Query 035720
Match_columns 217
No_of_seqs 189 out of 1241
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 09:19:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035720.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035720hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jsy_A Acidic ribosomal protei 100.0 2.6E-62 8.9E-67 413.2 19.4 185 20-204 2-198 (213)
2 3j21_k Acidic ribosomal protei 100.0 3.8E-59 1.3E-63 417.7 15.4 188 18-205 3-203 (339)
3 3iz5_s 60S acidic ribosomal pr 100.0 1.1E-58 3.8E-63 411.2 16.9 189 16-205 4-204 (319)
4 3u5i_q A0, L10E, 60S acidic ri 100.0 2.1E-58 7.1E-63 408.4 13.0 187 19-206 4-200 (312)
5 2zkr_g 60S acidic ribosomal pr 100.0 8.2E-59 2.8E-63 411.7 0.0 190 16-206 3-202 (317)
6 1vq8_G Acidic ribosomal protei 100.0 5.5E-58 1.9E-62 410.3 2.0 192 15-206 8-206 (348)
7 3a1y_G Acidic ribosomal protei 100.0 1.8E-54 6.2E-59 379.5 7.4 190 17-206 2-204 (284)
8 2j01_J 50S ribosomal protein L 99.9 3.3E-22 1.1E-26 163.2 9.6 105 19-132 2-113 (173)
9 1zav_A 50S ribosomal protein L 99.9 1.5E-22 5E-27 166.3 5.8 107 19-132 4-120 (180)
10 3sgf_H 50S ribosomal protein L 99.8 1.9E-22 6.5E-27 163.6 -0.6 93 19-111 4-102 (165)
11 3a1y_G Acidic ribosomal protei 86.7 0.42 1.4E-05 41.0 3.2 149 49-204 8-170 (284)
12 1d7q_A Translation initiation 68.1 0.58 2E-05 36.4 -1.5 50 147-197 60-120 (143)
13 2dgy_A MGC11102 protein; EIF-1 29.0 11 0.00037 27.8 -0.2 44 145-189 42-97 (111)
14 3m20_A 4-oxalocrotonate tautom 28.5 50 0.0017 20.7 3.1 26 10-36 3-28 (62)
15 3rht_A (gatase1)-like protein; 26.0 71 0.0024 26.6 4.4 38 32-69 46-85 (259)
16 2kp6_A Uncharacterized protein 25.0 26 0.00089 24.4 1.2 22 129-150 2-23 (82)
17 1gp6_A Leucoanthocyanidin diox 24.1 1.4E+02 0.0048 25.7 6.1 51 10-61 50-100 (356)
18 2opa_A Probable tautomerase YW 24.1 68 0.0023 19.5 3.1 27 10-36 3-29 (61)
19 1otf_A 4-oxalocrotonate tautom 22.0 79 0.0027 19.2 3.1 27 10-36 3-29 (62)
No 1
>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.6e-62 Score=413.22 Aligned_cols=185 Identities=17% Similarity=0.279 Sum_probs=181.6
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEEEecCCCcHHHHHHHHHhcCCCeEEEecc-hhhcc-----------ccccccccccC
Q 035720 20 KEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRY-PMRYS-----------QAYKVSKFLCG 87 (217)
Q Consensus 20 ~e~K~~~v~~l~e~l~~y~~v~i~~~~gl~~~ql~~lR~~lr~~~~~~v~KN-l~~~A-----------~~~~L~~~L~G 87 (217)
++||+++|++|++++++|++++|++|+||+++|+++||++||++++++|||| ||++| ++++|.++|+|
T Consensus 2 ~e~K~~~v~el~e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~~~~~v~KNtL~r~Al~~~~~~e~~~~~~~L~~~l~G 81 (213)
T 3jsy_A 2 APWKIEEVKTLKGLIKSKPVVAIVDMMDVPAPQLQEIRDKIRDKVKLRMSRNTLIIRALKEAAEELNNPKLAELANYVER 81 (213)
T ss_dssp CHHHHHHHHHHHHHHHHSSEEEEEECCSCCHHHHHHHHHHHTTTEEEEECCHHHHHHHHHHHHHHTTCGGGGGGGGGCCS
T ss_pred chHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhCCCEEEEEeHHHHHHHHhhchhhhcccchhHHHHhCcC
Confidence 5899999999999999999999999999999999999999998789999999 99999 48899999999
Q ss_pred cEEEEEecCCHHHHHHHHhhcccccccccCCCccceEEeCCCCCCCCCCCchHHHHhcCCceEEecceEEEecceEEEec
Q 035720 88 NTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEE 167 (217)
Q Consensus 88 ~~aliFt~~dp~~v~k~l~~~~~~~~ak~G~ia~~dv~I~~G~~~~~~~~~~~~~~~lgiptki~~G~i~i~~d~~v~k~ 167 (217)
|+||+||++||.+++++|.+|+.++|||+|++||+||+||+|||+..||||+++||+|||||+|++|+|+|.+|++||++
T Consensus 82 ~~~l~Ft~~dp~~v~k~l~~~~~~~~Ar~GaiAp~dV~ip~G~t~~~p~~~~~~~q~lgiptki~~G~I~i~~d~~v~k~ 161 (213)
T 3jsy_A 82 GAAILVTDMNPFKLYKLLEENKSPAPVRGGQIAPCDIKVEKGSTGMPPGPFLGELKSVGIPAAIEKGKIAIKEDKVVVKK 161 (213)
T ss_dssp SEEEEEESSCHHHHHHHHHHSCEEECCCTTCBCSSCEEECSEEEEECSSTHHHHHHHTTCCEEEETTEEEECSCEEEECT
T ss_pred CeEEEEeCCCHHHHHHHHHHcCCcccccCCCcCCceEEECCCCCCCCCCccHHHHHHcCCceEeecCeEEEccceEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccChhHHHHHHHcCCceeEEEEEEEEEEeCCceEE
Q 035720 168 GKPLSPESARILRLLGIKMATFKLHLICRWSAEDFEL 204 (217)
Q Consensus 168 G~~i~~~qA~lL~~lgi~p~~~~l~l~~~~~~g~~~~ 204 (217)
||+||++||+||++|||+|++|+|.|.++||+|.+|.
T Consensus 162 G~~v~~~~A~lL~~l~i~p~~~~l~l~~~~~~g~i~~ 198 (213)
T 3jsy_A 162 GEVVSPKLAAVLDRLGIKPIKVGLNILAVYEDGIIYT 198 (213)
T ss_dssp TSBCCHHHHHHHHHTTCCCEEESCEEEEEEETTEEEC
T ss_pred CCCcCHHHHHHHHHcCCCcEEEEEEEEEEEeCCceeC
Confidence 9999999999999999999999999999999999996
No 2
>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=3.8e-59 Score=417.68 Aligned_cols=188 Identities=22% Similarity=0.376 Sum_probs=181.1
Q ss_pred CChhHHHHHHHHHHHHHhcCCeEEEEEecCCCcHHHHHHHHHhcCC-CeEEEecc-hhhcc-----------cccccccc
Q 035720 18 KGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPS-RLLWVGRY-PMRYS-----------QAYKVSKF 84 (217)
Q Consensus 18 k~~e~K~~~v~~l~e~l~~y~~v~i~~~~gl~~~ql~~lR~~lr~~-~~~~v~KN-l~~~A-----------~~~~L~~~ 84 (217)
+.++||.++|++|++++++|+++||++|+||+++|+++||+.||+. ++|+|||| ||++| ++++|.++
T Consensus 3 ~~~e~K~~~v~el~e~l~~~~~v~v~~~~gl~v~ql~~lR~~lr~~g~~~~v~KNtL~r~Al~~~~~~e~~~~l~~L~~~ 82 (339)
T 3j21_k 3 HVAEWKKKEVEELANLIKSYPVVALVDVSSMPAYPLSQMRRLIRENNGLLRVSRNTLIELAIKKVAQELGKPELEKLINY 82 (339)
T ss_dssp ---CCTTTHHHHHHHHHHHSSEEEEEECTTCCTTHHHHHHHHHHHTTEEEECCHHHHSCHHHHHHHSSCCCSSSSSSSCC
T ss_pred ccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhcCCeEEEEEhHHHHHHHHhcChhhhccccHHHHHHH
Confidence 4688999999999999999999999999999999999999999965 89999999 99999 37899999
Q ss_pred ccCcEEEEEecCCHHHHHHHHhhcccccccccCCCccceEEeCCCCCCCCCCCchHHHHhcCCceEEecceEEEecceEE
Q 035720 85 LCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVV 164 (217)
Q Consensus 85 L~G~~aliFt~~dp~~v~k~l~~~~~~~~ak~G~ia~~dv~I~~G~~~~~~~~~~~~~~~lgiptki~~G~i~i~~d~~v 164 (217)
|+||+||+||++||.+++++|.+|+.++|||+|++||+||+||+|||++.||||+++||+|||||+|++|+|+|.+|++|
T Consensus 83 L~G~~~l~Ft~~dp~~v~k~l~~~~~~~~Ar~GaiAp~dV~Ip~G~t~~~p~~~~~~fq~lgiptki~~G~I~i~~d~~v 162 (339)
T 3j21_k 83 IEGGAGILVTTMNPFKLYKFLQQNRQPAPAKPGAKVPKDVVIPAGPTSLAPGPIVGQMQAMGIPARIERGKVTIQKDTVV 162 (339)
T ss_dssp CCTTEEEEEESSCHHHHHHHHHHSCCCCCCCTTCBCSSCEEECCEECSCCSSHHHHHHHHHTCCEEEETTEEEECSCEEE
T ss_pred hcCCeEEEEECCCHHHHHHHHHHcCCcccccCCCcCCceEEecCCCCCCCCCccHHHHHHcCCCeEeccCeEEEccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccChhHHHHHHHcCCceeEEEEEEEEEEeCCceEEc
Q 035720 165 CEEGKPLSPESARILRLLGIKMATFKLHLICRWSAEDFELY 205 (217)
Q Consensus 165 ~k~G~~i~~~qA~lL~~lgi~p~~~~l~l~~~~~~g~~~~~ 205 (217)
|++|++||++||+||++|||+|++|+|+|.++||+|.+|.-
T Consensus 163 ~k~G~~v~~~~A~lL~~l~i~p~~~~l~l~~~~~~g~i~~~ 203 (339)
T 3j21_k 163 LKAGEEITPELANILNALGIQPLEVGLDLLAVYEDGIIYTP 203 (339)
T ss_dssp ECTTSBCCHHHHHHHHHHTCCCSCCSCEEEEEEETTEEECH
T ss_pred EecCCCcCHHHHHHHHHcCCCcEEeeeeEEEEEeCCcEecH
Confidence 99999999999999999999999999999999999999963
No 3
>3iz5_s 60S acidic ribosomal protein P0 (L10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_s
Probab=100.00 E-value=1.1e-58 Score=411.22 Aligned_cols=189 Identities=21% Similarity=0.361 Sum_probs=182.1
Q ss_pred ccCChhHHHHHHHHHHHHHhcCCeEEEEEecCCCcHHHHHHHHHhcCCCeEEEecc-hhhcc-----------ccccccc
Q 035720 16 KKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRY-PMRYS-----------QAYKVSK 83 (217)
Q Consensus 16 ~kk~~e~K~~~v~~l~e~l~~y~~v~i~~~~gl~~~ql~~lR~~lr~~~~~~v~KN-l~~~A-----------~~~~L~~ 83 (217)
++..++||.++|++|++++++|+++||++|+||+++|+++||+.||++++++|||| ||++| ++++|.+
T Consensus 4 ~~~~~e~K~~~v~el~e~l~~y~~v~vv~~~gl~v~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~e~~~~~~le~L~~ 83 (319)
T 3iz5_s 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNKEFLELMP 83 (319)
T ss_dssp CSSSCCCSSHHHHHHHHHHHHCSEEEEEECTTSCHHHHHHHHHHHHHHSCEECCSTTTCCHHHHHHHSSSCCSSSSSSSC
T ss_pred ccchHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhCCcEEEEEhHHHHHHHHhhchhhhccccHHHHHH
Confidence 34568999999999999999999999999999999999999999997789999999 99999 4788999
Q ss_pred cccCcEEEEEecCCHHHHHHHHhhcccccccccCCCccceEEeCCCCCCCCCCCchHHHHhcCCceEEecceEEEecceE
Q 035720 84 FLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFV 163 (217)
Q Consensus 84 ~L~G~~aliFt~~dp~~v~k~l~~~~~~~~ak~G~ia~~dv~I~~G~~~~~~~~~~~~~~~lgiptki~~G~i~i~~d~~ 163 (217)
+|+||+||+||++||.+++++|.+|+.++|||+|++||+||+||+|||+ |+|.++++||+|||||+|++|+|+|.+|++
T Consensus 84 ~L~G~~gl~FT~~dp~~v~k~l~~~k~~~pAr~GaiAp~dV~VpaG~tg-~~P~~~s~fq~LgiptkI~kG~I~I~~d~~ 162 (319)
T 3iz5_s 84 LLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTG-LDPSQTSFFQVLNIPTKINKGTVEIITPVE 162 (319)
T ss_dssp CCCTTEEEEEESSCHHHHHHHHHHSCEEECCCTTCBCSSCEEECCEECC-CCSSCTHHHHHHTCCEEEETTEEEECSCEE
T ss_pred HhcCCeEEEEECCChHHHHHHHHHccccccccCCCcCCceEEECCCCCC-CCCcchHHHHHcCCceEEecCeEEEcCceE
Confidence 9999999999999999999999999999999999999999999999999 777889999999999999999999999999
Q ss_pred EEecCcccChhHHHHHHHcCCceeEEEEEEEEEEeCCceEEc
Q 035720 164 VCEEGKPLSPESARILRLLGIKMATFKLHLICRWSAEDFELY 205 (217)
Q Consensus 164 v~k~G~~i~~~qA~lL~~lgi~p~~~~l~l~~~~~~g~~~~~ 205 (217)
||++||+||++||+||++|||+|++|+|.|.++||+|.+|.-
T Consensus 163 v~k~G~~v~~~~A~lL~~l~i~p~~f~l~l~~~~d~g~i~~~ 204 (319)
T 3iz5_s 163 LIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSGSVFSP 204 (319)
T ss_dssp EECTTSBCCHHHHHHHHHHTCCCEEESCEEEEEEETTEEECH
T ss_pred EEecCCCcCHHHHHHHHHhCCCceEEEeeeeEEEeCCceeCH
Confidence 999999999999999999999999999999999999999963
No 4
>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8
Probab=100.00 E-value=2.1e-58 Score=408.37 Aligned_cols=187 Identities=24% Similarity=0.411 Sum_probs=106.4
Q ss_pred ChhHHHHHHHHHHHHHhcCCeEEEEEecCCCcHHHHHHHHHhcCCCeEEEecc-hhhcc---------ccccccccccCc
Q 035720 19 GKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRY-PMRYS---------QAYKVSKFLCGN 88 (217)
Q Consensus 19 ~~e~K~~~v~~l~e~l~~y~~v~i~~~~gl~~~ql~~lR~~lr~~~~~~v~KN-l~~~A---------~~~~L~~~L~G~ 88 (217)
++++|+++|++|++++++|+.++|++|+||+++|+++||++||+.++++|||| ||++| ++++|.++|+||
T Consensus 4 ~re~K~~~v~el~e~l~~~~~v~vv~~~gl~v~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~~~~~le~L~~~L~G~ 83 (312)
T 3u5i_q 4 IREKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSDLPDFEKLLPFVKGN 83 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHCSEEEEEECSSCCHHHHHHHHHHHSSSCEEEECCHHHHHHHHHTTSSSSCGGGGTGGGCCSS
T ss_pred cHHHHHHHHHHHHHHHHhCCEEEEEecCCCCHHHHHHHHHHHhcCceEEEeehHHHHHHHhhCcccccChHHHHHhccCC
Confidence 57999999999999999999999999999999999999999998789999999 99999 478999999999
Q ss_pred EEEEEecCCHHHHHHHHhhcccccccccCCCccceEEeCCCCCCCCCCCchHHHHhcCCceEEecceEEEecceEEEecC
Q 035720 89 TGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEG 168 (217)
Q Consensus 89 ~aliFt~~dp~~v~k~l~~~~~~~~ak~G~ia~~dv~I~~G~~~~~~~~~~~~~~~lgiptki~~G~i~i~~d~~v~k~G 168 (217)
+||+||++||.+++++|.+|++++|||+|++||+||+||+|||+ |+|.++++||+|||||+|++|+|+|.+|++||++|
T Consensus 84 ~gl~Ft~~dp~~v~k~l~~~k~~~pAr~GaiAp~dV~Ip~G~tg-~~P~~~s~fq~Lgiptki~kG~I~I~~d~~v~k~G 162 (312)
T 3u5i_q 84 VGFVFTNEPLTEIKNVIVSNRVAAPARAGAVAPEDIWVRAVNTG-MEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDAG 162 (312)
T ss_dssp EEEEEESSCHHHHHHHHHTSSCCC--------------------------------------------------------
T ss_pred EEEEEECCCHHHHHHHHHhccCcccccCCCcCCceEEECCCCCC-CCCcchHHHHHcCCCeEeeCCEEEEccceEEEeCC
Confidence 99999999999999999999999999999999999999999999 77788999999999999999999999999999999
Q ss_pred cccChhHHHHHHHcCCceeEEEEEEEEEEeCCceEEcc
Q 035720 169 KPLSPESARILRLLGIKMATFKLHLICRWSAEDFELYR 206 (217)
Q Consensus 169 ~~i~~~qA~lL~~lgi~p~~~~l~l~~~~~~g~~~~~~ 206 (217)
|+||++||+||++|||+|++|+|.|.++||+|.+|.-+
T Consensus 163 ~~v~~~~A~lL~~l~i~p~~~~l~l~~~~d~g~i~~~~ 200 (312)
T 3u5i_q 163 NKVGQSEASLLNLLNISPFTFGLTVVQVYDNGQVFPXX 200 (312)
T ss_dssp ---------------------CCEEEEEEESSCCCCST
T ss_pred CCcCHHHHHHHHHcCcCcEEEEEEEEEEecCCceeccc
Confidence 99999999999999999999999999999999998643
No 5
>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=8.2e-59 Score=411.73 Aligned_cols=190 Identities=18% Similarity=0.321 Sum_probs=0.0
Q ss_pred ccCChhHHHHHHHHHHHHHhcCCeEEEEEecCCCcHHHHHHHHHhcCCCeEEEecc-hhhcc---------ccccccccc
Q 035720 16 KKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRY-PMRYS---------QAYKVSKFL 85 (217)
Q Consensus 16 ~kk~~e~K~~~v~~l~e~l~~y~~v~i~~~~gl~~~ql~~lR~~lr~~~~~~v~KN-l~~~A---------~~~~L~~~L 85 (217)
+...++||.++|++|++++++|+.++|++|+||+++|+++||++||++++++|||| ||++| ++++|.++|
T Consensus 3 ~~~~~e~K~~~V~eL~e~l~~~~~v~vvd~~gl~v~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~~~~~~e~L~~~L 82 (317)
T 2zkr_g 3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKLLPHI 82 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccchHHHHHHHHHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHhcCcEEEEEeHHHHHHHHhhCcccccchhhhhhcc
Confidence 34568899999999999999999999999999999999999999998799999999 99999 478899999
Q ss_pred cCcEEEEEecCCHHHHHHHHhhcccccccccCCCccceEEeCCCCCCCCCCCchHHHHhcCCceEEecceEEEecceEEE
Q 035720 86 CGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVC 165 (217)
Q Consensus 86 ~G~~aliFt~~dp~~v~k~l~~~~~~~~ak~G~ia~~dv~I~~G~~~~~~~~~~~~~~~lgiptki~~G~i~i~~d~~v~ 165 (217)
+||+||+||++||.+++++|.+|+.++|||+|++||+||+||+|||+ |+|+++++||+|||||+|++|+|+|.+|++||
T Consensus 83 ~G~~al~Ft~~Dp~~vaK~l~~f~~~~pAr~GaiAp~dV~Ip~G~t~-~~p~~~~~fq~LgipTkI~kG~I~i~~d~~v~ 161 (317)
T 2zkr_g 83 RGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTG-LGPEKTSFFQALGITTKISRGTIEILSDVQLI 161 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCEEEEEECCCHHHHHHHHHHhCccchhccCCcCCceEEeCCCCCC-CCCcchHHHHHcCCCeEeeCCeEEEecceEEe
Confidence 99999999999999999999999999999999999999999999999 88888999999999999999999999999999
Q ss_pred ecCcccChhHHHHHHHcCCceeEEEEEEEEEEeCCceEEcc
Q 035720 166 EEGKPLSPESARILRLLGIKMATFKLHLICRWSAEDFELYR 206 (217)
Q Consensus 166 k~G~~i~~~qA~lL~~lgi~p~~~~l~l~~~~~~g~~~~~~ 206 (217)
++||+||++||+||++|||+|++|+|.|+++||+|.+|.-+
T Consensus 162 k~G~~v~~~~A~lL~~l~i~p~~~~l~l~~~~d~g~~~~~~ 202 (317)
T 2zkr_g 162 KTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPE 202 (317)
T ss_dssp -----------------------------------------
T ss_pred cCCCCcCHHHHHHHHHcCCCceeeeeeeeEEEecCcccchH
Confidence 99999999999999999999999999999999999998743
No 6
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB: 1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I* 1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I* 1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Probab=100.00 E-value=5.5e-58 Score=410.27 Aligned_cols=192 Identities=19% Similarity=0.261 Sum_probs=24.7
Q ss_pred cccCChhHHHHHHHHHHHHHhcCCeEEEEEecCCCcHHHHHHHHHhcCCCeEEEecc-hhhcc----c--cccccccccC
Q 035720 15 TKKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRLLWVGRY-PMRYS----Q--AYKVSKFLCG 87 (217)
Q Consensus 15 ~~kk~~e~K~~~v~~l~e~l~~y~~v~i~~~~gl~~~ql~~lR~~lr~~~~~~v~KN-l~~~A----~--~~~L~~~L~G 87 (217)
+.++.++||.++|++|++++++|+.++|++|+||+++|+++||+.||+.++|+|+|| ||++| + ++.|.++|+|
T Consensus 8 ~~k~~~e~K~~~V~eL~e~l~~~~~v~vvdy~GLtv~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~~le~L~~~LkG 87 (348)
T 1vq8_G 8 KTETIPEWKQEEVDAIVEMIESYESVGVVNIAGIPSRQLQDMRRDLHGTAELRVSRNTLLERALDDVDDGLEDLNGYITG 87 (348)
T ss_dssp ----CCHHHHHHHHHHHHHHHC---------------------------------CHHHHHHHHTC--------------
T ss_pred cccccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHHhcceEEEeHHHHHHHHHHhCCcchHHHHHhccC
Confidence 346789999999999999999999999999999999999999999997799999999 99999 3 8999999999
Q ss_pred cEEEEEecCCHHHHHHHHhhcccccccccCCCccceEEeCCCCCCCCCCCchHHHHhcCCceEEecceEEEecceEEEec
Q 035720 88 NTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEE 167 (217)
Q Consensus 88 ~~aliFt~~dp~~v~k~l~~~~~~~~ak~G~ia~~dv~I~~G~~~~~~~~~~~~~~~lgiptki~~G~i~i~~d~~v~k~ 167 (217)
|+|++||++||.+++++|.+|++++|||+|++||++|+||+|+|++.||+|+++||+|||||+|++|+|+|.+|++||++
T Consensus 88 ~tal~Ft~~Dp~~vaK~l~~f~~~~pAr~GaiAp~dV~IpaG~t~~~P~~~~~~fq~LgIPTkI~kG~I~I~~d~~v~k~ 167 (348)
T 1vq8_G 88 QVGLIGTDDNPFSLFQELEASKTPAPIGAGEVAPNDIVIPEGDTGVDPGPFVGELQSVGADARIQEGSIQVLSDSTVLDT 167 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCHHHHHHHHHHhcccchhhcCCcCCceEEeCCCCCCCCCCchHHHHHHcCCCEEeccCceEecCceEEeeC
Confidence 99999999999999999999999999999999999999999999977999999999999999999999999999999999
Q ss_pred CcccChhHHHHHHHcCCceeEEEEEEEEEEeCCceEEcc
Q 035720 168 GKPLSPESARILRLLGIKMATFKLHLICRWSAEDFELYR 206 (217)
Q Consensus 168 G~~i~~~qA~lL~~lgi~p~~~~l~l~~~~~~g~~~~~~ 206 (217)
|++||++||+||++|||+|++|+|.|+++|++|.+|.-+
T Consensus 168 G~~v~~~~A~LL~~LgI~p~~f~l~l~~~~d~g~~~~~~ 206 (348)
T 1vq8_G 168 GEEVSQELSNVLNELGIEPKEVGLDLRAVFADGVLFEPE 206 (348)
T ss_dssp ---------------------------------------
T ss_pred CCCcCHHHHHHHHHcCCCceeeeeeeEEEEeCCcccCHH
Confidence 999999999999999999999999999999999988743
No 7
>3a1y_G Acidic ribosomal protein P0; stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.8e-54 Score=379.46 Aligned_cols=190 Identities=22% Similarity=0.341 Sum_probs=112.0
Q ss_pred cCChhHHHHHHHHHHHHHhcCCeEEEEEecCCCcHHHHHHHHHhcCC-CeEEEecc-hhhcc----c-------cccccc
Q 035720 17 KKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPS-RLLWVGRY-PMRYS----Q-------AYKVSK 83 (217)
Q Consensus 17 kk~~e~K~~~v~~l~e~l~~y~~v~i~~~~gl~~~ql~~lR~~lr~~-~~~~v~KN-l~~~A----~-------~~~L~~ 83 (217)
++.++||.++|++|++++++|+.++|++|+||+++|+++||++||+. ++++|||| ||++| + +++|.+
T Consensus 2 ~~~~e~K~~~v~el~~~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~g~~~~v~KNtL~~~Al~~~~~~~~~~~~~~L~~ 81 (284)
T 3a1y_G 2 AHVAEWKKKEVEELAKLIKSYPVIALVDVSSMPAYPLSQMRRLIRENGGLLRVSRNTLIELAIKKAAKELGKPELEKLVE 81 (284)
T ss_dssp CSSCCCTTTHHHHHHHHHTTCSEEEEEECTTCCHHHHHHHHHHHHHTTEEEEECSSSSCCHHHHHHHTTCSCSSTTSSSC
T ss_pred CCcHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHhcCcEEEEeHHHHHHHHHhhCccccccccHHHHhh
Confidence 56789999999999999999999999999999999999999999964 99999999 99999 3 899999
Q ss_pred cccCcEEEEEecCCHHHHHHHHhhcccccccccCCCccceEEeCCCCCCCCCCCchHHHHhcCCceEEecceEEEecceE
Q 035720 84 FLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFV 163 (217)
Q Consensus 84 ~L~G~~aliFt~~dp~~v~k~l~~~~~~~~ak~G~ia~~dv~I~~G~~~~~~~~~~~~~~~lgiptki~~G~i~i~~d~~ 163 (217)
+|+||+|++||++||.+++++|.+|+.++|||+|.+|+++|+||+|+++..||+++++||+|||||+|++|+|+|.+|++
T Consensus 82 ~l~G~~al~Ft~~dp~~vak~l~~f~~~~~ar~Gaia~~dv~ip~g~~~~~p~~~~~~l~~LgIptki~~g~I~i~~d~~ 161 (284)
T 3a1y_G 82 YIDRGAGILVTNMNPFKLYKFLQQNRQPAPAKPGAVVPKDVVVPAGPTPLAPGPIVGQMQALGIPARIEKGKVTIQKDTT 161 (284)
T ss_dssp CCCTTEEEEEESSCHHHHHHHHHHCCCC----------------------------------------------------
T ss_pred hcCCCEEEEEECCCHHHHHHHHHHhcchhhhhcCCccceeEEecCCCCCCCCcchHHHHHHCCCCeEEecCeeEeecceE
Confidence 99999999999999999999999999999999999999999999999997799999999999999999999999999999
Q ss_pred EEecCcccChhHHHHHHHcCCceeEEEEEEEEEEeCCceEEcc
Q 035720 164 VCEEGKPLSPESARILRLLGIKMATFKLHLICRWSAEDFELYR 206 (217)
Q Consensus 164 v~k~G~~i~~~qA~lL~~lgi~p~~~~l~l~~~~~~g~~~~~~ 206 (217)
||++|++|+++||+||++|||+|++|++.+.++|++|.+|.-+
T Consensus 162 v~~~G~~l~~~~a~lL~~L~i~~~~~~l~i~~~~~~~~~~~~~ 204 (284)
T 3a1y_G 162 VLKAGEVITPELANILNALGIQPLEVGLDVLAVYEDGIVYTPD 204 (284)
T ss_dssp ---------------------CCCCCCCEEEEEEETTEEECHH
T ss_pred EEecCCCcCHHHHHHHHHcCCCHHHHHHHHHHHhhccccCCHH
Confidence 9999999999999999999999999999999999999998854
No 8
>2j01_J 50S ribosomal protein L10; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_J 3d5b_J 3d5d_J 3i8i_Y 3kir_J 3kit_J 3kiw_J 3kiy_J 3mrz_I 3ms1_I 3pyt_I 3pyr_I 3pyo_I 3pyv_I
Probab=99.87 E-value=3.3e-22 Score=163.21 Aligned_cols=105 Identities=10% Similarity=0.233 Sum_probs=96.3
Q ss_pred ChhHHHHHHHHHHHHHhcCC-eEEEEEecCCCcHHHHHHHHHhcC-CCeEEEecc-hhhcc----ccccccccccCcEEE
Q 035720 19 GKEHKEVIVNSIRNAVENYK-SIYVFSFENMRNLKFKEFREQIKP-SRLLWVGRY-PMRYS----QAYKVSKFLCGNTGL 91 (217)
Q Consensus 19 ~~e~K~~~v~~l~e~l~~y~-~v~i~~~~gl~~~ql~~lR~~lr~-~~~~~v~KN-l~~~A----~~~~L~~~L~G~~al 91 (217)
.+++|.++|++|++.+++|+ .+++++|+|++++|+++||++||+ +++++|+|| ||++| +++. .++|+||+|+
T Consensus 2 ~~~~K~~~v~el~~~l~~~~~~v~v~~~~gltv~~~~~LR~~lr~~g~~~~V~KNtL~~~Al~~~~~~~-~~~l~G~~a~ 80 (173)
T 2j01_J 2 PNKRNVELLATLKENLERAQGSFFLVNYQGLPAKETHALRQALKQNGARLFVAKNTLIRLALKELGLPE-LDGLQGPSAV 80 (173)
T ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEEcCCCCHHHHHHHHHHHHHCCcEEEEehhHHHHHHHhcCCCCc-cccccCCEEE
Confidence 47899999999999999999 999999999999999999999996 589999999 99999 8999 9999999999
Q ss_pred EEecCCHHHHHHHHhhcccccccccCCCccceEEeCCCCCC
Q 035720 92 FLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLE 132 (217)
Q Consensus 92 iFt~~dp~~v~k~l~~~~~~~~ak~G~ia~~dv~I~~G~~~ 132 (217)
+|| +||.++++++.+|.+.. +++.++|++|.++
T Consensus 81 ~fs-~dp~~~ak~l~~f~k~~-------~~~~l~ikgg~~e 113 (173)
T 2j01_J 81 VFY-EDPVAAAKTLVQFAKSN-------PKGIPQVKSGLLQ 113 (173)
T ss_pred EEe-CCHHHHHHHHHHHHHhC-------CCCCeEEEEEEEC
Confidence 999 99999999999986543 2457888888765
No 9
>1zav_A 50S ribosomal protein L10; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: d.58.62.1 PDB: 1zaw_A 1zax_A
Probab=99.86 E-value=1.5e-22 Score=166.30 Aligned_cols=107 Identities=17% Similarity=0.244 Sum_probs=96.0
Q ss_pred ChhHHHHHHHHHHHHHhcCCeEEEEEecCCCcHHHHHHHHHhcC----CCeEEEecc-hhhcc----ccccccccccCcE
Q 035720 19 GKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKP----SRLLWVGRY-PMRYS----QAYKVSKFLCGNT 89 (217)
Q Consensus 19 ~~e~K~~~v~~l~e~l~~y~~v~i~~~~gl~~~ql~~lR~~lr~----~~~~~v~KN-l~~~A----~~~~L~~~L~G~~ 89 (217)
.+++|.++|++|++.+++|+.+++++|+|++++|+++||++||+ +++++|+|| ||++| +++.|.++|+||+
T Consensus 4 ~~~~K~~~v~el~~~l~~~~~v~v~~~~gltv~q~~~LR~~lr~~~~~g~~~~V~KNtL~~~Al~~~~~~~L~~~l~G~~ 83 (180)
T 1zav_A 4 TRQQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTLLNLALKNAEYEGYEEFLKGPT 83 (180)
T ss_dssp CHHHHHHHHHHHHHHHTTCSEEEEECCTTCCHHHHHHHHHHHHHHHTTSEEEEEECHHHHHHHHHHTTCCSCGGGCSSSE
T ss_pred CHHHHHHHHHHHHHHHHhCCEEEEEEeCCCCHHHHHHHHHHHHhcccCCeEEEEehHHHHHHHHccCChhhHHHhCcCCE
Confidence 48899999999999999999999999999999999999999995 589999999 99999 8999999999999
Q ss_pred EEEEec-CCHHHHHHHHhhcccccccccCCCccceEEeCCCCCC
Q 035720 90 GLFLTN-MPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLE 132 (217)
Q Consensus 90 aliFt~-~dp~~v~k~l~~~~~~~~ak~G~ia~~dv~I~~G~~~ 132 (217)
|++||+ +||.++++++.+|.+.. . ++.++|++|.++
T Consensus 84 a~~fs~~~dp~~~ak~l~~f~k~~-----~--~~~l~ikgg~~e 120 (180)
T 1zav_A 84 AVLYVTEGDPVEAVKIIYNFYKDK-----K--ADLSRLKGGFLE 120 (180)
T ss_dssp EEEEESSSCTHHHHHHHHHHHHHT-----T--CCGGGEEEEEET
T ss_pred EEEEecCCCHHHHHHHHHHHHHhC-----C--CCCeEEEEEEEC
Confidence 999999 99999999999986543 1 245667777554
No 10
>3sgf_H 50S ribosomal protein L10; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 3uos_H 3j12_J* 3j0w_J* 3j0y_J* 3j11_J* 3j0t_J* 3j14_J*
Probab=99.83 E-value=1.9e-22 Score=163.60 Aligned_cols=93 Identities=16% Similarity=0.145 Sum_probs=89.2
Q ss_pred ChhHHHHHHHHHHHHHhcCCeEEEEEecCCCcHHHHHHHHHhcC-CCeEEEecc-hhhcc----ccccccccccCcEEEE
Q 035720 19 GKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKP-SRLLWVGRY-PMRYS----QAYKVSKFLCGNTGLF 92 (217)
Q Consensus 19 ~~e~K~~~v~~l~e~l~~y~~v~i~~~~gl~~~ql~~lR~~lr~-~~~~~v~KN-l~~~A----~~~~L~~~L~G~~ali 92 (217)
+|++|.++|++|++.|++|+.++++||+|++++|+++||++||+ +++++|+|| ||++| +++.|.++|+||+|++
T Consensus 4 ~r~~K~~~V~el~~~l~~~~~v~v~~~~gltv~q~~~LR~~lr~~g~~~~V~KNtL~~~Al~~~~~~~L~~~l~G~tai~ 83 (165)
T 3sgf_H 4 NLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKAGREAGVYMRVVRNTLLRRAVEGTPFECLKDAFVGPTLIA 83 (165)
T ss_dssp HHHHHHHHHHHHHHHHSCSCEEECCCTTCCHHHHHHHTTTTTSSCCSSEECCCCTTTTTTTTTCTTTCTTCSTTCCSCCC
T ss_pred CHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHHcCcEEEEECcHHHHHHHhcCCcchhHHhCcCCEEEE
Confidence 58999999999999999999999999999999999999999997 689999999 99999 8999999999999999
Q ss_pred EecCCHHHHHHHHhhcccc
Q 035720 93 LTNMPKEEVESLFNKYEDY 111 (217)
Q Consensus 93 Ft~~dp~~v~k~l~~~~~~ 111 (217)
||++||.++++++.+|.+.
T Consensus 84 fs~~dp~~~aK~l~~f~K~ 102 (165)
T 3sgf_H 84 YSMEHPGAAARLFKEFAKA 102 (165)
T ss_dssp EEEECSSCSHHHHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHh
Confidence 9999999999999998764
No 11
>3a1y_G Acidic ribosomal protein P0; stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=86.67 E-value=0.42 Score=41.05 Aligned_cols=149 Identities=13% Similarity=0.063 Sum_probs=50.8
Q ss_pred CcHHHHHHHHHhcCCCeEEEecc-hhhccccccccccccCc-EEEEEecCCHHH--HHHHHhh-----cccccccccCCC
Q 035720 49 RNLKFKEFREQIKPSRLLWVGRY-PMRYSQAYKVSKFLCGN-TGLFLTNMPKEE--VESLFNK-----YEDYDFARTGST 119 (217)
Q Consensus 49 ~~~ql~~lR~~lr~~~~~~v~KN-l~~~A~~~~L~~~L~G~-~aliFt~~dp~~--v~k~l~~-----~~~~~~ak~G~i 119 (217)
....+.+||..+.+...+++..- =|+.+.+.+|...|++. +-+.+.+..... +...-.+ +..-...-.|.
T Consensus 8 K~~~v~el~~~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~g~~~~v~KNtL~~~Al~~~~~~~~~~~~~~L~~~l~G~- 86 (284)
T 3a1y_G 8 KKKEVEELAKLIKSYPVIALVDVSSMPAYPLSQMRRLIRENGGLLRVSRNTLIELAIKKAAKELGKPELEKLVEYIDRG- 86 (284)
T ss_dssp TTTHHHHHHHHHTTCSEEEEEECTTCCHHHHHHHHHHHHHTTEEEEECSSSSCCHHHHHHHTTCSCSSTTSSSCCCCTT-
T ss_pred HHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHhcCcEEEEeHHHHHHHHHhhCccccccccHHHHhhhcCCC-
Confidence 45678899999987556666655 55555677777778776 666666544322 2222211 11111111121
Q ss_pred ccceEEeCCCCCCCCCCCchHHHHhcCCceEEecceEEEecceEEEecCcccChhHHHHHHHcCCceeEEEEEEE-----
Q 035720 120 ATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLI----- 194 (217)
Q Consensus 120 a~~dv~I~~G~~~~~~~~~~~~~~~lgiptki~~G~i~i~~d~~v~k~G~~i~~~qA~lL~~lgi~p~~~~l~l~----- 194 (217)
.-+..-. .-|......|.+...|.-...|.|...+.++....|+.++.+.+..|+.|||++...+.+|.
T Consensus 87 --~al~Ft~----~dp~~vak~l~~f~~~~~ar~Gaia~~dv~ip~g~~~~~p~~~~~~l~~LgIptki~~g~I~i~~d~ 160 (284)
T 3a1y_G 87 --AGILVTN----MNPFKLYKFLQQNRQPAPAKPGAVVPKDVVVPAGPTPLAPGPIVGQMQALGIPARIEKGKVTIQKDT 160 (284)
T ss_dssp --EEEEEES----SCHHHHHHHHHHCCCC---------------------------------------------------
T ss_pred --EEEEEEC----CCHHHHHHHHHHhcchhhhhcCCccceeEEecCCCCCCCCcchHHHHHHCCCCeEEecCeeEeecce
Confidence 1122211 13445678899999999999999999999999999988888889999999999999999998
Q ss_pred EEEeCCceEE
Q 035720 195 CRWSAEDFEL 204 (217)
Q Consensus 195 ~~~~~g~~~~ 204 (217)
.++..|+...
T Consensus 161 ~v~~~G~~l~ 170 (284)
T 3a1y_G 161 TVLKAGEVIT 170 (284)
T ss_dssp ----------
T ss_pred EEEecCCCcC
Confidence 4555555443
No 12
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=68.13 E-value=0.58 Score=36.37 Aligned_cols=50 Identities=20% Similarity=0.277 Sum_probs=38.2
Q ss_pred CceEEecceEEE-ecceEEE-------ecCccc---ChhHHHHHHHcCCceeEEEEEEEEEE
Q 035720 147 MPVRLNKGVVEL-VSDFVVC-------EEGKPL---SPESARILRLLGIKMATFKLHLICRW 197 (217)
Q Consensus 147 iptki~~G~i~i-~~d~~v~-------k~G~~i---~~~qA~lL~~lgi~p~~~~l~l~~~~ 197 (217)
||-++.+ .||| ..|++++ .+|+.+ ++.|++.|+..|.=|.+|.+.-...+
T Consensus 60 I~GKmRk-~IwI~~GD~VlVe~~~yd~~KG~Ii~r~~~devk~L~k~g~wP~~f~~~~~~~~ 120 (143)
T 1d7q_A 60 IRGKLRK-KVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTF 120 (143)
T ss_dssp CCSGGGG-SCCCCTTCEEEEECSSSSSSCCEEEEEECTTTHHHHHHHTSSCTTCCCCCCCSS
T ss_pred eccccee-eEEecCCCEEEEeeccCCCCeEEEEEEeCHHHHHHHHHcCCCChHHhhCccccc
Confidence 6777777 7777 4677777 567654 79999999999999999987654444
No 13
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.01 E-value=11 Score=27.81 Aligned_cols=44 Identities=23% Similarity=0.391 Sum_probs=32.1
Q ss_pred cCCceEEecceEEE-ecceEEEec--------Cc---ccChhHHHHHHHcCCceeEE
Q 035720 145 QGMPVRLNKGVVEL-VSDFVVCEE--------GK---PLSPESARILRLLGIKMATF 189 (217)
Q Consensus 145 lgiptki~~G~i~i-~~d~~v~k~--------G~---~i~~~qA~lL~~lgi~p~~~ 189 (217)
.-||.|+.+ .|+| ..|++++.. |+ ..+++|++-|+.-|.=|.+|
T Consensus 42 a~i~GK~Rk-~IwI~~GD~VlVe~~~yd~~~kg~Iv~r~~~~qvk~L~k~g~wP~~F 97 (111)
T 2dgy_A 42 VSMPSKYRK-NIWIKRGDFLIVDPIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAF 97 (111)
T ss_dssp EECCTTCCS-CCCCCSSCEEEEEECSSCSSCCEEEEEECCHHHHHHHHHHTCSCHHH
T ss_pred EEechhhcc-cEEEcCCCEEEEEecccCCcceEEEEEEeCHHHHHHHHHcCCCChHH
Confidence 337888887 7887 468888753 43 34789999999888777655
No 14
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=28.45 E-value=50 Score=20.68 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=21.0
Q ss_pred eeccccccCChhHHHHHHHHHHHHHhc
Q 035720 10 VTLSKTKKKGKEHKEVIVNSIRNAVEN 36 (217)
Q Consensus 10 v~ltk~~kk~~e~K~~~v~~l~e~l~~ 36 (217)
++.+. ...+.|+|.++++.|.+.+.+
T Consensus 3 I~I~~-~grt~eqK~~L~~~it~~~~~ 28 (62)
T 3m20_A 3 LIVYG-PKLDVGKKREFVERLTSVAAE 28 (62)
T ss_dssp EEEEC-SCCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEE-CCCCHHHHHHHHHHHHHHHHH
Confidence 44455 678899999999999998875
No 15
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=26.00 E-value=71 Score=26.58 Aligned_cols=38 Identities=8% Similarity=0.073 Sum_probs=30.8
Q ss_pred HHHhcCCeEEEEEecC--CCcHHHHHHHHHhcCCCeEEEe
Q 035720 32 NAVENYKSIYVFSFEN--MRNLKFKEFREQIKPSRLLWVG 69 (217)
Q Consensus 32 e~l~~y~~v~i~~~~g--l~~~ql~~lR~~lr~~~~~~v~ 69 (217)
+.|++|+.|++.|+.. ++..+++.||+-.++++-+.|.
T Consensus 46 ~~L~~yDvIIl~d~~~~~l~~~~~~~L~~yV~~GGgLi~~ 85 (259)
T 3rht_A 46 ELLAKQDLVILSDYPAERMTAQAIDQLVTMVKAGCGLVML 85 (259)
T ss_dssp HHHHTCSEEEEESCCGGGBCHHHHHHHHHHHHTTCEEEEE
T ss_pred hHHhcCCEEEEcCCccccCCHHHHHHHHHHHHhCCeEEEe
Confidence 5788999999998764 8999999999999865555444
No 16
>2kp6_A Uncharacterized protein; unknown function, structural genomics, PSI-2, protein struct initiative; NMR {Chromobacterium violaceum}
Probab=24.98 E-value=26 Score=24.43 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=16.7
Q ss_pred CCCCCCCCCchHHHHhcCCceE
Q 035720 129 GPLEQFTHEMEPFLRKQGMPVR 150 (217)
Q Consensus 129 G~~~~~~~~~~~~~~~lgiptk 150 (217)
|-+....|++...|.+||+|..
T Consensus 2 ~~M~~~~h~l~~LF~QLGL~s~ 23 (82)
T 2kp6_A 2 GHMDTSNHLLPGLFRQLGLEDE 23 (82)
T ss_dssp --CCTTCTHHHHHHHHHTSCCC
T ss_pred CCccCCCCCHHHHHHHhCCCCC
Confidence 4455677899999999999853
No 17
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A*
Probab=24.15 E-value=1.4e+02 Score=25.67 Aligned_cols=51 Identities=6% Similarity=0.195 Sum_probs=37.3
Q ss_pred eeccccccCChhHHHHHHHHHHHHHhcCCeEEEEEecCCCcHHHHHHHHHhc
Q 035720 10 VTLSKTKKKGKEHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIK 61 (217)
Q Consensus 10 v~ltk~~kk~~e~K~~~v~~l~e~l~~y~~v~i~~~~gl~~~ql~~lR~~lr 61 (217)
+.|+.-.....+.+.+++++|.+++.++-+++|++ +|++...++++....+
T Consensus 50 IDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~v~n-HGi~~~l~~~~~~~~~ 100 (356)
T 1gp6_A 50 IDLKNIESDDEKIRENCIEELKKASLDWGVMHLIN-HGIPADLMERVKKAGE 100 (356)
T ss_dssp EECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEES-CSCCHHHHHHHHHHHH
T ss_pred EEchhccCCChHHHHHHHHHHHHHHHhCCEEEEeC-CCCCHHHHHHHHHHHH
Confidence 44444322234557789999999999999888875 8899888887766554
No 18
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=24.08 E-value=68 Score=19.48 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=21.0
Q ss_pred eeccccccCChhHHHHHHHHHHHHHhc
Q 035720 10 VTLSKTKKKGKEHKEVIVNSIRNAVEN 36 (217)
Q Consensus 10 v~ltk~~kk~~e~K~~~v~~l~e~l~~ 36 (217)
++++....++.++|.++.+.|.+.+.+
T Consensus 3 i~i~~~~grs~eqk~~l~~~i~~~l~~ 29 (61)
T 2opa_A 3 VTVKMLEGRTDEQKRNLVEKVTEAVKE 29 (61)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 344444556899999999999999875
No 19
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=22.05 E-value=79 Score=19.19 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=20.9
Q ss_pred eeccccccCChhHHHHHHHHHHHHHhc
Q 035720 10 VTLSKTKKKGKEHKEVIVNSIRNAVEN 36 (217)
Q Consensus 10 v~ltk~~kk~~e~K~~~v~~l~e~l~~ 36 (217)
++++.....+.++|.++.+.|.+.+.+
T Consensus 3 i~I~~~~grs~e~k~~l~~~i~~~l~~ 29 (62)
T 1otf_A 3 AQLYIIEGRTDEQKETLIRQVSEAMAN 29 (62)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 344444556899999999999999875
Done!