BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035721
(308 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 117/277 (42%), Gaps = 14/277 (5%)
Query: 35 YITNSRGLRLFTQWWTPLPPAKTLGVLCVVHGFTGESSWIVQLTAVLFAKSGFATCAIDH 94
++ N+ G LF ++W P K L + V HG GE S + A + A DH
Sbjct: 21 HLVNADGQYLFCRYWAPTGTPKAL--IFVSHG-AGEHSGRYEELARMLMGLDLLVFAHDH 77
Query: 95 QGHGFSDGLVAHIPDLNPVVEDAISFFDSFRARHAPDLPAFLYSESLGGAIALYITLRQK 154
GHG S+G + D + V D + DS + + P LP FL S+GGAIA+ +
Sbjct: 78 VGHGQSEGERMVVSDFHVFVRDVLQHVDSMQKDY-PGLPVFLLGHSMGGAIAILTAAERP 136
Query: 155 GAWDGLILNGAMCGISQKFKPPWPLEHLLFTVAWLVPTWRVVPTRGSLPM---VSFKEEW 211
G + G++L + + P F V V+P S P+ V + +
Sbjct: 137 GHFAGMVLISPLVLAN-------PESATTFKVLAAKVLNSVLPNLSSGPIDSSVLSRNKT 189
Query: 212 KRKLALSSXXXXXXXXXXXXXLELLRVSRDLQGRFEEVEVPMLICHGGDDVVCDPACVEE 271
+ + S ++LL ++ ++ VP L+ G D +CD
Sbjct: 190 EVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAYL 249
Query: 272 LYKRAASKDKTLSIYPGMWHQLIGEPEENVELVFGEM 308
L + A S+DKTL IY G +H L E E VF E+
Sbjct: 250 LMELAKSQDKTLKIYEGAYHVLHKELPEVTNSVFHEI 286
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 87.4 bits (215), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 119/275 (43%), Gaps = 10/275 (3%)
Query: 35 YITNSRGLRLFTQWWTPLPPAKTLGVLCVVHGFTGESSWIVQLTAVLFAKSGFATCAIDH 94
++ N+ G LF ++W P K L + V HG GE S + A + A DH
Sbjct: 38 HLVNADGQYLFCRYWKPTGTPKAL--IFVSHG-AGEHSGRYEELARMLMGLDLLVFAHDH 94
Query: 95 QGHGFSDGLVAHIPDLNPVVEDAISFFDSFRARHAPDLPAFLYSESLGGAIALYITLRQK 154
GHG S+G + D + V D + DS + + P LP FL S+GGAIA+ +
Sbjct: 95 VGHGQSEGERMVVSDFHVFVRDVLQHVDSMQKDY-PGLPVFLLGHSMGGAIAILTAAERP 153
Query: 155 GAWDGLILNGAMCGISQKFKPPWPLEHLLFTVAWLV-PTWRVVPTRGSLPMVSFKEEWKR 213
G + G++L + + + + + L V LV P + P S V + + +
Sbjct: 154 GHFAGMVLISPLVLANPESATTFKV--LAAKVLNLVLPNLSLGPIDSS---VLSRNKTEV 208
Query: 214 KLALSSXXXXXXXXXXXXXLELLRVSRDLQGRFEEVEVPMLICHGGDDVVCDPACVEELY 273
+ S ++LL ++ ++ VP L+ G D +CD L
Sbjct: 209 DIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAYLLM 268
Query: 274 KRAASKDKTLSIYPGMWHQLIGEPEENVELVFGEM 308
+ A S+DKTL IY G +H L E E VF E+
Sbjct: 269 ELAKSQDKTLKIYEGAYHVLHKELPEVTNSVFHEI 303
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 87.4 bits (215), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 119/275 (43%), Gaps = 10/275 (3%)
Query: 35 YITNSRGLRLFTQWWTPLPPAKTLGVLCVVHGFTGESSWIVQLTAVLFAKSGFATCAIDH 94
++ N+ G LF ++W P K L + V HG GE S + A + A DH
Sbjct: 39 HLVNADGQYLFCRYWKPTGTPKAL--IFVSHG-AGEHSGRYEELARMLMGLDLLVFAHDH 95
Query: 95 QGHGFSDGLVAHIPDLNPVVEDAISFFDSFRARHAPDLPAFLYSESLGGAIALYITLRQK 154
GHG S+G + D + V D + DS + + P LP FL S+GGAIA+ +
Sbjct: 96 VGHGQSEGERMVVSDFHVFVRDVLQHVDSMQKDY-PGLPVFLLGHSMGGAIAILTAAERP 154
Query: 155 GAWDGLILNGAMCGISQKFKPPWPLEHLLFTVAWLV-PTWRVVPTRGSLPMVSFKEEWKR 213
G + G++L + + + + + L V LV P + P S V + + +
Sbjct: 155 GHFAGMVLISPLVLANPESATTFKV--LAAKVLNLVLPNLSLGPIDSS---VLSRNKTEV 209
Query: 214 KLALSSXXXXXXXXXXXXXLELLRVSRDLQGRFEEVEVPMLICHGGDDVVCDPACVEELY 273
+ S ++LL ++ ++ VP L+ G D +CD L
Sbjct: 210 DIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAYLLM 269
Query: 274 KRAASKDKTLSIYPGMWHQLIGEPEENVELVFGEM 308
+ A S+DKTL IY G +H L E E VF E+
Sbjct: 270 ELAKSQDKTLKIYEGAYHVLHKELPEVTNSVFHEI 304
>pdb|3JW8|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase
pdb|3JW8|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase
Length = 320
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 116/275 (42%), Gaps = 10/275 (3%)
Query: 35 YITNSRGLRLFTQWWTPLPPAKTLGVLCVVHGFTGESSWIVQLTAVLFAKSGFATCAIDH 94
++ N+ G LF ++W P K L + V HG GE S + A A DH
Sbjct: 38 HLVNADGQYLFCRYWKPTGTPKAL--IFVSHG-AGEHSGRYEELARXLXGLDLLVFAHDH 94
Query: 95 QGHGFSDGLVAHIPDLNPVVEDAISFFDSFRARHAPDLPAFLYSESLGGAIALYITLRQK 154
GHG S+G + D + V D + DS + + P LP FL S GGAIA+ +
Sbjct: 95 VGHGQSEGERXVVSDFHVFVRDVLQHVDSXQKDY-PGLPVFLLGHSXGGAIAILTAAERP 153
Query: 155 GAWDGLILNGAMCGISQKFKPPWPLEHLLFTVAWLV-PTWRVVPTRGSLPMVSFKEEWKR 213
G + G +L + + + + + L V LV P + P S V + + +
Sbjct: 154 GHFAGXVLISPLVLANPESATTFKV--LAAKVLNLVLPNLSLGPIDSS---VLSRNKTEV 208
Query: 214 KLALSSXXXXXXXXXXXXXLELLRVSRDLQGRFEEVEVPMLICHGGDDVVCDPACVEELY 273
+ S ++LL ++ ++ VP L+ G D +CD L
Sbjct: 209 DIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAYLLX 268
Query: 274 KRAASKDKTLSIYPGMWHQLIGEPEENVELVFGEM 308
+ A S+DKTL IY G +H L E E VF E+
Sbjct: 269 ELAKSQDKTLKIYEGAYHVLHKELPEVTNSVFHEI 303
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 13/76 (17%)
Query: 27 HSVSHSSEYITNSRGLRLFTQWWTPLPPAKTLGVLCVVHGFTGES--SWIVQLTAVLFAK 84
+ VSH Y+T G+RL P LC+ HGF ES SW Q+ A+ A+
Sbjct: 233 NDVSHG--YVTVKPGIRLHFVEMGSGP------ALCLCHGFP-ESWFSWRYQIPAL--AQ 281
Query: 85 SGFATCAIDHQGHGFS 100
+GF AID +G+G S
Sbjct: 282 AGFRVLAIDMKGYGDS 297
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 7/108 (6%)
Query: 41 GLRLFTQWWTPLPPAKTLGVLCVVHGFTGE-SSWIVQLTAVLFAKSGFATCAIDHQGHGF 99
GL+L P + + + HGFT ++ +++ A A+ D GHG
Sbjct: 31 GLQLVGTREEPFGEIYDMAI--IFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGD 88
Query: 100 SDGLVAHIPDLNPVVEDAISFFDSFRAR-HAPDLPAFLYSESLGGAIA 146
SDG ++ LN +EDA + + + H ++ +L S GG +A
Sbjct: 89 SDGKFENMTVLNE-IEDANAILNYVKTDPHVRNI--YLVGHSQGGVVA 133
>pdb|4DGQ|A Chain A, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|B Chain B, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|C Chain C, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
Length = 280
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 55/274 (20%), Positives = 91/274 (33%), Gaps = 35/274 (12%)
Query: 36 ITNSRGLRLFTQWWTPLPPAKTLGVLCVVHGF-TGESSWIVQLTAVLFAKSGFATCAIDH 94
+T G+ +F + W P + V+ HG+ W QL + F GF A D
Sbjct: 8 VTTKDGVEIFYKDWGP----RDAKVIHFHHGWPLSSDDWDAQL--LFFVNKGFRVVAHDR 61
Query: 95 QGHGFSDGLVAHIPDLNPVVEDAISFFDSFRARHAPDLPAFLYSESLGGAIALYITLRQK 154
+GHG S V D++ +DA + + A + + GG + YI +
Sbjct: 62 RGHGRSS-QVWDGHDMDHYADDAAAVVEKLGTHGA----MHVGHSTGGGEVVRYIARHGE 116
Query: 155 GAWDGLIL---------------NGAMCGISQKFKPPWPLEHLLFTVAWLVPTWRVVPTR 199
+L NG + F+ F + +
Sbjct: 117 RNVSKAVLISSVPPLMVKTSSNPNGTPKSVFDDFQAHVAANRAQFYLDVPAGPFYGYNRP 176
Query: 200 GSLPMVSFKEEWKRKLALSSXXXXXXXXXXXXXLELLRVSRDLQGRFEEVEVPMLICHGG 259
G+ P W R+ + S + + DL+G + +P+L+ HG
Sbjct: 177 GAKPSEGVIYNWWRQGMMGSTKAQYDGIVAFSQTDF---TNDLKG----ITIPVLVIHGD 229
Query: 260 DDVVCDPACVEELYKRAASKDKTLSIYPGMWHQL 293
DD V P + K+ L Y G H +
Sbjct: 230 DDQVV-PYADSGVLSAKLVKNGKLITYKGAPHGI 262
>pdb|2WTM|A Chain A, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|B Chain B, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|C Chain C, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|D Chain D, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTN|A Chain A, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
pdb|2WTN|B Chain B, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
Length = 251
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 38 NSRGLRLFTQWWTPLPPAKTLGVLCVVHGFTG--ESSWIVQLTAVLFAKSGFATCAIDHQ 95
+ G++L P + + ++HGFTG E IV + L + G AT D
Sbjct: 7 DCDGIKLNAYLDMPKNNPEKCPLCIIIHGFTGHSEERHIVAVQETL-NEIGVATLRADMY 65
Query: 96 GHGFSDG 102
GHG SDG
Sbjct: 66 GHGKSDG 72
>pdb|3QM1|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate, Form Ii
Length = 265
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 7/108 (6%)
Query: 41 GLRLFTQWWTPLPPAKTLGVLCVVHGFTGE-SSWIVQLTAVLFAKSGFATCAIDHQGHGF 99
GL+L P + + + HGFT ++ +++ A A+ D GHG
Sbjct: 31 GLQLVGTREEPFGEIYDMAI--IFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGD 88
Query: 100 SDGLVAHIPDLNPVVEDAISFFDSFRAR-HAPDLPAFLYSESLGGAIA 146
SDG ++ LN +EDA + + + H ++ +L + GG +A
Sbjct: 89 SDGKFENMTVLNE-IEDANAILNYVKTDPHVRNI--YLVGHAQGGVVA 133
>pdb|3PF9|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant
pdb|3PFB|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFB|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFC|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Ferulic
Acid
pdb|3S2Z|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
pdb|3S2Z|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
Length = 270
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 7/108 (6%)
Query: 41 GLRLFTQWWTPLPPAKTLGVLCVVHGFTGE-SSWIVQLTAVLFAKSGFATCAIDHQGHGF 99
GL+L P + + + HGFT ++ +++ A A+ D GHG
Sbjct: 31 GLQLVGTREEPFGEIYDMAI--IFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGD 88
Query: 100 SDGLVAHIPDLNPVVEDAISFFDSFRAR-HAPDLPAFLYSESLGGAIA 146
SDG ++ LN +EDA + + + H ++ +L + GG +A
Sbjct: 89 SDGKFENMTVLNE-IEDANAILNYVKTDPHVRNI--YLVGHAQGGVVA 133
>pdb|1XQV|A Chain A, Crystal Structure Of Inactive F1-Mutant G37a
Length = 293
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 9/111 (8%)
Query: 61 LCVVHGFTGES-SWIVQLTAVLFAKSGFATCAIDHQGHGFSDGLVAHIPDLNPVVED-AI 118
L +HG G S +++ L + K G D G G S+ PD + D +
Sbjct: 31 LMTMHGAPGMSHDYLLSLRDM--TKEGITVLFYDQFGCGRSEE-----PDQSKFTIDYGV 83
Query: 119 SFFDSFRARHAPDLPAFLYSESLGGAIALYITLRQKGAWDGLILNGAMCGI 169
++ R++ + FL S GGA+AL ++ + GLI++G + +
Sbjct: 84 EEAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSV 134
>pdb|1XRL|A Chain A, Crystal Structure Of Active Site F1-Mutant Y205f Complex
With Inhibitor Pck
Length = 293
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 9/111 (8%)
Query: 61 LCVVHGFTGES-SWIVQLTAVLFAKSGFATCAIDHQGHGFSDGLVAHIPDLNPVVED-AI 118
L +HG G S +++ L + K G D G G S+ PD + D +
Sbjct: 31 LMTMHGGPGMSHDYLLSLRDM--TKEGITVLFYDQFGCGRSEE-----PDQSKFTIDYGV 83
Query: 119 SFFDSFRARHAPDLPAFLYSESLGGAIALYITLRQKGAWDGLILNGAMCGI 169
++ R++ + FL S GGA+AL ++ + GLI++G + +
Sbjct: 84 EEAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSV 134
>pdb|1MTZ|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
pdb|1MU0|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
Complex With Pck
Length = 293
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 9/111 (8%)
Query: 61 LCVVHGFTGES-SWIVQLTAVLFAKSGFATCAIDHQGHGFSDGLVAHIPDLNPVVED-AI 118
L +HG G S +++ L + K G D G G S+ PD + D +
Sbjct: 31 LMTMHGGPGMSHDYLLSLRDM--TKEGITVLFYDQFGCGRSEE-----PDQSKFTIDYGV 83
Query: 119 SFFDSFRARHAPDLPAFLYSESLGGAIALYITLRQKGAWDGLILNGAMCGI 169
++ R++ + FL S GGA+AL ++ + GLI++G + +
Sbjct: 84 EEAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSV 134
>pdb|1XRM|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Ala-Phe
pdb|1XRN|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Ala
pdb|1XRO|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Leu
pdb|1XRP|A Chain A, Crystal Structure Of Active Site F1-mutant E213q Soaked
With Peptide Pro-leu-gly-gly
Length = 293
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 9/111 (8%)
Query: 61 LCVVHGFTGES-SWIVQLTAVLFAKSGFATCAIDHQGHGFSDGLVAHIPDLNPVVED-AI 118
L +HG G S +++ L + K G D G G S+ PD + D +
Sbjct: 31 LMTMHGGPGMSHDYLLSLRDM--TKEGITVLFYDQFGCGRSEE-----PDQSKFTIDYGV 83
Query: 119 SFFDSFRARHAPDLPAFLYSESLGGAIALYITLRQKGAWDGLILNGAMCGI 169
++ R++ + FL S GGA+AL ++ + GLI++G + +
Sbjct: 84 EEAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSV 134
>pdb|1XRQ|A Chain A, Crystal Structure Of Active Site F1-Mutant E245q Soaked
With Peptide Phe-Leu
pdb|1XRR|A Chain A, Crystal Structure Of Active Site F1-mutant E245q Soaked
With Peptide Pro-pro
Length = 293
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 9/111 (8%)
Query: 61 LCVVHGFTGES-SWIVQLTAVLFAKSGFATCAIDHQGHGFSDGLVAHIPDLNPVVED-AI 118
L +HG G S +++ L + K G D G G S+ PD + D +
Sbjct: 31 LMTMHGGPGMSHDYLLSLRDM--TKEGITVLFYDQFGCGRSEE-----PDQSKFTIDYGV 83
Query: 119 SFFDSFRARHAPDLPAFLYSESLGGAIALYITLRQKGAWDGLILNGAMCGI 169
++ R++ + FL S GGA+AL ++ + GLI++G + +
Sbjct: 84 EEAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSV 134
>pdb|2PV4|A Chain A, Crystal Structure Of An Uncharacterized Protein From
Duf3069 Family (Sama_2622) From Shewanella Amazonensis
Sb2b At 1.95 A Resolution
Length = 145
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 45 FTQWWTPLP-PAKTLGVLCVVHGFTGESSWIVQLTAV 80
FT+ W LP A +L CV HGF ++WI QL+ V
Sbjct: 53 FTRAWDQLPDSASSLFERCVFHGFYLANAWI-QLSIV 88
>pdb|1A8S|A Chain A, Chloroperoxidase FPROPIONATE COMPLEX
Length = 273
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 241 DLQGRFEEVEVPMLICHGGDDVVCDPACVEELYKRAASKDKTLSIYPGMWHQLIGEPEEN 300
D ++++VP L+ HG D V P + A K TL IY G H L ++
Sbjct: 204 DFTEDLKKIDVPTLVVHGDADQVV-PIEASGIASAALVKGSTLKIYSGAPHGLTDTHKDQ 262
Query: 301 VE 302
+
Sbjct: 263 LN 264
>pdb|3FCY|A Chain A, Crystal Structure Of Acetyl Xylan Esterase 1 From
Thermoanaerobacterium Sp. JwSL YS485
pdb|3FCY|B Chain B, Crystal Structure Of Acetyl Xylan Esterase 1 From
Thermoanaerobacterium Sp. JwSL YS485
pdb|3FCY|C Chain C, Crystal Structure Of Acetyl Xylan Esterase 1 From
Thermoanaerobacterium Sp. JwSL YS485
Length = 346
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 241 DLQGRFEEVEVPMLICHGGDDVVCDPACVEELYKRAASKDKTLSIYPGMWHQ 292
D++ + ++ +L+C G D VC P+ V Y SK K + +YP H+
Sbjct: 278 DVKNLAKRIKGDVLMCVGLMDQVCPPSTVFAAYNNIQSK-KDIKVYPDYGHE 328
>pdb|1A88|A Chain A, Chloroperoxidase L
pdb|1A88|B Chain B, Chloroperoxidase L
pdb|1A88|C Chain C, Chloroperoxidase L
Length = 275
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 97/278 (34%), Gaps = 41/278 (14%)
Query: 36 ITNSRGLRLFTQWWTP---LPPAKTLGVLCVVHGF-TGESSWIVQLTAVLFAKSGFATCA 91
+T S G +F + W P LP + HG+ W Q+ + F G+ A
Sbjct: 3 VTTSDGTNIFYKDWGPRDGLP-------VVFHHGWPLSADDWDNQM--LFFLSHGYRVIA 53
Query: 92 IDHQGHGFSDG-LVAHIPDLNPVVEDAISFFDSFRARHAPDLPAFLYSESLGGAIALYIT 150
D +GHG SD H D++ D + ++ R A + + GG +A Y+
Sbjct: 54 HDRRGHGRSDQPSTGH--DMDTYAADVAALTEALDLRGA----VHIGHSTGGGEVARYVA 107
Query: 151 LRQKGAWDGLILNGAMCGI---SQKFKPPWPLEHL-LFTVAWLVPTWRVVPTRGSLPMVS 206
+ G +L A+ + S PLE F A + S P
Sbjct: 108 RAEPGRVAKAVLVSAVPPVMVKSDTNPDGLPLEVFDEFRAALAANRAQFYIDVPSGPFYG 167
Query: 207 FKEEWK--RKLALSSXXXXXXXXXXXXXLELLRV--SRDLQGRFEEVEVPMLICHGGDDV 262
F E + + E + D + ++VP+L+ HG DD
Sbjct: 168 FNREGATVSQGLIDHWWLQGMMGAANAHYECIAAFSETDFTDDLKRIDVPVLVAHGTDDQ 227
Query: 263 VCDPACVEELYKRAASK------DKTLSIYPGMWHQLI 294
V Y AA K + TL Y G+ H ++
Sbjct: 228 VVP-------YADAAPKSAELLANATLKSYEGLPHGML 258
>pdb|1XQW|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Phe-Leu
pdb|1XQX|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pck
pdb|1XQY|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pro-Leu-
Gly-Gly
Length = 293
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 9/111 (8%)
Query: 61 LCVVHGFTGES-SWIVQLTAVLFAKSGFATCAIDHQGHGFSDGLVAHIPDLNPVVED-AI 118
L +HG G S +++ L + K G D G G S+ PD + D +
Sbjct: 31 LMTMHGGPGMSHDYLLSLRDM--TKEGITVLFYDQFGCGRSEE-----PDQSKFTIDYGV 83
Query: 119 SFFDSFRARHAPDLPAFLYSESLGGAIALYITLRQKGAWDGLILNGAMCGI 169
++ R++ + FL + GGA+AL ++ + GLI++G + +
Sbjct: 84 EEAEALRSKLFGNEKVFLMGSAYGGALALAYAVKYQDHLKGLIVSGGLSSV 134
>pdb|1MT3|A Chain A, Crystal Structure Of The Tricorn Interacting Factor
Selenomethionine-f1
Length = 293
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 9/111 (8%)
Query: 61 LCVVHGFTGES-SWIVQLTAVLFAKSGFATCAIDHQGHGFSDGLVAHIPDLNPVVED-AI 118
L HG G S +++ L K G D G G S+ PD + D +
Sbjct: 31 LXTXHGGPGXSHDYLLSLRDX--TKEGITVLFYDQFGCGRSEE-----PDQSKFTIDYGV 83
Query: 119 SFFDSFRARHAPDLPAFLYSESLGGAIALYITLRQKGAWDGLILNGAMCGI 169
++ R++ + FL S GGA+AL ++ + GLI++G + +
Sbjct: 84 EEAEALRSKLFGNEKVFLXGSSYGGALALAYAVKYQDHLKGLIVSGGLSSV 134
>pdb|3RM3|A Chain A, Crystal Structure Of Monoacylglycerol Lipase From
Bacillus Sp. H257
pdb|3RLI|A Chain A, Crystal Structure Of Monoacylglycerol Lipase From
Bacillus Sp. H257 In Complex With Pmsf
Length = 270
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 58 LGVLCVVHGFTGESSWIVQLTAVLFAKSGFATCAIDHQGHG 98
+GVL +VHGFTG + L A +AK+G+ C +GHG
Sbjct: 41 VGVL-LVHGFTGTPHSMRPL-AEAYAKAGYTVCLPRLKGHG 79
>pdb|2XMZ|A Chain A, Structure Of Menh From S. Aureus
Length = 269
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 15/122 (12%)
Query: 55 AKTLGVLCVVHGFTGES----SWIVQLTAVLFAKSGFATCAIDHQGHGFSDGLVAHIPDL 110
+T VL +HGF +S + I + T + ID GHG + +
Sbjct: 13 VETNQVLVFLHGFLSDSRTYHNHIEKFT------DNYHVITIDLPGHGEDQSSMDETWNF 66
Query: 111 NPVVEDAISFFDSFRARHAPDLPAFLYSESLGGAIALYITLRQKGAWDGLILNGAMCGIS 170
+ + D ++ D L+ S+GG +ALY + LIL GI
Sbjct: 67 DYITTLLDRILDKYK-----DKSITLFGYSMGGRVALYYAINGHIPISNLILESTSPGIK 121
Query: 171 QK 172
++
Sbjct: 122 EE 123
>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
Length = 311
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 52/144 (36%), Gaps = 13/144 (9%)
Query: 60 VLCVVHGFTGESSWIVQLTAVLFAKSGFATCAIDHQGHGFSDGLVAHIPDLNPVVEDAI- 118
V+ + G G +SW + F A+D G+G SD H N A+
Sbjct: 59 VVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDKRAEH-GQFNRYAAMALK 117
Query: 119 SFFDSFRARHAPDLPAFLYSESLGGAIALYITLRQKGAWDGLILNGAMCGISQKFKPPWP 178
FD P L SLGG A+ L L+L G G+S P P
Sbjct: 118 GLFDQLGLGRVP-----LVGNSLGGGTAVRFALDYPARAGRLVLMGP-GGLSINLFAPDP 171
Query: 179 LEHLLFTVAWLVPTWRVVPTRGSL 202
E + + + V PTR +L
Sbjct: 172 TEGV-----KRLSKFSVAPTRENL 190
>pdb|3KXP|A Chain A, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|B Chain B, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|C Chain C, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|D Chain D, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|E Chain E, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|F Chain F, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|G Chain G, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|H Chain H, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|I Chain I, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|J Chain J, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|K Chain K, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|L Chain L, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
Length = 314
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 65 HGFTGESSWIVQLTAVLFAKSGFATCAIDHQGHGFSD 101
HG T S+ L L + F T A+D +GHG SD
Sbjct: 75 HGITSNSAVFEPLXIRLSDR--FTTIAVDQRGHGLSD 109
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 116 DAISFFDSFRARHAPDLPAFLYSESLGGAIALYITLRQKGAWDGLIL 162
D +++ R +H P ++ + A+A I +++KGAW +L
Sbjct: 11 DGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLL 57
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 116 DAISFFDSFRARHAPDLPAFLYSESLGGAIALYITLRQKGAWDGLIL 162
D +++ R +H P ++ + A+A I +++KGAW +L
Sbjct: 46 DGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLL 92
>pdb|2WUD|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUD|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUE|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUE|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUF|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUF|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUG|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
pdb|2WUG|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
Length = 291
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 52/144 (36%), Gaps = 13/144 (9%)
Query: 60 VLCVVHGFTGESSWIVQLTAVLFAKSGFATCAIDHQGHGFSDGLVAHIPDLNPVVEDAI- 118
V+ + G G +SW + F A+D G+G SD H N A+
Sbjct: 39 VVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDKRAEH-GQFNRYAAMALK 97
Query: 119 SFFDSFRARHAPDLPAFLYSESLGGAIALYITLRQKGAWDGLILNGAMCGISQKFKPPWP 178
FD P L +LGG A+ L L+L G G+S P P
Sbjct: 98 GLFDQLGLGRVP-----LVGNALGGGTAVRFALDYPARAGRLVLMGP-GGLSINLFAPDP 151
Query: 179 LEHLLFTVAWLVPTWRVVPTRGSL 202
E + + + V PTR +L
Sbjct: 152 TEGV-----KRLSKFSVAPTRENL 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,487,839
Number of Sequences: 62578
Number of extensions: 376840
Number of successful extensions: 860
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 842
Number of HSP's gapped (non-prelim): 36
length of query: 308
length of database: 14,973,337
effective HSP length: 99
effective length of query: 209
effective length of database: 8,778,115
effective search space: 1834626035
effective search space used: 1834626035
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)