263 255 RGVDVVVEALGKPETFKLALDVVRDGGRAVVVGLAPGG----ATAEIPITRLVRRGIKIIGSYGAR----PRQDLPELVG 326 (367)
T ss_pred CCCCEEEEeCCCHHHHHHHHHHHhcCCEEEEEccCCCC----CccccCHHHHhhCCeEEEecCCCC----cHHHHHHHHH
Confidence 5799999999987 788999999999999999864321 111234444556778877753211 1356888999
Q ss_pred HHHcCceeee--eecccchhHHHHHHHHHhcCCCcCeEEEE
Q 035717 83 HIKWAKIVYI--EDTAEGLESALAARVGLFSGRNLGKQVAA 121 (125)
Q Consensus 83 l~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~gkvvi~ 121 (125)
+++++.+.+. ....|+++++.+|++.+++++..||+||+
T Consensus 327 ll~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 367 (367)
T cd08263 327 LAASGKLDPEALVTHKYKLEEINEAYENLRKGLIHGRAIVE 367 (367)
T ss_pred HHHcCCCCcccceeEEecHHHHHHHHHHHhcCCccceeeeC
Confidence 9999999874 33459999999999999999888999874
No 55
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=99.36 E-value=1.7e-11 Score=84.44 Aligned_cols=111 Identities=17% Similarity=0.177 Sum_probs=78.5
Q ss_pred CceeeEEEeCCch-HHHHHHHHhhccC-CEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHH
Q 035717 3 PEGIDIYFENVGG-KMLDAVLINMKIG-GQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMI 80 (125)
Q Consensus 3 ~~g~Dvv~d~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
+.|+|+|||++|+ ..+..++++++++ |+++.+|..... .........+. ++.++.+++.+.+. ....+.++
T Consensus 254 ~~g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~g~~~~~----~~~~~~~~~~~-~~~~~~g~~~~~~~--~~~~~~~~ 326 (368)
T cd08300 254 DGGVDYTFECIGNVKVMRAALEACHKGWGTSVIIGVAAAG----QEISTRPFQLV-TGRVWKGTAFGGWK--SRSQVPKL 326 (368)
T ss_pred CCCCcEEEECCCChHHHHHHHHhhccCCCeEEEEccCCCC----CccccCHHHHh-hcCeEEEEEecccC--cHHHHHHH
Confidence 3479999999997 4789999999886 999999875310 11111222222 34566666554332 23457889
Q ss_pred HHHHHcCceeee--eecccchhHHHHHHHHHhcCCCcCeEEEE
Q 035717 81 IPHIKWAKIVYI--EDTAEGLESALAARVGLFSGRNLGKQVAA 121 (125)
Q Consensus 81 ~~l~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~gkvvi~ 121 (125)
++++++|++++. +..+|+|+|+++||+.+.+++. .|++|+
T Consensus 327 ~~~~~~g~l~~~~~i~~~~~le~~~~A~~~~~~~~~-~k~~~~ 368 (368)
T cd08300 327 VEDYMKGKIKVDEFITHTMPLDEINEAFDLMHAGKS-IRTVVK 368 (368)
T ss_pred HHHHHcCCCChhhceeeeEcHHHHHHHHHHHhCCCC-ceeeeC
Confidence 999999999864 4556999999999999988764 588863
No 56
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=99.36 E-value=1.2e-11 Score=84.37 Aligned_cols=108 Identities=20% Similarity=0.251 Sum_probs=83.6
Q ss_pred ceeeEEEeCCch-HHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHH
Q 035717 4 EGIDIYFENVGG-KMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIP 82 (125)
Q Consensus 4 ~g~Dvv~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (125)
+++|+++|++|. ..+..++++|+++|+++.+|..+.. ...+...+..++.++.+.+.... +.+.++++
T Consensus 242 ~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~------~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~ 310 (350)
T cd08240 242 GGVDAVIDFVNNSATASLAFDILAKGGKLVLVGLFGGE------ATLPLPLLPLRALTIQGSYVGSL-----EELRELVA 310 (350)
T ss_pred CCCcEEEECCCCHHHHHHHHHHhhcCCeEEEECCCCCC------CcccHHHHhhcCcEEEEcccCCH-----HHHHHHHH
Confidence 379999999984 6789999999999999999865421 11223334457788887765432 45788899
Q ss_pred HHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEEe
Q 035717 83 HIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 83 l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 122 (125)
++++|.+.+.....|+++++.+|++.+.+++..||+++++
T Consensus 311 ll~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~~ 350 (350)
T cd08240 311 LAKAGKLKPIPLTERPLSDVNDALDDLKAGKVVGRAVLKP 350 (350)
T ss_pred HHHcCCCccceeeEEcHHHHHHHHHHHHcCCccceEEecC
Confidence 9999998876555699999999999999988889999863
No 57
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=99.35 E-value=9.5e-12 Score=86.39 Aligned_cols=114 Identities=15% Similarity=0.112 Sum_probs=77.1
Q ss_pred ceeeEEEeCCchH---------------HHHHHHHhhccCCEEEEEccccccCCCCC-------CCcccHHHHHhcccee
Q 035717 4 EGIDIYFENVGGK---------------MLDAVLINMKIGGQIAVCGMISQYNLDEP-------KGIHNLTRLILKQVRM 61 (125)
Q Consensus 4 ~g~Dvv~d~~g~~---------------~~~~~~~~l~~~G~~v~~g~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 61 (125)
+|+|++||++|.+ .+++++++++++|+++.+|.......... ...+.......+++++
T Consensus 253 ~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i 332 (393)
T TIGR02819 253 PEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLYVTEDPGAVDAAAKTGSLSIRFGLGWAKSHSF 332 (393)
T ss_pred CCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeecCCcccccccccccccccccchHHhhccCceE
Confidence 4799999999974 69999999999999999998531100000 0011122233444555
Q ss_pred eeeeecccccchHHHHHHHHHHHHcCceeee--ee-cccchhHHHHHHHHHhcCCCcCeEEEEec
Q 035717 62 EGFLVSDYNHLYPKFLEMIIPHIKWAKIVYI--ED-TAEGLESALAARVGLFSGRNLGKQVAAVA 123 (125)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~--~~-~~~~l~~~~~a~~~~~~~~~~gkvvi~~~ 123 (125)
.+... ...+.+.++++++++|++++. +. .+|+|+|+++||+.+.+++ .+|++|++.
T Consensus 333 ~g~~~-----~~~~~~~~~~~~~~~g~i~~~~~i~~~~~~l~~~~~a~~~~~~~~-~~Kvvi~~~ 391 (393)
T TIGR02819 333 HTGQT-----PVMKYNRNLMQAILHDRVQIAKAVNVTVISLDDAPEGYAEFDAGA-AKKFVIDPH 391 (393)
T ss_pred EeccC-----ChhhhHHHHHHHHHcCCCCHHHceecceecHHHHHHHHHHHhhCC-ceEEEEeCC
Confidence 54211 111234678999999998864 33 4599999999999998874 589999864
No 58
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=99.34 E-value=5.1e-11 Score=80.52 Aligned_cols=118 Identities=23% Similarity=0.298 Sum_probs=88.2
Q ss_pred CceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeeccccc-----chHHHH
Q 035717 3 PEGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNH-----LYPKFL 77 (125)
Q Consensus 3 ~~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 77 (125)
.+++|++||++|+..+..++++++++|+++.+|..... .....+...+..++.++.++....... ...+.+
T Consensus 208 ~~~~d~~i~~~~~~~~~~~~~~l~~~g~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (334)
T PTZ00354 208 EKGVNLVLDCVGGSYLSETAEVLAVDGKWIVYGFMGGA----KVEKFNLLPLLRKRASIIFSTLRSRSDEYKADLVASFE 283 (334)
T ss_pred CCCceEEEECCchHHHHHHHHHhccCCeEEEEecCCCC----cccccCHHHHHhhCCEEEeeeccccchhhhHHHHHHHH
Confidence 35899999999998899999999999999999854321 111134445556667888876543221 123556
Q ss_pred HHHHHHHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEEecC
Q 035717 78 EMIIPHIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAAVAS 124 (125)
Q Consensus 78 ~~~~~l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~~~ 124 (125)
++++++++++.+.+.....+++++++++++.+.+++..||+++...+
T Consensus 284 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kvvv~~~~ 330 (334)
T PTZ00354 284 REVLPYMEEGEIKPIVDRTYPLEEVAEAHTFLEQNKNIGKVVLTVNE 330 (334)
T ss_pred HHHHHHHHCCCccCccccEEcHHHHHHHHHHHHhCCCCceEEEecCC
Confidence 78889999999987655569999999999999988878999997643
No 59
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.33 E-value=3.6e-11 Score=81.22 Aligned_cols=109 Identities=27% Similarity=0.289 Sum_probs=86.9
Q ss_pred ceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHHH
Q 035717 4 EGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIPH 83 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (125)
+++|+++|++|+.....++++++++|+++.+|..... ........++.+++++.++.... .+.+.+++++
T Consensus 228 ~~~d~~i~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l 297 (336)
T cd08276 228 RGVDHVVEVGGPGTLAQSIKAVAPGGVISLIGFLSGF-----EAPVLLLPLLTKGATLRGIAVGS-----RAQFEAMNRA 297 (336)
T ss_pred CCCcEEEECCChHHHHHHHHhhcCCCEEEEEccCCCC-----ccCcCHHHHhhcceEEEEEecCc-----HHHHHHHHHH
Confidence 5899999999988889999999999999999864421 11224455678899999887543 3458888899
Q ss_pred HHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEEe
Q 035717 84 IKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 84 ~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 122 (125)
++++.+.+.....|++++++++++.+.++...||+++++
T Consensus 298 ~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~ 336 (336)
T cd08276 298 IEAHRIRPVIDRVFPFEEAKEAYRYLESGSHFGKVVIRV 336 (336)
T ss_pred HHcCCcccccCcEEeHHHHHHHHHHHHhCCCCceEEEeC
Confidence 999988876555699999999999999888889998863
No 60
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=99.33 E-value=5.1e-11 Score=79.61 Aligned_cols=114 Identities=18% Similarity=0.163 Sum_probs=85.1
Q ss_pred ceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeeccc---ccchHHHHHHH
Q 035717 4 EGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDY---NHLYPKFLEMI 80 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 80 (125)
+++|+++||+|+.....++++++++|+++.+|..... ....+...+..+++++.+.....+ +....+.+.++
T Consensus 204 ~~~d~vl~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (320)
T cd05286 204 RGVDVVYDGVGKDTFEGSLDSLRPRGTLVSFGNASGP-----VPPFDLLRLSKGSLFLTRPSLFHYIATREELLARAAEL 278 (320)
T ss_pred CCeeEEEECCCcHhHHHHHHhhccCcEEEEEecCCCC-----CCccCHHHHHhcCcEEEEEehhhhcCCHHHHHHHHHHH
Confidence 5799999999988888999999999999999864321 111223333367777766543222 22345667888
Q ss_pred HHHHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEEe
Q 035717 81 IPHIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 81 ~~l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 122 (125)
++++.++.+.+.....|+++++++|++++.++...||+++++
T Consensus 279 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~vv~~~ 320 (320)
T cd05286 279 FDAVASGKLKVEIGKRYPLADAAQAHRDLESRKTTGKLLLIP 320 (320)
T ss_pred HHHHHCCCCcCcccceEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence 999999998876555699999999999999988889999864
No 61
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.33 E-value=5e-11 Score=80.59 Aligned_cols=119 Identities=34% Similarity=0.609 Sum_probs=86.6
Q ss_pred CceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCC-CC--C-cccHHHHHhccceeeeeeecccccchHHHHH
Q 035717 3 PEGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDE-PK--G-IHNLTRLILKQVRMEGFLVSDYNHLYPKFLE 78 (125)
Q Consensus 3 ~~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~-~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (125)
++++|++||++|+.....++++++++|+++.+|......... .. . .......+.+++++.++....+.....+.+.
T Consensus 205 ~~~vd~v~~~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (329)
T cd08250 205 PKGVDVVYESVGGEMFDTCVDNLALKGRLIVIGFISGYQSGTGPSPVKGATLPPKLLAKSASVRGFFLPHYAKLIPQHLD 284 (329)
T ss_pred CCCCeEEEECCcHHHHHHHHHHhccCCeEEEEecccCCcccCcccccccccccHHHhhcCceEEEEEhHHHHHHHHHHHH
Confidence 357999999999988999999999999999998654210000 00 0 0011234667888888765433222456788
Q ss_pred HHHHHHHcCceeeeee--cccchhHHHHHHHHHhcCCCcCeEEEE
Q 035717 79 MIIPHIKWAKIVYIED--TAEGLESALAARVGLFSGRNLGKQVAA 121 (125)
Q Consensus 79 ~~~~l~~~g~i~~~~~--~~~~l~~~~~a~~~~~~~~~~gkvvi~ 121 (125)
++++++++|.+.+... .+++++++++|++++.+++..||++++
T Consensus 285 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~kvvv~ 329 (329)
T cd08250 285 RLLQLYQRGKLVCEVDPTRFRGLESVADAVDYLYSGKNIGKVVVE 329 (329)
T ss_pred HHHHHHHCCCeeeeECCccccCHHHHHHHHHHHHcCCCCceEEeC
Confidence 8999999999987542 348999999999999988888998863
No 62
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=99.33 E-value=4.1e-11 Score=82.52 Aligned_cols=111 Identities=18% Similarity=0.143 Sum_probs=77.8
Q ss_pred ceeeEEEeCCch-HHHHHHHHhhccC-CEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHH
Q 035717 4 EGIDIYFENVGG-KMLDAVLINMKIG-GQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMII 81 (125)
Q Consensus 4 ~g~Dvv~d~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (125)
.|+|++||++|+ ..+..++++++++ |+++.+|..... .........+. ++..+.+++.+... ....+.+++
T Consensus 254 ~g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~g~~~~~----~~~~~~~~~~~-~~~~~~g~~~~~~~--~~~~~~~~~ 326 (368)
T TIGR02818 254 GGVDYSFECIGNVNVMRAALECCHKGWGESIIIGVAGAG----QEISTRPFQLV-TGRVWRGSAFGGVK--GRTELPGIV 326 (368)
T ss_pred CCCCEEEECCCCHHHHHHHHHHhhcCCCeEEEEeccCCC----CcccccHHHHh-ccceEEEeeccCCC--cHHHHHHHH
Confidence 479999999996 4688999999886 999999974310 11112222233 34456666543221 123588899
Q ss_pred HHHHcCceeee--eecccchhHHHHHHHHHhcCCCcCeEEEEe
Q 035717 82 PHIKWAKIVYI--EDTAEGLESALAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 82 ~l~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 122 (125)
+++.+|++++. +..+|+|+|+++|++.+++++. .|++|++
T Consensus 327 ~~~~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~-~k~~v~~ 368 (368)
T TIGR02818 327 EQYMKGEIALDDFVTHTMPLEDINEAFDLMHEGKS-IRTVIHY 368 (368)
T ss_pred HHHHCCCCCchhheeEEecHHHHHHHHHHHhCCCc-eeEEeeC
Confidence 99999998753 4556999999999999988754 6998864
No 63
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.31 E-value=5e-11 Score=81.04 Aligned_cols=109 Identities=16% Similarity=0.125 Sum_probs=83.9
Q ss_pred CceeeEEEeCCc-hHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHH
Q 035717 3 PEGIDIYFENVG-GKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMII 81 (125)
Q Consensus 3 ~~g~Dvv~d~~g-~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (125)
.+++|+++|+.+ +.....++++++++|+++.+|.... .....+...+..++.++.+..... .+.+++++
T Consensus 232 ~~~vd~vl~~~~~~~~~~~~~~~l~~~g~~v~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 301 (341)
T cd08297 232 GGGAHAVVVTAVSAAAYEQALDYLRPGGTLVCVGLPPG-----GFIPLDPFDLVLRGITIVGSLVGT-----RQDLQEAL 301 (341)
T ss_pred CCCCCEEEEcCCchHHHHHHHHHhhcCCEEEEecCCCC-----CCCCCCHHHHHhcccEEEEeccCC-----HHHHHHHH
Confidence 357999999665 5678899999999999999986431 111234445567888888754322 34588899
Q ss_pred HHHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEEe
Q 035717 82 PHIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 82 ~l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 122 (125)
++++++.+.+.+ ..|+++++++|++.+.++...||+++++
T Consensus 302 ~~~~~~~l~~~~-~~~~~~~~~~a~~~~~~~~~~gkvvi~~ 341 (341)
T cd08297 302 EFAARGKVKPHI-QVVPLEDLNEVFEKMEEGKIAGRVVVDF 341 (341)
T ss_pred HHHHcCCCccee-EEEcHHHHHHHHHHHHcCCccceEEEeC
Confidence 999999998644 4589999999999999988899999875
No 64
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=99.31 E-value=5.1e-11 Score=80.67 Aligned_cols=107 Identities=24% Similarity=0.322 Sum_probs=83.7
Q ss_pred ceeeEEEeCCch-HHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHH
Q 035717 4 EGIDIYFENVGG-KMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIP 82 (125)
Q Consensus 4 ~g~Dvv~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (125)
+++|+++|++|. ..+..++++|+++|+++.+|.... ....+...+..++..+.+.+... .+.++++++
T Consensus 231 ~~~D~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 299 (338)
T cd08254 231 GGFDVIFDFVGTQPTFEDAQKAVKPGGRIVVVGLGRD------KLTVDLSDLIARELRIIGSFGGT-----PEDLPEVLD 299 (338)
T ss_pred CCceEEEECCCCHHHHHHHHHHhhcCCEEEEECCCCC------CCccCHHHHhhCccEEEEeccCC-----HHHHHHHHH
Confidence 579999999985 578899999999999999986431 11234455667777777765322 345888999
Q ss_pred HHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEEe
Q 035717 83 HIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 83 l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 122 (125)
++++|.+.+. ...++++++.++++.+.+++..||+|+++
T Consensus 300 ll~~~~l~~~-~~~~~~~~~~~a~~~~~~~~~~~kvv~~~ 338 (338)
T cd08254 300 LIAKGKLDPQ-VETRPLDEIPEVLERLHKGKVKGRVVLVP 338 (338)
T ss_pred HHHcCCCccc-ceeEcHHHHHHHHHHHHcCCccceEEEeC
Confidence 9999999876 34599999999999999999899999875
No 65
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=99.31 E-value=3.6e-11 Score=81.65 Aligned_cols=106 Identities=22% Similarity=0.205 Sum_probs=82.3
Q ss_pred ceeeEEEeCCch-HHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHH
Q 035717 4 EGIDIYFENVGG-KMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIP 82 (125)
Q Consensus 4 ~g~Dvv~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (125)
.++|+++|++|+ .....++++++++|+++.+|.... ...+...++.+++++.+..... .+.++++++
T Consensus 234 ~~~dvvld~~g~~~~~~~~~~~l~~~g~~i~~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 301 (340)
T cd05284 234 RGADAVIDFVGSDETLALAAKLLAKGGRYVIVGYGGH-------GRLPTSDLVPTEISVIGSLWGT-----RAELVEVVA 301 (340)
T ss_pred CCCCEEEEcCCCHHHHHHHHHHhhcCCEEEEEcCCCC-------CccCHHHhhhcceEEEEEeccc-----HHHHHHHHH
Confidence 479999999996 678899999999999999986431 1122333456788888865432 235788899
Q ss_pred HHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEEe
Q 035717 83 HIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 83 l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 122 (125)
++++|.+++... .|+++++++|++.+++++..||+++.+
T Consensus 302 ~l~~g~l~~~~~-~~~~~~~~~a~~~~~~~~~~gkvv~~~ 340 (340)
T cd05284 302 LAESGKVKVEIT-KFPLEDANEALDRLREGRVTGRAVLVP 340 (340)
T ss_pred HHHhCCCCcceE-EEeHHHHHHHHHHHHcCCccceEEecC
Confidence 999999886443 489999999999999998889999864
No 66
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.31 E-value=4.9e-11 Score=81.51 Aligned_cols=111 Identities=16% Similarity=0.119 Sum_probs=78.0
Q ss_pred ceeeEEEeCCch-HHHHHHHHhhccCCEEEEEccccccCCCCCCCcccH--HHHHhccceeeeeeecccccchHHHHHHH
Q 035717 4 EGIDIYFENVGG-KMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNL--TRLILKQVRMEGFLVSDYNHLYPKFLEMI 80 (125)
Q Consensus 4 ~g~Dvv~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
+++|+++|++|+ ..+..++++++++|+++.+|..... .....+. .....+..++.+.+.... .+.++++
T Consensus 234 ~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~ 305 (351)
T cd08285 234 KGVDAVIIAGGGQDTFEQALKVLKPGGTISNVNYYGED----DYLPIPREEWGVGMGHKTINGGLCPGG----RLRMERL 305 (351)
T ss_pred CCCcEEEECCCCHHHHHHHHHHhhcCCEEEEecccCCC----ceeecChhhhhhhccccEEEEeecCCc----cccHHHH
Confidence 579999999996 4789999999999999999875421 1011111 112234455555432221 2348889
Q ss_pred HHHHHcCceeee---eecccchhHHHHHHHHHhcCC-CcCeEEEEe
Q 035717 81 IPHIKWAKIVYI---EDTAEGLESALAARVGLFSGR-NLGKQVAAV 122 (125)
Q Consensus 81 ~~l~~~g~i~~~---~~~~~~l~~~~~a~~~~~~~~-~~gkvvi~~ 122 (125)
++++++|++++. ...+|+++++++|++++++++ ..+|++|.+
T Consensus 306 ~~~~~~g~i~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~~~ 351 (351)
T cd08285 306 ASLIEYGRVDPSKLLTHHFFGFDDIEEALMLMKDKPDDLIKPVIIF 351 (351)
T ss_pred HHHHHcCCCChhhceeccccCHHHHHHHHHHHhcccCCeEEEEEeC
Confidence 999999999982 333489999999999999876 468998864
No 67
>PRK10083 putative oxidoreductase; Provisional
Probab=99.30 E-value=7.1e-11 Score=80.23 Aligned_cols=108 Identities=10% Similarity=0.033 Sum_probs=79.9
Q ss_pred eeeEEEeCCch-HHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHHH
Q 035717 5 GIDIYFENVGG-KMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIPH 83 (125)
Q Consensus 5 g~Dvv~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (125)
++|++||++|+ ..+..++++++++|+++.+|.... + ...+......+++++.+... ..+.+++++++
T Consensus 228 ~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-----~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 295 (339)
T PRK10083 228 KPTLIIDAACHPSILEEAVTLASPAARIVLMGFSSE-----P-SEIVQQGITGKELSIFSSRL------NANKFPVVIDW 295 (339)
T ss_pred CCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCC-----C-ceecHHHHhhcceEEEEEec------ChhhHHHHHHH
Confidence 45799999995 578999999999999999987431 1 12233344456666665432 23458889999
Q ss_pred HHcCceeee--eecccchhHHHHHHHHHhcCC-CcCeEEEEecC
Q 035717 84 IKWAKIVYI--EDTAEGLESALAARVGLFSGR-NLGKQVAAVAS 124 (125)
Q Consensus 84 ~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~-~~gkvvi~~~~ 124 (125)
+++|.+.+. +..+|+++++++|++.+.++. ..+|+++++.+
T Consensus 296 ~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~kvvv~~~~ 339 (339)
T PRK10083 296 LSKGLIDPEKLITHTFDFQHVADAIELFEKDQRHCCKVLLTFAE 339 (339)
T ss_pred HHcCCCChHHheeeeecHHHHHHHHHHHhcCCCceEEEEEecCC
Confidence 999999873 455699999999999998653 56899998754
No 68
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=99.29 E-value=5.4e-11 Score=80.20 Aligned_cols=104 Identities=15% Similarity=0.149 Sum_probs=78.8
Q ss_pred ceeeEEEeCCch-HHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHH
Q 035717 4 EGIDIYFENVGG-KMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIP 82 (125)
Q Consensus 4 ~g~Dvv~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (125)
+++|+++|++|+ ..+..++++++++|+++..+.... ....+...+..++.++.+.+... ++++++
T Consensus 213 ~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~~~~~~------~~~~~~~~~~~~~~~i~~~~~~~--------~~~~~~ 278 (319)
T cd08242 213 GGFDVVVEATGSPSGLELALRLVRPRGTVVLKSTYAG------PASFDLTKAVVNEITLVGSRCGP--------FAPALR 278 (319)
T ss_pred CCCCEEEECCCChHHHHHHHHHhhcCCEEEEEcccCC------CCccCHHHheecceEEEEEeccc--------HHHHHH
Confidence 579999999987 468899999999999998765321 12234445566777887765321 778889
Q ss_pred HHHcCcee--eeeecccchhHHHHHHHHHhcCCCcCeEEEEe
Q 035717 83 HIKWAKIV--YIEDTAEGLESALAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 83 l~~~g~i~--~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 122 (125)
++++|+++ +.+..+|+++++.+|++.+++++ .+|++|++
T Consensus 279 ~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~-~~k~vi~~ 319 (319)
T cd08242 279 LLRKGLVDVDPLITAVYPLEEALEAFERAAEPG-ALKVLLRP 319 (319)
T ss_pred HHHcCCCChhhceEEEEeHHHHHHHHHHHhcCC-ceEEEeCC
Confidence 99999994 44455699999999999998766 58999864
No 69
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=99.29 E-value=4.5e-11 Score=82.81 Aligned_cols=109 Identities=16% Similarity=0.126 Sum_probs=81.7
Q ss_pred ceeeEEEeCCchH----------------------HHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhcccee
Q 035717 4 EGIDIYFENVGGK----------------------MLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRM 61 (125)
Q Consensus 4 ~g~Dvv~d~~g~~----------------------~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (125)
+++|++||++|++ .+..++++++++|+++.+|..... ....+...++.+++++
T Consensus 253 ~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~~~~~-----~~~~~~~~~~~~~~~i 327 (386)
T cd08283 253 RGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGVYGGT-----VNKFPIGAAMNKGLTL 327 (386)
T ss_pred CCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcCCCCC-----cCccCHHHHHhCCcEE
Confidence 3799999999753 578899999999999999875421 1122333456778888
Q ss_pred eeeeecccccchHHHHHHHHHHHHcCceeee--eecccchhHHHHHHHHHhcCC-CcCeEEEEe
Q 035717 62 EGFLVSDYNHLYPKFLEMIIPHIKWAKIVYI--EDTAEGLESALAARVGLFSGR-NLGKQVAAV 122 (125)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~-~~gkvvi~~ 122 (125)
.+... ...+.++++++++++|++.+. ...+|+++++.+|++.+.++. ..+|++|++
T Consensus 328 ~~~~~-----~~~~~~~~~~~~l~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~~~ 386 (386)
T cd08283 328 RMGQT-----HVQRYLPRLLELIESGELDPSFIITHRLPLEDAPEAYKIFDKKEDGCIKVVLKP 386 (386)
T ss_pred EeccC-----CchHHHHHHHHHHHcCCCChhHceEEEecHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 77632 124568889999999999864 334599999999999998876 468999853
No 70
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=99.28 E-value=9.9e-11 Score=79.10 Aligned_cols=109 Identities=24% Similarity=0.358 Sum_probs=84.8
Q ss_pred ceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHHH
Q 035717 4 EGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIPH 83 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (125)
+++|++++++|+..+...+++++++|+++.+|..... ....+....+.+++++.+..... ...+.+++++
T Consensus 234 ~~~d~~i~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 303 (342)
T cd08266 234 RGVDVVVEHVGAATWEKSLKSLARGGRLVTCGATTGY-----EAPIDLRHVFWRQLSILGSTMGT-----KAELDEALRL 303 (342)
T ss_pred CCCcEEEECCcHHHHHHHHHHhhcCCEEEEEecCCCC-----CCCcCHHHHhhcceEEEEEecCC-----HHHHHHHHHH
Confidence 4799999999998889999999999999999864421 11223334466778887765432 2357888999
Q ss_pred HHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEEe
Q 035717 84 IKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 84 ~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 122 (125)
++++.+.+.....|+++++++|++.+.++...||+++++
T Consensus 304 l~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~ 342 (342)
T cd08266 304 VFRGKLKPVIDSVFPLEEAAEAHRRLESREQFGKIVLTP 342 (342)
T ss_pred HHcCCcccceeeeEcHHHHHHHHHHHHhCCCCceEEEeC
Confidence 999998876556699999999999999888889999863
No 71
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.28 E-value=1.1e-10 Score=78.42 Aligned_cols=111 Identities=18% Similarity=0.176 Sum_probs=81.3
Q ss_pred ceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHH--HhccceeeeeeecccccchHHHHHHHH
Q 035717 4 EGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRL--ILKQVRMEGFLVSDYNHLYPKFLEMII 81 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (125)
+++|+++|++|+..+..++++++++|+++.+|...... .......... ..+++++.++..... ....+++++
T Consensus 207 ~~~d~vl~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 280 (320)
T cd08243 207 GGFDKVLELVGTATLKDSLRHLRPGGIVCMTGLLGGQW---TLEDFNPMDDIPSGVNLTLTGSSSGDV---PQTPLQELF 280 (320)
T ss_pred CCceEEEECCChHHHHHHHHHhccCCEEEEEccCCCCc---ccCCcchhhhhhhccceEEEecchhhh---hHHHHHHHH
Confidence 57999999999988999999999999999998643211 0001111111 245666666543221 234688899
Q ss_pred HHHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEE
Q 035717 82 PHIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVA 120 (125)
Q Consensus 82 ~l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi 120 (125)
++++++.+++.....|+++++++|++.+.++...||+++
T Consensus 281 ~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~kvvv 319 (320)
T cd08243 281 DFVAAGHLDIPPSKVFTFDEIVEAHAYMESNRAFGKVVV 319 (320)
T ss_pred HHHHCCceecccccEEcHHHHHHHHHHHHhCCCCCcEEe
Confidence 999999998765556999999999999998888889876
No 72
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=99.28 E-value=9.9e-11 Score=79.65 Aligned_cols=114 Identities=18% Similarity=0.171 Sum_probs=83.9
Q ss_pred ceeeEEEeCCch-HHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHH
Q 035717 4 EGIDIYFENVGG-KMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIP 82 (125)
Q Consensus 4 ~g~Dvv~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (125)
+++|+++||+|. ..+..++++|+++|+++.+|..... .......+..++.++.++.+++.........+.++++++
T Consensus 226 ~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (343)
T cd08236 226 RGADLVIEAAGSPATIEQALALARPGGKVVLVGIPYGD---VTLSEEAFEKILRKELTIQGSWNSYSAPFPGDEWRTALD 302 (343)
T ss_pred CCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcccCCC---cccccCCHHHHHhcCcEEEEEeeccccccchhhHHHHHH
Confidence 469999999975 5688999999999999999864311 111122344556788999888764332233566888999
Q ss_pred HHHcCcee--eeeecccchhHHHHHHHHHhc-CCCcCeEEE
Q 035717 83 HIKWAKIV--YIEDTAEGLESALAARVGLFS-GRNLGKQVA 120 (125)
Q Consensus 83 l~~~g~i~--~~~~~~~~l~~~~~a~~~~~~-~~~~gkvvi 120 (125)
++++|.+. +.....+++++++++++.+.+ +...||+|+
T Consensus 303 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~v~ 343 (343)
T cd08236 303 LLASGKIKVEPLITHRLPLEDGPAAFERLADREEFSGKVLL 343 (343)
T ss_pred HHHcCCCChHHheeeeecHHHHHHHHHHHHcCCCCeeEEeC
Confidence 99999986 334455999999999999998 666788874
No 73
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=99.28 E-value=1.4e-10 Score=78.76 Aligned_cols=107 Identities=20% Similarity=0.207 Sum_probs=81.0
Q ss_pred ceeeEEEeCCch-HHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHH
Q 035717 4 EGIDIYFENVGG-KMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIP 82 (125)
Q Consensus 4 ~g~Dvv~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (125)
+++|+++|++|+ ..+...+++|+++|+++.+|.... . ...+...++.+++++.++.. ..+.++++++
T Consensus 230 ~~vd~vld~~g~~~~~~~~~~~L~~~G~~v~~g~~~~-----~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 297 (339)
T cd08232 230 GDFDVVFEASGAPAALASALRVVRPGGTVVQVGMLGG-----P-VPLPLNALVAKELDLRGSFR------FDDEFAEAVR 297 (339)
T ss_pred CCccEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCC-----C-ccCcHHHHhhcceEEEEEec------CHHHHHHHHH
Confidence 469999999995 578899999999999999986331 1 11233334567777777642 2235788999
Q ss_pred HHHcCceeee--eecccchhHHHHHHHHHhcCCCcCeEEEEe
Q 035717 83 HIKWAKIVYI--EDTAEGLESALAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 83 l~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 122 (125)
++++|.+++. +..+|+++++++|++.+.+++..||+|+++
T Consensus 298 ~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~~ 339 (339)
T cd08232 298 LLAAGRIDVRPLITAVFPLEEAAEAFALAADRTRSVKVQLSF 339 (339)
T ss_pred HHHcCCCCchhheeEEecHHHHHHHHHHHHhCCCceeEEEeC
Confidence 9999998643 345599999999999999888889999864
No 74
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=99.28 E-value=5.5e-11 Score=78.05 Aligned_cols=114 Identities=18% Similarity=0.239 Sum_probs=90.0
Q ss_pred eeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccc------cchHHHHH
Q 035717 5 GIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYN------HLYPKFLE 78 (125)
Q Consensus 5 g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 78 (125)
.+-..|||+||.+.....+.|..+|++|-+|+.+.+ +.+.+...++++.+.++|+|+..|. +...+..+
T Consensus 233 ~prLalNcVGGksa~~iar~L~~GgtmvTYGGMSkq-----Pv~~~ts~lIFKdl~~rGfWvt~W~~~~~~pe~~~~~i~ 307 (354)
T KOG0025|consen 233 RPRLALNCVGGKSATEIARYLERGGTMVTYGGMSKQ-----PVTVPTSLLIFKDLKLRGFWVTRWKKEHKSPEERKEMID 307 (354)
T ss_pred CceEEEeccCchhHHHHHHHHhcCceEEEecCccCC-----CcccccchheeccceeeeeeeeehhhccCCcHHHHHHHH
Confidence 467789999999888889999999999999998742 2344566789999999999997764 22346778
Q ss_pred HHHHHHHcCceeeeeecccchhHHHHHHHHHhcCC-CcCeEEEEec
Q 035717 79 MIIPHIKWAKIVYIEDTAEGLESALAARVGLFSGR-NLGKQVAAVA 123 (125)
Q Consensus 79 ~~~~l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~-~~gkvvi~~~ 123 (125)
++.++++.|++..+.....+|++...|++...+.. ..||-+|.+.
T Consensus 308 ~~~~l~~~G~i~~~~~e~v~L~~~~tald~~L~~~~~~~Kq~i~~e 353 (354)
T KOG0025|consen 308 ELCDLYRRGKLKAPNCEKVPLADHKTALDAALSKFGKSGKQIIVLE 353 (354)
T ss_pred HHHHHHHcCeeccccceeeechhhhHHHHHHHHHhccCCceEEEec
Confidence 89999999999988777788988888887766543 3367777653
No 75
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.28 E-value=6.3e-11 Score=80.55 Aligned_cols=107 Identities=18% Similarity=0.182 Sum_probs=79.3
Q ss_pred ceeeEEEeCCch-HHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHH
Q 035717 4 EGIDIYFENVGG-KMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIP 82 (125)
Q Consensus 4 ~g~Dvv~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (125)
+++|+++|++|+ ..+..++++++++|+++.+|..... . .........++.++.++.... .+.+.++++
T Consensus 232 ~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~---~---~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 300 (341)
T cd08262 232 PKPAVIFECVGAPGLIQQIIEGAPPGGRIVVVGVCMES---D---NIEPALAIRKELTLQFSLGYT-----PEEFADALD 300 (341)
T ss_pred CCCCEEEECCCCHHHHHHHHHHhccCCEEEEECCCCCC---C---ccCHHHHhhcceEEEEEeccc-----HHHHHHHHH
Confidence 479999999997 4788899999999999999875321 1 111222245667776543221 235788999
Q ss_pred HHHcCceeeee--ecccchhHHHHHHHHHhcCCCcCeEEEE
Q 035717 83 HIKWAKIVYIE--DTAEGLESALAARVGLFSGRNLGKQVAA 121 (125)
Q Consensus 83 l~~~g~i~~~~--~~~~~l~~~~~a~~~~~~~~~~gkvvi~ 121 (125)
++++|.+.+.. ...|+++++++|++.+.+++..||+|++
T Consensus 301 l~~~g~i~~~~~i~~~~~l~~~~~a~~~~~~~~~~~kvvv~ 341 (341)
T cd08262 301 ALAEGKVDVAPMVTGTVGLDGVPDAFEALRDPEHHCKILVD 341 (341)
T ss_pred HHHcCCCChHHheEEEeeHHHHHHHHHHHhcCCCceEEEeC
Confidence 99999998642 3459999999999999999888999874
No 76
>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.27 E-value=2.2e-10 Score=77.36 Aligned_cols=120 Identities=23% Similarity=0.252 Sum_probs=87.6
Q ss_pred CceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCC-----------CcccHHHHHhccceeeeeeeccc--
Q 035717 3 PEGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPK-----------GIHNLTRLILKQVRMEGFLVSDY-- 69 (125)
Q Consensus 3 ~~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~-- 69 (125)
++++|+++|++|+.....++++++++|+++.+|.....+..... .......++.+++++.++.....
T Consensus 204 ~~~~d~v~~~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (337)
T cd08275 204 PEGVDIVLDALGGEDTRKSYDLLKPMGRLVVYGAANLVTGEKRSWFKLAKKWWNRPKVDPMKLISENKSVLGFNLGWLFE 283 (337)
T ss_pred CCCceEEEECCcHHHHHHHHHhhccCcEEEEEeecCCcCcccccccccccccccccccCHHHHhhcCceEEEeechhhhh
Confidence 45799999999998888999999999999999865421110000 01122345677888888754321
Q ss_pred -ccchHHHHHHHHHHHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEEe
Q 035717 70 -NHLYPKFLEMIIPHIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 70 -~~~~~~~~~~~~~l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 122 (125)
.......+.+++++++++.+.+.....|++++++++++.+.++...||+++++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvv~~~ 337 (337)
T cd08275 284 ERELLTEVMDKLLKLYEEGKIKPKIDSVFPFEEVGEAMRRLQSRKNIGKVVLTP 337 (337)
T ss_pred ChHHHHHHHHHHHHHHHCCCCCCceeeEEcHHHHHHHHHHHHcCCCcceEEEeC
Confidence 11233567889999999998876556699999999999999888889999864
No 77
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=99.26 E-value=1e-10 Score=79.59 Aligned_cols=108 Identities=18% Similarity=0.143 Sum_probs=80.4
Q ss_pred ceeeEEEeCCchH-HHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHH
Q 035717 4 EGIDIYFENVGGK-MLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIP 82 (125)
Q Consensus 4 ~g~Dvv~d~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (125)
+++|++||++|+. .+..++++++++|+++.+|.....+ ...........+++.+.+++... .+.++++++
T Consensus 233 ~~vd~vld~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~ 303 (343)
T cd08235 233 RGADVVIVATGSPEAQAQALELVRKGGRILFFGGLPKGS----TVNIDPNLIHYREITITGSYAAS-----PEDYKEALE 303 (343)
T ss_pred cCCCEEEECCCChHHHHHHHHHhhcCCEEEEEeccCCCC----CcccCHHHHhhCceEEEEEecCC-----hhhHHHHHH
Confidence 4699999999964 7889999999999999998643211 11223344556677776654322 235788899
Q ss_pred HHHcCceee--eeecccchhHHHHHHHHHhcCCCcCeEEEE
Q 035717 83 HIKWAKIVY--IEDTAEGLESALAARVGLFSGRNLGKQVAA 121 (125)
Q Consensus 83 l~~~g~i~~--~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~ 121 (125)
+++++.+.+ .+...|+++++.+|++++.+++ .||+|++
T Consensus 304 l~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~-~~k~vi~ 343 (343)
T cd08235 304 LIASGKIDVKDLITHRFPLEDIEEAFELAADGK-SLKIVIT 343 (343)
T ss_pred HHHcCCCChHHheeeEeeHHHHHHHHHHHhCCC-cEEEEeC
Confidence 999999873 3445599999999999999988 8999874
No 78
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=99.26 E-value=1.4e-10 Score=78.87 Aligned_cols=109 Identities=19% Similarity=0.250 Sum_probs=80.7
Q ss_pred ceeeEEEeCCch-HHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHH
Q 035717 4 EGIDIYFENVGG-KMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIP 82 (125)
Q Consensus 4 ~g~Dvv~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (125)
+++|++|||+|+ ..++.++++++++|+++.+|.... . .......+..+++++.+++.... .+.+.++++
T Consensus 231 ~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~----~--~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~ 300 (341)
T PRK05396 231 EGFDVGLEMSGAPSAFRQMLDNMNHGGRIAMLGIPPG----D--MAIDWNKVIFKGLTIKGIYGREM----FETWYKMSA 300 (341)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCC----C--CcccHHHHhhcceEEEEEEccCc----cchHHHHHH
Confidence 589999999885 568899999999999999986431 1 11234556677888887653222 233667888
Q ss_pred HHHcC-ceeeeeecccchhHHHHHHHHHhcCCCcCeEEEEec
Q 035717 83 HIKWA-KIVYIEDTAEGLESALAARVGLFSGRNLGKQVAAVA 123 (125)
Q Consensus 83 l~~~g-~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~~ 123 (125)
+++++ ++.+.+...++++++.+|++.+.+++ .||++++++
T Consensus 301 ~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~-~gk~vv~~~ 341 (341)
T PRK05396 301 LLQSGLDLSPIITHRFPIDDFQKGFEAMRSGQ-SGKVILDWD 341 (341)
T ss_pred HHHcCCChhHheEEEEeHHHHHHHHHHHhcCC-CceEEEecC
Confidence 89888 45444555689999999999998876 799998753
No 79
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=99.26 E-value=3e-10 Score=76.77 Aligned_cols=114 Identities=17% Similarity=0.042 Sum_probs=78.8
Q ss_pred ceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccce-eeeeeecc---cccchHHHHHH
Q 035717 4 EGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVR-MEGFLVSD---YNHLYPKFLEM 79 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~ 79 (125)
+|+|+++||+|+.....++++++++|+++.+|..+.. ....+...+..++.. ........ ......+.+.+
T Consensus 208 ~~~d~vl~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (327)
T PRK10754 208 KKVRVVYDSVGKDTWEASLDCLQRRGLMVSFGNASGP-----VTGVNLGILNQKGSLYVTRPSLQGYITTREELTEASNE 282 (327)
T ss_pred CCeEEEEECCcHHHHHHHHHHhccCCEEEEEccCCCC-----CCCcCHHHHhccCceEEecceeecccCCHHHHHHHHHH
Confidence 5799999999998888999999999999999875421 111122222222211 11111111 11223456778
Q ss_pred HHHHHHcCceeeee--ecccchhHHHHHHHHHhcCCCcCeEEEEe
Q 035717 80 IIPHIKWAKIVYIE--DTAEGLESALAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 80 ~~~l~~~g~i~~~~--~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 122 (125)
+++++++|.+++.. ..+|+++++++|++.++++...||++|.+
T Consensus 283 ~~~~l~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 327 (327)
T PRK10754 283 LFSLIASGVIKVDVAEQQKFPLKDAQRAHEILESRATQGSSLLIP 327 (327)
T ss_pred HHHHHHCCCeeeecccCcEEcHHHHHHHHHHHHcCCCcceEEEeC
Confidence 89999999998653 34599999999999999998899999863
No 80
>PLN02702 L-idonate 5-dehydrogenase
Probab=99.26 E-value=1.6e-10 Score=79.38 Aligned_cols=107 Identities=21% Similarity=0.223 Sum_probs=80.6
Q ss_pred CceeeEEEeCCc-hHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHH
Q 035717 3 PEGIDIYFENVG-GKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMII 81 (125)
Q Consensus 3 ~~g~Dvv~d~~g-~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (125)
++++|++||++| ...+..++++++++|+++.+|.... . ..........+++++.+++... ..+++++
T Consensus 252 ~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-----~-~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~ 319 (364)
T PLN02702 252 GGGIDVSFDCVGFNKTMSTALEATRAGGKVCLVGMGHN-----E-MTVPLTPAAAREVDVVGVFRYR------NTWPLCL 319 (364)
T ss_pred CCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEccCCC-----C-CcccHHHHHhCccEEEEeccCh------HHHHHHH
Confidence 357999999999 4678999999999999999986431 1 1223445667888888876422 2478889
Q ss_pred HHHHcCceee--eeecc--cchhHHHHHHHHHhcCCCcCeEEEE
Q 035717 82 PHIKWAKIVY--IEDTA--EGLESALAARVGLFSGRNLGKQVAA 121 (125)
Q Consensus 82 ~l~~~g~i~~--~~~~~--~~l~~~~~a~~~~~~~~~~gkvvi~ 121 (125)
++++++++.+ .+..+ ++++++++|++.+.+++..+|+++.
T Consensus 320 ~~~~~~~l~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~~kvv~~ 363 (364)
T PLN02702 320 EFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGNAIKVMFN 363 (364)
T ss_pred HHHHcCCCCchHheEEEeccChHHHHHHHHHHhcCCCceEEEEe
Confidence 9999999853 23444 4558999999999988888999985
No 81
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=99.24 E-value=1.7e-10 Score=78.49 Aligned_cols=107 Identities=20% Similarity=0.132 Sum_probs=80.9
Q ss_pred ceeeEEEeCCch-HHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHH
Q 035717 4 EGIDIYFENVGG-KMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIP 82 (125)
Q Consensus 4 ~g~Dvv~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (125)
+|+|++||++|+ .....++++++++|+++.+|..... .........+.+++++.+... ...+.++++++
T Consensus 234 ~~~dvvid~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 303 (344)
T cd08284 234 RGADVVLEAVGGAAALDLAFDLVRPGGVISSVGVHTAE-----EFPFPGLDAYNKNLTLRFGRC-----PVRSLFPELLP 303 (344)
T ss_pred CCCCEEEECCCCHHHHHHHHHhcccCCEEEEECcCCCC-----CccccHHHHhhcCcEEEEecC-----CcchhHHHHHH
Confidence 579999999995 5788999999999999999875421 112233445667777765421 23456889999
Q ss_pred HHHcCceeee--eecccchhHHHHHHHHHhcCCCcCeEEEE
Q 035717 83 HIKWAKIVYI--EDTAEGLESALAARVGLFSGRNLGKQVAA 121 (125)
Q Consensus 83 l~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~gkvvi~ 121 (125)
+++++.+.+. ...+|+++++++|++.+.+++. ||+|++
T Consensus 304 ~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~Vi~ 343 (344)
T cd08284 304 LLESGRLDLEFLIDHRMPLEEAPEAYRLFDKRKV-LKVVLD 343 (344)
T ss_pred HHHcCCCChHHhEeeeecHHHHHHHHHHHhcCCc-eEEEec
Confidence 9999998863 3445899999999999998777 999985
No 82
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=99.24 E-value=1.8e-10 Score=79.21 Aligned_cols=112 Identities=17% Similarity=0.220 Sum_probs=82.4
Q ss_pred CceeeEEEeCCch-HHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHH
Q 035717 3 PEGIDIYFENVGG-KMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMII 81 (125)
Q Consensus 3 ~~g~Dvv~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (125)
++++|+++|++|. ..+..++++++++|+++.+|..... .....+...+..+++++.+++.... ...+.+++++
T Consensus 252 ~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 325 (365)
T cd08278 252 GGGVDYALDTTGVPAVIEQAVDALAPRGTLALVGAPPPG----AEVTLDVNDLLVSGKTIRGVIEGDS--VPQEFIPRLI 325 (365)
T ss_pred CCCCcEEEECCCCcHHHHHHHHHhccCCEEEEeCcCCCC----CccccCHHHHhhcCceEEEeecCCc--ChHHHHHHHH
Confidence 4589999999985 5789999999999999999874311 1122344455578888888764332 1245678899
Q ss_pred HHHHcCceee-eeecccchhHHHHHHHHHhcCCCcCeEEEE
Q 035717 82 PHIKWAKIVY-IEDTAEGLESALAARVGLFSGRNLGKQVAA 121 (125)
Q Consensus 82 ~l~~~g~i~~-~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~ 121 (125)
+++++|++.+ .....|+++++++|++.+++++.. |++|+
T Consensus 326 ~~l~~g~l~~~~~~~~~~l~~~~~a~~~~~~~~~~-k~~~~ 365 (365)
T cd08278 326 ELYRQGKFPFDKLVTFYPFEDINQAIADSESGKVI-KPVLR 365 (365)
T ss_pred HHHHcCCCChHHheEEecHHHHHHHHHHHHCCCce-EEEEC
Confidence 9999999865 233459999999999999887643 77763
No 83
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=99.24 E-value=2.3e-10 Score=77.92 Aligned_cols=109 Identities=19% Similarity=0.225 Sum_probs=79.6
Q ss_pred ceeeEEEeCCch-HHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHH
Q 035717 4 EGIDIYFENVGG-KMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIP 82 (125)
Q Consensus 4 ~g~Dvv~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (125)
+++|+++|++|+ ..+...+++++++|+++.+|.... ..... ....++.+++++.+++.. ...+.+.++++
T Consensus 229 ~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~g~~~~----~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 299 (340)
T TIGR00692 229 EGVDVFLEMSGAPKALEQGLQAVTPGGRVSLLGLPPG----KVTID-FTNKVIFKGLTIYGITGR----HMFETWYTVSR 299 (340)
T ss_pred CCCCEEEECCCCHHHHHHHHHhhcCCCEEEEEccCCC----Ccccc-hhhhhhhcceEEEEEecC----CchhhHHHHHH
Confidence 579999999885 568889999999999999987431 11111 122455667777765421 22345788999
Q ss_pred HHHcCceee--eeecccchhHHHHHHHHHhcCCCcCeEEEEe
Q 035717 83 HIKWAKIVY--IEDTAEGLESALAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 83 l~~~g~i~~--~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 122 (125)
++++|++++ .+...++++++.++++.+.+++ .||+++++
T Consensus 300 ~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~-~gkvvv~~ 340 (340)
T TIGR00692 300 LIQSGKLDLDPIITHKFKFDKFEKGFELMRSGQ-TGKVILSL 340 (340)
T ss_pred HHHcCCCChHHheeeeeeHHHHHHHHHHHhcCC-CceEEEeC
Confidence 999999973 3445599999999999999876 49999864
No 84
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.23 E-value=1.7e-10 Score=76.62 Aligned_cols=112 Identities=17% Similarity=0.169 Sum_probs=84.2
Q ss_pred CCceeeEEEeCCch-HHHHHHHHhhccC-CEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHH
Q 035717 2 FPEGIDIYFENVGG-KMLDAVLINMKIG-GQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEM 79 (125)
Q Consensus 2 ~~~g~Dvv~d~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (125)
+-.|+|+.|||+|. +.+.+++.++..+ |+-|.+|.... ........+. +.++.++.|..++.+.. .+.+-.
T Consensus 259 TdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~~----~~~i~~~p~~-l~~GR~~~Gs~FGG~K~--~~~iP~ 331 (375)
T KOG0022|consen 259 TDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAAA----GQEISTRPFQ-LVTGRTWKGSAFGGFKS--KSDIPK 331 (375)
T ss_pred hcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecCC----Ccccccchhh-hccccEEEEEecccccc--hhhhhH
Confidence 45799999999997 4688999999887 99999998542 1122233333 44578888887776532 234677
Q ss_pred HHHHHHcCceeeeeecc--cchhHHHHHHHHHhcCCCcCeEEEE
Q 035717 80 IIPHIKWAKIVYIEDTA--EGLESALAARVGLFSGRNLGKQVAA 121 (125)
Q Consensus 80 ~~~l~~~g~i~~~~~~~--~~l~~~~~a~~~~~~~~~~gkvvi~ 121 (125)
+++.+.++++.....++ ++++++++||+.|++++.. |-|+.
T Consensus 332 lV~~y~~~~l~ld~~ITh~l~f~~In~AF~ll~~Gksi-R~vl~ 374 (375)
T KOG0022|consen 332 LVKDYMKKKLNLDEFITHELPFEEINKAFDLLHEGKSI-RCVLW 374 (375)
T ss_pred HHHHHHhCccchhhhhhcccCHHHHHHHHHHHhCCceE-EEEEe
Confidence 78888999999876665 8999999999999998866 66664
No 85
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=99.23 E-value=1.5e-10 Score=79.07 Aligned_cols=105 Identities=18% Similarity=0.123 Sum_probs=78.6
Q ss_pred ceeeEEEeCCch-HHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHH-HhccceeeeeeecccccchHHHHHHHH
Q 035717 4 EGIDIYFENVGG-KMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRL-ILKQVRMEGFLVSDYNHLYPKFLEMII 81 (125)
Q Consensus 4 ~g~Dvv~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (125)
+++|++||++|+ ..+..++++++++|+++.+|.... . ....+..+ ..+++++.+++... ..+++++
T Consensus 242 ~~vdvvld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-----~-~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~ 309 (350)
T cd08256 242 YGCDIYIEATGHPSAVEQGLNMIRKLGRFVEFSVFGD-----P-VTVDWSIIGDRKELDVLGSHLGP------YCYPIAI 309 (350)
T ss_pred CCCCEEEECCCChHHHHHHHHHhhcCCEEEEEccCCC-----C-CccChhHhhcccccEEEEeccCc------hhHHHHH
Confidence 479999999995 568889999999999999986431 1 11222222 24567777765432 2478889
Q ss_pred HHHHcCceeee--eecccchhHHHHHHHHHhcCCCcCeEEE
Q 035717 82 PHIKWAKIVYI--EDTAEGLESALAARVGLFSGRNLGKQVA 120 (125)
Q Consensus 82 ~l~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~gkvvi 120 (125)
+++++|.+++. +..+|+++++++|++.+++++..+|+++
T Consensus 310 ~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~kvv~ 350 (350)
T cd08256 310 DLIASGRLPTDGIVTHQFPLEDFEEAFELMARGDDSIKVVL 350 (350)
T ss_pred HHHHcCCCChhHheEEEeEHHHHHHHHHHHHhCCCceEEeC
Confidence 99999999874 4455999999999999999888888874
No 86
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=99.22 E-value=2.1e-10 Score=78.09 Aligned_cols=109 Identities=20% Similarity=0.132 Sum_probs=79.5
Q ss_pred ceeeEEEeCCch-HHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHH
Q 035717 4 EGIDIYFENVGG-KMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIP 82 (125)
Q Consensus 4 ~g~Dvv~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (125)
+++|++||++|+ ..+..++++++++|+++.+|..... .. .......+.+++++.+..... .+.++++++
T Consensus 235 ~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 304 (347)
T cd05278 235 RGVDCVIEAVGFEETFEQAVKVVRPGGTIANVGVYGKP----DP-LPLLGEWFGKNLTFKTGLVPV-----RARMPELLD 304 (347)
T ss_pred CCCcEEEEccCCHHHHHHHHHHhhcCCEEEEEcCCCCC----cc-cCccchhhhceeEEEeeccCc-----hhHHHHHHH
Confidence 579999999997 5789999999999999999854321 10 001112235667766653221 456889999
Q ss_pred HHHcCceeee--eecccchhHHHHHHHHHhcCCC-cCeEEEEe
Q 035717 83 HIKWAKIVYI--EDTAEGLESALAARVGLFSGRN-LGKQVAAV 122 (125)
Q Consensus 83 l~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~-~gkvvi~~ 122 (125)
++++|.+.+. ....|+++++++|++++..++. .+|+++++
T Consensus 305 ~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~vv~~ 347 (347)
T cd05278 305 LIEEGKIDPSKLITHRFPLDDILKAYRLFDNKPDGCIKVVIRP 347 (347)
T ss_pred HHHcCCCChhHcEEEEecHHHHHHHHHHHhcCCCCceEEEecC
Confidence 9999999864 3345899999999999988776 68988763
No 87
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=99.22 E-value=2.2e-10 Score=77.35 Aligned_cols=107 Identities=27% Similarity=0.347 Sum_probs=81.1
Q ss_pred eeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHHHH
Q 035717 5 GIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIPHI 84 (125)
Q Consensus 5 g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 84 (125)
++|++++++|......++++++++|+++.+|..... . ..........++.++.+... ...+.++++++++
T Consensus 226 ~~d~v~~~~g~~~~~~~~~~~~~~g~~v~~g~~~~~----~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 295 (332)
T cd08259 226 GADVVIELVGSPTIEESLRSLNKGGRLVLIGNVTPD----P-APLRPGLLILKEIRIIGSIS-----ATKADVEEALKLV 295 (332)
T ss_pred CCCEEEECCChHHHHHHHHHhhcCCEEEEEcCCCCC----C-cCCCHHHHHhCCcEEEEecC-----CCHHHHHHHHHHH
Confidence 689999999988889999999999999999864321 0 11122223346666666532 1245588899999
Q ss_pred HcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEE
Q 035717 85 KWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAA 121 (125)
Q Consensus 85 ~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~ 121 (125)
++|.+.+.....|+++++++|++.+.+++..||++++
T Consensus 296 ~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~ 332 (332)
T cd08259 296 KEGKIKPVIDRVVSLEDINEALEDLKSGKVVGRIVLK 332 (332)
T ss_pred HcCCCccceeEEEcHHHHHHHHHHHHcCCcccEEEeC
Confidence 9999987666669999999999999998888998863
No 88
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=99.22 E-value=3.7e-10 Score=75.53 Aligned_cols=112 Identities=24% Similarity=0.352 Sum_probs=84.7
Q ss_pred ceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeeccc-----ccchHHHHH
Q 035717 4 EGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDY-----NHLYPKFLE 78 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 78 (125)
+++|+++|++|+.....++++++++|+++.+|..+..+ ...+...++.+++++.++..... .......+.
T Consensus 207 ~~~d~vi~~~g~~~~~~~~~~~~~~g~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (323)
T cd05276 207 RGVDVILDMVGGDYLARNLRALAPDGRLVLIGLLGGAK-----AELDLAPLLRKRLTLTGSTLRSRSLEEKAALAAAFRE 281 (323)
T ss_pred CCeEEEEECCchHHHHHHHHhhccCCEEEEEecCCCCC-----CCCchHHHHHhCCeEEEeeccchhhhccHHHHHHHHH
Confidence 57999999999888889999999999999998644211 12233444568888888765432 111345677
Q ss_pred HHHHHHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEE
Q 035717 79 MIIPHIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVA 120 (125)
Q Consensus 79 ~~~~l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi 120 (125)
++.+++.++.+.+.....|+++++++|++.+.+++..||+++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~ 323 (323)
T cd05276 282 HVWPLFASGRIRPVIDKVFPLEEAAEAHRRMESNEHIGKIVL 323 (323)
T ss_pred HHHHHHHCCCccCCcceEEcHHHHHHHHHHHHhCCCcceEeC
Confidence 888999999998765556999999999999998887888874
No 89
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.22 E-value=2.9e-10 Score=77.50 Aligned_cols=105 Identities=19% Similarity=0.243 Sum_probs=78.3
Q ss_pred ceeeEEEeCCchH-HHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHH
Q 035717 4 EGIDIYFENVGGK-MLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIP 82 (125)
Q Consensus 4 ~g~Dvv~d~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (125)
+++|++|||+|+. .++.++++++++|+++.+|.... . ...+......+++.+.+++... +.++++++
T Consensus 233 ~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 300 (343)
T cd05285 233 KGPDVVIECTGAESCIQTAIYATRPGGTVVLVGMGKP-----E-VTLPLSAASLREIDIRGVFRYA------NTYPTAIE 300 (343)
T ss_pred CCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCC-----C-CccCHHHHhhCCcEEEEeccCh------HHHHHHHH
Confidence 4699999999976 78899999999999999986331 1 1223334556677777654322 45788899
Q ss_pred HHHcCceee--eeecccchhHHHHHHHHHhcCC-CcCeEEE
Q 035717 83 HIKWAKIVY--IEDTAEGLESALAARVGLFSGR-NLGKQVA 120 (125)
Q Consensus 83 l~~~g~i~~--~~~~~~~l~~~~~a~~~~~~~~-~~gkvvi 120 (125)
+++++.+.+ ....+|+++++.+|++++.+++ ..+|++|
T Consensus 301 ~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~ 341 (343)
T cd05285 301 LLASGKVDVKPLITHRFPLEDAVEAFETAAKGKKGVIKVVI 341 (343)
T ss_pred HHHcCCCCchHhEEEEEeHHHHHHHHHHHHcCCCCeeEEEE
Confidence 999998753 3344599999999999999874 4589987
No 90
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=99.21 E-value=2.4e-10 Score=77.86 Aligned_cols=109 Identities=12% Similarity=0.113 Sum_probs=82.8
Q ss_pred eeeEEEeCCch-HHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHHH
Q 035717 5 GIDIYFENVGG-KMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIPH 83 (125)
Q Consensus 5 g~Dvv~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (125)
++|++||++|+ .....++++++++|+++.+|....... ....+...++.+++++.+..... ...+++++++
T Consensus 233 ~~d~vi~~~g~~~~~~~~~~~l~~~g~~i~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l 304 (345)
T cd08260 233 GAHVSVDALGIPETCRNSVASLRKRGRHVQVGLTLGEEA---GVALPMDRVVARELEIVGSHGMP-----AHRYDAMLAL 304 (345)
T ss_pred CCCEEEEcCCCHHHHHHHHHHhhcCCEEEEeCCcCCCCC---ccccCHHHHhhcccEEEeCCcCC-----HHHHHHHHHH
Confidence 79999999984 678899999999999999987542110 01234444557778888765422 3458889999
Q ss_pred HHcCceeee--eecccchhHHHHHHHHHhcCCCcCeEEEE
Q 035717 84 IKWAKIVYI--EDTAEGLESALAARVGLFSGRNLGKQVAA 121 (125)
Q Consensus 84 ~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~gkvvi~ 121 (125)
+++|.+.+. +...++++++++|++.+++++..||+|++
T Consensus 305 ~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~v~~ 344 (345)
T cd08260 305 IASGKLDPEPLVGRTISLDEAPDALAAMDDYATAGITVIT 344 (345)
T ss_pred HHcCCCChhhheeEEecHHHHHHHHHHHHcCCCCceEEec
Confidence 999998864 34458999999999999999889998864
No 91
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=99.20 E-value=3.5e-10 Score=76.87 Aligned_cols=108 Identities=14% Similarity=0.122 Sum_probs=81.2
Q ss_pred ceeeEEEeCCch-HHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHH
Q 035717 4 EGIDIYFENVGG-KMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIP 82 (125)
Q Consensus 4 ~g~Dvv~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (125)
+++|++||++|+ ..+..++++++++|+++.+|.... + .......+..+++++.+.. ....+.++++++
T Consensus 226 ~~vd~vld~~g~~~~~~~~~~~l~~~G~~i~~g~~~~-----~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 294 (337)
T cd08261 226 EGADVVIDATGNPASMEEAVELVAHGGRVVLVGLSKG-----P-VTFPDPEFHKKELTILGSR-----NATREDFPDVID 294 (337)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEcCCCC-----C-CccCHHHHHhCCCEEEEec-----cCChhhHHHHHH
Confidence 469999999986 578899999999999999986431 1 1223334455667766542 123456888999
Q ss_pred HHHcCceee--eeecccchhHHHHHHHHHhcC-CCcCeEEEEe
Q 035717 83 HIKWAKIVY--IEDTAEGLESALAARVGLFSG-RNLGKQVAAV 122 (125)
Q Consensus 83 l~~~g~i~~--~~~~~~~l~~~~~a~~~~~~~-~~~gkvvi~~ 122 (125)
++++|.+++ .....++++++.+|++.+.++ ...+|+|+++
T Consensus 295 l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~k~v~~~ 337 (337)
T cd08261 295 LLESGKVDPEALITHRFPFEDVPEAFDLWEAPPGGVIKVLIEF 337 (337)
T ss_pred HHHcCCCChhhheEEEeeHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 999999987 555569999999999999987 4778999863
No 92
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.20 E-value=6e-10 Score=74.71 Aligned_cols=111 Identities=15% Similarity=0.025 Sum_probs=82.5
Q ss_pred ceeeEEEeCCch-HHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHH
Q 035717 4 EGIDIYFENVGG-KMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIP 82 (125)
Q Consensus 4 ~g~Dvv~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (125)
.|+|+++||+|+ .....++++++++|+++.+|.... . ....+......++.++.++..... ....+.++++++
T Consensus 197 ~~vd~vld~~g~~~~~~~~~~~l~~~g~~~~~g~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 270 (312)
T cd08269 197 AGADVVIEAVGHQWPLDLAGELVAERGRLVIFGYHQD----G-PRPVPFQTWNWKGIDLINAVERDP-RIGLEGMREAVK 270 (312)
T ss_pred CCCCEEEECCCCHHHHHHHHHHhccCCEEEEEccCCC----C-CcccCHHHHhhcCCEEEEecccCc-cchhhHHHHHHH
Confidence 579999999985 468899999999999999986431 1 112233445667777777643322 234567899999
Q ss_pred HHHcCceeee--eecccchhHHHHHHHHHhcCCC-cCeEEE
Q 035717 83 HIKWAKIVYI--EDTAEGLESALAARVGLFSGRN-LGKQVA 120 (125)
Q Consensus 83 l~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~-~gkvvi 120 (125)
++++|.+.+. ...+|+++++++|++.+.+++. .+|+++
T Consensus 271 ~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 311 (312)
T cd08269 271 LIADGRLDLGSLLTHEFPLEELGDAFEAARRRPDGFIKGVI 311 (312)
T ss_pred HHHcCCCCchhheeeeecHHHHHHHHHHHHhCCCCceEEEe
Confidence 9999999863 3455999999999999998854 588876
No 93
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=99.19 E-value=3.1e-10 Score=77.27 Aligned_cols=108 Identities=12% Similarity=0.026 Sum_probs=78.4
Q ss_pred CceeeEEEeCCch-HHHHHHHHhhcc--CCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeec-------ccccc
Q 035717 3 PEGIDIYFENVGG-KMLDAVLINMKI--GGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVS-------DYNHL 72 (125)
Q Consensus 3 ~~g~Dvv~d~~g~-~~~~~~~~~l~~--~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 72 (125)
++++|+++|++|+ ..+..+++++++ +|+++.+|...... ....+.....+... ..+..
T Consensus 219 ~~~~d~vl~~~g~~~~~~~~~~~l~~~~~g~~v~~g~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (339)
T cd08249 219 GGKLRYALDCISTPESAQLCAEALGRSGGGKLVSLLPVPEET------------EPRKGVKVKFVLGYTVFGEIPEDREF 286 (339)
T ss_pred CCCeeEEEEeeccchHHHHHHHHHhccCCCEEEEecCCCccc------------cCCCCceEEEEEeeeecccccccccc
Confidence 4679999999998 788999999999 99999998643210 01112222222211 12223
Q ss_pred hHHHHHHHHHHHHcCceeeeeecccc--hhHHHHHHHHHhcCC-CcCeEEEEe
Q 035717 73 YPKFLEMIIPHIKWAKIVYIEDTAEG--LESALAARVGLFSGR-NLGKQVAAV 122 (125)
Q Consensus 73 ~~~~~~~~~~l~~~g~i~~~~~~~~~--l~~~~~a~~~~~~~~-~~gkvvi~~ 122 (125)
....++++.++++++++.+.....++ ++++++|++.+.+++ ..||+|+++
T Consensus 287 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~kvvv~~ 339 (339)
T cd08249 287 GEVFWKYLPELLEEGKLKPHPVRVVEGGLEGVQEGLDLLRKGKVSGEKLVVRL 339 (339)
T ss_pred hHHHHHHHHHHHHcCCccCCCceecCCcHHHHHHHHHHHHCCCccceEEEEeC
Confidence 34568889999999999986545577 999999999999988 889999874
No 94
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=99.19 E-value=8.4e-10 Score=73.90 Aligned_cols=113 Identities=26% Similarity=0.333 Sum_probs=84.7
Q ss_pred ceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeeccccc----chHHHHHH
Q 035717 4 EGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNH----LYPKFLEM 79 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 79 (125)
+++|+++|++|+.....++++++++|+++.+|.... ............+++++.++....+.. ...+.+++
T Consensus 207 ~~~d~v~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (323)
T cd08241 207 RGVDVVYDPVGGDVFEASLRSLAWGGRLLVIGFASG-----EIPQIPANLLLLKNISVVGVYWGAYARREPELLRANLAE 281 (323)
T ss_pred CCcEEEEECccHHHHHHHHHhhccCCEEEEEccCCC-----CcCcCCHHHHhhcCcEEEEEecccccchhHHHHHHHHHH
Confidence 479999999998888899999999999999986431 111112223456788888876543321 23467888
Q ss_pred HHHHHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEE
Q 035717 80 IIPHIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAA 121 (125)
Q Consensus 80 ~~~l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~ 121 (125)
+++++.++.+.+.....|+++++.++++.+.++...||++++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~ 323 (323)
T cd08241 282 LFDLLAEGKIRPHVSAVFPLEQAAEALRALADRKATGKVVLT 323 (323)
T ss_pred HHHHHHCCCcccccceEEcHHHHHHHHHHHHhCCCCCcEEeC
Confidence 999999999876655569999999999999988888898864
No 95
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=99.19 E-value=9.7e-10 Score=73.72 Aligned_cols=114 Identities=23% Similarity=0.347 Sum_probs=86.4
Q ss_pred ceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccc-----cchHHHHH
Q 035717 4 EGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYN-----HLYPKFLE 78 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 78 (125)
+++|+++|++|+.....++++++++|+++.+|.....+ . ..+...++.+++++.++...... ....+.+.
T Consensus 207 ~~~d~~i~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (325)
T TIGR02824 207 KGVDVILDIVGGSYLNRNIKALALDGRIVQIGFQGGRK----A-ELDLGPLLAKRLTITGSTLRARPVAEKAAIAAELRE 281 (325)
T ss_pred CCeEEEEECCchHHHHHHHHhhccCcEEEEEecCCCCc----C-CCChHHHHhcCCEEEEEehhhcchhhhHHHHHHHHH
Confidence 47999999999888889999999999999998643211 1 22344445789999987654321 11345667
Q ss_pred HHHHHHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEEe
Q 035717 79 MIIPHIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 79 ~~~~l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 122 (125)
+++++++++.+.+.....|++++++++++.+.++...||+++++
T Consensus 282 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 325 (325)
T TIGR02824 282 HVWPLLASGRVRPVIDKVFPLEDAAQAHALMESGDHIGKIVLTV 325 (325)
T ss_pred HHHHHHHCCcccCccccEEeHHHHHHHHHHHHhCCCcceEEEeC
Confidence 78899999998866555599999999999999888889998863
No 96
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=99.19 E-value=7e-11 Score=70.02 Aligned_cols=72 Identities=22% Similarity=0.405 Sum_probs=57.6
Q ss_pred ceeeEEEeCCc-hHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHH
Q 035717 4 EGIDIYFENVG-GKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIP 82 (125)
Q Consensus 4 ~g~Dvv~d~~g-~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (125)
+|+|+||||+| +..++.++++++++|+++.+|.... .....+...++.+++++.|++.+.. +.++++++
T Consensus 57 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~vg~~~~-----~~~~~~~~~~~~~~~~i~g~~~~~~-----~~~~~~~~ 126 (130)
T PF00107_consen 57 RGVDVVIDCVGSGDTLQEAIKLLRPGGRIVVVGVYGG-----DPISFNLMNLMFKEITIRGSWGGSP-----EDFQEALQ 126 (130)
T ss_dssp SSEEEEEESSSSHHHHHHHHHHEEEEEEEEEESSTST-----SEEEEEHHHHHHTTEEEEEESSGGH-----HHHHHHHH
T ss_pred ccceEEEEecCcHHHHHHHHHHhccCCEEEEEEccCC-----CCCCCCHHHHHhCCcEEEEEccCCH-----HHHHHHHH
Confidence 48999999999 7789999999999999999998651 2335577888999999999987652 23666666
Q ss_pred HHH
Q 035717 83 HIK 85 (125)
Q Consensus 83 l~~ 85 (125)
++.
T Consensus 127 ~la 129 (130)
T PF00107_consen 127 LLA 129 (130)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
No 97
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=99.18 E-value=7.3e-10 Score=75.08 Aligned_cols=110 Identities=18% Similarity=0.084 Sum_probs=82.4
Q ss_pred ceeeEEEeCCch-HHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeeccc---cc----chHH
Q 035717 4 EGIDIYFENVGG-KMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDY---NH----LYPK 75 (125)
Q Consensus 4 ~g~Dvv~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~ 75 (125)
+++|+++|++|+ ..+..++++++++|+++.+|... ...+...+..+++++.+.++... .. ...+
T Consensus 216 ~~~d~vl~~~~~~~~~~~~~~~l~~~g~~v~~g~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (336)
T cd08252 216 EPVDYIFCLTDTDQHWDAMAELIAPQGHICLIVDPQ--------EPLDLGPLKSKSASFHWEFMFTRSMFQTPDMIEQHE 287 (336)
T ss_pred CCCCEEEEccCcHHHHHHHHHHhcCCCEEEEecCCC--------CcccchhhhcccceEEEEEeeccccccccchhhHHH
Confidence 579999999995 67899999999999999998532 11222333467788877654321 11 2346
Q ss_pred HHHHHHHHHHcCceeeeee---cccchhHHHHHHHHHhcCCCcCeEEEE
Q 035717 76 FLEMIIPHIKWAKIVYIED---TAEGLESALAARVGLFSGRNLGKQVAA 121 (125)
Q Consensus 76 ~~~~~~~l~~~g~i~~~~~---~~~~l~~~~~a~~~~~~~~~~gkvvi~ 121 (125)
.++++++++.+|.+.+... ..++++++++|++.+.++...||++++
T Consensus 288 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~vv~~ 336 (336)
T cd08252 288 ILNEVADLLDAGKLKTTLTETLGPINAENLREAHALLESGKTIGKIVLE 336 (336)
T ss_pred HHHHHHHHHHCCCEecceeeeecCCCHHHHHHHHHHHHcCCccceEEeC
Confidence 7889999999999997532 237999999999999998888998863
No 98
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.18 E-value=5.1e-10 Score=76.25 Aligned_cols=109 Identities=20% Similarity=0.196 Sum_probs=78.6
Q ss_pred ceeeEEEeCCch-HHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHH
Q 035717 4 EGIDIYFENVGG-KMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIP 82 (125)
Q Consensus 4 ~g~Dvv~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (125)
+++|++||++|+ .....++++|+++|+++.+|.... ..... .......++.++.++.... ..+.+.++++
T Consensus 230 ~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 300 (341)
T cd05281 230 TGVDVVLEMSGNPKAIEQGLKALTPGGRVSILGLPPG----PVDID-LNNLVIFKGLTVQGITGRK----MFETWYQVSA 300 (341)
T ss_pred CCCCEEEECCCCHHHHHHHHHHhccCCEEEEEccCCC----Ccccc-cchhhhccceEEEEEecCC----cchhHHHHHH
Confidence 589999999986 467899999999999999986432 01011 1112455667776654211 2234778899
Q ss_pred HHHcCceee--eeecccchhHHHHHHHHHhcCCCcCeEEEEe
Q 035717 83 HIKWAKIVY--IEDTAEGLESALAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 83 l~~~g~i~~--~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 122 (125)
++++|.+.+ .+...++++++++|++.+.+++ .||+++++
T Consensus 301 ~l~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~-~gk~vv~~ 341 (341)
T cd05281 301 LLKSGKVDLSPVITHKLPLEDFEEAFELMRSGK-CGKVVLYP 341 (341)
T ss_pred HHHcCCCChhHheEEEecHHHHHHHHHHHhcCC-CceEEecC
Confidence 999999864 3334589999999999999988 89999864
No 99
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=99.17 E-value=3.8e-10 Score=77.94 Aligned_cols=114 Identities=18% Similarity=0.109 Sum_probs=80.2
Q ss_pred CceeeEEEeCCchH------------HHHHHHHhhccCCEEEEEccccccCCCC-------CCCcccHHHHHhccceeee
Q 035717 3 PEGIDIYFENVGGK------------MLDAVLINMKIGGQIAVCGMISQYNLDE-------PKGIHNLTRLILKQVRMEG 63 (125)
Q Consensus 3 ~~g~Dvv~d~~g~~------------~~~~~~~~l~~~G~~v~~g~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 63 (125)
++++|+++||+|+. .+..++++++++|+++.+|......... ....++...+..++.++.+
T Consensus 241 ~~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (375)
T cd08282 241 PGGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVGVYVAEDPGAGDAAAKQGELSFDFGLLWAKGLSFGT 320 (375)
T ss_pred CCCCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEeccCCcccccccccccCccccccHHHHHhcCcEEEE
Confidence 35799999999875 3789999999999999888643211000 0011233444555555554
Q ss_pred eeecccccchHHHHHHHHHHHHcCceeee--eecccchhHHHHHHHHHhcCCCcCeEEEEe
Q 035717 64 FLVSDYNHLYPKFLEMIIPHIKWAKIVYI--EDTAEGLESALAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~l~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 122 (125)
... ...+.+.+++++++++++++. +..+|+++++++|++.+.+++ .+|+|+++
T Consensus 321 ~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~-~~kvvv~~ 375 (375)
T cd08282 321 GQA-----PVKKYNRQLRDLILAGRAKPSFVVSHVISLEDAPEAYARFDKRL-ETKVVIKP 375 (375)
T ss_pred ecC-----CchhhHHHHHHHHHcCCCChHHcEEEEeeHHHHHHHHHHHhcCC-ceEEEeCC
Confidence 321 123458888999999999874 455699999999999999888 89999853
No 100
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.17 E-value=1.3e-09 Score=73.23 Aligned_cols=114 Identities=21% Similarity=0.368 Sum_probs=85.5
Q ss_pred ceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeeccc---ccchHHHHHHH
Q 035717 4 EGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDY---NHLYPKFLEMI 80 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 80 (125)
+++|++++++|+.....++++++++|+++.+|.... + + ...+....+.+++++.++.+... +......++.+
T Consensus 212 ~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~g~~~~-~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (328)
T cd08268 212 KGVDVVFDPVGGPQFAKLADALAPGGTLVVYGALSG-E---P-TPFPLKAALKKSLTFRGYSLDEITLDPEARRRAIAFI 286 (328)
T ss_pred CCceEEEECCchHhHHHHHHhhccCCEEEEEEeCCC-C---C-CCCchHHHhhcCCEEEEEecccccCCHHHHHHHHHHH
Confidence 479999999999888899999999999999986432 1 1 12233334677888877654321 23345667777
Q ss_pred HHHHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEEe
Q 035717 81 IPHIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 81 ~~l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 122 (125)
.+++.++.+.+.....|+++++.++++.+..+...||++++.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~ 328 (328)
T cd08268 287 LDGLASGALKPVVDRVFPFDDIVEAHRYLESGQQIGKIVVTP 328 (328)
T ss_pred HHHHHCCCCcCCcccEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence 888888988876555699999999999999888889998763
No 101
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.16 E-value=1.3e-09 Score=73.28 Aligned_cols=110 Identities=25% Similarity=0.277 Sum_probs=83.4
Q ss_pred ceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecc------cccchHHHH
Q 035717 4 EGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSD------YNHLYPKFL 77 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 77 (125)
+++|+++|++|+.....++++++++|+++.+|.... . .......+++++.++.... .+....+.+
T Consensus 210 ~~~d~v~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (326)
T cd08272 210 RGFDVVFDTVGGETLDASFEAVALYGRVVSILGGAT----H-----DLAPLSFRNATYSGVFTLLPLLTGEGRAHHGEIL 280 (326)
T ss_pred CCCcEEEECCChHHHHHHHHHhccCCEEEEEecCCc----c-----chhhHhhhcceEEEEEcccccccccchhhHHHHH
Confidence 479999999998888889999999999999986420 1 1112235677777765432 112245678
Q ss_pred HHHHHHHHcCceeeeee-cccchhHHHHHHHHHhcCCCcCeEEEEe
Q 035717 78 EMIIPHIKWAKIVYIED-TAEGLESALAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 78 ~~~~~l~~~g~i~~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 122 (125)
.++++++.++.+.+.+. ..|++++++++++.+.+++..||+++++
T Consensus 281 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~ 326 (326)
T cd08272 281 REAARLVERGQLRPLLDPRTFPLEEAAAAHARLESGSARGKIVIDV 326 (326)
T ss_pred HHHHHHHHCCCcccccccceecHHHHHHHHHHHHcCCcccEEEEEC
Confidence 88999999999887644 6699999999999999888789999864
No 102
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=99.16 E-value=9.8e-10 Score=75.54 Aligned_cols=110 Identities=19% Similarity=0.221 Sum_probs=80.6
Q ss_pred ceeeEEEeCCc-hHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHH
Q 035717 4 EGIDIYFENVG-GKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIP 82 (125)
Q Consensus 4 ~g~Dvv~d~~g-~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (125)
+++|+++|++| ...+..++++++++|+++.+|.... ......+...+..++.++.++++... ...+.++++++
T Consensus 250 ~~vd~vld~~~~~~~~~~~~~~l~~~G~~v~~g~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 323 (363)
T cd08279 250 RGADYAFEAVGRAATIRQALAMTRKGGTAVVVGMGPP----GETVSLPALELFLSEKRLQGSLYGSA--NPRRDIPRLLD 323 (363)
T ss_pred CCCCEEEEcCCChHHHHHHHHHhhcCCeEEEEecCCC----CcccccCHHHHhhcCcEEEEEEecCc--CcHHHHHHHHH
Confidence 57999999999 4578899999999999999986431 01112344445556777777765322 23456889999
Q ss_pred HHHcCceeee--eecccchhHHHHHHHHHhcCCCcCeEE
Q 035717 83 HIKWAKIVYI--EDTAEGLESALAARVGLFSGRNLGKQV 119 (125)
Q Consensus 83 l~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~gkvv 119 (125)
+++++.+.+. +..+|+++++.+|++.+.+++..+.++
T Consensus 324 l~~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 362 (363)
T cd08279 324 LYRAGRLKLDELVTRRYSLDEINEAFADMLAGENARGVI 362 (363)
T ss_pred HHHcCCCCcceeEEEEEcHHHHHHHHHHHhcCCceeEEe
Confidence 9999999863 344599999999999999877654443
No 103
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=99.16 E-value=1.4e-09 Score=72.84 Aligned_cols=113 Identities=24% Similarity=0.246 Sum_probs=85.3
Q ss_pred ceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeeccc-ccchHHHHHHHHH
Q 035717 4 EGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDY-NHLYPKFLEMIIP 82 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (125)
+++|+++|++|+......+++++++|+++.+|.... . .......++.++.++.+...+.. +....+.++++.+
T Consensus 212 ~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (325)
T cd08253 212 QGVDVIIEVLANVNLAKDLDVLAPGGRIVVYGSGGL----R--GTIPINPLMAKEASIRGVLLYTATPEERAAAAEAIAA 285 (325)
T ss_pred CceEEEEECCchHHHHHHHHhhCCCCEEEEEeecCC----c--CCCChhHHHhcCceEEeeehhhcCHHHHHHHHHHHHH
Confidence 489999999998888889999999999999986431 1 11223334566777777654322 2234566788888
Q ss_pred HHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEEe
Q 035717 83 HIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 83 l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 122 (125)
++.++.+.+.....|++++++++++.+.++...||+++++
T Consensus 286 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~kvv~~~ 325 (325)
T cd08253 286 GLADGALRPVIAREYPLEEAAAAHEAVESGGAIGKVVLDP 325 (325)
T ss_pred HHHCCCccCccccEEcHHHHHHHHHHHHcCCCcceEEEeC
Confidence 9999998876555699999999999999988889999864
No 104
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=99.16 E-value=7.6e-10 Score=75.16 Aligned_cols=107 Identities=19% Similarity=0.215 Sum_probs=80.1
Q ss_pred eee-EEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHHH
Q 035717 5 GID-IYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIPH 83 (125)
Q Consensus 5 g~D-vv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (125)
++| +++++.++..+..++++++++|+++.+|.... ....+...+..++.++.+++.+. .+.+++++++
T Consensus 230 ~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l 298 (338)
T PRK09422 230 GAHAAVVTAVAKAAFNQAVDAVRAGGRVVAVGLPPE------SMDLSIPRLVLDGIEVVGSLVGT-----RQDLEEAFQF 298 (338)
T ss_pred CCcEEEEeCCCHHHHHHHHHhccCCCEEEEEeeCCC------CceecHHHHhhcCcEEEEecCCC-----HHHHHHHHHH
Confidence 578 55666667789999999999999999986431 11224444556677776654322 2458889999
Q ss_pred HHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEEec
Q 035717 84 IKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAAVA 123 (125)
Q Consensus 84 ~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~~ 123 (125)
+++|.+.+.+. .++++++++|++.+.++...||++++..
T Consensus 299 ~~~g~l~~~v~-~~~~~~~~~a~~~~~~~~~~gkvvv~~~ 337 (338)
T PRK09422 299 GAEGKVVPKVQ-LRPLEDINDIFDEMEQGKIQGRMVIDFT 337 (338)
T ss_pred HHhCCCCccEE-EEcHHHHHHHHHHHHcCCccceEEEecC
Confidence 99999876544 4899999999999999988999998753
No 105
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.15 E-value=8e-10 Score=74.70 Aligned_cols=116 Identities=21% Similarity=0.217 Sum_probs=79.4
Q ss_pred CceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccH----------HHH--Hhccceeeeeeecc--
Q 035717 3 PEGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNL----------TRL--ILKQVRMEGFLVSD-- 68 (125)
Q Consensus 3 ~~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~----------~~~--~~~~~~~~~~~~~~-- 68 (125)
++++|+++|++|+.....++++++++|+++.+|.....+... ..+.. ... ..++.+..+.+...
T Consensus 201 ~~~~d~vl~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (331)
T cd08273 201 PGGVDVVFDGVGGESYEESYAALAPGGTLVCYGGNSSLLQGR--RSLAALGSLLARLAKLKLLPTGRRATFYYVWRDRAE 278 (331)
T ss_pred CCCceEEEECCchHHHHHHHHHhcCCCEEEEEccCCCCCCcc--ccccchhhhhhhhhhhcceeccceeEEEeechhccc
Confidence 457999999999888899999999999999998754321100 00000 001 11222332322211
Q ss_pred cccchHHHHHHHHHHHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEE
Q 035717 69 YNHLYPKFLEMIIPHIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVA 120 (125)
Q Consensus 69 ~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi 120 (125)
.+....+.++++++++++|.+.+....+++++++++|++.+.+++..||+|+
T Consensus 279 ~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvv~ 330 (331)
T cd08273 279 DPKLFRQDLTELLDLLAKGKIRPKIAKRLPLSEVAEAHRLLESGKVVGKIVL 330 (331)
T ss_pred CHHHHHHHHHHHHHHHHCCCccCCcceEEcHHHHHHHHHHHHcCCCcceEEe
Confidence 1122456788999999999998765556999999999999998888899886
No 106
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=99.14 E-value=6.8e-10 Score=75.02 Aligned_cols=103 Identities=23% Similarity=0.200 Sum_probs=75.9
Q ss_pred ceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHHH
Q 035717 4 EGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIPH 83 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (125)
+++|+|+|++|+..+..++++++++|+++.+|.... . ....+...+..++.++.+...+. ++.+.+++++
T Consensus 222 ~~~d~vl~~~g~~~~~~~~~~l~~~g~~v~~g~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l 291 (325)
T cd08264 222 KMADVVINSLGSSFWDLSLSVLGRGGRLVTFGTLTG----G-EVKLDLSDLYSKQISIIGSTGGT-----RKELLELVKI 291 (325)
T ss_pred CCCCEEEECCCHHHHHHHHHhhccCCEEEEEecCCC----C-CCccCHHHHhhcCcEEEEccCCC-----HHHHHHHHHH
Confidence 579999999998889999999999999999986421 1 12334455566677777764332 2347778888
Q ss_pred HHcCceeeeeecccchhHHHHHHHHHhcCCCcCeE
Q 035717 84 IKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQ 118 (125)
Q Consensus 84 ~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkv 118 (125)
+...+ ..+..+|+++++++|++.+.+++..||+
T Consensus 292 ~~~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~kv 324 (325)
T cd08264 292 AKDLK--VKVWKTFKLEEAKEALKELFSKERDGRI 324 (325)
T ss_pred HHcCC--ceeEEEEcHHHHHHHHHHHHcCCCcccc
Confidence 86544 3344569999999999999988777775
No 107
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.12 E-value=2e-09 Score=72.91 Aligned_cols=107 Identities=22% Similarity=0.244 Sum_probs=79.2
Q ss_pred CceeeEEEeCCch-HHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHH
Q 035717 3 PEGIDIYFENVGG-KMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMII 81 (125)
Q Consensus 3 ~~g~Dvv~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (125)
.+++|++||++|. ..+..++++++++|+++.+|..... .....+...+..+++++.+.+. ..+.+++++
T Consensus 224 ~~~vd~v~~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 293 (334)
T cd08234 224 PYGFDVVIEATGVPKTLEQAIEYARRGGTVLVFGVYAPD----ARVSISPFEIFQKELTIIGSFI------NPYTFPRAI 293 (334)
T ss_pred CCCCcEEEECCCChHHHHHHHHHHhcCCEEEEEecCCCC----CCcccCHHHHHhCCcEEEEecc------CHHHHHHHH
Confidence 3579999999974 5788999999999999999864320 1112233334456777777642 234588899
Q ss_pred HHHHcCceeee--eecccchhHHHHHHHHHhcCCCcCeEEE
Q 035717 82 PHIKWAKIVYI--EDTAEGLESALAARVGLFSGRNLGKQVA 120 (125)
Q Consensus 82 ~l~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~gkvvi 120 (125)
++++++++.+. ....|+++++++|++++.+ ...||+|+
T Consensus 294 ~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~-~~~~k~vi 333 (334)
T cd08234 294 ALLESGKIDVKGLVSHRLPLEEVPEALEGMRS-GGALKVVV 333 (334)
T ss_pred HHHHcCCCChhhhEEEEecHHHHHHHHHHHhc-CCceEEEe
Confidence 99999998753 3445999999999999998 77899886
No 108
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=99.12 E-value=2.3e-09 Score=71.47 Aligned_cols=103 Identities=25% Similarity=0.242 Sum_probs=79.6
Q ss_pred ceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHHH
Q 035717 4 EGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIPH 83 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (125)
+++|+++|++|+.....++++++++|+++.+|.... . . . ....++.++....+... .+.+.+++++
T Consensus 207 ~~~d~v~~~~~~~~~~~~~~~l~~~g~~v~~g~~~~-----~--~-~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 272 (309)
T cd05289 207 GGVDAVLDTVGGETLARSLALVKPGGRLVSIAGPPP-----A--E-Q--AAKRRGVRAGFVFVEPD----GEQLAELAEL 272 (309)
T ss_pred CCceEEEECCchHHHHHHHHHHhcCcEEEEEcCCCc-----c--h-h--hhhhccceEEEEEeccc----HHHHHHHHHH
Confidence 479999999999888999999999999999986431 0 0 1 23345666666544211 5678999999
Q ss_pred HHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEE
Q 035717 84 IKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVA 120 (125)
Q Consensus 84 ~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi 120 (125)
++++.+.+.....|+++++++|++.+.++...||+++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~ 309 (309)
T cd05289 273 VEAGKLRPVVDRVFPLEDAAEAHERLESGHARGKVVL 309 (309)
T ss_pred HHCCCEEEeeccEEcHHHHHHHHHHHHhCCCCCcEeC
Confidence 9999988765556999999999999998877788764
No 109
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=99.12 E-value=2e-09 Score=73.43 Aligned_cols=107 Identities=20% Similarity=0.190 Sum_probs=79.4
Q ss_pred ceeeEEEeCCch-HHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHH
Q 035717 4 EGIDIYFENVGG-KMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIP 82 (125)
Q Consensus 4 ~g~Dvv~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (125)
.++|++||++|+ ..+..++++++++|+++.+|.... . ...+...++.+++++.+.... ...++++++
T Consensus 234 ~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~g~~~~-----~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 301 (345)
T cd08286 234 RGVDVVIEAVGIPATFELCQELVAPGGHIANVGVHGK-----P-VDLHLEKLWIKNITITTGLVD------TNTTPMLLK 301 (345)
T ss_pred CCCCEEEECCCCHHHHHHHHHhccCCcEEEEecccCC-----C-CCcCHHHHhhcCcEEEeecCc------hhhHHHHHH
Confidence 479999999985 568889999999999999986321 1 223444456788888775332 134788889
Q ss_pred HHHcCceeee--eecccchhHHHHHHHHHhcCC--CcCeEEEEe
Q 035717 83 HIKWAKIVYI--EDTAEGLESALAARVGLFSGR--NLGKQVAAV 122 (125)
Q Consensus 83 l~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~--~~gkvvi~~ 122 (125)
++++|.+.+. ...+|+++++++|++.+.... ...|++|++
T Consensus 302 ~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~k~~~~~ 345 (345)
T cd08286 302 LVSSGKLDPSKLVTHRFKLSEIEKAYDTFSAAAKHKALKVIIDF 345 (345)
T ss_pred HHHcCCCChHHcEEeEeeHHHHHHHHHHHhccCCCCeeEEEEeC
Confidence 9999998753 345599999999999998753 345888864
No 110
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=99.12 E-value=1.7e-09 Score=74.50 Aligned_cols=110 Identities=16% Similarity=0.178 Sum_probs=80.4
Q ss_pred CceeeEEEeCCch-HHHHHHHHhhc-cCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHH
Q 035717 3 PEGIDIYFENVGG-KMLDAVLINMK-IGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMI 80 (125)
Q Consensus 3 ~~g~Dvv~d~~g~-~~~~~~~~~l~-~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
++++|+++|++|. ..+..++++++ ++|+++.+|..... ....++...+ .++.++.|.+...+. ..+.+.++
T Consensus 251 ~~~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~----~~~~~~~~~~-~~~~~l~g~~~~~~~--~~~~~~~~ 323 (365)
T cd05279 251 DGGVDYAFEVIGSADTLKQALDATRLGGGTSVVVGVPPSG----TEATLDPNDL-LTGRTIKGTVFGGWK--SKDSVPKL 323 (365)
T ss_pred CCCCcEEEECCCCHHHHHHHHHHhccCCCEEEEEecCCCC----CceeeCHHHH-hcCCeEEEEeccCCc--hHhHHHHH
Confidence 4689999999985 67889999999 99999999864210 1122344444 567788887654432 23457888
Q ss_pred HHHHHcCceeee--eecccchhHHHHHHHHHhcCCCcCeEEE
Q 035717 81 IPHIKWAKIVYI--EDTAEGLESALAARVGLFSGRNLGKQVA 120 (125)
Q Consensus 81 ~~l~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~gkvvi 120 (125)
++++++|.+.+. ...+|+++++++|++.+++++. .|+++
T Consensus 324 ~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~-~~~~~ 364 (365)
T cd05279 324 VALYRQKKFPLDELITHVLPFEEINDGFDLMRSGES-IRTIL 364 (365)
T ss_pred HHHHHcCCcchhHheeeeecHHHHHHHHHHHhCCCc-eeeee
Confidence 999999998864 4445899999999999987654 46665
No 111
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=99.11 E-value=3.2e-09 Score=71.64 Aligned_cols=114 Identities=20% Similarity=0.230 Sum_probs=85.5
Q ss_pred CceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccc-cchHHHHHHHH
Q 035717 3 PEGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYN-HLYPKFLEMII 81 (125)
Q Consensus 3 ~~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 81 (125)
+.++|.++|++|+......+.+++.+|+++.+|..... + .......++.+++++.+++..... ....+.++.+.
T Consensus 210 ~~~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~G~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (324)
T cd08288 210 KERWAGAVDTVGGHTLANVLAQTRYGGAVAACGLAGGA----D-LPTTVMPFILRGVTLLGIDSVMAPIERRRAAWARLA 284 (324)
T ss_pred cCcccEEEECCcHHHHHHHHHHhcCCCEEEEEEecCCC----C-CCcchhhhhccccEEEEEEeecccchhhHHHHHHHH
Confidence 34688999999987778888999999999999874210 1 112333444788999987643322 23456788888
Q ss_pred HHHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEEe
Q 035717 82 PHIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 82 ~l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 122 (125)
+++.++.+.+. ...++++++++|++.+.+++..||+++++
T Consensus 285 ~~~~~~~~~~i-~~~~~~~~~~~a~~~~~~~~~~~~vvv~~ 324 (324)
T cd08288 285 RDLDPALLEAL-TREIPLADVPDAAEAILAGQVRGRVVVDV 324 (324)
T ss_pred HHHhcCCcccc-ceeecHHHHHHHHHHHhcCCccCeEEEeC
Confidence 99999988764 44599999999999999999899999864
No 112
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=99.11 E-value=2.6e-09 Score=72.44 Aligned_cols=109 Identities=13% Similarity=0.123 Sum_probs=77.2
Q ss_pred ceeeEEEeCCc-hHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecc---c--ccch--HH
Q 035717 4 EGIDIYFENVG-GKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSD---Y--NHLY--PK 75 (125)
Q Consensus 4 ~g~Dvv~d~~g-~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~--~~ 75 (125)
+++|+++|+++ +.....++++++++|+++.++... ..+...+..+++++.+..+.. + +... ..
T Consensus 215 ~~vd~vl~~~~~~~~~~~~~~~l~~~G~~v~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (336)
T TIGR02817 215 EAVSYVFSLTHTDQHFKEIVELLAPQGRFALIDDPA---------ELDISPFKRKSISLHWEFMFTRSMFQTADMIEQHH 285 (336)
T ss_pred CCCCEEEEcCCcHHHHHHHHHHhccCCEEEEEcccc---------cccchhhhhcceEEEEEEeecccccchhhhhhhHH
Confidence 57999999985 567889999999999999875311 112223344556666533321 1 1111 25
Q ss_pred HHHHHHHHHHcCceeeeeeccc---chhHHHHHHHHHhcCCCcCeEEEE
Q 035717 76 FLEMIIPHIKWAKIVYIEDTAE---GLESALAARVGLFSGRNLGKQVAA 121 (125)
Q Consensus 76 ~~~~~~~l~~~g~i~~~~~~~~---~l~~~~~a~~~~~~~~~~gkvvi~ 121 (125)
.++++++++.+|.+++.+...+ +++++++|++.+.+++..||+++.
T Consensus 286 ~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~ 334 (336)
T TIGR02817 286 LLNRVARLVDAGKIRTTLAETFGTINAANLKRAHALIESGKARGKIVLE 334 (336)
T ss_pred HHHHHHHHHHCCCeeccchhccCCCCHHHHHHHHHHHHcCCccceEEEe
Confidence 6889999999999987544433 579999999999999888998875
No 113
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=99.11 E-value=4e-10 Score=74.99 Aligned_cols=112 Identities=13% Similarity=0.167 Sum_probs=78.9
Q ss_pred ceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecc----cccchHHHHHH
Q 035717 4 EGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSD----YNHLYPKFLEM 79 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 79 (125)
+++|+++|++++.....++++++++|+++.+|...... ....... .+.++..+....+.. .+....+.+.+
T Consensus 188 ~~~d~v~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (303)
T cd08251 188 RGVDVVINTLSGEAIQKGLNCLAPGGRYVEIAMTALKS----APSVDLS-VLSNNQSFHSVDLRKLLLLDPEFIADYQAE 262 (303)
T ss_pred CCceEEEECCcHHHHHHHHHHhccCcEEEEEeccCCCc----cCccChh-HhhcCceEEEEehHHhhhhCHHHHHHHHHH
Confidence 57999999999888889999999999999998643210 0111211 233344433332211 12234567888
Q ss_pred HHHHHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEE
Q 035717 80 IIPHIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVA 120 (125)
Q Consensus 80 ~~~l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi 120 (125)
+++++++|.+++.....|++++++++++.+.+++..||+++
T Consensus 263 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~ 303 (303)
T cd08251 263 MVSLVEEGELRPTVSRIFPFDDIGEAYRYLSDRENIGKVVV 303 (303)
T ss_pred HHHHHHCCCccCCCceEEcHHHHHHHHHHHHhCCCcceEeC
Confidence 99999999988765556999999999999999888888874
No 114
>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.10 E-value=1.2e-09 Score=73.46 Aligned_cols=116 Identities=15% Similarity=0.083 Sum_probs=79.1
Q ss_pred CceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeeccc---ccchHHHHHH
Q 035717 3 PEGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDY---NHLYPKFLEM 79 (125)
Q Consensus 3 ~~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 79 (125)
++|+|++++++|+.....++++++++|+++.+|..... ............+++.+.+.+.... .....+.+.+
T Consensus 207 ~~~~d~vi~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (325)
T cd08271 207 GRGVDAVLDTVGGETAAALAPTLAFNGHLVCIQGRPDA----SPDPPFTRALSVHEVALGAAHDHGDPAAWQDLRYAGEE 282 (325)
T ss_pred CCCCcEEEECCCcHhHHHHHHhhccCCEEEEEcCCCCC----cchhHHhhcceEEEEEecccccccchhhHHHHHHHHHH
Confidence 35799999999987777899999999999998753211 0000000111223333333322211 0234566788
Q ss_pred HHHHHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEEe
Q 035717 80 IIPHIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 80 ~~~l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 122 (125)
++++++++.+.+.....|+++++.+|++.+.++...||+++++
T Consensus 283 ~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~~kiv~~~ 325 (325)
T cd08271 283 LLELLAAGKLEPLVIEVLPFEQLPEALRALKDRHTRGKIVVTI 325 (325)
T ss_pred HHHHHHCCCeeeccceEEcHHHHHHHHHHHHcCCccceEEEEC
Confidence 8999999999876445599999999999999888889998864
No 115
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=99.09 E-value=1.8e-09 Score=71.42 Aligned_cols=111 Identities=18% Similarity=0.178 Sum_probs=77.6
Q ss_pred ceeeEEEeCCch-HHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccc-------cchHH
Q 035717 4 EGIDIYFENVGG-KMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYN-------HLYPK 75 (125)
Q Consensus 4 ~g~Dvv~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 75 (125)
+++|++||++|. .....++++++++|+++.+|..... . ......+..++.++.+....... ....+
T Consensus 158 ~~~d~vl~~~~~~~~~~~~~~~l~~~g~~~~~g~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (277)
T cd08255 158 RGADVVIEASGSPSALETALRLLRDRGRVVLVGWYGLK----P--LLLGEEFHFKRLPIRSSQVYGIGRYDRPRRWTEAR 231 (277)
T ss_pred CCCCEEEEccCChHHHHHHHHHhcCCcEEEEEeccCCC----c--cccHHHHHhccCeEEeecccccccccccccccccc
Confidence 579999999884 5688999999999999999875421 0 11112234455566665433211 11235
Q ss_pred HHHHHHHHHHcCceeeeeecccchhHHHHHHHHHhcC-CCcCeEEE
Q 035717 76 FLEMIIPHIKWAKIVYIEDTAEGLESALAARVGLFSG-RNLGKQVA 120 (125)
Q Consensus 76 ~~~~~~~l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~-~~~gkvvi 120 (125)
.++++++++++|.+.+.....|+++++++|++.++++ ....|+++
T Consensus 232 ~~~~~~~l~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~k~~~ 277 (277)
T cd08255 232 NLEEALDLLAEGRLEALITHRVPFEDAPEAYRLLFEDPPECLKVVL 277 (277)
T ss_pred cHHHHHHHHHcCCccccccCccCHHHHHHHHHHHHcCCccceeeeC
Confidence 6889999999999887655569999999999999876 34456653
No 116
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=99.09 E-value=3e-09 Score=73.74 Aligned_cols=106 Identities=19% Similarity=0.147 Sum_probs=77.2
Q ss_pred ceeeEEEeCCchH--HHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHH
Q 035717 4 EGIDIYFENVGGK--MLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMII 81 (125)
Q Consensus 4 ~g~Dvv~d~~g~~--~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (125)
+|+|+|+|++|+. .+..++++++++|+++.+|.... ....+...+..+..++.+.+... ....+.+++
T Consensus 274 ~gvDvvld~~g~~~~~~~~~~~~l~~~G~~v~~g~~~~------~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~ 343 (384)
T cd08265 274 WGADIQVEAAGAPPATIPQMEKSIAINGKIVYIGRAAT------TVPLHLEVLQVRRAQIVGAQGHS----GHGIFPSVI 343 (384)
T ss_pred CCCCEEEECCCCcHHHHHHHHHHHHcCCEEEEECCCCC------CCcccHHHHhhCceEEEEeeccC----CcchHHHHH
Confidence 5799999999963 67899999999999999986431 11223344455566777664211 123488899
Q ss_pred HHHHcCceeee--eecccchhHHHHHHHHHhcCCCcCeEEE
Q 035717 82 PHIKWAKIVYI--EDTAEGLESALAARVGLFSGRNLGKQVA 120 (125)
Q Consensus 82 ~l~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~gkvvi 120 (125)
+++++|.+++. ...+|+++++.+|++.+.++ ..||+++
T Consensus 344 ~ll~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~-~~~kvvv 383 (384)
T cd08265 344 KLMASGKIDMTKIITARFPLEGIMEAIKAASER-TDGKITI 383 (384)
T ss_pred HHHHcCCCChHHheEEEeeHHHHHHHHHHHhcC-CCceEEe
Confidence 99999999864 34459999999999997665 5788886
No 117
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.07 E-value=2.7e-09 Score=72.71 Aligned_cols=106 Identities=16% Similarity=0.182 Sum_probs=79.3
Q ss_pred ceeeEEEeCCch-HHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHH
Q 035717 4 EGIDIYFENVGG-KMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIP 82 (125)
Q Consensus 4 ~g~Dvv~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (125)
.++|+++|++|+ ..+..++++++++|+++.+|.... . ...+....+.+++++.+... ...+.+.++++
T Consensus 236 ~~~d~il~~~g~~~~~~~~~~~l~~~g~~v~~g~~~~-----~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 304 (345)
T cd08287 236 VGADAVLECVGTQESMEQAIAIARPGGRVGYVGVPHG-----G-VELDVRELFFRNVGLAGGPA-----PVRRYLPELLD 304 (345)
T ss_pred CCCCEEEECCCCHHHHHHHHHhhccCCEEEEecccCC-----C-CccCHHHHHhcceEEEEecC-----CcHHHHHHHHH
Confidence 479999999985 578999999999999999876431 1 12233345677888876421 22346889999
Q ss_pred HHHcCceeee--eecccchhHHHHHHHHHhcCCCcCeEEEE
Q 035717 83 HIKWAKIVYI--EDTAEGLESALAARVGLFSGRNLGKQVAA 121 (125)
Q Consensus 83 l~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~gkvvi~ 121 (125)
++++|.+++. +..+++++++++|++.+.+++. .|++|+
T Consensus 305 ~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~-~k~~~~ 344 (345)
T cd08287 305 DVLAGRINPGRVFDLTLPLDEVAEGYRAMDERRA-IKVLLR 344 (345)
T ss_pred HHHcCCCCHHHhEEeeecHHHHHHHHHHHhCCCc-eEEEeC
Confidence 9999999863 3445999999999999887654 499885
No 118
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.07 E-value=1.6e-09 Score=73.87 Aligned_cols=118 Identities=19% Similarity=0.104 Sum_probs=76.3
Q ss_pred ceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCC--cccHHHHHhccceeeeee----e-cccccchHHH
Q 035717 4 EGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKG--IHNLTRLILKQVRMEGFL----V-SDYNHLYPKF 76 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~ 76 (125)
+++|++||++|+.....++++++++|+++.+|.....+...... .............+..+. . ........+.
T Consensus 226 ~~vd~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (350)
T cd08248 226 GKFDVILDTVGGDTEKWALKLLKKGGTYVTLVSPLLKNTDKLGLVGGMLKSAVDLLKKNVKSLLKGSHYRWGFFSPSGSA 305 (350)
T ss_pred CCCCEEEECCChHHHHHHHHHhccCCEEEEecCCcccccccccccchhhhhHHHHHHHHHHHHhcCCCeeEEEECCCHHH
Confidence 47999999999988999999999999999998543111000000 000000111111111110 0 0001123567
Q ss_pred HHHHHHHHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEE
Q 035717 77 LEMIIPHIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAA 121 (125)
Q Consensus 77 ~~~~~~l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~ 121 (125)
+.++++++++|.+.+.....|+++++.+|++.+.++...+|++++
T Consensus 306 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~vv~~ 350 (350)
T cd08248 306 LDELAKLVEDGKIKPVIDKVFPFEEVPEAYEKVESGHARGKTVIK 350 (350)
T ss_pred HHHHHHHHhCCCEecccceeecHHHHHHHHHHHhcCCCceEEEeC
Confidence 899999999999987655669999999999999988778888863
No 119
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=99.06 E-value=3.1e-09 Score=71.96 Aligned_cols=106 Identities=21% Similarity=0.202 Sum_probs=79.8
Q ss_pred ceeeEEEeCCc-hHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHH
Q 035717 4 EGIDIYFENVG-GKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIP 82 (125)
Q Consensus 4 ~g~Dvv~d~~g-~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (125)
+++|+++|+++ ......++++++++|+++.+|.... .....+...+..++.++.+..... .+.++++++
T Consensus 224 ~~~d~vi~~~~~~~~~~~~~~~l~~~G~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 293 (330)
T cd08245 224 GGADVILVTVVSGAAAEAALGGLRRGGRIVLVGLPES-----PPFSPDIFPLIMKRQSIAGSTHGG-----RADLQEALD 293 (330)
T ss_pred CCCCEEEECCCcHHHHHHHHHhcccCCEEEEECCCCC-----CccccchHHHHhCCCEEEEeccCC-----HHHHHHHHH
Confidence 47999999977 4678899999999999999986431 111112344566777777765432 245788889
Q ss_pred HHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEE
Q 035717 83 HIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVA 120 (125)
Q Consensus 83 l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi 120 (125)
++.++.+.+.. ..|+++++.+|++.+.+++..||+++
T Consensus 294 ll~~~~l~~~~-~~~~~~~~~~a~~~~~~~~~~~~~v~ 330 (330)
T cd08245 294 FAAEGKVKPMI-ETFPLDQANEAYERMEKGDVRFRFVL 330 (330)
T ss_pred HHHcCCCcceE-EEEcHHHHHHHHHHHHcCCCCcceeC
Confidence 99999988633 45899999999999999988899875
No 120
>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast. This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi
Probab=99.06 E-value=2.7e-09 Score=72.97 Aligned_cols=120 Identities=18% Similarity=0.114 Sum_probs=76.9
Q ss_pred CceeeEEEeCCch-HHHHHHHHhhc---cCCEEEEEccccccCCCC-CCC----cccHHHHHhccceeeeeeeccc-ccc
Q 035717 3 PEGIDIYFENVGG-KMLDAVLINMK---IGGQIAVCGMISQYNLDE-PKG----IHNLTRLILKQVRMEGFLVSDY-NHL 72 (125)
Q Consensus 3 ~~g~Dvv~d~~g~-~~~~~~~~~l~---~~G~~v~~g~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~ 72 (125)
.+|+|++|||+|+ .....++++++ ++|+++.++.....+... +.. .......+.++.++..+..... ...
T Consensus 223 ~~~~d~vl~~~g~~~~~~~~~~~l~~~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (352)
T cd08247 223 QGKFDLILDCVGGYDLFPHINSILKPKSKNGHYVTIVGDYKANYKKDTFNSWDNPSANARKLFGSLGLWSYNYQFFLLDP 302 (352)
T ss_pred CCCceEEEECCCCHHHHHHHHHHhCccCCCCEEEEEeCCCcccccchhhhhccccchhhhhhhhhhcCCCcceEEEEecC
Confidence 3589999999998 57788999999 999999875322100000 000 0000011222332222211100 011
Q ss_pred hHHHHHHHHHHHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEEe
Q 035717 73 YPKFLEMIIPHIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 73 ~~~~~~~~~~l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 122 (125)
..+.+.++++++.+|.+.+.....++++++++|++.+++++..||+++++
T Consensus 303 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 352 (352)
T cd08247 303 NADWIEKCAELIADGKVKPPIDSVYPFEDYKEAFERLKSNRAKGKVVIKV 352 (352)
T ss_pred CHHHHHHHHHHHhCCCeEeeeccEecHHHHHHHHHHHHcCCCCCcEEEeC
Confidence 13568889999999999876556699999999999999988889999863
No 121
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=99.03 E-value=5.3e-09 Score=68.91 Aligned_cols=112 Identities=16% Similarity=0.207 Sum_probs=78.7
Q ss_pred ceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecc---cccchHHHHHHH
Q 035717 4 EGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSD---YNHLYPKFLEMI 80 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 80 (125)
+++|+++|++|+.....++++++++|+++.+|...... . ....... +.+++++.+..+.. .+......+.++
T Consensus 174 ~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~--~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (288)
T smart00829 174 RGVDVVLNSLAGEFLDASLRCLAPGGRFVEIGKRDIRD--N--SQLGMAP-FRRNVSYHAVDLDALEEGPDRIRELLAEV 248 (288)
T ss_pred CCcEEEEeCCCHHHHHHHHHhccCCcEEEEEcCcCCcc--c--cccchhh-hcCCceEEEEEHHHhhcChHHHHHHHHHH
Confidence 47999999999888889999999999999998643110 0 1112222 34556665554321 111234557788
Q ss_pred HHHHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEE
Q 035717 81 IPHIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVA 120 (125)
Q Consensus 81 ~~l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi 120 (125)
+++++++++.+.....|++++++++++.+..++..||+++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv 288 (288)
T smart00829 249 LELFAEGVLRPLPVTVFPISDVEDAFRYMQQGKHIGKVVL 288 (288)
T ss_pred HHHHHCCCccCcCceEEcHHHHHHHHHHHhcCCCcceEeC
Confidence 8999999987654445999999999999998877788764
No 122
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=99.03 E-value=3.4e-09 Score=69.88 Aligned_cols=112 Identities=18% Similarity=0.240 Sum_probs=80.2
Q ss_pred ceeeEEEeCCchHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeeccc----ccchHHHHHH
Q 035717 4 EGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDY----NHLYPKFLEM 79 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 79 (125)
+++|+++|++|+.....++++++++|+++.+|.....+. . .... ..+.+++.+.++.+... .....+.+.+
T Consensus 178 ~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~--~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (293)
T cd05195 178 RGVDVVLNSLSGELLRASWRCLAPFGRFVEIGKRDILSN--S--KLGM-RPFLRNVSFSSVDLDQLARERPELLRELLRE 252 (293)
T ss_pred CCceEEEeCCCchHHHHHHHhcccCceEEEeeccccccC--C--ccch-hhhccCCeEEEEeHHHHhhhChHHHHHHHHH
Confidence 479999999998889999999999999999986432110 0 1111 12334555555433221 1223456788
Q ss_pred HHHHHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEE
Q 035717 80 IIPHIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVA 120 (125)
Q Consensus 80 ~~~l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi 120 (125)
+.+++.++.+.+.....+++++++++++.+..++..||+++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ivv 293 (293)
T cd05195 253 VLELLEAGVLKPLPPTVVPSASEIDAFRLMQSGKHIGKVVL 293 (293)
T ss_pred HHHHHHCCCcccCCCeeechhhHHHHHHHHhcCCCCceecC
Confidence 89999999998766666899999999999998888888764
No 123
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=98.96 E-value=1.7e-09 Score=72.01 Aligned_cols=90 Identities=14% Similarity=0.275 Sum_probs=64.5
Q ss_pred ceeeEEEeCCchH-HHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHH
Q 035717 4 EGIDIYFENVGGK-MLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIP 82 (125)
Q Consensus 4 ~g~Dvv~d~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (125)
.|+|++||++|.. .++.++++++++|+++.+|..... ....++...++.+++++.|++.+. ...++++++
T Consensus 186 ~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~----~~~~i~~~~~~~~~~~i~g~~~~~-----~~~~~~~~~ 256 (280)
T TIGR03366 186 RGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPG----GPVALDPEQVVRRWLTIRGVHNYE-----PRHLDQAVR 256 (280)
T ss_pred CCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccCCCC----CceeeCHHHHHhCCcEEEecCCCC-----HHHHHHHHH
Confidence 4799999999864 688999999999999999964311 112345667788999999976432 234888999
Q ss_pred HHHcC--ceeee--eecccchhHH
Q 035717 83 HIKWA--KIVYI--EDTAEGLESA 102 (125)
Q Consensus 83 l~~~g--~i~~~--~~~~~~l~~~ 102 (125)
++.++ ++.+. +..+|+|+|+
T Consensus 257 ~l~~~~~~~~~~~~it~~~~l~~~ 280 (280)
T TIGR03366 257 FLAANGQRFPFEELVGKPFPLADV 280 (280)
T ss_pred HHHhhCCCCCHHHHhhcccccccC
Confidence 99875 44432 3334888763
No 124
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=98.95 E-value=1.2e-08 Score=69.03 Aligned_cols=105 Identities=20% Similarity=0.127 Sum_probs=75.5
Q ss_pred ceeeEEEeCCc-hHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHH
Q 035717 4 EGIDIYFENVG-GKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIP 82 (125)
Q Consensus 4 ~g~Dvv~d~~g-~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (125)
+++|+++++.+ +..++.++++++++|+++.+|.... .....+.. .+.++..+.+.... ..+.++++++
T Consensus 224 ~~vD~vi~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~-----~~~~~~~~-~~~~~~~i~~~~~~-----~~~~~~~~~~ 292 (329)
T cd08298 224 EPLDAAIIFAPVGALVPAALRAVKKGGRVVLAGIHMS-----DIPAFDYE-LLWGEKTIRSVANL-----TRQDGEEFLK 292 (329)
T ss_pred CcccEEEEcCCcHHHHHHHHHHhhcCCEEEEEcCCCC-----CCCccchh-hhhCceEEEEecCC-----CHHHHHHHHH
Confidence 47999999765 4578999999999999998874221 11112222 23455555554321 2345788999
Q ss_pred HHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEE
Q 035717 83 HIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVA 120 (125)
Q Consensus 83 l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi 120 (125)
+++++.+.+. ..+|+++++++|++.+.+++..||+++
T Consensus 293 l~~~~~l~~~-~~~~~~~~~~~a~~~~~~~~~~~~~v~ 329 (329)
T cd08298 293 LAAEIPIKPE-VETYPLEEANEALQDLKEGRIRGAAVL 329 (329)
T ss_pred HHHcCCCCce-EEEEeHHHHHHHHHHHHcCCCcceeeC
Confidence 9999998874 345999999999999999888899874
No 125
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=98.85 E-value=7.7e-08 Score=64.57 Aligned_cols=110 Identities=26% Similarity=0.185 Sum_probs=71.3
Q ss_pred ceeeEEEeCCchH--HHHHHHHhhccCCEEEEEccccccCCCCCCCccc-HHHHHhccceeeeeeecccccchHHHHHHH
Q 035717 4 EGIDIYFENVGGK--MLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHN-LTRLILKQVRMEGFLVSDYNHLYPKFLEMI 80 (125)
Q Consensus 4 ~g~Dvv~d~~g~~--~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
+++|+++||+|+. .....+..++++|+++.+|...... .....+ ..........+..... .. ..+.+.++
T Consensus 207 ~~~d~vi~~~~~~~~~~~~~~~~l~~~g~~i~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~ 279 (319)
T cd08267 207 EKYDVIFDAVGNSPFSLYRASLALKPGGRYVSVGGGPSGL---LLVLLLLPLTLGGGGRRLKFFLA--KP--NAEDLEQL 279 (319)
T ss_pred CCCcEEEECCCchHHHHHHhhhccCCCCEEEEeccccccc---cccccccchhhccccceEEEEEe--cC--CHHHHHHH
Confidence 5799999999953 3334444599999999998743211 000000 0011111122222211 11 15678899
Q ss_pred HHHHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEE
Q 035717 81 IPHIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVA 120 (125)
Q Consensus 81 ~~l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi 120 (125)
+++++++.+.+.....|+++++++|++.+.++...||+++
T Consensus 280 ~~~l~~~~~~~~~~~~~~~~~i~~a~~~~~~~~~~~~vvv 319 (319)
T cd08267 280 AELVEEGKLKPVIDSVYPLEDAPEAYRRLKSGRARGKVVI 319 (319)
T ss_pred HHHHHCCCeeeeeeeEEcHHHHHHHHHHHhcCCCCCcEeC
Confidence 9999999998766666999999999999998877888874
No 126
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=98.74 E-value=2.7e-07 Score=63.88 Aligned_cols=111 Identities=17% Similarity=0.171 Sum_probs=73.7
Q ss_pred ceeeEEEeCCch-HHHHHHHHhh-ccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHH
Q 035717 4 EGIDIYFENVGG-KMLDAVLINM-KIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMII 81 (125)
Q Consensus 4 ~g~Dvv~d~~g~-~~~~~~~~~l-~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (125)
+++|+++|++|+ ..+..++..+ +++|+++.+|..... ........ .+.++.++.+++...+.. ...+.+++
T Consensus 259 ~~~d~vld~~g~~~~~~~~~~~~~~~~G~~v~~g~~~~~----~~~~~~~~-~~~~~~~i~~~~~~~~~~--~~~~~~~~ 331 (373)
T cd08299 259 GGVDFSFEVIGRLDTMKAALASCHEGYGVSVIVGVPPSS----QNLSINPM-LLLTGRTWKGAVFGGWKS--KDSVPKLV 331 (373)
T ss_pred CCCeEEEECCCCcHHHHHHHHhhccCCCEEEEEccCCCC----ceeecCHH-HHhcCCeEEEEEecCCcc--HHHHHHHH
Confidence 579999999996 5677767755 579999999874321 01112222 244677888887655431 22355666
Q ss_pred HHHHcCceee--eeecccchhHHHHHHHHHhcCCCcCeEEEEe
Q 035717 82 PHIKWAKIVY--IEDTAEGLESALAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 82 ~l~~~g~i~~--~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 122 (125)
+.+.++.+++ .+..+|+++++.+|++.+.+++. .|+++++
T Consensus 332 ~~~~~~~~~~~~~~~~~~~l~e~~~a~~~~~~~~~-~k~~~~~ 373 (373)
T cd08299 332 ADYMAKKFNLDPLITHTLPFEKINEGFDLLRSGKS-IRTVLTF 373 (373)
T ss_pred HHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCc-ceEEEeC
Confidence 6676766543 34455999999999999987664 5887763
No 127
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=98.58 E-value=4.5e-07 Score=61.11 Aligned_cols=74 Identities=22% Similarity=0.326 Sum_probs=57.6
Q ss_pred ceeeEEEeCCch-HHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHHH
Q 035717 4 EGIDIYFENVGG-KMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMIIP 82 (125)
Q Consensus 4 ~g~Dvv~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (125)
+++|+++|++|+ ..+..++++|+++|+++.+|..+. .....+...++.+++++.|++++...+ ++++++
T Consensus 232 ~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-----~~~~~~~~~~~~~~~~i~g~~~~~~~~-----~~~~~~ 301 (306)
T cd08258 232 DGADVVIECSGAVPALEQALELLRKGGRIVQVGIFGP-----LAASIDVERIIQKELSVIGSRSSTPAS-----WETALR 301 (306)
T ss_pred CCCCEEEECCCChHHHHHHHHHhhcCCEEEEEcccCC-----CCcccCHHHHhhcCcEEEEEecCchHh-----HHHHHH
Confidence 579999999974 578899999999999999988542 112335566778999999998765443 888888
Q ss_pred HHHcC
Q 035717 83 HIKWA 87 (125)
Q Consensus 83 l~~~g 87 (125)
++++|
T Consensus 302 ~~~~~ 306 (306)
T cd08258 302 LLASG 306 (306)
T ss_pred HHhcC
Confidence 88775
No 128
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=98.48 E-value=1.2e-06 Score=61.35 Aligned_cols=108 Identities=13% Similarity=0.015 Sum_probs=75.8
Q ss_pred ceeeEEEeCCchH-HHHHH-HHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHH--H
Q 035717 4 EGIDIYFENVGGK-MLDAV-LINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLE--M 79 (125)
Q Consensus 4 ~g~Dvv~d~~g~~-~~~~~-~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 79 (125)
.++|+||+|+|.. .+... +++++++|+++.+|.. ...++...+..+++++.+...+.... .+. +
T Consensus 256 ~~aDVVI~atG~~~~i~~~~l~~mk~GgilvnvG~~--------~~eId~~~L~~~el~i~g~~~~~~~~----~~~~g~ 323 (413)
T cd00401 256 KEGDIFVTTTGNKDIITGEHFEQMKDGAIVCNIGHF--------DVEIDVKGLKENAVEVVNIKPQVDRY----ELPDGR 323 (413)
T ss_pred cCCCEEEECCCCHHHHHHHHHhcCCCCcEEEEeCCC--------CCccCHHHHHhhccEEEEccCCcceE----EcCCcc
Confidence 3689999999965 46655 9999999999999852 12346666777888888876432110 133 6
Q ss_pred HHHHHHcCce-eee--eecc-----cchh-HHHHHHHHHhcCCC-cCeEEEEec
Q 035717 80 IIPHIKWAKI-VYI--EDTA-----EGLE-SALAARVGLFSGRN-LGKQVAAVA 123 (125)
Q Consensus 80 ~~~l~~~g~i-~~~--~~~~-----~~l~-~~~~a~~~~~~~~~-~gkvvi~~~ 123 (125)
.+.++.+|++ ... +... ++|+ |+.++++.+.+++. .-|+++.+.
T Consensus 324 aI~LLa~Grlvnl~~~~gH~~~vmd~sf~~q~l~a~~l~~~~~~~~~kV~~~p~ 377 (413)
T cd00401 324 RIILLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELWTNRDKYEVGVYFLPK 377 (413)
T ss_pred hhhhhhCcCCCCCcccCCCccceechhHHHHHHHHHHHHhcCCcCCCcEEECCH
Confidence 7899999988 322 2222 7788 99999999987653 346776654
No 129
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=98.03 E-value=3e-05 Score=50.79 Aligned_cols=71 Identities=27% Similarity=0.406 Sum_probs=50.6
Q ss_pred CceeeEEEeCCch-HHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHHH
Q 035717 3 PEGIDIYFENVGG-KMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMII 81 (125)
Q Consensus 3 ~~g~Dvv~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (125)
.+++|+++|++|+ .....++++++++|+++.+|...... ........+.+++++.++..+.+.. +++++
T Consensus 199 ~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 268 (271)
T cd05188 199 GGGADVVIDAVGGPETLAQALRLLRPGGRIVVVGGTSGGP-----PLDDLRRLLFKELTIIGSTGGTRED-----FEEAL 268 (271)
T ss_pred CCCCCEEEECCCCHHHHHHHHHhcccCCEEEEEccCCCCC-----CcccHHHHHhcceEEEEeecCCHHH-----HHHHH
Confidence 3579999999998 77889999999999999998754211 1112445677899999987654432 55554
Q ss_pred HH
Q 035717 82 PH 83 (125)
Q Consensus 82 ~l 83 (125)
++
T Consensus 269 ~~ 270 (271)
T cd05188 269 DL 270 (271)
T ss_pred hh
Confidence 43
No 130
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=97.40 E-value=0.0024 Score=42.54 Aligned_cols=104 Identities=15% Similarity=0.174 Sum_probs=57.5
Q ss_pred ceeeEEEeCC------c-hHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHH
Q 035717 4 EGIDIYFENV------G-GKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKF 76 (125)
Q Consensus 4 ~g~Dvv~d~~------g-~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (125)
.++|+|+... . ...+..++++|+|+|+++..+.... .. .+ ....+...+.+........
T Consensus 145 ~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~----~~---~~--~~~~~~~~~~~~~~~~~~~----- 210 (272)
T PRK11873 145 NSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLR----GE---LP--EEIRNDAELYAGCVAGALQ----- 210 (272)
T ss_pred CceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeecc----CC---CC--HHHHHhHHHHhccccCCCC-----
Confidence 4689998533 2 2368999999999999998765431 11 11 1122222222111111111
Q ss_pred HHHHHHHHHcCceeee---eecccchhHHHHHHHHH--hcCCCcCeEEEE
Q 035717 77 LEMIIPHIKWAKIVYI---EDTAEGLESALAARVGL--FSGRNLGKQVAA 121 (125)
Q Consensus 77 ~~~~~~l~~~g~i~~~---~~~~~~l~~~~~a~~~~--~~~~~~gkvvi~ 121 (125)
.+++.+++++..+... ....+++++..++++.+ ..++..++.+..
T Consensus 211 ~~e~~~~l~~aGf~~v~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 260 (272)
T PRK11873 211 EEEYLAMLAEAGFVDITIQPKREYRIPDAREFLEDWGIAPGRQLDGYIVS 260 (272)
T ss_pred HHHHHHHHHHCCCCceEEEeccceecccHHHHHHHhccccccccCceEEE
Confidence 3455566666433322 22337889999999998 555545555443
No 131
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.21 E-value=0.00073 Score=48.86 Aligned_cols=81 Identities=11% Similarity=0.031 Sum_probs=52.1
Q ss_pred ceeeEEEeCCchH------H-HHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHh-ccceeeeeeecccccchHH
Q 035717 4 EGIDIYFENVGGK------M-LDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLIL-KQVRMEGFLVSDYNHLYPK 75 (125)
Q Consensus 4 ~g~Dvv~d~~g~~------~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 75 (125)
+++|+||+|+|.+ . .+++++.++++|+++.+|...+.+.+ ...+...+.. +++++.|.+. ++ ..
T Consensus 247 ~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~GG~~e---~t~~~~~v~~~~gVti~Gv~n--~P---~~ 318 (509)
T PRK09424 247 KEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAENGGNCE---LTVPGEVVVTDNGVTIIGYTD--LP---SR 318 (509)
T ss_pred CCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCCCCCcc---cccCccceEeECCEEEEEeCC--Cc---hh
Confidence 4799999999852 3 48999999999999999874322111 1112223344 7888888652 22 12
Q ss_pred HHHHHHHHHHcCceeee
Q 035717 76 FLEMIIPHIKWAKIVYI 92 (125)
Q Consensus 76 ~~~~~~~l~~~g~i~~~ 92 (125)
...+..+++.++.+...
T Consensus 319 ~p~~As~lla~~~i~l~ 335 (509)
T PRK09424 319 LPTQSSQLYGTNLVNLL 335 (509)
T ss_pred HHHHHHHHHHhCCccHH
Confidence 23357778887776643
No 132
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=92.87 E-value=0.13 Score=31.41 Aligned_cols=35 Identities=20% Similarity=0.305 Sum_probs=26.7
Q ss_pred ceeeEEEeCCch-HHHHHHHHhhccCCEEEEEcccc
Q 035717 4 EGIDIYFENVGG-KMLDAVLINMKIGGQIAVCGMIS 38 (125)
Q Consensus 4 ~g~Dvv~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~ 38 (125)
.|+|+|+||+|. .+.+.+...++.+.+-|.++..+
T Consensus 86 ~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~ 121 (149)
T smart00846 86 LGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPA 121 (149)
T ss_pred cCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCC
Confidence 379999999986 45556667888888888887643
No 133
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=92.43 E-value=0.099 Score=32.00 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=26.5
Q ss_pred eeeEEEeCCch-HHHHHHHHhhccCCEEEEEcccc
Q 035717 5 GIDIYFENVGG-KMLDAVLINMKIGGQIAVCGMIS 38 (125)
Q Consensus 5 g~Dvv~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~ 38 (125)
|+|+|+||+|. .....+..+++.+.+-|.++..+
T Consensus 88 gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~ 122 (151)
T PF00044_consen 88 GVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPS 122 (151)
T ss_dssp TESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-
T ss_pred cccEEEeccccceecccccccccccccceeecccc
Confidence 89999999995 45666667888888888887654
No 134
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=89.36 E-value=0.49 Score=32.72 Aligned_cols=34 Identities=12% Similarity=0.163 Sum_probs=28.2
Q ss_pred ceeeEEEeCCchH-HHHHHHHhhccCCEEEEEccc
Q 035717 4 EGIDIYFENVGGK-MLDAVLINMKIGGQIAVCGMI 37 (125)
Q Consensus 4 ~g~Dvv~d~~g~~-~~~~~~~~l~~~G~~v~~g~~ 37 (125)
.|+|+||+|+|.. +.+.+..+++.|++.|.++..
T Consensus 88 ~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP 122 (325)
T TIGR01532 88 LGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHP 122 (325)
T ss_pred cCCCEEEEccchhccHHHHHHHHHcCCeEEEecCC
Confidence 4899999999975 467788889988899888764
No 135
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=89.13 E-value=0.36 Score=33.76 Aligned_cols=33 Identities=24% Similarity=0.156 Sum_probs=25.7
Q ss_pred eeeEEEeCCch-HHHHHHHHhhccCCEEEEEccc
Q 035717 5 GIDIYFENVGG-KMLDAVLINMKIGGQIAVCGMI 37 (125)
Q Consensus 5 g~Dvv~d~~g~-~~~~~~~~~l~~~G~~v~~g~~ 37 (125)
|+|+|+||+|. .+.+.+...|+.|.+-|.+..+
T Consensus 104 gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP 137 (361)
T PTZ00434 104 GVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAP 137 (361)
T ss_pred CCCEEEeCceeeccHHHHhhhhhcCCCEEEECCC
Confidence 89999999994 5667788888888766666443
No 136
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=86.43 E-value=1.2 Score=31.72 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=27.5
Q ss_pred ceeeEEEeCCchH-HHHHHHHhhccCCEEEEEccc
Q 035717 4 EGIDIYFENVGGK-MLDAVLINMKIGGQIAVCGMI 37 (125)
Q Consensus 4 ~g~Dvv~d~~g~~-~~~~~~~~l~~~G~~v~~g~~ 37 (125)
.|+|+||+|+|.. +-+.+-..++.|.+.|.+...
T Consensus 149 ~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap 183 (395)
T PLN03096 149 LGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 183 (395)
T ss_pred cCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCC
Confidence 4899999999964 466777888888888888764
No 137
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=86.25 E-value=1.1 Score=31.13 Aligned_cols=35 Identities=26% Similarity=0.223 Sum_probs=27.4
Q ss_pred ceeeEEEeCCchH-HHHHHHHhhccCCEEEEEcccc
Q 035717 4 EGIDIYFENVGGK-MLDAVLINMKIGGQIAVCGMIS 38 (125)
Q Consensus 4 ~g~Dvv~d~~g~~-~~~~~~~~l~~~G~~v~~g~~~ 38 (125)
.|+|+||+|+|.. +.+.+-..++.|.+.|.+...+
T Consensus 94 ~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~ 129 (338)
T PLN02358 94 AGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPS 129 (338)
T ss_pred cCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCC
Confidence 4899999999975 4667777888888888876543
No 138
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=85.41 E-value=2 Score=26.92 Aligned_cols=19 Identities=26% Similarity=0.148 Sum_probs=16.0
Q ss_pred HHHHHHHhhccCCEEEEEc
Q 035717 17 MLDAVLINMKIGGQIAVCG 35 (125)
Q Consensus 17 ~~~~~~~~l~~~G~~v~~g 35 (125)
.+..+.++|+++|+++...
T Consensus 128 ~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 128 ALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred HHHHHHHHccCCCEEEEEE
Confidence 5678899999999998864
No 139
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=84.99 E-value=1.6 Score=30.34 Aligned_cols=33 Identities=18% Similarity=0.232 Sum_probs=26.7
Q ss_pred eeeEEEeCCchH-HHHHHHHhhccCCEEEEEccc
Q 035717 5 GIDIYFENVGGK-MLDAVLINMKIGGQIAVCGMI 37 (125)
Q Consensus 5 g~Dvv~d~~g~~-~~~~~~~~l~~~G~~v~~g~~ 37 (125)
|+|+||+|+|.. +-+.+...++.|.+.|.+...
T Consensus 90 gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap 123 (327)
T TIGR01534 90 GVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAP 123 (327)
T ss_pred CCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCC
Confidence 899999999975 456677788888888888754
No 140
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=84.89 E-value=1.4 Score=30.55 Aligned_cols=33 Identities=18% Similarity=0.161 Sum_probs=26.6
Q ss_pred eeeEEEeCCchH-HHHHHHHhhccCCEEEEEccc
Q 035717 5 GIDIYFENVGGK-MLDAVLINMKIGGQIAVCGMI 37 (125)
Q Consensus 5 g~Dvv~d~~g~~-~~~~~~~~l~~~G~~v~~g~~ 37 (125)
|+|+||+|+|.. +-+.+-..++.|.+.|.+...
T Consensus 89 gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap 122 (331)
T PRK15425 89 GVDVVAEATGLFLTDETARKHITAGAKKVVMTGP 122 (331)
T ss_pred CCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCC
Confidence 899999999975 456677788888888888654
No 141
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=84.13 E-value=1.8 Score=30.13 Aligned_cols=34 Identities=12% Similarity=0.161 Sum_probs=26.5
Q ss_pred ceeeEEEeCCchH-HHHHHHHhhccCCEEEEEccc
Q 035717 4 EGIDIYFENVGGK-MLDAVLINMKIGGQIAVCGMI 37 (125)
Q Consensus 4 ~g~Dvv~d~~g~~-~~~~~~~~l~~~G~~v~~g~~ 37 (125)
.|+|+||+|+|.. +-+.+-..++.|.+.|.+...
T Consensus 90 ~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap 124 (336)
T PRK13535 90 LGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHP 124 (336)
T ss_pred cCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCC
Confidence 4899999999975 455666788888788887654
No 142
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=83.50 E-value=1.7 Score=30.26 Aligned_cols=33 Identities=18% Similarity=0.145 Sum_probs=26.4
Q ss_pred eeeEEEeCCchH-HHHHHHHhhccCCEEEEEccc
Q 035717 5 GIDIYFENVGGK-MLDAVLINMKIGGQIAVCGMI 37 (125)
Q Consensus 5 g~Dvv~d~~g~~-~~~~~~~~l~~~G~~v~~g~~ 37 (125)
|+|+||+|+|.. +.+.+-..+..|.+.|.+...
T Consensus 88 gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap 121 (334)
T PRK08955 88 GCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAP 121 (334)
T ss_pred CCCEEEEccchhhcHHHHHHHHHCCCEEEEECCC
Confidence 899999999975 456677788888888888654
No 143
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=83.46 E-value=1.8 Score=30.15 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=26.0
Q ss_pred eeeEEEeCCchH-HHHHHHHhhccCCEEEEEccc
Q 035717 5 GIDIYFENVGGK-MLDAVLINMKIGGQIAVCGMI 37 (125)
Q Consensus 5 g~Dvv~d~~g~~-~~~~~~~~l~~~G~~v~~g~~ 37 (125)
|+|+||+|+|.. +.+.+-..++.|.+.|.+...
T Consensus 90 gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap 123 (337)
T PRK07403 90 GIDLIIESTGVFVTKEGASKHIQAGAKKVLITAP 123 (337)
T ss_pred CCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCC
Confidence 899999999964 455667788888888888654
No 144
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=82.70 E-value=2.8 Score=26.57 Aligned_cols=30 Identities=30% Similarity=0.459 Sum_probs=21.8
Q ss_pred ceeeEEEeCCch----HHHHHHHHhhccCCEEEE
Q 035717 4 EGIDIYFENVGG----KMLDAVLINMKIGGQIAV 33 (125)
Q Consensus 4 ~g~Dvv~d~~g~----~~~~~~~~~l~~~G~~v~ 33 (125)
..+|.||...+. ..+..+.++|+++|+++.
T Consensus 110 ~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 110 EKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred CCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEE
Confidence 458888875442 257778888999999875
No 145
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=82.49 E-value=1.7 Score=30.26 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=26.3
Q ss_pred ceeeEEEeCCchH-HHHHHHHhhccCCEEEEEccc
Q 035717 4 EGIDIYFENVGGK-MLDAVLINMKIGGQIAVCGMI 37 (125)
Q Consensus 4 ~g~Dvv~d~~g~~-~~~~~~~~l~~~G~~v~~g~~ 37 (125)
.|+|+||+|+|.. +-+.+-..++.|.+.|.+...
T Consensus 89 ~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSap 123 (337)
T PTZ00023 89 NGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAP 123 (337)
T ss_pred cCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCCC
Confidence 4899999999975 455666788888888888653
No 146
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=82.37 E-value=2.1 Score=29.92 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=26.2
Q ss_pred ceeeEEEeCCchH-HHHHHHHhhccCCEEEEEccc
Q 035717 4 EGIDIYFENVGGK-MLDAVLINMKIGGQIAVCGMI 37 (125)
Q Consensus 4 ~g~Dvv~d~~g~~-~~~~~~~~l~~~G~~v~~g~~ 37 (125)
.|+|+||+|+|.. +.+.+-..++.|.+.|.+...
T Consensus 88 ~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap 122 (343)
T PRK07729 88 LGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAP 122 (343)
T ss_pred cCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCC
Confidence 4899999999965 456666778878888888654
No 147
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=81.36 E-value=2.6 Score=30.47 Aligned_cols=34 Identities=21% Similarity=0.149 Sum_probs=27.1
Q ss_pred ceeeEEEeCCchH-HHHHHHHhhccCCEEEEEccc
Q 035717 4 EGIDIYFENVGGK-MLDAVLINMKIGGQIAVCGMI 37 (125)
Q Consensus 4 ~g~Dvv~d~~g~~-~~~~~~~~l~~~G~~v~~g~~ 37 (125)
.|+|+||+|+|.. +.+.+-..++.|.+.|.+...
T Consensus 164 ~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iSAP 198 (442)
T PLN02237 164 LGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 198 (442)
T ss_pred cCCCEEEEccChhhhHHHHHHHHhCCCEEEEECCC
Confidence 4899999999964 466777788888888888743
No 148
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=81.29 E-value=2 Score=28.75 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=24.7
Q ss_pred CceeeEEEeCCchH-----------HHHHHHHhhccCCEEEEEcccc
Q 035717 3 PEGIDIYFENVGGK-----------MLDAVLINMKIGGQIAVCGMIS 38 (125)
Q Consensus 3 ~~g~Dvv~d~~g~~-----------~~~~~~~~l~~~G~~v~~g~~~ 38 (125)
|..+|+|+-+..-+ .+....++|+|||.++.+|...
T Consensus 156 p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~ 202 (256)
T PF01234_consen 156 PPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLG 202 (256)
T ss_dssp -SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred ccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence 44699987644322 3456667899999999998743
No 149
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=80.21 E-value=1.3 Score=23.75 Aligned_cols=30 Identities=23% Similarity=0.407 Sum_probs=21.3
Q ss_pred ceeeEEEeCCch-------HHHHHHHHhhccCCEEEE
Q 035717 4 EGIDIYFENVGG-------KMLDAVLINMKIGGQIAV 33 (125)
Q Consensus 4 ~g~Dvv~d~~g~-------~~~~~~~~~l~~~G~~v~ 33 (125)
+-+|+|+....- ..+..+.+.|+|+|+++.
T Consensus 59 ~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 59 NSFDVVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp T-EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 468888754332 247889999999999874
No 150
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=79.55 E-value=3.8 Score=26.56 Aligned_cols=33 Identities=9% Similarity=0.183 Sum_probs=25.1
Q ss_pred eeeEEEeCCc---------hHHHHHHHHhhccCCEEEEEccc
Q 035717 5 GIDIYFENVG---------GKMLDAVLINMKIGGQIAVCGMI 37 (125)
Q Consensus 5 g~Dvv~d~~g---------~~~~~~~~~~l~~~G~~v~~g~~ 37 (125)
.+|.|+|+.. ...++...++|+|+|+++.++..
T Consensus 113 ~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 113 PVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred CcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 4799999653 12477888999999998877653
No 151
>PF13065 DUF3928: Protein of unknown function (DUF3928)
Probab=78.75 E-value=7.6 Score=20.74 Aligned_cols=35 Identities=17% Similarity=0.101 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHcCceeeeeecccchhHHHHHHHHHh
Q 035717 73 YPKFLEMIIPHIKWAKIVYIEDTAEGLESALAARVGLF 110 (125)
Q Consensus 73 ~~~~~~~~~~l~~~g~i~~~~~~~~~l~~~~~a~~~~~ 110 (125)
.+++++++.++++-|++... .+.-+++++|++.++
T Consensus 57 ~~kalqeiarlvelgrftyv---hyrn~eie~afeavk 91 (95)
T PF13065_consen 57 QQKALQEIARLVELGRFTYV---HYRNEEIEKAFEAVK 91 (95)
T ss_pred HHHHHHHHHHHHHhcceeEE---EeccHHHHHHHHHHh
Confidence 46789999999999998642 367789999998764
No 152
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=78.50 E-value=2.4 Score=31.32 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=28.5
Q ss_pred ceeeEEEeCC---chH----HHHHHHHhhccCCEEEEEcccc
Q 035717 4 EGIDIYFENV---GGK----MLDAVLINMKIGGQIAVCGMIS 38 (125)
Q Consensus 4 ~g~Dvv~d~~---g~~----~~~~~~~~l~~~G~~v~~g~~~ 38 (125)
+++|++|+|+ |.+ ..+..++.+++++.+|+++...
T Consensus 246 ~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d~ 287 (511)
T TIGR00561 246 KEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAEQ 287 (511)
T ss_pred CCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeCC
Confidence 4799999999 642 3577899999999999997643
No 153
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=77.75 E-value=5.5 Score=27.01 Aligned_cols=34 Identities=18% Similarity=0.312 Sum_probs=25.6
Q ss_pred ceeeEEEeCCchH----HHHHHHHhhccCCEEEEEccc
Q 035717 4 EGIDIYFENVGGK----MLDAVLINMKIGGQIAVCGMI 37 (125)
Q Consensus 4 ~g~Dvv~d~~g~~----~~~~~~~~l~~~G~~v~~g~~ 37 (125)
..+|+|+...... .+....++|+++|+++..|..
T Consensus 224 ~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 224 GKADVIVANILAEVIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred CCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 4789998755433 456778999999999887753
No 154
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=77.70 E-value=3.5 Score=29.73 Aligned_cols=35 Identities=29% Similarity=0.365 Sum_probs=28.2
Q ss_pred ceeeEEEeCCchH-HHH-HHHHhhccCCEEEEEcccc
Q 035717 4 EGIDIYFENVGGK-MLD-AVLINMKIGGQIAVCGMIS 38 (125)
Q Consensus 4 ~g~Dvv~d~~g~~-~~~-~~~~~l~~~G~~v~~g~~~ 38 (125)
.++|+|++++|.. .+. ..+..+++++.++.+|...
T Consensus 266 ~~aDVVI~aTG~~~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 266 ELGDIFVTATGNKDVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred hCCCEEEECCCCHHHHHHHHHhcCCCCCEEEEcCCCC
Confidence 3689999999965 354 6889999999999998643
No 155
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=77.09 E-value=5.2 Score=26.45 Aligned_cols=33 Identities=18% Similarity=0.393 Sum_probs=25.1
Q ss_pred eeeEEEeCCchH----HHHHHHHhhccCCEEEEEccc
Q 035717 5 GIDIYFENVGGK----MLDAVLINMKIGGQIAVCGMI 37 (125)
Q Consensus 5 g~Dvv~d~~g~~----~~~~~~~~l~~~G~~v~~g~~ 37 (125)
.+|+|+.+.... .++...++|+++|+++..|..
T Consensus 179 ~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 179 KADVIVANILANPLLELAPDLARLLKPGGRLILSGIL 215 (250)
T ss_pred CcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 389998766543 356788899999999987653
No 156
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=76.59 E-value=3.5 Score=27.09 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=24.5
Q ss_pred eeeEEEeCCchH-------HHHHHHHhhccCCEEEEEccc
Q 035717 5 GIDIYFENVGGK-------MLDAVLINMKIGGQIAVCGMI 37 (125)
Q Consensus 5 g~Dvv~d~~g~~-------~~~~~~~~l~~~G~~v~~g~~ 37 (125)
-+|+|.-+.|-. .+.+..+.|+|||+++.+-..
T Consensus 116 sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~ 155 (233)
T PF01209_consen 116 SFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFS 155 (233)
T ss_dssp -EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeecc
Confidence 488888666521 578999999999999988653
No 157
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=76.34 E-value=6 Score=24.21 Aligned_cols=32 Identities=13% Similarity=0.231 Sum_probs=23.7
Q ss_pred eeeEEEeCCchH-------HHHHHHHhhccCCEEEEEcc
Q 035717 5 GIDIYFENVGGK-------MLDAVLINMKIGGQIAVCGM 36 (125)
Q Consensus 5 g~Dvv~d~~g~~-------~~~~~~~~l~~~G~~v~~g~ 36 (125)
.+|+|+-..+-. .++...++|+|+|+++.+-.
T Consensus 44 ~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~ 82 (160)
T PLN02232 44 EFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDF 82 (160)
T ss_pred CeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 588887544322 47889999999999987743
No 158
>PRK04266 fibrillarin; Provisional
Probab=75.03 E-value=5.7 Score=26.00 Aligned_cols=31 Identities=23% Similarity=0.467 Sum_probs=22.2
Q ss_pred ceeeEEEeCCchH-----HHHHHHHhhccCCEEEEE
Q 035717 4 EGIDIYFENVGGK-----MLDAVLINMKIGGQIAVC 34 (125)
Q Consensus 4 ~g~Dvv~d~~g~~-----~~~~~~~~l~~~G~~v~~ 34 (125)
..+|+|+--...+ .+..+.+.|+|+|+++..
T Consensus 140 ~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 140 EKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred ccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 4589988433321 257788899999999874
No 159
>PLN02494 adenosylhomocysteinase
Probab=74.82 E-value=2.9 Score=30.54 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=28.3
Q ss_pred eeeEEEeCCchHH--HHHHHHhhccCCEEEEEccc
Q 035717 5 GIDIYFENVGGKM--LDAVLINMKIGGQIAVCGMI 37 (125)
Q Consensus 5 g~Dvv~d~~g~~~--~~~~~~~l~~~G~~v~~g~~ 37 (125)
..|++++++|... ....++.++++|.++.+|..
T Consensus 309 ~ADVVI~tTGt~~vI~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 309 EADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred hCCEEEECCCCccchHHHHHhcCCCCCEEEEcCCC
Confidence 5799999999753 47899999999999999873
No 160
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=74.22 E-value=4.5 Score=27.08 Aligned_cols=31 Identities=13% Similarity=0.118 Sum_probs=24.5
Q ss_pred eeeEEEeCCchHHHHHHHHhhccCCEEEEEc
Q 035717 5 GIDIYFENVGGKMLDAVLINMKIGGQIAVCG 35 (125)
Q Consensus 5 g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g 35 (125)
.+|+|+.......+....+.|+|+|+++.+.
T Consensus 151 sfD~I~~~~~~~~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 151 SLDAIIRIYAPCKAEELARVVKPGGIVITVT 181 (272)
T ss_pred ceeEEEEecCCCCHHHHHhhccCCCEEEEEe
Confidence 5899987555445678889999999998763
No 161
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=73.26 E-value=7.3 Score=25.09 Aligned_cols=18 Identities=28% Similarity=0.261 Sum_probs=15.0
Q ss_pred HHHHHHHhhccCCEEEEE
Q 035717 17 MLDAVLINMKIGGQIAVC 34 (125)
Q Consensus 17 ~~~~~~~~l~~~G~~v~~ 34 (125)
.++.+.++|+++|+++..
T Consensus 147 ~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 147 ALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred HHHHHHHHcCCCCEEEEE
Confidence 467888899999999874
No 162
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=72.81 E-value=6.3 Score=28.31 Aligned_cols=33 Identities=30% Similarity=0.341 Sum_probs=27.1
Q ss_pred eeeEEEeCCchHH-HH-HHHHhhccCCEEEEEccc
Q 035717 5 GIDIYFENVGGKM-LD-AVLINMKIGGQIAVCGMI 37 (125)
Q Consensus 5 g~Dvv~d~~g~~~-~~-~~~~~l~~~G~~v~~g~~ 37 (125)
+.|++|+++|... +. ..+..+++++.++..|..
T Consensus 250 ~aDVVItaTG~~~vI~~~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 250 IGDIFITATGNKDVIRGEHFENMKDGAIVANIGHF 284 (406)
T ss_pred cCCEEEECCCCHHHHHHHHHhcCCCCcEEEEECCC
Confidence 5799999999754 44 588999999999998864
No 163
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=71.01 E-value=7.3 Score=25.08 Aligned_cols=31 Identities=13% Similarity=0.240 Sum_probs=22.4
Q ss_pred ceeeEEEeCCc-hHHHHHHHHhhccCCEEEEE
Q 035717 4 EGIDIYFENVG-GKMLDAVLINMKIGGQIAVC 34 (125)
Q Consensus 4 ~g~Dvv~d~~g-~~~~~~~~~~l~~~G~~v~~ 34 (125)
..+|+|+-..+ .......++.|+++|+++..
T Consensus 144 ~~fD~I~~~~~~~~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 144 APYDRIYVTAAGPDIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred CCcCEEEECCCcccchHHHHHhhCCCcEEEEE
Confidence 35899875433 33456788899999998774
No 164
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=70.98 E-value=4.3 Score=28.25 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=23.0
Q ss_pred eeeEEEeCCchH-HHHHHHHhhccC-CEEEEEcccc
Q 035717 5 GIDIYFENVGGK-MLDAVLINMKIG-GQIAVCGMIS 38 (125)
Q Consensus 5 g~Dvv~d~~g~~-~~~~~~~~l~~~-G~~v~~g~~~ 38 (125)
|+|+|+||+|.- .-+.+-+.+..+ .+-|.++..+
T Consensus 89 gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~ 124 (335)
T COG0057 89 GVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPG 124 (335)
T ss_pred CccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCC
Confidence 789999999953 345555577675 5666665543
No 165
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=70.34 E-value=4 Score=28.56 Aligned_cols=26 Identities=15% Similarity=0.126 Sum_probs=20.2
Q ss_pred eeeEEEeCCchH-HHHHHHHhhccCCE
Q 035717 5 GIDIYFENVGGK-MLDAVLINMKIGGQ 30 (125)
Q Consensus 5 g~Dvv~d~~g~~-~~~~~~~~l~~~G~ 30 (125)
|+|+||+|+|.. +...++..++.|.+
T Consensus 92 gvDiVie~TG~f~~~~~a~~hl~~Gak 118 (342)
T PTZ00353 92 GVQYVVECTGLYSTRSRCWGHVTGGAK 118 (342)
T ss_pred CCCEEEEcccccccHhhhhhhhhcCCC
Confidence 899999999964 46777788876543
No 166
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=70.01 E-value=8.3 Score=24.46 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=23.1
Q ss_pred ceeeEEEeCCc-h--HHHHHHHHhhccCCEEEEE
Q 035717 4 EGIDIYFENVG-G--KMLDAVLINMKIGGQIAVC 34 (125)
Q Consensus 4 ~g~Dvv~d~~g-~--~~~~~~~~~l~~~G~~v~~ 34 (125)
+.+|+|+-... . ..+..+.++|+++|+++.+
T Consensus 111 ~~fDlV~~~~~~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 111 EKFDVVTSRAVASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred CCccEEEEccccCHHHHHHHHHHhcCCCeEEEEE
Confidence 35888885322 2 3577889999999999887
No 167
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=69.97 E-value=7.7 Score=24.76 Aligned_cols=32 Identities=28% Similarity=0.498 Sum_probs=24.1
Q ss_pred eeeEEEeCCch---HHHHHHHHhhccCCEEEEEcc
Q 035717 5 GIDIYFENVGG---KMLDAVLINMKIGGQIAVCGM 36 (125)
Q Consensus 5 g~Dvv~d~~g~---~~~~~~~~~l~~~G~~v~~g~ 36 (125)
.+|.+|=--|+ ..++.++..|+++||+|.-..
T Consensus 102 ~~daiFIGGg~~i~~ile~~~~~l~~ggrlV~nai 136 (187)
T COG2242 102 SPDAIFIGGGGNIEEILEAAWERLKPGGRLVANAI 136 (187)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHcCcCCeEEEEee
Confidence 47888843332 258999999999999998654
No 168
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=68.34 E-value=9.9 Score=26.40 Aligned_cols=30 Identities=27% Similarity=0.449 Sum_probs=23.5
Q ss_pred eeeEEEeCCchH-HHHHHHHhhccCCEEEEE
Q 035717 5 GIDIYFENVGGK-MLDAVLINMKIGGQIAVC 34 (125)
Q Consensus 5 g~Dvv~d~~g~~-~~~~~~~~l~~~G~~v~~ 34 (125)
.+|+|+.+.|.. .....++.|+++|+++..
T Consensus 149 ~fD~Ii~~~g~~~ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 149 PYDVIFVTVGVDEVPETWFTQLKEGGRVIVP 179 (322)
T ss_pred CccEEEECCchHHhHHHHHHhcCCCCEEEEE
Confidence 589999887754 345778899999998763
No 169
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=67.39 E-value=9.2 Score=24.43 Aligned_cols=31 Identities=16% Similarity=0.273 Sum_probs=22.4
Q ss_pred ceeeEEEeCCch-HHHHHHHHhhccCCEEEEE
Q 035717 4 EGIDIYFENVGG-KMLDAVLINMKIGGQIAVC 34 (125)
Q Consensus 4 ~g~Dvv~d~~g~-~~~~~~~~~l~~~G~~v~~ 34 (125)
..+|+|+-+.+. ...+..++.|+++|+++..
T Consensus 141 ~~fD~Ii~~~~~~~~~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 141 APFDAIIVTAAASTIPSALVRQLKDGGVLVIP 172 (205)
T ss_pred CCccEEEEccCcchhhHHHHHhcCcCcEEEEE
Confidence 368998865443 3446778999999998763
No 170
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=67.30 E-value=13 Score=23.60 Aligned_cols=32 Identities=19% Similarity=0.371 Sum_probs=22.0
Q ss_pred ceeeEEEeCC-----ch----HHHHHHHHhhccCCEEEEEc
Q 035717 4 EGIDIYFENV-----GG----KMLDAVLINMKIGGQIAVCG 35 (125)
Q Consensus 4 ~g~Dvv~d~~-----g~----~~~~~~~~~l~~~G~~v~~g 35 (125)
..+|+|+.+. .. ..+....++|+|+|.++.+.
T Consensus 93 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 93 EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 4589887532 11 25678888999999966553
No 171
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=66.97 E-value=24 Score=25.19 Aligned_cols=34 Identities=15% Similarity=0.224 Sum_probs=27.3
Q ss_pred CceeeEEEeCCchHH--HHHHHHhhccCCEEEEEcc
Q 035717 3 PEGIDIYFENVGGKM--LDAVLINMKIGGQIAVCGM 36 (125)
Q Consensus 3 ~~g~Dvv~d~~g~~~--~~~~~~~l~~~G~~v~~g~ 36 (125)
...+|+|+|++|.+. ..-++..+..+-++|++-.
T Consensus 99 ~~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlVMmNV 134 (438)
T COG4091 99 NDLIDVIIDATGVPEVGAKIALEAILHGKHLVMMNV 134 (438)
T ss_pred CCcceEEEEcCCCcchhhHhHHHHHhcCCeEEEEEe
Confidence 457999999999763 4678888998889988754
No 172
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=65.92 E-value=6.9 Score=28.24 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=22.2
Q ss_pred eeeEEEeCCchH-HHHHHHHhhccCCEEEEEc
Q 035717 5 GIDIYFENVGGK-MLDAVLINMKIGGQIAVCG 35 (125)
Q Consensus 5 g~Dvv~d~~g~~-~~~~~~~~l~~~G~~v~~g 35 (125)
|+|+||+|+|.. +.+.+...++.|.+-|.+.
T Consensus 174 gVDiVlesTG~f~s~e~a~~hl~aGAkkVVId 205 (421)
T PLN02272 174 GAEYVVESSGVFTTVEKASAHLKGGAKKVVIS 205 (421)
T ss_pred CCCEEEEcCchhccHHHHHHHhhCCCCEEEEC
Confidence 799999999974 4556677787776444443
No 173
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=65.87 E-value=11 Score=23.62 Aligned_cols=31 Identities=23% Similarity=0.410 Sum_probs=22.1
Q ss_pred ceeeEEEeCCc-h---HHHHHHHHhhccCCEEEEE
Q 035717 4 EGIDIYFENVG-G---KMLDAVLINMKIGGQIAVC 34 (125)
Q Consensus 4 ~g~Dvv~d~~g-~---~~~~~~~~~l~~~G~~v~~ 34 (125)
..+|+|+.... + ..+..+.+.|+++|+++..
T Consensus 96 ~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~ 130 (187)
T PRK08287 96 GKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLT 130 (187)
T ss_pred cCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEE
Confidence 45888885332 1 2567888999999998764
No 174
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=65.82 E-value=14 Score=23.47 Aligned_cols=33 Identities=15% Similarity=0.115 Sum_probs=22.7
Q ss_pred ceeeEEEeCCch---------HHHHHHHHhhccCCEEEEEcc
Q 035717 4 EGIDIYFENVGG---------KMLDAVLINMKIGGQIAVCGM 36 (125)
Q Consensus 4 ~g~Dvv~d~~g~---------~~~~~~~~~l~~~G~~v~~g~ 36 (125)
..+|+|+.+... ..+....++|+++|.++.+..
T Consensus 94 ~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~ 135 (197)
T PRK11207 94 GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAA 135 (197)
T ss_pred CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 458999864331 246677889999999765543
No 175
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=64.98 E-value=13 Score=25.45 Aligned_cols=34 Identities=24% Similarity=0.204 Sum_probs=27.0
Q ss_pred ceeeEEEeCCchHH-HHHHHHhhccCCEEEEEccc
Q 035717 4 EGIDIYFENVGGKM-LDAVLINMKIGGQIAVCGMI 37 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~-~~~~~~~l~~~G~~v~~g~~ 37 (125)
.++|+||+++.... ....++.+++++.++.++..
T Consensus 209 ~~aDiVI~t~p~~~i~~~~l~~~~~g~vIIDla~~ 243 (296)
T PRK08306 209 GKIDIIFNTIPALVLTKEVLSKMPPEALIIDLASK 243 (296)
T ss_pred CCCCEEEECCChhhhhHHHHHcCCCCcEEEEEccC
Confidence 36899999987653 45677889999999999763
No 176
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=64.73 E-value=13 Score=24.19 Aligned_cols=32 Identities=6% Similarity=0.221 Sum_probs=23.1
Q ss_pred eeeEEEeCCc---------hHHHHHHHHhhccCCEEEEEcc
Q 035717 5 GIDIYFENVG---------GKMLDAVLINMKIGGQIAVCGM 36 (125)
Q Consensus 5 g~Dvv~d~~g---------~~~~~~~~~~l~~~G~~v~~g~ 36 (125)
.+|.|+|... ...+....++|+|+|+...+..
T Consensus 116 ~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~ 156 (218)
T PRK13255 116 DVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTL 156 (218)
T ss_pred CeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 5799998653 1247788889999998666543
No 177
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=64.61 E-value=9.6 Score=27.11 Aligned_cols=33 Identities=30% Similarity=0.540 Sum_probs=22.6
Q ss_pred CceeeEE-EeCCchH--HHHHHHHhhccCCEEEEEc
Q 035717 3 PEGIDIY-FENVGGK--MLDAVLINMKIGGQIAVCG 35 (125)
Q Consensus 3 ~~g~Dvv-~d~~g~~--~~~~~~~~l~~~G~~v~~g 35 (125)
...+|+| +|+.|.+ .++.++++++.+|-+..-+
T Consensus 119 ~~~fD~IDlDPfGSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 119 QERFDVIDLDPFGSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp TT-EEEEEE--SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred cccCCEEEeCCCCCccHhHHHHHHHhhcCCEEEEec
Confidence 4578998 8999975 5899999999998665543
No 178
>PRK04457 spermidine synthase; Provisional
Probab=64.53 E-value=14 Score=24.70 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=22.9
Q ss_pred CceeeEEE-eCC---c-------hHHHHHHHHhhccCCEEEEE
Q 035717 3 PEGIDIYF-ENV---G-------GKMLDAVLINMKIGGQIAVC 34 (125)
Q Consensus 3 ~~g~Dvv~-d~~---g-------~~~~~~~~~~l~~~G~~v~~ 34 (125)
+..+|+|+ |.. + .+.++.+.++|+++|.++..
T Consensus 134 ~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 134 RHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred CCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 45688876 332 1 24578899999999999873
No 179
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=64.29 E-value=11 Score=21.89 Aligned_cols=33 Identities=12% Similarity=0.083 Sum_probs=21.8
Q ss_pred ceeeEEEeCCchHHHHHHHH-hhccCCEEEEEcc
Q 035717 4 EGIDIYFENVGGKMLDAVLI-NMKIGGQIAVCGM 36 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~~~~~~~-~l~~~G~~v~~g~ 36 (125)
.++|+||.|++......... +++.+-+++..+.
T Consensus 65 ~~~Dvvf~a~~~~~~~~~~~~~~~~g~~ViD~s~ 98 (121)
T PF01118_consen 65 SDVDVVFLALPHGASKELAPKLLKAGIKVIDLSG 98 (121)
T ss_dssp TTESEEEE-SCHHHHHHHHHHHHHTTSEEEESSS
T ss_pred hcCCEEEecCchhHHHHHHHHHhhCCcEEEeCCH
Confidence 47899999999875444444 4555667777654
No 180
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=64.09 E-value=15 Score=24.70 Aligned_cols=33 Identities=9% Similarity=0.244 Sum_probs=22.8
Q ss_pred CceeeEEE-eCC---c-------hHHHHHHHHhhccCCEEEEEc
Q 035717 3 PEGIDIYF-ENV---G-------GKMLDAVLINMKIGGQIAVCG 35 (125)
Q Consensus 3 ~~g~Dvv~-d~~---g-------~~~~~~~~~~l~~~G~~v~~g 35 (125)
++.+|+|+ |+. + .+.++.+.+.|+++|.++...
T Consensus 143 ~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 143 ENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred CCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 34688876 332 1 124678889999999998763
No 181
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=64.05 E-value=10 Score=21.72 Aligned_cols=30 Identities=13% Similarity=0.213 Sum_probs=17.4
Q ss_pred eeeEEEeCCchHHHH-HHHHhhccCCEEEEE
Q 035717 5 GIDIYFENVGGKMLD-AVLINMKIGGQIAVC 34 (125)
Q Consensus 5 g~Dvv~d~~g~~~~~-~~~~~l~~~G~~v~~ 34 (125)
..|+|+||++.+... ...++|+.+=.+|..
T Consensus 59 ~~dvvVE~t~~~~~~~~~~~~L~~G~~VVt~ 89 (117)
T PF03447_consen 59 DIDVVVECTSSEAVAEYYEKALERGKHVVTA 89 (117)
T ss_dssp T-SEEEE-SSCHHHHHHHHHHHHTTCEEEES
T ss_pred CCCEEEECCCchHHHHHHHHHHHCCCeEEEE
Confidence 489999997766544 455566655555543
No 182
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=63.62 E-value=7.9 Score=26.21 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=18.4
Q ss_pred HHHHHHHhhccCCEEEEEccc
Q 035717 17 MLDAVLINMKIGGQIAVCGMI 37 (125)
Q Consensus 17 ~~~~~~~~l~~~G~~v~~g~~ 37 (125)
.+.++.+.|+|||||.++-.+
T Consensus 196 ~l~EAYRVLKpGGrf~cLeFs 216 (296)
T KOG1540|consen 196 ALREAYRVLKPGGRFSCLEFS 216 (296)
T ss_pred HHHHHHHhcCCCcEEEEEEcc
Confidence 588999999999999988664
No 183
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=63.39 E-value=34 Score=24.08 Aligned_cols=39 Identities=13% Similarity=-0.014 Sum_probs=33.2
Q ss_pred chHHHHHHHHHHHHcCceeeeeecccchhHHHHHHHHHh
Q 035717 72 LYPKFLEMIIPHIKWAKIVYIEDTAEGLESALAARVGLF 110 (125)
Q Consensus 72 ~~~~~~~~~~~l~~~g~i~~~~~~~~~l~~~~~a~~~~~ 110 (125)
+..+.+..+.+++++|+++..=...++-+++.+|+....
T Consensus 142 piee~m~aL~~lve~Gki~yiGlSe~sa~~I~~a~~~~~ 180 (336)
T KOG1575|consen 142 PIEETMRALTDLVEQGKIRYWGLSEWSAEEIREAHAVAP 180 (336)
T ss_pred CHHHHHHHHHHHHhcCceEEEEeccCCHHHHHHHHHhcC
Confidence 456889999999999999987666689999999998764
No 184
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=63.05 E-value=12 Score=22.35 Aligned_cols=32 Identities=19% Similarity=0.224 Sum_probs=23.1
Q ss_pred ceeeEEEeCCch-------HHHHHHHHhhccCCEEEEEc
Q 035717 4 EGIDIYFENVGG-------KMLDAVLINMKIGGQIAVCG 35 (125)
Q Consensus 4 ~g~Dvv~d~~g~-------~~~~~~~~~l~~~G~~v~~g 35 (125)
+.+|+|+-+..- ..+....++|+|+|.++..-
T Consensus 77 ~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~ 115 (161)
T PF13489_consen 77 GSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISD 115 (161)
T ss_dssp SSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEE
T ss_pred cchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEE
Confidence 468888753321 25788889999999988763
No 185
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=62.54 E-value=13 Score=24.72 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=24.7
Q ss_pred eeeEEEeCCch-------HHHHHHHHhhccCCEEEEEccc
Q 035717 5 GIDIYFENVGG-------KMLDAVLINMKIGGQIAVCGMI 37 (125)
Q Consensus 5 g~Dvv~d~~g~-------~~~~~~~~~l~~~G~~v~~g~~ 37 (125)
.+|+|.-+.|- ..+..+.+.|+|+|+++++-..
T Consensus 119 sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~ 158 (238)
T COG2226 119 SFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFS 158 (238)
T ss_pred ccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcC
Confidence 46777655552 2588999999999999988663
No 186
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=62.53 E-value=6.5 Score=25.53 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=23.3
Q ss_pred eeeEEEeCCchHHH-HHHHHhhccCCEEEEE
Q 035717 5 GIDIYFENVGGKML-DAVLINMKIGGQIAVC 34 (125)
Q Consensus 5 g~Dvv~d~~g~~~~-~~~~~~l~~~G~~v~~ 34 (125)
.+|.|+=+.+.+.. +..++.|+++|++|..
T Consensus 138 PyD~I~Vtaaa~~vP~~Ll~QL~~gGrlv~P 168 (209)
T COG2518 138 PYDRIIVTAAAPEVPEALLDQLKPGGRLVIP 168 (209)
T ss_pred CcCEEEEeeccCCCCHHHHHhcccCCEEEEE
Confidence 58998876666554 5778899999998764
No 187
>PRK00536 speE spermidine synthase; Provisional
Probab=61.98 E-value=16 Score=24.63 Aligned_cols=33 Identities=12% Similarity=0.065 Sum_probs=23.9
Q ss_pred ceeeEEE-eCCc-hHHHHHHHHhhccCCEEEEEcc
Q 035717 4 EGIDIYF-ENVG-GKMLDAVLINMKIGGQIAVCGM 36 (125)
Q Consensus 4 ~g~Dvv~-d~~g-~~~~~~~~~~l~~~G~~v~~g~ 36 (125)
+.+|||+ |+.- .+....+.++|+++|.+|.-+.
T Consensus 138 ~~fDVIIvDs~~~~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 138 KKYDLIICLQEPDIHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred CcCCEEEEcCCCChHHHHHHHHhcCCCcEEEECCC
Confidence 4689965 6443 3457788999999999887543
No 188
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=61.58 E-value=22 Score=18.64 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=20.9
Q ss_pred CceeeEEEeCCch--------HHHHHHHHhhccCCEEEEE
Q 035717 3 PEGIDIYFENVGG--------KMLDAVLINMKIGGQIAVC 34 (125)
Q Consensus 3 ~~g~Dvv~d~~g~--------~~~~~~~~~l~~~G~~v~~ 34 (125)
+.++|+++..... ..+....+.++++|.++..
T Consensus 64 ~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 64 DESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred CCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 3568888764321 2356777788888887653
No 189
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=61.28 E-value=12 Score=25.94 Aligned_cols=22 Identities=41% Similarity=0.505 Sum_probs=19.3
Q ss_pred HHHHHHHhhccCCEEEEEcccc
Q 035717 17 MLDAVLINMKIGGQIAVCGMIS 38 (125)
Q Consensus 17 ~~~~~~~~l~~~G~~v~~g~~~ 38 (125)
.+..+.+.|+++||++.+..-|
T Consensus 226 ~L~~a~~~L~~gGRl~VIsFHS 247 (314)
T COG0275 226 ALEAALDLLKPGGRLAVISFHS 247 (314)
T ss_pred HHHHHHHhhCCCcEEEEEEecc
Confidence 5789999999999999998755
No 190
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=60.66 E-value=10 Score=22.19 Aligned_cols=32 Identities=16% Similarity=0.044 Sum_probs=20.4
Q ss_pred eeeEEEeCCchHHHHHHHHhhccCCEEEEEcc
Q 035717 5 GIDIYFENVGGKMLDAVLINMKIGGQIAVCGM 36 (125)
Q Consensus 5 g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~ 36 (125)
.+|+++|.+..+.....++.+...|.-+.+|-
T Consensus 67 ~~DVvIDfT~p~~~~~~~~~~~~~g~~~ViGT 98 (124)
T PF01113_consen 67 EADVVIDFTNPDAVYDNLEYALKHGVPLVIGT 98 (124)
T ss_dssp H-SEEEEES-HHHHHHHHHHHHHHT-EEEEE-
T ss_pred cCCEEEEcCChHHhHHHHHHHHhCCCCEEEEC
Confidence 38999998876666666666666687777765
No 191
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=60.62 E-value=17 Score=24.20 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=23.5
Q ss_pred eeeEEEeCCc-------hHHHHHHHHhhccCCEEEEEcc
Q 035717 5 GIDIYFENVG-------GKMLDAVLINMKIGGQIAVCGM 36 (125)
Q Consensus 5 g~Dvv~d~~g-------~~~~~~~~~~l~~~G~~v~~g~ 36 (125)
.+|+|+-+.+ ...+....+.|+|+|+++.+-.
T Consensus 145 sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 145 YFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred CEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 4888875332 1257899999999999988743
No 192
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=60.39 E-value=35 Score=20.73 Aligned_cols=67 Identities=15% Similarity=0.073 Sum_probs=36.7
Q ss_pred eeeEEEeCCc----hHHHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeeeecccccchHHHHHHH
Q 035717 5 GIDIYFENVG----GKMLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFLVSDYNHLYPKFLEMI 80 (125)
Q Consensus 5 g~Dvv~d~~g----~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
..|+++= +| +.+++..++..++...++.+|.... . .+..++..+++..+... ..+ -+.+
T Consensus 62 ~aD~vii-TGsTlvN~Ti~~iL~~~~~~~~vil~GpS~~------~---~P~~l~~~Gv~~v~g~~--v~d-----~~~~ 124 (147)
T PF04016_consen 62 WADVVII-TGSTLVNGTIDDILELARNAREVILYGPSAP------L---HPEALFDYGVTYVGGSR--VVD-----PEKV 124 (147)
T ss_dssp G-SEEEE-ECHHCCTTTHHHHHHHTTTSSEEEEESCCGG------S----GGGGCCTT-SEEEEEE--ES------HHHH
T ss_pred cCCEEEE-EeeeeecCCHHHHHHhCccCCeEEEEecCch------h---hHHHHHhCCCCEEEEEE--EeC-----HHHH
Confidence 3577774 33 3478889998887788888886331 1 11123445666555432 111 4555
Q ss_pred HHHHHcCc
Q 035717 81 IPHIKWAK 88 (125)
Q Consensus 81 ~~l~~~g~ 88 (125)
++.+.+|.
T Consensus 125 ~~~i~~Gg 132 (147)
T PF04016_consen 125 LRAISEGG 132 (147)
T ss_dssp HHHHCTTS
T ss_pred HHHHHcCC
Confidence 66666654
No 193
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=60.30 E-value=17 Score=20.58 Aligned_cols=28 Identities=25% Similarity=0.132 Sum_probs=22.4
Q ss_pred ccchhHHHHHHHHHhcCCCcCeEEEEecC
Q 035717 96 AEGLESALAARVGLFSGRNLGKQVAAVAS 124 (125)
Q Consensus 96 ~~~l~~~~~a~~~~~~~~~~gkvvi~~~~ 124 (125)
-|+.+++.+++..+.+ ...+++++++.+
T Consensus 7 HYp~~d~~~~l~~La~-~t~~~~ifTfAP 34 (97)
T PF07109_consen 7 HYPAEDAAQMLAHLAS-RTRGSLIFTFAP 34 (97)
T ss_pred ccCHHHHHHHHHHHHH-hccCcEEEEECC
Confidence 3889999999999876 456789998754
No 194
>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4.99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=59.75 E-value=24 Score=19.10 Aligned_cols=47 Identities=19% Similarity=0.202 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHcCceeeeeecc----cchhHHHHHHHHHhcCC--CcCeEE
Q 035717 73 YPKFLEMIIPHIKWAKIVYIEDTA----EGLESALAARVGLFSGR--NLGKQV 119 (125)
Q Consensus 73 ~~~~~~~~~~l~~~g~i~~~~~~~----~~l~~~~~a~~~~~~~~--~~gkvv 119 (125)
....|..+++++..|+-.+..... .+.+++..+++.+-+-. ..|++|
T Consensus 22 ~~~L~r~LLr~LA~G~PVt~~~LA~a~g~~~e~v~~~L~~~p~tEyD~~GrIV 74 (77)
T PF12324_consen 22 FAWLLRPLLRLLAKGQPVTVEQLAAALGWPVEEVRAALAAMPDTEYDDQGRIV 74 (77)
T ss_dssp HHHHHHHHHHHHTTTS-B-HHHHHHHHT--HHHHHHHHHH-TTSEEETTSEEE
T ss_pred cHHHHHHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHhCCCceEcCCCCee
Confidence 345577888999999876654332 89999999999886542 345654
No 195
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=59.27 E-value=15 Score=25.50 Aligned_cols=30 Identities=17% Similarity=0.168 Sum_probs=22.1
Q ss_pred eeeEEEeCCc-------hHHHHHHHHhhccCCEEEEE
Q 035717 5 GIDIYFENVG-------GKMLDAVLINMKIGGQIAVC 34 (125)
Q Consensus 5 g~Dvv~d~~g-------~~~~~~~~~~l~~~G~~v~~ 34 (125)
.+|+|+-..- ...+....++|+++|+++.-
T Consensus 188 ~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 188 AFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred CcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEE
Confidence 5888884321 13578899999999999864
No 196
>PLN02244 tocopherol O-methyltransferase
Probab=58.51 E-value=21 Score=24.89 Aligned_cols=32 Identities=19% Similarity=0.335 Sum_probs=23.3
Q ss_pred ceeeEEEeCCch-------HHHHHHHHhhccCCEEEEEc
Q 035717 4 EGIDIYFENVGG-------KMLDAVLINMKIGGQIAVCG 35 (125)
Q Consensus 4 ~g~Dvv~d~~g~-------~~~~~~~~~l~~~G~~v~~g 35 (125)
+.+|+|+-.-.. ..+....++|+|+|+++...
T Consensus 185 ~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 185 GQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred CCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 358998753321 25778899999999998764
No 197
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=57.95 E-value=13 Score=26.05 Aligned_cols=33 Identities=21% Similarity=0.180 Sum_probs=20.6
Q ss_pred ceeeEEEeCCchHH-HHHHHHhhccCCEEEEEcc
Q 035717 4 EGIDIYFENVGGKM-LDAVLINMKIGGQIAVCGM 36 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~-~~~~~~~l~~~G~~v~~g~ 36 (125)
.++|+|+||++... .+..-.+++.+-+++.-|.
T Consensus 77 ~~vDVVIdaT~~~~~~e~a~~~~~aGk~VI~~~~ 110 (341)
T PRK04207 77 EKADIVVDATPGGVGAKNKELYEKAGVKAIFQGG 110 (341)
T ss_pred ccCCEEEECCCchhhHHHHHHHHHCCCEEEEcCC
Confidence 46899999999764 4444455555544444443
No 198
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=57.91 E-value=3 Score=29.58 Aligned_cols=34 Identities=9% Similarity=-0.156 Sum_probs=24.4
Q ss_pred ceeeeeecccchhHHHHHHHHHhcCCCcCeEEEEec
Q 035717 88 KIVYIEDTAEGLESALAARVGLFSGRNLGKQVAAVA 123 (125)
Q Consensus 88 ~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~~ 123 (125)
++-......++++++.++++++.... ||++++.+
T Consensus 363 Kvvl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 396 (410)
T cd08238 363 KKLIYTQKPLPLTGIEELADKEPEEP--AAIVLENG 396 (410)
T ss_pred eEEEECCCCCCCchhHhhHhhcCCCh--HHHHHhcC
Confidence 33333334599999999999998765 78777653
No 199
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=57.78 E-value=14 Score=25.45 Aligned_cols=31 Identities=16% Similarity=0.149 Sum_probs=19.6
Q ss_pred ceeeEEEeCCchHH-HHHHHHhhccCCEEEEE
Q 035717 4 EGIDIYFENVGGKM-LDAVLINMKIGGQIAVC 34 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~-~~~~~~~l~~~G~~v~~ 34 (125)
.++|+||++++... .+.+..+++.|-++++.
T Consensus 69 ~dIDiVf~AT~a~~H~e~a~~a~eaGk~VID~ 100 (302)
T PRK08300 69 DDIDIVFDATSAGAHVRHAAKLREAGIRAIDL 100 (302)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHcCCeEEEC
Confidence 46999999999765 44444444444445444
No 200
>PRK14967 putative methyltransferase; Provisional
Probab=57.40 E-value=30 Score=22.35 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=14.0
Q ss_pred HHHHHHhhccCCEEEEE
Q 035717 18 LDAVLINMKIGGQIAVC 34 (125)
Q Consensus 18 ~~~~~~~l~~~G~~v~~ 34 (125)
+..+.+.|+++|+++.+
T Consensus 142 l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 142 CDAAPALLAPGGSLLLV 158 (223)
T ss_pred HHHHHHhcCCCcEEEEE
Confidence 45678899999998876
No 201
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=56.41 E-value=13 Score=25.62 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=18.7
Q ss_pred HHHHHHHhhccCCEEEEEcccc
Q 035717 17 MLDAVLINMKIGGQIAVCGMIS 38 (125)
Q Consensus 17 ~~~~~~~~l~~~G~~v~~g~~~ 38 (125)
.+..+.++|++|||++.+..-|
T Consensus 222 ~L~~~~~~L~~gGrl~VISfHS 243 (305)
T TIGR00006 222 ALQFAPNLLAPGGRLSIISFHS 243 (305)
T ss_pred HHHHHHHHhcCCCEEEEEecCc
Confidence 4678889999999999997754
No 202
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=56.05 E-value=22 Score=25.26 Aligned_cols=39 Identities=13% Similarity=-0.038 Sum_probs=30.2
Q ss_pred chHHHHHHHHHHHHcCceeeeeecccchhHHHHHHHHHhc
Q 035717 72 LYPKFLEMIIPHIKWAKIVYIEDTAEGLESALAARVGLFS 111 (125)
Q Consensus 72 ~~~~~~~~~~~l~~~g~i~~~~~~~~~l~~~~~a~~~~~~ 111 (125)
+.+++.+.++.+.++|.|.+..-. ++++.+.+-++.+++
T Consensus 9 ~n~~~~~~a~~~~~~g~~~~~~yv-IDl~~I~~N~~~l~~ 47 (382)
T cd06811 9 RNPALIEAALTLHQSGAIPPDTYV-IDLDQIEENARLLAE 47 (382)
T ss_pred hCHHHHHHHHHHHHcCCCCCCEEE-ecHHHHHHHHHHHHH
Confidence 456778888888889988886665 788888887777764
No 203
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=55.92 E-value=20 Score=22.85 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=22.0
Q ss_pred ceeeEEEeCCch-HHHHHHHHhhccCCEEEEE
Q 035717 4 EGIDIYFENVGG-KMLDAVLINMKIGGQIAVC 34 (125)
Q Consensus 4 ~g~Dvv~d~~g~-~~~~~~~~~l~~~G~~v~~ 34 (125)
..+|+|+-.... .......+.|+++|+++..
T Consensus 143 ~~fD~I~~~~~~~~~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 143 APFDRILVTAAAPEIPRALLEQLKEGGILVAP 174 (212)
T ss_pred CCcCEEEEccCchhhhHHHHHhcCCCcEEEEE
Confidence 358887754443 3456778899999998764
No 204
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=54.91 E-value=25 Score=24.04 Aligned_cols=34 Identities=15% Similarity=0.270 Sum_probs=24.2
Q ss_pred CCceeeEEE-eCC---ch-------HHHHHHHHhhccCCEEEEEc
Q 035717 2 FPEGIDIYF-ENV---GG-------KMLDAVLINMKIGGQIAVCG 35 (125)
Q Consensus 2 ~~~g~Dvv~-d~~---g~-------~~~~~~~~~l~~~G~~v~~g 35 (125)
+++.+|+|+ |++ |- +.++.+-++|+++|-+|.-+
T Consensus 146 ~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 146 CEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred CCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 345799975 433 32 24788999999999988763
No 205
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=54.52 E-value=22 Score=23.46 Aligned_cols=31 Identities=13% Similarity=0.318 Sum_probs=22.4
Q ss_pred ceeeEEEeCCc-----h--HHHHHHHHhhccCCEEEEE
Q 035717 4 EGIDIYFENVG-----G--KMLDAVLINMKIGGQIAVC 34 (125)
Q Consensus 4 ~g~Dvv~d~~g-----~--~~~~~~~~~l~~~G~~v~~ 34 (125)
+.+|+|+-... . ..+..+.+.|+|+|+++.+
T Consensus 111 ~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 111 TPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred CCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence 46888874322 1 2478889999999999765
No 206
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=54.49 E-value=59 Score=21.30 Aligned_cols=31 Identities=19% Similarity=0.319 Sum_probs=23.5
Q ss_pred eeeEEEeCCch-------HHHHHHHHhhccCCEEEEEc
Q 035717 5 GIDIYFENVGG-------KMLDAVLINMKIGGQIAVCG 35 (125)
Q Consensus 5 g~Dvv~d~~g~-------~~~~~~~~~l~~~G~~v~~g 35 (125)
.+|+|+....- ..+....++|+++|.++...
T Consensus 103 ~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 103 TFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred cEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEe
Confidence 58999865431 25788889999999998764
No 207
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=53.75 E-value=14 Score=23.94 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=23.1
Q ss_pred eeeEEEeCCchHH-HHHHHHhhccCCEEEEE
Q 035717 5 GIDIYFENVGGKM-LDAVLINMKIGGQIAVC 34 (125)
Q Consensus 5 g~Dvv~d~~g~~~-~~~~~~~l~~~G~~v~~ 34 (125)
.+|.|+=+.+.+. -...++.|+++|++|..
T Consensus 141 pfD~I~v~~a~~~ip~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 141 PFDRIIVTAAVPEIPEALLEQLKPGGRLVAP 171 (209)
T ss_dssp SEEEEEESSBBSS--HHHHHTEEEEEEEEEE
T ss_pred CcCEEEEeeccchHHHHHHHhcCCCcEEEEE
Confidence 5899987776543 45788899999998873
No 208
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=53.57 E-value=26 Score=23.08 Aligned_cols=31 Identities=23% Similarity=0.430 Sum_probs=22.9
Q ss_pred ceeeEEEeCCch-------HHHHHHHHhhccCCEEEEE
Q 035717 4 EGIDIYFENVGG-------KMLDAVLINMKIGGQIAVC 34 (125)
Q Consensus 4 ~g~Dvv~d~~g~-------~~~~~~~~~l~~~G~~v~~ 34 (125)
..+|+|+-...- ..+....++|+++|+++..
T Consensus 92 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 92 QALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred CCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 368888754331 2578889999999998875
No 209
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=53.45 E-value=13 Score=27.35 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=22.9
Q ss_pred ceee--EEEeCCch-HHHHHHHHhhc-cCCEEEEEcc
Q 035717 4 EGID--IYFENVGG-KMLDAVLINMK-IGGQIAVCGM 36 (125)
Q Consensus 4 ~g~D--vv~d~~g~-~~~~~~~~~l~-~~G~~v~~g~ 36 (125)
-|+| +|+||+|. ..-+.+...|+ .|.+=|.+..
T Consensus 223 ~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkViiSA 259 (477)
T PRK08289 223 YGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLLTA 259 (477)
T ss_pred cCCCeEEEEeCccccCCHHHHhhchhccCCCEEEECC
Confidence 3899 99999995 45566777888 5555554443
No 210
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=53.26 E-value=24 Score=23.29 Aligned_cols=31 Identities=23% Similarity=0.203 Sum_probs=23.2
Q ss_pred eeeEEEeCCc-------hHHHHHHHHhhccCCEEEEEc
Q 035717 5 GIDIYFENVG-------GKMLDAVLINMKIGGQIAVCG 35 (125)
Q Consensus 5 g~Dvv~d~~g-------~~~~~~~~~~l~~~G~~v~~g 35 (125)
.+|+|+.+.+ ...++..-+.|+|+|+++.+-
T Consensus 145 s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiE 182 (252)
T KOG4300|consen 145 SYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIE 182 (252)
T ss_pred CeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 4788876432 136788889999999998874
No 211
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=53.14 E-value=18 Score=25.16 Aligned_cols=29 Identities=21% Similarity=0.453 Sum_probs=22.4
Q ss_pred ceeeEEEeCCch--------HHHHHHHHhhccCCEEEE
Q 035717 4 EGIDIYFENVGG--------KMLDAVLINMKIGGQIAV 33 (125)
Q Consensus 4 ~g~Dvv~d~~g~--------~~~~~~~~~l~~~G~~v~ 33 (125)
+.||+|| |.|. ..+.+.-++|+++|.+|.
T Consensus 181 ~~FDtVF-~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvL 217 (315)
T PF08003_consen 181 GAFDTVF-SMGVLYHRRSPLDHLKQLKDSLRPGGELVL 217 (315)
T ss_pred CCcCEEE-EeeehhccCCHHHHHHHHHHhhCCCCEEEE
Confidence 4689998 5653 257788889999999875
No 212
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=52.99 E-value=16 Score=25.58 Aligned_cols=34 Identities=15% Similarity=0.401 Sum_probs=24.6
Q ss_pred CceeeEEEeCC----c--------hHHHHHHHHhhccCCEEEEEcc
Q 035717 3 PEGIDIYFENV----G--------GKMLDAVLINMKIGGQIAVCGM 36 (125)
Q Consensus 3 ~~g~Dvv~d~~----g--------~~~~~~~~~~l~~~G~~v~~g~ 36 (125)
++.+|+|+-.. | ...+..+.+.|+++|+++.++.
T Consensus 259 ~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 259 KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 34688888532 1 1246788899999999998865
No 213
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=52.91 E-value=25 Score=22.63 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=22.4
Q ss_pred ceeeEEEeCCc-------hHHHHHHHHhhccCCEEEEEc
Q 035717 4 EGIDIYFENVG-------GKMLDAVLINMKIGGQIAVCG 35 (125)
Q Consensus 4 ~g~Dvv~d~~g-------~~~~~~~~~~l~~~G~~v~~g 35 (125)
..+|+|+-+.+ ...+..+.+.|+++|+++.+-
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 113 NSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred CCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEE
Confidence 35888874322 124677889999999998753
No 214
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=52.27 E-value=15 Score=27.07 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=27.9
Q ss_pred ceeeEEEeCCchHH-H-HHHHHhhccCCEEEEEccc
Q 035717 4 EGIDIYFENVGGKM-L-DAVLINMKIGGQIAVCGMI 37 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~-~-~~~~~~l~~~G~~v~~g~~ 37 (125)
+..|+|+.++|... + ...++.+++++.++.+|..
T Consensus 308 ~~ADIVI~atGt~~iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 308 ETADIFVTATGNKDIITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred hcCCEEEECCCcccccCHHHHhccCCCcEEEEcCCC
Confidence 36799999988653 4 4899999999999999864
No 215
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=52.21 E-value=30 Score=24.92 Aligned_cols=18 Identities=33% Similarity=0.580 Sum_probs=15.2
Q ss_pred HHHHHHHhhccCCEEEEE
Q 035717 17 MLDAVLINMKIGGQIAVC 34 (125)
Q Consensus 17 ~~~~~~~~l~~~G~~v~~ 34 (125)
.+..++++|+++|++|..
T Consensus 350 lL~~a~~~LkpgG~lvys 367 (426)
T TIGR00563 350 ILDAIWPLLKTGGTLVYA 367 (426)
T ss_pred HHHHHHHhcCCCcEEEEE
Confidence 466788999999999975
No 216
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=51.94 E-value=35 Score=18.98 Aligned_cols=28 Identities=21% Similarity=0.352 Sum_probs=18.7
Q ss_pred EEEeCCch---HHHHHHHHhhccCCEEEEEc
Q 035717 8 IYFENVGG---KMLDAVLINMKIGGQIAVCG 35 (125)
Q Consensus 8 vv~d~~g~---~~~~~~~~~l~~~G~~v~~g 35 (125)
+|+|+..+ ..+..+..+++-||-++.+-
T Consensus 15 ~i~d~~~g~~pnal~a~~gtv~gGGllill~ 45 (92)
T PF08351_consen 15 LIFDAFEGFDPNALAALAGTVRGGGLLILLL 45 (92)
T ss_dssp EEEE-SS---HHHHHHHHTTB-TT-EEEEEE
T ss_pred EEEEccCCCCHHHHHHHhcceecCeEEEEEc
Confidence 47787764 35788889999999988874
No 217
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=51.91 E-value=18 Score=23.56 Aligned_cols=32 Identities=13% Similarity=0.187 Sum_probs=23.9
Q ss_pred eeeEEEeCCch---------HHHHHHHHhhccCCEEEEEcc
Q 035717 5 GIDIYFENVGG---------KMLDAVLINMKIGGQIAVCGM 36 (125)
Q Consensus 5 g~Dvv~d~~g~---------~~~~~~~~~l~~~G~~v~~g~ 36 (125)
.||.|+|.+.- ...+...+.|+|+|++..+..
T Consensus 116 ~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l 156 (218)
T PF05724_consen 116 KFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITL 156 (218)
T ss_dssp SEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 58999996541 146788889999999666654
No 218
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=51.78 E-value=73 Score=21.59 Aligned_cols=48 Identities=13% Similarity=-0.057 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEEe
Q 035717 74 PKFLEMIIPHIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 74 ~~~~~~~~~l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 122 (125)
.+.+.++.+.+++..++|.... |+.+++..+...++++-..+.+.+.+
T Consensus 125 ~~~~~~~~~~~~e~Gi~pe~ev-~d~~~l~~~~~l~~~G~l~~p~~~~~ 172 (272)
T PF05853_consen 125 PADARELARRMRERGIKPEIEV-FDPGHLRNARRLIEKGLLPGPLLVNF 172 (272)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE-SSHHHHHHHHHHHHTTSS-SSEEEEE
T ss_pred HHHHHHHHHHHHHcCCeEEEEE-EcHHHHHHHHHHHHCCCCCCCeEEEE
Confidence 4567888999999999997776 89999999998888876556655543
No 219
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=51.69 E-value=19 Score=23.17 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=21.7
Q ss_pred ceeeEEEeCCc-hHHHHHHHHhhccCCEEEEE
Q 035717 4 EGIDIYFENVG-GKMLDAVLINMKIGGQIAVC 34 (125)
Q Consensus 4 ~g~Dvv~d~~g-~~~~~~~~~~l~~~G~~v~~ 34 (125)
..+|+|+-... ........+.|+++|+++..
T Consensus 145 ~~fD~Ii~~~~~~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 145 APYDRIYVTAAGPKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred CCCCEEEEcCCcccccHHHHHhcCcCcEEEEE
Confidence 36898774333 33456778899999998764
No 220
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=51.66 E-value=29 Score=21.98 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=23.5
Q ss_pred ceeeEEEeCCc-------hHHHHHHHHhhccCCEEEEEcc
Q 035717 4 EGIDIYFENVG-------GKMLDAVLINMKIGGQIAVCGM 36 (125)
Q Consensus 4 ~g~Dvv~d~~g-------~~~~~~~~~~l~~~G~~v~~g~ 36 (125)
..+|+|+-..+ ...++.+.+.|+++|+++.+..
T Consensus 105 ~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 105 NSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred CcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 35888864322 1247788899999999998764
No 221
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=50.54 E-value=32 Score=22.58 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=21.7
Q ss_pred ceeeEEEeCCc----hHHHHHHHHhhccCCEEEE
Q 035717 4 EGIDIYFENVG----GKMLDAVLINMKIGGQIAV 33 (125)
Q Consensus 4 ~g~Dvv~d~~g----~~~~~~~~~~l~~~G~~v~ 33 (125)
+.+|+||--.. ...+..+++++++||.++.
T Consensus 143 ~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 143 PEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 36899874332 2357888999999998764
No 222
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=50.32 E-value=38 Score=23.81 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=23.5
Q ss_pred eeeEEEeCCc-------hHHHHHHHHhhccCCEEEEEcc
Q 035717 5 GIDIYFENVG-------GKMLDAVLINMKIGGQIAVCGM 36 (125)
Q Consensus 5 g~Dvv~d~~g-------~~~~~~~~~~l~~~G~~v~~g~ 36 (125)
.+|+|+.+-. ...++++.+.|+++|+++.++.
T Consensus 178 sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 178 YADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred ceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 5898875321 1257889999999999987653
No 223
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=49.98 E-value=73 Score=21.04 Aligned_cols=32 Identities=19% Similarity=0.150 Sum_probs=24.2
Q ss_pred eeeEEEeCCch---------HHHHHHHHhhccCCEEEEEcc
Q 035717 5 GIDIYFENVGG---------KMLDAVLINMKIGGQIAVCGM 36 (125)
Q Consensus 5 g~Dvv~d~~g~---------~~~~~~~~~l~~~G~~v~~g~ 36 (125)
.+|.|+|...- ...+...+.|+++|+++.+..
T Consensus 124 ~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 124 VFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred CcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 58999995531 145677788999999988865
No 224
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=49.58 E-value=33 Score=19.66 Aligned_cols=32 Identities=13% Similarity=0.120 Sum_probs=21.7
Q ss_pred eeeEEEeCCchHHHHH----HHHhhccCCEEEEEcc
Q 035717 5 GIDIYFENVGGKMLDA----VLINMKIGGQIAVCGM 36 (125)
Q Consensus 5 g~Dvv~d~~g~~~~~~----~~~~l~~~G~~v~~g~ 36 (125)
+.|+||-|++...... ....+.++..++.++.
T Consensus 65 ~~DvV~~~~~~~~~~~~~~~~~~~~~~g~~viD~s~ 100 (122)
T smart00859 65 AVDIVFLALPHGVSKEIAPLLPKAAEAGVKVIDLSS 100 (122)
T ss_pred CCCEEEEcCCcHHHHHHHHHHHhhhcCCCEEEECCc
Confidence 6799999998654332 3445567777777764
No 225
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=49.53 E-value=22 Score=22.75 Aligned_cols=33 Identities=15% Similarity=0.418 Sum_probs=23.2
Q ss_pred ceeeEEEeC-----Cch--HHHHHHHHhhccCCEEEEEcc
Q 035717 4 EGIDIYFEN-----VGG--KMLDAVLINMKIGGQIAVCGM 36 (125)
Q Consensus 4 ~g~Dvv~d~-----~g~--~~~~~~~~~l~~~G~~v~~g~ 36 (125)
..+|+|+.. ++. ..++...+.|+|+|+++....
T Consensus 66 ~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 66 DTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred CCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 458888732 222 357888899999999987643
No 226
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=49.14 E-value=30 Score=21.14 Aligned_cols=35 Identities=14% Similarity=0.232 Sum_probs=24.1
Q ss_pred ceeeEEEeCCc-----hHHHHHHHHhhccCC--EEEEEcccc
Q 035717 4 EGIDIYFENVG-----GKMLDAVLINMKIGG--QIAVCGMIS 38 (125)
Q Consensus 4 ~g~Dvv~d~~g-----~~~~~~~~~~l~~~G--~~v~~g~~~ 38 (125)
.|+|+||.++| .......++.++..| +++.++..+
T Consensus 59 ~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~s~~~ 100 (183)
T PF13460_consen 59 KGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVKRVVYLSSAG 100 (183)
T ss_dssp TTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSSEEEEEEETT
T ss_pred hhcchhhhhhhhhcccccccccccccccccccccceeeeccc
Confidence 47899999998 234556666666655 788776544
No 227
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=48.40 E-value=32 Score=21.63 Aligned_cols=31 Identities=23% Similarity=0.375 Sum_probs=21.1
Q ss_pred ceeeEEEeCC-ch--HHHHHHHHhhccCCEEEEE
Q 035717 4 EGIDIYFENV-GG--KMLDAVLINMKIGGQIAVC 34 (125)
Q Consensus 4 ~g~Dvv~d~~-g~--~~~~~~~~~l~~~G~~v~~ 34 (125)
..+|+|+-.. .. ..++.+.+.|+++|+++..
T Consensus 108 ~~fD~I~s~~~~~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 108 EQFDVITSRALASLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred CCccEEEehhhhCHHHHHHHHHHhcCCCCEEEEE
Confidence 3578887432 11 2456778889999998865
No 228
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=48.16 E-value=35 Score=23.65 Aligned_cols=31 Identities=16% Similarity=0.162 Sum_probs=22.6
Q ss_pred ceeeEEEeCCc-------hHHHHHHHHhhccCCEEEEE
Q 035717 4 EGIDIYFENVG-------GKMLDAVLINMKIGGQIAVC 34 (125)
Q Consensus 4 ~g~Dvv~d~~g-------~~~~~~~~~~l~~~G~~v~~ 34 (125)
..+|+|+-.-. ...+....++|+++|+++.-
T Consensus 188 ~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 188 KAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred CCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 46899885311 13578999999999999764
No 229
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=47.81 E-value=35 Score=22.51 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=22.5
Q ss_pred ceeeEEEeCCc-------hHHHHHHHHhhccCCEEEEE
Q 035717 4 EGIDIYFENVG-------GKMLDAVLINMKIGGQIAVC 34 (125)
Q Consensus 4 ~g~Dvv~d~~g-------~~~~~~~~~~l~~~G~~v~~ 34 (125)
..+|+|+-... ...+....+.|+|+|+++..
T Consensus 88 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 88 PDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred CCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence 35888886433 12467888999999998764
No 230
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=47.64 E-value=31 Score=22.29 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=24.3
Q ss_pred ceeeEEEeCCchH----------HHHHHHHhhccCC--EEEEEcccc
Q 035717 4 EGIDIYFENVGGK----------MLDAVLINMKIGG--QIAVCGMIS 38 (125)
Q Consensus 4 ~g~Dvv~d~~g~~----------~~~~~~~~l~~~G--~~v~~g~~~ 38 (125)
.|+|+|+++.|.. ..+..+..|+..| |+..+|+.+
T Consensus 61 ~g~DaVIsA~~~~~~~~~~~~~k~~~~li~~l~~agv~RllVVGGAG 107 (211)
T COG2910 61 AGHDAVISAFGAGASDNDELHSKSIEALIEALKGAGVPRLLVVGGAG 107 (211)
T ss_pred cCCceEEEeccCCCCChhHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 4899999988753 2344667777645 788887643
No 231
>PRK08317 hypothetical protein; Provisional
Probab=47.55 E-value=42 Score=21.40 Aligned_cols=32 Identities=16% Similarity=0.269 Sum_probs=22.7
Q ss_pred ceeeEEEeCC-----ch--HHHHHHHHhhccCCEEEEEc
Q 035717 4 EGIDIYFENV-----GG--KMLDAVLINMKIGGQIAVCG 35 (125)
Q Consensus 4 ~g~Dvv~d~~-----g~--~~~~~~~~~l~~~G~~v~~g 35 (125)
..+|+|+-.. .. ..+....++|+++|+++...
T Consensus 86 ~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 86 GSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred CCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence 4578876432 21 25788999999999998764
No 232
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=47.27 E-value=18 Score=21.97 Aligned_cols=20 Identities=35% Similarity=0.429 Sum_probs=16.3
Q ss_pred HHHHHHHhhccCCEEEEEcc
Q 035717 17 MLDAVLINMKIGGQIAVCGM 36 (125)
Q Consensus 17 ~~~~~~~~l~~~G~~v~~g~ 36 (125)
.++++++.|+++|.++.+.-
T Consensus 74 Al~~al~lL~~gG~i~iv~Y 93 (140)
T PF06962_consen 74 ALEAALELLKPGGIITIVVY 93 (140)
T ss_dssp HHHHHHHHEEEEEEEEEEE-
T ss_pred HHHHHHHhhccCCEEEEEEe
Confidence 47899999999999887743
No 233
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=47.27 E-value=29 Score=20.74 Aligned_cols=32 Identities=28% Similarity=0.430 Sum_probs=23.9
Q ss_pred ceeeEEEeCC-----ch--HHHHHHHHhhccCCEEEEEc
Q 035717 4 EGIDIYFENV-----GG--KMLDAVLINMKIGGQIAVCG 35 (125)
Q Consensus 4 ~g~Dvv~d~~-----g~--~~~~~~~~~l~~~G~~v~~g 35 (125)
..+|+|+... .. ..+....++|+++|.++..-
T Consensus 72 ~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~ 110 (152)
T PF13847_consen 72 EKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISD 110 (152)
T ss_dssp TTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEE
Confidence 5799998753 22 24788899999999987653
No 234
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=46.23 E-value=43 Score=22.03 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=23.6
Q ss_pred CceeeEEE-eCCch---HHHHHHHHhhccCCEEEEE
Q 035717 3 PEGIDIYF-ENVGG---KMLDAVLINMKIGGQIAVC 34 (125)
Q Consensus 3 ~~g~Dvv~-d~~g~---~~~~~~~~~l~~~G~~v~~ 34 (125)
...+|+|| |+--. ..++.+++.|++||-+|.=
T Consensus 130 ~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 130 DGSFDLVFIDADKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred CCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 35689887 44433 3689999999999988754
No 235
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=46.01 E-value=51 Score=22.27 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=23.8
Q ss_pred ceeeEEEeCCch--HHHHHHHHhhccCCEEEEEc
Q 035717 4 EGIDIYFENVGG--KMLDAVLINMKIGGQIAVCG 35 (125)
Q Consensus 4 ~g~Dvv~d~~g~--~~~~~~~~~l~~~G~~v~~g 35 (125)
..||.||--... ..++.+.+.|+++|+++.+-
T Consensus 162 ~~vDav~LDmp~PW~~le~~~~~Lkpgg~~~~y~ 195 (256)
T COG2519 162 EDVDAVFLDLPDPWNVLEHVSDALKPGGVVVVYS 195 (256)
T ss_pred cccCEEEEcCCChHHHHHHHHHHhCCCcEEEEEc
Confidence 457876533333 36889999999999999884
No 236
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=45.59 E-value=40 Score=24.37 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=15.1
Q ss_pred HHHHHHHhhccCCEEEEE
Q 035717 17 MLDAVLINMKIGGQIAVC 34 (125)
Q Consensus 17 ~~~~~~~~l~~~G~~v~~ 34 (125)
.+..+.+.|++||+++..
T Consensus 354 iL~~a~~~LkpGG~lvys 371 (427)
T PRK10901 354 ILDALWPLLKPGGTLLYA 371 (427)
T ss_pred HHHHHHHhcCCCCEEEEE
Confidence 467888899999999865
No 237
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=45.52 E-value=33 Score=23.33 Aligned_cols=32 Identities=16% Similarity=0.290 Sum_probs=23.9
Q ss_pred eeeEE-----EeCCch--HHHHHHHHhhccCCEEEEEcc
Q 035717 5 GIDIY-----FENVGG--KMLDAVLINMKIGGQIAVCGM 36 (125)
Q Consensus 5 g~Dvv-----~d~~g~--~~~~~~~~~l~~~G~~v~~g~ 36 (125)
.+|+| +|++-. +.+....++|+|+|..|.+|-
T Consensus 165 ~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GP 203 (270)
T PF07942_consen 165 SFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGP 203 (270)
T ss_pred cccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCC
Confidence 46666 466543 357788889999999999985
No 238
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=45.32 E-value=23 Score=26.34 Aligned_cols=30 Identities=23% Similarity=0.480 Sum_probs=24.5
Q ss_pred ceeeEE-EeCCchH--HHHHHHHhhccCCEEEE
Q 035717 4 EGIDIY-FENVGGK--MLDAVLINMKIGGQIAV 33 (125)
Q Consensus 4 ~g~Dvv-~d~~g~~--~~~~~~~~l~~~G~~v~ 33 (125)
+-||+| +|+.|.. .+..++++++.+|-+..
T Consensus 182 ~~FDvIDLDPyGs~s~FLDsAvqav~~gGLL~v 214 (525)
T KOG1253|consen 182 KFFDVIDLDPYGSPSPFLDSAVQAVRDGGLLCV 214 (525)
T ss_pred cccceEecCCCCCccHHHHHHHHHhhcCCEEEE
Confidence 468888 8999964 58999999999996644
No 239
>PF09377 SBDS_C: SBDS protein C-terminal domain; InterPro: IPR018978 This entry represents the C-terminal domain of proteins that are highly conserved in species ranging from archaea to vertebrates and plants []. The family contains several Shwachman-Bodian-Diamond syndrome (SBDS, OMIM 260400) proteins from both mouse and humans. Shwachman-Diamond syndrome is an autosomal recessive disorder with clinical features that include pancreatic exocrine insufficiency, haematological dysfunction and skeletal abnormalities. It is characterised by bone marrow failure and leukemia predisposition. Members of this family play a role in RNA metabolism [, ]. In yeast Sdo1 is involved in the biogenesis of the 60S ribosomal subunit and translational activation of ribosomes. Together with the EF-2-like GTPase RIA1 (EfI1), it triggers the GTP-dependent release of TIF6 from 60S pre-ribosomes in the cytoplasm, thereby activating ribosomes for translation competence by allowing 80S ribosome assembly and facilitating TIF6 recycling to the nucleus, where it is required for 60S rRNA processing and nuclear export. This data links defective late 60S subunit maturation to an inherited bone marrow failure syndrome associated with leukemia predisposition []. A number of uncharacterised hydrophilic proteins of about 30 kDa share regions of similarity. These include, Mouse protein 22A3. Saccharomyces cerevisiae chromosome XII hypothetical protein YLR022c. Caenorhabditis elegans hypothetical protein W06E11.4. Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ0592. ; GO: 0042254 ribosome biogenesis; PDB: 2KDO_A 2L9N_A 2WBM_B 1P9Q_C 1T95_A.
Probab=44.15 E-value=17 Score=21.53 Aligned_cols=33 Identities=9% Similarity=-0.178 Sum_probs=16.0
Q ss_pred HHHHHHHHHcCceeeeeecccchhHHHHHHHHH
Q 035717 77 LEMIIPHIKWAKIVYIEDTAEGLESALAARVGL 109 (125)
Q Consensus 77 ~~~~~~l~~~g~i~~~~~~~~~l~~~~~a~~~~ 109 (125)
+.+++.++.+.-+.|.....||..-++.|++.+
T Consensus 3 ~keI~~~Ia~~~VnP~T~rP~p~~~IE~Am~e~ 35 (125)
T PF09377_consen 3 FKEIATIIAEKCVNPRTNRPYPPTRIEKAMKEA 35 (125)
T ss_dssp HHHHHHHHHHHEEBTTTTBTT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhC
Confidence 344555555555555444445555555555443
No 240
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=43.96 E-value=53 Score=20.97 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=23.5
Q ss_pred ceeeEEEeCCch-------HHHHHHHHhhccCCEEEEEc
Q 035717 4 EGIDIYFENVGG-------KMLDAVLINMKIGGQIAVCG 35 (125)
Q Consensus 4 ~g~Dvv~d~~g~-------~~~~~~~~~l~~~G~~v~~g 35 (125)
..+|+|+....- ..+....+.|+++|.++...
T Consensus 97 ~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 97 SSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred CceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEe
Confidence 458999864321 25778888999999998754
No 241
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=43.52 E-value=34 Score=22.38 Aligned_cols=18 Identities=33% Similarity=0.322 Sum_probs=15.3
Q ss_pred HHHHHHHhhccCCEEEEE
Q 035717 17 MLDAVLINMKIGGQIAVC 34 (125)
Q Consensus 17 ~~~~~~~~l~~~G~~v~~ 34 (125)
...+.++.|+|||.++..
T Consensus 148 vna~vf~~LKPGGv~~V~ 165 (238)
T COG4798 148 VNAAVFKALKPGGVYLVE 165 (238)
T ss_pred HHHHHHHhcCCCcEEEEE
Confidence 467889999999998776
No 242
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=43.31 E-value=46 Score=23.74 Aligned_cols=32 Identities=13% Similarity=0.265 Sum_probs=25.2
Q ss_pred ceeeEE-EeCCch--HHHHHHHHhhccCCEEEEEc
Q 035717 4 EGIDIY-FENVGG--KMLDAVLINMKIGGQIAVCG 35 (125)
Q Consensus 4 ~g~Dvv-~d~~g~--~~~~~~~~~l~~~G~~v~~g 35 (125)
..+|+| +|+.|. +.++.++++++++|-+...+
T Consensus 113 ~~fDvIdlDPfGs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 113 RKFHVIDIDPFGTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred CCCCEEEeCCCCCcHHHHHHHHHhcccCCEEEEEe
Confidence 358987 799886 56889999999998776653
No 243
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=43.18 E-value=24 Score=24.96 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=26.2
Q ss_pred eeeEEEeCC---ch--H--HHHHHHHhhccCCEEEEEcccc
Q 035717 5 GIDIYFENV---GG--K--MLDAVLINMKIGGQIAVCGMIS 38 (125)
Q Consensus 5 g~Dvv~d~~---g~--~--~~~~~~~~l~~~G~~v~~g~~~ 38 (125)
.+|++++++ |. + .....++.+++++.++.++...
T Consensus 230 ~aDvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva~d~ 270 (370)
T TIGR00518 230 RADLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVAIDQ 270 (370)
T ss_pred cCCEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEEEecCC
Confidence 689999987 32 2 1367888899999999998643
No 244
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=43.10 E-value=29 Score=23.89 Aligned_cols=22 Identities=41% Similarity=0.505 Sum_probs=18.5
Q ss_pred HHHHHHHhhccCCEEEEEcccc
Q 035717 17 MLDAVLINMKIGGQIAVCGMIS 38 (125)
Q Consensus 17 ~~~~~~~~l~~~G~~v~~g~~~ 38 (125)
.+..+.++|+++|+++.+..-+
T Consensus 218 ~L~~~~~~L~~gGrl~visfHS 239 (296)
T PRK00050 218 ALEAALDLLKPGGRLAVISFHS 239 (296)
T ss_pred HHHHHHHHhcCCCEEEEEecCc
Confidence 4678889999999999997654
No 245
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=42.69 E-value=54 Score=22.16 Aligned_cols=33 Identities=15% Similarity=0.189 Sum_probs=22.9
Q ss_pred CceeeEEEeCCc-----h----HHHHHHHHhhccCCEEEEEc
Q 035717 3 PEGIDIYFENVG-----G----KMLDAVLINMKIGGQIAVCG 35 (125)
Q Consensus 3 ~~g~Dvv~d~~g-----~----~~~~~~~~~l~~~G~~v~~g 35 (125)
++.+|+|+...- . ..+....++|+++|.++.+.
T Consensus 182 ~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 182 QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 346899986431 1 14677888999999976654
No 246
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=42.24 E-value=68 Score=20.43 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=13.2
Q ss_pred HHHHHHHhhccCCEEEEE
Q 035717 17 MLDAVLINMKIGGQIAVC 34 (125)
Q Consensus 17 ~~~~~~~~l~~~G~~v~~ 34 (125)
.++.+.++|+++|+++..
T Consensus 138 ~l~~i~~~LkpgG~l~i~ 155 (202)
T PRK00121 138 FLALYARKLKPGGEIHFA 155 (202)
T ss_pred HHHHHHHHcCCCCEEEEE
Confidence 466777788888887765
No 247
>PRK07402 precorrin-6B methylase; Provisional
Probab=41.96 E-value=74 Score=19.99 Aligned_cols=20 Identities=30% Similarity=0.526 Sum_probs=15.6
Q ss_pred HHHHHHHHhhccCCEEEEEc
Q 035717 16 KMLDAVLINMKIGGQIAVCG 35 (125)
Q Consensus 16 ~~~~~~~~~l~~~G~~v~~g 35 (125)
..++.+.+.|+++|+++...
T Consensus 123 ~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 123 EILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred HHHHHHHHhcCCCeEEEEEe
Confidence 35778888899999988764
No 248
>PLN03075 nicotianamine synthase; Provisional
Probab=41.37 E-value=44 Score=23.09 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=23.6
Q ss_pred ceeeEEEeCC------ch--HHHHHHHHhhccCCEEEEEc
Q 035717 4 EGIDIYFENV------GG--KMLDAVLINMKIGGQIAVCG 35 (125)
Q Consensus 4 ~g~Dvv~d~~------g~--~~~~~~~~~l~~~G~~v~~g 35 (125)
..+|+||-.+ .. ..+....+.|+|||.++.=.
T Consensus 194 ~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 194 KEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred CCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 4789988643 11 25788999999999988643
No 249
>PLN02366 spermidine synthase
Probab=41.34 E-value=50 Score=22.84 Aligned_cols=32 Identities=13% Similarity=0.270 Sum_probs=22.2
Q ss_pred ceeeEEE-eCCc----------hHHHHHHHHhhccCCEEEEEc
Q 035717 4 EGIDIYF-ENVG----------GKMLDAVLINMKIGGQIAVCG 35 (125)
Q Consensus 4 ~g~Dvv~-d~~g----------~~~~~~~~~~l~~~G~~v~~g 35 (125)
+.+|+|+ |+.. .+.++.+.++|+++|.++.-+
T Consensus 164 ~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 164 GTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred CCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 3589976 3322 124778889999999997654
No 250
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=41.21 E-value=53 Score=23.52 Aligned_cols=32 Identities=16% Similarity=0.187 Sum_probs=23.1
Q ss_pred eeeEEEeCC----c--------hHHHHHHHHhhccCCEEEEEcc
Q 035717 5 GIDIYFENV----G--------GKMLDAVLINMKIGGQIAVCGM 36 (125)
Q Consensus 5 g~Dvv~d~~----g--------~~~~~~~~~~l~~~G~~v~~g~ 36 (125)
.+|+|+-.. + ...+..+.++|+++|++..++.
T Consensus 298 ~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 298 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred CEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 588887631 1 1246778889999999998864
No 251
>COG4013 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.75 E-value=64 Score=17.76 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=19.3
Q ss_pred cchhHHHHHHHHHhcCCCcCeEEEEecCC
Q 035717 97 EGLESALAARVGLFSGRNLGKQVAAVASE 125 (125)
Q Consensus 97 ~~l~~~~~a~~~~~~~~~~gkvvi~~~~~ 125 (125)
++++.+-+-+-.+.....-|++++.+-||
T Consensus 63 ~diEki~~~llEl~He~~eg~~v~e~~DE 91 (91)
T COG4013 63 VDIEKILDDLLELVHENGEGRVVLEFYDE 91 (91)
T ss_pred EEHHHHHHHHHHHhccCCCcEEEEEecCC
Confidence 78888755544444444568999998765
No 252
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=40.71 E-value=19 Score=24.94 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=18.6
Q ss_pred HHHHHHHhhccCCEEEEEcccc
Q 035717 17 MLDAVLINMKIGGQIAVCGMIS 38 (125)
Q Consensus 17 ~~~~~~~~l~~~G~~v~~g~~~ 38 (125)
.+..+.++|+++||++.+..-|
T Consensus 223 ~L~~a~~~L~~gGrl~VISFHS 244 (310)
T PF01795_consen 223 GLEAAPDLLKPGGRLVVISFHS 244 (310)
T ss_dssp HHHHHHHHEEEEEEEEEEESSH
T ss_pred HHHHHHHHhcCCcEEEEEEecc
Confidence 4678889999999999997654
No 253
>COG2082 CobH Precorrin isomerase [Coenzyme metabolism]
Probab=40.36 E-value=66 Score=21.06 Aligned_cols=40 Identities=18% Similarity=0.075 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHcCceeeeeec--ccchhHHHHHHHHHhcCC
Q 035717 74 PKFLEMIIPHIKWAKIVYIEDT--AEGLESALAARVGLFSGR 113 (125)
Q Consensus 74 ~~~~~~~~~l~~~g~i~~~~~~--~~~l~~~~~a~~~~~~~~ 113 (125)
+.++-+++++++++.++|.... ...|-...++-+.+.+..
T Consensus 138 PTAL~~l~elie~~~~~palvIg~PVGFv~AaesKe~L~~~~ 179 (210)
T COG2082 138 PTALFELLELIEEGGIKPALVIGVPVGFVGAAESKEALRESP 179 (210)
T ss_pred HHHHHHHHHHHHccCCCCcEEEEcCCcccchHHHHHHHHhCC
Confidence 5678999999999988876544 367778888887777654
No 254
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=40.30 E-value=37 Score=22.82 Aligned_cols=32 Identities=16% Similarity=-0.006 Sum_probs=20.6
Q ss_pred eeeEEEeCCchHHHHHHHHhhccCCEEEEEcc
Q 035717 5 GIDIYFENVGGKMLDAVLINMKIGGQIAVCGM 36 (125)
Q Consensus 5 g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~ 36 (125)
.+|+|+|++...........+...|.-+.+|-
T Consensus 68 ~~DvVIdfT~p~~~~~~~~~al~~g~~vVigt 99 (266)
T TIGR00036 68 DPDVLIDFTTPEGVLNHLKFALEHGVRLVVGT 99 (266)
T ss_pred CCCEEEECCChHHHHHHHHHHHHCCCCEEEEC
Confidence 47999999976654445554455565555554
No 255
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=40.13 E-value=51 Score=22.12 Aligned_cols=31 Identities=26% Similarity=0.238 Sum_probs=22.5
Q ss_pred ceeeEEEeCCchHH-HHHHHHhhccCCEEEEE
Q 035717 4 EGIDIYFENVGGKM-LDAVLINMKIGGQIAVC 34 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~-~~~~~~~l~~~G~~v~~ 34 (125)
..+|+|++|++... .+.+..+|+.+-.++..
T Consensus 60 ~~~DvVve~t~~~~~~e~~~~aL~aGk~Vvi~ 91 (265)
T PRK13303 60 QRPDLVVECAGHAALKEHVVPILKAGIDCAVI 91 (265)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHcCCCEEEe
Confidence 45899999999754 56777788766566643
No 256
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=40.11 E-value=54 Score=22.71 Aligned_cols=35 Identities=17% Similarity=0.385 Sum_probs=27.5
Q ss_pred ceeeEEEeCCchH----HHHHHHHhhccCCEEEEEcccc
Q 035717 4 EGIDIYFENVGGK----MLDAVLINMKIGGQIAVCGMIS 38 (125)
Q Consensus 4 ~g~Dvv~d~~g~~----~~~~~~~~l~~~G~~v~~g~~~ 38 (125)
+.+|+|+-++=.+ ..+....+++|+|+++.-|...
T Consensus 228 ~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl~ 266 (300)
T COG2264 228 GPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSGILE 266 (300)
T ss_pred CcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeehH
Confidence 3689998777543 3567888999999999998755
No 257
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=40.04 E-value=32 Score=23.70 Aligned_cols=35 Identities=17% Similarity=0.349 Sum_probs=25.6
Q ss_pred ceeeEEEeCCchHH----HHHHHHhhccCCEEEEEcccc
Q 035717 4 EGIDIYFENVGGKM----LDAVLINMKIGGQIAVCGMIS 38 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~----~~~~~~~l~~~G~~v~~g~~~ 38 (125)
..+|+|+-..-... .....++++++|.++.-|...
T Consensus 224 ~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~ 262 (295)
T PF06325_consen 224 GKFDLVVANILADVLLELAPDIASLLKPGGYLILSGILE 262 (295)
T ss_dssp S-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEEG
T ss_pred ccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEccccH
Confidence 46899998777653 455667899999999988755
No 258
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=39.54 E-value=44 Score=21.61 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=22.3
Q ss_pred ceeeEEE-eCCchH---HHHHHHHhhccCCEEEEE
Q 035717 4 EGIDIYF-ENVGGK---MLDAVLINMKIGGQIAVC 34 (125)
Q Consensus 4 ~g~Dvv~-d~~g~~---~~~~~~~~l~~~G~~v~~ 34 (125)
..+|.|| |+--.. .+..++++|+++|.++.=
T Consensus 120 ~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 120 GQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp TSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred CceeEEEEcccccchhhHHHHHhhhccCCeEEEEc
Confidence 3589886 554332 577888999999988753
No 259
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=39.25 E-value=47 Score=23.76 Aligned_cols=32 Identities=28% Similarity=0.561 Sum_probs=25.3
Q ss_pred ceeeEE-EeCCchH--HHHHHHHhhccCCEEEEEc
Q 035717 4 EGIDIY-FENVGGK--MLDAVLINMKIGGQIAVCG 35 (125)
Q Consensus 4 ~g~Dvv-~d~~g~~--~~~~~~~~l~~~G~~v~~g 35 (125)
..+|+| +|+.|.+ .+++++.+++.+|-+-.-+
T Consensus 120 ~~fd~IDiDPFGSPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 120 RAFDVIDIDPFGSPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred CCccEEecCCCCCCchHHHHHHHHhhcCCEEEEEe
Confidence 468888 8999964 6899999999988765543
No 260
>PLN02476 O-methyltransferase
Probab=38.88 E-value=66 Score=22.00 Aligned_cols=30 Identities=20% Similarity=0.416 Sum_probs=21.7
Q ss_pred ceeeEEE-eCCch---HHHHHHHHhhccCCEEEE
Q 035717 4 EGIDIYF-ENVGG---KMLDAVLINMKIGGQIAV 33 (125)
Q Consensus 4 ~g~Dvv~-d~~g~---~~~~~~~~~l~~~G~~v~ 33 (125)
..+|.|| |+--. ..++.+++.|+++|.++.
T Consensus 193 ~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 193 SSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 3588876 44433 257888999999998775
No 261
>PRK10148 hypothetical protein; Provisional
Probab=38.61 E-value=90 Score=18.86 Aligned_cols=29 Identities=14% Similarity=0.227 Sum_probs=21.6
Q ss_pred eeeEEEeCCchHHHHHHHHhhccCCEEEE
Q 035717 5 GIDIYFENVGGKMLDAVLINMKIGGQIAV 33 (125)
Q Consensus 5 g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~ 33 (125)
++-+.+++-..+..+..++.|+.+|+++.
T Consensus 86 ~~~l~l~~~d~ee~~~~~~aLa~gg~v~m 114 (147)
T PRK10148 86 GFTLVLDTQDVEEGKRWFDNLAANGKIEM 114 (147)
T ss_pred eEEEEEECCCHHHHHHHHHHhhCCCEEEe
Confidence 46666766555567788999999999873
No 262
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=37.80 E-value=41 Score=22.89 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=16.8
Q ss_pred HHHHHHHhhccCCEEEEEcc
Q 035717 17 MLDAVLINMKIGGQIAVCGM 36 (125)
Q Consensus 17 ~~~~~~~~l~~~G~~v~~g~ 36 (125)
.+..+.+.|+|+|+++.+-.
T Consensus 236 il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 236 MCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred HHHHHHHhcCCCCEEEEEEe
Confidence 47788899999999988754
No 263
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=37.63 E-value=43 Score=22.39 Aligned_cols=18 Identities=22% Similarity=0.490 Sum_probs=15.1
Q ss_pred HHHHHHHhhccCCEEEEE
Q 035717 17 MLDAVLINMKIGGQIAVC 34 (125)
Q Consensus 17 ~~~~~~~~l~~~G~~v~~ 34 (125)
.+..+++.++++|++|..
T Consensus 181 iL~~a~~~lkpgG~lvYs 198 (264)
T TIGR00446 181 LIDSAFDALKPGGVLVYS 198 (264)
T ss_pred HHHHHHHhcCCCCEEEEE
Confidence 567888999999999865
No 264
>PRK00811 spermidine synthase; Provisional
Probab=37.56 E-value=69 Score=21.73 Aligned_cols=31 Identities=13% Similarity=0.241 Sum_probs=21.4
Q ss_pred ceeeEEEe-CC---c-------hHHHHHHHHhhccCCEEEEE
Q 035717 4 EGIDIYFE-NV---G-------GKMLDAVLINMKIGGQIAVC 34 (125)
Q Consensus 4 ~g~Dvv~d-~~---g-------~~~~~~~~~~l~~~G~~v~~ 34 (125)
+.+|+|+- +. + .+.++.+.+.|+++|.++.-
T Consensus 149 ~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 149 NSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred CcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 46899873 21 1 12356788999999998875
No 265
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=37.33 E-value=48 Score=22.74 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=19.7
Q ss_pred ceeeEEEeCCchHH-HHHHHHhhccCCEEEEE
Q 035717 4 EGIDIYFENVGGKM-LDAVLINMKIGGQIAVC 34 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~-~~~~~~~l~~~G~~v~~ 34 (125)
..+|+||++++... .+.+..++..|-++++.
T Consensus 63 ~dIDaV~iaTp~~~H~e~a~~al~aGk~VIde 94 (285)
T TIGR03215 63 PDIDIVFDATSAKAHARHARLLAELGKIVIDL 94 (285)
T ss_pred CCCCEEEECCCcHHHHHHHHHHHHcCCEEEEC
Confidence 36899999999764 55555555544444443
No 266
>PF07655 Secretin_N_2: Secretin N-terminal domain; InterPro: IPR011514 This is a short domain found in bacterial type II/III secretory system proteins. The architecture of these proteins suggests that this family may be functionally analogous to IPR005644 from INTERPRO.; GO: 0009297 pilus assembly, 0019867 outer membrane
Probab=36.94 E-value=61 Score=18.16 Aligned_cols=23 Identities=13% Similarity=0.166 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHhcCCCcCeEEEE
Q 035717 99 LESALAARVGLFSGRNLGKQVAA 121 (125)
Q Consensus 99 l~~~~~a~~~~~~~~~~gkvvi~ 121 (125)
+++++++++.|......||.+|.
T Consensus 72 W~~L~~~l~~ilg~~~~Gr~vv~ 94 (98)
T PF07655_consen 72 WEDLQKTLQAILGTPGDGRSVVS 94 (98)
T ss_pred HHHHHHHHHHHhCCCCCCCEEEe
Confidence 68899999998864456776654
No 267
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=36.57 E-value=45 Score=20.60 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=15.6
Q ss_pred HHHHHHhhccCCEEEEEcc
Q 035717 18 LDAVLINMKIGGQIAVCGM 36 (125)
Q Consensus 18 ~~~~~~~l~~~G~~v~~g~ 36 (125)
+..+.+.|+++|+++.+..
T Consensus 123 l~~~~~~Lk~gG~~~~~~~ 141 (179)
T TIGR00537 123 LDELPEILKEGGRVQLIQS 141 (179)
T ss_pred HHhHHHhhCCCCEEEEEEe
Confidence 6677789999999988743
No 268
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=36.54 E-value=72 Score=21.21 Aligned_cols=31 Identities=10% Similarity=0.161 Sum_probs=22.1
Q ss_pred eeeEEE-eCCc----------hHHHHHHHHhhccCCEEEEEc
Q 035717 5 GIDIYF-ENVG----------GKMLDAVLINMKIGGQIAVCG 35 (125)
Q Consensus 5 g~Dvv~-d~~g----------~~~~~~~~~~l~~~G~~v~~g 35 (125)
.+|+|+ |... .+.++.+.++|+++|.++.-+
T Consensus 150 ~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 150 KYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp -EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 688876 4432 235788889999999988765
No 269
>PRK06922 hypothetical protein; Provisional
Probab=36.47 E-value=68 Score=24.98 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=15.6
Q ss_pred HHHHHHHhhccCCEEEEE
Q 035717 17 MLDAVLINMKIGGQIAVC 34 (125)
Q Consensus 17 ~~~~~~~~l~~~G~~v~~ 34 (125)
.+..+.+.|+|+|+++..
T Consensus 519 iLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 519 GLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred HHHHHHHHcCCCcEEEEE
Confidence 467888999999999886
No 270
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=36.46 E-value=51 Score=21.04 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=14.8
Q ss_pred HHHHHHhhccCCEEEEEcccc
Q 035717 18 LDAVLINMKIGGQIAVCGMIS 38 (125)
Q Consensus 18 ~~~~~~~l~~~G~~v~~g~~~ 38 (125)
.+..+++++.+|+++.++...
T Consensus 118 ~~~~~~~~~~~~~iv~~ss~~ 138 (238)
T PRK05786 118 VNASLRFLKEGSSIVLVSSMS 138 (238)
T ss_pred HHHHHHHHhcCCEEEEEecch
Confidence 445566777789999887643
No 271
>PRK01581 speE spermidine synthase; Validated
Probab=36.45 E-value=65 Score=23.11 Aligned_cols=19 Identities=5% Similarity=0.141 Sum_probs=15.5
Q ss_pred HHHHHHHhhccCCEEEEEc
Q 035717 17 MLDAVLINMKIGGQIAVCG 35 (125)
Q Consensus 17 ~~~~~~~~l~~~G~~v~~g 35 (125)
.+..+.+.|+++|.++.-.
T Consensus 250 Fy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 250 LFARIATFLTEDGAFVCQS 268 (374)
T ss_pred HHHHHHHhcCCCcEEEEec
Confidence 4678888999999987754
No 272
>PTZ00146 fibrillarin; Provisional
Probab=36.16 E-value=47 Score=22.91 Aligned_cols=29 Identities=21% Similarity=0.355 Sum_probs=20.0
Q ss_pred eeeEEEeCCchH----H-HHHHHHhhccCCEEEE
Q 035717 5 GIDIYFENVGGK----M-LDAVLINMKIGGQIAV 33 (125)
Q Consensus 5 g~Dvv~d~~g~~----~-~~~~~~~l~~~G~~v~ 33 (125)
.+|+||-.+... . ...+...|+++|+++.
T Consensus 202 ~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI 235 (293)
T PTZ00146 202 MVDVIFADVAQPDQARIVALNAQYFLKNGGHFII 235 (293)
T ss_pred CCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEE
Confidence 479988655422 1 3356668999999887
No 273
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=35.85 E-value=21 Score=24.87 Aligned_cols=33 Identities=18% Similarity=0.059 Sum_probs=20.2
Q ss_pred ceeeEEEeCCch--HHHHHHHHhhccCCEEEEEcc
Q 035717 4 EGIDIYFENVGG--KMLDAVLINMKIGGQIAVCGM 36 (125)
Q Consensus 4 ~g~Dvv~d~~g~--~~~~~~~~~l~~~G~~v~~g~ 36 (125)
.++|||++|+|- ..+..--.+-.-.|.++.+-.
T Consensus 182 ~~~DVivNCtGL~a~~L~gDd~~yPiRGqVl~V~A 216 (342)
T KOG3923|consen 182 PEYDVIVNCTGLGAGKLAGDDDLYPIRGQVLKVDA 216 (342)
T ss_pred CCCcEEEECCccccccccCCcceeeccceEEEeeC
Confidence 689999999982 233222123344577777643
No 274
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=35.70 E-value=43 Score=22.44 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=21.3
Q ss_pred ceeeEEEeCCc---------hHHHHHHHHhhccCCEEEE
Q 035717 4 EGIDIYFENVG---------GKMLDAVLINMKIGGQIAV 33 (125)
Q Consensus 4 ~g~Dvv~d~~g---------~~~~~~~~~~l~~~G~~v~ 33 (125)
+.+|+|+..-. ...+....++|+|+|.++.
T Consensus 202 ~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~l 240 (264)
T smart00138 202 GDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFL 240 (264)
T ss_pred CCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 45899885211 1257788889999999885
No 275
>PF10369 ALS_ss_C: Small subunit of acetolactate synthase; InterPro: IPR019455 This entry represents the C-terminal domain of the small subunit of acetolactate synthase (the N-terminal domain being an ACT domain). Acetolactate synthase is a tetrameric enzyme, composed of two large and two small subunits, which catalyses the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides []. ; PDB: 2F1F_B 2FGC_A 2PC6_A.
Probab=35.63 E-value=41 Score=17.84 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=17.9
Q ss_pred EEEeCCchH-HHHHHHHhhccCCE
Q 035717 8 IYFENVGGK-MLDAVLINMKIGGQ 30 (125)
Q Consensus 8 vv~d~~g~~-~~~~~~~~l~~~G~ 30 (125)
++++.+|.+ .++..++.|+++|-
T Consensus 38 ~iie~tG~~~kid~fi~~l~~~gi 61 (75)
T PF10369_consen 38 IIIELTGTPEKIDAFIKLLKPFGI 61 (75)
T ss_dssp EEEEEEE-HHHHHHHHHHSTGGGE
T ss_pred EEEEEcCCHHHHHHHHHHhhhcCC
Confidence 468888864 58899999999884
No 276
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=35.15 E-value=72 Score=20.39 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=22.8
Q ss_pred ceeeEEEeCCc-------hHHHHHHHHhhccCCEEEEEcc
Q 035717 4 EGIDIYFENVG-------GKMLDAVLINMKIGGQIAVCGM 36 (125)
Q Consensus 4 ~g~Dvv~d~~g-------~~~~~~~~~~l~~~G~~v~~g~ 36 (125)
..+|+|+-..+ ...+..+.++|+++|+++.+..
T Consensus 120 ~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 120 NSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred CCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence 34788764221 1257788899999999987654
No 277
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=35.12 E-value=49 Score=21.76 Aligned_cols=35 Identities=17% Similarity=0.258 Sum_probs=24.9
Q ss_pred ceeeEEEeCCc---h---HHHHHHHHhhccCCEEEEEcccc
Q 035717 4 EGIDIYFENVG---G---KMLDAVLINMKIGGQIAVCGMIS 38 (125)
Q Consensus 4 ~g~Dvv~d~~g---~---~~~~~~~~~l~~~G~~v~~g~~~ 38 (125)
+-+|+++=|.. . +.+..+.++|+++|.+.+.-..+
T Consensus 121 ~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~S 161 (219)
T PF05148_consen 121 ESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKS 161 (219)
T ss_dssp T-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred CceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecc
Confidence 45888876654 2 25789999999999887765544
No 278
>PRK08324 short chain dehydrogenase; Validated
Probab=34.97 E-value=69 Score=24.73 Aligned_cols=35 Identities=29% Similarity=0.369 Sum_probs=24.0
Q ss_pred ceeeEEEeCCch--------------------------HHHHHHHHhhcc---CCEEEEEcccc
Q 035717 4 EGIDIYFENVGG--------------------------KMLDAVLINMKI---GGQIAVCGMIS 38 (125)
Q Consensus 4 ~g~Dvv~d~~g~--------------------------~~~~~~~~~l~~---~G~~v~~g~~~ 38 (125)
.++|++|+++|. ...+.+++.++. +|+++.++...
T Consensus 497 g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~ 560 (681)
T PRK08324 497 GGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKN 560 (681)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCcc
Confidence 368999999982 123455666666 68999987643
No 279
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=34.89 E-value=79 Score=21.15 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=21.2
Q ss_pred ceeeEEE-eCCch---HHHHHHHHhhccCCEEEE
Q 035717 4 EGIDIYF-ENVGG---KMLDAVLINMKIGGQIAV 33 (125)
Q Consensus 4 ~g~Dvv~-d~~g~---~~~~~~~~~l~~~G~~v~ 33 (125)
..+|.|| |+--. ..++.+++.|++||.++.
T Consensus 155 ~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 155 GTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred CcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEE
Confidence 4688887 43332 257788899999998764
No 280
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=34.79 E-value=59 Score=20.95 Aligned_cols=31 Identities=19% Similarity=0.194 Sum_probs=21.9
Q ss_pred ceeeEEEe-----CCch--HHHHHHHHhhccCCEEEEE
Q 035717 4 EGIDIYFE-----NVGG--KMLDAVLINMKIGGQIAVC 34 (125)
Q Consensus 4 ~g~Dvv~d-----~~g~--~~~~~~~~~l~~~G~~v~~ 34 (125)
..+|+|+- ..+. ..+..+.+.|+++|+++..
T Consensus 113 ~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~ 150 (233)
T PRK05134 113 GQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFS 150 (233)
T ss_pred CCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEE
Confidence 46888853 3332 2467888999999998754
No 281
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=34.07 E-value=61 Score=22.61 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=20.6
Q ss_pred ceeeEEEeCCchHHHHH-HHHhhccCCEEEEEc
Q 035717 4 EGIDIYFENVGGKMLDA-VLINMKIGGQIAVCG 35 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~~~~-~~~~l~~~G~~v~~g 35 (125)
.++|+||.|+|...-.. +-+.++.+.+++.++
T Consensus 62 ~~vDvVf~A~g~g~s~~~~~~~~~~G~~VIDlS 94 (334)
T PRK14874 62 SGVDIALFSAGGSVSKKYAPKAAAAGAVVIDNS 94 (334)
T ss_pred cCCCEEEECCChHHHHHHHHHHHhCCCEEEECC
Confidence 47999999999764333 333445555666554
No 282
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=33.75 E-value=30 Score=20.10 Aligned_cols=18 Identities=11% Similarity=0.298 Sum_probs=14.9
Q ss_pred HHHHHHHhhccCCEEEEE
Q 035717 17 MLDAVLINMKIGGQIAVC 34 (125)
Q Consensus 17 ~~~~~~~~l~~~G~~v~~ 34 (125)
.+......|+|||.++.=
T Consensus 26 ~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 26 FFRRIYSLLRPGGILILE 43 (110)
T ss_dssp HHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHhhCCCCEEEEe
Confidence 467888899999999863
No 283
>PRK06274 indolepyruvate oxidoreductase subunit B; Reviewed
Probab=33.36 E-value=76 Score=20.05 Aligned_cols=30 Identities=23% Similarity=0.276 Sum_probs=20.6
Q ss_pred ceeeEEEeCCchHHHHHHHHhhccCCEEEEE
Q 035717 4 EGIDIYFENVGGKMLDAVLINMKIGGQIAVC 34 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~ 34 (125)
..+|+++- .-...+...++.++++|.++.-
T Consensus 66 ~~~D~lva-~d~~~~~~~~~~l~~gg~ii~n 95 (197)
T PRK06274 66 GQADLLLA-LEPAEVARNLHFLKKGGKIIVN 95 (197)
T ss_pred CCCCEEEE-cCHHHHHHHHhhcCCCcEEEEE
Confidence 46788773 3333456677889999987743
No 284
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=33.29 E-value=56 Score=21.80 Aligned_cols=31 Identities=16% Similarity=0.290 Sum_probs=19.5
Q ss_pred eeeEEEeCCchHH-HHHHHHhhccCCEEEEEcc
Q 035717 5 GIDIYFENVGGKM-LDAVLINMKIGGQIAVCGM 36 (125)
Q Consensus 5 g~Dvv~d~~g~~~-~~~~~~~l~~~G~~v~~g~ 36 (125)
++|+|+|++.... .+.+..+++ .|.-+.+|.
T Consensus 60 ~~DvVid~t~p~~~~~~~~~al~-~G~~vvigt 91 (257)
T PRK00048 60 DADVLIDFTTPEATLENLEFALE-HGKPLVIGT 91 (257)
T ss_pred CCCEEEECCCHHHHHHHHHHHHH-cCCCEEEEC
Confidence 5899999887654 444444554 455455663
No 285
>TIGR00291 RNA_SBDS rRNA metabolism protein, SBDS family. This protein family, possibly universal in both archaea and eukaryotes, appears to be involved in (ribosomal) RNA metabolism. Mutations in the human ortholog are associated with Shwachman-Bodian-Diamond syndrome.
Probab=33.28 E-value=73 Score=21.20 Aligned_cols=37 Identities=16% Similarity=-0.113 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHcCceeeeeecccchhHHHHHHHHHh
Q 035717 74 PKFLEMIIPHIKWAKIVYIEDTAEGLESALAARVGLF 110 (125)
Q Consensus 74 ~~~~~~~~~l~~~g~i~~~~~~~~~l~~~~~a~~~~~ 110 (125)
.+...+++.++.+..+.|.....+|...++.|++.++
T Consensus 97 e~k~~~Ii~~Ia~~~VnP~T~~P~p~~rIE~Am~e~~ 133 (231)
T TIGR00291 97 EKKRNQIINIISRNTINPQTKKPHPPTRIEKALEEAK 133 (231)
T ss_pred HHHHHHHHHHHHHhCcCCCCCCCCCHHHHHHHHHhcC
Confidence 4567888999999999987777789999999988754
No 286
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.17 E-value=71 Score=16.19 Aligned_cols=25 Identities=8% Similarity=-0.003 Sum_probs=18.7
Q ss_pred eeeEEEeCCchHHHHHHHHhhccCC
Q 035717 5 GIDIYFENVGGKMLDAVLINMKIGG 29 (125)
Q Consensus 5 g~Dvv~d~~g~~~~~~~~~~l~~~G 29 (125)
.+.+.+++.+.+..+...+.|+..|
T Consensus 39 ~v~v~ie~~~~~~~~~i~~~L~~~G 63 (68)
T cd04885 39 RVLVGIQVPDREDLAELKERLEALG 63 (68)
T ss_pred EEEEEEEeCCHHHHHHHHHHHHHcC
Confidence 3566788887777778888887776
No 287
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=33.06 E-value=81 Score=22.61 Aligned_cols=33 Identities=9% Similarity=0.056 Sum_probs=24.2
Q ss_pred ceeeEEEeCCchHHHHHHHHhhccCCEEEEEcc
Q 035717 4 EGIDIYFENVGGKMLDAVLINMKIGGQIAVCGM 36 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~ 36 (125)
.++|+||-+.+..........++.+-++|.++.
T Consensus 103 ~~~DvVf~Alp~~~s~~i~~~~~~g~~VIDlSs 135 (381)
T PLN02968 103 SDVDAVFCCLPHGTTQEIIKALPKDLKIVDLSA 135 (381)
T ss_pred cCCCEEEEcCCHHHHHHHHHHHhCCCEEEEcCc
Confidence 478999999998765555565666667888764
No 288
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=32.81 E-value=57 Score=21.81 Aligned_cols=32 Identities=13% Similarity=0.343 Sum_probs=22.8
Q ss_pred eeeEEEeC--C---c--h--HHHHHHHHhhccCCEEEEEcc
Q 035717 5 GIDIYFEN--V---G--G--KMLDAVLINMKIGGQIAVCGM 36 (125)
Q Consensus 5 g~Dvv~d~--~---g--~--~~~~~~~~~l~~~G~~v~~g~ 36 (125)
.+|+|+.. . + . ..+..+.+.|+|+|+++....
T Consensus 117 ~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 117 TFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred CeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 58998852 1 2 1 246788899999999987643
No 289
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=32.63 E-value=53 Score=21.37 Aligned_cols=36 Identities=22% Similarity=0.304 Sum_probs=25.2
Q ss_pred CceeeEEEeCC-----c----hHHHHHHHHhhccCCEEEEEcccc
Q 035717 3 PEGIDIYFENV-----G----GKMLDAVLINMKIGGQIAVCGMIS 38 (125)
Q Consensus 3 ~~g~Dvv~d~~-----g----~~~~~~~~~~l~~~G~~v~~g~~~ 38 (125)
+..+|.||..- . ...+..+-+.|+++|.++.||-..
T Consensus 100 ~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~ 144 (204)
T PF06080_consen 100 PESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFN 144 (204)
T ss_pred CCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcc
Confidence 34688887421 1 124677778999999999999643
No 290
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=32.62 E-value=1.3e+02 Score=19.03 Aligned_cols=31 Identities=16% Similarity=0.288 Sum_probs=19.6
Q ss_pred EEEeCCc---hHHHHHHHHhhcc-CCEEEEEcccc
Q 035717 8 IYFENVG---GKMLDAVLINMKI-GGQIAVCGMIS 38 (125)
Q Consensus 8 vv~d~~g---~~~~~~~~~~l~~-~G~~v~~g~~~ 38 (125)
+|+|=++ ...+...++.+.. +.+++.+|...
T Consensus 97 liVDEasmv~~~~~~~ll~~~~~~~~klilvGD~~ 131 (196)
T PF13604_consen 97 LIVDEASMVDSRQLARLLRLAKKSGAKLILVGDPN 131 (196)
T ss_dssp EEESSGGG-BHHHHHHHHHHS-T-T-EEEEEE-TT
T ss_pred EEEecccccCHHHHHHHHHHHHhcCCEEEEECCcc
Confidence 4667444 3567778888877 77999998743
No 291
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=32.19 E-value=67 Score=19.90 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=17.2
Q ss_pred EEEeCCchH-HHHHHHHhhccCCEEEEE
Q 035717 8 IYFENVGGK-MLDAVLINMKIGGQIAVC 34 (125)
Q Consensus 8 vv~d~~g~~-~~~~~~~~l~~~G~~v~~ 34 (125)
++++.+|.+ -....++.|+++| +..+
T Consensus 119 ~~ie~tG~~~ki~~~~~~l~~~g-i~e~ 145 (157)
T TIGR00119 119 YTVEVTGDSDKIDAFLELLRPFG-IKEV 145 (157)
T ss_pred EEEEEcCCHHHHHHHHHHhhhcC-CEEE
Confidence 356777754 4777788888887 4444
No 292
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=32.19 E-value=1.1e+02 Score=20.90 Aligned_cols=45 Identities=13% Similarity=0.003 Sum_probs=30.2
Q ss_pred HHHHHHHHHcCceeeeeec--------ccchhHHHHHHHHHhcCCCcCeEEEEe
Q 035717 77 LEMIIPHIKWAKIVYIEDT--------AEGLESALAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 77 ~~~~~~l~~~g~i~~~~~~--------~~~l~~~~~a~~~~~~~~~~gkvvi~~ 122 (125)
+.++...+.+|++...... .-.-+++-+|++.|.+.+ .|+.+++-
T Consensus 220 ~~dI~~aia~g~~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~n-VGRLlV~d 272 (294)
T COG2524 220 LSDIAKAIANGNLDAKVSDYMRKNVITINEDEDIYDAIRLMNKNN-VGRLLVTD 272 (294)
T ss_pred HHHHHHHHHcCCccccHHHHhccCCceEcCchhHHHHHHHHHhcC-cceEEEEc
Confidence 5667777778776654322 134577899999888754 68877764
No 293
>PRK13760 putative RNA-associated protein; Provisional
Probab=32.09 E-value=75 Score=21.15 Aligned_cols=38 Identities=13% Similarity=-0.116 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHcCceeeeeecccchhHHHHHHHHHh
Q 035717 73 YPKFLEMIIPHIKWAKIVYIEDTAEGLESALAARVGLF 110 (125)
Q Consensus 73 ~~~~~~~~~~l~~~g~i~~~~~~~~~l~~~~~a~~~~~ 110 (125)
..+...+++.++.+.-+.|.....+|...++.|++.++
T Consensus 96 ~e~k~r~Ii~~Ia~~~vnP~T~~P~p~~rIE~Am~e~~ 133 (231)
T PRK13760 96 LEEKRRQIINFIARNAINPQTGLPHPPQRIENAMEEAR 133 (231)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcC
Confidence 34567888999999999988777789999999988753
No 294
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=31.91 E-value=69 Score=22.35 Aligned_cols=31 Identities=10% Similarity=0.093 Sum_probs=21.7
Q ss_pred ceeeEEEeC-----Cc--hHHHHHHHHhhccCCEEEEE
Q 035717 4 EGIDIYFEN-----VG--GKMLDAVLINMKIGGQIAVC 34 (125)
Q Consensus 4 ~g~Dvv~d~-----~g--~~~~~~~~~~l~~~G~~v~~ 34 (125)
+.||+|+-. +. ...+....++|+|+|+++..
T Consensus 197 ~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liis 234 (322)
T PLN02396 197 RKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLS 234 (322)
T ss_pred CCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEE
Confidence 358888731 12 12577888999999998865
No 295
>PRK05954 precorrin-8X methylmutase; Provisional
Probab=31.78 E-value=1.1e+02 Score=19.94 Aligned_cols=39 Identities=18% Similarity=0.138 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHcCceeeeeec--ccchhHHHHHHHHHhcC
Q 035717 74 PKFLEMIIPHIKWAKIVYIEDT--AEGLESALAARVGLFSG 112 (125)
Q Consensus 74 ~~~~~~~~~l~~~g~i~~~~~~--~~~l~~~~~a~~~~~~~ 112 (125)
+.++-++++++++|.++|.... ...|=...++-+.+.+.
T Consensus 131 PTAL~~l~eli~~g~~~PalVIg~PVGFV~A~ESKe~L~~~ 171 (203)
T PRK05954 131 PTALLALCQQIRAGRVKPSLVIGVPVGFVSVVEAKQALAQL 171 (203)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCcccCHHHHHHHHHhC
Confidence 5678999999999998876543 35666666666666543
No 296
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=31.76 E-value=53 Score=23.18 Aligned_cols=18 Identities=33% Similarity=0.456 Sum_probs=15.3
Q ss_pred HHHHHHHhhccCCEEEEE
Q 035717 17 MLDAVLINMKIGGQIAVC 34 (125)
Q Consensus 17 ~~~~~~~~l~~~G~~v~~ 34 (125)
.+..+++.+++||++|+.
T Consensus 270 iL~~a~~~lk~GG~LVYS 287 (355)
T COG0144 270 ILAAALKLLKPGGVLVYS 287 (355)
T ss_pred HHHHHHHhcCCCCEEEEE
Confidence 367889999999999975
No 297
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=31.72 E-value=98 Score=19.66 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=24.0
Q ss_pred CceeeEEEe-CCch--HHHHHHHHhhccCCEEEEEcc
Q 035717 3 PEGIDIYFE-NVGG--KMLDAVLINMKIGGQIAVCGM 36 (125)
Q Consensus 3 ~~g~Dvv~d-~~g~--~~~~~~~~~l~~~G~~v~~g~ 36 (125)
+..+|+|+- +++. ..+..+..+++++|+++.+-+
T Consensus 113 ~~~fd~v~aRAv~~l~~l~~~~~~~l~~~G~~l~~KG 149 (184)
T PF02527_consen 113 RESFDVVTARAVAPLDKLLELARPLLKPGGRLLAYKG 149 (184)
T ss_dssp TT-EEEEEEESSSSHHHHHHHHGGGEEEEEEEEEEES
T ss_pred CCCccEEEeehhcCHHHHHHHHHHhcCCCCEEEEEcC
Confidence 457888886 5553 356777788999999888743
No 298
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=31.62 E-value=79 Score=21.95 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=24.9
Q ss_pred CceeeEEEeCCc-h--H---HHHHHHHhhccCCEEEEEccc
Q 035717 3 PEGIDIYFENVG-G--K---MLDAVLINMKIGGQIAVCGMI 37 (125)
Q Consensus 3 ~~g~Dvv~d~~g-~--~---~~~~~~~~l~~~G~~v~~g~~ 37 (125)
+.++|.++--.+ + + .+.++++++.++|.++.+|..
T Consensus 35 ~~~~d~~l~~~pK~~~e~e~qLa~ll~~~~~g~~i~v~g~~ 75 (300)
T COG2813 35 PDDFDAVLLYWPKHKAEAEFQLAQLLARLPPGGEIVVVGEK 75 (300)
T ss_pred cCCCCEEEEEccCchHHHHHHHHHHHhhCCCCCeEEEEecc
Confidence 345677664333 1 1 477899999999999999864
No 299
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=31.48 E-value=91 Score=22.75 Aligned_cols=31 Identities=13% Similarity=0.360 Sum_probs=22.7
Q ss_pred eeeEEEeCCc-------hHHHHHHHHhhccCCEEEEEc
Q 035717 5 GIDIYFENVG-------GKMLDAVLINMKIGGQIAVCG 35 (125)
Q Consensus 5 g~Dvv~d~~g-------~~~~~~~~~~l~~~G~~v~~g 35 (125)
.+|+|+..-. ...+..+.+.|+|+|+++..-
T Consensus 332 ~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 332 SFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred CEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 4899985321 125788999999999988653
No 300
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=31.29 E-value=89 Score=22.35 Aligned_cols=32 Identities=19% Similarity=0.211 Sum_probs=22.5
Q ss_pred ceeeEEEe-----CCch----HHHHHHHHhhccCCEEEEEc
Q 035717 4 EGIDIYFE-----NVGG----KMLDAVLINMKIGGQIAVCG 35 (125)
Q Consensus 4 ~g~Dvv~d-----~~g~----~~~~~~~~~l~~~G~~v~~g 35 (125)
..+|.|+. .+|. ..++...++|+|+|+++...
T Consensus 227 ~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 227 GQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred CCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 35788763 3343 24678888999999988753
No 301
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=30.90 E-value=48 Score=22.73 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=21.9
Q ss_pred ceeeEEEe--CC---c----hHHHHHHHHhhccCCEEEEEcc
Q 035717 4 EGIDIYFE--NV---G----GKMLDAVLINMKIGGQIAVCGM 36 (125)
Q Consensus 4 ~g~Dvv~d--~~---g----~~~~~~~~~~l~~~G~~v~~g~ 36 (125)
.++|+||- .. . ...+....++|+|+|.+ .+|-
T Consensus 222 ~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L-~lG~ 262 (287)
T PRK10611 222 GPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLL-FAGH 262 (287)
T ss_pred CCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEE-EEeC
Confidence 57899884 11 1 12578888999999965 4665
No 302
>PRK08618 ornithine cyclodeaminase; Validated
Probab=30.15 E-value=33 Score=23.76 Aligned_cols=34 Identities=24% Similarity=0.177 Sum_probs=24.8
Q ss_pred ceeeEEEeCCchHHHHHHHHhhccCCEEEEEcccc
Q 035717 4 EGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMIS 38 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~ 38 (125)
.+.|+|+.|++...-.-. +.++++-++..+|...
T Consensus 191 ~~aDiVi~aT~s~~p~i~-~~l~~G~hV~~iGs~~ 224 (325)
T PRK08618 191 EEADIIVTVTNAKTPVFS-EKLKKGVHINAVGSFM 224 (325)
T ss_pred hcCCEEEEccCCCCcchH-HhcCCCcEEEecCCCC
Confidence 368999998875432223 8889988988898743
No 303
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=30.11 E-value=62 Score=23.46 Aligned_cols=17 Identities=24% Similarity=0.427 Sum_probs=14.9
Q ss_pred HHHHHHhhccCCEEEEE
Q 035717 18 LDAVLINMKIGGQIAVC 34 (125)
Q Consensus 18 ~~~~~~~l~~~G~~v~~ 34 (125)
+..+++.|+++|++|..
T Consensus 367 L~~a~~~lkpgG~lvys 383 (434)
T PRK14901 367 LESLAPLLKPGGTLVYA 383 (434)
T ss_pred HHHHHHhcCCCCEEEEE
Confidence 67889999999999865
No 304
>PF01383 CpcD: CpcD/allophycocyanin linker domain; InterPro: IPR008213 Ferredoxin-NADP(+) oxydoreductase (FNR) (EC=1.18.1.2) transfers electrons from ferredoxin (or flavodoxin) to NADP(+) to generate NADPH. In eucaryotes, the nuclear-encoded, chloroplast-targeted enzyme contains two domains: an FAD-binding domain (see PDOC51384 from PROSITEDOC) and an NADP(+)-binding domain. With the exception of Gloeobacter violaceus PCC 7421, the predicted sequences of all cyanobacterial petH genes, encoding FNR, correspond to a protein containing three domains. Two domains at the C terminus correspond to the FAD- and NADP(+)-binding domains of higher plants FNR protein, which compose the catalytic domains of the enzyme. The N-terminal domain is similar to phycobilisome (PBS)-associated linker proteins from numerous cyanobacteria [, , ] and is associated with: - CpcD, the phycocyanin (PC)-associated, rod-capping, linker polypeptide of PBS. The similarity spans nearly the entire sequence of this linker class. - CpcC, the PC-associated rod linker polypeptide. The similarity is confined only to the C terminus of this linker class. - ApcC, the allophycocyanin (APC)-associated, core linker polypeptide. The similarity only correspond to about half of the molecule. The CpcD-like domain has an elongated shape and consists of a three-stranded beta-sheet, two alpha-helices, one of which has only about one turn, and the connecting random coil segments [].; GO: 0030089 phycobilisome; PDB: 1B33_O.
Probab=30.08 E-value=80 Score=15.78 Aligned_cols=21 Identities=14% Similarity=-0.029 Sum_probs=15.3
Q ss_pred cchhHHHHHHHHHhcCCCcCeEE
Q 035717 97 EGLESALAARVGLFSGRNLGKQV 119 (125)
Q Consensus 97 ~~l~~~~~a~~~~~~~~~~gkvv 119 (125)
.|++++.+.++.+...+ ||++
T Consensus 31 Vpy~~ls~~~q~I~r~G--GkIv 51 (56)
T PF01383_consen 31 VPYSQLSQEMQRINRQG--GKIV 51 (56)
T ss_dssp EEHHHHHHHHHHHHHCT---EEE
T ss_pred EcHHHhHHHHHHHHHCC--CEEE
Confidence 78999999999887643 4543
No 305
>PF02570 CbiC: Precorrin-8X methylmutase; InterPro: IPR003722 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiC and CobH precorrin-8X methylmutase (also known as precorrin isomerase, 5.4.1.2 from EC), both as stand-alone enzymes and when CobJ forms part of a bifunctional enzyme. CobH and CbiC from the aerobic and anaerobic pathways, respectively, catalyse a methyl rearrangement in precorrin-8 that moves the methyl group from C-11 to C-12 to produce hydrogenobyrinic acid []. Hydrogenobyrinic acid now contains all the major framework alterations associated with corrin synthesis []. CobH and CbiC can sometimes be fused to other enzymes in the cobalamin pathway to make bifunctional enzymes: e.g., with CobJ/CibH (precorrin-3B C17-methylase/precorrin isomerase, IPR014422 from INTERPRO) and with CbiX (precorrin isomerase, IPR012067 from INTERPRO).; GO: 0016993 precorrin-8X methylmutase activity, 0009236 cobalamin biosynthetic process; PDB: 1V9C_B 1I1H_A 1F2V_A 1OU0_B 2AFV_A 2AFR_A 3E7D_D.
Probab=30.07 E-value=95 Score=20.14 Aligned_cols=40 Identities=15% Similarity=0.104 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHcCceeeeeec--ccchhHHHHHHHHHhcCC
Q 035717 74 PKFLEMIIPHIKWAKIVYIEDT--AEGLESALAARVGLFSGR 113 (125)
Q Consensus 74 ~~~~~~~~~l~~~g~i~~~~~~--~~~l~~~~~a~~~~~~~~ 113 (125)
+.++-++++++++|.++|.... ...|=.+.++-+.+.+..
T Consensus 129 PTAL~~ll~li~~~~~~PalVIg~PVGFV~A~ESKe~L~~~~ 170 (198)
T PF02570_consen 129 PTALFELLELIEEGGVRPALVIGVPVGFVGAAESKEALMQSG 170 (198)
T ss_dssp HHHHHHHHHHHHTTT-TTSEEEE---SSSSHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhcCCCCcEEEECCCcccCcHHHHHHHHhCC
Confidence 5679999999999999886544 356777778877777653
No 306
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=29.91 E-value=75 Score=22.30 Aligned_cols=32 Identities=28% Similarity=0.307 Sum_probs=20.4
Q ss_pred ceeeEEEeCCchHHHH-HHHHhhccCCEEEEEc
Q 035717 4 EGIDIYFENVGGKMLD-AVLINMKIGGQIAVCG 35 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~~~-~~~~~l~~~G~~v~~g 35 (125)
.++|++|.|+|...-. .+-+.++.+.+++...
T Consensus 60 ~~~D~v~~a~g~~~s~~~a~~~~~~G~~VID~s 92 (339)
T TIGR01296 60 EGIDIALFSAGGSVSKEFAPKAAKCGAIVIDNT 92 (339)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHCCCEEEECC
Confidence 4789999999976433 3334445555666554
No 307
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=29.70 E-value=72 Score=19.88 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=18.0
Q ss_pred EEEeCCchH-HHHHHHHhhccCCEEEEEc
Q 035717 8 IYFENVGGK-MLDAVLINMKIGGQIAVCG 35 (125)
Q Consensus 8 vv~d~~g~~-~~~~~~~~l~~~G~~v~~g 35 (125)
++++.+|.+ -.+..++.|+|+| +..+.
T Consensus 120 ~~iE~tG~~~ki~~~~~~l~~~g-i~e~~ 147 (161)
T PRK11895 120 LTIEVTGDSDKIDAFIDLLRPYG-IKEIV 147 (161)
T ss_pred EEEEEeCCHHHHHHHHHHhhhcC-CEEEE
Confidence 456777754 4777888888888 44443
No 308
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=29.63 E-value=99 Score=16.62 Aligned_cols=33 Identities=21% Similarity=0.301 Sum_probs=19.3
Q ss_pred ceeeEEEeCCch-HHHHHHHHhhc---cCCEEEEE-cc
Q 035717 4 EGIDIYFENVGG-KMLDAVLINMK---IGGQIAVC-GM 36 (125)
Q Consensus 4 ~g~Dvv~d~~g~-~~~~~~~~~l~---~~G~~v~~-g~ 36 (125)
.|+.++.|-.-+ ..+..+++.++ +.++++.+ |.
T Consensus 12 ~~~~vi~D~ahNp~s~~a~l~~l~~~~~~~~~i~V~G~ 49 (91)
T PF02875_consen 12 NGPTVIDDYAHNPDSIRALLEALKELYPKGRIIAVFGA 49 (91)
T ss_dssp TTEEEEEET--SHHHHHHHHHHHHHHCTTSEEEEEEEE
T ss_pred CCcEEEEECCCCHHHHHHHHHHHHHhccCCcEEEEEcc
Confidence 478899993333 34666666664 55766554 53
No 309
>PF08874 DUF1835: Domain of unknown function (DUF1835); InterPro: IPR014973 This group of proteins are functionally uncharacterised.
Probab=29.61 E-value=99 Score=17.82 Aligned_cols=31 Identities=19% Similarity=0.248 Sum_probs=24.1
Q ss_pred eeEEEeCCchHHHHHHHHhhccCCEEEEEcc
Q 035717 6 IDIYFENVGGKMLDAVLINMKIGGQIAVCGM 36 (125)
Q Consensus 6 ~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~ 36 (125)
+++++..+.+.++..+++.....|.++.+..
T Consensus 1 iHI~~g~s~a~sLk~a~~~~g~~~~Vi~~~d 31 (124)
T PF08874_consen 1 IHIVFGDSAAGSLKQALKQSGFEGDVICFRD 31 (124)
T ss_pred CeEecCcchHHHHHHHHHhcCCCCcEEEEeC
Confidence 3577776667788888887778999988854
No 310
>PRK06853 indolepyruvate oxidoreductase subunit beta; Reviewed
Probab=29.44 E-value=94 Score=19.72 Aligned_cols=29 Identities=21% Similarity=0.156 Sum_probs=20.1
Q ss_pred eeeEEEeCCchHHHHHHHHhhccCCEEEEE
Q 035717 5 GIDIYFENVGGKMLDAVLINMKIGGQIAVC 34 (125)
Q Consensus 5 g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~ 34 (125)
.+|+++-.- .......++-++++|.++.-
T Consensus 68 ~~D~lva~d-~~~~~~~~~~lk~gg~ii~n 96 (197)
T PRK06853 68 KADLLLAFE-PLEALRYLPYLKKGGKVVVN 96 (197)
T ss_pred CCCEEEEeC-HHHHHHHHHhcCCCcEEEEE
Confidence 578876333 34556777889999988754
No 311
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=29.13 E-value=64 Score=21.60 Aligned_cols=31 Identities=19% Similarity=0.288 Sum_probs=22.9
Q ss_pred eeeEEE-eCCch-HHHHHHHHhh-ccCCEEEEEc
Q 035717 5 GIDIYF-ENVGG-KMLDAVLINM-KIGGQIAVCG 35 (125)
Q Consensus 5 g~Dvv~-d~~g~-~~~~~~~~~l-~~~G~~v~~g 35 (125)
.+|.|| |-..- ..+..+.++| +++|+++.+.
T Consensus 113 ~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i~~fs 146 (247)
T PF08704_consen 113 DFDAVFLDLPDPWEAIPHAKRALKKPGGRICCFS 146 (247)
T ss_dssp SEEEEEEESSSGGGGHHHHHHHE-EEEEEEEEEE
T ss_pred cccEEEEeCCCHHHHHHHHHHHHhcCCceEEEEC
Confidence 467765 54332 4688999999 8999998884
No 312
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=29.00 E-value=78 Score=20.01 Aligned_cols=27 Identities=19% Similarity=0.149 Sum_probs=18.7
Q ss_pred EEEeCCchH-HHHHHHHhhccCCEEEEEc
Q 035717 8 IYFENVGGK-MLDAVLINMKIGGQIAVCG 35 (125)
Q Consensus 8 vv~d~~g~~-~~~~~~~~l~~~G~~v~~g 35 (125)
++++.+|.+ -+...++.|+++| +..+.
T Consensus 120 ~~ie~tG~~~ki~a~~~~l~~~g-i~e~~ 147 (174)
T CHL00100 120 LILEVTGDPGKIVAIEQLLEKFG-IIEIA 147 (174)
T ss_pred EEEEEcCCHHHHHHHHHHhhhcC-CEEEE
Confidence 467777754 4778888888888 44443
No 313
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=28.70 E-value=62 Score=23.19 Aligned_cols=18 Identities=28% Similarity=0.493 Sum_probs=14.8
Q ss_pred HHHHHHHhhccCCEEEEE
Q 035717 17 MLDAVLINMKIGGQIAVC 34 (125)
Q Consensus 17 ~~~~~~~~l~~~G~~v~~ 34 (125)
.+..+++.|++||++|.-
T Consensus 278 iL~rgl~lLk~GG~lVYS 295 (375)
T KOG2198|consen 278 ILRRGLRLLKVGGRLVYS 295 (375)
T ss_pred HHHHHHHHhcCCCEEEEe
Confidence 356788999999999974
No 314
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=28.48 E-value=1.3e+02 Score=21.69 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=24.7
Q ss_pred eee-EEEeCCchH----------HHHHHHHhhccCCEEEEEcccc
Q 035717 5 GID-IYFENVGGK----------MLDAVLINMKIGGQIAVCGMIS 38 (125)
Q Consensus 5 g~D-vv~d~~g~~----------~~~~~~~~l~~~G~~v~~g~~~ 38 (125)
+++ +++|..+-. .....++.|.++|+++.++...
T Consensus 82 ~~~~~~~d~~~~~~~~~l~~~~~~~~~~l~~l~~~griv~i~s~~ 126 (450)
T PRK08261 82 RFGALVFDATGITDPADLKALYEFFHPVLRSLAPCGRVVVLGRPP 126 (450)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCEEEEEcccc
Confidence 565 688877621 3456778889999999998643
No 315
>KOG2924 consensus Deoxyhypusine synthase [Posttranslational modification, protein turnover, chaperones]
Probab=28.17 E-value=59 Score=22.39 Aligned_cols=31 Identities=16% Similarity=0.397 Sum_probs=22.9
Q ss_pred ceeeEEEeCCchHHHHHHHHhhccC--CEEEEEc
Q 035717 4 EGIDIYFENVGGKMLDAVLINMKIG--GQIAVCG 35 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~~~~~~~~l~~~--G~~v~~g 35 (125)
+-+|+++-+.|| .-+..++||+|- |.|-.=|
T Consensus 123 ~mVdviVttaGG-vEEDlIKclaPTy~g~F~L~G 155 (366)
T KOG2924|consen 123 NMVDVIVTTAGG-VEEDLIKCLAPTYLGDFSLDG 155 (366)
T ss_pred cceeEEEecCCc-cHHHHHHHhCccceeeeecCh
Confidence 468999987776 556789999985 6665544
No 316
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=28.09 E-value=1e+02 Score=23.70 Aligned_cols=33 Identities=12% Similarity=0.185 Sum_probs=24.8
Q ss_pred eeE-EEe---CCchHHHHHHHHhhccCCEEEEEcccc
Q 035717 6 IDI-YFE---NVGGKMLDAVLINMKIGGQIAVCGMIS 38 (125)
Q Consensus 6 ~Dv-v~d---~~g~~~~~~~~~~l~~~G~~v~~g~~~ 38 (125)
.|+ |+| .++...+...++++++++|++.+|...
T Consensus 266 ~dvlIvDEaSMvd~~lm~~ll~al~~~~rlIlvGD~~ 302 (615)
T PRK10875 266 LDVLVVDEASMVDLPMMARLIDALPPHARVIFLGDRD 302 (615)
T ss_pred CCeEEEChHhcccHHHHHHHHHhcccCCEEEEecchh
Confidence 466 456 344456788899999999999999744
No 317
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=28.08 E-value=65 Score=23.84 Aligned_cols=17 Identities=18% Similarity=0.485 Sum_probs=14.0
Q ss_pred HHHHHHhhccCCEEEEE
Q 035717 18 LDAVLINMKIGGQIAVC 34 (125)
Q Consensus 18 ~~~~~~~l~~~G~~v~~ 34 (125)
+..+++.|+++|++|..
T Consensus 225 L~~A~~~LkpGG~LVYS 241 (470)
T PRK11933 225 IESAFHALKPGGTLVYS 241 (470)
T ss_pred HHHHHHHcCCCcEEEEE
Confidence 56778999999999764
No 318
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=27.87 E-value=79 Score=22.32 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=18.3
Q ss_pred eeeEEEeCCchHHHHHHHHhhccCCE
Q 035717 5 GIDIYFENVGGKMLDAVLINMKIGGQ 30 (125)
Q Consensus 5 g~Dvv~d~~g~~~~~~~~~~l~~~G~ 30 (125)
++|++|-|.|++.-......++..|.
T Consensus 66 ~~Divf~~ag~~~s~~~~p~~~~~G~ 91 (334)
T COG0136 66 DVDIVFFAAGGSVSKEVEPKAAEAGC 91 (334)
T ss_pred cCCEEEEeCchHHHHHHHHHHHHcCC
Confidence 68999999998755555555555553
No 319
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.75 E-value=67 Score=20.99 Aligned_cols=31 Identities=16% Similarity=0.189 Sum_probs=20.7
Q ss_pred CceeeEEEeCCc-hHHHHHHHHhhccCCEEEE
Q 035717 3 PEGIDIYFENVG-GKMLDAVLINMKIGGQIAV 33 (125)
Q Consensus 3 ~~g~Dvv~d~~g-~~~~~~~~~~l~~~G~~v~ 33 (125)
++.+|+|+|.+| |..-...+.-..|.--+|.
T Consensus 97 ~G~~DlivDlTGlGG~~Pe~L~~fnp~vfiVE 128 (254)
T COG4017 97 RGEVDLIVDLTGLGGIEPEFLAKFNPKVFIVE 128 (254)
T ss_pred CCceeEEEeccccCCCCHHHHhccCCceEEEE
Confidence 456999999988 4455566666666555544
No 320
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.35 E-value=46 Score=22.86 Aligned_cols=33 Identities=18% Similarity=0.134 Sum_probs=25.4
Q ss_pred ceeeEEEeCCchHHHHHHHHhhccCCEEEEEccc
Q 035717 4 EGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMI 37 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~ 37 (125)
+..|+++.++|.+.+-.. +.++++..++.+|..
T Consensus 201 ~~ADIvi~avG~p~~v~~-~~vk~gavVIDvGin 233 (285)
T PRK10792 201 RNADLLVVAVGKPGFIPG-EWIKPGAIVIDVGIN 233 (285)
T ss_pred hhCCEEEEcCCCcccccH-HHcCCCcEEEEcccc
Confidence 468999999997654222 678999999999864
No 321
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=27.23 E-value=1.1e+02 Score=16.39 Aligned_cols=32 Identities=19% Similarity=0.295 Sum_probs=24.0
Q ss_pred eeeEEEeCCchH------HHHHHHHhhccCCEEEEEcc
Q 035717 5 GIDIYFENVGGK------MLDAVLINMKIGGQIAVCGM 36 (125)
Q Consensus 5 g~Dvv~d~~g~~------~~~~~~~~l~~~G~~v~~g~ 36 (125)
-+|+.+|+.|-. ....+++-+++|+.+..+..
T Consensus 7 ~~~~~lD~~Gl~CP~Pll~~kk~l~~l~~G~~l~V~~d 44 (81)
T PRK00299 7 SPDHTLDALGLRCPEPVMMVRKTVRNMQPGETLLIIAD 44 (81)
T ss_pred CcCeEEecCCCCCCHHHHHHHHHHHcCCCCCEEEEEeC
Confidence 478899988842 36788888888888777654
No 322
>PRK08286 cbiC cobalt-precorrin-8X methylmutase; Validated
Probab=27.19 E-value=1.5e+02 Score=19.54 Aligned_cols=39 Identities=13% Similarity=0.157 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHcCceeeeeec--ccchhHHHHHHHHHhcC
Q 035717 74 PKFLEMIIPHIKWAKIVYIEDT--AEGLESALAARVGLFSG 112 (125)
Q Consensus 74 ~~~~~~~~~l~~~g~i~~~~~~--~~~l~~~~~a~~~~~~~ 112 (125)
+.++-++++++++|.++|.... ...|=...++-+.+.+.
T Consensus 142 PTAL~~l~~li~~g~~~PalVIG~PVGFV~AaEsKe~L~~~ 182 (214)
T PRK08286 142 PTALFRLLEMVEHGQLQVDAVVGVPVGFVGAAESKEALTES 182 (214)
T ss_pred HHHHHHHHHHHHcCCCCCcEEEEeCCccccHHHHHHHHHhC
Confidence 5679999999999998876544 25566666666666543
No 323
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=27.16 E-value=83 Score=20.73 Aligned_cols=20 Identities=20% Similarity=0.489 Sum_probs=16.9
Q ss_pred HHHHHHHhhccCCEEEEEcc
Q 035717 17 MLDAVLINMKIGGQIAVCGM 36 (125)
Q Consensus 17 ~~~~~~~~l~~~G~~v~~g~ 36 (125)
.+....++|+|+|.++....
T Consensus 146 ~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 146 LLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HHHHHHHhcCCCCEEEEEEe
Confidence 57888999999999988753
No 324
>PRK14968 putative methyltransferase; Provisional
Probab=26.92 E-value=80 Score=19.34 Aligned_cols=18 Identities=39% Similarity=0.495 Sum_probs=14.8
Q ss_pred HHHHHHHhhccCCEEEEE
Q 035717 17 MLDAVLINMKIGGQIAVC 34 (125)
Q Consensus 17 ~~~~~~~~l~~~G~~v~~ 34 (125)
.++++.+.|+++|.++.+
T Consensus 130 ~i~~~~~~Lk~gG~~~~~ 147 (188)
T PRK14968 130 FLDEVGRYLKPGGRILLL 147 (188)
T ss_pred HHHHHHHhcCCCeEEEEE
Confidence 367888999999998765
No 325
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=26.34 E-value=60 Score=19.98 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=23.4
Q ss_pred ceeeEEEeCC----chH--------HHHHHHHhhccCCEEEEEcc
Q 035717 4 EGIDIYFENV----GGK--------MLDAVLINMKIGGQIAVCGM 36 (125)
Q Consensus 4 ~g~Dvv~d~~----g~~--------~~~~~~~~l~~~G~~v~~g~ 36 (125)
..+|+|+-.. |.. .+..+.+.|+++|++..+..
T Consensus 97 ~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 97 GKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 5789987532 221 36788899999999987754
No 326
>smart00843 Ftsk_gamma This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Probab=26.30 E-value=1.1e+02 Score=15.88 Aligned_cols=41 Identities=10% Similarity=-0.106 Sum_probs=24.1
Q ss_pred HHHHHHHHHHH-cCceeeeeecc---cchhHHHHHHHHHhcCCCc
Q 035717 75 KFLEMIIPHIK-WAKIVYIEDTA---EGLESALAARVGLFSGRNL 115 (125)
Q Consensus 75 ~~~~~~~~l~~-~g~i~~~~~~~---~~l~~~~~a~~~~~~~~~~ 115 (125)
.+++++++++. +++..+...++ +.+......++.|+..+.+
T Consensus 5 ~ly~~a~~~V~~~~~~S~S~lQR~~~IGynrAariid~lE~~GiV 49 (63)
T smart00843 5 ELYDEAVELVIETQKASTSLLQRRLRIGYNRAARLIDQLEEEGIV 49 (63)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHhcchhHHHHHHHHHHHCcCC
Confidence 34666776643 34444433322 6777777778887766543
No 327
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=26.09 E-value=1.2e+02 Score=16.88 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=21.7
Q ss_pred ceeeEEEeCCchHHHH-HHHHhhccCCEEEEEcc
Q 035717 4 EGIDIYFENVGGKMLD-AVLINMKIGGQIAVCGM 36 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~~~-~~~~~l~~~G~~v~~g~ 36 (125)
.|+|+||-+++.+.++ +.....+..|..+.+..
T Consensus 59 ~~~~lV~~at~d~~~n~~i~~~a~~~~i~vn~~D 92 (103)
T PF13241_consen 59 DGADLVFAATDDPELNEAIYADARARGILVNVVD 92 (103)
T ss_dssp TTESEEEE-SS-HHHHHHHHHHHHHTTSEEEETT
T ss_pred hhheEEEecCCCHHHHHHHHHHHhhCCEEEEECC
Confidence 3689999988876554 44445555888888754
No 328
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=25.96 E-value=45 Score=11.41 Aligned_cols=11 Identities=27% Similarity=0.157 Sum_probs=6.4
Q ss_pred hhHHHHHHHHH
Q 035717 99 LESALAARVGL 109 (125)
Q Consensus 99 l~~~~~a~~~~ 109 (125)
++++..|++.+
T Consensus 3 ~~~V~~aY~~l 13 (14)
T PF07709_consen 3 FEKVKNAYEQL 13 (14)
T ss_pred HHHHHHHHHhc
Confidence 45666666654
No 329
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=25.90 E-value=1.1e+02 Score=21.65 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=23.9
Q ss_pred eeeEEE-----eCCch--HHHHHHHHhhccCCEEEEEcc
Q 035717 5 GIDIYF-----ENVGG--KMLDAVLINMKIGGQIAVCGM 36 (125)
Q Consensus 5 g~Dvv~-----d~~g~--~~~~~~~~~l~~~G~~v~~g~ 36 (125)
.+|+|+ |++-+ +.++..-++|++||..+.+|-
T Consensus 259 ~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGP 297 (369)
T KOG2798|consen 259 SYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGP 297 (369)
T ss_pred ccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccc
Confidence 366664 55543 457788889999999999985
No 330
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=25.83 E-value=87 Score=19.95 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=21.3
Q ss_pred ceeeEEEe-----CCch--HHHHHHHHhhccCCEEEEE
Q 035717 4 EGIDIYFE-----NVGG--KMLDAVLINMKIGGQIAVC 34 (125)
Q Consensus 4 ~g~Dvv~d-----~~g~--~~~~~~~~~l~~~G~~v~~ 34 (125)
..+|+|+- .... ..+....+.|+++|.++..
T Consensus 111 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~ 148 (224)
T TIGR01983 111 KSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFS 148 (224)
T ss_pred CCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 46888864 2222 2467888899999998754
No 331
>PRK08285 cobH precorrin-8X methylmutase; Reviewed
Probab=25.71 E-value=1.5e+02 Score=19.47 Aligned_cols=38 Identities=13% Similarity=0.044 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHcCceeeeeec--ccchhHHHHHHHHHhc
Q 035717 74 PKFLEMIIPHIKWAKIVYIEDT--AEGLESALAARVGLFS 111 (125)
Q Consensus 74 ~~~~~~~~~l~~~g~i~~~~~~--~~~l~~~~~a~~~~~~ 111 (125)
+.++-++++++++|.++|.... ...|=...++-+.+.+
T Consensus 137 PTAL~~l~~li~~g~~~PalVIG~PVGFV~a~ESKe~L~~ 176 (208)
T PRK08285 137 PTALFRLLEMLDAGAPRPAAILGFPVGFVGAAESKDALAA 176 (208)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEeCCccccHHHHHHHHHh
Confidence 5678999999999998876543 3566667767666655
No 332
>PRK05575 cbiC precorrin-8X methylmutase; Validated
Probab=25.44 E-value=1.7e+02 Score=19.14 Aligned_cols=39 Identities=21% Similarity=-0.020 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHcCceeeeeec--ccchhHHHHHHHHHhcC
Q 035717 74 PKFLEMIIPHIKWAKIVYIEDT--AEGLESALAARVGLFSG 112 (125)
Q Consensus 74 ~~~~~~~~~l~~~g~i~~~~~~--~~~l~~~~~a~~~~~~~ 112 (125)
+.++-++++++++|.++|.... ...|=...|+-+.+.+.
T Consensus 136 PTAL~~l~~li~~g~~~PalVIG~PVGFV~A~ESKe~L~~~ 176 (204)
T PRK05575 136 PTALYKLKELIKEGKANPKFIIAVPVGFVGAAESKEELEKL 176 (204)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEeCCccccHHHHHHHHHhC
Confidence 5678999999999988775443 35666777777776553
No 333
>PRK08441 oorC 2-oxoglutarate-acceptor oxidoreductase subunit OorC; Reviewed
Probab=25.42 E-value=1.2e+02 Score=19.10 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=21.6
Q ss_pred ceeeEEEeCCchHHHHHHHHhhccCCEEEE
Q 035717 4 EGIDIYFENVGGKMLDAVLINMKIGGQIAV 33 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~ 33 (125)
..+|+++. ....++...++.++++|.++.
T Consensus 67 ~~~D~lva-l~~~~~~~~~~~l~~gg~ii~ 95 (183)
T PRK08441 67 GEIDFMLS-TAQISYNQFKSGVKEGGIIVV 95 (183)
T ss_pred CCCCEEEE-CCHHHHHHHHhhcCCCeEEEE
Confidence 36899884 444566778888999998874
No 334
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=25.41 E-value=1.2e+02 Score=17.53 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=22.3
Q ss_pred ceeeEEEeCCchHHHHHHHHhhccCCE
Q 035717 4 EGIDIYFENVGGKMLDAVLINMKIGGQ 30 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~~~~~~~~l~~~G~ 30 (125)
.++.+++++-..+.....++.|+.+|+
T Consensus 71 ~~~sl~i~~~~~ee~~~~f~~Ls~gG~ 97 (116)
T PF06983_consen 71 NNISLCIECDDEEEIDRIFDKLSEGGQ 97 (116)
T ss_dssp TTEEEEEEESSHHHHHHHHHHHHTTTE
T ss_pred CcEEEEEEcCCHHHHHHHHHHHHcCCC
Confidence 357778888777788999999999987
No 335
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=25.36 E-value=1.1e+02 Score=15.59 Aligned_cols=19 Identities=16% Similarity=0.296 Sum_probs=14.7
Q ss_pred HHHHHHHHhhccCCEEEEE
Q 035717 16 KMLDAVLINMKIGGQIAVC 34 (125)
Q Consensus 16 ~~~~~~~~~l~~~G~~v~~ 34 (125)
..+++..+-+..||+++..
T Consensus 51 ~~~~~l~~~v~~G~~lvl~ 69 (70)
T PF14258_consen 51 EEAEALLEWVEAGNTLVLA 69 (70)
T ss_pred HHHHHHHHHHHcCCEEEEe
Confidence 3456777888899999875
No 336
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=25.19 E-value=1.3e+02 Score=21.33 Aligned_cols=59 Identities=17% Similarity=0.207 Sum_probs=37.7
Q ss_pred ceeeEEEeCC---chH----HHHHHHHhhccCCEEEEEccccccCCCCCCCcccHHHHHhccceeeeee
Q 035717 4 EGIDIYFENV---GGK----MLDAVLINMKIGGQIAVCGMISQYNLDEPKGIHNLTRLILKQVRMEGFL 65 (125)
Q Consensus 4 ~g~Dvv~d~~---g~~----~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (125)
.++|+|+-+. |.+ .....+..++||..+|.++...+.|.+... +.......++++.|..
T Consensus 243 ~~~DivITTAlIPGrpAP~Lvt~~mv~sMkpGSViVDlAa~~GGNce~t~---pg~~v~~~gV~iig~~ 308 (356)
T COG3288 243 KEVDIVITTALIPGRPAPKLVTAEMVASMKPGSVIVDLAAETGGNCELTE---PGKVVTKNGVKIIGYT 308 (356)
T ss_pred cCCCEEEEecccCCCCCchhhHHHHHHhcCCCcEEEEehhhcCCCccccc---CCeEEEeCCeEEEeec
Confidence 4789999755 322 356888999999999999875554443211 1112234567777753
No 337
>PRK06264 cbiC precorrin-8X methylmutase; Validated
Probab=25.16 E-value=1.7e+02 Score=19.22 Aligned_cols=39 Identities=21% Similarity=0.083 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHcCceeeeeec--ccchhHHHHHHHHHhcC
Q 035717 74 PKFLEMIIPHIKWAKIVYIEDT--AEGLESALAARVGLFSG 112 (125)
Q Consensus 74 ~~~~~~~~~l~~~g~i~~~~~~--~~~l~~~~~a~~~~~~~ 112 (125)
+.++-++++++++|.++|.... ...|=...++-+.+.+.
T Consensus 137 PTAL~~l~~li~~g~~~PalVIg~PVGFV~A~ESKe~L~~~ 177 (210)
T PRK06264 137 PTALFEVIRLVKEEGIKPKLVVGVPVGFVKAAESKEALRNT 177 (210)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEeCCccccHHHHHHHHHhC
Confidence 5679999999999998876443 35666677776666553
No 338
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.15 E-value=49 Score=22.70 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=24.3
Q ss_pred ceeeEEEeCCchHH-HHHHHHhhccCCEEEEEccc
Q 035717 4 EGIDIYFENVGGKM-LDAVLINMKIGGQIAVCGMI 37 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~-~~~~~~~l~~~G~~v~~g~~ 37 (125)
+..|+|+.++|.+. +.. +.++++..++.+|..
T Consensus 200 ~~ADIVIsAvg~p~~i~~--~~vk~gavVIDvGi~ 232 (286)
T PRK14175 200 KDADVIVSAVGKPGLVTK--DVVKEGAVIIDVGNT 232 (286)
T ss_pred hhCCEEEECCCCCcccCH--HHcCCCcEEEEcCCC
Confidence 36899999999763 433 458888888999874
No 339
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=24.69 E-value=87 Score=20.44 Aligned_cols=26 Identities=15% Similarity=0.013 Sum_probs=21.7
Q ss_pred cchhHHHHHHHHHhcCCCcCeEEEEe
Q 035717 97 EGLESALAARVGLFSGRNLGKQVAAV 122 (125)
Q Consensus 97 ~~l~~~~~a~~~~~~~~~~gkvvi~~ 122 (125)
+..+|+.+||++..++...||-+|..
T Consensus 75 ~ay~DV~~AF~~yL~~~n~GRPfILa 100 (207)
T PF11288_consen 75 LAYSDVRAAFDYYLANYNNGRPFILA 100 (207)
T ss_pred hhHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 78999999999998888888766654
No 340
>PRK05953 precorrin-8X methylmutase; Validated
Probab=24.67 E-value=1.5e+02 Score=19.38 Aligned_cols=39 Identities=15% Similarity=0.065 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHcCceeeeeec--ccchhHHHHHHHHHhcC
Q 035717 74 PKFLEMIIPHIKWAKIVYIEDT--AEGLESALAARVGLFSG 112 (125)
Q Consensus 74 ~~~~~~~~~l~~~g~i~~~~~~--~~~l~~~~~a~~~~~~~ 112 (125)
+.++-++++++++|..+|.... ...|-...++-+.+.+.
T Consensus 129 PTAL~~l~~li~~g~~~PalVIG~PVGFV~AaESKe~L~~~ 169 (208)
T PRK05953 129 QTALTALVELVEAEEIRPALVIATPAGFIDADDAKERLQDS 169 (208)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCcccCcHHHHHHHHhC
Confidence 5678899999999988876544 35677777777777654
No 341
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=24.66 E-value=2.7e+02 Score=20.65 Aligned_cols=56 Identities=14% Similarity=0.097 Sum_probs=35.4
Q ss_pred hccceeeeeeeccccc-----chHHHHHHHHHHHHcCceeeeeecc-----cchhHHHHHHHHHhc
Q 035717 56 LKQVRMEGFLVSDYNH-----LYPKFLEMIIPHIKWAKIVYIEDTA-----EGLESALAARVGLFS 111 (125)
Q Consensus 56 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~g~i~~~~~~~-----~~l~~~~~a~~~~~~ 111 (125)
..+..+.|+.+..... ..++.+..++++..+++|+...+.. |+-.+..--++..+.
T Consensus 222 ~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~F~Sv~ev~~~ 287 (471)
T KOG0256|consen 222 KLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVFDKSEFRSVLEVRKD 287 (471)
T ss_pred HhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccccCccCceEHHHHhhc
Confidence 3467788877654322 2356788889999999999887664 444444444444433
No 342
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=24.64 E-value=33 Score=17.72 Aligned_cols=17 Identities=29% Similarity=0.114 Sum_probs=8.4
Q ss_pred HHHHhhccCCEEEEEcc
Q 035717 20 AVLINMKIGGQIAVCGM 36 (125)
Q Consensus 20 ~~~~~l~~~G~~v~~g~ 36 (125)
.....|+.+|.+|.+|.
T Consensus 6 DVqQLLK~fG~~IY~gd 22 (62)
T PF06014_consen 6 DVQQLLKKFGIIIYVGD 22 (62)
T ss_dssp HHHHHHHTTS-----S-
T ss_pred HHHHHHHHCCEEEEeCC
Confidence 34567999999999875
No 343
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=24.57 E-value=1.9e+02 Score=18.55 Aligned_cols=32 Identities=0% Similarity=-0.183 Sum_probs=22.4
Q ss_pred ceeeEEEeCCchHHHHHHHHhhccCCEEEEEc
Q 035717 4 EGIDIYFENVGGKMLDAVLINMKIGGQIAVCG 35 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g 35 (125)
.++|+|+-+++.+.++..+...+..+.++.+.
T Consensus 69 ~~adlViaaT~d~elN~~i~~~a~~~~lvn~~ 100 (202)
T PRK06718 69 VDAFLVIAATNDPRVNEQVKEDLPENALFNVI 100 (202)
T ss_pred CCceEEEEcCCCHHHHHHHHHHHHhCCcEEEC
Confidence 36799999999877666666555556666654
No 344
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=24.46 E-value=1.3e+02 Score=20.56 Aligned_cols=32 Identities=16% Similarity=0.272 Sum_probs=20.9
Q ss_pred CceeeEEEeCCchHHH-HHHHHhhccCCEEEEE
Q 035717 3 PEGIDIYFENVGGKML-DAVLINMKIGGQIAVC 34 (125)
Q Consensus 3 ~~g~Dvv~d~~g~~~~-~~~~~~l~~~G~~v~~ 34 (125)
....|+|+||.+...+ +.+..+|+.+--++.+
T Consensus 60 ~~~~DlVVE~A~~~av~e~~~~iL~~g~dlvv~ 92 (267)
T PRK13301 60 AWRPDLVVEAAGQQAIAEHAEGCLTAGLDMIIC 92 (267)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHhcCCCEEEE
Confidence 3567889998887654 4555566666555554
No 345
>COG2921 Uncharacterized conserved protein [Function unknown]
Probab=24.46 E-value=1.4e+02 Score=16.66 Aligned_cols=22 Identities=23% Similarity=0.083 Sum_probs=17.1
Q ss_pred cchhHHHHHHHHHhcCCCcCeEE
Q 035717 97 EGLESALAARVGLFSGRNLGKQV 119 (125)
Q Consensus 97 ~~l~~~~~a~~~~~~~~~~gkvv 119 (125)
-+.|+++..|+.+.+.... |.|
T Consensus 68 ~~~EQ~e~ly~eL~~~~~V-kmV 89 (90)
T COG2921 68 TNIEQVEALYRELRKHEIV-KMV 89 (90)
T ss_pred CCHHHHHHHHHHHhhCCce-EEe
Confidence 6899999999999876543 544
No 346
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=24.39 E-value=36 Score=21.98 Aligned_cols=34 Identities=15% Similarity=0.024 Sum_probs=23.8
Q ss_pred ceeeEEEeCCchHHHHHHHHhhccCCEEEEEccc
Q 035717 4 EGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMI 37 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~ 37 (125)
+..|+|+-++|.+.+.---+.++++..++.+|..
T Consensus 125 ~~ADIVIsAvG~~~~~i~~d~ik~GavVIDVGi~ 158 (197)
T cd01079 125 SQSDVVITGVPSPNYKVPTELLKDGAICINFASI 158 (197)
T ss_pred hhCCEEEEccCCCCCccCHHHcCCCcEEEEcCCC
Confidence 4578888888865441224568888888888863
No 347
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=24.15 E-value=1.5e+02 Score=22.76 Aligned_cols=34 Identities=12% Similarity=0.202 Sum_probs=25.0
Q ss_pred eeeE-EEe---CCchHHHHHHHHhhccCCEEEEEcccc
Q 035717 5 GIDI-YFE---NVGGKMLDAVLINMKIGGQIAVCGMIS 38 (125)
Q Consensus 5 g~Dv-v~d---~~g~~~~~~~~~~l~~~G~~v~~g~~~ 38 (125)
.+|+ |+| .++...+...++.++++.++|.+|...
T Consensus 259 ~~dvlIiDEaSMvd~~l~~~ll~al~~~~rlIlvGD~~ 296 (586)
T TIGR01447 259 PLDVLVVDEASMVDLPLMAKLLKALPPNTKLILLGDKN 296 (586)
T ss_pred cccEEEEcccccCCHHHHHHHHHhcCCCCEEEEECChh
Confidence 3566 456 344556778889999999999999643
No 348
>PRK03612 spermidine synthase; Provisional
Probab=24.09 E-value=1.3e+02 Score=22.55 Aligned_cols=33 Identities=12% Similarity=0.168 Sum_probs=22.5
Q ss_pred CceeeEEE-eCCc---h--------HHHHHHHHhhccCCEEEEEc
Q 035717 3 PEGIDIYF-ENVG---G--------KMLDAVLINMKIGGQIAVCG 35 (125)
Q Consensus 3 ~~g~Dvv~-d~~g---~--------~~~~~~~~~l~~~G~~v~~g 35 (125)
++.+|+|+ |... . +.++.+.+.|+++|.++.-.
T Consensus 371 ~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 371 AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 45789886 3221 0 24678889999999988653
No 349
>PHA01735 hypothetical protein
Probab=23.89 E-value=1.2e+02 Score=16.04 Aligned_cols=14 Identities=29% Similarity=-0.097 Sum_probs=6.8
Q ss_pred hHHHHHHHHHhcCC
Q 035717 100 ESALAARVGLFSGR 113 (125)
Q Consensus 100 ~~~~~a~~~~~~~~ 113 (125)
.|+..|.++++++.
T Consensus 33 aDL~AA~d~Lk~Nd 46 (76)
T PHA01735 33 ADLRAACDWLKSND 46 (76)
T ss_pred HHHHHHHHHHHHCC
Confidence 34445555555444
No 350
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=23.84 E-value=1.4e+02 Score=21.48 Aligned_cols=32 Identities=16% Similarity=0.308 Sum_probs=21.5
Q ss_pred ceeeEEEeCCchHHHHHHHHhhccCC---EEEEEc
Q 035717 4 EGIDIYFENVGGKMLDAVLINMKIGG---QIAVCG 35 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~~~~~~~~l~~~G---~~v~~g 35 (125)
.++|++|-|.|++.-......++..| .++...
T Consensus 63 ~~vDivffa~g~~~s~~~~p~~~~aG~~~~VIDnS 97 (366)
T TIGR01745 63 KALDIIITCQGGDYTNEIYPKLRESGWQGYWIDAA 97 (366)
T ss_pred cCCCEEEEcCCHHHHHHHHHHHHhCCCCeEEEECC
Confidence 47999999999876555555555555 455543
No 351
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=23.68 E-value=82 Score=21.37 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=21.1
Q ss_pred eeeEEE-----eCCchH----HHHHHHHhhccCCEEEEEc
Q 035717 5 GIDIYF-----ENVGGK----MLDAVLINMKIGGQIAVCG 35 (125)
Q Consensus 5 g~Dvv~-----d~~g~~----~~~~~~~~l~~~G~~v~~g 35 (125)
.+|.|+ +.+|.. .+..+-+.|+|+|+++.-.
T Consensus 127 ~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 127 KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 466654 455532 4778888999999987643
No 352
>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=23.64 E-value=1.5e+02 Score=19.23 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=22.8
Q ss_pred ceeeEEEeCCchH------------------HHHHHHHhhccCCEEEEEcccc
Q 035717 4 EGIDIYFENVGGK------------------MLDAVLINMKIGGQIAVCGMIS 38 (125)
Q Consensus 4 ~g~Dvv~d~~g~~------------------~~~~~~~~l~~~G~~v~~g~~~ 38 (125)
.++|+++.+.|.. ..+.+++.+++.|++|.++...
T Consensus 47 ~~iD~li~nAG~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~isS~~ 99 (241)
T PRK12428 47 GRIDALFNIAGVPGTAPVELVARVNFLGLRHLTEALLPRMAPGGAIVNVASLA 99 (241)
T ss_pred CCCeEEEECCCCCCCCCHHHhhhhchHHHHHHHHHHHHhccCCcEEEEeCcHH
Confidence 3578888877631 1244455566679999987644
No 353
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=23.60 E-value=1.8e+02 Score=18.64 Aligned_cols=31 Identities=16% Similarity=0.262 Sum_probs=23.7
Q ss_pred eeeEEEeCCch---------HHHHHHHHhhccCCEEEEEc
Q 035717 5 GIDIYFENVGG---------KMLDAVLINMKIGGQIAVCG 35 (125)
Q Consensus 5 g~Dvv~d~~g~---------~~~~~~~~~l~~~G~~v~~g 35 (125)
-+|+|+.++-- ..++..+..+..+|.+|++-
T Consensus 117 ~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 117 FFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred eeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 47888876642 25788888999999999874
No 354
>PRK08328 hypothetical protein; Provisional
Probab=23.06 E-value=1.3e+02 Score=19.68 Aligned_cols=13 Identities=15% Similarity=0.463 Sum_probs=10.2
Q ss_pred ceeeEEEeCCchH
Q 035717 4 EGIDIYFENVGGK 16 (125)
Q Consensus 4 ~g~Dvv~d~~g~~ 16 (125)
.++|+|+||+...
T Consensus 117 ~~~D~Vid~~d~~ 129 (231)
T PRK08328 117 KGVDVIVDCLDNF 129 (231)
T ss_pred hcCCEEEECCCCH
Confidence 3689999998864
No 355
>PF11079 YqhG: Bacterial protein YqhG of unknown function; InterPro: IPR024562 This family of putative proteins appears to be restricted to Firmicutes. Their function is not known.
Probab=23.01 E-value=79 Score=21.43 Aligned_cols=23 Identities=17% Similarity=0.158 Sum_probs=19.9
Q ss_pred CchHHHHHHHHhhccCCEEEEEc
Q 035717 13 VGGKMLDAVLINMKIGGQIAVCG 35 (125)
Q Consensus 13 ~g~~~~~~~~~~l~~~G~~v~~g 35 (125)
.|.+-+.+.+.+.+..|++|.+-
T Consensus 83 fGSpRL~QIF~sa~~~GrfvrLy 105 (260)
T PF11079_consen 83 FGSPRLHQIFQSAKKLGRFVRLY 105 (260)
T ss_pred cCChhHHHHHHHHHhcCCEEEEE
Confidence 46667999999999999999874
No 356
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=22.94 E-value=82 Score=14.62 Aligned_cols=18 Identities=22% Similarity=-0.062 Sum_probs=14.4
Q ss_pred HHHHHHHHHcCceeeeee
Q 035717 77 LEMIIPHIKWAKIVYIED 94 (125)
Q Consensus 77 ~~~~~~l~~~g~i~~~~~ 94 (125)
.+++.+++++|.+.+...
T Consensus 16 ~~el~~l~~~g~i~~~tl 33 (45)
T PF14237_consen 16 LEELRQLISSGEIDPDTL 33 (45)
T ss_pred HHHHHHHHHcCCCCCCCe
Confidence 678889999999887543
No 357
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=22.91 E-value=93 Score=22.63 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=15.0
Q ss_pred HHHHHHHhhccCCEEEEE
Q 035717 17 MLDAVLINMKIGGQIAVC 34 (125)
Q Consensus 17 ~~~~~~~~l~~~G~~v~~ 34 (125)
.+..++++|+++|++|..
T Consensus 361 iL~~a~~~LkpGG~lvys 378 (444)
T PRK14902 361 ILESVAQYLKKGGILVYS 378 (444)
T ss_pred HHHHHHHHcCCCCEEEEE
Confidence 467788999999999864
No 358
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=22.72 E-value=3.2e+02 Score=20.18 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=9.8
Q ss_pred cchhHHHHHHHHHhcCCCcCe
Q 035717 97 EGLESALAARVGLFSGRNLGK 117 (125)
Q Consensus 97 ~~l~~~~~a~~~~~~~~~~gk 117 (125)
....|+.++++..++....|+
T Consensus 84 ~gvkdlr~i~e~a~~~~~~gr 104 (436)
T COG2256 84 SGVKDLREIIEEARKNRLLGR 104 (436)
T ss_pred ccHHHHHHHHHHHHHHHhcCC
Confidence 455555555555544333333
No 359
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=22.58 E-value=2.3e+02 Score=19.50 Aligned_cols=35 Identities=11% Similarity=-0.091 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHcCceeeeeecccchhHHHHHHHH
Q 035717 74 PKFLEMIIPHIKWAKIVYIEDTAEGLESALAARVG 108 (125)
Q Consensus 74 ~~~~~~~~~l~~~g~i~~~~~~~~~l~~~~~a~~~ 108 (125)
.+.|+.+-+++.+|+++..=..-|..++++++++.
T Consensus 120 ~etw~alE~l~~~G~ir~IGVSNF~~~~L~~l~~~ 154 (280)
T COG0656 120 EETWKALEELVDEGLIRAIGVSNFGVEHLEELLSL 154 (280)
T ss_pred HHHHHHHHHHHhcCCccEEEeeCCCHHHHHHHHHh
Confidence 47788888899999998765555888998888886
No 360
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=22.32 E-value=1.8e+02 Score=19.59 Aligned_cols=31 Identities=23% Similarity=0.222 Sum_probs=21.5
Q ss_pred ceeeEEEe-----CCchH--HHHHHHHhhccCCEEEEE
Q 035717 4 EGIDIYFE-----NVGGK--MLDAVLINMKIGGQIAVC 34 (125)
Q Consensus 4 ~g~Dvv~d-----~~g~~--~~~~~~~~l~~~G~~v~~ 34 (125)
+.||||+. -+..+ .+..+.+.++|+|.+..-
T Consensus 123 ~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 123 GQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLS 160 (243)
T ss_pred CCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEe
Confidence 45888863 33322 467899999999988753
No 361
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=22.25 E-value=2.3e+02 Score=18.86 Aligned_cols=35 Identities=11% Similarity=0.014 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHcCceeeeeecccchhHHHHHHHH
Q 035717 74 PKFLEMIIPHIKWAKIVYIEDTAEGLESALAARVG 108 (125)
Q Consensus 74 ~~~~~~~~~l~~~g~i~~~~~~~~~l~~~~~a~~~ 108 (125)
.+.++.+.++.++|+++..=...|..+++.++++.
T Consensus 108 ~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~ 142 (267)
T PRK11172 108 EEFMQALLEAKKQGLTREIGISNFTIALMKQAIAA 142 (267)
T ss_pred HHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHHHh
Confidence 56788888999999998765555788888888764
No 362
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=21.96 E-value=3.2e+02 Score=21.52 Aligned_cols=44 Identities=14% Similarity=0.048 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHcCceeeeeecccchhHHHHHHHHHhcCCCcC-eEEEEecC
Q 035717 74 PKFLEMIIPHIKWAKIVYIEDTAEGLESALAARVGLFSGRNLG-KQVAAVAS 124 (125)
Q Consensus 74 ~~~~~~~~~l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~g-kvvi~~~~ 124 (125)
.+.|++-++++++....+ ++++|+.++++. +....+ .|+|+|+|
T Consensus 71 pe~Fe~QL~~Lk~nGY~~-----VSL~el~~~~~g--~~~LP~KaV~LTFDD 115 (672)
T PRK14581 71 SSALNEQFVWLRDNGYHV-----VSVDQILAARNG--GPTLPDKAVLLTFDD 115 (672)
T ss_pred HHHHHHHHHHHHHCcCEE-----ecHHHHHHHHhc--CCCCCCCeEEEEEEc
Confidence 345666677776665543 456665554431 112223 35666654
No 363
>PRK00304 hypothetical protein; Provisional
Probab=21.79 E-value=80 Score=17.02 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=12.6
Q ss_pred cchhH-HHHHHHHHhcCCCcCeEEEEecC
Q 035717 97 EGLES-ALAARVGLFSGRNLGKQVAAVAS 124 (125)
Q Consensus 97 ~~l~~-~~~a~~~~~~~~~~gkvvi~~~~ 124 (125)
.++++ +.+..+.++ .|+++|.+++
T Consensus 32 ~sL~~kv~qv~~qL~----~G~~vIvfse 56 (75)
T PRK00304 32 TPLETRVLRVRQALT----KGQAVILFDP 56 (75)
T ss_pred ccHHHHHHHHHHHHH----cCCEEEEECC
Confidence 34444 344445444 3567777664
No 364
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=21.71 E-value=2.9e+02 Score=19.31 Aligned_cols=39 Identities=10% Similarity=0.011 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHcCceeeeeecccchhHHHHHHHHHhc
Q 035717 73 YPKFLEMIIPHIKWAKIVYIEDTAEGLESALAARVGLFS 111 (125)
Q Consensus 73 ~~~~~~~~~~l~~~g~i~~~~~~~~~l~~~~~a~~~~~~ 111 (125)
..+.++.+.++.++|+++..=...+..+++.++.+.+..
T Consensus 146 ~~e~~~al~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~ 184 (346)
T PRK09912 146 MEETASALAHAVQSGKALYVGISSYSPERTQKMVELLRE 184 (346)
T ss_pred HHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHHHHh
Confidence 456778888899999998765555777777777665543
No 365
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=21.64 E-value=3e+02 Score=19.35 Aligned_cols=48 Identities=13% Similarity=-0.022 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHcCceeeeeecccchhHHHHHHHHHhcCCCcCeEEEE
Q 035717 74 PKFLEMIIPHIKWAKIVYIEDTAEGLESALAARVGLFSGRNLGKQVAA 121 (125)
Q Consensus 74 ~~~~~~~~~l~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~ 121 (125)
.+++.+.++++.+-.=.|....+-..+-+.+|++....-+..||.++-
T Consensus 81 ~eam~k~I~~v~~~~d~Pl~IDSt~p~a~eaaLk~~~e~G~~gR~IiN 128 (308)
T PRK00979 81 PEAMEKYIDFVSEITDLPFLIDSTSPEARIAAAKYATELGLADRAIYN 128 (308)
T ss_pred HHHHHHHHHHHHhcCCCCEEEeCCCHHHHHHHHHHhhhcCCCCceEEE
Confidence 455677777766543333322224556666777766543445565543
No 366
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=21.53 E-value=1.3e+02 Score=19.98 Aligned_cols=30 Identities=17% Similarity=0.284 Sum_probs=21.1
Q ss_pred eeeEEEeCCch-HHHHHHHHhhccCCEEEEE
Q 035717 5 GIDIYFENVGG-KMLDAVLINMKIGGQIAVC 34 (125)
Q Consensus 5 g~Dvv~d~~g~-~~~~~~~~~l~~~G~~v~~ 34 (125)
.+|.|.=-++. +..+..++.|+++|++++-
T Consensus 162 ~YDaIhvGAaa~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 162 PYDAIHVGAAASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred CcceEEEccCccccHHHHHHhhccCCeEEEe
Confidence 46666633332 4578899999999998764
No 367
>KOG3870 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.49 E-value=1e+02 Score=22.40 Aligned_cols=41 Identities=17% Similarity=0.013 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHcCceeeeeecc-------cchhHH-HHHHHHHhcCC
Q 035717 73 YPKFLEMIIPHIKWAKIVYIEDTA-------EGLESA-LAARVGLFSGR 113 (125)
Q Consensus 73 ~~~~~~~~~~l~~~g~i~~~~~~~-------~~l~~~-~~a~~~~~~~~ 113 (125)
....-.++.+++.+|++....... +.+.++ ++-|..+++.+
T Consensus 305 ls~~g~k~~~~~~~Gk~vl~~~~FWTsph~y~~M~~~~p~Ly~~L~~S~ 353 (434)
T KOG3870|consen 305 LSAFGKKLEKFIKEGKIVLRPHYFWTSPHDYYRMPQVAPDLYDDLQKSS 353 (434)
T ss_pred HHHHHHHHHHHHhcCcEEEccCccccCcchhhcccccchHHHHHHhhCc
Confidence 344456677788999988654321 334333 44566665543
No 368
>PRK04966 hypothetical protein; Provisional
Probab=21.46 E-value=82 Score=16.81 Aligned_cols=10 Identities=20% Similarity=0.219 Sum_probs=6.0
Q ss_pred cCeEEEEecC
Q 035717 115 LGKQVAAVAS 124 (125)
Q Consensus 115 ~gkvvi~~~~ 124 (125)
.|+++|.+++
T Consensus 48 ~G~~viv~se 57 (72)
T PRK04966 48 SGEAVLVWSE 57 (72)
T ss_pred cCCEEEEECC
Confidence 3566776654
No 369
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=21.44 E-value=1.3e+02 Score=17.59 Aligned_cols=26 Identities=15% Similarity=-0.040 Sum_probs=14.6
Q ss_pred eeeEEEeCCchHHH-HHHHHhhccCCE
Q 035717 5 GIDIYFENVGGKML-DAVLINMKIGGQ 30 (125)
Q Consensus 5 g~Dvv~d~~g~~~~-~~~~~~l~~~G~ 30 (125)
++|+||+|+..... ....+.++..+.
T Consensus 92 ~~d~vi~~~d~~~~~~~l~~~~~~~~~ 118 (135)
T PF00899_consen 92 DYDIVIDCVDSLAARLLLNEICREYGI 118 (135)
T ss_dssp TSSEEEEESSSHHHHHHHHHHHHHTT-
T ss_pred CCCEEEEecCCHHHHHHHHHHHHHcCC
Confidence 57888888875432 233334455554
No 370
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.43 E-value=61 Score=22.17 Aligned_cols=33 Identities=24% Similarity=0.213 Sum_probs=23.7
Q ss_pred ceeeEEEeCCchHHHHHHHHhhccCCEEEEEccc
Q 035717 4 EGIDIYFENVGGKMLDAVLINMKIGGQIAVCGMI 37 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~ 37 (125)
+++|+++.++|.+.+ --.+.++++..++.+|..
T Consensus 201 ~~aDIvI~AtG~~~~-v~~~~lk~gavViDvg~n 233 (283)
T PRK14192 201 KQADIIVGAVGKPEL-IKKDWIKQGAVVVDAGFH 233 (283)
T ss_pred ccCCEEEEccCCCCc-CCHHHcCCCCEEEEEEEe
Confidence 468999999985432 123558898888888864
No 371
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=21.39 E-value=90 Score=21.93 Aligned_cols=34 Identities=9% Similarity=-0.036 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHcCceeeeeecccchhHHHHHHHHH
Q 035717 74 PKFLEMIIPHIKWAKIVYIEDTAEGLESALAARVGL 109 (125)
Q Consensus 74 ~~~~~~~~~l~~~g~i~~~~~~~~~l~~~~~a~~~~ 109 (125)
...+..+++.++.|.++-+.. +.+.++.+|+.++
T Consensus 149 s~vFRAILdYYksG~iRCP~~--vSvpELrEACDYL 182 (438)
T KOG3840|consen 149 SSCFRAILDYYQSGTMRCPSS--VSVSELREACDYL 182 (438)
T ss_pred HHHHHHHHHHHhcCceeCCCC--CchHHHHhhcceE
Confidence 356889999999999996544 4677788887765
No 372
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=21.25 E-value=1.2e+02 Score=19.77 Aligned_cols=19 Identities=11% Similarity=0.312 Sum_probs=16.0
Q ss_pred HHHHHHHhhccCCEEEEEc
Q 035717 17 MLDAVLINMKIGGQIAVCG 35 (125)
Q Consensus 17 ~~~~~~~~l~~~G~~v~~g 35 (125)
.++...+.|+|+|+++...
T Consensus 143 ~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 143 LLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred HHHHHHHhcCCCeEEEEee
Confidence 4788889999999988764
No 373
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=21.15 E-value=1.1e+02 Score=22.08 Aligned_cols=20 Identities=10% Similarity=0.263 Sum_probs=17.1
Q ss_pred HHHHHHHhhccCCEEEEEcc
Q 035717 17 MLDAVLINMKIGGQIAVCGM 36 (125)
Q Consensus 17 ~~~~~~~~l~~~G~~v~~g~ 36 (125)
.++..|..+++||.+|++-.
T Consensus 207 ~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 207 NIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred HHHHHHHhccCCCeEEEEeC
Confidence 57889999999999998843
No 374
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=21.13 E-value=1.1e+02 Score=18.84 Aligned_cols=17 Identities=29% Similarity=0.300 Sum_probs=13.1
Q ss_pred HHHHHHhhccCCEEEEE
Q 035717 18 LDAVLINMKIGGQIAVC 34 (125)
Q Consensus 18 ~~~~~~~l~~~G~~v~~ 34 (125)
+..+++.|+++|.+|.-
T Consensus 122 l~~a~~~L~~gG~~v~K 138 (181)
T PF01728_consen 122 LLLALELLKPGGTFVIK 138 (181)
T ss_dssp HHHHHHHHCTTEEEEEE
T ss_pred HHHHHhhhcCCCEEEEE
Confidence 45666789999998864
No 375
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=20.92 E-value=1.1e+02 Score=20.84 Aligned_cols=33 Identities=15% Similarity=0.016 Sum_probs=24.9
Q ss_pred eeeEEEeCCchHHHHHHHHhhccCCEEEEEccc
Q 035717 5 GIDIYFENVGGKMLDAVLINMKIGGQIAVCGMI 37 (125)
Q Consensus 5 g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~ 37 (125)
.+||++|-+..+.....++.+...|.-..+|-.
T Consensus 69 ~~DV~IDFT~P~~~~~~l~~~~~~~~~lVIGTT 101 (266)
T COG0289 69 DADVLIDFTTPEATLENLEFALEHGKPLVIGTT 101 (266)
T ss_pred CCCEEEECCCchhhHHHHHHHHHcCCCeEEECC
Confidence 579999988776666777777778877777753
No 376
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=20.79 E-value=96 Score=21.86 Aligned_cols=35 Identities=20% Similarity=0.138 Sum_probs=22.2
Q ss_pred ceeeEEEeCCchH-HHHHHHHhhccCCEEEEEcccc
Q 035717 4 EGIDIYFENVGGK-MLDAVLINMKIGGQIAVCGMIS 38 (125)
Q Consensus 4 ~g~Dvv~d~~g~~-~~~~~~~~l~~~G~~v~~g~~~ 38 (125)
.++|+|++|++.. .....-..++.+.+.|.+|..+
T Consensus 74 ~~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~ 109 (333)
T TIGR01546 74 EKVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEK 109 (333)
T ss_pred hcCCEEEECCCCCCChhhHHHHHhCCcCEEEECCCC
Confidence 4789999999853 3333334455555667776643
No 377
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=20.53 E-value=1.8e+02 Score=19.13 Aligned_cols=27 Identities=22% Similarity=0.070 Sum_probs=18.8
Q ss_pred ccchhHHHHHHHHHhcCCCcCeEEEEec
Q 035717 96 AEGLESALAARVGLFSGRNLGKQVAAVA 123 (125)
Q Consensus 96 ~~~l~~~~~a~~~~~~~~~~gkvvi~~~ 123 (125)
..|++.++...+.+.+.- .||+||+..
T Consensus 67 AVP~~a~~~v~~~l~~~~-~~KIvID~t 93 (211)
T COG2085 67 AVPFEAIPDVLAELRDAL-GGKIVIDAT 93 (211)
T ss_pred eccHHHHHhHHHHHHHHh-CCeEEEecC
Confidence 367888888777776532 278888864
No 378
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=20.48 E-value=1.8e+02 Score=19.21 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=22.9
Q ss_pred ceeeEEEeCCchH-HHHHHHHhhccCCEEEEE
Q 035717 4 EGIDIYFENVGGK-MLDAVLINMKIGGQIAVC 34 (125)
Q Consensus 4 ~g~Dvv~d~~g~~-~~~~~~~~l~~~G~~v~~ 34 (125)
.++|+|+.|++.. ..+.+.++|+.|-.+++.
T Consensus 36 ~~vDaVviatp~~~H~e~a~~aL~aGkhVl~~ 67 (229)
T TIGR03855 36 EDVDIVVEAASQEAVKEYAEKILKNGKDLLIM 67 (229)
T ss_pred CCCCEEEECCChHHHHHHHHHHHHCCCCEEEE
Confidence 4689999999975 466777788776555553
No 379
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=20.44 E-value=1.4e+02 Score=20.38 Aligned_cols=33 Identities=21% Similarity=0.205 Sum_probs=24.4
Q ss_pred ceeeEEEeCCchHHH-HHHHHhhccCCEEEEEcc
Q 035717 4 EGIDIYFENVGGKML-DAVLINMKIGGQIAVCGM 36 (125)
Q Consensus 4 ~g~Dvv~d~~g~~~~-~~~~~~l~~~G~~v~~g~ 36 (125)
...|+|++++....+ ...++.++++..++.++.
T Consensus 208 ~~aDiVint~P~~ii~~~~l~~~k~~aliIDlas 241 (287)
T TIGR02853 208 AEIDIVINTIPALVLTADVLSKLPKHAVIIDLAS 241 (287)
T ss_pred ccCCEEEECCChHHhCHHHHhcCCCCeEEEEeCc
Confidence 368999998875432 456778888888888865
No 380
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.37 E-value=1.6e+02 Score=15.75 Aligned_cols=28 Identities=18% Similarity=0.139 Sum_probs=21.7
Q ss_pred eeeEEEeCCc-hHHHHHHHHhhccCCEEE
Q 035717 5 GIDIYFENVG-GKMLDAVLINMKIGGQIA 32 (125)
Q Consensus 5 g~Dvv~d~~g-~~~~~~~~~~l~~~G~~v 32 (125)
.+.+++++.+ .+..+...+.|+..|--+
T Consensus 41 ~v~i~ie~~~~~~~~~~i~~~L~~~G~~~ 69 (85)
T cd04906 41 HIFVGVSVANGAEELAELLEDLKSAGYEV 69 (85)
T ss_pred EEEEEEEeCCcHHHHHHHHHHHHHCCCCe
Confidence 4667788888 778888999999988433
No 381
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=20.23 E-value=1.5e+02 Score=18.73 Aligned_cols=19 Identities=26% Similarity=0.274 Sum_probs=15.8
Q ss_pred HHHHHHHHhhccCCEEEEE
Q 035717 16 KMLDAVLINMKIGGQIAVC 34 (125)
Q Consensus 16 ~~~~~~~~~l~~~G~~v~~ 34 (125)
..+..+.+.|+++|++...
T Consensus 113 ~~l~~~~r~LkpgG~l~~~ 131 (194)
T TIGR00091 113 HFLKEYANVLKKGGVIHFK 131 (194)
T ss_pred HHHHHHHHHhCCCCEEEEE
Confidence 3578889999999998765
No 382
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=20.20 E-value=1.1e+02 Score=22.25 Aligned_cols=19 Identities=26% Similarity=0.371 Sum_probs=15.7
Q ss_pred HHHHHHHhhccCCEEEEEc
Q 035717 17 MLDAVLINMKIGGQIAVCG 35 (125)
Q Consensus 17 ~~~~~~~~l~~~G~~v~~g 35 (125)
.+..+.++|+++|+++..-
T Consensus 359 iL~~a~~~lkpgG~lvyst 377 (445)
T PRK14904 359 LLDHAASLLKPGGVLVYAT 377 (445)
T ss_pred HHHHHHHhcCCCcEEEEEe
Confidence 3678888999999998753
No 383
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=20.17 E-value=6.3e+02 Score=22.56 Aligned_cols=31 Identities=16% Similarity=0.305 Sum_probs=21.2
Q ss_pred EEEe---CCchHHHHHHHHhhcc-CCEEEEEcccc
Q 035717 8 IYFE---NVGGKMLDAVLINMKI-GGQIAVCGMIS 38 (125)
Q Consensus 8 vv~d---~~g~~~~~~~~~~l~~-~G~~v~~g~~~ 38 (125)
+|+| .++...+...++.+.. ++++|.+|...
T Consensus 934 lIVDEASMV~~~~m~~ll~~~~~~garvVLVGD~~ 968 (1623)
T PRK14712 934 FLLDESSMVGNTDMARAYALIAAGGGRAVASGDTD 968 (1623)
T ss_pred EEEEccccccHHHHHHHHHhhhhCCCEEEEEcchh
Confidence 3566 4445567777777765 68999999744
No 384
>smart00361 RRM_1 RNA recognition motif.
Probab=20.11 E-value=1.1e+02 Score=15.56 Aligned_cols=20 Identities=30% Similarity=0.116 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHhcCCCcCeE
Q 035717 99 LESALAARVGLFSGRNLGKQ 118 (125)
Q Consensus 99 l~~~~~a~~~~~~~~~~gkv 118 (125)
-+++..|++.+......|+.
T Consensus 47 ~~dA~~A~~~l~g~~~~gr~ 66 (70)
T smart00361 47 SEDAARAIVDLNGRYFDGRT 66 (70)
T ss_pred HHHHHHHHHHhCCCEECCEE
Confidence 45555555555444334444
Done!