BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035720
         (217 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3IZS|SS Chain s, Localization Of The Large Subunit Ribosomal Proteins Into
           A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
           Translating 80s Ribosome
 pdb|3J16|G Chain G, Models Of Ribosome-Bound Dom34p And Rli1p And Their
           Ribosomal Binding Partners
          Length = 312

 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 19/179 (10%)

Query: 30  IRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPM--RYSQAY-------- 79
           +R  +E YKS++V   +N+ + +  E R++++   ++ +G+  M  R  + +        
Sbjct: 15  LREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSDLPDFE 74

Query: 80  KVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEME 139
           K+  F+ GN G   TN P  E++++         AR G+ A E + +           ME
Sbjct: 75  KLLPFVKGNVGFVFTNEPLTEIKNVIVSNRVAAPARAGAVAPEDIWV-----RAVNTGME 129

Query: 140 P----FLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLI 194
           P    F +  G+P ++ +G +E+VSD  V + G  +    A +L LL I   TF L ++
Sbjct: 130 PGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGNKVGQSEASLLNLLNISPFTFGLTVV 188


>pdb|3U5I|QQ Chain q, The Structure Of The Eukaryotic Ribosome At 3.0 A
           Resolution. This Entry Contains Proteins Of The 60s
           Subunit, Ribosome B
 pdb|4B6A|QQ Chain q, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex
           With Arx1 And Rei1
          Length = 312

 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 19/179 (10%)

Query: 30  IRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPM--RYSQAY-------- 79
           +R  +E YKS++V   +N+ + +  E R++++   ++ +G+  M  R  + +        
Sbjct: 15  LREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSDLPDFE 74

Query: 80  KVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEME 139
           K+  F+ GN G   TN P  E++++         AR G+ A E + +           ME
Sbjct: 75  KLLPFVKGNVGFVFTNEPLTEIKNVIVSNRVAAPARAGAVAPEDIWV-----RAVNTGME 129

Query: 140 P----FLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLI 194
           P    F +  G+P ++ +G +E+VSD  V + G  +    A +L LL I   TF L ++
Sbjct: 130 PGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGNKVGQSEASLLNLLNISPFTFGLTVV 188


>pdb|3O5H|M Chain M, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
           Of The Second 80s In The Asymmetric Unit
          Length = 312

 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 85/179 (47%), Gaps = 19/179 (10%)

Query: 30  IRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPM--RYSQAY-------- 79
           +R  +E YKS++V   +N+ + +  E R++++   ++ +G+  M  R  + +        
Sbjct: 15  LREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSDLPDFE 74

Query: 80  KVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEME 139
           K+  F+ G  G   TN P  E++++         AR G+ A E + +           ME
Sbjct: 75  KLLPFVKGYVGFVFTNEPLTEIKNVIVSNRVAAPARAGAVAPEDIWV-----RAVNTGME 129

Query: 140 P----FLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLI 194
           P    F +  G+P ++ +G +E+VSD  V + G  +    A +L LL I   TF L ++
Sbjct: 130 PGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGNKVGQSEASLLNLLNISPFTFGLTVV 188


>pdb|3J21|KK Chain k, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
           Revealed By Cryo-em: Implications For Evolution Of
           Eukaryotic Ribosomes (50s Ribosomal Proteins)
          Length = 339

 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 88/203 (43%), Gaps = 18/203 (8%)

Query: 27  VNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSR-LLWVGRYPMRYSQAYKVSK-- 83
           V  + N +++Y  + +    +M      + R  I+ +  LL V R  +      KV++  
Sbjct: 12  VEELANLIKSYPVVALVDVSSMPAYPLSQMRRLIRENNGLLRVSRNTLIELAIKKVAQEL 71

Query: 84  ----------FLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQ 133
                     ++ G  G+ +T M   ++     +      A+ G+   + V +P GP   
Sbjct: 72  GKPELEKLINYIEGGAGILVTTMNPFKLYKFLQQNRQPAPAKPGAKVPKDVVIPAGPTSL 131

Query: 134 FTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHL 193
               +   ++  G+P R+ +G V +  D VV + G+ ++PE A IL  LGI+     L L
Sbjct: 132 APGPIVGQMQAMGIPARIERGKVTIQKDTVVLKAGEEITPELANILNALGIQPLEVGLDL 191

Query: 194 ICRWSAEDFELYRE---GLDESD 213
           +  +  ED  +Y      +DES+
Sbjct: 192 LAVY--EDGIIYTPDVLAIDESE 212


>pdb|3A1Y|G Chain G, The Structure Of Protein Complex
          Length = 284

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 2/126 (1%)

Query: 80  KVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEME 139
           K+ +++    G+ +TNM   ++     +      A+ G+   + V +P GP       + 
Sbjct: 78  KLVEYIDRGAGILVTNMNPFKLYKFLQQNRQPAPAKPGAVVPKDVVVPAGPTPLAPGPIV 137

Query: 140 PFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLICRWSA 199
             ++  G+P R+ KG V +  D  V + G+ ++PE A IL  LGI+     L ++  +  
Sbjct: 138 GQMQALGIPARIEKGKVTIQKDTTVLKAGEVITPELANILNALGIQPLEVGLDVLAVY-- 195

Query: 200 EDFELY 205
           ED  +Y
Sbjct: 196 EDGIVY 201


>pdb|1JJ2|G Chain G, Fully Refined Crystal Structure Of The Haloarcula
           Marismortui Large Ribosomal Subunit At 2.4 Angstrom
           Resolution
 pdb|1KQS|G Chain G, The Haloarcula Marismortui 50s Complexed With A
           Pretranslocational Intermediate In Protein Synthesis
 pdb|1K8A|I Chain I, Co-Crystal Structure Of Carbomycin A Bound To The 50s
           Ribosomal Subunit Of Haloarcula Marismortui
 pdb|1K9M|I Chain I, Co-Crystal Structure Of Tylosin Bound To The 50s Ribosomal
           Subunit Of Haloarcula Marismortui
 pdb|1KD1|I Chain I, Co-crystal Structure Of Spiramycin Bound To The 50s
           Ribosomal Subunit Of Haloarcula Marismortui
 pdb|1M1K|I Chain I, Co-Crystal Structure Of Azithromycin Bound To The 50s
           Ribosomal Subunit Of Haloarcula Marismortui
 pdb|1M90|I Chain I, Co-Crystal Structure Of Cca-Phe-Caproic Acid-Biotin And
           Sparsomycin Bound To The 50s Ribosomal Subunit
 pdb|1K73|I Chain I, Co-Crystal Structure Of Anisomycin Bound To The 50s
           Ribosomal Subunit
 pdb|1KC8|I Chain I, Co-Crystal Structure Of Blasticidin S Bound To The 50s
           Ribosomal Subunit
 pdb|1N8R|I Chain I, Structure Of Large Ribosomal Subunit In Complex With
           Virginiamycin M
 pdb|1NJI|I Chain I, Structure Of Chloramphenicol Bound To The 50s Ribosomal
           Subunit
 pdb|1Q7Y|I Chain I, Crystal Structure Of Ccdap-puromycin Bound At The Peptidyl
           Transferase Center Of The 50s Ribosomal Subunit
 pdb|1Q81|I Chain I, Crystal Structure Of Minihelix With 3' Puromycin Bound To
           A- Site Of The 50s Ribosomal Subunit.
 pdb|1Q82|I Chain I, Crystal Structure Of Cc-Puromycin Bound To The A-Site Of
           The 50s Ribosomal Subunit
 pdb|1Q86|I Chain I, Crystal Structure Of Cca-Phe-Cap-Biotin Bound
           Simultaneously At Half Occupancy To Both The A-Site And
           P- Site Of The The 50s Ribosomal Subunit.
 pdb|1QVF|G Chain G, Structure Of A Deacylated Trna Minihelix Bound To The E
           Site Of The Large Ribosomal Subunit Of Haloarcula
           Marismortui
 pdb|1QVG|G Chain G, Structure Of Cca Oligonucleotide Bound To The Trna Binding
           Sites Of The Large Ribosomal Subunit Of Haloarcula
           Marismortui
 pdb|1S72|G Chain G, Refined Crystal Structure Of The Haloarcula Marismortui
           Large Ribosomal Subunit At 2.4 Angstrom Resolution
 pdb|1W2B|G Chain G, Trigger Factor Ribosome Binding Domain In Complex With 50s
 pdb|1YHQ|G Chain G, Crystal Structure Of Azithromycin Bound To The G2099a
           Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
 pdb|1YI2|G Chain G, Crystal Structure Of Erythromycin Bound To The G2099a
           Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
 pdb|1YIJ|G Chain G, Crystal Structure Of Telithromycin Bound To The G2099a
           Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
 pdb|1YIT|G Chain G, Crystal Structure Of Virginiamycin M And S Bound To The
           50s Ribosomal Subunit Of Haloarcula Marismortui
 pdb|1YJ9|G Chain G, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of
           Haloarcula Marismortui Containing A Three Residue
           Deletion In L22
 pdb|1YJN|G Chain G, Crystal Structure Of Clindamycin Bound To The G2099a
           Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
 pdb|1YJW|G Chain G, Crystal Structure Of Quinupristin Bound To The G2099a
           Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
 pdb|1VQ4|G Chain G, The Structure Of The Transition State Analogue "daa" Bound
           To The Large Ribosomal Subunit Of Haloarcula Marismortui
 pdb|1VQ5|G Chain G, The Structure Of The Transition State Analogue "raa" Bound
           To The Large Ribosomal Subunit Of Haloarcula Marismortui
 pdb|1VQ6|G Chain G, The Structure Of C-Hpmn And Cca-Phe-Cap-Bio Bound To The
           Large Ribosomal Subunit Of Haloarcula Marismortui
 pdb|1VQ7|G Chain G, The Structure Of The Transition State Analogue "dca" Bound
           To The Large Ribosomal Subunit Of Haloarcula Marismortui
 pdb|1VQ8|G Chain G, The Structure Of Ccda-Phe-Cap-Bio And The Antibiotic
           Sparsomycin Bound To The Large Ribosomal Subunit Of
           Haloarcula Marismortui
 pdb|1VQ9|G Chain G, The Structure Of Cca-Phe-Cap-Bio And The Antibiotic
           Sparsomycin Bound To The Large Ribosomal Subunit Of
           Haloarcula Marismortui
 pdb|1VQK|G Chain G, The Structure Of Ccda-Phe-Cap-Bio Bound To The A Site Of
           The Ribosomal Subunit Of Haloarcula Marismortui
 pdb|1VQL|G Chain G, The Structure Of The Transition State Analogue "dcsn"
           Bound To The Large Ribosomal Subunit Of Haloarcula
           Marismortui
 pdb|1VQM|G Chain G, The Structure Of The Transition State Analogue "dan" Bound
           To The Large Ribosomal Subunit Of Haloarcula Marismortui
 pdb|1VQN|G Chain G, The Structure Of Cc-hpmn And Cca-phe-cap-bio Bound To The
           Large Ribosomal Subunit Of Haloarcula Marismortui
 pdb|1VQO|G Chain G, The Structure Of Ccpmn Bound To The Large Ribosomal
           Subunit Haloarcula Marismortui
 pdb|1VQP|G Chain G, The Structure Of The Transition State Analogue "rap" Bound
           To The Large Ribosomal Subunit Of Haloarcula Marismortui
 pdb|2OTJ|G Chain G, 13-Deoxytedanolide Bound To The Large Subunit Of
           Haloarcula Marismortui
 pdb|2OTL|G Chain G, Girodazole Bound To The Large Subunit Of Haloarcula
           Marismortui
 pdb|2QA4|G Chain G, A More Complete Structure Of The The L7L12 STALK OF THE
           Haloarcula Marismortui 50s Large Ribosomal Subunit
 pdb|3CME|G Chain G, The Structure Of Ca And Cca-Phe-Cap-Bio Bound To The Large
           Ribosomal Subunit Of Haloarcula Marismortui
 pdb|2QEX|G Chain G, Negamycin Binds To The Wall Of The Nascent Chain Exit
           Tunnel Of The 50s Ribosomal Subunit
 pdb|3CXC|G Chain G, The Structure Of An Enhanced Oxazolidinone Inhibitor Bound
           To The 50s Ribosomal Subunit Of H. Marismortui
          Length = 348

 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 83/183 (45%), Gaps = 25/183 (13%)

Query: 27  VNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPMRYSQAYKVSK--- 83
           V++I   +E+Y+S+ V +   + + + ++ R  +  +  L V R  +       V     
Sbjct: 20  VDAIVEMIESYESVGVVNIAGIPSRQLQDMRRDLHGTAELRVSRNTLLERALDDVDDGLE 79

Query: 84  ----FLCGNTGLFLTNMPKEEVESLFNKYEDYDFART------GSTATEKVELPEGPLEQ 133
               ++ G  GL  T+      ++ F+ +++ + ++T      G  A   + +PEG    
Sbjct: 80  DLNGYITGQVGLIGTD------DNPFSLFQELEASKTPAPIGAGEVAPNDIVIPEG---D 130

Query: 134 FTHEMEPF---LRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFK 190
              +  PF   L+  G   R+ +G ++++SD  V + G+ +S E + +L  LGI+     
Sbjct: 131 TGVDPGPFVGELQSVGADARIQEGSIQVLSDSTVLDTGEEVSQELSNVLNELGIEPKEVG 190

Query: 191 LHL 193
           L L
Sbjct: 191 LDL 193


>pdb|3CC2|G Chain G, The Refined Crystal Structure Of The Haloarcula
           Marismortui Large Ribosomal Subunit At 2.4 Angstrom
           Resolution With Rrna Sequence For The 23s Rrna And
           Genome-Derived Sequences For R-Proteins
 pdb|3CC4|G Chain G, Co-Crystal Structure Of Anisomycin Bound To The 50s
           Ribosomal Subunit
 pdb|3CC7|G Chain G, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation C2487u
 pdb|3CCE|G Chain G, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation U2535a
 pdb|3CCJ|G Chain G, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation C2534u
 pdb|3CCL|G Chain G, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation U2535c. Density For Anisomycin Is
           Visible But Not Included In Model.
 pdb|3CCM|G Chain G, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation G2611u
 pdb|3CCQ|G Chain G, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation A2488u
 pdb|3CCR|G Chain G, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation A2488c. Density For Anisomycin Is
           Visible But Not Included In The Model.
 pdb|3CCS|G Chain G, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation G2482a
 pdb|3CCU|G Chain G, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation G2482c
 pdb|3CCV|G Chain G, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation G2616a
 pdb|3CD6|G Chain G, Co-cystal Of Large Ribosomal Subunit Mutant G2616a With
           Cc-puromycin
 pdb|3CPW|G Chain G, The Structure Of The Antibiotic Linezolid Bound To The
           Large Ribosomal Subunit Of Haloarcula Marismortui
 pdb|3CMA|G Chain G, The Structure Of Cca And Cca-Phe-Cap-Bio Bound To The
           Large Ribosomal Subunit Of Haloarcula Marismortui
 pdb|3G4S|G Chain G, Co-Crystal Structure Of Tiamulin Bound To The Large
           Ribosomal Subunit
 pdb|3G6E|G Chain G, Co-Crystal Structure Of Homoharringtonine Bound To The
           Large Ribosomal Subunit
 pdb|3G71|G Chain G, Co-crystal Structure Of Bruceantin Bound To The Large
           Ribosomal Subunit
 pdb|3I55|G Chain G, Co-Crystal Structure Of Mycalamide A Bound To The Large
           Ribosomal Subunit
 pdb|3I56|G Chain G, Co-Crystal Structure Of Triacetyloleandomcyin Bound To The
           Large Ribosomal Subunit
          Length = 348

 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 83/183 (45%), Gaps = 25/183 (13%)

Query: 27  VNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPMRYSQAYKVSK--- 83
           V++I   +E+Y+S+ V +   + + + ++ R  +  +  L V R  +       V     
Sbjct: 20  VDAIVEMIESYESVGVVNIAGIPSRQLQDMRRDLHGTAELRVSRNTLLERALDDVDDGLE 79

Query: 84  ----FLCGNTGLFLTNMPKEEVESLFNKYEDYDFART------GSTATEKVELPEGPLEQ 133
               ++ G  GL  T+      ++ F+ +++ + ++T      G  A   + +PEG    
Sbjct: 80  DLNGYITGQVGLIGTD------DNPFSLFQELEASKTPAPIGAGEVAPNDIVIPEG---D 130

Query: 134 FTHEMEPF---LRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFK 190
              +  PF   L+  G   R+ +G ++++SD  V + G+ +S E + +L  LGI+     
Sbjct: 131 TGVDPGPFVGELQSVGADARIQEGSIQVLSDSTVLDTGEEVSQELSNVLNELGIEPKEVG 190

Query: 191 LHL 193
           L L
Sbjct: 191 LDL 193


>pdb|3IZR|SS Chain s, Localization Of The Large Subunit Ribosomal Proteins Into
           A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
           Ribosome
          Length = 319

 Score = 39.3 bits (90), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/171 (21%), Positives = 74/171 (43%), Gaps = 15/171 (8%)

Query: 34  VENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPMRYSQAYKVSK---------- 83
           ++ Y  + +   +N+ + + +E R+ ++   ++ +G+  +   +  KV            
Sbjct: 22  LDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTL-IRRCIKVHADNTGNKEFLE 80

Query: 84  ---FLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEP 140
               L GN GL  T    +EV     KY+    AR G  A   V +P G           
Sbjct: 81  LMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGN-TGLDPSQTS 139

Query: 141 FLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKL 191
           F +   +P ++NKG VE+++   + ++G  +    + +L  LGI+  ++ L
Sbjct: 140 FFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGL 190


>pdb|3JYW|8 Chain 8, Structure Of The 60s Proteins For Eukaryotic Ribosome
           Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome
           At 8.9a Resolution
          Length = 118

 Score = 32.3 bits (72), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 20/85 (23%), Positives = 44/85 (51%), Gaps = 10/85 (11%)

Query: 30  IRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPM--RYSQAY-------- 79
           +R  +E YKS++V   +N+ + +  E R++++   ++ +G+  M  R  + +        
Sbjct: 13  LREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSDLPDFE 72

Query: 80  KVSKFLCGNTGLFLTNMPKEEVESL 104
           K+  F+ G  G   TN P  E++++
Sbjct: 73  KLLPFVKGYVGFVFTNEPLTEIKNV 97


>pdb|3HL3|A Chain A, 2.76 Angstrom Crystal Structure Of A Putative
           Glucose-1-Phosphate Thymidylyltransferase From Bacillus
           Anthracis In Complex With A Sucrose.
 pdb|4ECM|A Chain A, 2.3 Angstrom Crystal Structure Of A Glucose-1-Phosphate
           Thymidylyltransferase From Bacillus Anthracis In Complex
           With Thymidine-5-Diphospho-Alpha-D-Glucose And
           Pyrophosphate
          Length = 269

 Score = 29.6 bits (65), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 9/99 (9%)

Query: 59  QIKPSRLLWVGRYPMRYSQAYKVSKFLCGNTGLFLTNMPKE--EVESLFNKYEDYDFART 116
           ++    LL VGRYPM Y   YK+ +  C  T + +    +   +V S     +++     
Sbjct: 43  KVTNKHLLPVGRYPMIYHAVYKLKQ--CDITDIMIITGKEHMGDVVSFLGSGQEF----- 95

Query: 117 GSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGV 155
           G + T +V+   G + Q     E F+    M V L   +
Sbjct: 96  GVSFTYRVQDKAGGIAQALGLCEDFVGNDRMVVILGDNI 134


>pdb|3JSY|A Chain A, N-Terminal Fragment Of Ribosomal Protein L10 From
           Methanococ Jannaschii
 pdb|3JSY|B Chain B, N-Terminal Fragment Of Ribosomal Protein L10 From
           Methanococ Jannaschii
          Length = 213

 Score = 28.9 bits (63), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 14/89 (15%)

Query: 117 GSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESA 176
           GST      +P GP   F  E    L+  G+P  + KG + +  D VV ++G+ +SP+ A
Sbjct: 123 GSTG-----MPPGP---FLGE----LKSVGIPAAIEKGKIAIKEDKVVVKKGEVVSPKLA 170

Query: 177 RILRLLGIKMATFKLHLICRWSAEDFELY 205
            +L  LGIK     L+++  +  ED  +Y
Sbjct: 171 AVLDRLGIKPIKVGLNILAVY--EDGIIY 197


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.136    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,992,674
Number of Sequences: 62578
Number of extensions: 235988
Number of successful extensions: 540
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 524
Number of HSP's gapped (non-prelim): 13
length of query: 217
length of database: 14,973,337
effective HSP length: 95
effective length of query: 122
effective length of database: 9,028,427
effective search space: 1101468094
effective search space used: 1101468094
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)