BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035720
(217 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A4FV84|MRT4_BOVIN mRNA turnover protein 4 homolog OS=Bos taurus GN=MRTO4 PE=2 SV=1
Length = 239
Score = 187 bits (476), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 136/224 (60%), Gaps = 17/224 (7%)
Query: 1 MPKSKRDRPVTLSKTKKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
MPKSKRD+ V+L+KT KKG E K+ ++ +R V+ YK +++FS NMRN K K+ R
Sbjct: 1 MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60
Query: 61 KPSRLLW---------VGRYPMRYSQAYK-----VSKFLCGNTGLFLTNMPKEEVESLFN 106
K SR+ + +GR P S YK VSK L G GL TN KEEV+ F
Sbjct: 61 KHSRMFFGKNKVMMVALGRSP---SDEYKDNLHQVSKKLRGEVGLLFTNRTKEEVDEWFT 117
Query: 107 KYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCE 166
KY + D+AR G+ AT V L GPLEQF H MEP LR+ G+P L KGVV L+SD+ VC+
Sbjct: 118 KYTEMDYARAGNKATFTVNLDPGPLEQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCK 177
Query: 167 EGKPLSPESARILRLLGIKMATFKLHLICRWSAEDFELYREGLD 210
EG L+PE AR+L+L G +MA FK+ + W A+ + G D
Sbjct: 178 EGDVLTPEQARVLKLFGYEMAEFKVSIKYMWDAQSGRFQQMGDD 221
>sp|Q9D0I8|MRT4_MOUSE mRNA turnover protein 4 homolog OS=Mus musculus GN=Mrto4 PE=2 SV=1
Length = 239
Score = 185 bits (470), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/214 (48%), Positives = 132/214 (61%), Gaps = 17/214 (7%)
Query: 1 MPKSKRDRPVTLSKTKKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
MPKSKRD+ V+L+KT KKG E K+ ++ +R V+ YK +++FS NMRN K K+ R
Sbjct: 1 MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60
Query: 61 KPSRLLW---------VGRYPMRYSQAYK-----VSKFLCGNTGLFLTNMPKEEVESLFN 106
K SR+ + +GR P S YK VSK L G GL TN KEEV F
Sbjct: 61 KHSRMFFGKNKVMMVALGRSP---SDEYKDNLHQVSKKLRGEVGLLFTNRTKEEVNEWFT 117
Query: 107 KYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCE 166
KY + DFAR G+ AT V L GPL+QF H MEP LR+ G+P L KGVV L+SD+ VC+
Sbjct: 118 KYTEMDFARAGNKATLTVSLDPGPLKQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCK 177
Query: 167 EGKPLSPESARILRLLGIKMATFKLHLICRWSAE 200
EG L+PE ARIL+L G +MA FK+ + W A+
Sbjct: 178 EGDVLTPEQARILKLFGYEMAEFKVIIKYMWDAQ 211
>sp|Q9UKD2|MRT4_HUMAN mRNA turnover protein 4 homolog OS=Homo sapiens GN=MRTO4 PE=1 SV=2
Length = 239
Score = 182 bits (463), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 101/224 (45%), Positives = 134/224 (59%), Gaps = 17/224 (7%)
Query: 1 MPKSKRDRPVTLSKTKKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
MPKSKRD+ V+L+KT KKG E K+ ++ +R V+ YK +++FS NMRN K K+ R
Sbjct: 1 MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60
Query: 61 KPSRLLW---------VGRYPMRYSQAYK-----VSKFLCGNTGLFLTNMPKEEVESLFN 106
K SR+ + +GR P S YK VSK L G GL TN KEEV F
Sbjct: 61 KHSRMFFGKNKVMMVALGRSP---SDEYKDNLHQVSKRLRGEVGLLFTNRTKEEVNEWFT 117
Query: 107 KYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCE 166
KY + D+AR G+ A V L GPLEQF H MEP LR+ G+P L +GVV L+SD+ VC+
Sbjct: 118 KYTEMDYARAGNKAAFTVSLDPGPLEQFPHSMEPQLRQLGLPTALKRGVVTLLSDYEVCK 177
Query: 167 EGKPLSPESARILRLLGIKMATFKLHLICRWSAEDFELYREGLD 210
EG L+PE AR+L+L G +MA FK+ + W ++ + G D
Sbjct: 178 EGDVLTPEQARVLKLFGYEMAEFKVTIKYMWDSQSGRFQQMGDD 221
>sp|Q86HD3|MRT4_DICDI mRNA turnover protein 4 homolog OS=Dictyostelium discoideum GN=mrt4
PE=3 SV=1
Length = 223
Score = 142 bits (358), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 123/218 (56%), Gaps = 11/218 (5%)
Query: 1 MPKSKRDRPVTLSKTKKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
M KSKR+ V ++K K E K+ +V++I++ V+ YK IY+F+FENMRN K K R +
Sbjct: 1 MVKSKRNVVVNMTKVTKNPGEKKKKLVSTIKDIVDQYKFIYLFTFENMRNNKLKSVRTEW 60
Query: 61 KPSRLLWVGRYPMRYS-----------QAYKVSKFLCGNTGLFLTNMPKEEVESLFNKYE 109
S+ L+ + +K+++ L G GLF TN PK++V F Y
Sbjct: 61 STSKFLFGKNKVLSVGLGKSEEDELKPNLHKLTEHLEGECGLFFTNEPKDKVFEYFTNYS 120
Query: 110 DYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGK 169
+ DF R+G + E + + EGP+ TH ME +LR G+P L GV+ + ++ +CE G
Sbjct: 121 EKDFPRSGFVSEETITIKEGPIVGMTHSMETYLRGLGLPTTLKNGVIFVDREYTLCEAGV 180
Query: 170 PLSPESARILRLLGIKMATFKLHLICRWSAEDFELYRE 207
++PE +++L+L +++ FK H+ W+ ++F L E
Sbjct: 181 AVTPEQSQLLKLFNHEISEFKFHIKGFWNEDEFTLCEE 218
>sp|Q7S302|MRT4_NEUCR mRNA turnover protein 4 homolog OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=NCU07547 PE=3 SV=1
Length = 252
Score = 139 bits (350), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 121/233 (51%), Gaps = 29/233 (12%)
Query: 1 MPKSKRDRPVTLSKTKKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
MPKSKR + L++ KK +E KE + +IR + NY+ +VFS +NMRN K+ R+++
Sbjct: 1 MPKSKRAKVYNLTQVTKKNREQKEKLFENIRECIPNYQHCFVFSIDNMRNNYLKDVRKEL 60
Query: 61 KPSRLLW---------VGRYP--MRYSQAYKVSKFLCGNTGLFLTNMPKEEVESLFNKYE 109
R+ + +G P + K+SK+L G+ GL TN E++ F
Sbjct: 61 NDCRIFFGKTKLTARALGTTPEDAQADGLDKLSKYLSGSVGLIFTNRDPSEIKDYFVNLT 120
Query: 110 DYDFARTGSTATEKVELPEGPLEQ------------FTHEMEPFLRKQGMPVRLNKGVVE 157
DFAR GS AT + +P GPL +H +EP LR+ GMP R+ KG V
Sbjct: 121 QVDFARAGSVATRTITIPSGPLYSTGGEVPAEHDVPVSHTLEPELRRLGMPTRMVKGKVC 180
Query: 158 L------VSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLICRWSAEDFEL 204
L D+V+C+EG+ L R+L+L I ++ F++ L+ WSA E+
Sbjct: 181 LGDEAGEGDDYVICKEGETLDSRQTRLLKLFSICLSEFRVKLLAYWSAASGEV 233
>sp|Q9USZ6|MRT4_SCHPO mRNA turnover protein 4 homolog OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC11G11.03 PE=3 SV=1
Length = 241
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 114/221 (51%), Gaps = 23/221 (10%)
Query: 1 MPKSKRDRPVTLSKTKKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
MPKS+R + +TL++T+KKG E K + + ++ +++++ +++F NMRN K R+
Sbjct: 1 MPKSRRSKVLTLAQTEKKGHEGKAALFSGVQQSLDSFDYMWIFDVTNMRNTYLKRIRDDW 60
Query: 61 KPSRLLW---------VGRYPM--RYSQAYKVSKFLCGNTGLFLTNMPKEEVESLFNKYE 109
K SR+ +G P K++K L G GL TN +EV F +
Sbjct: 61 KGSRIFMGKTKVMAKALGHTPEEEHAENVSKLTKLLHGAVGLLFTNSKPDEVIGYFESFV 120
Query: 110 DYDFARTGSTATEKVELPEGPLEQ------------FTHEMEPFLRKQGMPVRLNKGVVE 157
DFAR G+ A +P GP+ TH +EP +R+ GMP L GVV
Sbjct: 121 QNDFARAGAVAPFTHVIPAGPVYSRAGQIPVEDDILLTHTLEPQVRQLGMPTVLKNGVVT 180
Query: 158 LVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLICRWS 198
L++DF +C EG+ L R+L+L GI A FK+ L+ +S
Sbjct: 181 LLADFPLCTEGQQLDSRQTRLLKLFGITAAEFKVGLLGYYS 221
>sp|Q6FJ04|MRT4_CANGA mRNA turnover protein 4 homolog OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=MRT4 PE=3 SV=1
Length = 239
Score = 116 bits (291), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 118/224 (52%), Gaps = 24/224 (10%)
Query: 1 MPKSKRDRPVTLSKTKKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
MP+SKR + VTL++T KKG+E+KE I + +R A++ YK ++V +++R +E RE
Sbjct: 1 MPRSKRSKLVTLAQTDKKGRENKERIFDEVREALDTYKYVFVLQLDDVRTPVLQEIREAW 60
Query: 61 KPSRLLWVGRYPMRYS------QAY-----KVSKFLCGNTGLFLTNMPKEEVESLFNKYE 109
S+LL R + + Q Y K++K+ G GL TN + V+ F Y
Sbjct: 61 VGSKLLMGKRKVLEKALGTTREQEYKENLSKLTKYCSGVIGLLFTNETLDTVKEYFEAYS 120
Query: 110 DYDFARTGSTATEKVELPEG---------PLEQ---FTHEMEPFLR-KQGMPVRLNKGVV 156
D++R S A E+PEG P+E+ H +EP LR K MP ++ G +
Sbjct: 121 RLDYSRPNSRAPITFEVPEGIVYSRGGQIPIEEDVPMAHSLEPTLRNKYEMPTKIKAGKI 180
Query: 157 ELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLICRWSAE 200
L + ++VC+EG+ L A IL+ G+ +A FK+ + + E
Sbjct: 181 TLEAPYLVCKEGQKLDVRQALILKQFGVALAQFKVIISAYYDNE 224
>sp|Q75DK9|MRT4_ASHGO mRNA turnover protein 4 homolog OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=MRT4
PE=3 SV=1
Length = 236
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 113/228 (49%), Gaps = 32/228 (14%)
Query: 1 MPKSKRDRPVTLSKTKKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
MP+SKR + VTL++T+KKG+E+KE I + +R A++ Y+ ++V E++R +E R
Sbjct: 1 MPRSKRSKLVTLAQTEKKGRENKERIFDEVRQALDTYRYVWVLRLEDVRTPVLQEIRSAW 60
Query: 61 KPSRLLWVGR---------------YPMRYSQAYKVSKFLCGNTGLFLTNMPKEEVESLF 105
S+L+ +GR Y S K + +C GL T+ E V + F
Sbjct: 61 AGSKLI-MGRRKVLEKALGGTRETEYKENVSGLVKQCEGMC---GLLFTDETPETVTAYF 116
Query: 106 NKYEDYDFARTGSTATEKVELPEG---------PLEQ---FTHEMEPFLRKQ-GMPVRLN 152
+Y D++R S A +VE+P G P E H +EP LR + MP R+
Sbjct: 117 REYRKADYSRAKSRAPLRVEIPAGVVYSRGGQVPAEDDVPMVHSLEPTLRNKFKMPTRIQ 176
Query: 153 KGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLICRWSAE 200
G + L ++VCE G+ L A IL+ G+ A F++ L + E
Sbjct: 177 NGKITLEQPYLVCEAGETLDVRQALILKQFGVAAAEFRVKLAAYYDGE 224
>sp|P33201|MRT4_YEAST mRNA turnover protein 4 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=MRT4 PE=1 SV=1
Length = 236
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 110/217 (50%), Gaps = 24/217 (11%)
Query: 1 MPKSKRDRPVTLSKTKKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQI 60
MP+SKR + VTL++T KKG+E+KE I + +R A++ Y+ ++V +++R +E R
Sbjct: 1 MPRSKRSKLVTLAQTDKKGRENKERIFDEVREALDTYRYVWVLHLDDVRTPVLQEIRTSW 60
Query: 61 KPSRLLWVGRYPMRYS-----------QAYKVSKFLCGNTGLFLTNMPKEEVESLFNKYE 109
S+L+ R ++ + Y++SK G TGL T+ V+ F Y
Sbjct: 61 AGSKLIMGKRKVLQKALGEKREEEYKENLYQLSKLCSGVTGLLFTDEDVNTVKEYFKSYV 120
Query: 110 DYDFARTGSTATEKVELPEG---------PLEQ---FTHEMEPFLRKQ-GMPVRLNKGVV 156
D++R + A +PEG P E+ H +EP +R + +P ++ G +
Sbjct: 121 RSDYSRPNTKAPLTFTIPEGIVYSRGGQIPAEEDVPMIHSLEPTMRNKFEIPTKIKAGKI 180
Query: 157 ELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHL 193
+ S ++VC EG+ L A IL+ GI + FK+ +
Sbjct: 181 TIDSPYLVCTEGEKLDVRQALILKQFGIAASEFKVKV 217
>sp|P05317|RLA0_YEAST 60S acidic ribosomal protein P0 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPP0 PE=1 SV=2
Length = 312
Score = 60.5 bits (145), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 19/179 (10%)
Query: 30 IRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPM--RYSQAY-------- 79
+R +E YKS++V +N+ + + E R++++ ++ +G+ M R + +
Sbjct: 15 LREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSDLPDFE 74
Query: 80 KVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEME 139
K+ F+ GN G TN P E++++ AR G+ A E + + ME
Sbjct: 75 KLLPFVKGNVGFVFTNEPLTEIKNVIVSNRVAAPARAGAVAPEDIWV-----RAVNTGME 129
Query: 140 P----FLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLI 194
P F + G+P ++ +G +E+VSD V + G + A +L LL I TF L ++
Sbjct: 130 PGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGNKVGQSEASLLNLLNISPFTFGLTVV 188
>sp|Q9C3Z6|RLA0_PODAS 60S acidic ribosomal protein P0 OS=Podospora anserina PE=3 SV=1
Length = 314
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 84/180 (46%), Gaps = 19/180 (10%)
Query: 28 NSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPM--RYSQAYKVSK-- 83
+ ++ +E YKSI++ S +N+ + + E R+ ++ ++ +G+ M R + + V
Sbjct: 13 DKLKGLLEEYKSIFIVSVDNVSSQQMHEIRQALRDQGVVLMGKNTMVRRALKTFLVDSPE 72
Query: 84 ------FLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHE 137
F+ GN G TN +E+ + AR G+ A V +P G
Sbjct: 73 YERLLPFVKGNVGFVFTNGDLKEIRDKILANKVAAPARAGAVAPVDVWIPAG-----NTG 127
Query: 138 MEP----FLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHL 193
MEP F + G+P ++ +G +E+ +D + E G + P A +L +L I T+ + +
Sbjct: 128 MEPGKTSFFQALGVPTKIARGTIEITTDLKLVEAGAKVGPSEATLLNMLNISPFTYGMGI 187
>sp|Q96TJ5|RLA0_NEUCR 60S acidic ribosomal protein P0 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=crpp0 PE=2 SV=1
Length = 313
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 86/180 (47%), Gaps = 19/180 (10%)
Query: 28 NSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPM--RYSQAY------ 79
+ ++ +E+Y+SI++ S +N+ + + E R+ ++ ++ +G+ M R + +
Sbjct: 13 DKLKGLLEDYRSIFIVSVDNVSSQQMHEIRQSLRGEAVVLMGKNTMVRRALKTFVADTPE 72
Query: 80 --KVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHE 137
++ F+ GN G TN +EV + AR G+ A V +P G
Sbjct: 73 YERLLPFVKGNVGFVFTNGDLKEVRDKILANKVAAPARAGAIAPADVWIPAG-----NTG 127
Query: 138 MEP----FLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHL 193
MEP F + G+P ++ +G +E+ +D + E G + P A +L +L I T+ + +
Sbjct: 128 MEPGKTSFFQALGVPTKIARGTIEITTDLKLVEAGAKVGPSEATLLNMLNISPFTYGMGI 187
>sp|B6YSX9|RLA0_THEON Acidic ribosomal protein P0 homolog OS=Thermococcus onnurineus
(strain NA1) GN=rplP0 PE=3 SV=1
Length = 339
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 84/191 (43%), Gaps = 14/191 (7%)
Query: 27 VNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPM------RYSQAY- 79
V + N +++Y I + N+ + RE+++ LL V R + R +Q
Sbjct: 12 VEELTNIIKSYPVIALVDVANVPAYPLSKMREKLRGKALLRVSRNTLIELAIKRAAQELG 71
Query: 80 -----KVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQF 134
K+ + G G+ T M ++ L + + A+ G V +P GP
Sbjct: 72 KPELEKLIDHIQGGAGILATEMNPFKLYKLLEESKTPAPAKPGVPVPRDVVIPAGPTSIS 131
Query: 135 THEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLI 194
+ ++ G+P R+ KG V + D+ V + G+ ++ + ARIL LGI+ L+L+
Sbjct: 132 PGPLVGEMQALGIPARIEKGKVSIQKDYTVLKAGEVITEQLARILNALGIEPLEVGLNLL 191
Query: 195 CRWSAEDFELY 205
+ ED +Y
Sbjct: 192 AAY--EDGIVY 200
>sp|Q8TZJ8|RLA0_PYRFU Acidic ribosomal protein P0 homolog OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rplP0 PE=1
SV=1
Length = 339
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 88/203 (43%), Gaps = 18/203 (8%)
Query: 27 VNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSR-LLWVGRYPMRYSQAYKVSK-- 83
V + N +++Y + + +M + R I+ + LL V R + KV++
Sbjct: 12 VEELANLIKSYPVVALVDVSSMPAYPLSQMRRLIRENNGLLRVSRNTLIELAIKKVAQEL 71
Query: 84 ----------FLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQ 133
++ G G+ +T M ++ + A+ G+ + V +P GP
Sbjct: 72 GKPELEKLINYIEGGAGILVTTMNPFKLYKFLQQNRQPAPAKPGAKVPKDVVIPAGPTSL 131
Query: 134 FTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHL 193
+ ++ G+P R+ +G V + D VV + G+ ++PE A IL LGI+ L L
Sbjct: 132 APGPIVGQMQAMGIPARIERGKVTIQKDTVVLKAGEEITPELANILNALGIQPLEVGLDL 191
Query: 194 ICRWSAEDFELYRE---GLDESD 213
+ + ED +Y +DES+
Sbjct: 192 LAVY--EDGIIYTPDVLAIDESE 212
>sp|Q5JH36|RLA0_PYRKO Acidic ribosomal protein P0 homolog OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=rplP0 PE=3
SV=1
Length = 340
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 89/202 (44%), Gaps = 17/202 (8%)
Query: 27 VNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPM------RYSQAY- 79
V + N +++Y I + + + R++++ LL V R + R +Q
Sbjct: 12 VEELANIIKSYPVIALVDVAGVPAYPLSKMRDKLRGKALLRVSRNTLIELAIKRAAQELG 71
Query: 80 -----KVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQF 134
K+ + G + T M ++ L + + A+ G+ + V +P GP
Sbjct: 72 QPELEKLIDHIQGGAAILATEMNPFKLYKLLEESKTPAPAKAGAVVPKDVVIPAGPTSLA 131
Query: 135 THEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLI 194
+ ++ G+P R+ KG V + D+ V + G+ ++ + ARIL LGI+ L+L+
Sbjct: 132 PGPLVGEMQALGIPARIEKGKVSIQKDYTVLKAGEVITEQLARILNALGIEPLEVGLNLL 191
Query: 195 CRWSAEDFELYRE---GLDESD 213
+ ED +Y +DES+
Sbjct: 192 AAY--EDGIVYTPDVLAIDESE 211
>sp|O74864|RLA0_SCHPO 60S acidic ribosomal protein P0 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rpp0 PE=3 SV=1
Length = 312
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 82/192 (42%), Gaps = 19/192 (9%)
Query: 20 KEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPM------ 73
KE K +R+ E Y S++V + +N+ + + R+Q++ + L +G+ M
Sbjct: 5 KESKAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMR 64
Query: 74 ----RYSQAYKVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEG 129
+ ++ + GN G TN +EV AR + A V +P G
Sbjct: 65 GIINDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAG 124
Query: 130 PLEQFTHEMEP----FLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIK 185
MEP F + G+P ++ +G +E+ SD + + + P A +L +L I
Sbjct: 125 -----NTGMEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNIS 179
Query: 186 MATFKLHLICRW 197
T+ + ++ +
Sbjct: 180 PFTYGMDVLTIY 191
>sp|Q8ZTT3|RLA0_PYRAE Acidic ribosomal protein P0 homolog OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rplP0 PE=3 SV=1
Length = 345
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/186 (20%), Positives = 87/186 (46%), Gaps = 9/186 (4%)
Query: 26 IVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGR---YPMRYSQAY--- 79
IV+ ++ Y +++F + + E+R +++ ++ + + + + +++ Y
Sbjct: 23 IVSEATELLQKYPYVFLFDLHGLSSRILHEYRYRLRRYGVIKIIKPTLFKIAFTKVYGGI 82
Query: 80 --KVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHE 137
++++ + G G F T+ EV + + A+ G A + +P GP
Sbjct: 83 PAEIAEKVRGEVGFFFTSFNPAEVIKIVAENSVRRAAQPGDKAPFDIVVPAGPTNASPGP 142
Query: 138 MEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLI-CR 196
+ K +P R+ +G + + D VV + G+ ++PE A +LR++GI+ +L L+
Sbjct: 143 IISKFGKLKIPTRVQEGKIWIAKDTVVAKAGQEITPEMAEVLRVVGIEPIFEQLRLLGVI 202
Query: 197 WSAEDF 202
W + F
Sbjct: 203 WRGQRF 208
>sp|P50346|RLA0_SOYBN 60S acidic ribosomal protein P0 OS=Glycine max PE=2 SV=1
Length = 320
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 87/194 (44%), Gaps = 14/194 (7%)
Query: 17 KKGKEHKEVIVNS-IRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPM-- 73
K+ K K++ ++ + + +E Y I V + +N+ + + + R+ ++ ++ +G+ M
Sbjct: 4 KQTKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMMK 63
Query: 74 ---------RYSQAY-KVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEK 123
+ AY + L GN GL T +EV KY+ AR G A
Sbjct: 64 RSVRMHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPID 123
Query: 124 VELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLG 183
V +P G F + +P ++NKG VE+++ + +G + A +L LG
Sbjct: 124 VVVPPGN-TGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLG 182
Query: 184 IKMATFKLHLICRW 197
I+ ++ L ++ +
Sbjct: 183 IRPFSYGLVVLSVY 196
>sp|C5A428|RLA0_THEGJ Acidic ribosomal protein P0 homolog OS=Thermococcus gammatolerans
(strain DSM 15229 / JCM 11827 / EJ3) GN=rplP0 PE=3 SV=1
Length = 340
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 85/191 (44%), Gaps = 14/191 (7%)
Query: 27 VNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPM------RYSQAY- 79
V + ++++ I + + + R++++ LL V R + R +Q
Sbjct: 12 VEELTKIIKSHPVIALVDVAGVPAYPLSKMRDKLRGKALLRVSRNTLIELAIKRAAQELN 71
Query: 80 -----KVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQF 134
K++ ++ G + T M ++ L + + A+ G+ + V +P GP
Sbjct: 72 KPDLEKLADYIEGGAAILATEMNPFKLYKLLEESKTPAPAKPGAVVPKDVVIPAGPTSLA 131
Query: 135 THEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLI 194
+ ++ G+P R+ KG V + D+ V + G+ ++ + ARIL LGI+ L+L+
Sbjct: 132 PGPLVGEMQALGIPARIEKGKVTIQKDYTVLKAGEVITEQLARILNALGIEPLEVGLNLL 191
Query: 195 CRWSAEDFELY 205
+ ED +Y
Sbjct: 192 AAY--EDDIIY 200
>sp|Q9UXS5|RLA0_PYRAB Acidic ribosomal protein P0 homolog OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=rplP0 PE=3 SV=1
Length = 341
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 85/192 (44%), Gaps = 15/192 (7%)
Query: 27 VNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSR-LLWVGRYPM------RYSQAY 79
V + N +++Y I + +M + R I+ + LL V R + + +Q
Sbjct: 12 VEELANLIKSYPVIALVDVSSMPAYPLSQMRRLIRENGGLLRVSRNTLIELAIKKAAQEL 71
Query: 80 ------KVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQ 133
K+++++ G+ +TNM ++ + A+ G+ + V +P GP
Sbjct: 72 GKPELEKLAEYIDRGAGILVTNMNPFKLYKFLQQNRQPAPAKPGAVVPKDVVIPAGPTPL 131
Query: 134 FTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHL 193
+ ++ G+P R+ +G V + D V + G+ ++PE A IL LGI+ L +
Sbjct: 132 APGPIVGQMQAMGIPARIERGKVTIQKDTTVLKAGEVITPELANILNALGIQPLEVGLDV 191
Query: 194 ICRWSAEDFELY 205
+ + ED +Y
Sbjct: 192 LAVY--EDGIVY 201
>sp|P26796|RLA0_TRYCR 60S acidic ribosomal protein P0 OS=Trypanosoma cruzi PE=2 SV=2
Length = 323
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 9/119 (7%)
Query: 83 KFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEP-- 140
K LCGNT L TN + ++ +K+ AR G+ A V +P G MEP
Sbjct: 87 KLLCGNTALIFTNEEIPVITAVLDKHRVQAPARVGAIAPCDVIVPAG-----NTGMEPKA 141
Query: 141 --FLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLICRW 197
F + + ++ KG VE+VSD V G + +A +L+ L I +++ + W
Sbjct: 142 TSFFQALNIATKIAKGTVEIVSDKKVLSVGDRVDNSTATLLQKLDISPFYYQVEVQSVW 200
>sp|Q8SRJ7|RLA0_ENCCU 60S acidic ribosomal protein P0 OS=Encephalitozoon cuniculi (strain
GB-M1) GN=RPP0 PE=1 SV=1
Length = 290
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 90/213 (42%), Gaps = 17/213 (7%)
Query: 5 KRDRPVTLSKTKKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSR 64
KR++ T+K KE KE+ R E Y + EN+ + + K+ + Q +
Sbjct: 16 KREKFFHPGMTRKDAKERKELTYERARKLFETYSRFALVKIENVVSTQLKDIKRQWGGNA 75
Query: 65 LLWVGR-YPMRYSQA-------YKVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFART 116
L +G+ +R + A V + G+ +++ ++ A+
Sbjct: 76 ELLMGKNSAIRRAIADLGKPELSGVYDLVKGDVCFVFFKGNARDIKKAIDENVREACAKV 135
Query: 117 GSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESA 176
G+ A V + E + T + + + G+ ++ KG VE++S + V EG + P A
Sbjct: 136 GNVAQRDVWV-ESCITGMTPDKTSYFQALGIATKITKGKVEIISPYKVLSEGDKVGPSQA 194
Query: 177 RILRLLGIKMATFKLHLICRWSAEDFELYREGL 209
+L +L IK +K+ + ++Y +G+
Sbjct: 195 NLLGMLNIKPFCYKMTM--------HQIYEDGV 219
>sp|O74109|RLA0_PYRHO Acidic ribosomal protein P0 homolog OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=rplP0 PE=1 SV=1
Length = 342
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 2/126 (1%)
Query: 80 KVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEME 139
K+ +++ G+ +TNM ++ + A+ G+ + V +P GP +
Sbjct: 78 KLVEYIDRGAGILVTNMNPFKLYKFLQQNRQPAPAKPGAVVPKDVVVPAGPTPLAPGPIV 137
Query: 140 PFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLICRWSA 199
++ G+P R+ KG V + D V + G+ ++PE A IL LGI+ L ++ +
Sbjct: 138 GQMQALGIPARIEKGKVTIQKDTTVLKAGEVITPELANILNALGIQPLEVGLDVLAVY-- 195
Query: 200 EDFELY 205
ED +Y
Sbjct: 196 EDGIVY 201
>sp|P50345|RLA0_LUPLU 60S acidic ribosomal protein P0 OS=Lupinus luteus PE=2 SV=1
Length = 322
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 86/194 (44%), Gaps = 14/194 (7%)
Query: 17 KKGKEHKEVIVNS-IRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPM-- 73
K K K+++ + + ++ Y I V + +N+ + + + R+ ++ ++ +G+ M
Sbjct: 4 KATKAEKKIVYDGKLCQLLDEYTQILVVNADNVGSKQLQNIRQGLRGDSVVLMGKNTMMK 63
Query: 74 ---------RYSQAY-KVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEK 123
+QA+ + L GN GL T +EV KY+ A G A
Sbjct: 64 RSVRIHAEKTGNQAFLNLIPLLIGNVGLIFTKGYLKEVSEEVAKYKVGAPACVGLVAPID 123
Query: 124 VELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLG 183
V +P G F + +P ++NKG VE+++ + ++G + A +L LG
Sbjct: 124 VVVPPGN-TGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLG 182
Query: 184 IKMATFKLHLICRW 197
I+ ++ L ++ +
Sbjct: 183 IRPFSYGLVVLSVY 196
>sp|P39097|RLA0_LEIIN 60S acidic ribosomal protein P0 OS=Leishmania infantum GN=LIPO-A
PE=3 SV=1
Length = 323
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 9/118 (7%)
Query: 84 FLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEP--- 140
L GNTGL TN +E+ S+ + + AR G+ + V + G + MEP
Sbjct: 88 LLSGNTGLIFTNNAVQEITSVLDAHRVKRAARVGAISPCDVIVAAG-----STGMEPTQT 142
Query: 141 -FLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLICRW 197
F + + ++ KG+VE+V++ V G + +A +L+ L I ++++++ W
Sbjct: 143 SFFQALNIATKIAKGMVEIVTEKKVLSVGDKVDNSTATLLQKLNISPFYYQVNVLSVW 200
>sp|O04204|RLA01_ARATH 60S acidic ribosomal protein P0-1 OS=Arabidopsis thaliana GN=RPP0A
PE=1 SV=1
Length = 317
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 83/188 (44%), Gaps = 14/188 (7%)
Query: 17 KKGKEHKEVIVNS-IRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPM-- 73
K K K+++ +S + + Y I V + +N+ + + + R+ ++ ++ +G+ M
Sbjct: 4 KATKAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMK 63
Query: 74 ---------RYSQAY-KVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEK 123
+QA+ + L GN GL T +EV KY+ AR G A
Sbjct: 64 RSVRIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPID 123
Query: 124 VELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLG 183
V + G F + +P ++NKG VE+++ + ++G + A +L LG
Sbjct: 124 VVVQPGN-TGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLG 182
Query: 184 IKMATFKL 191
I+ ++ L
Sbjct: 183 IRPFSYGL 190
>sp|P39096|RLA0_LEICH 60S acidic ribosomal protein P0 OS=Leishmania chagasi GN=LCP0 PE=3
SV=1
Length = 322
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 88/201 (43%), Gaps = 33/201 (16%)
Query: 20 KEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPMRY---- 75
+E++E +V+ + Y + +N+R+ + + R + +G+ ++
Sbjct: 9 REYEERLVDCLTK----YSCVLFVGMDNVRSQQVHDVRRGCRGKAEFIMGKKTLQAKIVE 64
Query: 76 --SQAYKVS-------------KFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTA 120
+QA S L GNTGL TN +E+ S+ + + AR G+
Sbjct: 65 KRAQAKDASPEAKPFNDQCEEYNLLSGNTGLIFTNNAVQEITSVLDGHRVKAPARVGAIP 124
Query: 121 TEKVELPEGPLEQFTHEMEP----FLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESA 176
+ V +P G + MEP F + + ++ KG+VE+V++ V G + +A
Sbjct: 125 CDVV-VPAG-----STGMEPTQTSFFQALNIATKIAKGMVEIVTEKKVLSVGDKVDNSTA 178
Query: 177 RILRLLGIKMATFKLHLICRW 197
+L+ L I ++++++ W
Sbjct: 179 TLLQKLNISPFYYQVNVLSVW 199
>sp|P15825|RLA0_HALMA 50S ribosomal protein L10E OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rplP0 PE=1
SV=2
Length = 348
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 86/189 (45%), Gaps = 25/189 (13%)
Query: 21 EHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPMRYSQAYK 80
E K+ V++I +E+Y+S+ V + + + + ++ R + + L V R +
Sbjct: 14 EWKQEEVDAIVEMIESYESVGVVNIAGIPSRQLQDMRRDLHGTAELRVSRNTLLERALDD 73
Query: 81 VSK-------FLCGNTGLFLTNMPKEEVESLFNKYEDYDFART------GSTATEKVELP 127
V ++ G GL T+ ++ F+ +++ + ++T G A + +P
Sbjct: 74 VDDGLEDLNGYITGQVGLIGTD------DNPFSLFQELEASKTPAPIGAGEVAPNDIVIP 127
Query: 128 EGPLEQFTHEMEPF---LRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGI 184
EG + PF L+ G R+ +G ++++SD V + G+ +S E + +L LGI
Sbjct: 128 EG---DTGVDPGPFVGELQSVGADARIQEGSIQVLSDSTVLDTGEEVSQELSNVLNELGI 184
Query: 185 KMATFKLHL 193
+ L L
Sbjct: 185 EPKEVGLDL 193
>sp|Q971J2|RLA0_SULTO Acidic ribosomal protein P0 homolog OS=Sulfolobus tokodaii (strain
DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rplP0 PE=3
SV=2
Length = 334
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 51/114 (44%)
Query: 80 KVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEME 139
K+ +L G TN E++ +K++ +A G A E+V +P G
Sbjct: 78 KLEPYLTGPNAFIFTNKNPFEIQLFLSKFKLKRYAMPGDKADEEVVIPAGDTGMPAGPAL 137
Query: 140 PFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHL 193
K + ++ G + + D V+ + G P+ P++ IL+ LGI KL++
Sbjct: 138 SIFGKLKIKTKVQDGKIHVTQDTVIAKPGDPIPPDAIPILQKLGIMPVHIKLNI 191
>sp|P57691|RLA03_ARATH 60S acidic ribosomal protein P0-3 OS=Arabidopsis thaliana GN=RPP0C
PE=1 SV=1
Length = 323
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 72/170 (42%), Gaps = 13/170 (7%)
Query: 34 VENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPMR------------YSQAYKV 81
++ Y I V + +N+ + + + R+ ++ ++ +G+ M + +
Sbjct: 21 IDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENSGNTAILNL 80
Query: 82 SKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPF 141
L GN GL T +EV KY+ AR G A V + G F
Sbjct: 81 LPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGN-TGLDPSQTSF 139
Query: 142 LRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKL 191
+ +P ++NKG VE+++ + ++G + A +L LGI+ ++ L
Sbjct: 140 FQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGL 189
>sp|Q42112|RLA02_ARATH 60S acidic ribosomal protein P0-2 OS=Arabidopsis thaliana GN=RPP0B
PE=1 SV=2
Length = 320
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 72/170 (42%), Gaps = 13/170 (7%)
Query: 34 VENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPMR------------YSQAYKV 81
++ Y I V + +N+ + + + R+ ++ ++ +G+ M + +
Sbjct: 21 IDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENTGNTAILNL 80
Query: 82 SKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPF 141
L GN GL T +EV KY+ AR G A V + G F
Sbjct: 81 LPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGN-TGLDPSQTSF 139
Query: 142 LRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKL 191
+ +P ++NKG VE+++ + ++G + A +L LGI+ ++ L
Sbjct: 140 FQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGL 189
>sp|Q6L1X8|RLA0_PICTO Acidic ribosomal protein P0 homolog OS=Picrophilus torridus (strain
ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)
GN=rplP0 PE=3 SV=1
Length = 315
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 81/187 (43%), Gaps = 24/187 (12%)
Query: 27 VNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKP--------SRLLWVGRYPMRYSQA 78
V ++ N + + K + S + +RN +F++ R I+ +RLL + +
Sbjct: 12 VKNLENEINSRKVAAIVSIKGLRNNEFQKIRNSIRDKARIKVSRARLLRLAIENTGKNNI 71
Query: 79 YKVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVEL-------PEGP- 130
K+ + G L T+ +++ + K + A+ G A E + + P GP
Sbjct: 72 VKLKDYAHGQVALITTDESPKKIYDILEKSKTKAPAKGGEIAEEDIVIEPKETNFPPGPK 131
Query: 131 LEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFK 190
+ +F +K G+P + KG + + S+ ++G ++ E A +L+ L I T
Sbjct: 132 ISEF--------QKAGLPAAIEKGKIVIKSEVTFVKKGDVITREKALVLKDLEIYPITAG 183
Query: 191 LHLICRW 197
L LI +
Sbjct: 184 LDLIAAY 190
>sp|A3DNI2|RLA0_STAMF Acidic ribosomal protein P0 homolog OS=Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1) GN=rplP0 PE=3 SV=1
Length = 338
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 53/114 (46%)
Query: 80 KVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEME 139
K + L G L T+M E+ L +KY+ + + G A +++ +PEG +
Sbjct: 80 KFEELLTGQNLLLFTHMNAFELSLLLDKYKAKTYYKPGEIAQQEIVIPEGNTGLSPGPIL 139
Query: 140 PFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHL 193
K +P R+ + + D VV + G +S E A +L+ L I + K+++
Sbjct: 140 STFSKLKIPTRIQGNSIVITRDTVVAKPGDTISEELASLLQRLDIALKEVKINI 193
>sp|A9A838|RLA0_METM6 Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=rplP0 PE=3 SV=1
Length = 335
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 90/200 (45%), Gaps = 28/200 (14%)
Query: 27 VNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPMR------------ 74
VN+++ +++ I + + ++ +E R++I+ L + R +
Sbjct: 18 VNALKELLKSTSIIALIDMMEVPAVQLQEIRDKIRDQMTLKMSRNTLMKRAIEEVAEETG 77
Query: 75 YSQAYKVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVE-------LP 127
+ K++ +L + T M ++ ++ + + G+TA +E +P
Sbjct: 78 NPEFAKLADYLDKGAAIIATEMNPFKLFKTLDESKSPAPVKGGATAPCDIEVKAGSTGMP 137
Query: 128 EGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMA 187
GP F E L+ G+P ++KG + + D VV +EG+ +S + A +L LGIK
Sbjct: 138 PGP---FLSE----LKAVGIPAAIDKGKIGIKEDKVVIKEGEVVSQKLAVVLSALGIKPV 190
Query: 188 TFKLHLICRWSAEDFELYRE 207
T L+++ + ED +Y E
Sbjct: 191 TVGLNVLGVY--EDGVIYTE 208
>sp|P15826|RLA0_METVS Acidic ribosomal protein P0 homolog OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rplP0 PE=1 SV=2
Length = 336
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 20/95 (21%)
Query: 115 RTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPE 174
++GST +P GP F E L+ G+P ++KG + + D VV +EG +SP+
Sbjct: 130 KSGSTG-----MPPGP---FLSE----LKAVGIPAAIDKGKIGIKEDKVVAKEGDVISPK 177
Query: 175 SARILRLLGIKMATFKLHLICRWSAEDFELYREGL 209
A +L LGIK T L+++ +Y EG+
Sbjct: 178 LAVVLSALGIKPVTVGLNVLG--------VYEEGV 204
>sp|Q8TX50|RLA0_METKA Acidic ribosomal protein P0 homolog OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=rplP0 PE=3 SV=2
Length = 357
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/180 (19%), Positives = 83/180 (46%), Gaps = 11/180 (6%)
Query: 27 VNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKP-SRLLWVGRYP-MRYSQAYKVSK- 83
V ++ ++ Y+++ + E + + +E R +++ ++ + R MR + K+ +
Sbjct: 25 VKELKELMDEYENVGLVDLEGIPAPQLQEIRAKLRERDTIIRMSRNTLMRIALEEKLDER 84
Query: 84 --------FLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFT 135
++ G TN+ ++ L + + A+ G A E + +PEGP
Sbjct: 85 PELEPLLDYIEGPVAFIFTNLDPFKLYKLLEESKASAPAKPGDIAPEDIVVPEGPTPFEP 144
Query: 136 HEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLIC 195
+ L++ G+P ++ G V + D V+ +EG+ + ++A IL+ L I+ + ++
Sbjct: 145 GPIVSELQQAGLPAQIQDGKVVITKDTVLVKEGEEIDEKTAEILKKLEIEPMEVGVDIVA 204
>sp|P13553|RLA0_HALSA Acidic ribosomal protein P0 homolog OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rplP0 PE=3
SV=1
Length = 352
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 86/196 (43%), Gaps = 25/196 (12%)
Query: 14 KTKKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPM 73
+T ++ E K V + + +E Y S+ V + + + + ++ R + L + R +
Sbjct: 7 RTTEEVPEWKRQEVAELVDLLETYDSVGVVNVTGIPSKQLQDMRRGLHGQAALRMSRNTL 66
Query: 74 -------RYSQAYKVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFART------GSTA 120
+++++ G GL TN ++ F Y+ + ++T G A
Sbjct: 67 LVRALEEAGDGLDTLTEYVEGEVGLVATN------DNPFGLYQQLENSKTPAPINAGEVA 120
Query: 121 TEKVELPEGPLEQFTHEMEPF---LRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESAR 177
+ +PEG + PF L+ G R+ +G ++++ D VV EEG+ +S + +
Sbjct: 121 PNDIVVPEG---DTGIDPGPFVGELQTIGANARIQEGSIQVLDDSVVTEEGETVSDDVSN 177
Query: 178 ILRLLGIKMATFKLHL 193
+L LGI+ L L
Sbjct: 178 VLSELGIEPKEVGLDL 193
>sp|B0R4W1|RLA0_HALS3 Acidic ribosomal protein P0 homolog OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rplP0 PE=3 SV=1
Length = 352
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 86/196 (43%), Gaps = 25/196 (12%)
Query: 14 KTKKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPM 73
+T ++ E K V + + +E Y S+ V + + + + ++ R + L + R +
Sbjct: 7 RTTEEVPEWKRQEVAELVDLLETYDSVGVVNVTGIPSKQLQDMRRGLHGQAALRMSRNTL 66
Query: 74 -------RYSQAYKVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFART------GSTA 120
+++++ G GL TN ++ F Y+ + ++T G A
Sbjct: 67 LVRALEEAGDGLDTLTEYVEGEVGLVATN------DNPFGLYQQLENSKTPAPINAGEVA 120
Query: 121 TEKVELPEGPLEQFTHEMEPF---LRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESAR 177
+ +PEG + PF L+ G R+ +G ++++ D VV EEG+ +S + +
Sbjct: 121 PNDIVVPEG---DTGIDPGPFVGELQTIGANARIQEGSIQVLDDSVVTEEGETVSDDVSN 177
Query: 178 ILRLLGIKMATFKLHL 193
+L LGI+ L L
Sbjct: 178 VLSELGIEPKEVGLDL 193
>sp|P29764|RLA0_CHERU 60S acidic ribosomal protein P0 OS=Chenopodium rubrum PE=2 SV=1
Length = 321
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 76/172 (44%), Gaps = 13/172 (7%)
Query: 34 VENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPM--RYSQAY----------KV 81
++ Y + + S +N+ + + + R ++ ++ +G+ M R + + V
Sbjct: 22 LDEYSQVLIASADNVGSNQLQAIRIGLRGDSIVLMGKNTMMKRSIRLHAENTGNENLRNV 81
Query: 82 SKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPF 141
+ N GL T +V +KY+ AR G A V +P G F
Sbjct: 82 EQLFLPNVGLIFTKGDLNQVREEISKYKVGAPARFGLVAPIDVVVPPGN-TGLDPSQTSF 140
Query: 142 LRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHL 193
+ +P ++NKG VE+++ + ++G+ + A +L LGI+ ++ L++
Sbjct: 141 FQVLNIPTKINKGTVEIITAVELIKKGEKVGSSEAALLAKLGIRPFSYGLNV 192
>sp|A6UTF8|RLA0_META3 Acidic ribosomal protein P0 homolog OS=Methanococcus aeolicus
(strain Nankai-3 / ATCC BAA-1280) GN=rplP0 PE=3 SV=1
Length = 338
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 14/90 (15%)
Query: 116 TGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPES 175
GST +P GP F E L+ G+P ++KG + + D V+ +EG+ +SP+
Sbjct: 130 AGSTG-----MPPGP---FLGE----LKGAGLPAVIDKGKIAIKDDTVIVKEGEVVSPKV 177
Query: 176 ARILRLLGIKMATFKLHLICRWSAEDFELY 205
A +L LGIK L L+ + ED +Y
Sbjct: 178 AVVLSALGIKPTKVGLDLLAAY--EDGIVY 205
>sp|C6A1F5|RLA0_THESM Acidic ribosomal protein P0 homolog OS=Thermococcus sibiricus
(strain MM 739 / DSM 12597) GN=rplP0 PE=3 SV=1
Length = 338
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 79/183 (43%), Gaps = 12/183 (6%)
Query: 27 VNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPM------------R 74
V + +++Y I + ++ + RE ++ +L V R +
Sbjct: 12 VEELTKLLQDYPVIALVDVADVPAYPLSKMRESLRDKAVLRVSRNTLIELALKKAAQELN 71
Query: 75 YSQAYKVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQF 134
S K+ + + G TG+ +T + ++ + + A+ G+ A V +P GP
Sbjct: 72 DSNLEKLIEHIQGGTGILVTKINPFKLYKFLEESKKPAPAKAGAPAPRDVVVPAGPTPLS 131
Query: 135 THEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLI 194
+ ++ G+P R+ KG V + D VV + G+ ++P+ A IL LGI+ L L+
Sbjct: 132 PGPLVGEMQALGIPARIEKGKVSIQKDTVVLKAGEIITPQLANILNQLGIEPLEVGLKLL 191
Query: 195 CRW 197
+
Sbjct: 192 AAY 194
>sp|O27717|RLA0_METTH Acidic ribosomal protein P0 homolog OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rplP0 PE=3 SV=1
Length = 336
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/169 (17%), Positives = 78/169 (46%), Gaps = 10/169 (5%)
Query: 27 VNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPM----------RYS 76
V + + ++ Y+ + + + ++ + ++ R+ ++ S L+ + + +
Sbjct: 12 VQELHDLIKGYEVVGIANLADIPARQLQKMRQTLRDSALIRMSKKTLISLALEKAGRELE 71
Query: 77 QAYKVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTH 136
+S ++ G L T+M ++ + + A+ G+ A + + +P+G
Sbjct: 72 NVDSLSDYMEGQPALIFTDMNPFKLFKILEDSKTPAPAKPGAIAPDDIVVPKGDTGFAPG 131
Query: 137 EMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIK 185
+ L++ G+P ++ KG + + +D VV + G+ + P+ A IL L I+
Sbjct: 132 PILGELQQIGIPAKIEKGKIVVSNDHVVVKAGEEIPPKVAGILTRLDIQ 180
>sp|A4FZS8|RLA0_METM5 Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=rplP0 PE=3 SV=1
Length = 335
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 14/93 (15%)
Query: 115 RTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPE 174
+ GST +P GP F E L+ G+P ++KG + + D VV +EG+ +S +
Sbjct: 130 KAGSTG-----MPPGP---FLSE----LKAVGLPAAIDKGKIGIKEDTVVVKEGEVVSQK 177
Query: 175 SARILRLLGIKMATFKLHLICRWSAEDFELYRE 207
+ +L LGIK T L+++ + ED +Y E
Sbjct: 178 LSVVLSALGIKPVTVGLNVLGVY--EDGIIYTE 208
>sp|Q93572|RLA0_CAEEL 60S acidic ribosomal protein P0 OS=Caenorhabditis elegans GN=rpa-0
PE=1 SV=3
Length = 312
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/186 (20%), Positives = 76/186 (40%), Gaps = 23/186 (12%)
Query: 35 ENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPM----------RYSQAYKVSKF 84
E Y + +N+ + + +E R+ ++ + +G+ M + K+
Sbjct: 22 EEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTMIRKALRGHLGKNPSLEKLLPH 81
Query: 85 LCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPE-----GPLEQFTHEME 139
+ N G T E+ S + A+ G+ A V+LP GP E
Sbjct: 82 IVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCDVKLPPQNTGMGP------EKT 135
Query: 140 PFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLICRWSA 199
F + +P ++ +G +E+++D + +EG + + +L +LG+ F L+ R
Sbjct: 136 SFFQALQIPTKIARGTIEILNDVHLIKEGDKVGASESALLNMLGV--TPFSYGLVVRQVY 193
Query: 200 EDFELY 205
+D LY
Sbjct: 194 DDGTLY 199
>sp|A5UKU8|RLA0_METS3 Acidic ribosomal protein P0 homolog OS=Methanobrevibacter smithii
(strain PS / ATCC 35061 / DSM 861) GN=rplP0 PE=3 SV=1
Length = 335
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/171 (20%), Positives = 77/171 (45%), Gaps = 16/171 (9%)
Query: 27 VNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGR-----YPMRYSQAYK- 80
VN +++ ++ Y I + N+ + +E R+ + ++ + + + A K
Sbjct: 12 VNELKSLIDKYDVIGIVDLLNIPAKQLQEMRKSLHNKAVIRMSKKNLIDLALEDCNASKN 71
Query: 81 ----VSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTH 136
+S+ + G + T M ++ + + A+ G+ AT+ + +PEG
Sbjct: 72 NIVDLSEHMEGQVAVIATEMNPFKLYKILEDSKTSAPAKPGAIATDDIVIPEG---DTGF 128
Query: 137 EMEPFL---RKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGI 184
E PFL ++ G+P +++KG + + + V+ E G+ +S A L + I
Sbjct: 129 EPGPFLGELQQVGIPAKIDKGKIVVSKETVLVEAGEEVSAAVASTLSRMDI 179
>sp|O24573|RLA0_MAIZE 60S acidic ribosomal protein P0 OS=Zea mays GN=RP-P0 PE=1 SV=3
Length = 319
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 86/193 (44%), Gaps = 16/193 (8%)
Query: 34 VENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPM--RYSQAYK----------V 81
++ Y + + +N+ + + ++ R ++ ++ +G+ + R + Y +
Sbjct: 22 LDEYTKVLIALADNVGSKQLQDIRRGLRGDSVVLMGKNTLIRRCIKVYAEKTGNHTFDPL 81
Query: 82 SKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPF 141
L GN GL T +EV KY+ AR G A V +P G F
Sbjct: 82 MDLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGN-TGLDPSQTSF 140
Query: 142 LRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLICRWSAED 201
+ +P ++NKG VE+++ + ++G+ + + +L LGI+ ++ L + + ED
Sbjct: 141 FQVLNIPTKINKGTVEIITPVELIKKGEKVGSSESALLAKLGIRPFSYGLQVTSVY--ED 198
Query: 202 FELYR-EGLDESD 213
++ E LD S+
Sbjct: 199 GSVFSPEVLDLSE 211
>sp|O52705|RLA0_METTL Acidic ribosomal protein P0 homolog OS=Methanococcus
thermolithotrophicus GN=rplP0 PE=3 SV=1
Length = 338
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 14/91 (15%)
Query: 115 RTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPE 174
+ GST +P GP F E L+ G+P + KG + + D VV + G+ +S +
Sbjct: 130 KAGSTG-----MPPGP---FLGE----LKSVGIPAAIEKGKIGIKEDKVVAKAGEVVSHK 177
Query: 175 SARILRLLGIKMATFKLHLICRWSAEDFELY 205
A +L LGIK T L+L+ + ED +Y
Sbjct: 178 LAVVLSALGIKPVTVGLNLLAAY--EDGVIY 206
>sp|Q8PY51|RLA0_METMA Acidic ribosomal protein P0 homolog OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=rplP0 PE=3 SV=1
Length = 347
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 84/196 (42%), Gaps = 12/196 (6%)
Query: 27 VNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRYPMRYSQAYKV----- 81
+ +I+ ++++K + E + K ++ R +K +L V R + ++
Sbjct: 19 IENIKELIQSHKVFGMVRIEGILATKIQKIRRDLKDVAVLKVSRNTLTERALNQLGESIP 78
Query: 82 --SKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEME 139
+++L T L TN ++ L + + + G+ A E + + +GP +
Sbjct: 79 EMTRYLDNQTALIFTNESPFKLYKLLEQTKTPSPIKAGAIAPEDIIVQKGPTSFPPGPIL 138
Query: 140 PFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLICRWSA 199
L+ G+P ++ G V + VVC+ G+ + + A +L L I L L R +
Sbjct: 139 GELQSAGIPASIDAGKVAVKETKVVCKAGEAVPQKLATMLSKLEIYPLIVGLDL--RAAY 196
Query: 200 EDFELYRE---GLDES 212
+D +Y +DES
Sbjct: 197 DDGTIYEPELLAVDES 212
>sp|Q6M0L1|RLA0_METMP Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis
(strain S2 / LL) GN=rplP0 PE=3 SV=1
Length = 335
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 14/93 (15%)
Query: 115 RTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPE 174
+ GST +P GP F E L+ G+P ++KG + + D +V +EG+ +S +
Sbjct: 130 KAGSTG-----MPPGP---FLSE----LKAVGIPAAIDKGKIGIKEDKIVVKEGEVVSQK 177
Query: 175 SARILRLLGIKMATFKLHLICRWSAEDFELYRE 207
A +L L IK T L+++ + ED +Y E
Sbjct: 178 LAVVLSALDIKPVTVGLNVLGVY--EDGVIYTE 208
>sp|P41198|RLA0_HALVD Acidic ribosomal protein P0 homolog OS=Haloferax volcanii (strain
ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB
2012 / VKM B-1768 / DS2) GN=rplP0 PE=3 SV=2
Length = 348
Score = 39.3 bits (90), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 94/217 (43%), Gaps = 40/217 (18%)
Query: 27 VNSIRNAVENYKSIYVFSFENMRNLKFKEFREQ------IKPSRLLWVGRYPMRYSQAYK 80
V+ + + +E+Y+S+ V + + + + R + ++ SR V R + ++
Sbjct: 20 VDELVDFIESYESVGVVGVAGIPSRQLQSMRRELHGSAAVRMSRNTLVNRALDEVNDGFE 79
Query: 81 -VSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFART------GSTATEKVELPEGPLEQ 133
+ +++ G L TN ++ F +++ + ++T G A + +PEG
Sbjct: 80 ELKEYIAGQVALIGTN------DNPFALFKELEASKTPAPINAGEVAPNDIVIPEG---D 130
Query: 134 FTHEMEPF---LRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFK 190
+ PF L++ G R+ G + + D V EG+ +S E A +L LGI+
Sbjct: 131 TGVDPGPFVGELQQVGASARIMDGSIMVTEDSNVLSEGEEVSEELANVLAELGIEPKEVG 190
Query: 191 LHLICRWS----------AEDFELYREGLDESDVESA 217
L L +S A D + YR +D++SA
Sbjct: 191 LDLRGVFSEGVLFEPDELAIDVDEYR-----ADIQSA 222
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,725,596
Number of Sequences: 539616
Number of extensions: 3210560
Number of successful extensions: 9202
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 9113
Number of HSP's gapped (non-prelim): 118
length of query: 217
length of database: 191,569,459
effective HSP length: 113
effective length of query: 104
effective length of database: 130,592,851
effective search space: 13581656504
effective search space used: 13581656504
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)