Your job contains 1 sequence.
>035720
MPKSKRDRPVTLSKTKKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI
KPSRLLWVGRYPMRYSQAYKVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTA
TEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILR
LLGIKMATFKLHLICRWSAEDFELYREGLDESDVESA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 035720
(217 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2032970 - symbol:AT1G25260 "AT1G25260" species... 707 8.9e-70 1
ZFIN|ZDB-GENE-050417-142 - symbol:mrto4 "mRNA turnover 4 ... 453 7.3e-43 1
UNIPROTKB|F1P353 - symbol:MRTO4 "Uncharacterized protein"... 446 4.0e-42 1
UNIPROTKB|A4FV84 - symbol:MRTO4 "mRNA turnover protein 4 ... 444 6.6e-42 1
UNIPROTKB|E2RG17 - symbol:MRTO4 "Uncharacterized protein"... 443 8.4e-42 1
UNIPROTKB|F1SUQ2 - symbol:MRTO4 "Uncharacterized protein"... 440 1.7e-41 1
MGI|MGI:1917152 - symbol:Mrto4 "MRT4, mRNA turnover 4, ho... 440 1.7e-41 1
FB|FBgn0033485 - symbol:RpLP0-like "Ribosomal protein LP0... 430 2.0e-40 1
UNIPROTKB|Q9UKD2 - symbol:MRTO4 "mRNA turnover protein 4 ... 430 2.0e-40 1
WB|WBGene00017347 - symbol:F10E7.5 species:6239 "Caenorha... 388 5.7e-36 1
RGD|1311709 - symbol:Mrto4 "mRNA turnover 4 homolog (S. c... 376 1.1e-34 1
UNIPROTKB|F1M970 - symbol:F1M970 "Uncharacterized protein... 359 6.7e-33 1
UNIPROTKB|E2QYG0 - symbol:E2QYG0 "Uncharacterized protein... 358 8.5e-33 1
UNIPROTKB|J9NSQ8 - symbol:MRTO4 "Uncharacterized protein"... 354 2.3e-32 1
DICTYBASE|DDB_G0276411 - symbol:mrt4 "mRNA turnover prote... 336 1.8e-30 1
UNIPROTKB|G4MVM1 - symbol:MGG_08908 "mRNA turnover protei... 170 4.9e-24 2
POMBASE|SPBC11G11.03 - symbol:mrt4 "mRNA turnover and rib... 203 2.3e-16 1
UNIPROTKB|F1PCD5 - symbol:F1PCD5 "Uncharacterized protein... 199 6.0e-16 1
ASPGD|ASPL0000002010 - symbol:AN6902 species:162425 "Emer... 168 1.2e-12 1
CGD|CAL0001932 - symbol:RPP0 species:5476 "Candida albica... 161 1.8e-11 1
SGD|S000004332 - symbol:RPP0 "Conserved ribosomal protein... 160 2.3e-11 1
SGD|S000001492 - symbol:MRT4 "Protein involved in mRNA tu... 146 2.6e-09 1
ASPGD|ASPL0000036346 - symbol:AN2734 species:162425 "Emer... 138 1.2e-07 1
CGD|CAL0006176 - symbol:MRT4 species:5476 "Candida albica... 131 4.4e-07 1
UNIPROTKB|Q5AC00 - symbol:MRT4 "Potential rRNA processing... 131 4.4e-07 1
POMBASE|SPCC18.14c - symbol:rpp0 "60S acidic ribosomal pr... 119 3.7e-05 1
TAIR|locus:2061231 - symbol:AT2G40010 species:3702 "Arabi... 108 0.00081 1
>TAIR|locus:2032970 [details] [associations]
symbol:AT1G25260 "AT1G25260" species:3702 "Arabidopsis
thaliana" [GO:0003735 "structural constituent of ribosome"
evidence=ISS] [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0005840 "ribosome" evidence=ISS]
[GO:0006412 "translation" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0022626 "cytosolic ribosome"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510 "RNA
methylation" evidence=RCA] InterPro:IPR001790 Pfam:PF00466
EMBL:CP002684 GO:GO:0042254 GO:GO:0022626 HOGENOM:HOG000177263
KO:K14815 OMA:AWKHSRF EMBL:AY045969 EMBL:AY079322 EMBL:AY088374
IPI:IPI00529475 RefSeq:NP_564226.1 UniGene:At.21571
ProteinModelPortal:Q94AK8 IntAct:Q94AK8 STRING:Q94AK8 PRIDE:Q94AK8
EnsemblPlants:AT1G25260.1 GeneID:839109 KEGG:ath:AT1G25260
TAIR:At1g25260 InParanoid:Q94AK8 PhylomeDB:Q94AK8
ProtClustDB:CLSN2687949 ArrayExpress:Q94AK8 Genevestigator:Q94AK8
Uniprot:Q94AK8
Length = 235
Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
Identities = 151/235 (64%), Positives = 170/235 (72%)
Query: 1 MPKSKRDRPVTLSXXXXXXXXXXEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
MPKSKRDRPVTLS E IVN IR AVE Y S+YVFSFENMRN+KFKEFR+Q
Sbjct: 1 MPKSKRDRPVTLSKTKKKGREHKECIVNGIREAVEKYSSVYVFSFENMRNIKFKEFRQQF 60
Query: 61 KPSRLLWVGRYPMRY------------SQAYKVSKFLCGNTGLFLTNMPKEEVESLFNKY 108
+ + ++G + S YKVSK L G+TGL +T+MPKEEVESLFN Y
Sbjct: 61 RHNGKFFLGSNKVMQVALGRSAEDELRSGIYKVSKLLRGDTGLLVTDMPKEEVESLFNAY 120
Query: 109 EDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEG 168
ED DF+RTGS A E VEL EGPLEQFTHEMEP LRK MPVRLNKG VELV+DFVVCEEG
Sbjct: 121 EDSDFSRTGSIAVETVELKEGPLEQFTHEMEPLLRKLEMPVRLNKGTVELVADFVVCEEG 180
Query: 169 KPLSPESARILRLLGIKMATFKLHLICRWSAEDFELYREGLDE------SDVESA 217
K LSP+SA ILRLL +KMATFKL+L+CRWS DFELYRE L E SDVE++
Sbjct: 181 KQLSPKSAHILRLLRMKMATFKLNLLCRWSPSDFELYREDLSELYREDLSDVETS 235
>ZFIN|ZDB-GENE-050417-142 [details] [associations]
symbol:mrto4 "mRNA turnover 4 homolog (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] InterPro:IPR001790 Pfam:PF00466
ZFIN:ZDB-GENE-050417-142 GO:GO:0042254 GO:GO:0005840 CTD:51154
eggNOG:COG0244 HOGENOM:HOG000177263 HOVERGEN:HBG052510 KO:K14815
OrthoDB:EOG41C6X4 EMBL:BC092913 IPI:IPI00512586
RefSeq:NP_001017657.1 UniGene:Dr.105236 STRING:Q568C9 GeneID:550350
KEGG:dre:550350 InParanoid:Q568C9 NextBio:20879605
ArrayExpress:Q568C9 Uniprot:Q568C9
Length = 242
Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
Identities = 93/230 (40%), Positives = 138/230 (60%)
Query: 1 MPKSKRDRPVTLSXXXXXXXXXXEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
MPKSKRD+ ++L+ + ++ +R + Y+ ++VFS ENMRN K K+ R
Sbjct: 1 MPKSKRDKKISLTKTTKKGLEAKQNLIEELRKCADIYRYVFVFSVENMRNNKLKDIRTAW 60
Query: 61 KPSRLLW---------VGRYPM-RYSQ-AYKVSKFLCGNTGLFLTNMPKEEVESLFNKYE 109
+ SR + +G+ P Y +K+S+FL G G+ TN K+EV+ F ++
Sbjct: 61 RHSRFFFGKNKVMMIALGKGPTDEYKDNLHKLSRFLRGEVGVLFTNKTKDEVQEYFGNFK 120
Query: 110 DYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGK 169
+ D+AR G+TA+ V L EGPL+QF H MEP LR+ G+P L KG V L+ DF VC+EG
Sbjct: 121 EVDYARAGNTASMAVTLDEGPLDQFPHSMEPQLRQLGLPTALKKGAVTLIKDFEVCKEGD 180
Query: 170 PLSPESARILRLLGIKMATFKLHLICRWSAE--DFELYREGLDESDVESA 217
L+PE ARIL+L G +MA FKL + C W++E +FE +G D+ + + A
Sbjct: 181 TLTPEQARILKLFGFEMAEFKLSIKCMWNSESGEFEKLTDGDDDDETKEA 230
>UNIPROTKB|F1P353 [details] [associations]
symbol:MRTO4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0031965 "nuclear membrane" evidence=IEA] InterPro:IPR001790
Pfam:PF00466 GO:GO:0005730 GO:GO:0031965 GO:GO:0042254
GO:GO:0005840 EMBL:AADN02040697 GeneTree:ENSGT00390000006238
OMA:AWKHSRF IPI:IPI00587586 Ensembl:ENSGALT00000006360
Uniprot:F1P353
Length = 249
Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
Identities = 100/227 (44%), Positives = 137/227 (60%)
Query: 1 MPKSKRDRPVTLSXXXXXXXXXXEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
MPKSKRDR V+L+ + ++ +R V+ YK I++FS NMRN K K+ R
Sbjct: 8 MPKSKRDRKVSLTRTPRKGLEAKQALIAELRRCVDTYKHIFIFSVANMRNNKLKDVRNAW 67
Query: 61 KPSRLLW---------VGRYPM-RYSQ-AYKVSKFLCGNTGLFLTNMPKEEVESLFNKYE 109
K SR+ + +GR P Y + ++VSK L G GL TN KEEV+ F+ ++
Sbjct: 68 KHSRIFFGKNKVMMVALGREPSSEYRENLHQVSKHLRGEVGLLFTNRTKEEVDEWFSSFK 127
Query: 110 DYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGK 169
+ DFAR G+ AT V L GPLEQF H MEP LR+ G+P L KGVV L+SD+ VC+EG
Sbjct: 128 EVDFARAGNKATYTVSLDTGPLEQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCKEGD 187
Query: 170 PLSPESARILRLLGIKMATFKLHLICRWSAE--DFE-LYREGLDESD 213
L+PE AR+L+L G +MA FK+ + W++E DF+ L + DE D
Sbjct: 188 ILTPEQARVLKLFGYEMAEFKVTIKFLWNSETGDFQKLVGDEEDEED 234
>UNIPROTKB|A4FV84 [details] [associations]
symbol:MRTO4 "mRNA turnover protein 4 homolog" species:9913
"Bos taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0031965
"nuclear membrane" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] InterPro:IPR001790 Pfam:PF00466 GO:GO:0005730
GO:GO:0031965 GO:GO:0042254 EMBL:BC123852 IPI:IPI00718277
RefSeq:NP_001076868.1 UniGene:Bt.22192 STRING:A4FV84 PRIDE:A4FV84
Ensembl:ENSBTAT00000015861 GeneID:509932 KEGG:bta:509932 CTD:51154
eggNOG:COG0244 GeneTree:ENSGT00390000006238 HOGENOM:HOG000177263
HOVERGEN:HBG052510 InParanoid:A4FV84 KO:K14815 OMA:AWKHSRF
OrthoDB:EOG41C6X4 NextBio:20869201 Uniprot:A4FV84
Length = 239
Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
Identities = 99/229 (43%), Positives = 134/229 (58%)
Query: 1 MPKSKRDRPVTLSXXXXXXXXXXEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
MPKSKRD+ V+L+ + ++ +R V+ YK +++FS NMRN K K+ R
Sbjct: 1 MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60
Query: 61 KPSRLLW---------VGRYPM-RYSQ-AYKVSKFLCGNTGLFLTNMPKEEVESLFNKYE 109
K SR+ + +GR P Y ++VSK L G GL TN KEEV+ F KY
Sbjct: 61 KHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKKLRGEVGLLFTNRTKEEVDEWFTKYT 120
Query: 110 DYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGK 169
+ D+AR G+ AT V L GPLEQF H MEP LR+ G+P L KGVV L+SD+ VC+EG
Sbjct: 121 EMDYARAGNKATFTVNLDPGPLEQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCKEGD 180
Query: 170 PLSPESARILRLLGIKMATFKLHLICRWSAED--FELYREGLDESDVES 216
L+PE AR+L+L G +MA FK+ + W A+ F+ + L ES ES
Sbjct: 181 VLTPEQARVLKLFGYEMAEFKVSIKYMWDAQSGRFQQMGDDLPESAPES 229
>UNIPROTKB|E2RG17 [details] [associations]
symbol:MRTO4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005840 "ribosome" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] InterPro:IPR001790 Pfam:PF00466
GO:GO:0042254 GO:GO:0005840 CTD:51154 GeneTree:ENSGT00390000006238
KO:K14815 OMA:AWKHSRF EMBL:AAEX03001814 RefSeq:XP_544532.2
Ensembl:ENSCAFT00000024114 GeneID:487406 KEGG:cfa:487406
NextBio:20861004 Uniprot:E2RG17
Length = 240
Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
Identities = 101/230 (43%), Positives = 133/230 (57%)
Query: 1 MPKSKRDRPVTLSXXXXXXXXXXEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
MPKSKRD+ V+L+ + ++ +R V+ YK +++FS NMRN K K+ R
Sbjct: 1 MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60
Query: 61 KPSRLLW---------VGRYPM-RYSQ-AYKVSKFLCGNTGLFLTNMPKEEVESLFNKYE 109
K SR+ + +GR P Y ++VSK L G GL TN KEEV F KY
Sbjct: 61 KHSRMFFGKNKVMMVALGRSPADEYKDNLHQVSKKLKGEVGLLFTNRTKEEVNEWFTKYT 120
Query: 110 DYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGK 169
+ DFAR G+ AT V L GPLEQF H MEP LR+ G+P L +GVV L+SD VC+EG
Sbjct: 121 EMDFARAGNKATFTVTLDPGPLEQFPHSMEPQLRQLGLPTALKRGVVTLLSDHEVCKEGD 180
Query: 170 PLSPESARILRLLGIKMATFKLHLICRWSAED--FELYREGLDESDVESA 217
L+PE AR+L+L G +MA FK+ + W A+ F+ E L ES ESA
Sbjct: 181 VLTPEQARVLKLFGYEMAEFKVTIRYMWDAQSGRFQQMGEDLPESASESA 230
>UNIPROTKB|F1SUQ2 [details] [associations]
symbol:MRTO4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0031965 "nuclear membrane" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] InterPro:IPR001790
Pfam:PF00466 GO:GO:0005730 GO:GO:0031965 GO:GO:0042254
GO:GO:0005840 CTD:51154 GeneTree:ENSGT00390000006238 KO:K14815
OMA:AWKHSRF EMBL:FP236131 RefSeq:NP_001230644.1 UniGene:Ssc.6624
Ensembl:ENSSSCT00000003877 GeneID:100511136 KEGG:ssc:100511136
Uniprot:F1SUQ2
Length = 241
Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
Identities = 100/229 (43%), Positives = 133/229 (58%)
Query: 1 MPKSKRDRPVTLSXXXXXXXXXXEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
MPKSKRD+ V+L+ + ++ +R V+ YK +++FS NMRN K K+ R
Sbjct: 1 MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKFLFIFSVANMRNSKLKDIRNAW 60
Query: 61 KPSRLLW---------VGRYPMR-Y-SQAYKVSKFLCGNTGLFLTNMPKEEVESLFNKYE 109
K SR+ + +GR P Y ++VSK L G GL TN KEEV F KY
Sbjct: 61 KHSRMFFGKNKVMMVALGRSPCEEYRDNLHQVSKKLRGEVGLLFTNRTKEEVNEWFTKYG 120
Query: 110 DYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGK 169
+ D+AR G+ AT V L GPLEQF H MEP LR+ G+P L KGVV L+SD+ VC+EG
Sbjct: 121 EMDYARAGNKATFTVNLDPGPLEQFPHSMEPQLRQLGLPTTLKKGVVTLLSDYEVCKEGD 180
Query: 170 PLSPESARILRLLGIKMATFKLHLICRWSAED--FELYREGLDESDVES 216
L+PE ARIL+L G +MA FK+ + W A+ F+ + L ES ES
Sbjct: 181 VLTPEQARILKLFGYEMAEFKVTIRYMWDAQSGRFQEMGDDLPESAPES 229
>MGI|MGI:1917152 [details] [associations]
symbol:Mrto4 "MRT4, mRNA turnover 4, homolog (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] InterPro:IPR001790
Pfam:PF00466 MGI:MGI:1917152 GO:GO:0005730 GO:GO:0031965
GO:GO:0042254 CTD:51154 eggNOG:COG0244 GeneTree:ENSGT00390000006238
HOGENOM:HOG000177263 HOVERGEN:HBG052510 KO:K14815 OMA:AWKHSRF
OrthoDB:EOG41C6X4 EMBL:AK011387 EMBL:BC005734 IPI:IPI00132578
RefSeq:NP_076025.1 UniGene:Mm.27871 UniGene:Mm.296860
UniGene:Mm.441201 ProteinModelPortal:Q9D0I8 SMR:Q9D0I8
STRING:Q9D0I8 PhosphoSite:Q9D0I8 PaxDb:Q9D0I8 PRIDE:Q9D0I8
Ensembl:ENSMUST00000102503 GeneID:69902 KEGG:mmu:69902
InParanoid:Q9D0I8 NextBio:330573 Bgee:Q9D0I8 CleanEx:MM_MRTO4
Genevestigator:Q9D0I8 GermOnline:ENSMUSG00000028741 Uniprot:Q9D0I8
Length = 239
Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
Identities = 100/229 (43%), Positives = 133/229 (58%)
Query: 1 MPKSKRDRPVTLSXXXXXXXXXXEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
MPKSKRD+ V+L+ + ++ +R V+ YK +++FS NMRN K K+ R
Sbjct: 1 MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60
Query: 61 KPSRLLW---------VGRYPM-RYSQ-AYKVSKFLCGNTGLFLTNMPKEEVESLFNKYE 109
K SR+ + +GR P Y ++VSK L G GL TN KEEV F KY
Sbjct: 61 KHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKKLRGEVGLLFTNRTKEEVNEWFTKYT 120
Query: 110 DYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGK 169
+ DFAR G+ AT V L GPL+QF H MEP LR+ G+P L KGVV L+SD+ VC+EG
Sbjct: 121 EMDFARAGNKATLTVSLDPGPLKQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCKEGD 180
Query: 170 PLSPESARILRLLGIKMATFKLHLICRWSAED--FELYREGLDESDVES 216
L+PE ARIL+L G +MA FK+ + W A+ F+ + L ES ES
Sbjct: 181 VLTPEQARILKLFGYEMAEFKVIIKYMWDAQSGRFQQMDDDLPESAPES 229
>FB|FBgn0033485 [details] [associations]
symbol:RpLP0-like "Ribosomal protein LP0-like" species:7227
"Drosophila melanogaster" [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0006412 "translation" evidence=IC] [GO:0003735
"structural constituent of ribosome" evidence=IC] [GO:0022625
"cytosolic large ribosomal subunit" evidence=ISS]
InterPro:IPR001790 Pfam:PF00466 EMBL:AE013599 GO:GO:0042254
GO:GO:0005840 eggNOG:COG0244 GeneTree:ENSGT00390000006238 KO:K14815
OMA:AWKHSRF EMBL:AY061517 RefSeq:NP_610554.1 UniGene:Dm.12545
SMR:Q7K1Q7 IntAct:Q7K1Q7 STRING:Q7K1Q7 EnsemblMetazoa:FBtr0088425
GeneID:36058 KEGG:dme:Dmel_CG1381 UCSC:CG1381-RA CTD:36058
FlyBase:FBgn0033485 InParanoid:Q7K1Q7 OrthoDB:EOG44TMQV
GenomeRNAi:36058 NextBio:796627 Uniprot:Q7K1Q7
Length = 256
Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
Identities = 99/230 (43%), Positives = 136/230 (59%)
Query: 1 MPKSKRDRPVTLSXXXXXXXXXXEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
MP+SKRD+ V+L+ + IV+ IR V Y +I+VF +NMRN K+ R+++
Sbjct: 1 MPRSKRDKKVSLTKTDRKGLAWKQRIVDDIRFCVGKYPNIFVFQVQNMRNSLLKDLRQEL 60
Query: 61 KP-SRLLW---------VGRYPMRY--SQAYKVSKFLCGNTGLFLTNMPKEEVESLFNKY 108
K SR ++ +GR + +K+SK L G GL T+ KEEV Y
Sbjct: 61 KKNSRFIFGKNRVMQIGLGRTKSEEVEPELHKLSKRLTGQVGLLFTDKSKEEVLEWAENY 120
Query: 109 EDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEG 168
++AR+G ATE V LP GPLE F H MEP LR G+P +L KG+V L SD+ VCEEG
Sbjct: 121 WAVEYARSGFVATETVTLPAGPLEDFAHSMEPHLRSLGLPTKLEKGIVTLYSDYTVCEEG 180
Query: 169 KPLSPESARILRLLGIKMATFKLHLICRWS-AEDFELYREGLDESDVESA 217
K L+PE ARIL+L+G MA F+L + C W+ +E F+L+ E D +D E A
Sbjct: 181 KVLTPEQARILKLVGKPMAKFRLTMKCSWTKSEGFQLHVED-DVNDEEQA 229
>UNIPROTKB|Q9UKD2 [details] [associations]
symbol:MRTO4 "mRNA turnover protein 4 homolog" species:9606
"Homo sapiens" [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0031965 "nuclear membrane" evidence=IDA]
InterPro:IPR001790 Pfam:PF00466 GO:GO:0005730 EMBL:CH471134
GO:GO:0031965 GO:GO:0042254 EMBL:AL035413 CTD:51154 eggNOG:COG0244
HOGENOM:HOG000177263 HOVERGEN:HBG052510 KO:K14815 OMA:AWKHSRF
OrthoDB:EOG41C6X4 EMBL:AF173378 EMBL:AY303790 EMBL:AK024227
EMBL:AK027569 EMBL:BC003013 EMBL:BC006504 IPI:IPI00106491
RefSeq:NP_057267.2 UniGene:Hs.463797 ProteinModelPortal:Q9UKD2
SMR:Q9UKD2 IntAct:Q9UKD2 STRING:Q9UKD2 PhosphoSite:Q9UKD2
DMDM:51316541 SWISS-2DPAGE:Q9UKD2 PaxDb:Q9UKD2 PeptideAtlas:Q9UKD2
PRIDE:Q9UKD2 DNASU:51154 Ensembl:ENST00000330263 GeneID:51154
KEGG:hsa:51154 UCSC:uc001bbs.3 GeneCards:GC01P019578
HGNC:HGNC:18477 HPA:HPA026438 HPA:HPA026446 neXtProt:NX_Q9UKD2
PharmGKB:PA162396216 InParanoid:Q9UKD2 PhylomeDB:Q9UKD2
ChiTaRS:MRTO4 GenomeRNAi:51154 NextBio:54049 Bgee:Q9UKD2
CleanEx:HS_MRTO4 Genevestigator:Q9UKD2 GermOnline:ENSG00000053372
Uniprot:Q9UKD2
Length = 239
Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
Identities = 96/229 (41%), Positives = 132/229 (57%)
Query: 1 MPKSKRDRPVTLSXXXXXXXXXXEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
MPKSKRD+ V+L+ + ++ +R V+ YK +++FS NMRN K K+ R
Sbjct: 1 MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60
Query: 61 KPSRLLW---------VGRYPM-RYSQ-AYKVSKFLCGNTGLFLTNMPKEEVESLFNKYE 109
K SR+ + +GR P Y ++VSK L G GL TN KEEV F KY
Sbjct: 61 KHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKRLRGEVGLLFTNRTKEEVNEWFTKYT 120
Query: 110 DYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGK 169
+ D+AR G+ A V L GPLEQF H MEP LR+ G+P L +GVV L+SD+ VC+EG
Sbjct: 121 EMDYARAGNKAAFTVSLDPGPLEQFPHSMEPQLRQLGLPTALKRGVVTLLSDYEVCKEGD 180
Query: 170 PLSPESARILRLLGIKMATFKLHLICRWSAED--FELYREGLDESDVES 216
L+PE AR+L+L G +MA FK+ + W ++ F+ + L ES ES
Sbjct: 181 VLTPEQARVLKLFGYEMAEFKVTIKYMWDSQSGRFQQMGDDLPESASES 229
>WB|WBGene00017347 [details] [associations]
symbol:F10E7.5 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] InterPro:IPR001790 Pfam:PF00466
GO:GO:0042254 GO:GO:0005840 eggNOG:COG0244
GeneTree:ENSGT00390000006238 HOGENOM:HOG000177263 KO:K14815
OMA:AWKHSRF EMBL:FO081111 PIR:T34209 RefSeq:NP_495470.1
ProteinModelPortal:Q19302 SMR:Q19302 STRING:Q19302 PaxDb:Q19302
EnsemblMetazoa:F10E7.5 GeneID:174168 KEGG:cel:CELE_F10E7.5
UCSC:F10E7.5 CTD:174168 WormBase:F10E7.5 InParanoid:Q19302
NextBio:882821 Uniprot:Q19302
Length = 220
Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
Identities = 81/213 (38%), Positives = 126/213 (59%)
Query: 1 MPKSKRDRPVTLSXXXXXXXXXXEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
M +S+RD+ V+L+ +VN +R +V+ YK++++F+ NMR+ +F R++
Sbjct: 1 MARSRRDKNVSLTKVKKKTKDTKNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKY 60
Query: 61 KPSRLLWVGRYPM-----------RYS-QAYKVSKFLCGNTGLFLTNMPKEEVESLFNKY 108
K + + G+ + Y+ Q +K S L G GL TNM K+EVE+ F++
Sbjct: 61 KENSRFFFGKNNVISIALGKQKSDEYANQLHKASAILKGQCGLMFTNMSKKEVEAEFSEA 120
Query: 109 EDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEG 168
+ D+AR G ATE V LPEGP+ QF MEP LRK G+P +L+KGV+ L F VC+EG
Sbjct: 121 SEEDYARVGDVATETVVLPEGPISQFAFSMEPQLRKLGLPTKLDKGVITLYQQFEVCKEG 180
Query: 169 KPLSPESARILRLLGIKMATFKLHLICRWSAED 201
+PL+ E A+IL+ +KM+ F+L W+ +D
Sbjct: 181 EPLTVEQAKILKHFEVKMSQFRLIFKAHWNKKD 213
>RGD|1311709 [details] [associations]
symbol:Mrto4 "mRNA turnover 4 homolog (S. cerevisiae)"
species:10116 "Rattus norvegicus" [GO:0005840 "ribosome"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
InterPro:IPR001790 Pfam:PF00466 RGD:1311709 GO:GO:0042254
GO:GO:0005840 GeneTree:ENSGT00390000006238 IPI:IPI00365290
Ensembl:ENSRNOT00000024326 UCSC:RGD:1311709 Uniprot:F1LTU4
Length = 203
Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 87/192 (45%), Positives = 113/192 (58%)
Query: 38 KSIYVFSFENMRNLKFKEFREQIKPSRLLW---------VGRYPM-RYSQ-AYKVSKFLC 86
K +++FS NMRN K K+ R K SR+ + +GR P Y ++VSK L
Sbjct: 1 KYLFIFSVANMRNSKLKDIRNAWKHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKKLR 60
Query: 87 GNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQG 146
G GL TN KEEV F KY + DFAR G+ AT V L GPL+QF H MEP LR+ G
Sbjct: 61 GEVGLLFTNRTKEEVNEWFTKYTEMDFARAGNKATLTVSLDPGPLKQFPHSMEPQLRQLG 120
Query: 147 MPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLICRWSAED--FEL 204
+P L KGVV L+SD+ VC+EG L+PE AR+L+L G +MA FK+ + W A+ F+
Sbjct: 121 LPTALKKGVVTLLSDYEVCKEGDVLTPEQARVLKLFGYEMAEFKVTIKYMWDAQSGRFQQ 180
Query: 205 YREGLDESDVES 216
+ L ES ES
Sbjct: 181 MDDDLPESAPES 192
>UNIPROTKB|F1M970 [details] [associations]
symbol:F1M970 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0005840 "ribosome" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] InterPro:IPR001790
Pfam:PF00466 GO:GO:0042254 GO:GO:0005840
GeneTree:ENSGT00390000006238 IPI:IPI00779080
Ensembl:ENSRNOT00000055679 Uniprot:F1M970
Length = 232
Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
Identities = 89/226 (39%), Positives = 123/226 (54%)
Query: 3 KSKRDRPVTLSXXXXXXXXXXEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKP 62
K KRD+ V+L+ + ++ + V+ YK +++FS NMRN K K+ R K
Sbjct: 3 KCKRDKKVSLTKTAKKGLELKQNLIE-LWKCVDTYKYLFIFSMANMRNSKLKDIRNAWKH 61
Query: 63 SR--------LLWVGRYPM-RYSQ-AYKVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYD 112
SR ++ +GR P Y ++V K L G GL TN KEEV F KY + D
Sbjct: 62 SRKFFGNKVIMVALGRSPSDEYKDNLHQVHKKLRGEVGLLFTNRRKEEVNEWFTKYTEMD 121
Query: 113 FARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLS 172
FAR G+ KV GPL+QF H MEP LR+ G+P L GVV L+SD+ VC+EG L+
Sbjct: 122 FARGGN----KVSPDPGPLKQFPHSMEPQLRQLGLPTALKNGVVTLLSDYEVCKEGDVLT 177
Query: 173 PESARILRLLGIKMATFKLHLICRWSAED--FELYREGLDESDVES 216
PE AR+L+L G +MA ++ + W A+ F+ L ES ES
Sbjct: 178 PEQARVLKLFGYEMAESRVTIKFMWDAQSGRFQQMDHDLPESASES 223
>UNIPROTKB|E2QYG0 [details] [associations]
symbol:E2QYG0 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005840 "ribosome" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] InterPro:IPR001790 Pfam:PF00466
GO:GO:0042254 GO:GO:0005840 GeneTree:ENSGT00390000006238
EMBL:AAEX03008678 Ensembl:ENSCAFT00000000827 OMA:FRSSEYS
Uniprot:E2QYG0
Length = 233
Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
Identities = 90/230 (39%), Positives = 121/230 (52%)
Query: 1 MPKSKRDRPVTLSXXXXXXXXXXEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
MP SK D+ V+L+ + ++ +R V+ YK +++FS NMRN + K+ R
Sbjct: 1 MPTSKHDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSELKDIRNPW 60
Query: 61 KPSRLLW---------VGRYPM-RYSQ-AYKVSKFLCGNTGLFLTNMPKEEVESLFNKYE 109
K SR+ + +GR P Y ++VSK L G GL TN KEE F KY
Sbjct: 61 KHSRVFFGKNKVMMVALGRSPADEYKDNLHQVSKKLKGEVGLLFTNRTKEEANEWFTKYT 120
Query: 110 DYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGK 169
+ DFA G+ AT V L GPLEQF H MEP LR+ G+P L +GVV L SD VC+ +
Sbjct: 121 EMDFAPAGNRATFTVTLHPGPLEQFPHSMEPQLRQLGLPTALKRGVVTLPSDHQVCKRAE 180
Query: 170 PLSPESARILRLLGIKMATFKLHLICRWSAED--FELYREGLDESDVESA 217
PL L+L +MA FK+ + W A+ F+ E L ES ESA
Sbjct: 181 PL-------LKLFRYEMAEFKVTIRYMWDAQSGRFQQMGEDLPESASESA 223
>UNIPROTKB|J9NSQ8 [details] [associations]
symbol:MRTO4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005840 "ribosome" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] InterPro:IPR001790 Pfam:PF00466
GO:GO:0042254 GO:GO:0005840 GeneTree:ENSGT00390000006238
EMBL:AAEX03001814 Ensembl:ENSCAFT00000047569 Uniprot:J9NSQ8
Length = 193
Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 85/183 (46%), Positives = 106/183 (57%)
Query: 48 MRNLKFKEFREQIKPSRLLW---------VGRYPM-RYSQ-AYKVSKFLCGNTGLFLTNM 96
MRN K K+ R K SR+ + +GR P Y ++VSK L G GL TN
Sbjct: 1 MRNSKLKDIRNAWKHSRMFFGKNKVMMVALGRSPADEYKDNLHQVSKKLKGEVGLLFTNR 60
Query: 97 PKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVV 156
KEEV F KY + DFAR G+ AT V L GPLEQF H MEP LR+ G+P L +GVV
Sbjct: 61 TKEEVNEWFTKYTEMDFARAGNKATFTVTLDPGPLEQFPHSMEPQLRQLGLPTALKRGVV 120
Query: 157 ELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLICRWSAED--FELYREGLDESDV 214
L+SD VC+EG L+PE AR+L+L G +MA FK+ + W A+ F+ E L ES
Sbjct: 121 TLLSDHEVCKEGDVLTPEQARVLKLFGYEMAEFKVTIRYMWDAQSGRFQQMGEDLPESAS 180
Query: 215 ESA 217
ESA
Sbjct: 181 ESA 183
>DICTYBASE|DDB_G0276411 [details] [associations]
symbol:mrt4 "mRNA turnover protein 4" species:44689
"Dictyostelium discoideum" [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR001790
Pfam:PF00466 dictyBase:DDB_G0276411 GO:GO:0005730
GenomeReviews:CM000151_GR GO:GO:0042254 EMBL:AAFI02000015
eggNOG:COG0244 KO:K14815 OMA:AWKHSRF RefSeq:XP_643104.1
STRING:Q86HD3 PRIDE:Q86HD3 EnsemblProtists:DDB0252706
GeneID:8620508 KEGG:ddi:DDB_G0276411 ProtClustDB:CLSZ2430892
Uniprot:Q86HD3
Length = 223
Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
Identities = 74/222 (33%), Positives = 122/222 (54%)
Query: 1 MPKSKRDRPVTLSXXXXXXXXXXEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
M KSKR+ V ++ + +V++I++ V+ YK IY+F+FENMRN K K R +
Sbjct: 1 MVKSKRNVVVNMTKVTKNPGEKKKKLVSTIKDIVDQYKFIYLFTFENMRNNKLKSVRTEW 60
Query: 61 KPSRLLW-------VGRYPMRYSQA----YKVSKFLCGNTGLFLTNMPKEEVESLFNKYE 109
S+ L+ VG + +K+++ L G GLF TN PK++V F Y
Sbjct: 61 STSKFLFGKNKVLSVGLGKSEEDELKPNLHKLTEHLEGECGLFFTNEPKDKVFEYFTNYS 120
Query: 110 DYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGK 169
+ DF R+G + E + + EGP+ TH ME +LR G+P L GV+ + ++ +CE G
Sbjct: 121 EKDFPRSGFVSEETITIKEGPIVGMTHSMETYLRGLGLPTTLKNGVIFVDREYTLCEAGV 180
Query: 170 PLSPESARILRLLGIKMATFKLHLICRWSAEDFELYREGLDE 211
++PE +++L+L +++ FK H+ W+ ++F L E E
Sbjct: 181 AVTPEQSQLLKLFNHEISEFKFHIKGFWNEDEFTLCEEESQE 222
>UNIPROTKB|G4MVM1 [details] [associations]
symbol:MGG_08908 "mRNA turnover protein 4" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR001790 Pfam:PF00466 GO:GO:0042254
GO:GO:0005840 EMBL:CM001232 KO:K14815 RefSeq:XP_003713937.1
EnsemblFungi:MGG_08908T0 GeneID:2679894 KEGG:mgr:MGG_08908
Uniprot:G4MVM1
Length = 251
Score = 170 (64.9 bits), Expect = 4.9e-24, Sum P(2) = 4.9e-24
Identities = 42/141 (29%), Positives = 66/141 (46%)
Query: 1 MPKSKRDRPVTLSXXXXXXXXXXEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
MPKSKR + V ++ E++ +IR V Y+ ++VFS +NMRN K+ R ++
Sbjct: 1 MPKSKRAKVVHMTNVAKKTREQKELLFTNIRECVPQYQHLFVFSVDNMRNNNLKDVRREL 60
Query: 61 KPSRLLWVGRYPMRY---------SQA---YKVSKFLCGNTGLFLTNMPKEEVESLFNKY 108
++ G+ + QA +K++ L G GL TN P E+ S +
Sbjct: 61 SGDSRMFFGKTKLMARALGQTAEDEQAEGLHKLTSHLAGTVGLIFTNRPASELLSYLDSI 120
Query: 109 EDYDFARTGSTATEKVELPEG 129
DFAR G+ A +P G
Sbjct: 121 TSVDFARAGAVAPRDFSIPPG 141
Score = 120 (47.3 bits), Expect = 4.9e-24, Sum P(2) = 4.9e-24
Identities = 30/87 (34%), Positives = 44/87 (50%)
Query: 125 ELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSD-------FVVCEEGKPLSPESAR 177
E+P+ H +EP LRK G+P RL KG V L + + VC EG L R
Sbjct: 149 EVPQEYDVPLAHSIEPELRKLGVPTRLIKGRVVLGGENGEGSTGYDVCREGDVLDSRQTR 208
Query: 178 ILRLLGIKMATFKLHLICRWSAEDFEL 204
+L+L + + FK+ ++ WSA E+
Sbjct: 209 LLKLFSVCFSEFKIQVLAYWSAATGEV 235
>POMBASE|SPBC11G11.03 [details] [associations]
symbol:mrt4 "mRNA turnover and ribosome assembly
protein Mrt4 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000027 "ribosomal large subunit assembly" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006364
"rRNA processing" evidence=ISO] [GO:0006402 "mRNA catabolic
process" evidence=ISO] InterPro:IPR001790 Pfam:PF00466
PomBase:SPBC11G11.03 GO:GO:0005730 EMBL:CU329671 GO:GO:0006402
GO:GO:0006364 GO:GO:0000027 eggNOG:COG0244 HOGENOM:HOG000177263
KO:K14815 OMA:AWKHSRF PIR:T39330 RefSeq:NP_595721.1 STRING:Q9USZ6
EnsemblFungi:SPBC11G11.03.1 GeneID:2539913 KEGG:spo:SPBC11G11.03
OrthoDB:EOG4KH643 NextBio:20801056 Uniprot:Q9USZ6
Length = 241
Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 53/149 (35%), Positives = 75/149 (50%)
Query: 80 KVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQ------ 133
K++K L G GL TN +EV F + DFAR G+ A +P GP+
Sbjct: 91 KLTKLLHGAVGLLFTNSKPDEVIGYFESFVQNDFARAGAVAPFTHVIPAGPVYSRAGQIP 150
Query: 134 ------FTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMA 187
TH +EP +R+ GMP L GVV L++DF +C EG+ L R+L+L GI A
Sbjct: 151 VEDDILLTHTLEPQVRQLGMPTVLKNGVVTLLADFPLCTEGQQLDSRQTRLLKLFGITAA 210
Query: 188 TFKLHLICRWSAE----DFELYREGLDES 212
FK+ L+ +S + +F G DE+
Sbjct: 211 EFKVGLLGYYSKKGASVEFLQSAPGADEA 239
Score = 152 (58.6 bits), Expect = 5.9e-11, P = 5.9e-11
Identities = 39/142 (27%), Positives = 65/142 (45%)
Query: 1 MPKSKRDRPVTLSXXXXXXXXXXEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
MPKS+R + +TL+ + + ++ +++++ +++F NMRN K R+
Sbjct: 1 MPKSRRSKVLTLAQTEKKGHEGKAALFSGVQQSLDSFDYMWIFDVTNMRNTYLKRIRDDW 60
Query: 61 KPSRLLW---------VGRYPMRY--SQAYKVSKFLCGNTGLFLTNMPKEEVESLFNKYE 109
K SR+ +G P K++K L G GL TN +EV F +
Sbjct: 61 KGSRIFMGKTKVMAKALGHTPEEEHAENVSKLTKLLHGAVGLLFTNSKPDEVIGYFESFV 120
Query: 110 DYDFARTGSTATEKVELPEGPL 131
DFAR G+ A +P GP+
Sbjct: 121 QNDFARAGAVAPFTHVIPAGPV 142
>UNIPROTKB|F1PCD5 [details] [associations]
symbol:F1PCD5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005840 "ribosome" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] InterPro:IPR001790 Pfam:PF00466
GO:GO:0042254 GO:GO:0005840 GeneTree:ENSGT00390000006238
EMBL:AAEX03016495 Ensembl:ENSCAFT00000014429 Uniprot:F1PCD5
Length = 197
Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 59/204 (28%), Positives = 98/204 (48%)
Query: 1 MPKSKRDRPVTLSXXXXXXXXXXEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
+PKS+ ++ V+L+ ++ +R V+ Y +++FS N++ +K
Sbjct: 1 VPKSEHNKKVSLTKTAKKGLELKRNLIEELRKCVDMYY-LFIFSVANVKKNAWKHSWMFF 59
Query: 61 KPSRLLWV--GRYPMR-YSQ-AYKVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFART 116
++++ V G P Y ++VSK L G L TN KEEV F K+ + DF R
Sbjct: 60 GKNKVMTVALGGSPFNDYKDNLHQVSKKLRGEVSLHFTNRTKEEVNGWFTKHMEMDFTRA 119
Query: 117 GSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESA 176
G+ T + L GPLEQ P+ + E+ S VC+EG+ L+P+ A
Sbjct: 120 GNQVTLTMSLDWGPLEQ--SPQSPWSHSR-----------EMCSQ-EVCKEGRVLTPKQA 165
Query: 177 RILRLLGIKMATFKLHLICRWSAE 200
R+ +L G +M FK+ + W A+
Sbjct: 166 RMPKLFGCEMTEFKVTIKNTWDAQ 189
>ASPGD|ASPL0000002010 [details] [associations]
symbol:AN6902 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0030687 "preribosome, large subunit precursor" evidence=IEA]
[GO:0000027 "ribosomal large subunit assembly" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IEA]
InterPro:IPR001790 Pfam:PF00466 GO:GO:0042254 GO:GO:0005840
EMBL:BN001301 EMBL:AACD01000113 eggNOG:COG0244 HOGENOM:HOG000177263
KO:K14815 OMA:AWKHSRF OrthoDB:EOG4KH643 RefSeq:XP_664506.1
STRING:Q5AXS8 EnsemblFungi:CADANIAT00007704 GeneID:2870607
KEGG:ani:AN6902.2 Uniprot:Q5AXS8
Length = 246
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 55/206 (26%), Positives = 101/206 (49%)
Query: 33 AVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWV--GRYPMRYS--QAYKVSKFLCGN 88
+V+N ++ Y+ +++R +F + R ++++ V G P + + ++ +L G
Sbjct: 45 SVDNMRNTYL---KDVRT-EFADSRLFFGKTKVMAVALGHNPETEAAENLHLLTPYLTGA 100
Query: 89 TGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEG---------PL---EQFTH 136
GL T+ V F+ + DFAR G+ AT +P G P E +H
Sbjct: 101 VGLLFTSRDPASVTDYFDAFRPLDFARAGTEATRSFSIPAGLVYSRAGEIPTSEDEPVSH 160
Query: 137 EMEPFLRKQGMPVRLNKGVVEL-VSD----FVVCEEGKPLSPESARILRLLGIKMATFKL 191
+EP LRK G+P RL KG V L ++D + VC++G+ L +L++ G++ + F++
Sbjct: 161 TIEPELRKLGVPTRLVKGKVMLELTDGQEGYPVCKKGEILDSRQTTLLKMFGVQTSEFRV 220
Query: 192 HLICRWSAED--FELYREGLDESDVE 215
L W+ E+ + +E +VE
Sbjct: 221 GLKAHWARATGKVEILEKNENEMEVE 246
Score = 151 (58.2 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 43/141 (30%), Positives = 63/141 (44%)
Query: 1 MPKSKRDRPVTLSXXXXXXXXX-XEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQ 59
MP+SKR R V S + +IR VE Y ++VFS +NMRN K+ R +
Sbjct: 1 MPRSKRARIVHESKTAKKSHKEQTRRLYANIRECVEKYDHLFVFSVDNMRNTYLKDVRTE 60
Query: 60 IKPSRLLW---------VGRYPMRYS--QAYKVSKFLCGNTGLFLTNMPKEEVESLFNKY 108
SRL + +G P + + ++ +L G GL T+ V F+ +
Sbjct: 61 FADSRLFFGKTKVMAVALGHNPETEAAENLHLLTPYLTGAVGLLFTSRDPASVTDYFDAF 120
Query: 109 EDYDFARTGSTATEKVELPEG 129
DFAR G+ AT +P G
Sbjct: 121 RPLDFARAGTEATRSFSIPAG 141
>CGD|CAL0001932 [details] [associations]
symbol:RPP0 species:5476 "Candida albicans" [GO:0030687
"preribosome, large subunit precursor" evidence=IEA] [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0070180 "LSU rRNA binding" evidence=IEA] [GO:0000027 "ribosomal
large subunit assembly" evidence=IEA] InterPro:IPR001790
InterPro:IPR001813 Pfam:PF00428 Pfam:PF00466 CGD:CAL0001932
GO:GO:0042254 GO:GO:0005840 GO:GO:0003735 EMBL:AACQ01000024
GO:GO:0006414 eggNOG:COG0244 KO:K02941 RefSeq:XP_720309.1
RefSeq:XP_888730.1 STRING:Q5AFQ4 GeneID:3638023 GeneID:3704214
KEGG:cal:CaO19.7015 KEGG:cal:CaO19_7015 Uniprot:Q5AFQ4
Length = 312
Score = 161 (61.7 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 46/181 (25%), Positives = 86/181 (47%)
Query: 28 NSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPM--RYSQAY------ 79
+ +R +E YKSI+V +N+ + + E R+ ++ ++ +G+ M R + +
Sbjct: 13 SKLRELLEEYKSIFVVGVDNVSSQQMHEIRKALRGDAVVLMGKNTMVRRAIRGFLSELPE 72
Query: 80 --KVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHE 137
K+ F+ GN G TN + + + AR G+ A + V +P G
Sbjct: 73 FEKLLPFIKGNVGFIFTNGDLKSIRDIVVSNVVAAPARAGAVAPKDVWIPAG-----NTG 127
Query: 138 MEP----FLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHL 193
MEP F + G+P ++ +G +E+VSD V E+ + P A +L +L I T+ + +
Sbjct: 128 MEPGKTSFFQALGVPTKIARGTIEIVSDVKVVEQDAKVGPSEATLLNMLNISPFTYGMSV 187
Query: 194 I 194
+
Sbjct: 188 V 188
>SGD|S000004332 [details] [associations]
symbol:RPP0 "Conserved ribosomal protein P0 of the ribosomal
stalk" species:4932 "Saccharomyces cerevisiae" [GO:0003735
"structural constituent of ribosome" evidence=IEA;TAS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0022625 "cytosolic
large ribosomal subunit" evidence=TAS] [GO:0002181 "cytoplasmic
translation" evidence=TAS] [GO:0006414 "translational elongation"
evidence=IEA;ISS] [GO:0005737 "cytoplasm" evidence=IEA;IDA]
[GO:0030687 "preribosome, large subunit precursor" evidence=IDA]
[GO:0070180 "LSU rRNA binding" evidence=IDA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0030686 "90S
preribosome" evidence=IDA] [GO:0000027 "ribosomal large subunit
assembly" evidence=IMP] InterPro:IPR001790 InterPro:IPR001813
Pfam:PF00428 Pfam:PF00466 SGD:S000004332 EMBL:BK006945
GO:GO:0003735 GO:GO:0002181 PDB:4B6A PDBsum:4B6A GO:GO:0030686
GO:GO:0000027 EMBL:U19028 PDB:3J16 PDBsum:3J16 GO:GO:0006414
GO:GO:0022625 eggNOG:COG0244 GO:GO:0070180 PDB:3IZS PDB:3O5H
PDB:3U5I PDBsum:3IZS PDBsum:3O5H PDBsum:3U5I HOGENOM:HOG000210987
KO:K02941 GeneTree:ENSGT00390000017839 OrthoDB:EOG4Z39PT
EMBL:X06959 EMBL:D00529 EMBL:X13328 EMBL:M26506 EMBL:M37326
PIR:S51343 RefSeq:NP_013444.1 ProteinModelPortal:P05317 SMR:P05317
DIP:DIP-1582N IntAct:P05317 MINT:MINT-384116 STRING:P05317
SWISS-2DPAGE:P05317 PaxDb:P05317 PeptideAtlas:P05317
EnsemblFungi:YLR340W GeneID:851052 KEGG:sce:YLR340W OMA:PILSTFG
NextBio:967667 Genevestigator:P05317 GermOnline:YLR340W
Uniprot:P05317
Length = 312
Score = 160 (61.4 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 47/179 (26%), Positives = 86/179 (48%)
Query: 30 IRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPM--RYSQAY-------- 79
+R +E YKS++V +N+ + + E R++++ ++ +G+ M R + +
Sbjct: 15 LREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSDLPDFE 74
Query: 80 KVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEME 139
K+ F+ GN G TN P E++++ AR G+ A E + + ME
Sbjct: 75 KLLPFVKGNVGFVFTNEPLTEIKNVIVSNRVAAPARAGAVAPEDIWV-----RAVNTGME 129
Query: 140 P----FLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLI 194
P F + G+P ++ +G +E+VSD V + G + A +L LL I TF L ++
Sbjct: 130 PGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGNKVGQSEASLLNLLNISPFTFGLTVV 188
>SGD|S000001492 [details] [associations]
symbol:MRT4 "Protein involved in mRNA turnover and ribosome
assembly" species:4932 "Saccharomyces cerevisiae" [GO:0042273
"ribosomal large subunit biogenesis" evidence=IMP;IPI] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0000956 "nuclear-transcribed mRNA
catabolic process" evidence=IMP] [GO:0070180 "LSU rRNA binding"
evidence=ISA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IGI;IMP] [GO:0030687 "preribosome, large subunit
precursor" evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0005622 "intracellular" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] InterPro:IPR001790
Pfam:PF00466 SGD:S000001492 GO:GO:0005654 GO:GO:0005730
EMBL:BK006944 GO:GO:0030687 GO:GO:0000956 EMBL:S53418 GO:GO:0006364
GO:GO:0000027 EMBL:X61398 EMBL:S59773 eggNOG:COG0244
GeneTree:ENSGT00390000006238 HOGENOM:HOG000177263 KO:K14815
OMA:AWKHSRF OrthoDB:EOG4KH643 EMBL:Z28009 PIR:S30013
RefSeq:NP_012916.1 ProteinModelPortal:P33201 SMR:P33201
DIP:DIP-5283N IntAct:P33201 MINT:MINT-573561 STRING:P33201
PaxDb:P33201 PeptideAtlas:P33201 EnsemblFungi:YKL009W GeneID:853860
KEGG:sce:YKL009W CYGD:YKL009w NextBio:975109 Genevestigator:P33201
GermOnline:YKL009W GO:GO:0070180 Uniprot:P33201
Length = 236
Score = 146 (56.5 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 39/126 (30%), Positives = 61/126 (48%)
Query: 79 YKVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEG--------- 129
Y++SK G TGL T+ V+ F Y D++R + A +PEG
Sbjct: 90 YQLSKLCSGVTGLLFTDEDVNTVKEYFKSYVRSDYSRPNTKAPLTFTIPEGIVYSRGGQI 149
Query: 130 PLEQ---FTHEMEPFLR-KQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIK 185
P E+ H +EP +R K +P ++ G + + S ++VC EG+ L A IL+ GI
Sbjct: 150 PAEEDVPMIHSLEPTMRNKFEIPTKIKAGKITIDSPYLVCTEGEKLDVRQALILKQFGIA 209
Query: 186 MATFKL 191
+ FK+
Sbjct: 210 ASEFKV 215
Score = 134 (52.2 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 38/140 (27%), Positives = 65/140 (46%)
Query: 1 MPKSKRDRPVTLSXXXXXXXXXXEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
MP+SKR + VTL+ E I + +R A++ Y+ ++V +++R +E R
Sbjct: 1 MPRSKRSKLVTLAQTDKKGRENKERIFDEVREALDTYRYVWVLHLDDVRTPVLQEIRTSW 60
Query: 61 KPSRLLWVGRYPMR----------YSQ-AYKVSKFLCGNTGLFLTNMPKEEVESLFNKYE 109
S+L+ R ++ Y + Y++SK G TGL T+ V+ F Y
Sbjct: 61 AGSKLIMGKRKVLQKALGEKREEEYKENLYQLSKLCSGVTGLLFTDEDVNTVKEYFKSYV 120
Query: 110 DYDFARTGSTATEKVELPEG 129
D++R + A +PEG
Sbjct: 121 RSDYSRPNTKAPLTFTIPEG 140
>ASPGD|ASPL0000036346 [details] [associations]
symbol:AN2734 species:162425 "Emericella nidulans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006414 "translational
elongation" evidence=IEA] [GO:0030686 "90S preribosome"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0030687
"preribosome, large subunit precursor" evidence=IEA] [GO:0070180
"LSU rRNA binding" evidence=IEA] [GO:0000027 "ribosomal large
subunit assembly" evidence=IEA] InterPro:IPR001790
InterPro:IPR001813 Pfam:PF00428 Pfam:PF00466 EMBL:BN001306
GO:GO:0042254 GO:GO:0005840 GO:GO:0003735 GO:GO:0006414
eggNOG:COG0244 HOGENOM:HOG000210987 KO:K02941 OMA:AYMHAFN
EMBL:AACD01000048 RefSeq:XP_660338.1 STRING:Q5B9P6
EnsemblFungi:CADANIAT00010379 GeneID:2874227 KEGG:ani:AN2734.2
Uniprot:Q5B9P6
Length = 312
Score = 138 (53.6 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 40/174 (22%), Positives = 80/174 (45%)
Query: 30 IRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPM--RYSQAY-------- 79
++N ++ YK++++ +N+ + + E R ++ ++ +G+ M R + +
Sbjct: 15 LKNLLDEYKTVFIVGVDNVSSQQMHEIRIALRGEGVVLMGKNTMVRRALKGFINDNPEYE 74
Query: 80 KVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEME 139
++ + GN G TN +E + AR G+ A V +P G ME
Sbjct: 75 RLLPHVKGNVGFIFTNGDLKETKDKILSNRVAAPARAGAVAPADVWIPAG-----NTGME 129
Query: 140 P----FLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATF 189
P F + G+P ++ +G +E+ +D + EEG + P A +L +L I T+
Sbjct: 130 PGKTSFFQALGVPTKIARGTIEITTDLKLVEEGNKVGPSEATLLNMLNISPFTY 183
>CGD|CAL0006176 [details] [associations]
symbol:MRT4 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0035690 "cellular response to
drug" evidence=IMP] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0030687 "preribosome,
large subunit precursor" evidence=IEA] [GO:0000027 "ribosomal large
subunit assembly" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=IEA] InterPro:IPR001790 Pfam:PF00466
CGD:CAL0006176 GO:GO:0042254 GO:GO:0005840 GO:GO:0035690
EMBL:AACQ01000034 EMBL:AACQ01000033 eggNOG:COG0244
HOGENOM:HOG000177263 KO:K14815 RefSeq:XP_719113.1
RefSeq:XP_719230.1 STRING:Q5AC00 GeneID:3639102 GeneID:3639219
KEGG:cal:CaO19.12996 KEGG:cal:CaO19.5550 Uniprot:Q5AC00
Length = 230
Score = 131 (51.2 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 37/135 (27%), Positives = 63/135 (46%)
Query: 79 YKVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEG--------- 129
+++SK G GL T+ E VE+ F Y D++R S A +P G
Sbjct: 90 HQLSKLCEGLPGLLFTDESPETVEAYFKAYSKQDYSRAKSRAPIDFTIPAGIVYSRGGQI 149
Query: 130 PLEQ---FTHEMEPFLR-KQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIK 185
+E+ +H +E LR K +P ++ G + L +VVC +G L A +L+ G+
Sbjct: 150 SIEEDVPMSHSLEETLRNKLKVPTKIKAGKIILEEPYVVCNKGDVLDTRQALLLKQFGVA 209
Query: 186 MATFKLHLICRWSAE 200
+ FK+ ++ + E
Sbjct: 210 ASEFKIPILGYYDGE 224
Score = 126 (49.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 38/140 (27%), Positives = 66/140 (47%)
Query: 1 MPKSKRDRPVTLSXXXXXXXXXXEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
MP+SKR + VTL+ + + +R+A++ +K I+V F+++R ++ R
Sbjct: 1 MPRSKRSKLVTLAQTEKKGKENKTRLFDEVRSALDTFKYIWVLQFDDIRTPVLQDVRNDW 60
Query: 61 KPSRLLWVGRYPMRYS------QAYK-----VSKFLCGNTGLFLTNMPKEEVESLFNKYE 109
S+L+ R ++ + + YK +SK G GL T+ E VE+ F Y
Sbjct: 61 VGSKLILGKRKVLQKALGETIEEEYKDNLHQLSKLCEGLPGLLFTDESPETVEAYFKAYS 120
Query: 110 DYDFARTGSTATEKVELPEG 129
D++R S A +P G
Sbjct: 121 KQDYSRAKSRAPIDFTIPAG 140
>UNIPROTKB|Q5AC00 [details] [associations]
symbol:MRT4 "Potential rRNA processing factor"
species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] [GO:0035690 "cellular response to
drug" evidence=IMP] InterPro:IPR001790 Pfam:PF00466 CGD:CAL0006176
GO:GO:0042254 GO:GO:0005840 GO:GO:0035690 EMBL:AACQ01000034
EMBL:AACQ01000033 eggNOG:COG0244 HOGENOM:HOG000177263 KO:K14815
RefSeq:XP_719113.1 RefSeq:XP_719230.1 STRING:Q5AC00 GeneID:3639102
GeneID:3639219 KEGG:cal:CaO19.12996 KEGG:cal:CaO19.5550
Uniprot:Q5AC00
Length = 230
Score = 131 (51.2 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 37/135 (27%), Positives = 63/135 (46%)
Query: 79 YKVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEG--------- 129
+++SK G GL T+ E VE+ F Y D++R S A +P G
Sbjct: 90 HQLSKLCEGLPGLLFTDESPETVEAYFKAYSKQDYSRAKSRAPIDFTIPAGIVYSRGGQI 149
Query: 130 PLEQ---FTHEMEPFLR-KQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIK 185
+E+ +H +E LR K +P ++ G + L +VVC +G L A +L+ G+
Sbjct: 150 SIEEDVPMSHSLEETLRNKLKVPTKIKAGKIILEEPYVVCNKGDVLDTRQALLLKQFGVA 209
Query: 186 MATFKLHLICRWSAE 200
+ FK+ ++ + E
Sbjct: 210 ASEFKIPILGYYDGE 224
Score = 126 (49.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 38/140 (27%), Positives = 66/140 (47%)
Query: 1 MPKSKRDRPVTLSXXXXXXXXXXEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
MP+SKR + VTL+ + + +R+A++ +K I+V F+++R ++ R
Sbjct: 1 MPRSKRSKLVTLAQTEKKGKENKTRLFDEVRSALDTFKYIWVLQFDDIRTPVLQDVRNDW 60
Query: 61 KPSRLLWVGRYPMRYS------QAYK-----VSKFLCGNTGLFLTNMPKEEVESLFNKYE 109
S+L+ R ++ + + YK +SK G GL T+ E VE+ F Y
Sbjct: 61 VGSKLILGKRKVLQKALGETIEEEYKDNLHQLSKLCEGLPGLLFTDESPETVEAYFKAYS 120
Query: 110 DYDFARTGSTATEKVELPEG 129
D++R S A +P G
Sbjct: 121 KQDYSRAKSRAPIDFTIPAG 140
>POMBASE|SPCC18.14c [details] [associations]
symbol:rpp0 "60S acidic ribosomal protein Rpp0
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0002182
"cytoplasmic translational elongation" evidence=NAS] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0005829
"cytosol" evidence=IDA] [GO:0022626 "cytosolic ribosome"
evidence=NAS] [GO:0042254 "ribosome biogenesis" evidence=IEA]
InterPro:IPR001790 InterPro:IPR001813 Pfam:PF00428 Pfam:PF00466
PomBase:SPCC18.14c EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0042254 GO:GO:0003735 GO:GO:0022626 GO:GO:0002182
eggNOG:COG0244 HOGENOM:HOG000210987 KO:K02941 OMA:AYMHAFN
PIR:T41157 RefSeq:NP_588393.1 ProteinModelPortal:O74864 SMR:O74864
IntAct:O74864 STRING:O74864 PRIDE:O74864 EnsemblFungi:SPCC18.14c.1
GeneID:2538893 KEGG:spo:SPCC18.14c OrthoDB:EOG4Z39PT
NextBio:20800072 Uniprot:O74864
Length = 312
Score = 119 (46.9 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 43/179 (24%), Positives = 80/179 (44%)
Query: 30 IRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVG-----RYPMR--YSQAYKVS 82
+R+ E Y S++V + +N+ + + R+Q++ + L +G R MR + ++
Sbjct: 15 LRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGIINDMPELE 74
Query: 83 KFLC---GNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEME 139
+ L GN G TN +EV AR + A V +P G ME
Sbjct: 75 RLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAG-----NTGME 129
Query: 140 P----FLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLI 194
P F + G+P ++ +G +E+ SD + + + P A +L +L I T+ + ++
Sbjct: 130 PGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDVL 188
>TAIR|locus:2061231 [details] [associations]
symbol:AT2G40010 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005840 "ribosome" evidence=IEA;ISS] [GO:0006412
"translation" evidence=ISS] [GO:0006414 "translational elongation"
evidence=IEA;ISS] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0022626 "cytosolic ribosome" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0001510 "RNA methylation" evidence=RCA] InterPro:IPR001790
InterPro:IPR001813 Pfam:PF00428 Pfam:PF00466
EnsemblPlants:AT2G40010.1 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0042254 GO:GO:0003735 GO:GO:0022626 EMBL:AF002109
GO:GO:0006414 eggNOG:COG0244 EMBL:BT001919 IPI:IPI00525504
PIR:B84824 RefSeq:NP_181530.1 UniGene:At.28353 UniGene:At.49578
ProteinModelPortal:O04204 SMR:O04204 IntAct:O04204 STRING:O04204
GeneID:818589 KEGG:ath:AT2G40010 TAIR:At2g40010
HOGENOM:HOG000210987 InParanoid:O04204 KO:K02941 OMA:APIFEKD
PhylomeDB:O04204 ProtClustDB:CLSN2683388 Genevestigator:O04204
GermOnline:AT2G40010 Uniprot:O04204
Length = 317
Score = 108 (43.1 bits), Expect = 0.00081, P = 0.00081
Identities = 39/170 (22%), Positives = 74/170 (43%)
Query: 34 VENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPMRY-----------SQAY-KV 81
+ Y I V + +N+ + + + R+ ++ ++ +G+ M +QA+ +
Sbjct: 22 LNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHADKTGNQAFLSL 81
Query: 82 SKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPF 141
L GN GL T +EV KY+ AR G A V + G F
Sbjct: 82 LPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTG-LDPSQTSF 140
Query: 142 LRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKL 191
+ +P ++NKG VE+++ + ++G + A +L LGI+ ++ L
Sbjct: 141 FQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGL 190
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.136 0.395 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 217 207 0.00099 111 3 11 22 0.50 32
31 0.47 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 27
No. of states in DFA: 586 (62 KB)
Total size of DFA: 166 KB (2099 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 19.98u 0.13s 20.11t Elapsed: 00:00:01
Total cpu time: 19.98u 0.13s 20.11t Elapsed: 00:00:01
Start: Fri May 10 05:32:14 2013 End: Fri May 10 05:32:15 2013