Your job contains 1 sequence.
>035722
MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD
NVRPSRRYNTDVPLARLKIH
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 035722
(80 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2049816 - symbol:AT2G37510 species:3702 "Arabi... 173 3.4e-13 1
TAIR|locus:2039590 - symbol:AT2G27330 species:3702 "Arabi... 172 4.4e-13 1
TAIR|locus:2160752 - symbol:AT5G06210 species:3702 "Arabi... 171 5.6e-13 1
TAIR|locus:2206850 - symbol:AT1G73530 species:3702 "Arabi... 153 4.5e-11 1
TAIR|locus:2077137 - symbol:AT3G46020 species:3702 "Arabi... 146 2.5e-10 1
TAIR|locus:2172144 - symbol:AT5G54580 species:3702 "Arabi... 142 6.6e-10 1
ZFIN|ZDB-GENE-030131-5841 - symbol:cirbp "cold inducible ... 142 6.6e-10 1
TAIR|locus:2076096 - symbol:GRP4 "glycine-rich RNA-bindin... 141 8.4e-10 1
TAIR|locus:2179624 - symbol:AT5G19030 species:3702 "Arabi... 139 1.4e-09 1
UNIPROTKB|Q60A61 - symbol:MCA1010 "RNA-binding protein" s... 138 1.8e-09 1
TAIR|locus:2136298 - symbol:CCR1 "cold, circadian rhythm,... 137 2.2e-09 1
UNIPROTKB|F6RBQ9 - symbol:F6RBQ9 "Uncharacterized protein... 136 2.9e-09 1
UNIPROTKB|K7ENX8 - symbol:CIRBP "Cold-inducible RNA-bindi... 136 2.9e-09 1
UNIPROTKB|I3L5X7 - symbol:RBM3 "Uncharacterized protein" ... 136 2.9e-09 1
ASPGD|ASPL0000040642 - symbol:AN2989 species:162425 "Emer... 135 3.6e-09 1
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi... 135 3.6e-09 1
MGI|MGI:1099460 - symbol:Rbm3 "RNA binding motif protein ... 135 3.6e-09 1
UNIPROTKB|G3V6P6 - symbol:Rbm3 "Putative RNA-binding prot... 135 3.6e-09 1
UNIPROTKB|H0YB86 - symbol:PABPC1 "Polyadenylate-binding p... 134 4.7e-09 1
UNIPROTKB|P98179 - symbol:RBM3 "Putative RNA-binding prot... 134 4.7e-09 1
ZFIN|ZDB-GENE-050417-329 - symbol:zgc:112425 "zgc:112425"... 134 4.7e-09 1
TAIR|locus:2079276 - symbol:ATRZ-1A species:3702 "Arabido... 136 5.1e-09 1
UNIPROTKB|H0YEU6 - symbol:PABPC4 "Polyadenylate-binding p... 136 5.5e-09 1
UNIPROTKB|Q9DED4 - symbol:cirbp-b "Cold-inducible RNA-bin... 132 7.6e-09 1
TAIR|locus:2119495 - symbol:GR-RBP2 "AT4G13850" species:3... 132 7.6e-09 1
RGD|620145 - symbol:Rbm3 "RNA binding motif (RNP1, RRM) p... 131 9.7e-09 1
TAIR|locus:2088756 - symbol:AT3G20930 species:3702 "Arabi... 138 9.8e-09 1
UNIPROTKB|H0YBQ4 - symbol:PABPC1 "Polyadenylate-binding p... 134 1.1e-08 1
UNIPROTKB|H0YAR2 - symbol:PABPC1 "Polyadenylate-binding p... 134 1.4e-08 1
UNIPROTKB|H9KZV5 - symbol:CIRBP "Uncharacterized protein"... 129 1.6e-08 1
UNIPROTKB|H9L0U4 - symbol:CIRBP "Uncharacterized protein"... 129 1.6e-08 1
UNIPROTKB|H9L3B3 - symbol:CIRBP "Uncharacterized protein"... 129 1.6e-08 1
UNIPROTKB|E2R6G2 - symbol:CIRBP "Uncharacterized protein"... 129 1.6e-08 1
UNIPROTKB|E2R771 - symbol:RBM3 "Uncharacterized protein" ... 129 1.6e-08 1
UNIPROTKB|F6XHA7 - symbol:CIRBP "Uncharacterized protein"... 129 1.6e-08 1
UNIPROTKB|K7EJV5 - symbol:CIRBP "Cold-inducible RNA-bindi... 129 1.6e-08 1
UNIPROTKB|K7EMY9 - symbol:CIRBP "Cold-inducible RNA-bindi... 129 1.6e-08 1
UNIPROTKB|K7EPM4 - symbol:CIRBP "Cold-inducible RNA-bindi... 129 1.6e-08 1
UNIPROTKB|K7EQR7 - symbol:CIRBP "Cold-inducible RNA-bindi... 129 1.6e-08 1
UNIPROTKB|K7ER40 - symbol:CIRBP "Cold-inducible RNA-bindi... 129 1.6e-08 1
UNIPROTKB|Q14011 - symbol:CIRBP "Cold-inducible RNA-bindi... 129 1.6e-08 1
UNIPROTKB|F1S6R1 - symbol:CIRBP "Uncharacterized protein"... 129 1.6e-08 1
UNIPROTKB|P60826 - symbol:CIRBP "Cold-inducible RNA-bindi... 129 1.6e-08 1
UNIPROTKB|Q43472 - symbol:blt801 "Glycine-rich RNA-bindin... 129 1.6e-08 1
UNIPROTKB|Q5RF83 - symbol:CIRBP "Cold-inducible RNA-bindi... 129 1.6e-08 1
UNIPROTKB|Q9PTX2 - symbol:cirbp "Cold-inducible RNA-bindi... 129 1.6e-08 1
MGI|MGI:893588 - symbol:Cirbp "cold inducible RNA binding... 129 1.6e-08 1
RGD|620756 - symbol:Cirbp "cold inducible RNA binding pro... 129 1.6e-08 1
UNIPROTKB|H3BPI5 - symbol:PABPC3 "Polyadenylate-binding p... 132 1.7e-08 1
UNIPROTKB|Q3SZN4 - symbol:CIRBP "Uncharacterized protein"... 129 1.8e-08 1
RGD|1305015 - symbol:Pabpc4 "poly(A) binding protein, cyt... 136 2.0e-08 1
UNIPROTKB|F1SDR6 - symbol:PABPC1L "Uncharacterized protei... 138 2.2e-08 1
UNIPROTKB|Q9H361 - symbol:PABPC3 "Polyadenylate-binding p... 138 2.3e-08 1
ZFIN|ZDB-GENE-050308-1 - symbol:pabpc1b "poly A binding p... 138 2.3e-08 1
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 138 2.4e-08 1
UNIPROTKB|H0YCC8 - symbol:PABPC4 "Polyadenylate-binding p... 127 2.6e-08 1
UNIPROTKB|O93235 - symbol:cirbp-a "Cold-inducible RNA-bin... 127 2.6e-08 1
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 137 3.1e-08 1
UNIPROTKB|H0Y5F5 - symbol:PABPC4 "Polyadenylate-binding p... 136 3.1e-08 1
DICTYBASE|DDB_G0293558 - symbol:pabpc1A "polyadenylate bi... 136 3.3e-08 1
UNIPROTKB|H0YAP2 - symbol:PABPC1 "Polyadenylate-binding p... 126 3.3e-08 1
UNIPROTKB|G4MY43 - symbol:MGG_01268 "Nuclear localization... 135 3.3e-08 1
UNIPROTKB|D4AC21 - symbol:Pabpc4 "Protein Pabpc4" species... 136 3.5e-08 1
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 136 3.7e-08 1
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein... 136 3.8e-08 1
UNIPROTKB|H3BNY3 - symbol:PABPC3 "Polyadenylate-binding p... 132 3.8e-08 1
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 136 3.8e-08 1
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 136 3.8e-08 1
UNIPROTKB|D4AC14 - symbol:Pabpc4 "Protein Pabpc4" species... 136 3.8e-08 1
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p... 136 3.9e-08 1
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein... 136 3.9e-08 1
WB|WBGene00003902 - symbol:pab-1 species:6239 "Caenorhabd... 136 4.0e-08 1
UNIPROTKB|F1NH82 - symbol:F1NH82 "Uncharacterized protein... 134 4.0e-08 1
UNIPROTKB|G3V9N0 - symbol:Pabpc4 "RCG31475, isoform CRA_a... 136 4.1e-08 1
UNIPROTKB|E2R228 - symbol:E2R228 "Uncharacterized protein... 125 4.2e-08 1
UNIPROTKB|E2R9I1 - symbol:PABPC4 "Uncharacterized protein... 136 4.4e-08 1
GENEDB_PFALCIPARUM|PFL1170w - symbol:PFL1170w "polyadenyl... 137 4.6e-08 1
UNIPROTKB|Q8I5H4 - symbol:PFL1170w "Polyadenylate-binding... 137 4.6e-08 1
CGD|CAL0001392 - symbol:orf19.3037 species:5476 "Candida ... 135 4.9e-08 1
UNIPROTKB|B4E2X2 - symbol:CIRBP "Cold-inducible RNA-bindi... 128 5.4e-08 1
UNIPROTKB|F1NH81 - symbol:PABPC1 "Uncharacterized protein... 134 5.5e-08 1
UNIPROTKB|E7EQV3 - symbol:PABPC1 "Polyadenylate-binding p... 134 5.7e-08 1
UNIPROTKB|D6W5Y5 - symbol:CIRBP "Cold-inducible RNA-bindi... 129 5.8e-08 1
UNIPROTKB|E7ERJ7 - symbol:PABPC1 "Polyadenylate-binding p... 134 5.9e-08 1
ZFIN|ZDB-GENE-030131-3238 - symbol:pabpc1a "poly A bindin... 134 6.3e-08 1
UNIPROTKB|P61286 - symbol:PABPC1 "Polyadenylate-binding p... 134 6.3e-08 1
UNIPROTKB|J9P326 - symbol:PABPC1 "Uncharacterized protein... 134 6.3e-08 1
UNIPROTKB|P11940 - symbol:PABPC1 "Polyadenylate-binding p... 134 6.3e-08 1
UNIPROTKB|F2Z557 - symbol:PABPC1 "Uncharacterized protein... 134 6.3e-08 1
UNIPROTKB|Q5R8F7 - symbol:PABPC1 "Polyadenylate-binding p... 134 6.3e-08 1
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 134 6.3e-08 1
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto... 134 6.3e-08 1
UNIPROTKB|I3LS00 - symbol:PABPC1 "Uncharacterized protein... 134 6.5e-08 1
UNIPROTKB|I3LQ36 - symbol:I3LQ36 "Uncharacterized protein... 123 6.8e-08 1
TAIR|locus:2168133 - symbol:AT5G59860 species:3702 "Arabi... 123 6.8e-08 1
UNIPROTKB|E2RQC8 - symbol:PABPC1 "Uncharacterized protein... 133 7.4e-08 1
UNIPROTKB|Q5JQF3 - symbol:PABPC5 "Polyadenylate-binding p... 124 7.9e-08 1
UNIPROTKB|Q6GR16 - symbol:epabp-b "Embryonic polyadenylat... 133 8.0e-08 1
UNIPROTKB|E1BWJ7 - symbol:PABPC1L "Uncharacterized protei... 133 8.0e-08 1
UNIPROTKB|Q6IP09 - symbol:pabpc1-b "Polyadenylate-binding... 133 8.1e-08 1
WARNING: Descriptions of 715 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2049816 [details] [associations]
symbol:AT2G37510 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AC005896 GO:GO:0003676 HOGENOM:HOG000276232
HSSP:P11940 EMBL:AY084740 EMBL:BT028941 IPI:IPI00545899 PIR:F84793
RefSeq:NP_181287.1 UniGene:At.37414 ProteinModelPortal:Q8S8L4
SMR:Q8S8L4 PRIDE:Q8S8L4 EnsemblPlants:AT2G37510.1 GeneID:818327
KEGG:ath:AT2G37510 TAIR:At2g37510 eggNOG:NOG305672
InParanoid:Q8S8L4 OMA:NKTIGWC PhylomeDB:Q8S8L4
ProtClustDB:CLSN2683075 ArrayExpress:Q8S8L4 Genevestigator:Q8S8L4
Uniprot:Q8S8L4
Length = 142
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 33/63 (52%), Positives = 44/63 (69%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ DAF+ FGQ+ A +I D+ SKG+G VT++T E+A+KA EMN K LDG V+FVD
Sbjct: 50 LQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDP 109
Query: 62 VRP 64
RP
Sbjct: 110 ARP 112
>TAIR|locus:2039590 [details] [associations]
symbol:AT2G27330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT025704
IPI:IPI00525470 RefSeq:NP_565646.2 UniGene:At.38782
ProteinModelPortal:Q1ECN0 SMR:Q1ECN0 IntAct:Q1ECN0
EnsemblPlants:AT2G27330.1 GeneID:817276 KEGG:ath:AT2G27330
TAIR:At2g27330 eggNOG:NOG290837 InParanoid:Q1ECN0 OMA:IMDKIRC
PhylomeDB:Q1ECN0 ProtClustDB:CLSN2918107 Genevestigator:Q1ECN0
Uniprot:Q1ECN0
Length = 116
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 33/70 (47%), Positives = 49/70 (70%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ AFSQ+GQV K +IMDK + KG+ VTFS++EEA+KAL E+N +L+DGRV+ +D
Sbjct: 37 LTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELNAQLVDGRVVILDT 96
Query: 62 VRPSRRYNTD 71
+ ++ D
Sbjct: 97 TKAAKHNPPD 106
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 35/77 (45%), Positives = 53/77 (68%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+++AFS+ GQV +A I+MD+ + SKG+G VTF++ +EAQKAL E NG+ L+GR +FVD
Sbjct: 50 LSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDY 109
Query: 62 VRPSRRYNTD--VPLAR 76
+ + P+AR
Sbjct: 110 AKAKQSLGGGGGYPIAR 126
>TAIR|locus:2206850 [details] [associations]
symbol:AT1G73530 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09651 EMBL:AC012396
EMBL:BT021981 EMBL:BT028910 IPI:IPI00543837 PIR:A96762
RefSeq:NP_177494.1 UniGene:At.34984 ProteinModelPortal:Q9FX45
SMR:Q9FX45 STRING:Q9FX45 PRIDE:Q9FX45 EnsemblPlants:AT1G73530.1
GeneID:843687 KEGG:ath:AT1G73530 TAIR:At1g73530 eggNOG:NOG302687
HOGENOM:HOG000152583 InParanoid:Q9FX45 OMA:FRTTEDT PhylomeDB:Q9FX45
ProtClustDB:CLSN2914346 Genevestigator:Q9FX45 Uniprot:Q9FX45
Length = 181
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 28/62 (45%), Positives = 40/62 (64%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D F QFG + ++MDK N KG+ + + TEEEA KA+ M+GK LDGRV+FV+
Sbjct: 93 LRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEE 152
Query: 62 VR 63
+
Sbjct: 153 AK 154
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 25/55 (45%), Positives = 41/55 (74%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
FS FGQ+ +A +I D KG+G +TF +E++A+KAL ++GK++DGR++FV+
Sbjct: 27 FSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSLDGKIVDGRLIFVE 81
>TAIR|locus:2172144 [details] [associations]
symbol:AT5G54580 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB016879 HOGENOM:HOG000276232
HSSP:Q61474 UniGene:At.52694 EMBL:AY072101 EMBL:AY096589
EMBL:AY085234 IPI:IPI00521049 RefSeq:NP_200269.1 UniGene:At.20805
ProteinModelPortal:Q9FIU6 SMR:Q9FIU6 IntAct:Q9FIU6 PaxDb:Q9FIU6
PRIDE:Q9FIU6 EnsemblPlants:AT5G54580.1 GeneID:835546
KEGG:ath:AT5G54580 TAIR:At5g54580 eggNOG:NOG324885
InParanoid:Q9FIU6 OMA:IKGMDGK PhylomeDB:Q9FIU6
ProtClustDB:CLSN2696829 ArrayExpress:Q9FIU6 Genevestigator:Q9FIU6
Uniprot:Q9FIU6
Length = 156
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 27/69 (39%), Positives = 43/69 (62%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AF+QFG+V A ++ D+ SKG+G V ++T E++ K + M+GK LDG V+F + RP
Sbjct: 75 AFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYARP 134
Query: 65 SRRYNTDVP 73
+ + P
Sbjct: 135 REQSQSYQP 143
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 26/64 (40%), Positives = 42/64 (65%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS++G + K +I D+ + S+G+G VTF E+A+ A+ MNGK +DGR++ VD
Sbjct: 39 LEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAAMNGKQVDGRMIRVDE 98
Query: 62 VRPS 65
S
Sbjct: 99 AGKS 102
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 27/59 (45%), Positives = 42/59 (71%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ AF+ FG+VT+AT+I D+ S+G+G V+FS E+ A A+ EM+GK L+GR + V+
Sbjct: 51 LKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVN 109
>TAIR|locus:2179624 [details] [associations]
symbol:AT5G19030 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00544212 RefSeq:NP_197404.2
UniGene:At.31343 ProteinModelPortal:F4JZK9 SMR:F4JZK9
EnsemblPlants:AT5G19030.1 GeneID:832022 KEGG:ath:AT5G19030
OMA:RTISCVA PhylomeDB:F4JZK9 Uniprot:F4JZK9
Length = 172
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 31/64 (48%), Positives = 41/64 (64%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP- 64
FS+FGQVT II ++ S GYG V F+++E+AQ A+ MNGK DGR + V +P
Sbjct: 97 FSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGKFFDGRFILVKFGQPG 156
Query: 65 -SRR 67
SRR
Sbjct: 157 LSRR 160
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 25/62 (40%), Positives = 39/62 (62%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
F+ +G V A ++MD+ S+G+G V +++EAQ A+ +NGK +DGR L V+ RP
Sbjct: 23 FAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAGLNGKEMDGRNLMVNEARPP 82
Query: 66 RR 67
R
Sbjct: 83 ER 84
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
FSQFG V + II D+ S+G+G VTF E+ + A+ EMNGK LDGRV+ V+ +
Sbjct: 26 FSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQ 83
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG +++ ++ D+ S+G+G +TF+ E A A+ MNG+ LDGR + VD+
Sbjct: 22 LEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAMNGESLDGRQIRVDH 81
Query: 62 VRPSRR 67
S R
Sbjct: 82 AGKSAR 87
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 25/65 (38%), Positives = 43/65 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ FS++GQ+++ ++ D+ S+G+G VTF ++A+ A+ MNGK +DGR + VD
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 81
Query: 62 -VRPS 65
+RPS
Sbjct: 82 PLRPS 86
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG +++ ++ D+ S+G+G +TF+ E A A+ MNG+ LDGR + VD+
Sbjct: 22 LEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAMNGESLDGRQIRVDH 81
Query: 62 VRPSRR 67
S R
Sbjct: 82 AGKSAR 87
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 25/69 (36%), Positives = 44/69 (63%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
++ + FS++G + +A ++ D+ N S+G+G V F++E EA A+ MN + DGR++ VD
Sbjct: 17 VLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGAMNNQEFDGRIIRVD 76
Query: 61 NV--RPSRR 67
RP+ R
Sbjct: 77 KASERPAAR 85
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 25/64 (39%), Positives = 39/64 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ FS++GQV + ++ D+ S+G+G VTF E+A+ A+ MNGK +DGR + VD
Sbjct: 22 LEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQ 81
Query: 62 VRPS 65
S
Sbjct: 82 AGKS 85
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG +++ ++ D+ S+G+G +TF+ E A A+ MNG+ LDGR + VD+
Sbjct: 22 LEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDH 81
Query: 62 VRPSRR 67
S R
Sbjct: 82 AGKSAR 87
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG +++ ++ D+ S+G+G +TF+ E A A+ MNG+ LDGR + VD+
Sbjct: 22 LEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDH 81
Query: 62 VRPSRR 67
S R
Sbjct: 82 AGKSAR 87
>UNIPROTKB|H0YB86 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000523636
Uniprot:H0YB86
Length = 165
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 27/54 (50%), Positives = 40/54 (74%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 5 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 56
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG +++ ++ D+ S+G+G +TF+ E A A+ MNG+ LDGR + VD+
Sbjct: 22 LEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDH 81
Query: 62 VRPSRR 67
S R
Sbjct: 82 AGKSAR 87
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 25/59 (42%), Positives = 39/59 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ DAFS++G +T + ++ N S+G+G VTF ++A+ AL MNGK +DGR + VD
Sbjct: 21 LEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEGMNGKSVDGRTIRVD 79
>TAIR|locus:2079276 [details] [associations]
symbol:ATRZ-1A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009409 "response to cold" evidence=IMP] [GO:0009631 "cold
acclimation" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0009631
GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP001298 HOGENOM:HOG000276232
UniGene:At.48707 HSSP:Q61474 KO:K12885 EMBL:AY054613 EMBL:AF424613
EMBL:AY072457 EMBL:AK221725 EMBL:AK227088 IPI:IPI00530350
RefSeq:NP_189273.1 ProteinModelPortal:Q9LIN3 SMR:Q9LIN3
IntAct:Q9LIN3 STRING:Q9LIN3 PRIDE:Q9LIN3 EnsemblPlants:AT3G26420.1
GeneID:822246 KEGG:ath:AT3G26420 TAIR:At3g26420 InParanoid:Q9LIN3
OMA:SSKDDRY PhylomeDB:Q9LIN3 ProtClustDB:CLSN2723027
Genevestigator:Q9LIN3 Uniprot:Q9LIN3
Length = 245
Score = 136 (52.9 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 23/63 (36%), Positives = 40/63 (63%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ DAF ++G + +A +++DK S+G+G +TF ++ +A+ MNG LDGR + VD
Sbjct: 23 LRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDK 82
Query: 62 VRP 64
+P
Sbjct: 83 AQP 85
>UNIPROTKB|H0YEU6 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000527718 Uniprot:H0YEU6
Length = 249
Score = 136 (52.9 bits), Expect = 5.5e-09, P = 5.5e-09
Identities = 26/54 (48%), Positives = 40/54 (74%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 41 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 92
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ FS++GQ+++ ++ D+ S+G+G VTF ++A+ A+ MNGK +DGR + VD
Sbjct: 21 LEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAVDGRQIRVDQ 80
Query: 62 VRPS 65
S
Sbjct: 81 AGKS 84
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 29/66 (43%), Positives = 43/66 (65%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD- 60
+ DAF+ FG V A +I+D+ S+G+G V F+ E A A++EM+GK L+GR + V+
Sbjct: 51 LRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110
Query: 61 -NVRPS 65
N RPS
Sbjct: 111 ANDRPS 116
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG +++ ++ D+ S+G+G +TF+ E A + MNG+ LDGR + VD+
Sbjct: 22 LEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMNGESLDGRQIRVDH 81
Query: 62 VRPSRR 67
S R
Sbjct: 82 AGKSAR 87
>TAIR|locus:2088756 [details] [associations]
symbol:AT3G20930 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0000023 "maltose
metabolic process" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0019252 "starch biosynthetic
process" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:Q9V535 eggNOG:COG0724 EMBL:AY099828
EMBL:AY084565 EMBL:BT002195 IPI:IPI00537313 RefSeq:NP_566672.1
UniGene:At.43817 ProteinModelPortal:Q8L440 SMR:Q8L440 PRIDE:Q8L440
EnsemblPlants:AT3G20930.1 GeneID:821642 KEGG:ath:AT3G20930
TAIR:At3g20930 InParanoid:Q8L440 OMA:KAQMVDH PhylomeDB:Q8L440
ProtClustDB:CLSN2688611 ArrayExpress:Q8L440 Genevestigator:Q8L440
Uniprot:Q8L440
Length = 374
Score = 138 (53.6 bits), Expect = 9.8e-09, P = 9.8e-09
Identities = 31/71 (43%), Positives = 44/71 (61%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD--NV 62
AF FG++ + IIMDK SKGY + ++TEE A AL EMNGK+++G ++ VD
Sbjct: 301 AFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGKIINGWMIVVDVAKT 360
Query: 63 RPSRRYNTDVP 73
+P R+ N P
Sbjct: 361 KPFRQ-NRSQP 370
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 134 (52.2 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 27/54 (50%), Positives = 40/54 (74%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 147 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 198
Score = 126 (49.4 bits), Expect = 8.6e-08, P = 8.6e-08
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ D F +FG ++ D+ GK SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 40 LKDLFGKFGPALSVKVMTDESGK--SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG 97
Query: 61 NVRPSRRYNTDV 72
+ T++
Sbjct: 98 RAQKKVERQTEL 109
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 134 (52.2 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 27/54 (50%), Positives = 40/54 (74%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 183 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 234
Score = 113 (44.8 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 25/65 (38%), Positives = 39/65 (60%)
Query: 9 FGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67
FG ++ D+ GK SKG+G V+F E+AQKA+ EMNGK L+G+ ++V +
Sbjct: 83 FGPALSVKVMTDESGK--SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 140
Query: 68 YNTDV 72
T++
Sbjct: 141 RQTEL 145
Score = 105 (42.0 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 23 KNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYNTDVPLARLK 78
+N SKGYG V F T+E A++A+ +MNG LL+ R +FV + + ++ AR K
Sbjct: 6 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELG-ARAK 60
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ FS++GQ+++ ++ D+ S+G+G VTF ++A+ A+ MNGK +DGR + VD
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 81
Query: 62 VRPS 65
S
Sbjct: 82 AGKS 85
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ FS++GQ+++ ++ D+ S+G+G VTF ++A+ A+ MNGK +DGR + VD
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 81
Query: 62 VRPS 65
S
Sbjct: 82 AGKS 85
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ FS++GQ+++ ++ D+ S+G+G VTF ++A+ A+ MNGK +DGR + VD
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 81
Query: 62 VRPS 65
S
Sbjct: 82 AGKS 85
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ FS++GQ+++ ++ D+ S+G+G VTF ++A+ A+ MNGK +DGR + VD
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 81
Query: 62 VRPS 65
S
Sbjct: 82 AGKS 85
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D F FG +++ ++ D+ S+G+G +TF+ E A A+ MNG+ LDGR + VD+
Sbjct: 22 LEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRAMNGESLDGRQIRVDH 81
Query: 62 VRPSRR 67
S R
Sbjct: 82 AGKSAR 87
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ FS++GQ+++ ++ D+ S+G+G VTF ++A+ A+ MNGK +DGR + VD
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 81
Query: 62 VRPS 65
S
Sbjct: 82 AGKS 85
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ FS++GQ+++ ++ D+ S+G+G VTF ++A+ A+ MNGK +DGR + VD
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 81
Query: 62 VRPS 65
S
Sbjct: 82 AGKS 85
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ FS++GQ+++ ++ D+ S+G+G VTF ++A+ A+ MNGK +DGR + VD
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 81
Query: 62 VRPS 65
S
Sbjct: 82 AGKS 85
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ FS++GQ+++ ++ D+ S+G+G VTF ++A+ A+ MNGK +DGR + VD
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 81
Query: 62 VRPS 65
S
Sbjct: 82 AGKS 85
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ FS++GQ+++ ++ D+ S+G+G VTF ++A+ A+ MNGK +DGR + VD
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 81
Query: 62 VRPS 65
S
Sbjct: 82 AGKS 85
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ FS++GQ+++ ++ D+ S+G+G VTF ++A+ A+ MNGK +DGR + VD
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 81
Query: 62 VRPS 65
S
Sbjct: 82 AGKS 85
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ FS++GQ+++ ++ D+ S+G+G VTF ++A+ A+ MNGK +DGR + VD
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 81
Query: 62 VRPS 65
S
Sbjct: 82 AGKS 85
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ FS++GQ+++ ++ D+ S+G+G VTF ++A+ A+ MNGK +DGR + VD
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 81
Query: 62 VRPS 65
S
Sbjct: 82 AGKS 85
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ FS++GQ+++ ++ D+ S+G+G VTF ++A+ A+ MNGK +DGR + VD
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 81
Query: 62 VRPS 65
S
Sbjct: 82 AGKS 85
>UNIPROTKB|Q43472 [details] [associations]
symbol:blt801 "Glycine-rich RNA-binding protein blt801"
species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
Length = 161
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 27/66 (40%), Positives = 45/66 (68%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS++G V + II D+ S+G+G VTF+++E ++A+ MNG+ LDGR + V+
Sbjct: 22 LQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNE 81
Query: 62 VRPSRR 67
+ SRR
Sbjct: 82 AQ-SRR 86
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ FS++GQ+++ ++ D+ S+G+G VTF ++A+ A+ MNGK +DGR + VD
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 81
Query: 62 VRPS 65
S
Sbjct: 82 AGKS 85
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 24/60 (40%), Positives = 38/60 (63%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
FS++GQ+ + ++ D+ S+G+G VTF E+A+ A+ MNGK +DGR + VD S
Sbjct: 26 FSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTVDGRQIRVDQAGKS 85
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ FS++GQ+++ ++ D+ S+G+G VTF ++A+ A+ MNGK +DGR + VD
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 81
Query: 62 VRPS 65
S
Sbjct: 82 AGKS 85
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ FS++GQ+++ ++ D+ S+G+G VTF ++A+ A+ MNGK +DGR + VD
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 81
Query: 62 VRPS 65
S
Sbjct: 82 AGKS 85
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 132 (51.5 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D S FG + ++ D+ N SKGYG V F T E A++A+ +MNG LL+GR +FV +
Sbjct: 117 DTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFK 174
Query: 64 PSRRYNTDVPLARLK 78
+ ++ AR K
Sbjct: 175 SRKEREAELG-ARAK 188
Score = 107 (42.7 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGK 50
+ D F +FG ++ D+ GK SKG+G V+F E+AQKA+ EMNGK
Sbjct: 207 LKDLFGKFGPALSVKVMTDESGK--SKGFGFVSFERHEDAQKAVDEMNGK 254
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 129 (50.5 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ FS++GQ+++ ++ D+ S+G+G VTF ++A+ A+ MNGK +DGR + VD
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 81
Query: 62 VRPS 65
S
Sbjct: 82 AGKS 85
>RGD|1305015 [details] [associations]
symbol:Pabpc4 "poly(A) binding protein, cytoplasmic 4"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0008143
"poly(A) RNA binding" evidence=ISO] [GO:0008266 "poly(U) RNA
binding" evidence=ISO] [GO:0010494 "cytoplasmic stress granule"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0017130 "poly(C) RNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:1305015 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 Gene3D:1.10.1900.10
SUPFAM:SSF63570 EMBL:BC088337 IPI:IPI00780433 UniGene:Rn.201330
ProteinModelPortal:Q5I0G7 PRIDE:Q5I0G7 UCSC:RGD:1305015
InParanoid:Q5I0G7 ArrayExpress:Q5I0G7 Genevestigator:Q5I0G7
Uniprot:Q5I0G7
Length = 415
Score = 136 (52.9 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 26/54 (48%), Positives = 40/54 (74%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 69 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 120
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 138 (53.6 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FSQFG++ ++ D + S+G+G V F E+AQKA+T+MNGK + GR+L+V
Sbjct: 207 LQDLFSQFGKILSVKVMRDDSGH-SRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVG- 264
Query: 62 VRPSRRYNTDVPLAR 76
R +R L R
Sbjct: 265 -RAQKRVERQNELKR 278
Score = 121 (47.7 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 24/54 (44%), Positives = 38/54 (70%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F+ +G +T A ++ + G SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FAPYGMITSAKVMTEGGH--SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 365
Score = 119 (46.9 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 27/64 (42%), Positives = 38/64 (59%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + ++ D + S+G+G V F T E AQ A+ MNG LL+ R +FV + +
Sbjct: 117 DTFSTFGNILSCKVVCDD--HGSRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFK 174
Query: 64 PSRR 67
SRR
Sbjct: 175 -SRR 177
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 138 (53.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 28/55 (50%), Positives = 41/55 (74%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
AFS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 313 AFSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 132 (51.5 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D S FG + ++ D+ N SKGYG V F T E A++A+ +MNG LL+GR +FV +
Sbjct: 117 DTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFK 174
Query: 64 PSRRYNTDVPLARLK 78
+ ++ AR K
Sbjct: 175 SRKEREAELG-ARAK 188
Score = 126 (49.4 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ D F +FG ++ D+ GK SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKDLFGKFGPALSVKVMTDESGK--SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG 264
Query: 61 NVRPSRRYNTDV 72
+ T++
Sbjct: 265 RAQKKVERQTEL 276
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 138 (53.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 28/54 (51%), Positives = 40/54 (74%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++MD G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMDGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 133 (51.9 bits), Expect = 8.1e-08, P = 8.1e-08
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV +
Sbjct: 117 DTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 64 PSRRYNTDVPLARLK 78
+ ++ AR K
Sbjct: 175 SRKEREAELG-ARAK 188
Score = 122 (48.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 24/72 (33%), Positives = 45/72 (62%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ D FS++G ++ D+ GK S+G+G V+F E+AQ+A+ EMNGK ++G++++V
Sbjct: 207 LKDIFSKYGNAMSIRVMTDENGK--SRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVG 264
Query: 61 NVRPSRRYNTDV 72
+ T++
Sbjct: 265 RAQKKVERQTEL 276
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 138 (53.6 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 26/54 (48%), Positives = 41/54 (75%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A +++++G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 315 FSPFGSITSAKVMLEEGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 366
Score = 121 (47.7 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + ++ D+ N SKGY V F T++ A +A+ +MNG LL+ R +FV +
Sbjct: 118 DTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFK 175
Query: 64 PSRR 67
SR+
Sbjct: 176 -SRK 178
Score = 105 (42.0 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ + F ++G+ ++ D GK S+G+G V++ E+A KA+ EMNG L+G+ +FV
Sbjct: 208 LKELFDKYGKTLSVKVMTDPTGK--SRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVG 265
Query: 61 NVRPSRRYNTDVPLAR 76
R ++ L R
Sbjct: 266 --RAQKKMERQAELKR 279
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 2 IADAFSQFGQVTKATIIMD-KGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ + FSQFG+ ++ D GK SKG+G V++ E+A KA+ EMNGK + G+++FV
Sbjct: 120 LKELFSQFGKTLSVKVMRDPNGK--SKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 177
Query: 61 NVRPSRRYNTDVPLAR 76
R ++ L R
Sbjct: 178 --RAQKKVERQAELKR 191
Score = 99 (39.9 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 22/45 (48%), Positives = 30/45 (66%)
Query: 23 KNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67
+N SKGY V F T+E A KA+ +MNG LL+ R +FV + SR+
Sbjct: 47 ENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK-SRK 90
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 22/64 (34%), Positives = 41/64 (64%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ AF+++G++++ ++ D+ S+G+G VTF ++A+ A+ MNGK +DGR + VD
Sbjct: 21 LEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRVDQ 80
Query: 62 VRPS 65
S
Sbjct: 81 AGKS 84
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 137 (53.3 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 29/64 (45%), Positives = 41/64 (64%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + ++ D+ N SKGYG V F T+EEA++A+ +MNG L+ R +FV +
Sbjct: 117 DTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFK 174
Query: 64 PSRR 67
SRR
Sbjct: 175 -SRR 177
Score = 132 (51.5 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 27/54 (50%), Positives = 39/54 (72%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A + M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 324 FSPFGTITSAKVTMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 375
Score = 125 (49.1 bits), Expect = 5.9e-07, P = 5.9e-07
Identities = 27/72 (37%), Positives = 44/72 (61%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ D FS+FG ++ D+ GK SKG+G V+F E+A+KA+ EMNGK L+G+ ++V
Sbjct: 207 LQDLFSRFGPALSVKVMTDESGK--SKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVG 264
Query: 61 NVRPSRRYNTDV 72
+ T++
Sbjct: 265 RAQKKVERQTEL 276
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 136 (52.9 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 26/54 (48%), Positives = 40/54 (74%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 216 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 267
Score = 127 (49.8 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 28/64 (43%), Positives = 39/64 (60%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV +
Sbjct: 19 DTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 76
Query: 64 PSRR 67
SR+
Sbjct: 77 -SRK 79
Score = 127 (49.8 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 2 IADAFSQFGQVTKATIIMD-KGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ + FSQFG+ ++ D GK SKG+G V++ E+A KA+ EMNGK + G+++FV
Sbjct: 109 LKELFSQFGKTLSVKVMRDPNGK--SKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 166
Query: 61 NVRPSRRYNTDVPLAR 76
R ++ L R
Sbjct: 167 --RAQKKVERQAELKR 180
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 136 (52.9 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 24/58 (41%), Positives = 40/58 (68%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG +T A ++ D TSKG+G V ++ +EA +A+TEMNG+++ + L+V
Sbjct: 300 LREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYV 357
Score = 133 (51.9 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 24/63 (38%), Positives = 41/63 (65%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + ++ D G N+SKG+G V + T+E A KA+ ++NG +++G+ +FV +
Sbjct: 116 DTFSAFGNILSCKVVTDDG-NSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFK 174
Query: 64 PSR 66
S+
Sbjct: 175 SSK 177
Score = 100 (40.3 bits), Expect = 0.00024, P = 0.00024
Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 2 IADAFSQFGQVTKATIIMD-KGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLF 58
+ + Q+G++T TI+ D KGK SKG+G F + E A+ + NGK+ G+ ++
Sbjct: 204 LKELLQQYGEITNITIMADDKGK--SKGFGFANFESAEAAKNVVENENGKIFHGKPIY 259
>UNIPROTKB|H0YAP2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519622
Uniprot:H0YAP2
Length = 131
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ D F +FG ++ D+ GK SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 5 LKDLFGKFGPALSVKVMTDESGK--SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG 62
Query: 61 NVRPSRRYNTDV 72
+ T++
Sbjct: 63 RAQKKVERQTEL 74
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 135 (52.6 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 32/78 (41%), Positives = 42/78 (53%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
M+A+ F G VT A +I D+ SKG+G V F+T EEA+KA E G +DGR + VD
Sbjct: 254 MLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAEKAHGEKQGAFIDGREIKVD 313
Query: 61 NVRPSRRYNTDVPLARLK 78
+ D AR K
Sbjct: 314 FSTGKATNSNDAAGARAK 331
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 136 (52.9 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 26/54 (48%), Positives = 40/54 (74%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 243 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 294
Score = 127 (49.8 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 28/64 (43%), Positives = 39/64 (60%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV +
Sbjct: 46 DTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFK 103
Query: 64 PSRR 67
SR+
Sbjct: 104 -SRK 106
Score = 122 (48.0 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 28/76 (36%), Positives = 43/76 (56%)
Query: 2 IADAFSQFGQVTKATIIMD-KGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ + FSQFG+ ++ D GK SKG+G V++ E+A KA+ EMNGK + G+ +FV
Sbjct: 136 LRELFSQFGKTLSVKVMRDCSGK--SKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVG 193
Query: 61 NVRPSRRYNTDVPLAR 76
R ++ L R
Sbjct: 194 --RAQKKVERQAELKR 207
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 136 (52.9 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 26/54 (48%), Positives = 40/54 (74%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 127 (49.8 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 28/64 (43%), Positives = 39/64 (60%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV +
Sbjct: 117 DTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 64 PSRR 67
SR+
Sbjct: 175 -SRK 177
Score = 127 (49.8 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 2 IADAFSQFGQVTKATIIMD-KGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ + FSQFG+ ++ D GK SKG+G V++ E+A KA+ EMNGK + G+++FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDPNGK--SKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 264
Query: 61 NVRPSRRYNTDVPLAR 76
R ++ L R
Sbjct: 265 --RAQKKVERQAELKR 278
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 136 (52.9 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 26/54 (48%), Positives = 40/54 (74%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 121 (47.7 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + ++ D+ N SKGY V F T++ A +A+ +MNG LL+ R +FV +
Sbjct: 117 DTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFK 174
Query: 64 PSRR 67
SR+
Sbjct: 175 -SRK 177
Score = 119 (46.9 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ + FS++G+ ++ D GK SKG+G V+F E+A KA+ EMNGK ++G+++FV
Sbjct: 207 LKELFSKYGKTLSVKVMTDPTGK--SKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVG 264
Query: 61 NVRPSRRYNTDVPLAR 76
R ++ L R
Sbjct: 265 --RAQKKVERQAELKR 278
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 132 (51.5 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D S FG + ++ D+ N SKGYG V F T E A++A+ +MNG LL+GR +FV +
Sbjct: 117 DTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFK 174
Query: 64 PSRRYNTDVPLARLK 78
+ ++ AR K
Sbjct: 175 SRKEREAELG-ARAK 188
Score = 126 (49.4 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ D F +FG ++ D+ GK SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKDLFGKFGPALSVKVMTDESGK--SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG 264
Query: 61 NVRPSRRYNTDV 72
+ T++
Sbjct: 265 RAQKKVERQTEL 276
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 136 (52.9 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 26/54 (48%), Positives = 40/54 (74%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 128 (50.1 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 2 IADAFSQFGQVTKATIIMD-KGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ + FSQFG+ ++ D GK SKG+G V++ E+A KA+ EMNGK + G+V+FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDPSGK--SKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Query: 61 NVRPSRRYNTDVPLAR 76
R ++ L R
Sbjct: 265 --RAQKKVERQAELKR 278
Score = 127 (49.8 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 28/64 (43%), Positives = 39/64 (60%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV +
Sbjct: 117 DTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 64 PSRR 67
SR+
Sbjct: 175 -SRK 177
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 136 (52.9 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 26/54 (48%), Positives = 40/54 (74%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 128 (50.1 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 2 IADAFSQFGQVTKATIIMD-KGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ + FSQFG+ ++ D GK SKG+G V++ E+A KA+ EMNGK + G+V+FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDPSGK--SKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 264
Query: 61 NVRPSRRYNTDVPLAR 76
R ++ L R
Sbjct: 265 --RAQKKVERQAELKR 278
Score = 127 (49.8 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 28/64 (43%), Positives = 39/64 (60%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV +
Sbjct: 117 DTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 64 PSRR 67
SR+
Sbjct: 175 -SRK 177
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 136 (52.9 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 26/54 (48%), Positives = 40/54 (74%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 127 (49.8 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 28/64 (43%), Positives = 39/64 (60%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV +
Sbjct: 117 DTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFK 174
Query: 64 PSRR 67
SR+
Sbjct: 175 -SRK 177
Score = 122 (48.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 28/76 (36%), Positives = 43/76 (56%)
Query: 2 IADAFSQFGQVTKATIIMD-KGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ + FSQFG+ ++ D GK SKG+G V++ E+A KA+ EMNGK + G+ +FV
Sbjct: 207 LRELFSQFGKTLSVKVMRDCSGK--SKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVG 264
Query: 61 NVRPSRRYNTDVPLAR 76
R ++ L R
Sbjct: 265 --RAQKKVERQAELKR 278
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 136 (52.9 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 26/54 (48%), Positives = 40/54 (74%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 127 (49.8 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 28/64 (43%), Positives = 39/64 (60%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV +
Sbjct: 117 DTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 64 PSRR 67
SR+
Sbjct: 175 -SRK 177
Score = 127 (49.8 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 2 IADAFSQFGQVTKATIIMD-KGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ + FSQFG+ ++ D GK SKG+G V++ E+A KA+ EMNGK + G+++FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDPNGK--SKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVG 264
Query: 61 NVRPSRRYNTDVPLAR 76
R ++ L R
Sbjct: 265 --RAQKKVERQAELKR 278
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 136 (52.9 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 26/54 (48%), Positives = 40/54 (74%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 127 (49.8 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 28/64 (43%), Positives = 39/64 (60%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV +
Sbjct: 117 DTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 174
Query: 64 PSRR 67
SR+
Sbjct: 175 -SRK 177
Score = 127 (49.8 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 2 IADAFSQFGQVTKATIIMD-KGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ + FSQFG+ ++ D GK SKG+G V++ E+A KA+ EMNGK + G+V+FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDPSGK--SKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVG 264
Query: 61 NVRPSRRYNTDVPLAR 76
R ++ L R
Sbjct: 265 --RAQKKVERQAELKR 278
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 136 (52.9 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 29/71 (40%), Positives = 42/71 (59%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
I D FS FG + + +D+ SKGYG V F TEE AQ A+ ++NG LL G+ +FV
Sbjct: 136 IYDTFSLFGNILSCKVAIDED-GFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGK 194
Query: 62 VRPSRRYNTDV 72
+P + N ++
Sbjct: 195 FQPRAQRNREL 205
Score = 110 (43.8 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F +G +T A ++ D+ SKG+G V F EEA A+TEMN K++ + L+V
Sbjct: 337 FESYGNITSAKVMTDEN-GRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYV 389
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 134 (52.2 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 27/54 (50%), Positives = 40/54 (74%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 146 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 197
Score = 122 (48.0 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ + F +FG ++ D+ GK SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 39 LKELFGKFGPALSVKVMTDESGK--SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG 96
Query: 61 NVRPSRRYNTDV 72
+ T++
Sbjct: 97 RAQKKVERQTEL 108
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 136 (52.9 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 26/54 (48%), Positives = 40/54 (74%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 127 (49.8 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 28/64 (43%), Positives = 39/64 (60%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV +
Sbjct: 117 DTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFK 174
Query: 64 PSRR 67
SR+
Sbjct: 175 -SRK 177
Score = 122 (48.0 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 28/76 (36%), Positives = 43/76 (56%)
Query: 2 IADAFSQFGQVTKATIIMD-KGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ + FSQFG+ ++ D GK SKG+G V++ E+A KA+ EMNGK + G+ +FV
Sbjct: 207 LRELFSQFGKTLSVKVMRDCSGK--SKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVG 264
Query: 61 NVRPSRRYNTDVPLAR 76
R ++ L R
Sbjct: 265 --RAQKKVERQAELKR 278
>UNIPROTKB|E2R228 [details] [associations]
symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
Length = 149
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG +++ ++ D+ S+G+ +TF+ E A A+ MNGK LDGR + VD+
Sbjct: 22 LEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHASDAMRPMNGKSLDGRQIRVDH 81
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 136 (52.9 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 26/54 (48%), Positives = 40/54 (74%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 354 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 405
Score = 128 (50.1 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 2 IADAFSQFGQVTKATIIMD-KGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ + FSQFG+ ++ D GK SKG+G V++ E+A KA+ EMNGK + G+V+FV
Sbjct: 247 LKELFSQFGKTLSVKVMRDPSGK--SKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVG 304
Query: 61 NVRPSRRYNTDVPLAR 76
R ++ L R
Sbjct: 305 --RAQKKVERQAELKR 318
Score = 127 (49.8 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 28/64 (43%), Positives = 39/64 (60%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV +
Sbjct: 157 DTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFK 214
Query: 64 PSRR 67
SR+
Sbjct: 215 -SRK 217
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 137 (53.3 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 26/59 (44%), Positives = 43/59 (72%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
M+ + F FG +T A ++ D+ K SKG+G V F+++EEA KA+TEM+ K+++G+ L+V
Sbjct: 465 MLRELFEPFGTITSAKVMRDE-KEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPLYV 522
Score = 102 (41.0 bits), Expect = 0.00025, P = 0.00025
Identities = 25/78 (32%), Positives = 40/78 (51%)
Query: 4 DAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN- 61
D FS FG + + D+ GK SK YG V + EE A++A+ ++NG L + ++V
Sbjct: 122 DTFSMFGNILSCKVATDEFGK--SKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPF 179
Query: 62 VRPSRRYNTDVPLARLKI 79
++ S R D L +
Sbjct: 180 IKKSERATNDTKFTNLYV 197
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 137 (53.3 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 26/59 (44%), Positives = 43/59 (72%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
M+ + F FG +T A ++ D+ K SKG+G V F+++EEA KA+TEM+ K+++G+ L+V
Sbjct: 465 MLRELFEPFGTITSAKVMRDE-KEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPLYV 522
Score = 102 (41.0 bits), Expect = 0.00025, P = 0.00025
Identities = 25/78 (32%), Positives = 40/78 (51%)
Query: 4 DAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN- 61
D FS FG + + D+ GK SK YG V + EE A++A+ ++NG L + ++V
Sbjct: 122 DTFSMFGNILSCKVATDEFGK--SKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPF 179
Query: 62 VRPSRRYNTDVPLARLKI 79
++ S R D L +
Sbjct: 180 IKKSERATNDTKFTNLYV 197
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 135 (52.6 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 27/59 (45%), Positives = 43/59 (72%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F FG +T A +++D+ GK SKG+G V F+T EEA KA+TEMN ++++G+ L+V
Sbjct: 352 LEEEFKPFGTITSAKVMVDEAGK--SKGFGFVCFTTPEEATKAITEMNTRMINGKPLYV 408
Score = 105 (42.0 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 24/62 (38%), Positives = 37/62 (59%)
Query: 6 FSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
FS FG++T + D+ GK SKG+G V F E A KA+ E+N K ++G+ ++V +
Sbjct: 253 FSPFGKITSIYLEKDQDGK--SKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQK 310
Query: 65 SR 66
R
Sbjct: 311 KR 312
>UNIPROTKB|B4E2X2 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
Uniprot:B4E2X2
Length = 263
Score = 128 (50.1 bits), Expect = 5.4e-08, P = 5.4e-08
Identities = 22/59 (37%), Positives = 39/59 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ FS++GQ+++ ++ D+ S+G+G VTF ++A+ A+ MNGK +DGR + VD
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 80
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 134 (52.2 bits), Expect = 5.5e-08, P = 5.5e-08
Identities = 27/54 (50%), Positives = 40/54 (74%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 250 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 301
Score = 133 (51.9 bits), Expect = 7.0e-08, P = 7.0e-08
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV +
Sbjct: 53 DTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 110
Query: 64 PSRRYNTDVPLARLK 78
+ ++ AR K
Sbjct: 111 SRKEREAELG-ARAK 124
Score = 122 (48.0 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ + F +FG ++ D+ GK SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 143 LKELFGKFGPALSVKVMTDESGK--SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG 200
Query: 61 NVRPSRRYNTDV 72
+ T++
Sbjct: 201 RAQKKVERQTEL 212
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 134 (52.2 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 27/54 (50%), Positives = 40/54 (74%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 269 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 320
Score = 133 (51.9 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV +
Sbjct: 72 DTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 129
Query: 64 PSRRYNTDVPLARLK 78
+ ++ AR K
Sbjct: 130 SRKEREAELG-ARAK 143
Score = 126 (49.4 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ D F +FG ++ D+ GK SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 162 LKDLFGKFGPALSVKVMTDESGK--SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG 219
Query: 61 NVRPSRRYNTDV 72
+ T++
Sbjct: 220 RAQKKVERQTEL 231
>UNIPROTKB|D6W5Y5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
Bgee:D6W5Y5 Uniprot:D6W5Y5
Length = 297
Score = 129 (50.5 bits), Expect = 5.8e-08, P = 5.8e-08
Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ FS++GQ+++ ++ D+ S+G+G VTF ++A+ A+ MNGK +DGR + VD
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 81
Query: 62 VRPS 65
S
Sbjct: 82 AGKS 85
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 134 (52.2 bits), Expect = 5.9e-08, P = 5.9e-08
Identities = 27/54 (50%), Positives = 40/54 (74%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 282 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 333
Score = 126 (49.4 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ D F +FG ++ D+ GK SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 175 LKDLFGKFGPALSVKVMTDESGK--SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG 232
Query: 61 NVRPSRRYNTDV 72
+ T++
Sbjct: 233 RAQKKVERQTEL 244
Score = 109 (43.4 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 25/65 (38%), Positives = 40/65 (61%)
Query: 14 KATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYNTDVP 73
K+ ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV + + ++
Sbjct: 95 KSGVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 152
Query: 74 LARLK 78
AR K
Sbjct: 153 -ARAK 156
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 134 (52.2 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 27/54 (50%), Positives = 40/54 (74%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 131 (51.2 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + ++ D+ N SKGYG V F T E A++A+ +MNG LL+ R +FV +
Sbjct: 117 DTFSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 64 PSRRYNTDVPLARLK 78
+ ++ AR K
Sbjct: 175 SRKEREAEMG-ARAK 188
Score = 111 (44.1 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 23/72 (31%), Positives = 42/72 (58%)
Query: 2 IADAFSQFGQVTKATIIMD-KGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ + F ++G ++ D GK SKG+G V+F E+AQ+A+ EMNGK ++G+ ++V
Sbjct: 207 LKEIFCKYGPALSIRVMTDDSGK--SKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVG 264
Query: 61 NVRPSRRYNTDV 72
+ T++
Sbjct: 265 RAQKKGERQTEL 276
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 134 (52.2 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 27/54 (50%), Positives = 40/54 (74%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 133 (51.9 bits), Expect = 8.1e-08, P = 8.1e-08
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV +
Sbjct: 117 DTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 64 PSRRYNTDVPLARLK 78
+ ++ AR K
Sbjct: 175 SRKEREAELG-ARAK 188
Score = 126 (49.4 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ D F +FG ++ D+ GK SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKDLFGKFGPALSVKVMTDESGK--SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG 264
Query: 61 NVRPSRRYNTDV 72
+ T++
Sbjct: 265 RAQKKVERQTEL 276
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 134 (52.2 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 27/54 (50%), Positives = 40/54 (74%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 133 (51.9 bits), Expect = 8.1e-08, P = 8.1e-08
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV +
Sbjct: 117 DTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 64 PSRRYNTDVPLARLK 78
+ ++ AR K
Sbjct: 175 SRKEREAELG-ARAK 188
Score = 126 (49.4 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ D F +FG ++ D+ GK SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKDLFGKFGPALSVKVMTDESGK--SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG 264
Query: 61 NVRPSRRYNTDV 72
+ T++
Sbjct: 265 RAQKKVERQTEL 276
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 134 (52.2 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 27/54 (50%), Positives = 40/54 (74%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 133 (51.9 bits), Expect = 8.1e-08, P = 8.1e-08
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV +
Sbjct: 117 DTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 64 PSRRYNTDVPLARLK 78
+ ++ AR K
Sbjct: 175 SRKEREAELG-ARAK 188
Score = 126 (49.4 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ D F +FG ++ D+ GK SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKDLFGKFGPALSVKVMTDESGK--SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG 264
Query: 61 NVRPSRRYNTDV 72
+ T++
Sbjct: 265 RAQKKVERQTEL 276
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 134 (52.2 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 27/54 (50%), Positives = 40/54 (74%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 133 (51.9 bits), Expect = 8.1e-08, P = 8.1e-08
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV +
Sbjct: 117 DTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 64 PSRRYNTDVPLARLK 78
+ ++ AR K
Sbjct: 175 SRKEREAELG-ARAK 188
Score = 126 (49.4 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ D F +FG ++ D+ GK SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKDLFGKFGPALSVKVMTDESGK--SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG 264
Query: 61 NVRPSRRYNTDV 72
+ T++
Sbjct: 265 RAQKKVERQTEL 276
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 134 (52.2 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 27/54 (50%), Positives = 40/54 (74%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 133 (51.9 bits), Expect = 8.1e-08, P = 8.1e-08
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV +
Sbjct: 117 DTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 64 PSRRYNTDVPLARLK 78
+ ++ AR K
Sbjct: 175 SRKEREAELG-ARAK 188
Score = 126 (49.4 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ D F +FG ++ D+ GK SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKDLFGKFGPALSVKVMTDESGK--SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG 264
Query: 61 NVRPSRRYNTDV 72
+ T++
Sbjct: 265 RAQKKVERQTEL 276
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 134 (52.2 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 27/54 (50%), Positives = 40/54 (74%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 133 (51.9 bits), Expect = 8.1e-08, P = 8.1e-08
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV +
Sbjct: 117 DTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 64 PSRRYNTDVPLARLK 78
+ ++ AR K
Sbjct: 175 SRKEREAELG-ARAK 188
Score = 122 (48.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ + F +FG ++ D+ GK SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKELFGKFGPALSVKVMTDESGK--SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG 264
Query: 61 NVRPSRRYNTDV 72
+ T++
Sbjct: 265 RAQKKVERQTEL 276
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 134 (52.2 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 27/54 (50%), Positives = 40/54 (74%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 133 (51.9 bits), Expect = 8.1e-08, P = 8.1e-08
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV +
Sbjct: 117 DTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 64 PSRRYNTDVPLARLK 78
+ ++ AR K
Sbjct: 175 SRKEREAELG-ARAK 188
Score = 122 (48.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ + F +FG ++ D+ GK SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKELFGKFGPALSVKVMTDESGK--SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG 264
Query: 61 NVRPSRRYNTDV 72
+ T++
Sbjct: 265 RAQKKVERQTEL 276
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 134 (52.2 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 27/54 (50%), Positives = 40/54 (74%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 133 (51.9 bits), Expect = 8.3e-08, P = 8.3e-08
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV +
Sbjct: 117 DTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 64 PSRRYNTDVPLARLK 78
+ ++ AR K
Sbjct: 175 SRKEREAELG-ARAK 188
Score = 126 (49.4 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ D F +FG ++ D+ GK SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKDLFGKFGPALSVKVMTDESGK--SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG 264
Query: 61 NVRPSRRYNTDV 72
+ T++
Sbjct: 265 RAQKKVERQTEL 276
>UNIPROTKB|I3LQ36 [details] [associations]
symbol:I3LQ36 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU210877
Ensembl:ENSSSCT00000005974 Uniprot:I3LQ36
Length = 161
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 24/66 (36%), Positives = 37/66 (56%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + + ++ D S+G+G +TF+ E A A+ NG+ LDGR + VD+
Sbjct: 22 LEDHFSSFGPIFEVVVVKDWETRRSQGFGFITFTNPEHASNAMRATNGESLDGRQIHVDH 81
Query: 62 VRPSRR 67
S R
Sbjct: 82 AGKSAR 87
>TAIR|locus:2168133 [details] [associations]
symbol:AT5G59860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00539298
RefSeq:NP_200794.1 UniGene:At.66722 ProteinModelPortal:F4JXD2
SMR:F4JXD2 EnsemblPlants:AT5G59860.1 GeneID:836108
KEGG:ath:AT5G59860 Uniprot:F4JXD2
Length = 157
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 21/49 (42%), Positives = 36/49 (73%)
Query: 15 ATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
A +I D+ KG+G +TF +E++AQKAL +NGK+++GR++FV+ +
Sbjct: 95 ARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLIFVETAK 143
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 133 (51.9 bits), Expect = 7.4e-08, P = 7.4e-08
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV +
Sbjct: 117 DTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 64 PSRRYNTDVPLARLK 78
+ ++ AR K
Sbjct: 175 SRKEREAELG-ARAK 188
Score = 126 (49.4 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ D F +FG ++ D+ GK SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKDLFGKFGPALSVKVMTDESGK--SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG 264
Query: 61 NVRPSRRYNTDV 72
+ T++
Sbjct: 265 RAQKKVERQTEL 276
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 124 (48.7 bits), Expect = 7.9e-08, P = 7.9e-08
Identities = 26/66 (39%), Positives = 43/66 (65%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + FS FG +++A ++M+ G+ KG+G V FS+ EEA KA+ EMNG+++ + L V
Sbjct: 154 LKEEFSSFGSISRAKVMMEVGQG--KGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTL 211
Query: 62 VRPSRR 67
+ RR
Sbjct: 212 GQARRR 217
Score = 118 (46.6 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 24/59 (40%), Positives = 38/59 (64%)
Query: 2 IADAFSQFGQVTKATIIMD-KGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F ++G +I D GK SKG+G V + T E AQKA+ +++GK +DG+VL+V
Sbjct: 51 LKELFCEYGPTESVKVIRDASGK--SKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV 107
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 133 (51.9 bits), Expect = 8.0e-08, P = 8.0e-08
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + FS FG ++MD S+G+G V + EEAQKA+TEMNGK ++GR+++V
Sbjct: 207 LKEIFSAFGNTLSVKVMMDNS-GRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVG- 264
Query: 62 VRPSRRYNTDVPLAR 76
R +R L R
Sbjct: 265 -RAQKRIERQGELKR 278
Score = 122 (48.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 26/54 (48%), Positives = 40/54 (74%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS +G +T +T +M +G + SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPYGTIT-STKVMTEGGH-SKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
Score = 121 (47.7 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + ++ D+ S+GYG V F T+E A +A+ MNG LL+ R +FV + +
Sbjct: 117 DTFSAFGDILSCKVVCDE--YGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFK 174
Query: 64 PSRR 67
SRR
Sbjct: 175 -SRR 177
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 133 (51.9 bits), Expect = 8.0e-08, P = 8.0e-08
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + FS+FG+ ++MD SKG+G V F EEAQKA+ +MNGK ++GR+++V
Sbjct: 207 LREIFSRFGKTLSVKVMMDH-TGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVG- 264
Query: 62 VRPSRRYNTDVPLAR 76
R +R L R
Sbjct: 265 -RAQKRLERQSELKR 278
Score = 124 (48.7 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 25/54 (46%), Positives = 38/54 (70%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS +G +T A ++ + G SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPYGTITSAKVMTEGGH--SKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
Score = 120 (47.3 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + ++ D+ N S+G+G V F T+E A +A+ MNG LL+ R +FV + +
Sbjct: 117 DTFSAFGNILSCKVVCDE--NGSRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFK 174
Query: 64 PSRR 67
SR+
Sbjct: 175 -SRK 177
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 133 (51.9 bits), Expect = 8.1e-08, P = 8.1e-08
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV +
Sbjct: 117 DTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFK 174
Query: 64 PSRRYNTDVPLARLK 78
+ ++ AR K
Sbjct: 175 SRKEREAELG-ARAK 188
Score = 132 (51.5 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 26/54 (48%), Positives = 40/54 (74%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F+ FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FTPFGSITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 117 (46.2 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 25/68 (36%), Positives = 40/68 (58%)
Query: 6 FSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
F Q+G ++ D GK S+G+G V+F E+AQKA+ +MNGK L+G+ +FV +
Sbjct: 211 FGQYGAALSVKVMTDDHGK--SRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQK 268
Query: 65 SRRYNTDV 72
T++
Sbjct: 269 KVERQTEL 276
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 133 (51.9 bits), Expect = 8.1e-08, P = 8.1e-08
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV +
Sbjct: 117 DTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFK 174
Query: 64 PSRRYNTDVPLARLK 78
+ ++ AR K
Sbjct: 175 SRKEREAELG-ARAK 188
Score = 128 (50.1 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 26/54 (48%), Positives = 39/54 (72%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FLPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 118 (46.6 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 2 IADAFSQFGQVTKATIIMD-KGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ + F ++G ++ D GK SKG+G V+F E+AQKA+ EMNGK ++G+ +FV
Sbjct: 207 LKEMFGKYGPALSVKVMTDDNGK--SKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVG 264
Query: 61 NVRPSRRYNTDV 72
+ T++
Sbjct: 265 RAQKKVERQTEL 276
>TAIR|locus:2119505 [details] [associations]
symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
Genevestigator:Q6ID29 Uniprot:Q6ID29
Length = 87
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 23/55 (41%), Positives = 39/55 (70%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
M+ +AFS +G V A ++ D+ + S+G+G VT+S+ EA+ A++ M+GK L+GR
Sbjct: 18 MLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDGKELNGR 72
>TAIR|locus:2119797 [details] [associations]
symbol:AT4G20030 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BT025729
EMBL:AK176834 IPI:IPI00538556 RefSeq:NP_567594.1 UniGene:At.26265
UniGene:At.71246 ProteinModelPortal:Q67XI5 SMR:Q67XI5 STRING:Q67XI5
EnsemblPlants:AT4G20030.1 GeneID:827748 KEGG:ath:AT4G20030
TAIR:At4g20030 HOGENOM:HOG000005780 InParanoid:Q67XI5 OMA:DEVADCW
PhylomeDB:Q67XI5 ProtClustDB:CLSN2689522 Genevestigator:Q67XI5
Uniprot:Q67XI5
Length = 152
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 19/62 (30%), Positives = 41/62 (66%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
FS FG++ + +I D+ SKGY + F+++++A A+ M+ ++ +GR++++D +P
Sbjct: 60 FSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMYNGRMIYIDIAKPG 119
Query: 66 RR 67
+R
Sbjct: 120 KR 121
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 132 (51.5 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F +FGQV ++ D+G SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 211 FGRFGQVLSVKVMTDEG-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 263
Score = 130 (50.8 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 28/64 (43%), Positives = 41/64 (64%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + ++ D+ N SKG+G V F TEE A++A+ +MNG LL+ R +FV +
Sbjct: 117 DTFSAFGNILSCKVVCDE--NGSKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFK 174
Query: 64 PSRR 67
SR+
Sbjct: 175 -SRK 177
Score = 120 (47.3 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 24/54 (44%), Positives = 38/54 (70%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T ++ + G+ SKG+G V FS+ EEA KA++EMNG+++ + L+V
Sbjct: 314 FSPFGTITSTKVMTEGGR--SKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYV 365
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 132 (51.5 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 27/54 (50%), Positives = 39/54 (72%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A I+ D+ + SKG+G V ++T EEA KA+TEMN ++L G+ L+V
Sbjct: 384 FSAFGTITSAKIMTDE-QGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYV 436
Score = 112 (44.5 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 23/74 (31%), Positives = 44/74 (59%)
Query: 3 ADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV 62
+D F QFG++T +++ D+ + +G+G V ++ E AQKA+ E+N K G+ L+V
Sbjct: 278 SDLFGQFGEITSLSLVKDQN-DKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVG-- 334
Query: 63 RPSRRYNTDVPLAR 76
R +++ + L +
Sbjct: 335 RAQKKHEREEELRK 348
Score = 104 (41.7 bits), Expect = 0.00011, P = 0.00011
Identities = 24/64 (37%), Positives = 38/64 (59%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG++ + +D+ N +KGYG V F + E A A+ +NG LL+ + ++V +
Sbjct: 186 DTFSAFGKILSCKVAVDELGN-AKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGH-H 243
Query: 64 PSRR 67
SRR
Sbjct: 244 VSRR 247
>TAIR|locus:2027438 [details] [associations]
symbol:GR-RBP6 "glycine-rich RNA-binding protein 6"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009651 "response to salt stress"
evidence=IEP] [GO:0005768 "endosome" evidence=IDA] [GO:0005794
"Golgi apparatus" evidence=IDA] [GO:0005802 "trans-Golgi network"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0005794
GO:GO:0000166 GO:GO:0005768 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005802 HSSP:P09651 EMBL:AC026238 EMBL:BT005999 EMBL:AK227482
EMBL:AY085358 IPI:IPI00537929 PIR:A86320 RefSeq:NP_173298.1
UniGene:At.356 UniGene:At.41785 ProteinModelPortal:Q9FZ84
SMR:Q9FZ84 IntAct:Q9FZ84 PaxDb:Q8LEL7 PRIDE:Q9FZ84
EnsemblPlants:AT1G18630.1 GeneID:838444 KEGG:ath:AT1G18630
GeneFarm:3974 TAIR:At1g18630 eggNOG:NOG255734 InParanoid:Q9FZ84
OMA:IFRQPRA PhylomeDB:Q9FZ84 ProtClustDB:CLSN2914186
Genevestigator:Q9FZ84 Uniprot:Q9FZ84
Length = 155
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 21/59 (35%), Positives = 37/59 (62%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
++ +AF FG++ A +++D+ S+G+G VT+ + E A A+ M K LDGR++ V
Sbjct: 51 LLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAMQNKELDGRIIGV 109
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 129 (50.5 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + ++ D+ N SKGYG V F T+E A +A+ MNG LL+ R +FV + +
Sbjct: 117 DTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFK 174
Query: 64 PSRR 67
SR+
Sbjct: 175 -SRK 177
Score = 123 (48.4 bits), Expect = 9.3e-07, P = 9.3e-07
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + F++FG+ ++ D+ + S+G+G V F +A++A+TEMNGK L+GRVL+V
Sbjct: 207 LKNIFTEFGKTLSVCVMTDE-RGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVG- 264
Query: 62 VRPSRRYNTDVPLAR 76
R +R L R
Sbjct: 265 -RAQKRLERQGELKR 278
Score = 122 (48.0 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 24/54 (44%), Positives = 38/54 (70%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F+ +G +T A ++ D G S+G+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FAPYGTITSAKVMTDGGH--SRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
Score = 31 (16.0 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 59 VDNVRPSRRYNTDVP 73
V N+RP+ R+ P
Sbjct: 422 VPNLRPAPRWAFQAP 436
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 130 (50.8 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + FS FG ++MD S+G+G V + EEAQKA++EMNGK ++GR+++V
Sbjct: 207 LREIFSAFGNTLSVKVMMDDS-GRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVG- 264
Query: 62 VRPSRRYNTDVPLAR 76
R +R L R
Sbjct: 265 -RAQKRIERQSELKR 278
Score = 122 (48.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + ++ D+ + S+GYG V F T E A +A+ MNG LL+ R +FV + +
Sbjct: 117 DTFSAFGNILSCKVVCDE--HGSRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFK 174
Query: 64 PSRR 67
SRR
Sbjct: 175 -SRR 177
Score = 118 (46.6 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F +G +T A ++ + G SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FLPYGTITSAKVMTEGGH--SKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 130 (50.8 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS+FG++ ++ D + S+G+G V F EEAQKA+ +MNGK + GR+L+V
Sbjct: 207 LQDLFSRFGKMLSVKVMRDDSGH-SRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVG- 264
Query: 62 VRPSRRYNTDVPLAR 76
R +R L R
Sbjct: 265 -RAQKRVERQSELKR 278
Score = 126 (49.4 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + ++ D + S+G+G V F T E AQ+A+T MNG LL+ R +FV + +
Sbjct: 117 DTFSTFGNILSCKVVCDD--HGSRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGHFK 174
Query: 64 PSRR 67
SRR
Sbjct: 175 -SRR 177
Score = 125 (49.1 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS +G +T A ++ + G SKG+G V FS+ EEA KA+TEMNG++L + L+V
Sbjct: 314 FSPYGVITSAKVMTEGGH--SKGFGFVCFSSPEEATKAVTEMNGRILGTKPLYV 365
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 124 (48.7 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV--R 63
FS+ G+V +A +I D+ SKG+G VT+ + +E Q A+ ++G LDGR + V R
Sbjct: 224 FSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283
Query: 64 PSRR 67
P RR
Sbjct: 284 PPRR 287
Score = 101 (40.6 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 25/63 (39%), Positives = 32/63 (50%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+A F G V +I DK S+G+G VT S+ E + A + NG LDGR L V N
Sbjct: 107 LAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRV-N 165
Query: 62 VRP 64
P
Sbjct: 166 AGP 168
>WB|WBGene00012904 [details] [associations]
symbol:tiar-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HSSP:P11940 EMBL:AL110485 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 RefSeq:NP_496718.1 UniGene:Cel.14057
ProteinModelPortal:Q9U2F5 SMR:Q9U2F5 IntAct:Q9U2F5 PaxDb:Q9U2F5
EnsemblMetazoa:Y46G5A.13 GeneID:174909 KEGG:cel:CELE_Y46G5A.13
UCSC:Y46G5A.13 CTD:174909 WormBase:Y46G5A.13 InParanoid:Q9U2F5
NextBio:886000 Uniprot:Q9U2F5
Length = 434
Score = 127 (49.8 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 24/56 (42%), Positives = 37/56 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVL 57
+ +AF +FG+V++A II D N KGYG V++ E+A++A+ EMNG L R +
Sbjct: 148 LREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTI 203
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 129 (50.5 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FSQFG++ ++ D + S+G+G V F EEAQKA+ MNG+ + GR+L+V
Sbjct: 207 LQDLFSQFGKMLSVKVMRDDSGH-SRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVG- 264
Query: 62 VRPSRRYNTDVPLAR 76
R +R L R
Sbjct: 265 -RAQKRVERQNELKR 278
Score = 123 (48.4 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 27/64 (42%), Positives = 40/64 (62%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + ++ D+ + S+G+G V F T E AQ A++ MNG LL+ R +FV + +
Sbjct: 117 DTFSTFGNILSCKVVCDE--HGSRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFK 174
Query: 64 PSRR 67
SRR
Sbjct: 175 -SRR 177
Score = 122 (48.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 25/54 (46%), Positives = 38/54 (70%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS +G +T A ++ + G SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPYGVITSAKVMTEGGH--SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 365
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 117 (46.2 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVL 57
++ AFS FG V++A ++ D S+GYG V F +A+KALT M+G+ L R +
Sbjct: 197 VLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAI 253
Score = 31 (16.0 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 58 FVDNVRPSRRYNTDVPL 74
+V N+ P N VPL
Sbjct: 311 YVGNLTPYTTQNDIVPL 327
>UNIPROTKB|G3V5Z6 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23
ProteinModelPortal:G3V5Z6 SMR:G3V5Z6 Ensembl:ENST00000555209
ArrayExpress:G3V5Z6 Bgee:G3V5Z6 Uniprot:G3V5Z6
Length = 189
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
M+ F FG++ ++ D SKGYG +TFS E A++AL ++NG L GR + V
Sbjct: 28 MLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVG 87
Query: 61 NVRPSRRYNTDV 72
+V TD+
Sbjct: 88 HVTERLDGGTDI 99
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 22/58 (37%), Positives = 39/58 (67%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
F Q+G++ +A +IMD+ SKG+ +T+ T++ AQ+A+++ NG L GR + V+ R
Sbjct: 38 FGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKANGIDLQGRKIRVNIAR 95
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 22/58 (37%), Positives = 39/58 (67%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
F Q+G++ +A +IMD+ SKG+ +T+ T++ AQ+A+++ NG L GR + V+ R
Sbjct: 38 FGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKANGIDLQGRKIRVNIAR 95
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 26/56 (46%), Positives = 34/56 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVL 57
+ DAFS FG+V + I DKG S+G+G V F+ E +A A M+GK L GR L
Sbjct: 57 LKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDGKGLLGRPL 112
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 125 (49.1 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 22/58 (37%), Positives = 41/58 (70%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS FG +++ ++ ++G+ SKG+G + FS+ E+A KA+TEMNG++L + L +
Sbjct: 309 LRNEFSSFGSISRVKVMQEEGQ--SKGFGLICFSSPEDATKAMTEMNGRILGSKPLSI 364
Score = 121 (47.7 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 24/59 (40%), Positives = 41/59 (69%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS++G+ ++ D GK SKG+G V+F + E A+KA+ EMNG+ ++G+++FV
Sbjct: 206 LKDVFSKYGKTLSVKVMTDSSGK--SKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFV 262
Score = 105 (42.0 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG++ + ++ D SKGY V F + A +A+ EMNGKLL G +FV
Sbjct: 118 FSAFGKILSSKVMSDD--QGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFV 169
>FB|FBgn0031883 [details] [associations]
symbol:CG11266 species:7227 "Drosophila melanogaster"
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GO:GO:0000381 HSSP:Q60900
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 UniGene:Dm.7322 GeneID:33989
KEGG:dme:Dmel_CG11266 FlyBase:FBgn0031883 ChiTaRS:CG11266
GenomeRNAi:33989 NextBio:786302 EMBL:AY051860 RefSeq:NP_609095.1
RefSeq:NP_723243.1 SMR:Q9VM49 IntAct:Q9VM49 MINT:MINT-745605
STRING:Q9VM49 EnsemblMetazoa:FBtr0089636 EnsemblMetazoa:FBtr0089640
UCSC:CG11266-RA InParanoid:Q9VM49 Uniprot:Q9VM49
Length = 594
Score = 128 (50.1 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
M+ F FG++ +IMD SKGYG +T+ ++A+KAL ++NG L GR++ V
Sbjct: 350 MLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAGRLMKVG 409
Query: 61 NVRPSRRYNT 70
NV NT
Sbjct: 410 NVTERLDMNT 419
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 128 (50.1 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 27/69 (39%), Positives = 42/69 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FSQFG+ T++ +M S+G+G + F EEAQKA+ MNGK + G++L+V
Sbjct: 207 LQDLFSQFGK-TQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGR 265
Query: 62 VRP-SRRYN 69
+ + R N
Sbjct: 266 AQKRAERQN 274
Score = 121 (47.7 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 24/58 (41%), Positives = 39/58 (67%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS +G +T A ++ + SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 310 LKEVFSTYGVITSAKVMTESSH--SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 365
Score = 120 (47.3 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 24/69 (34%), Positives = 42/69 (60%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + + ++ ++ + S+G+G V F T E AQKA+ MNG LL+ R +FV + +
Sbjct: 117 DTFSTFGSILSSKVVYNE--HGSRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFK 174
Query: 64 PSRRYNTDV 72
++ ++
Sbjct: 175 SRQKREAEL 183
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 128 (50.1 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + FS FG ++MD S+G+G V + EEAQKA++EMNGK ++GR+++V
Sbjct: 207 LREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVG- 264
Query: 62 VRPSRRYNTDVPLAR 76
R +R L R
Sbjct: 265 -RAQKRIERQGELKR 278
Score = 124 (48.7 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 25/54 (46%), Positives = 38/54 (70%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS +G +T A ++ + G SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPYGTITSAKVMTEGGH--SKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
Score = 124 (48.7 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 27/64 (42%), Positives = 40/64 (62%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + ++ D+ + S+GYG V F T+E A +A+ MNG LL+ R +FV + +
Sbjct: 117 DTFSAFGNILSCKVVCDE--HGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFK 174
Query: 64 PSRR 67
SRR
Sbjct: 175 -SRR 177
>UNIPROTKB|I3LH22 [details] [associations]
symbol:LOC100514264 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU915617
Ensembl:ENSSSCT00000023009 OMA:QALEDHI Uniprot:I3LH22
Length = 161
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D S F +++ I+ D+ S+G+G +TF+ E A + MNG+ LDGR + VD+
Sbjct: 22 LEDHISSFRPISEVVIVKDRETQRSRGFGFITFTNPEHASNVMRAMNGESLDGRQIHVDH 81
Query: 62 VRPS 65
S
Sbjct: 82 AGKS 85
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 125 (49.1 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 22/58 (37%), Positives = 41/58 (70%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS FG +++ ++ ++G+ SKG+G + FS+ E+A KA+TEMNG++L + L +
Sbjct: 367 LRNEFSSFGSISRVKVMQEEGQ--SKGFGLICFSSPEDATKAMTEMNGRILGSKPLSI 422
Score = 121 (47.7 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 24/59 (40%), Positives = 41/59 (69%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS++G+ ++ D GK SKG+G V+F + E A+KA+ EMNG+ ++G+++FV
Sbjct: 264 LKDVFSKYGKTLSVKVMTDSSGK--SKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFV 320
Score = 105 (42.0 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG++ + ++ D SKGY V F + A +A+ EMNGKLL G +FV
Sbjct: 176 FSAFGKILSSKVMSDD--QGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFV 227
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 124 (48.7 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 26/66 (39%), Positives = 43/66 (65%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + FS FG +++A ++M+ G+ KG+G V FS+ EEA KA+ EMNG+++ + L V
Sbjct: 318 LKEEFSSFGSISRAKVMMEVGQG--KGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTL 375
Query: 62 VRPSRR 67
+ RR
Sbjct: 376 GQARRR 381
Score = 118 (46.6 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 24/59 (40%), Positives = 38/59 (64%)
Query: 2 IADAFSQFGQVTKATIIMD-KGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F ++G +I D GK SKG+G V + T E AQKA+ +++GK +DG+VL+V
Sbjct: 215 LKELFCEYGPTESVKVIRDASGK--SKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV 271
>UNIPROTKB|H0YJJ3 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23 Ensembl:ENST00000553884
Uniprot:H0YJJ3
Length = 214
Score = 118 (46.6 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
M+ F FG++ ++ D SKGYG +TFS E A++AL ++NG L GR + V
Sbjct: 53 MLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVG 112
Query: 61 NVRPSRRYNTDV 72
+V TD+
Sbjct: 113 HVTERLDGGTDI 124
>UNIPROTKB|H0YEQ8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000470443 Uniprot:H0YEQ8
Length = 112
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 24/52 (46%), Positives = 32/52 (61%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R
Sbjct: 61 DTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDR 110
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 21/61 (34%), Positives = 39/61 (63%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV-RP 64
F ++G++ + ++ D+ N S+G+ VTF + +A+ A +MNGK LDG+ + V+ +P
Sbjct: 28 FGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKP 87
Query: 65 S 65
S
Sbjct: 88 S 88
>UNIPROTKB|Q74DJ2 [details] [associations]
symbol:GSU1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 28/68 (41%), Positives = 36/68 (52%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
FS G VT II D SKG G V TEEEA++A+ ++G LL RV+ V RP
Sbjct: 23 FSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETLDGALLRNRVITVSVARPQ 82
Query: 66 RRYNTDVP 73
++ P
Sbjct: 83 KQATRPAP 90
>TIGR_CMR|GSU_1324 [details] [associations]
symbol:GSU_1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 28/68 (41%), Positives = 36/68 (52%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
FS G VT II D SKG G V TEEEA++A+ ++G LL RV+ V RP
Sbjct: 23 FSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETLDGALLRNRVITVSVARPQ 82
Query: 66 RRYNTDVP 73
++ P
Sbjct: 83 KQATRPAP 90
>TAIR|locus:2049359 [details] [associations]
symbol:GRP7 "AT2G21660" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
evidence=IEP;RCA] [GO:0010501 "RNA secondary structure unwinding"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IMP;IDA] [GO:0005777
"peroxisome" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA;IMP] [GO:0010043 "response to zinc ion" evidence=IEP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0006833 "water transport" evidence=RCA]
[GO:0006972 "hyperosmotic response" evidence=RCA] [GO:0007030
"Golgi organization" evidence=RCA] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0009266 "response to temperature
stimulus" evidence=RCA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005777 GO:GO:0010119 GO:GO:0000166 GO:GO:0010043
GO:GO:0048046 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003690
GO:GO:0003697 GO:GO:0006406 GO:GO:0010228 eggNOG:COG0724
GO:GO:0000380 HOGENOM:HOG000276232 GO:GO:0010501 GO:GO:0032508
EMBL:AC007119 UniGene:At.22672 UniGene:At.23628 EMBL:Z14987
EMBL:L00648 EMBL:L04172 EMBL:AF428381 EMBL:AY054284 EMBL:AY042826
EMBL:AY072523 EMBL:AK318968 EMBL:AY085214 IPI:IPI00523161
IPI:IPI00542675 PIR:S30147 RefSeq:NP_179760.1 UniGene:At.24279
UniGene:At.72988 ProteinModelPortal:Q03250 SMR:Q03250 IntAct:Q03250
MINT:MINT-1163877 STRING:Q03250 PaxDb:Q03250 PRIDE:Q03250
ProMEX:Q03250 EnsemblPlants:AT2G21660.1 GeneID:816705
KEGG:ath:AT2G21660 TAIR:At2g21660 InParanoid:Q03250 OMA:SQHEDGH
ProtClustDB:CLSN2913158 Genevestigator:Q03250 Uniprot:Q03250
Length = 176
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
AF+Q+G V + II D+ S+G+G VTF E+ + A+ MNG+ LDGR + V+ +
Sbjct: 27 AFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQ 85
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 123 (48.4 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 25/59 (42%), Positives = 39/59 (66%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS++G +I D GK SKG+G V + T E AQKA+ +++GK +DG+VL+V
Sbjct: 215 LKELFSEYGPTESVKVIRDSSGK--SKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV 271
Score = 119 (46.9 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 24/67 (35%), Positives = 44/67 (65%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + FS FG +++A ++++ G+ KG+G + FS+ EEA KA+ EMNG+++ + L V
Sbjct: 318 LKEEFSSFGSISRAKVMVEVGQG--KGFGVICFSSFEEATKAVDEMNGRIVGSKPLQVTL 375
Query: 62 VRPSRRY 68
+ RR+
Sbjct: 376 GQARRRW 382
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 123 (48.4 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 24/58 (41%), Positives = 40/58 (68%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS FG +++A ++M+ G+ KG+G V FS+ EEA KA+ EMNG+++ + L V
Sbjct: 318 LKEEFSLFGSISRAKVMMEVGQG--KGFGVVCFSSFEEASKAVNEMNGRVVGSKTLHV 373
Score = 118 (46.6 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 26/55 (47%), Positives = 36/55 (65%)
Query: 6 FSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS++G +I D GK SKG+G V + T E AQKA+ E++GK +DG+VL V
Sbjct: 219 FSEYGPTESVKVIRDATGK--SKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCV 271
>TAIR|locus:2171539 [details] [associations]
symbol:RPS19 "ribosomal protein S19" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA;NAS] [GO:0015935 "small ribosomal
subunit" evidence=IEA] [GO:0006354 "DNA-dependent transcription,
elongation" evidence=RCA] [GO:0005763 "mitochondrial small
ribosomal subunit" evidence=IDA] InterPro:IPR000504
InterPro:IPR002222 InterPro:IPR005732 InterPro:IPR012677
InterPro:IPR020934 InterPro:IPR023575 Pfam:PF00076 Pfam:PF00203
PRINTS:PR00975 PROSITE:PS00323 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006412
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003735 eggNOG:COG0724
GO:GO:0005763 EMBL:AB018117 Gene3D:3.30.860.10 HAMAP:MF_00531
SUPFAM:SSF54570 TIGRFAMs:TIGR01050 KO:K02965 EMBL:X78035
EMBL:X77989 EMBL:AY045963 EMBL:AY091354 EMBL:Z18203 IPI:IPI00544075
PIR:S71114 RefSeq:NP_568681.1 UniGene:At.5396
ProteinModelPortal:P39697 SMR:P39697 STRING:P39697 PaxDb:P39697
PRIDE:P39697 EnsemblPlants:AT5G47320.1 GeneID:834779
KEGG:ath:AT5G47320 GeneFarm:3993 TAIR:At5g47320 InParanoid:P39697
PhylomeDB:P39697 Genevestigator:P39697 GermOnline:AT5G47320
Uniprot:P39697
Length = 212
Score = 117 (46.2 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 23/53 (43%), Positives = 35/53 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDG 54
+ DAFS F VT+A ++ +K S+GYG V F +E+ A A++ MNG+ L+G
Sbjct: 47 LKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNG 99
>UNIPROTKB|Q3AF33 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 23/57 (40%), Positives = 37/57 (64%)
Query: 7 SQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
S+FG+V A +I++K S+GYG + +E+A+K +T +NGK ++GR L V R
Sbjct: 24 SEFGEVIGARVILEKSTGRSRGYGFIEVR-DEDAEKFMTGLNGKEVEGRQLVVSEAR 79
>TIGR_CMR|CHY_0389 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 23/57 (40%), Positives = 37/57 (64%)
Query: 7 SQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
S+FG+V A +I++K S+GYG + +E+A+K +T +NGK ++GR L V R
Sbjct: 24 SEFGEVIGARVILEKSTGRSRGYGFIEVR-DEDAEKFMTGLNGKEVEGRQLVVSEAR 79
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 114 (45.2 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVL 57
++ AFS FG V++A ++ D S+GYG V F +A+KAL+ M+G+ L R +
Sbjct: 191 VLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAI 247
Score = 30 (15.6 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 58 FVDNVRPSRRYNTDVPL 74
+V N+ P N VPL
Sbjct: 305 YVGNLTPYTTANDVVPL 321
>UNIPROTKB|E1P5S2 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
Length = 373
Score = 121 (47.7 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
M+ F FG++ ++MD SKGYG +TFS E A+KAL ++NG L GR + V
Sbjct: 108 MLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 167
Query: 61 NV 62
+V
Sbjct: 168 HV 169
>ASPGD|ASPL0000078272 [details] [associations]
symbol:AN4330 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001303 eggNOG:COG0724 HOGENOM:HOG000187841 KO:K14573
OrthoDB:EOG4K6KCP EMBL:AACD01000075 OMA:MHALECL RefSeq:XP_661934.1
ProteinModelPortal:Q5B550 STRING:Q5B550
EnsemblFungi:CADANIAT00006131 GeneID:2872127 KEGG:ani:AN4330.2
Uniprot:Q5B550
Length = 724
Score = 125 (49.1 bits), Expect = 7.0e-07, P = 7.0e-07
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+A+ FSQ + A +++D SKGYG VTF+ E+A+ AL E+NG +G+ + V+
Sbjct: 53 LAEHFSQSYVIKHAVVVVDPKTKQSKGYGFVTFADVEDAKAALEELNGSTFEGKKIKVEY 112
Query: 62 VRPSRR 67
+P R
Sbjct: 113 AQPRHR 118
Score = 96 (38.9 bits), Expect = 0.00088, P = 0.00088
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+A F FG+V T+ KG + G+G V ++ A+KAL +NGK +DGR L VD
Sbjct: 167 LAAHFRSFGKVKYVTL-PKKGSQLA-GFGFVVLRGKKNAEKALEAVNGKEVDGRTLAVD 223
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 120 (47.3 bits), Expect = 7.1e-07, P = 7.1e-07
Identities = 28/75 (37%), Positives = 41/75 (54%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FSQFG++ ++ D + S+ +G V F EEAQKA+ MNGK + GR+L+
Sbjct: 207 LQDLFSQFGKMLSVKVMRDNSGH-SRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAG- 264
Query: 62 VRPSRRYNTDVPLAR 76
R +R L R
Sbjct: 265 -RAQKRVERQNELKR 278
Score = 119 (46.9 bits), Expect = 9.1e-07, P = 9.1e-07
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + + D+ + S+G+G V F T E AQ+A+ MNG LL+ R +FV + +
Sbjct: 117 DTFSTFGNILSCKVACDE--HGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFK 174
Query: 64 PSRR 67
SRR
Sbjct: 175 -SRR 177
>TAIR|locus:2044370 [details] [associations]
symbol:AT2G46780 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT022057
IPI:IPI00944264 RefSeq:NP_182201.4 UniGene:At.22279
ProteinModelPortal:Q501B0 SMR:Q501B0 PRIDE:Q501B0
EnsemblPlants:AT2G46780.1 GeneID:819291 KEGG:ath:AT2G46780
TAIR:At2g46780 OMA:FPYSTYG PhylomeDB:Q501B0 ProtClustDB:CLSN2722623
Genevestigator:Q501B0 Uniprot:Q501B0
Length = 336
Score = 120 (47.3 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 24/50 (48%), Positives = 31/50 (62%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
F QFG++ +A +I DK SKGYG VTF E A +A MN ++DGR
Sbjct: 42 FEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNMN-PVIDGR 90
>UNIPROTKB|G3XAP0 [details] [associations]
symbol:RBM23 "RNA binding motif protein 23, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 EMBL:AL135998 UniGene:Hs.4997
HGNC:HGNC:20155 ChiTaRS:RBM23 TIGRFAMs:TIGR01622
ProteinModelPortal:G3XAP0 SMR:G3XAP0 Ensembl:ENST00000542016
ArrayExpress:G3XAP0 Bgee:G3XAP0 Uniprot:G3XAP0
Length = 269
Score = 118 (46.6 bits), Expect = 7.6e-07, P = 7.6e-07
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
M+ F FG++ ++ D SKGYG +TFS E A++AL ++NG L GR + V
Sbjct: 108 MLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVG 167
Query: 61 NVRPSRRYNTDV 72
+V TD+
Sbjct: 168 HVTERLDGGTDI 179
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 124 (48.7 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F++FG +T ++ D TSKG G V FS EA + L EMNGK++ G+ L+V
Sbjct: 344 LRELFAEFGTITSCKVMRDPS-GTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYV 400
Score = 105 (42.0 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+AFS G + + D S+GYG V F TE+ A+ A+ ++NGK+L+ + +FV
Sbjct: 152 EAFSGCGTIVSCKVATDH-MGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFV 206
Score = 103 (41.3 bits), Expect = 0.00014, P = 0.00014
Identities = 19/54 (35%), Positives = 33/54 (61%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVL 57
D F++ QV + D NTS GYG V +S ++A+KA+ ++N L+G+++
Sbjct: 64 DYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKLNYSYLNGKMI 117
>POMBASE|SPBC4F6.14 [details] [associations]
symbol:SPBC4F6.14 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISS;IDA] [GO:0006364
"rRNA processing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC4F6.14 GO:GO:0005730 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724
HSSP:P52298 HOGENOM:HOG000187841 KO:K14573 OrthoDB:EOG4K6KCP
PIR:T40511 RefSeq:NP_596114.1 ProteinModelPortal:O74400
STRING:O74400 EnsemblFungi:SPBC4F6.14.1 GeneID:2540871
KEGG:spo:SPBC4F6.14 OMA:MHALECL NextBio:20801987 Uniprot:O74400
Length = 674
Score = 124 (48.7 bits), Expect = 8.1e-07, P = 8.1e-07
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + FS G + A ++ + ++GYG VTFS E+AQ+A E+ K L GR+L +D
Sbjct: 21 LTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDF 80
Query: 62 VRPSRRYNTD 71
P +R D
Sbjct: 81 ATPRKRSEVD 90
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 121 (47.7 bits), Expect = 8.1e-07, P = 8.1e-07
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVL 57
+ +AF FG V+ A +I D SKGYG V++ EEA++A+ +MNG+ L R +
Sbjct: 151 LREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTI 206
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 121 (47.7 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
M+ F FG++ ++MD SKGYG +TFS E A+KAL ++NG L GR + V
Sbjct: 265 MLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 324
Query: 61 NV 62
+V
Sbjct: 325 HV 326
>TAIR|locus:2006998 [details] [associations]
symbol:AT1G33470 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AK176398 IPI:IPI00533784
RefSeq:NP_174613.2 UniGene:At.17522 UniGene:At.67846
ProteinModelPortal:Q67YS0 SMR:Q67YS0 PaxDb:Q67YS0 PRIDE:Q67YS0
EnsemblPlants:AT1G33470.1 GeneID:840240 KEGG:ath:AT1G33470
TAIR:At1g33470 InParanoid:Q67YS0 OMA:GAQYPFY PhylomeDB:Q67YS0
ProtClustDB:CLSN2680737 ArrayExpress:Q67YS0 Genevestigator:Q67YS0
Uniprot:Q67YS0
Length = 245
Score = 116 (45.9 bits), Expect = 9.8e-07, P = 9.8e-07
Identities = 24/50 (48%), Positives = 30/50 (60%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
F QFG + +A +I DK SKGYG VTF E AQKA + ++DGR
Sbjct: 27 FEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDP-APVIDGR 75
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 120 (47.3 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
F G V A +IM++ S+GYG V F ++ A+KAL EM GK +DGR + +D
Sbjct: 188 FEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEMQGKEIDGRPINLD 242
Score = 97 (39.2 bits), Expect = 0.00031, P = 0.00031
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
+ F ++G V + KG+G V FS+ +EA+ AL MNG+ ++GR +D
Sbjct: 288 NVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRPCRLDFST 347
Query: 64 PSRRYNTD 71
P R NT+
Sbjct: 348 P--RDNTN 353
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 120 (47.3 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
F G V A +IM++ S+GYG V F ++ A+KAL EM GK +DGR + +D
Sbjct: 188 FEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEMQGKEIDGRPINLD 242
Score = 97 (39.2 bits), Expect = 0.00031, P = 0.00031
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
+ F ++G V + KG+G V FS+ +EA+ AL MNG+ ++GR +D
Sbjct: 288 NVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRPCRLDFST 347
Query: 64 PSRRYNTD 71
P R NT+
Sbjct: 348 P--RDNTN 353
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 120 (47.3 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS+FG +T +++ SKG G V FST EEA KA+ +MNGK++ + ++V
Sbjct: 239 LEELFSEFGTITSCKVMVHSN-GISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYV 295
Score = 101 (40.6 bits), Expect = 0.00012, P = 0.00012
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
F +FG++T A ++ D G+ S+ +G V F E A A+ +MNG ++D + L V R
Sbjct: 139 FGEFGEITSAVVMKD-GEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVG--RAQ 195
Query: 66 RRYN 69
R+ N
Sbjct: 196 RKTN 199
>UNIPROTKB|G4MYV6 [details] [associations]
symbol:MGG_11418 "Nucleic acid-binding protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001232
RefSeq:XP_003713424.1 ProteinModelPortal:G4MYV6
EnsemblFungi:MGG_11418T0 GeneID:2676363 KEGG:mgr:MGG_11418
Uniprot:G4MYV6
Length = 279
Score = 117 (46.2 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 28/71 (39%), Positives = 39/71 (54%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV-D 60
+A+AFSQ+G V A + D + SKG+G + F T E AQKA E N GR + V
Sbjct: 89 LAEAFSQYGNVVDAKVARD-ARGLSKGFGFIYFETPEAAQKACEEANNTFWHGRRINVAP 147
Query: 61 NVRPSRRYNTD 71
++ S+ N D
Sbjct: 148 RIKASKPGNRD 158
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 122 (48.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 25/54 (46%), Positives = 38/54 (70%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS +G +T A ++ + G SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPYGVITSAKVMTEGGH--SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 365
Score = 120 (47.3 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 28/75 (37%), Positives = 41/75 (54%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FSQFG++ ++ D + S+ +G V F EEAQKA+ MNGK + GR+L+
Sbjct: 207 LQDLFSQFGKMLSVKVMRDNSGH-SRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAG- 264
Query: 62 VRPSRRYNTDVPLAR 76
R +R L R
Sbjct: 265 -RAQKRVERQNELKR 278
Score = 119 (46.9 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + + D+ + S+G+G V F T E AQ+A+ MNG LL+ R +FV + +
Sbjct: 117 DTFSTFGNILSCKVACDE--HGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFK 174
Query: 64 PSRR 67
SRR
Sbjct: 175 -SRR 177
>RGD|1310071 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
"centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
Length = 524
Score = 121 (47.7 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
M+ F FG++ ++MD SKGYG +TFS E A+KAL ++NG L GR + V
Sbjct: 265 MLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 324
Query: 61 NV 62
+V
Sbjct: 325 HV 326
>UNIPROTKB|F6QIA5 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
Length = 525
Score = 121 (47.7 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
M+ F FG++ ++MD SKGYG +TFS E A+KAL ++NG L GR + V
Sbjct: 265 MLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 324
Query: 61 NV 62
+V
Sbjct: 325 HV 326
>UNIPROTKB|F2Z5I2 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:CU210870
Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
Length = 525
Score = 121 (47.7 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
M+ F FG++ ++MD SKGYG +TFS E A+KAL ++NG L GR + V
Sbjct: 265 MLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 324
Query: 61 NV 62
+V
Sbjct: 325 HV 326
>UNIPROTKB|E1BRU3 [details] [associations]
symbol:LOC100858247 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
Length = 529
Score = 121 (47.7 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
M+ F FG++ ++MD SKGYG +TFS E A+KAL ++NG L GR + V
Sbjct: 265 MLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 324
Query: 61 NV 62
+V
Sbjct: 325 HV 326
>UNIPROTKB|E2R4L0 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
Length = 530
Score = 121 (47.7 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
M+ F FG++ ++MD SKGYG +TFS E A+KAL ++NG L GR + V
Sbjct: 265 MLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 324
Query: 61 NV 62
+V
Sbjct: 325 HV 326
>UNIPROTKB|Q14498 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
Uniprot:Q14498
Length = 530
Score = 121 (47.7 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
M+ F FG++ ++MD SKGYG +TFS E A+KAL ++NG L GR + V
Sbjct: 265 MLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 324
Query: 61 NV 62
+V
Sbjct: 325 HV 326
>MGI|MGI:2157953 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
CleanEx:MM_RBM39 Genevestigator:Q8VH51
GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
Length = 530
Score = 121 (47.7 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
M+ F FG++ ++MD SKGYG +TFS E A+KAL ++NG L GR + V
Sbjct: 265 MLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 324
Query: 61 NV 62
+V
Sbjct: 325 HV 326
>UNIPROTKB|F1MA64 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
Length = 530
Score = 121 (47.7 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
M+ F FG++ ++MD SKGYG +TFS E A+KAL ++NG L GR + V
Sbjct: 265 MLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 324
Query: 61 NV 62
+V
Sbjct: 325 HV 326
>UNIPROTKB|F1M0P4 [details] [associations]
symbol:F1M0P4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570 GO:GO:2000623
IPI:IPI00778598 ProteinModelPortal:F1M0P4
Ensembl:ENSRNOT00000035783 OMA:KHKFEQM Uniprot:F1M0P4
Length = 338
Score = 118 (46.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 25/54 (46%), Positives = 37/54 (68%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G SK +G + FS+ EEA KA+ EMNGK++ + L+V
Sbjct: 47 FSPFGTITSAKVMMEGGH--SKRFGFICFSSHEEAFKAVMEMNGKIVATKPLYV 98
>UNIPROTKB|Q96E39 [details] [associations]
symbol:RBMXL1 "RNA binding motif protein, X-linked-like-1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471097 GO:GO:0030529
eggNOG:COG0724 EMBL:AL139416 HSSP:Q14103 UniGene:Hs.481898
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 KO:K12885 EMBL:AL832554 EMBL:BC012942 IPI:IPI00061178
RefSeq:NP_001156008.1 RefSeq:NP_062556.2 ProteinModelPortal:Q96E39
SMR:Q96E39 IntAct:Q96E39 STRING:Q96E39 PhosphoSite:Q96E39
PaxDb:Q96E39 PRIDE:Q96E39 Ensembl:ENST00000321792
Ensembl:ENST00000399794 GeneID:494115 KEGG:hsa:494115
UCSC:uc001dms.3 CTD:494115 GeneCards:GC01M089446 HGNC:HGNC:25073
neXtProt:NX_Q96E39 PharmGKB:PA165752300 OMA:STIYVEN
PhylomeDB:Q96E39 GenomeRNAi:494115 NextBio:255993
ArrayExpress:Q96E39 Bgee:Q96E39 Uniprot:Q96E39
Length = 390
Score = 119 (46.9 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 22/61 (36%), Positives = 39/61 (63%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV-RP 64
F ++G++ + +I D+ N S+G+ VTF + +A+ A +MNGK LDG+ + V+ +P
Sbjct: 28 FGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKP 87
Query: 65 S 65
S
Sbjct: 88 S 88
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
I AF+ FG+++ A ++ D SKGYG V+F + +A+ A+ M G+ L GR
Sbjct: 74 IKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR 127
>DICTYBASE|DDB_G0290745 [details] [associations]
symbol:pabpc1B "putative polyadenylate binding
protein (PABP)" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0290745 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GenomeReviews:CM000154_GR eggNOG:COG0724 EMBL:AAFI02000169
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
RefSeq:XP_001134510.1 ProteinModelPortal:Q1ZXC2 SMR:Q1ZXC2
EnsemblProtists:DDB0233386 GeneID:8627795 KEGG:ddi:DDB_G0290745
OMA:NAIASIH Uniprot:Q1ZXC2
Length = 814
Score = 123 (48.4 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
M+ D FS FG + + +KG SKGYG V F T + A+KA+ ++NG L+ G+ + V+
Sbjct: 289 MLYDTFSSFGNILSCKVEFEKG--ISKGYGYVHFETNDSAEKAIEKVNGTLILGKPINVE 346
Query: 61 N-VRPSRRYNTD 71
V RY +
Sbjct: 347 RFVSKVERYKVE 358
>TAIR|locus:2159401 [details] [associations]
symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
"copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
Length = 309
Score = 117 (46.2 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 21/59 (35%), Positives = 40/59 (67%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ +AF+++G+V +I+D+ S+G+G VTF++ E A A+ ++G+ L GRV+ V+
Sbjct: 56 LREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVN 114
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 122 (48.0 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 24/58 (41%), Positives = 37/58 (63%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG +T A +++D+ SKG+G V F EEA A+T+MN K++ + L+V
Sbjct: 359 LRDHFSSFGTITSAKVMVDEN-GRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYV 415
Score = 118 (46.6 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + + D N SKGYG V F TE AQ A+ ++NG LL + ++V
Sbjct: 161 VYDTFSLFGNILSCKVATDDEGN-SKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGK 219
Query: 62 VRP 64
+P
Sbjct: 220 FQP 222
Score = 98 (39.6 bits), Expect = 0.00051, P = 0.00051
Identities = 22/72 (30%), Positives = 41/72 (56%)
Query: 6 FSQFGQVTKATIIMD-KGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
FS+FG++T A ++ D +GK KG+G V F+ ++ A +A+ ++N +L+G + R
Sbjct: 258 FSKFGEITSAVVMTDAQGK--PKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRA 315
Query: 65 SRRYNTDVPLAR 76
++ L R
Sbjct: 316 QKKSERSAELKR 327
>UNIPROTKB|H0Y6E7 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX Ensembl:ENST00000419968
Uniprot:H0Y6E7
Length = 292
Score = 116 (45.9 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 21/61 (34%), Positives = 39/61 (63%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV-RP 64
F ++G++ + ++ D+ N S+G+ VTF + +A+ A +MNGK LDG+ + V+ +P
Sbjct: 30 FGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKP 89
Query: 65 S 65
S
Sbjct: 90 S 90
>ZFIN|ZDB-GENE-040426-2852 [details] [associations]
symbol:rbm39a "RNA binding motif protein 39a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2852 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HSSP:P11940
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 HOGENOM:HOG000236253
KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
GeneTree:ENSGT00690000102089 EMBL:BX001056 EMBL:BC044487
IPI:IPI00498221 RefSeq:NP_001012304.1 UniGene:Dr.38353 SMR:Q803H1
Ensembl:ENSDART00000017973 Ensembl:ENSDART00000135435 GeneID:406251
KEGG:dre:406251 CTD:406251 NextBio:20817886 Uniprot:Q803H1
Length = 523
Score = 120 (47.3 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
M+ F FG++ ++MD SKGYG +TFS E A+KAL ++NG L GR + V
Sbjct: 261 MLRGIFEPFGRIDSIQLMMDSETGRSKGYGFITFSDAECAKKALEQLNGFELAGRPMKVG 320
Query: 61 NV 62
+V
Sbjct: 321 HV 322
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 121 (47.7 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
D FS FG + + +D SKGYG V ++ EE AQKA+ ++NG LL+ + ++V
Sbjct: 142 DTFSSFGNIVSCKVAVDSS-GQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 196
Score = 121 (47.7 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 23/58 (39%), Positives = 40/58 (68%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS FG VT + ++ D TSKG G V F+T EEA +A+++++GK+++ + L+V
Sbjct: 334 LKEIFSPFGTVTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYV 390
Score = 111 (44.1 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 20/71 (28%), Positives = 40/71 (56%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AF ++G++T A ++ D G+ SKG+G V F ++A +A+ +NG D + +V
Sbjct: 231 LKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGR 289
Query: 62 VRPSRRYNTDV 72
+ T++
Sbjct: 290 AQKKSERETEL 300
>UNIPROTKB|H3BT71 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX ProteinModelPortal:H3BT71
SMR:H3BT71 Ensembl:ENST00000562646 Bgee:H3BT71 Uniprot:H3BT71
Length = 296
Score = 116 (45.9 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 21/61 (34%), Positives = 39/61 (63%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV-RP 64
F ++G++ + ++ D+ N S+G+ VTF + +A+ A +MNGK LDG+ + V+ +P
Sbjct: 28 FGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKP 87
Query: 65 S 65
S
Sbjct: 88 S 88
>UNIPROTKB|Q32P59 [details] [associations]
symbol:SLIRP "SRA stem-loop-interacting RNA-binding
protein, mitochondrial" species:9913 "Bos taurus" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005634 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 HOGENOM:HOG000276232
EMBL:BC108247 IPI:IPI00713880 RefSeq:NP_001032562.1
UniGene:Bt.56679 ProteinModelPortal:Q32P59 STRING:Q32P59
Ensembl:ENSBTAT00000043035 GeneID:613614 KEGG:bta:613614 CTD:81892
eggNOG:NOG291073 GeneTree:ENSGT00390000008624 HOVERGEN:HBG079935
InParanoid:Q32P59 OMA:SNELREH OrthoDB:EOG4Z62Q4 NextBio:20898668
Uniprot:Q32P59
Length = 111
Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 26/63 (41%), Positives = 35/63 (55%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + F+QFG V K T+ DK KG G + FS+EEE AL + N ++DG L V
Sbjct: 35 LREHFAQFGHVRKCTVPFDKETGFHKGMGWIHFSSEEELHNALQQEN-HVIDGVKLHVQP 93
Query: 62 VRP 64
RP
Sbjct: 94 QRP 96
>DICTYBASE|DDB_G0292698 [details] [associations]
symbol:DDB_G0292698 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0292698 GO:GO:0000166
EMBL:AAFI02000194 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG297815
RefSeq:XP_629578.1 ProteinModelPortal:Q54CU2 STRING:Q54CU2
PRIDE:Q54CU2 EnsemblProtists:DDB0233351 GeneID:8628839
KEGG:ddi:DDB_G0292698 InParanoid:Q54CU2 OMA:DPNTKES Uniprot:Q54CU2
Length = 306
Score = 116 (45.9 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 21/65 (32%), Positives = 39/65 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D F+ G+V TI++D S+G+G VT+S+ +EAQ A+ ++ +DG + V+
Sbjct: 87 LRDTFASIGKVIDCTILLDPNTKESRGFGFVTYSSGDEAQDAIQRLDSTKIDGNTIRVEK 146
Query: 62 VRPSR 66
+ S+
Sbjct: 147 SKRSK 151
>UNIPROTKB|K7GRX3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 InterPro:IPR012604
Pfam:PF08081 EMBL:FP102148 Ensembl:ENSSSCT00000035747
Uniprot:K7GRX3
Length = 306
Score = 116 (45.9 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 21/61 (34%), Positives = 39/61 (63%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV-RP 64
F ++G++ + ++ D+ N S+G+ VTF + +A+ A +MNGK LDG+ + V+ +P
Sbjct: 28 FGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKP 87
Query: 65 S 65
S
Sbjct: 88 S 88
>UNIPROTKB|I3LPP8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 OMA:VTERLDG TIGRFAMs:TIGR01622
GeneTree:ENSGT00690000102089 Ensembl:ENSSSCT00000022566
Uniprot:I3LPP8
Length = 423
Score = 118 (46.6 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
M+ F FG++ ++ D SKGYG +TFS E A++AL ++NG L GR + +
Sbjct: 269 MLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRIG 328
Query: 61 NVRPSRRYNTDV 72
+V +TD+
Sbjct: 329 HVTERLDGSTDI 340
>UNIPROTKB|Q8N7X1 [details] [associations]
symbol:RBMXL3 "RNA-binding motif protein, X-linked-like-3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL589786 EMBL:AK301904 EMBL:AK097568 IPI:IPI00167369
RefSeq:NP_001138818.1 UniGene:Hs.376008 ProteinModelPortal:Q8N7X1
SMR:Q8N7X1 PhosphoSite:Q8N7X1 PaxDb:Q8N7X1 PRIDE:Q8N7X1
Ensembl:ENST00000424776 GeneID:139804 KEGG:hsa:139804
UCSC:uc011mte.1 CTD:139804 GeneCards:GC0XP114423 HGNC:HGNC:26859
neXtProt:NX_Q8N7X1 PharmGKB:PA164725338 eggNOG:NOG331461
HOGENOM:HOG000112105 InParanoid:Q8N7X1 OMA:YEEYRGR
OrthoDB:EOG4ZPDV2 GenomeRNAi:139804 NextBio:84044 Bgee:Q8N7X1
CleanEx:HS_CXorf55 Genevestigator:Q8N7X1 Uniprot:Q8N7X1
Length = 1067
Score = 123 (48.4 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 23/69 (33%), Positives = 42/69 (60%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV-DNVRP 64
F ++G + K ++ D+ N S+G+ VTF + +A+ A +MNGK LDG+ + V ++P
Sbjct: 28 FGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPADAKAAARDMNGKYLDGKAIMVAQTIKP 87
Query: 65 SRRYNTDVP 73
+ + + VP
Sbjct: 88 AFKSSRWVP 96
>TAIR|locus:2032120 [details] [associations]
symbol:AT1G78260 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HSSP:P09651 HOGENOM:HOG000276232 eggNOG:NOG248750 EMBL:AY084982
EMBL:BT030002 IPI:IPI00529893 RefSeq:NP_565175.1 UniGene:At.43623
ProteinModelPortal:Q8LF90 SMR:Q8LF90 STRING:Q8LF90
EnsemblPlants:AT1G78260.1 GeneID:844161 KEGG:ath:AT1G78260
TAIR:At1g78260 InParanoid:Q8LF90 OMA:SPYYYGY PhylomeDB:Q8LF90
ProtClustDB:CLSN2689288 Genevestigator:Q8LF90 Uniprot:Q8LF90
Length = 287
Score = 115 (45.5 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
F QFG++ +A II DK SKGYG VTF + A +A+ + N ++DGR
Sbjct: 37 FEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPN-PVIDGR 85
>UNIPROTKB|Q86U06 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 eggNOG:COG0724 EMBL:AL135998
EMBL:AF087905 EMBL:AF275678 EMBL:AK001344 EMBL:AL834198
EMBL:BX161440 EMBL:BC002566 EMBL:BC024208 IPI:IPI00168431
IPI:IPI00376960 IPI:IPI00376962 IPI:IPI00376963 IPI:IPI00386141
RefSeq:NP_001070819.1 RefSeq:NP_001070820.1 RefSeq:NP_060577.3
UniGene:Hs.4997 PDB:2CQ4 PDB:2DNZ PDBsum:2CQ4 PDBsum:2DNZ
ProteinModelPortal:Q86U06 SMR:Q86U06 IntAct:Q86U06
MINT:MINT-1382566 STRING:Q86U06 PhosphoSite:Q86U06 DMDM:34925229
PaxDb:Q86U06 PRIDE:Q86U06 DNASU:55147 Ensembl:ENST00000346528
Ensembl:ENST00000359890 Ensembl:ENST00000399922 GeneID:55147
KEGG:hsa:55147 UCSC:uc001whg.3 UCSC:uc001whh.3 UCSC:uc001whi.3
UCSC:uc001whk.1 CTD:55147 GeneCards:GC14M023369 HGNC:HGNC:20155
HPA:HPA004144 neXtProt:NX_Q86U06 PharmGKB:PA134974852
HOVERGEN:HBG057646 InParanoid:Q86U06 OMA:VTERLDG PhylomeDB:Q86U06
ChiTaRS:RBM23 EvolutionaryTrace:Q86U06 GenomeRNAi:55147
NextBio:58862 ArrayExpress:Q86U06 Bgee:Q86U06 CleanEx:HS_RBM23
Genevestigator:Q86U06 GermOnline:ENSG00000100461 TIGRFAMs:TIGR01622
Uniprot:Q86U06
Length = 439
Score = 118 (46.6 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
M+ F FG++ ++ D SKGYG +TFS E A++AL ++NG L GR + V
Sbjct: 278 MLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVG 337
Query: 61 NVRPSRRYNTDV 72
+V TD+
Sbjct: 338 HVTERLDGGTDI 349
>UNIPROTKB|E2QVA8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01622 ProteinModelPortal:E2QVA8
Ensembl:ENSCAFT00000017824 Uniprot:E2QVA8
Length = 440
Score = 118 (46.6 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
M+ F FG++ ++ D SKGYG +TFS E A++AL ++NG L GR + V
Sbjct: 279 MLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVG 338
Query: 61 NVRPSRRYNTDV 72
+V TD+
Sbjct: 339 HVTERLDGGTDI 350
>TAIR|locus:2196521 [details] [associations]
symbol:AT1G22330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AC068562 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P09651 HOGENOM:HOG000276232
ProtClustDB:CLSN2689288 IPI:IPI00540466 PIR:B86356
RefSeq:NP_564168.2 UniGene:At.41608 ProteinModelPortal:Q9LME7
SMR:Q9LME7 STRING:Q9LME7 PRIDE:Q9LME7 EnsemblPlants:AT1G22330.1
GeneID:838839 KEGG:ath:AT1G22330 TAIR:At1g22330 InParanoid:Q9LME7
OMA:TESHAPQ PhylomeDB:Q9LME7 Genevestigator:Q9LME7 Uniprot:Q9LME7
Length = 291
Score = 115 (45.5 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
F QFG++ +A II DK SKGYG VTF + A +A+ + N ++DGR
Sbjct: 37 FDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPN-PVIDGR 85
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 117 (46.2 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 1 MIADAFSQ-FGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
M++D F +G V A +++D+ SKGYG V F+ E E +A+TEMNG+ R
Sbjct: 169 MLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTR 224
>POMBASE|SPAC25G10.01 [details] [associations]
symbol:SPAC25G10.01 "RNA-binding protein" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC25G10.01 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG297815 PIR:T38372
RefSeq:XP_001713104.1 ProteinModelPortal:Q10422
EnsemblFungi:SPAC25G10.01.1 GeneID:3361412 KEGG:spo:SPAC25G10.01
OMA:ERAVEAN OrthoDB:EOG4KPXM5 NextBio:20811463 Uniprot:Q10422
Length = 297
Score = 115 (45.5 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
FS+FG VT I+ + S+G+G ++FST EEA A+ +N + GRVL V + S
Sbjct: 121 FSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKAKRS 180
Query: 66 RRYN 69
R ++
Sbjct: 181 RPHS 184
>UNIPROTKB|F1NZD3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0070062 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006366 GO:GO:0006509 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0000381 GeneTree:ENSGT00700000104336
InterPro:IPR012604 Pfam:PF08081 OMA:PFFKGMS EMBL:AADN02013316
EMBL:AADN02013317 IPI:IPI00575141 Ensembl:ENSGALT00000010428
Uniprot:F1NZD3
Length = 385
Score = 116 (45.9 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 21/61 (34%), Positives = 39/61 (63%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV-RP 64
F ++G++ + ++ D+ N S+G+ VTF + +A+ A +MNGK LDG+ + V+ +P
Sbjct: 28 FGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKP 87
Query: 65 S 65
S
Sbjct: 88 S 88
>UNIPROTKB|F1RQ90 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071347 "cellular response to interleukin-1"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070062 "extracellular vesicular exosome"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=IEA] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0001047 "core promoter binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0070062
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0000381
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
CTD:27316 KO:K12885 OMA:PFFKGMS EMBL:FP102148 RefSeq:NP_001231025.1
UniGene:Ssc.97220 Ensembl:ENSSSCT00000013889
Ensembl:ENSSSCT00000034598 GeneID:100158042 KEGG:ssc:100158042
Uniprot:F1RQ90
Length = 390
Score = 116 (45.9 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 21/61 (34%), Positives = 39/61 (63%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV-RP 64
F ++G++ + ++ D+ N S+G+ VTF + +A+ A +MNGK LDG+ + V+ +P
Sbjct: 28 FGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKP 87
Query: 65 S 65
S
Sbjct: 88 S 88
>RGD|1565256 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X-linked" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal
complex" evidence=IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=IMP] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISO] [GO:0044530 "supraspliceosomal complex" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0070062
"extracellular vesicular exosome" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0071347 "cellular
response to interleukin-1" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1565256 GO:GO:0045893 GO:GO:0000166 GO:GO:0003727
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681 eggNOG:COG0724
GO:GO:0006376 EMBL:CH474106 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK
EMBL:BC097479 IPI:IPI00370207 RefSeq:NP_001020834.1
UniGene:Rn.229269 ProteinModelPortal:Q4V898 SMR:Q4V898
STRING:Q4V898 PhosphoSite:Q4V898 PRIDE:Q4V898
Ensembl:ENSRNOT00000001154 GeneID:302855 KEGG:rno:302855
InParanoid:Q4V898 NextBio:650249 Genevestigator:Q4V898
Uniprot:Q4V898
Length = 390
Score = 116 (45.9 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 21/61 (34%), Positives = 39/61 (63%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV-RP 64
F ++G++ + ++ D+ N S+G+ VTF + +A+ A +MNGK LDG+ + V+ +P
Sbjct: 28 FGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKP 87
Query: 65 S 65
S
Sbjct: 88 S 88
>UNIPROTKB|D3JUI8 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9913 "Bos taurus" [GO:0071347
"cellular response to interleukin-1" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0070062
"extracellular vesicular exosome" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0044530 "supraspliceosomal complex"
evidence=IEA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001047 "core promoter
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:DAAA02067753
EMBL:GU304600 IPI:IPI00706784 RefSeq:NP_001165510.1 UniGene:Bt.7342
Ensembl:ENSBTAT00000017696 GeneID:509591 KEGG:bta:509591
NextBio:20869035 Uniprot:D3JUI8
Length = 391
Score = 116 (45.9 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 21/61 (34%), Positives = 39/61 (63%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV-RP 64
F ++G++ + ++ D+ N S+G+ VTF + +A+ A +MNGK LDG+ + V+ +P
Sbjct: 28 FGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKP 87
Query: 65 S 65
S
Sbjct: 88 S 88
>UNIPROTKB|P38159 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0044530 "supraspliceosomal complex" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IDA] [GO:0071347 "cellular response to interleukin-1"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IDA] [GO:0005719 "nuclear
euchromatin" evidence=IDA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 Reactome:REACT_1675 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0000398
GO:GO:0071013 EMBL:AL683813 EMBL:CH471150 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:Z23064 EMBL:AF266723
EMBL:AF266720 EMBL:AF266721 EMBL:AF266722 EMBL:AY464692
EMBL:AK096015 EMBL:AK304868 EMBL:BC006550 EMBL:BC007435
IPI:IPI00304692 IPI:IPI00552938 RefSeq:NP_001158275.1
RefSeq:NP_002130.2 UniGene:Hs.380118 UniGene:Hs.710162
ProteinModelPortal:P38159 SMR:P38159 DIP:DIP-34447N IntAct:P38159
MINT:MINT-5000999 STRING:P38159 PhosphoSite:P38159 DMDM:23503093
SWISS-2DPAGE:P38159 PaxDb:P38159 PRIDE:P38159 DNASU:27316
Ensembl:ENST00000320676 Ensembl:ENST00000431446 GeneID:27316
KEGG:hsa:27316 UCSC:uc004fad.1 GeneCards:GC0XM135951 HGNC:HGNC:9910
MIM:300199 neXtProt:NX_P38159 PharmGKB:PA34277 HOGENOM:HOG000070250
InParanoid:P38159 PhylomeDB:P38159 ChiTaRS:RBMX GenomeRNAi:27316
NextBio:50322 ArrayExpress:P38159 Bgee:P38159 CleanEx:HS_RBMX
Genevestigator:P38159 GermOnline:ENSG00000147274 Uniprot:P38159
Length = 391
Score = 116 (45.9 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 21/61 (34%), Positives = 39/61 (63%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV-RP 64
F ++G++ + ++ D+ N S+G+ VTF + +A+ A +MNGK LDG+ + V+ +P
Sbjct: 28 FGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKP 87
Query: 65 S 65
S
Sbjct: 88 S 88
>UNIPROTKB|A5A6M3 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9598 "Pan troglodytes" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 EMBL:AB222151 RefSeq:NP_001128678.1 UniGene:Ptr.2579
ProteinModelPortal:A5A6M3 SMR:A5A6M3 PRIDE:A5A6M3 GeneID:738482
KEGG:ptr:738482 NextBio:20905775 Uniprot:A5A6M3
Length = 391
Score = 116 (45.9 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 21/61 (34%), Positives = 39/61 (63%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV-RP 64
F ++G++ + ++ D+ N S+G+ VTF + +A+ A +MNGK LDG+ + V+ +P
Sbjct: 28 FGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKP 87
Query: 65 S 65
S
Sbjct: 88 S 88
>UNIPROTKB|Q4R7F0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9541 "Macaca fascicularis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AB168869 ProteinModelPortal:Q4R7F0 SMR:Q4R7F0
Uniprot:Q4R7F0
Length = 391
Score = 116 (45.9 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 21/61 (34%), Positives = 39/61 (63%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV-RP 64
F ++G++ + ++ D+ N S+G+ VTF + +A+ A +MNGK LDG+ + V+ +P
Sbjct: 28 FGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKP 87
Query: 65 S 65
S
Sbjct: 88 S 88
>MGI|MGI:1343044 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X chromosome"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005719 "nuclear euchromatin" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006509 "membrane protein ectodomain proteolysis" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0070062 "extracellular
vesicular exosome" evidence=ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:0071347 "cellular response to
interleukin-1" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343044
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
EMBL:CH466583 HSSP:Q61474 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 ChiTaRS:RBMX EMBL:AJ237846
EMBL:AJ237847 EMBL:AK087940 EMBL:AK135164 EMBL:AK165006
EMBL:AL672106 EMBL:BC003710 IPI:IPI00124979 RefSeq:NP_001160095.1
RefSeq:NP_035382.1 UniGene:Mm.28275 ProteinModelPortal:Q9WV02
SMR:Q9WV02 IntAct:Q9WV02 STRING:Q9WV02 PhosphoSite:Q9WV02
PRIDE:Q9WV02 Ensembl:ENSMUST00000114726 Ensembl:ENSMUST00000114730
Ensembl:ENSMUST00000140384 GeneID:19655 KEGG:mmu:19655
UCSC:uc009thi.2 InParanoid:Q9R0Y0 NextBio:296930 Bgee:Q9WV02
Genevestigator:Q9WV02 Uniprot:Q9WV02
Length = 391
Score = 116 (45.9 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 21/61 (34%), Positives = 39/61 (63%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV-RP 64
F ++G++ + ++ D+ N S+G+ VTF + +A+ A +MNGK LDG+ + V+ +P
Sbjct: 28 FGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKP 87
Query: 65 S 65
S
Sbjct: 88 S 88
>UNIPROTKB|E2R068 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OMA:PFFKGMS EMBL:AAEX03026954 Ensembl:ENSCAFT00000030124
Uniprot:E2R068
Length = 392
Score = 116 (45.9 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 21/61 (34%), Positives = 39/61 (63%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV-RP 64
F ++G++ + ++ D+ N S+G+ VTF + +A+ A +MNGK LDG+ + V+ +P
Sbjct: 29 FGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKP 88
Query: 65 S 65
S
Sbjct: 89 S 89
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 119 (46.9 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 21/58 (36%), Positives = 41/58 (70%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS++G VT + ++++ + S+G+G V +S EEA +AL+EMNGK++ + L++
Sbjct: 348 LKEMFSEYGNVTSSKVMLNP-QGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYI 404
Score = 117 (46.2 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 27/75 (36%), Positives = 40/75 (53%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV- 62
+ FS FG + + MD SKGYG V F EE AQ A+ ++NG L++ + +FV +
Sbjct: 154 ETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFI 212
Query: 63 -RPSRRYNTDVPLAR 76
R R + + P R
Sbjct: 213 RRQERARDENTPTPR 227
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 119 (46.9 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 24/58 (41%), Positives = 37/58 (63%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F+ FG +T ++ D S+G G V FST EEA +A+TEMNGK++ + L+V
Sbjct: 343 LREHFAPFGTITSCKVMRDPS-GVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYV 399
Score = 113 (44.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
F +FG VT + +IM G+ SKG+G V F ++A +A+ +NGK D + FV +
Sbjct: 244 FGEFG-VTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKK 302
Query: 66 RRYNTDV 72
T++
Sbjct: 303 SERETEL 309
Score = 111 (44.1 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 27/66 (40%), Positives = 39/66 (59%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD-NV 62
+AF+Q GQV + D S GYG V ++T ++A +AL E+N L+GR + V +V
Sbjct: 63 EAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELNFMALNGRAIRVMYSV 122
Query: 63 R-PSRR 67
R PS R
Sbjct: 123 RDPSLR 128
Score = 106 (42.4 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ FS FG + + +D SKGYG V + T+E AQ A+ ++NG LL+ + ++V
Sbjct: 151 ETFSAFGPILSCKVAVDPS-GQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 118 (46.6 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 25/59 (42%), Positives = 40/59 (67%)
Query: 2 IADAFSQFGQVTKATIIM-DKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F+ +G +T A ++ + GK SKG+G V FST EEA KA+TE N +++ G+ L+V
Sbjct: 338 LEEEFAPYGTITSAKVMRTENGK--SKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYV 394
Score = 107 (42.7 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 4 DAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV 62
D FS FG + + I D+ GK SKG+G V F E A++A+ +NG LL+G+ ++V
Sbjct: 144 DTFSVFGDILSSKIATDENGK--SKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAP- 200
Query: 63 RPSRRYNTDVPLARLKIH 80
SR+ D L K H
Sbjct: 201 HLSRK-ERDSQLEETKAH 217
>UNIPROTKB|Q6IRQ4 [details] [associations]
symbol:rbmx "RNA-binding motif protein, X chromosome"
species:8355 "Xenopus laevis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314
InterPro:IPR012604 Pfam:PF08081 CTD:27316 KO:K12885 EMBL:BC070649
RefSeq:NP_001084981.1 UniGene:Xl.25221 HSSP:P08579
ProteinModelPortal:Q6IRQ4 SMR:Q6IRQ4 GeneID:432041 KEGG:xla:432041
Xenbase:XB-GENE-6078824 Uniprot:Q6IRQ4
Length = 370
Score = 115 (45.5 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 22/61 (36%), Positives = 39/61 (63%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV-RP 64
F ++G+V + ++ D+ N S+G+ VTF + +A+ A E+NGK LDG+ + V+ +P
Sbjct: 28 FCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAARELNGKALDGKPIKVEQATKP 87
Query: 65 S 65
S
Sbjct: 88 S 88
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 110 (43.8 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
I AF+ FG+++ A ++ D SKGYG V+F + +A+ A+ +M G+ L GR
Sbjct: 122 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 175
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 114 (45.2 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 25/69 (36%), Positives = 37/69 (53%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
FS G+V A +I DK S GYG V + T ++A++A++ +NG L + + V RPS
Sbjct: 40 FSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPS 99
Query: 66 RRYNTDVPL 74
D L
Sbjct: 100 SEVIKDANL 108
Score = 102 (41.0 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F FG VT +I D N KG+G VT + EEA A+ +NG L ++L V
Sbjct: 264 FGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQV 317
Score = 93 (37.8 bits), Expect = 0.00061, P = 0.00061
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNG 49
+ D FS+FG++ + +++D+ S+G + F EA++A+T NG
Sbjct: 122 VEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 114 (45.2 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 25/69 (36%), Positives = 37/69 (53%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
FS G+V A +I DK S GYG V + T ++A++A++ +NG L + + V RPS
Sbjct: 40 FSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPS 99
Query: 66 RRYNTDVPL 74
D L
Sbjct: 100 SEVIKDANL 108
Score = 102 (41.0 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F FG VT +I D N KG+G VT + EEA A+ +NG L ++L V
Sbjct: 264 FGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQV 317
Score = 93 (37.8 bits), Expect = 0.00061, P = 0.00061
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNG 49
+ D FS+FG++ + +++D+ S+G + F EA++A+T NG
Sbjct: 122 VEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
>UNIPROTKB|A9UMT9 [details] [associations]
symbol:LOC100135403 "LOC100135403 protein" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081
EMBL:BC157792 UniGene:Str.67350 ProteinModelPortal:A9UMT9
STRING:A9UMT9 Uniprot:A9UMT9
Length = 375
Score = 115 (45.5 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 22/61 (36%), Positives = 39/61 (63%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV-RP 64
F ++G+V + ++ D+ N S+G+ VTF + +A+ A E+NGK LDG+ + V+ +P
Sbjct: 28 FCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAARELNGKALDGKPIKVEQATKP 87
Query: 65 S 65
S
Sbjct: 88 S 88
>ZFIN|ZDB-GENE-030131-579 [details] [associations]
symbol:rbmx "RNA binding motif protein, X-linked"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0044530 "supraspliceosomal complex" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISS]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0051260 "protein homooligomerization"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0071347 "cellular response to interleukin-1" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-579
GO:GO:0007275 GO:GO:0008380 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HSSP:Q14103 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AJ717349 EMBL:AY394938 EMBL:AL929434
EMBL:BC049509 EMBL:BC071326 IPI:IPI00509177 RefSeq:NP_997763.1
UniGene:Dr.76840 ProteinModelPortal:Q7ZWA3 SMR:Q7ZWA3 STRING:Q7ZWA3
PRIDE:Q7ZWA3 Ensembl:ENSDART00000007927 Ensembl:ENSDART00000131024
GeneID:321860 KEGG:dre:321860 CTD:27316 InParanoid:Q6TLG7 KO:K12885
OMA:PFFKGMS OrthoDB:EOG4CNQSK NextBio:20807559 ArrayExpress:Q7ZWA3
Bgee:Q7ZWA3 Uniprot:Q7ZWA3
Length = 379
Score = 115 (45.5 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 21/55 (38%), Positives = 37/55 (67%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
FS+FG++++ ++ D+ N S+G+ VT+ +A+ A EMNGK LDG+ + V+
Sbjct: 28 FSKFGRISEVLLMKDRETNKSRGFAFVTYENPGDAKDAAREMNGKPLDGKPIKVE 82
>MGI|MGI:1343045 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X linked-like-1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006376 "mRNA splice site
selection" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=ISO]
[GO:0051260 "protein homooligomerization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1343045 GO:GO:0008380 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682 GO:GO:0006366
GO:GO:0006509 GO:GO:0001047 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HSSP:Q61474
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
CTD:494115 EMBL:AF031568 EMBL:AK041927 EMBL:BC011441 EMBL:BC089350
IPI:IPI00663587 RefSeq:NP_001239018.1 RefSeq:NP_033059.2
UniGene:Mm.24718 ProteinModelPortal:Q91VM5 SMR:Q91VM5 IntAct:Q91VM5
STRING:Q91VM5 PhosphoSite:Q91VM5 PaxDb:Q91VM5 PRIDE:Q91VM5
Ensembl:ENSMUST00000049245 GeneID:19656 KEGG:mmu:19656
UCSC:uc009mhz.1 InParanoid:Q91VM5 OMA:ILLMKDR OrthoDB:EOG4001KF
NextBio:296934 Bgee:Q91VM5 Genevestigator:Q91VM5 Uniprot:Q91VM5
Length = 388
Score = 115 (45.5 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 21/61 (34%), Positives = 39/61 (63%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV-RP 64
F ++G++ + ++ D+ N S+G+ VTF + +A+ A +MNGK LDG+ + V+ +P
Sbjct: 28 FGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKP 87
Query: 65 S 65
S
Sbjct: 88 S 88
>UNIPROTKB|G4MY51 [details] [associations]
symbol:MGG_01274 "RNA-binding protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CM001232 RefSeq:XP_003714189.1 EnsemblFungi:MGG_01274T0
GeneID:2679440 KEGG:mgr:MGG_01274 Uniprot:G4MY51
Length = 412
Score = 115 (45.5 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 27/74 (36%), Positives = 42/74 (56%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AFS++ V K+ +I DK N SKGYG V+FS ++ +A EMNGK + +
Sbjct: 289 AFSRWKSVQKSKVIRDKRTNKSKGYGFVSFSDPDDFFQAAKEMNGKYIQSHPV------T 342
Query: 65 SRRYNTDVPLARLK 78
R+ NT++ + +K
Sbjct: 343 CRKANTEIKVTNVK 356
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 115 (45.5 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
F G V A +I ++G + S+GYG V F + A+KA+ EM GK +DGR + D
Sbjct: 188 FEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCD 242
Score = 94 (38.1 bits), Expect = 0.00069, P = 0.00069
Identities = 24/70 (34%), Positives = 36/70 (51%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
I + F++ G+V I KG+G V FS E+A+KAL + G+ +D R + +D
Sbjct: 283 IFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDF 342
Query: 62 VRPSRRYNTD 71
P R N D
Sbjct: 343 SSP--RPNND 350
>TAIR|locus:2083810 [details] [associations]
symbol:PSRP2 "plastid-specific ribosomal protein 2"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
targeting to chloroplast" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
Genevestigator:Q8VYM4 Uniprot:Q8VYM4
Length = 253
Score = 111 (44.1 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 22/60 (36%), Positives = 38/60 (63%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
M+ + FS+ G+V A + G + S G+G VTFS+EE+ + A+ +N LL+G+ + V+
Sbjct: 192 MLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVN 251
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 113 (44.8 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 25/69 (36%), Positives = 36/69 (52%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
FS G+V A +I DK S GYG V + T ++A++A+ +NG L + + V RPS
Sbjct: 40 FSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPS 99
Query: 66 RRYNTDVPL 74
D L
Sbjct: 100 SEVIKDANL 108
Score = 102 (41.0 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F FG VT +I D N KG+G VT + EEA A+ +NG L ++L V
Sbjct: 264 FGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQV 317
Score = 93 (37.8 bits), Expect = 0.00061, P = 0.00061
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNG 49
+ D FS+FG++ + +++D+ S+G + F EA++A+T NG
Sbjct: 122 VEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNFNG 169
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 113 (44.8 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 25/69 (36%), Positives = 36/69 (52%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
FS G+V A +I DK S GYG V + T ++A++A+ +NG L + + V RPS
Sbjct: 40 FSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPS 99
Query: 66 RRYNTDVPL 74
D L
Sbjct: 100 SEVIKDANL 108
Score = 102 (41.0 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F FG VT +I D N KG+G VT + EEA A+ +NG L ++L V
Sbjct: 264 FGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQV 317
Score = 93 (37.8 bits), Expect = 0.00061, P = 0.00061
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNG 49
+ D FS+FG++ + +++D+ S+G + F EA++A+T NG
Sbjct: 122 VEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 113 (44.8 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 25/69 (36%), Positives = 36/69 (52%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
FS G+V A +I DK S GYG V + T ++A++A+ +NG L + + V RPS
Sbjct: 40 FSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPS 99
Query: 66 RRYNTDVPL 74
D L
Sbjct: 100 SEVIKDANL 108
Score = 102 (41.0 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F FG VT +I D N KG+G VT + EEA A+ +NG L ++L V
Sbjct: 264 FGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQV 317
Score = 93 (37.8 bits), Expect = 0.00061, P = 0.00061
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNG 49
+ D FS+FG++ + +++D+ S+G + F EA++A+T NG
Sbjct: 122 VEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 113 (44.8 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 23/64 (35%), Positives = 41/64 (64%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD--NVR 63
FS+ G+V +A ++ D+ S+G+G VT S +E +A++ ++G+ L+GR + V+ R
Sbjct: 264 FSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323
Query: 64 PSRR 67
P RR
Sbjct: 324 PPRR 327
Score = 101 (40.6 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 23/63 (36%), Positives = 38/63 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+A F Q G V A +I ++ + S+G+G VT S+ +EA+ A+ + N L+GR+L V+
Sbjct: 166 LAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNK 225
Query: 62 VRP 64
P
Sbjct: 226 AAP 228
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 114 (45.2 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 24/59 (40%), Positives = 38/59 (64%)
Query: 2 IADAFSQFGQVTKATIIMD-KGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS +G +I D GK SKG+G V + T E AQKA+ +++GK ++G+VL+V
Sbjct: 215 LKEIFSGYGPTESVKVIRDASGK--SKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYV 271
Score = 112 (44.5 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 22/58 (37%), Positives = 39/58 (67%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS FG +++A ++++ G+ KG+G V FS+ E+A KA+ EMNG+ + + L V
Sbjct: 318 LKEEFSSFGSISRAKVMVEVGQG--KGFGVVCFSSFEDATKAVDEMNGRTVGSKPLHV 373
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 113 (44.8 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 25/69 (36%), Positives = 36/69 (52%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
FS G+V A +I DK S GYG V + T ++A++A+ +NG L + + V RPS
Sbjct: 48 FSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPS 107
Query: 66 RRYNTDVPL 74
D L
Sbjct: 108 SEVIKDANL 116
Score = 102 (41.0 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F FG VT +I D N KG+G VT + EEA A+ +NG L ++L V
Sbjct: 272 FGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQV 325
Score = 93 (37.8 bits), Expect = 0.00064, P = 0.00064
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNG 49
+ D FS+FG++ + +++D+ S+G + F EA++A+T NG
Sbjct: 130 VEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 177
>UNIPROTKB|H0YBN4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000523555
Uniprot:H0YBN4
Length = 175
Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 9 FGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRY 68
F + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV + +
Sbjct: 69 FDVIKGKPVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER 126
Query: 69 NTDVPLARLK 78
++ AR K
Sbjct: 127 EAELG-ARAK 135
>UNIPROTKB|K7ELT6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
Uniprot:K7ELT6
Length = 135
Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 17/50 (34%), Positives = 33/50 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKL 51
+ FS++GQ+++ ++ D+ S+G+G VTF ++A+ A+ MNGK+
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKV 71
>UNIPROTKB|K7GQZ8 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
Length = 88
Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS+ G V ++ D+ KGYG + +E A A+ +NG+ GR L VDN
Sbjct: 13 LKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 72
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 113 (44.8 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 20/51 (39%), Positives = 34/51 (66%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
AF+ FG+++ A ++ D SKGYG ++F + +A+ A+ +MNG+ L GR
Sbjct: 116 AFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGR 166
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 113 (44.8 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 25/69 (36%), Positives = 36/69 (52%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
FS G+V A +I DK S GYG V + T ++A++A+ +NG L + + V RPS
Sbjct: 67 FSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPS 126
Query: 66 RRYNTDVPL 74
D L
Sbjct: 127 SEVIKDANL 135
Score = 102 (41.0 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F FG VT +I D N KG+G VT + EEA A+ +NG L ++L V
Sbjct: 291 FGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQV 344
Score = 93 (37.8 bits), Expect = 0.00070, P = 0.00070
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNG 49
+ D FS+FG++ + +++D+ S+G + F EA++A+T NG
Sbjct: 149 VEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 196
>SGD|S000000517 [details] [associations]
symbol:GBP2 "Poly(A+) RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0000781 "chromosome, telomeric
region" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IMP;IPI] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0005694 "chromosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=IGI;IPI] [GO:0000723 "telomere maintenance"
evidence=IGI;IMP;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000000517 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:X59720 EMBL:BK006937
GO:GO:0003723 GO:GO:0000781 GO:GO:0000723 GO:GO:0042162
GO:GO:0010494 eggNOG:COG0724 GO:GO:0016973 EMBL:AY692807 PIR:S19338
RefSeq:NP_009916.1 ProteinModelPortal:P25555 SMR:P25555
DIP:DIP-2735N IntAct:P25555 MINT:MINT-481140 STRING:P25555
PaxDb:P25555 PeptideAtlas:P25555 EnsemblFungi:YCL011C GeneID:850346
KEGG:sce:YCL011C CYGD:YCL011c GeneTree:ENSGT00410000025635
HOGENOM:HOG000111155 OMA:ATHENTE OrthoDB:EOG4F21C2 NextBio:965800
Genevestigator:P25555 GermOnline:YCL011C Uniprot:P25555
Length = 427
Score = 114 (45.2 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D F + G V +A + +D S+G+GSV + TE+E +A+ NG ++GRVL V
Sbjct: 235 LKDMFKECGHVLRADVELDFN-GFSRGFGSVIYPTEDEMIRAIDTFNGMEVEGRVLEVRE 293
Query: 62 VRPSRRYNTD 71
R ++R N D
Sbjct: 294 GRFNKRKNND 303
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 117 (46.2 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 6 FSQFGQVTKATIIMD-KGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
F +FG++T AT+ D +GK S+G+G V FST E AQ A+ EMN K + + L+V R
Sbjct: 243 FEKFGEITSATLSRDSEGK--SRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVG--RA 298
Query: 65 SRRYNTDVPLAR 76
+++ + L +
Sbjct: 299 QKKHEREEELRK 310
Score = 101 (40.6 bits), Expect = 0.00026, P = 0.00026
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
D F+ FG + + D+ SKGYG V + T E A A+ +NG LL+ + +FV
Sbjct: 148 DTFAAFGNILSCKVAQDEF-GVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFV 202
Score = 98 (39.6 bits), Expect = 0.00055, P = 0.00055
Identities = 18/34 (52%), Positives = 28/34 (82%)
Query: 26 SKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
SKG+G V FS+ +EA KA+TEMN ++++G+ L+V
Sbjct: 416 SKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYV 449
>TAIR|locus:2094098 [details] [associations]
symbol:RBP47B "RNA-binding protein 47B" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0042991 "transcription
factor import into nucleus" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AP000419 GO:GO:0010494 eggNOG:COG0724 HSSP:P09651
GO:GO:0008143 HOGENOM:HOG000186228 EMBL:AK226472 EMBL:BT026489
EMBL:AY084821 IPI:IPI00522174 IPI:IPI00785888 RefSeq:NP_188544.1
UniGene:At.8226 ProteinModelPortal:Q0WW84 SMR:Q0WW84 STRING:Q0WW84
PaxDb:Q0WW84 PRIDE:Q0WW84 EnsemblPlants:AT3G19130.1 GeneID:821447
KEGG:ath:AT3G19130 TAIR:At3g19130 InParanoid:Q0WW84 OMA:RAVENGP
PhylomeDB:Q0WW84 ProtClustDB:CLSN2913615 Genevestigator:Q0WW84
Uniprot:Q0WW84
Length = 435
Score = 114 (45.2 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 25/67 (37%), Positives = 35/67 (52%)
Query: 1 MIADAFS-QFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
++ + FS ++ V A +++D SKGYG V F E E +ALTEMNG R + V
Sbjct: 217 LLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRV 276
Query: 60 DNVRPSR 66
P R
Sbjct: 277 GIATPKR 283
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 112 (44.5 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 24/69 (34%), Positives = 36/69 (52%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
FS G++ A +I DK S GYG V + T ++A++A+ +NG L + + V RPS
Sbjct: 40 FSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPS 99
Query: 66 RRYNTDVPL 74
D L
Sbjct: 100 SEVIKDANL 108
Score = 103 (41.3 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F FG VT +I D N KG+G VT + EEA A+ +NG L ++L V
Sbjct: 264 FGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIASLNGYRLGDKILQV 317
>TAIR|locus:2019622 [details] [associations]
symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
"ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
Length = 289
Score = 111 (44.1 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 23/59 (38%), Positives = 41/59 (69%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ +AFS++G+V A II+D+ S+G+ VTF++ EEA A+ +++G+ L GR + V+
Sbjct: 50 LREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM-QLDGQDLHGRRIRVN 107
>FB|FBgn0085383 [details] [associations]
symbol:CG34354 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GeneTree:ENSGT00680000099967
KO:K13201 RefSeq:NP_001097953.1 UniGene:Dm.16369
ProteinModelPortal:A8JPX0 SMR:A8JPX0 EnsemblMetazoa:FBtr0112564
GeneID:5740528 KEGG:dme:Dmel_CG34354 UCSC:CG34354-RA
FlyBase:FBgn0085383 InParanoid:A8JPX0 OMA:KDAFTPF OrthoDB:EOG4FFBJQ
PhylomeDB:A8JPX0 GenomeRNAi:5740528 NextBio:20891566 Bgee:A8JPX0
Uniprot:A8JPX0
Length = 525
Score = 115 (45.5 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
+ DAF+ FG+++ ++ D SKGYG V+F + EA+ A+T MNG+ L R
Sbjct: 112 LKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITAMNGQWLGSR 165
>WB|WBGene00007396 [details] [associations]
symbol:tiar-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
"calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
Length = 450
Score = 114 (45.2 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVL 57
++ F++FG+V++A +I D SKGYG V+F ++ A+ A+ MNGK + R +
Sbjct: 240 LLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGMNGKWIGKRAV 296
>UNIPROTKB|K7ELV6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
Length = 70
Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 17/49 (34%), Positives = 32/49 (65%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGK 50
+ FS++GQ+++ ++ D+ S+G+G VTF ++A+ A+ MNGK
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGK 70
>UNIPROTKB|F1PJX5 [details] [associations]
symbol:RBFOX3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000013767 InterPro:IPR025670 Pfam:PF12414
OMA:LQASLCR EMBL:AAEX03006224 EMBL:AAEX03006225
Ensembl:ENSCAFT00000008934 Uniprot:F1PJX5
Length = 279
Score = 110 (43.8 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 22/56 (39%), Positives = 36/56 (64%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
F QFG++ II ++ SKG+G VTF T +A +A ++NG +++GR + V+N
Sbjct: 45 FGQFGKILDVEIIFNE--RGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNN 98
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 114 (45.2 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 25/66 (37%), Positives = 37/66 (56%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD- 60
+ F ++G + A +IMD SKGYG V F T E A+ A+ K +DGR++ +D
Sbjct: 279 LGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDL 338
Query: 61 -NVRPS 65
N RP+
Sbjct: 339 SNPRPA 344
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 110 (43.8 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
I AF+ FG+++ A ++ D SKGYG V+F + +A+ A+ +M G+ L GR
Sbjct: 107 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 160
>DICTYBASE|DDB_G0283687 [details] [associations]
symbol:DDB_G0283687 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0283687 EMBL:AAFI02000056 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K13091
RefSeq:XP_638966.1 ProteinModelPortal:Q54QQ7
EnsemblProtists:DDB0233350 GeneID:8624212 KEGG:ddi:DDB_G0283687
InParanoid:Q54QQ7 OMA:VDINIDE Uniprot:Q54QQ7
Length = 727
Score = 116 (45.9 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
++D FSQ G V +I DK KG G V FS +E KA+ ++G +LDG+ + V +
Sbjct: 282 LSDLFSQAGTVLNVRLITDKVTKRMKGVGYVEFSQKEMVDKAIA-LSGSVLDGQQILVHS 340
Query: 62 VRPSRR 67
++P ++
Sbjct: 341 IQPEKK 346
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 110 (43.8 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
I AF+ FG+++ A ++ D SKGYG V+F + +A+ A+ +M G+ L GR
Sbjct: 111 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 164
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 113 (44.8 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
I F FG+V +I DK S GYG V + +E+A+KA+ +NG L + + V
Sbjct: 126 IRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSI 185
Query: 62 VRPS 65
RPS
Sbjct: 186 ARPS 189
Score = 99 (39.9 bits), Expect = 0.00022, P = 0.00022
Identities = 23/54 (42%), Positives = 28/54 (51%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F FG V +I D N KG+G VT + EEA A+ +NG L RVL V
Sbjct: 381 FGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSLNGYTLGNRVLQV 434
>ASPGD|ASPL0000076347 [details] [associations]
symbol:AN4505 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 EMBL:BN001303
EMBL:AACD01000078 HOGENOM:HOG000183826 KO:K12876 eggNOG:NOG246776
OrthoDB:EOG4M9523 RefSeq:XP_662109.1 ProteinModelPortal:Q5B4M5
SMR:Q5B4M5 STRING:Q5B4M5 EnsemblFungi:CADANIAT00005939
GeneID:2872307 KEGG:ani:AN4505.2 OMA:IEGWIII Uniprot:Q5B4M5
Length = 158
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNG-KLLDGRVLFVD 60
+ D F+++G++ ++ +D+ KGY + +ST EA +A+ E+NG KLLD + + VD
Sbjct: 58 VTDLFAEYGEIKNFSLNLDRRTGYVKGYALIEYSTLPEAAEAIKELNGTKLLD-QTIEVD 116
Query: 61 N--VRP 64
VRP
Sbjct: 117 YAFVRP 122
>UNIPROTKB|E2RSQ3 [details] [associations]
symbol:SLIRP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
CTD:81892 GeneTree:ENSGT00390000008624 OMA:SNELREH
EMBL:AAEX03005881 RefSeq:XP_547932.2 ProteinModelPortal:E2RSQ3
Ensembl:ENSCAFT00000027289 GeneID:490810 KEGG:cfa:490810
NextBio:20863760 Uniprot:E2RSQ3
Length = 111
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 24/63 (38%), Positives = 35/63 (55%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + F+QFG V K T+ DK +G G V FS+EE+ Q AL + ++DG L +
Sbjct: 35 LREHFAQFGHVRKCTVPFDKETGFHRGMGWVHFSSEEDLQNAL-QQEKHIIDGVKLHIQA 93
Query: 62 VRP 64
RP
Sbjct: 94 RRP 96
>UNIPROTKB|Q29RT0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9913 "Bos taurus" [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0001047 "core promoter binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0048025 "negative regulation
of mRNA splicing, via spliceosome" evidence=ISS] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISS] [GO:0005719 "nuclear
euchromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0071347 "cellular
response to interleukin-1" evidence=ISS] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
EMBL:BC114040 IPI:IPI00721392 RefSeq:NP_001040075.1
RefSeq:XP_001250252.1 UniGene:Bt.59490 ProteinModelPortal:Q29RT0
SMR:Q29RT0 Ensembl:ENSBTAT00000066112 GeneID:617969 GeneID:782306
KEGG:bta:617969 KEGG:bta:782306 CTD:27288
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InParanoid:Q29RT0 OMA:GDFDLRP OrthoDB:EOG4WSWBK
NextBio:20900925 InterPro:IPR012604 Pfam:PF08081 Uniprot:Q29RT0
Length = 396
Score = 112 (44.5 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 18/54 (33%), Positives = 37/54 (68%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F ++G++++ ++ D+ N S+G+ +TF + +A+ A+ +MNGK LDG+ + V
Sbjct: 28 FGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVRDMNGKSLDGKAIKV 81
>UNIPROTKB|A6NFN3 [details] [associations]
symbol:RBFOX3 "RNA binding protein fox-1 homolog 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0043025 "neuronal cell body" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0003677 GO:GO:0043025 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000381 eggNOG:NOG258617
KO:K14946 HOVERGEN:HBG000044 InterPro:IPR025670 Pfam:PF12414
CTD:146713 EMBL:AK293617 EMBL:AC021534 EMBL:AC073624
IPI:IPI00908333 RefSeq:NP_001076044.1 UniGene:Hs.135229
ProteinModelPortal:A6NFN3 SMR:A6NFN3 STRING:A6NFN3 PaxDb:A6NFN3
PRIDE:A6NFN3 Ensembl:ENST00000415831 Ensembl:ENST00000453134
Ensembl:ENST00000580155 GeneID:146713 KEGG:hsa:146713
UCSC:uc010dhs.3 GeneCards:GC17M077086 HGNC:HGNC:27097 HPA:HPA030790
neXtProt:NX_A6NFN3 HOGENOM:HOG000230971 GenomeRNAi:146713
NextBio:85428 ArrayExpress:A6NFN3 Bgee:A6NFN3 Genevestigator:A6NFN3
Uniprot:A6NFN3
Length = 312
Score = 110 (43.8 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 22/56 (39%), Positives = 36/56 (64%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
F QFG++ II ++ SKG+G VTF T +A +A ++NG +++GR + V+N
Sbjct: 119 FGQFGKILDVEIIFNE--RGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNN 172
>UNIPROTKB|J9PAH3 [details] [associations]
symbol:RBFOX3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000013767 InterPro:IPR025670 Pfam:PF12414
EMBL:AAEX03006224 EMBL:AAEX03006225 Ensembl:ENSCAFT00000046179
Uniprot:J9PAH3
Length = 314
Score = 110 (43.8 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 22/56 (39%), Positives = 36/56 (64%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
F QFG++ II ++ SKG+G VTF T +A +A ++NG +++GR + V+N
Sbjct: 60 FGQFGKILDVEIIFNE--RGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNN 113
>WB|WBGene00006321 [details] [associations]
symbol:sup-12 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0040012 "regulation of locomotion" evidence=IGI] [GO:0032956
"regulation of actin cytoskeleton organization" evidence=IGI]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0036002 "pre-mRNA
binding" evidence=IPI] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0097157 "pre-mRNA
intronic binding" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0040012 GO:GO:0030529 GO:GO:0032956 GO:GO:0097157
GO:GO:0000380 HSSP:P09651 HOGENOM:HOG000276232
GeneTree:ENSGT00390000002308 EMBL:FO081409 GeneID:180674
KEGG:cel:CELE_T22B2.4 CTD:180674 PIR:T33034 RefSeq:NP_508674.1
ProteinModelPortal:O45189 SMR:O45189 DIP:DIP-24970N IntAct:O45189
MINT:MINT-1047167 STRING:O45189 EnsemblMetazoa:T22B2.4a
UCSC:T22B2.4 WormBase:T22B2.4a InParanoid:O45189 OMA:DRNTQKS
NextBio:910400 ArrayExpress:O45189 Uniprot:O45189
Length = 248
Score = 108 (43.1 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
F QFG + +A +I D+ S+GYG VT A++A + N ++DGR V+
Sbjct: 55 FEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKDPN-PIIDGRKANVNLAYLG 113
Query: 66 RRYNTDVPLARL 77
+ T+V LA L
Sbjct: 114 AKPRTNVQLAAL 125
>UNIPROTKB|O45189 [details] [associations]
symbol:sup-12 "Protein SUP-12, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0040012 GO:GO:0030529 GO:GO:0032956
GO:GO:0097157 GO:GO:0000380 HSSP:P09651 HOGENOM:HOG000276232
GeneTree:ENSGT00390000002308 EMBL:FO081409 GeneID:180674
KEGG:cel:CELE_T22B2.4 CTD:180674 PIR:T33034 RefSeq:NP_508674.1
ProteinModelPortal:O45189 SMR:O45189 DIP:DIP-24970N IntAct:O45189
MINT:MINT-1047167 STRING:O45189 EnsemblMetazoa:T22B2.4a
UCSC:T22B2.4 WormBase:T22B2.4a InParanoid:O45189 OMA:DRNTQKS
NextBio:910400 ArrayExpress:O45189 Uniprot:O45189
Length = 248
Score = 108 (43.1 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
F QFG + +A +I D+ S+GYG VT A++A + N ++DGR V+
Sbjct: 55 FEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKDPN-PIIDGRKANVNLAYLG 113
Query: 66 RRYNTDVPLARL 77
+ T+V LA L
Sbjct: 114 AKPRTNVQLAAL 125
>MGI|MGI:1922638 [details] [associations]
symbol:Boll "bol, boule-like (Drosophila)" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0007126
"meiosis" evidence=ISO] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0008494 "translation activator activity"
evidence=ISO] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0045948 "positive regulation of translational initiation"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1922638 GO:GO:0007275
GO:GO:0005737 GO:GO:0030154 GO:GO:0006417 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 CTD:66037
eggNOG:NOG260394 HOGENOM:HOG000095250 HOVERGEN:HBG048761
OrthoDB:EOG4MPHQQ EMBL:AF272859 EMBL:AK016125 EMBL:BY103870
IPI:IPI00403643 IPI:IPI00886395 RefSeq:NP_001106838.1
RefSeq:NP_083543.2 UniGene:Mm.483408 ProteinModelPortal:Q924M5
SMR:Q924M5 STRING:Q924M5 PhosphoSite:Q924M5 PRIDE:Q924M5
DNASU:75388 Ensembl:ENSMUST00000159398 GeneID:75388 KEGG:mmu:75388
UCSC:uc007bal.1 UCSC:uc007bam.1 GeneTree:ENSGT00530000063480
InParanoid:Q924M5 NextBio:342892 Bgee:Q924M5 CleanEx:MM_BOLL
Genevestigator:Q924M5 GermOnline:ENSMUSG00000025977 Uniprot:Q924M5
Length = 281
Score = 109 (43.4 bits), Expect = 8.3e-06, P = 8.3e-06
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
FSQ+G V + I+ D+ SKGYG +TF T+E+AQK L E + L N+ P+
Sbjct: 53 FSQYGSVKEVKIVNDRA-GVSKGYGFITFETQEDAQKILQEAEKLNYKDKKL---NIGPA 108
Query: 66 -RRYNTDVPLARL 77
R+ +P + L
Sbjct: 109 IRKQQVGIPRSSL 121
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 111 (44.1 bits), Expect = 8.3e-06, P = 8.3e-06
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
I AF+ FG+++ A ++ D SKGYG V+F + +A+ A+ M G+ L GR
Sbjct: 130 IKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR 183
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 111 (44.1 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
I AF+ FG+++ A ++ D SKGYG V+F + +A+ A+ M G+ L GR
Sbjct: 130 IKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR 183
>UNIPROTKB|B4DF29 [details] [associations]
symbol:RBFOX3 "RNA binding protein fox-1 homolog"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484 HOVERGEN:HBG000044
InterPro:IPR025670 Pfam:PF12414 EMBL:AC021534 EMBL:AC073624
IPI:IPI00908333 UniGene:Hs.135229 HGNC:HGNC:27097
HOGENOM:HOG000230971 EMBL:AC020689 EMBL:AC027824 EMBL:AC055858
EMBL:AC142247 EMBL:AK293905 ProteinModelPortal:B4DF29 STRING:B4DF29
Ensembl:ENST00000584778 UCSC:uc010wua.2 ArrayExpress:B4DF29
Bgee:B4DF29 Uniprot:B4DF29
Length = 325
Score = 110 (43.8 bits), Expect = 8.5e-06, P = 8.5e-06
Identities = 22/56 (39%), Positives = 36/56 (64%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
F QFG++ II ++ SKG+G VTF T +A +A ++NG +++GR + V+N
Sbjct: 119 FGQFGKILDVEIIFNE--RGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNN 172
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 111 (44.1 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
I AF+ FG+++ A ++ D SKGYG V+F + +A+ A+ M G+ L GR
Sbjct: 113 IKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR 166
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 111 (44.1 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
I AF+ FG+++ A ++ D SKGYG V+F + +A+ A+ M G+ L GR
Sbjct: 113 IKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR 166
>DICTYBASE|DDB_G0279695 [details] [associations]
symbol:DDB_G0279695 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0279695 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000032 eggNOG:COG0724
ProtClustDB:CLSZ2430003 RefSeq:XP_641604.1
ProteinModelPortal:Q54WE9 PRIDE:Q54WE9 EnsemblProtists:DDB0233747
GeneID:8622181 KEGG:ddi:DDB_G0279695 InParanoid:Q54WE9 OMA:HEMDGRQ
Uniprot:Q54WE9
Length = 84
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 22/55 (40%), Positives = 34/55 (61%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
FS+FG V+ +++D+ SKG+G VTF E AQ A+ ++ +DGR L V+
Sbjct: 23 FSKFGPVSDGYVVLDRITKRSKGFGFVTFDNAESAQNAVNSVHE--MDGRQLVVN 75
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 111 (44.1 bits), Expect = 9.1e-06, P = 9.1e-06
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
I AF+ FG+++ A ++ D SKGYG V+F + +A+ A+ M G+ L GR
Sbjct: 129 IKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR 182
>RGD|1306751 [details] [associations]
symbol:Rbmxrtl "RNA binding motif protein, X chromosome
retrogene-like" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0001047 "core promoter binding" evidence=ISO] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0005719 "nuclear euchromatin" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=IDA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0044530 "supraspliceosomal complex" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO;ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IDA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0051260 "protein homooligomerization"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0071347 "cellular response to interleukin-1"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1306751 GO:GO:0007275
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0006376 GO:GO:0000381
GO:GO:0044530 GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
OMA:ILLMKDR OrthoDB:EOG4001KF UniGene:Rn.19966 EMBL:AABR03113401
IPI:IPI00559910 RefSeq:NP_001100890.1 ProteinModelPortal:P84586
SMR:P84586 STRING:P84586 PhosphoSite:P84586 PRIDE:P84586
Ensembl:ENSRNOT00000016184 GeneID:307779 KEGG:rno:307779
UCSC:RGD:1306751 CTD:307779 InParanoid:P84586 NextBio:657858
Genevestigator:P84586 GermOnline:ENSRNOG00000012138 Uniprot:P84586
Length = 388
Score = 111 (44.1 bits), Expect = 9.1e-06, P = 9.1e-06
Identities = 20/61 (32%), Positives = 38/61 (62%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV-RP 64
F ++G++ + ++ D+ N S+G+ VTF + +A+ +MNGK LDG+ + V+ +P
Sbjct: 28 FGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDMNGKSLDGKAIKVEQATKP 87
Query: 65 S 65
S
Sbjct: 88 S 88
>RGD|1585845 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X-linked-like 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1585845 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OrthoDB:EOG4CNQSK EMBL:AC136101 IPI:IPI00763272 UniGene:Rn.19966
Ensembl:ENSRNOT00000041672 UCSC:RGD:1585845 Uniprot:D4AE41
Length = 388
Score = 111 (44.1 bits), Expect = 9.1e-06, P = 9.1e-06
Identities = 20/61 (32%), Positives = 38/61 (62%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV-RP 64
F ++G++ + ++ D+ N S+G+ VTF + +A+ +MNGK LDG+ + V+ +P
Sbjct: 28 FGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDMNGKSLDGKAIKVEQATKP 87
Query: 65 S 65
S
Sbjct: 88 S 88
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 111 (44.1 bits), Expect = 9.1e-06, P = 9.1e-06
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
I AF+ FG+++ A ++ D SKGYG V+F + +A+ A+ M G+ L GR
Sbjct: 130 IKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR 183
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 111 (44.1 bits), Expect = 9.2e-06, P = 9.2e-06
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
I AF+ FG+++ A ++ D SKGYG V+F + +A+ A+ M G+ L GR
Sbjct: 130 IKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR 183
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 111 (44.1 bits), Expect = 9.2e-06, P = 9.2e-06
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
I AF+ FG+++ A ++ D SKGYG V+F + +A+ A+ M G+ L GR
Sbjct: 130 IKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR 183
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 111 (44.1 bits), Expect = 9.2e-06, P = 9.2e-06
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
I AF+ FG+++ A ++ D SKGYG V+F + +A+ A+ M G+ L GR
Sbjct: 130 IKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR 183
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 111 (44.1 bits), Expect = 9.2e-06, P = 9.2e-06
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
I AF+ FG+++ A ++ D SKGYG V+F + +A+ A+ M G+ L GR
Sbjct: 130 IKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR 183
>UNIPROTKB|G3MY63 [details] [associations]
symbol:BOLL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063480 EMBL:DAAA02005516 EMBL:DAAA02005517
EMBL:DAAA02005518 Ensembl:ENSBTAT00000065390 Uniprot:G3MY63
Length = 271
Score = 108 (43.1 bits), Expect = 9.9e-06, P = 9.9e-06
Identities = 27/69 (39%), Positives = 38/69 (55%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
FSQ+G V + I+ D+ SKGYG VTF T+E+AQK L E + L N+ P+
Sbjct: 65 FSQYGSVKEVKIVNDRA-GVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKL---NIGPA 120
Query: 66 -RRYNTDVP 73
R+ +P
Sbjct: 121 IRKQQVGIP 129
WARNING: HSPs involving 565 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.132 0.361 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 80 80 0.00091 102 3 11 22 0.41 29
29 0.41 30
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 815
No. of states in DFA: 426 (45 KB)
Total size of DFA: 73 KB (2062 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 9.25u 0.07s 9.32t Elapsed: 00:00:02
Total cpu time: 9.27u 0.07s 9.34t Elapsed: 00:00:03
Start: Fri May 10 05:36:57 2013 End: Fri May 10 05:37:00 2013
WARNINGS ISSUED: 2