BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035722
(80 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224091949|ref|XP_002309412.1| predicted protein [Populus trichocarpa]
gi|222855388|gb|EEE92935.1| predicted protein [Populus trichocarpa]
Length = 139
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 58/75 (77%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+++AFSQ+GQV +A I+MD+ + SKG+G VT+++E+EAQKAL EMNGK L+GRV++VD
Sbjct: 55 LSEAFSQYGQVVEAKIVMDRALDRSKGFGFVTYASEDEAQKALDEMNGKALNGRVIYVDY 114
Query: 62 VRPSRRYNTDVPLAR 76
+ + +P+AR
Sbjct: 115 AKLKTNFGGGIPIAR 129
>gi|255579369|ref|XP_002530529.1| RNA binding protein, putative [Ricinus communis]
gi|223529933|gb|EEF31861.1| RNA binding protein, putative [Ricinus communis]
Length = 127
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 57/75 (76%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFSQ+GQV +ATI+ D+ + SKG+G VTF++E+EA AL+EMNGK L+GRV++VD
Sbjct: 47 LTEAFSQYGQVVEATIVSDRVLDRSKGFGFVTFASEDEAHNALSEMNGKTLNGRVIYVDY 106
Query: 62 VRPSRRYNTDVPLAR 76
+P +VP+AR
Sbjct: 107 AKPRTDSRNEVPIAR 121
>gi|359482021|ref|XP_002276063.2| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Vitis vinifera]
gi|297740158|emb|CBI30340.3| unnamed protein product [Vitis vinifera]
Length = 133
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 57/75 (76%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+++ FSQ+GQV +A I+MD+ + SKG+G VTF++EEEAQKA TEM+GK L+GR +FVD
Sbjct: 50 LSEHFSQYGQVVEAKIVMDRVSDRSKGFGFVTFASEEEAQKARTEMDGKELNGRTIFVDY 109
Query: 62 VRPSRRYNTDVPLAR 76
+P + +P+AR
Sbjct: 110 AKPRADFGGGMPIAR 124
>gi|388502672|gb|AFK39402.1| unknown [Medicago truncatula]
Length = 140
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 57/75 (76%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
++DAFS +GQV +A +I D+ SKGYG VTF++++EA+KA+TEMN K L+GRV+FVD
Sbjct: 48 LSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITEMNEKALNGRVVFVDY 107
Query: 62 VRPSRRYNTDVPLAR 76
+P + + +P+AR
Sbjct: 108 AKPDTKRSMGMPIAR 122
>gi|449500867|ref|XP_004161215.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Cucumis sativus]
Length = 134
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 58/75 (77%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+++AFSQ+GQV +AT++MD+ + SKG+G VTF++ +EA AL+EMNGK L+GRV+FV+
Sbjct: 51 LSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKPLNGRVIFVNY 110
Query: 62 VRPSRRYNTDVPLAR 76
+P+ +P+AR
Sbjct: 111 AKPTTSSRGAIPIAR 125
>gi|449462934|ref|XP_004149190.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Cucumis sativus]
Length = 134
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 58/75 (77%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+++AFSQ+GQV +AT++MD+ + SKG+G VTF++ +EA AL+EMNGK L+GRV+FV+
Sbjct: 51 LSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKPLNGRVIFVNY 110
Query: 62 VRPSRRYNTDVPLAR 76
+P+ +P+AR
Sbjct: 111 AKPTTSSRGAIPIAR 125
>gi|357167535|ref|XP_003581210.1| PREDICTED: 40S ribosomal protein S19, mitochondrial-like
[Brachypodium distachyon]
Length = 137
Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 57/75 (76%), Gaps = 1/75 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+A+AF+++GQV +ATI+ DK N SKG+G V F++EEEA KA EMNGK+L+GRV++VD
Sbjct: 52 LAEAFARYGQVLEATIVTDKMTNRSKGFGFVKFASEEEANKARDEMNGKVLNGRVIYVDI 111
Query: 62 VRPSRRYNTDV-PLA 75
+ + TDV P+A
Sbjct: 112 AKAKQDRATDVLPIA 126
>gi|255565709|ref|XP_002523844.1| Cold-inducible RNA-binding protein, putative [Ricinus communis]
gi|223536932|gb|EEF38570.1| Cold-inducible RNA-binding protein, putative [Ricinus communis]
Length = 121
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 48/61 (78%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS+FG++ + II DK + KGY VTF+TE EA+KALTEMNGK++DGR +FVDN
Sbjct: 50 LTEAFSKFGEIVEVNIIKDKAMDRPKGYAYVTFATENEAKKALTEMNGKVIDGRPVFVDN 109
Query: 62 V 62
V
Sbjct: 110 V 110
>gi|351724633|ref|NP_001238088.1| uncharacterized protein LOC100527061 [Glycine max]
gi|255631468|gb|ACU16101.1| unknown [Glycine max]
Length = 113
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 49/65 (75%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+A AFSQ+G V KA II++K KN SKG+G V F+ EEEA KA +MNGK+L GRV++VD
Sbjct: 49 LAKAFSQYGSVLKANIILNKAKNRSKGFGYVIFAKEEEACKAQIDMNGKILHGRVIYVDV 108
Query: 62 VRPSR 66
P++
Sbjct: 109 QLPNK 113
>gi|359479548|ref|XP_003632289.1| PREDICTED: cold-inducible RNA-binding protein-like [Vitis vinifera]
gi|296084877|emb|CBI28286.3| unnamed protein product [Vitis vinifera]
Length = 111
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 48/59 (81%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+A+AFSQFG+V +A IIMDK K KG+ VTF+ E+EA+KALTEMNGK++DGR + VD
Sbjct: 50 LAEAFSQFGEVVEAKIIMDKRKLRPKGFAYVTFTREDEAEKALTEMNGKVVDGRTVLVD 108
>gi|361067299|gb|AEW07961.1| Pinus taeda anonymous locus 0_15424_01 genomic sequence
gi|383126579|gb|AFG43909.1| Pinus taeda anonymous locus 0_15424_01 genomic sequence
gi|383126581|gb|AFG43910.1| Pinus taeda anonymous locus 0_15424_01 genomic sequence
gi|383126583|gb|AFG43911.1| Pinus taeda anonymous locus 0_15424_01 genomic sequence
gi|383126585|gb|AFG43912.1| Pinus taeda anonymous locus 0_15424_01 genomic sequence
gi|383126587|gb|AFG43913.1| Pinus taeda anonymous locus 0_15424_01 genomic sequence
gi|383126589|gb|AFG43914.1| Pinus taeda anonymous locus 0_15424_01 genomic sequence
gi|383126591|gb|AFG43915.1| Pinus taeda anonymous locus 0_15424_01 genomic sequence
Length = 84
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 54/72 (75%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS+FG+V + I+MD+ SKG+G V +++E +A++A EMNGK+L GR++FVD+
Sbjct: 4 LTEAFSRFGEVVEVKIVMDRVSQRSKGFGFVQYASEADAERAKAEMNGKVLSGRIIFVDD 63
Query: 62 VRPSRRYNTDVP 73
V+P + + D+P
Sbjct: 64 VKPKSQLSGDLP 75
>gi|357457753|ref|XP_003599157.1| Cold-inducible RNA-binding protein [Medicago truncatula]
gi|355488205|gb|AES69408.1| Cold-inducible RNA-binding protein [Medicago truncatula]
Length = 134
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 50/68 (73%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+A+AFSQ+G V KA I+++K K KG+G VTF+ EEEA+KA MNGK+L GRVL+VD
Sbjct: 48 LAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKILHGRVLYVDM 107
Query: 62 VRPSRRYN 69
P+ + N
Sbjct: 108 DPPNEQKN 115
>gi|116781215|gb|ABK22008.1| unknown [Picea sitchensis]
Length = 140
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 54/74 (72%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS+FG+V + ++MD+ SKG+G V +++E +A++A EMNGK+L GR++FVD
Sbjct: 48 LTEAFSRFGEVVEVKVVMDRVSQRSKGFGFVQYASEADAERAKAEMNGKVLSGRIIFVDT 107
Query: 62 VRPSRRYNTDVPLA 75
V+P + + D+P A
Sbjct: 108 VKPKSQLSGDLPSA 121
>gi|351725383|ref|NP_001238370.1| uncharacterized protein LOC100527079 [Glycine max]
gi|255631508|gb|ACU16121.1| unknown [Glycine max]
Length = 130
Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 56/75 (74%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+++AFS +GQV +A I+ D+ + SKG+G VTF++++EA+ A+ +M GK L+GRV+FVD
Sbjct: 45 LSEAFSNYGQVIEAKIVTDRVSDRSKGFGFVTFASQDEAENAIEDMKGKTLNGRVIFVDY 104
Query: 62 VRPSRRYNTDVPLAR 76
+P+ ++P+AR
Sbjct: 105 AKPNINTRGEIPIAR 119
>gi|38344030|emb|CAE01512.2| OJ991214_12.1 [Oryza sativa Japonica Group]
gi|38346331|emb|CAE02067.2| OJ000126_13.13 [Oryza sativa Japonica Group]
gi|116309334|emb|CAH66418.1| H0622F05.1 [Oryza sativa Indica Group]
gi|116309399|emb|CAH66476.1| OSIGBa0137L20.5 [Oryza sativa Indica Group]
Length = 137
Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 50/70 (71%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+A+AFSQ+GQV +ATI+ DK N KG+G V F++EE A KA EMNGK+L+GRV++VD
Sbjct: 53 LAEAFSQYGQVLEATIVTDKMTNRPKGFGFVKFASEEAANKAKEEMNGKVLNGRVIYVDI 112
Query: 62 VRPSRRYNTD 71
+ TD
Sbjct: 113 AKAKMNRTTD 122
>gi|388521117|gb|AFK48620.1| unknown [Lotus japonicus]
Length = 161
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 49/66 (74%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+A+AFSQ+G+V KA I++++ K SKG+G VTF+ EE+AQKA MN K+L GRVL+VD
Sbjct: 85 LAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQIGMNRKILHGRVLYVDM 144
Query: 62 VRPSRR 67
P +
Sbjct: 145 EPPDKH 150
>gi|361067297|gb|AEW07960.1| Pinus taeda anonymous locus 0_15424_01 genomic sequence
Length = 84
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 53/72 (73%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS+FG+V + I+MD+ SKG+G V +++E +A++A EMNGK+L GR++FVD+
Sbjct: 4 LTEAFSRFGEVVEVKIVMDRVSQRSKGFGFVQYASEADAERAKAEMNGKVLSGRIIFVDD 63
Query: 62 VRPSRRYNTDVP 73
V+ + + D+P
Sbjct: 64 VKAKSQLSGDLP 75
>gi|297806641|ref|XP_002871204.1| hypothetical protein ARALYDRAFT_487428 [Arabidopsis lyrata subsp.
lyrata]
gi|297317041|gb|EFH47463.1| hypothetical protein ARALYDRAFT_487428 [Arabidopsis lyrata subsp.
lyrata]
Length = 144
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+++AFS+ GQV +A I+MD+ + SKG+G VTF++ +EAQKAL E NG+ +GRV+FVD
Sbjct: 50 LSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASVDEAQKALMEFNGQQFNGRVIFVDY 109
Query: 62 VRPSRRYNTD-VPLAR 76
+ + + P+AR
Sbjct: 110 AKAKQSFGGGRYPIAR 125
>gi|224104887|ref|XP_002313606.1| predicted protein [Populus trichocarpa]
gi|222850014|gb|EEE87561.1| predicted protein [Populus trichocarpa]
Length = 109
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 45/58 (77%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
IA+AFS+FG+V +A I+MDK + KGYG VTF+ ++ A+KA MNGKLLDGR ++V
Sbjct: 50 IAEAFSEFGEVIEAKIVMDKARKRPKGYGFVTFAKKDAAEKACEGMNGKLLDGRAIYV 107
>gi|30683481|ref|NP_565646.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|106879155|gb|ABF82607.1| At2g27330 [Arabidopsis thaliana]
gi|330252880|gb|AEC07974.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 116
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 49/70 (70%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ AFSQ+GQV K +IMDK + KG+ VTFS++EEA+KAL E+N +L+DGRV+ +D
Sbjct: 37 LTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELNAQLVDGRVVILDT 96
Query: 62 VRPSRRYNTD 71
+ ++ D
Sbjct: 97 TKAAKHNPPD 106
>gi|242073000|ref|XP_002446436.1| hypothetical protein SORBIDRAFT_06g016070 [Sorghum bicolor]
gi|241937619|gb|EES10764.1| hypothetical protein SORBIDRAFT_06g016070 [Sorghum bicolor]
Length = 135
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+A+AFS++GQV +AT++ DK + KG+G V F++ EEA A EMNGK L+GRV++VD
Sbjct: 51 LAEAFSRYGQVIEATVVRDKVTDIPKGFGFVKFASPEEANNAREEMNGKALNGRVIYVDI 110
Query: 62 VRPSRRYNTD-VPLAR 76
+ TD +P+AR
Sbjct: 111 AKAKPDRATDALPIAR 126
>gi|226510389|ref|NP_001150093.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195636652|gb|ACG37794.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 135
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+A+AFS++GQV +AT++ DK + KG+G V F++ EEA A EMNGK L+GRV++VD
Sbjct: 51 LAEAFSRYGQVIEATVVRDKVTDVPKGFGFVKFASPEEANNAREEMNGKALNGRVIYVDI 110
Query: 62 VRPSRRYNTD-VPLAR 76
+ + D +P+AR
Sbjct: 111 AKARQDRAADALPIAR 126
>gi|15239958|ref|NP_196239.1| RNA recognition motif (RRM)-containing protein [Arabidopsis
thaliana]
gi|9759319|dbj|BAB09686.1| unnamed protein product [Arabidopsis thaliana]
gi|17065276|gb|AAL32792.1| Unknown protein [Arabidopsis thaliana]
gi|20260002|gb|AAM13348.1| unknown protein [Arabidopsis thaliana]
gi|21593170|gb|AAM65119.1| unknown [Arabidopsis thaliana]
gi|332003601|gb|AED90984.1| RNA recognition motif (RRM)-containing protein [Arabidopsis
thaliana]
Length = 146
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 53/77 (68%), Gaps = 2/77 (2%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+++AFS+ GQV +A I+MD+ + SKG+G VTF++ +EAQKAL E NG+ L+GR +FVD
Sbjct: 50 LSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDY 109
Query: 62 VRPSRRY--NTDVPLAR 76
+ + P+AR
Sbjct: 110 AKAKQSLGGGGGYPIAR 126
>gi|194699346|gb|ACF83757.1| unknown [Zea mays]
gi|414587318|tpg|DAA37889.1| TPA: glycine-rich RNA-binding protein 2 [Zea mays]
Length = 135
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+A+AFS++GQV +AT++ DK + KG+G V F++ EEA A EMNGK L+GRV++VD
Sbjct: 51 LAEAFSRYGQVIEATVVRDKVTDVPKGFGFVKFASPEEANNAREEMNGKALNGRVIYVDI 110
Query: 62 VRPSRRYNTD-VPLAR 76
+ + D +P+AR
Sbjct: 111 AKARQDRAADALPIAR 126
>gi|116779573|gb|ABK21345.1| unknown [Picea sitchensis]
gi|224285462|gb|ACN40453.1| unknown [Picea sitchensis]
Length = 198
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 46/66 (69%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS +G+V IIM+K SKG+G V FSTEEEA AL EMNGK+L+G ++ VD
Sbjct: 104 LQNAFSNYGKVVDVRIIMNKTTRRSKGFGFVEFSTEEEANTALKEMNGKILNGWLISVDI 163
Query: 62 VRPSRR 67
+P+ R
Sbjct: 164 AKPTPR 169
>gi|357510439|ref|XP_003625508.1| RNA binding protein [Medicago truncatula]
gi|355500523|gb|AES81726.1| RNA binding protein [Medicago truncatula]
Length = 141
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 44/63 (69%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS FGQ+ +A +I D+G SKG+ V++ST EEA+KA MN K LDG V+FVD
Sbjct: 51 LTEAFSPFGQLLEAKVITDRGSGRSKGFAFVSYSTIEEAEKAREGMNAKFLDGWVIFVDP 110
Query: 62 VRP 64
+P
Sbjct: 111 AKP 113
>gi|297826049|ref|XP_002880907.1| RNA recognition motif-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297326746|gb|EFH57166.1| RNA recognition motif-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 116
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 44/59 (74%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ AFSQ+GQV + +IMDK + KG VTFS++EEA KAL E+NG+L+DGRV+ +D
Sbjct: 37 LTQAFSQYGQVLRVDVIMDKIRCRPKGIAYVTFSSKEEAGKALLELNGRLVDGRVVILD 95
>gi|351724829|ref|NP_001237071.1| uncharacterized protein LOC100306326 [Glycine max]
gi|255628209|gb|ACU14449.1| unknown [Glycine max]
Length = 139
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS FGQ+ +A +I+D+ SKG+ VT++T EEA+KA MN K LDG V+FVD
Sbjct: 49 LKEAFSSFGQLVEAKVIIDRASGRSKGFAFVTYTTIEEAEKAREGMNAKFLDGWVIFVDP 108
Query: 62 VRP 64
+P
Sbjct: 109 AKP 111
>gi|225464267|ref|XP_002271224.1| PREDICTED: cold-inducible RNA-binding protein [Vitis vinifera]
gi|296088019|emb|CBI35302.3| unnamed protein product [Vitis vinifera]
Length = 170
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 45/63 (71%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AF FGQ+ + ++MDK N +G+ + +STEEE++KA+ M+GK LDGRV+FV+
Sbjct: 95 LRNAFETFGQLVEVNLVMDKIANRPRGFAFLRYSTEEESEKAIEGMHGKFLDGRVIFVEV 154
Query: 62 VRP 64
+P
Sbjct: 155 AKP 157
>gi|15224298|ref|NP_181287.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|20197470|gb|AAM15089.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|21536972|gb|AAM61313.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|114050677|gb|ABI49488.1| At2g37510 [Arabidopsis thaliana]
gi|330254316|gb|AEC09410.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 142
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 42/59 (71%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ DAF+ FGQ+ A +I D+ SKG+G VT++T E+A+KA EMN K LDG V+FVD
Sbjct: 50 LQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVD 108
>gi|356505124|ref|XP_003521342.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Glycine max]
Length = 139
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS FGQ+ +A +I D+ SKG+ VT++T EEA++A MN K LDG V+FVD
Sbjct: 49 LKEAFSSFGQLVEAKVITDRASGRSKGFAFVTYTTIEEAERAREGMNAKFLDGWVIFVDP 108
Query: 62 VRP 64
+P
Sbjct: 109 AKP 111
>gi|297827259|ref|XP_002881512.1| hypothetical protein ARALYDRAFT_902894 [Arabidopsis lyrata subsp.
lyrata]
gi|297327351|gb|EFH57771.1| hypothetical protein ARALYDRAFT_902894 [Arabidopsis lyrata subsp.
lyrata]
Length = 142
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 42/59 (71%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ DAF+ FGQ+ A +I D+ SKG+G VT++T E+A+KA EMN K LDG V+FVD
Sbjct: 50 LQDAFASFGQLVDARVITDRETGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVD 108
>gi|351725889|ref|NP_001237108.1| uncharacterized protein LOC100305561 [Glycine max]
gi|255625921|gb|ACU13305.1| unknown [Glycine max]
Length = 180
Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 45/63 (71%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AF FGQ+ + ++MD+ N +G+ + ++TEEE+QKA+ M+GK LDGRV+FV+
Sbjct: 104 LRNAFKNFGQLVEVKLVMDRIANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEV 163
Query: 62 VRP 64
+P
Sbjct: 164 AKP 166
>gi|406950086|gb|EKD80418.1| cp31AHv protein [uncultured bacterium]
Length = 122
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 41/59 (69%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
FSQ G V+ A +I D+ SKG+G V S++EEAQKA+ E+NGK LDGR + V+ RP
Sbjct: 23 FSQAGTVSSARVITDRATGRSKGFGFVEMSSDEEAQKAVAELNGKELDGRAIVVNEARP 81
>gi|388505224|gb|AFK40678.1| unknown [Lotus japonicus]
Length = 187
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 43/63 (68%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + F FGQ+ ++MDK N +G+ + ++TEEE+QKA+ M+GK LDGRV+FV+
Sbjct: 110 LRNCFKNFGQLVDVNLVMDKLANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEV 169
Query: 62 VRP 64
+P
Sbjct: 170 AKP 172
>gi|449446458|ref|XP_004140988.1| PREDICTED: uncharacterized protein LOC101208465 [Cucumis sativus]
Length = 394
Score = 67.0 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/65 (50%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AF FG++ + IIMDK SKGY V ++TEE A AL EMNGK+++G ++ VD +P
Sbjct: 325 AFEGFGKLVEVKIIMDKISKRSKGYAFVEYTTEEAASAALKEMNGKIINGWMIVVDIAKP 384
Query: 65 S-RRY 68
S RRY
Sbjct: 385 SPRRY 389
>gi|449525960|ref|XP_004169984.1| PREDICTED: uncharacterized LOC101208465 [Cucumis sativus]
Length = 394
Score = 67.0 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/65 (50%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AF FG++ + IIMDK SKGY V ++TEE A AL EMNGK+++G ++ VD +P
Sbjct: 325 AFEGFGKLVEVKIIMDKISKRSKGYAFVEYTTEEAASAALKEMNGKIINGWMIVVDIAKP 384
Query: 65 S-RRY 68
S RRY
Sbjct: 385 SPRRY 389
>gi|255581040|ref|XP_002531336.1| RNA binding protein, putative [Ricinus communis]
gi|223529058|gb|EEF31043.1| RNA binding protein, putative [Ricinus communis]
Length = 144
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 43/62 (69%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS FGQ+ A +I+D+ SKG+G +T++T EEA+KA MN K LDG V+FVD
Sbjct: 52 LKEAFSPFGQLVDAKVIIDRASGRSKGFGFITYATIEEAEKAREGMNAKFLDGWVIFVDP 111
Query: 62 VR 63
+
Sbjct: 112 AK 113
>gi|224120444|ref|XP_002318331.1| predicted protein [Populus trichocarpa]
gi|222859004|gb|EEE96551.1| predicted protein [Populus trichocarpa]
Length = 181
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AF FGQ+ ++MDK +G+ + + TEEEAQKA+ M+GK LDGRV+FV+
Sbjct: 106 LRNAFQNFGQLVDVNLVMDKVAKRPRGFAFLRYETEEEAQKAIEGMHGKFLDGRVIFVEV 165
Query: 62 VRP 64
+P
Sbjct: 166 AKP 168
>gi|125543335|gb|EAY89474.1| hypothetical protein OsI_11005 [Oryza sativa Indica Group]
Length = 173
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 46/72 (63%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AF+ FGQ+ +A +I D+ SKG+G V ++T EEA+ A EMN K LDG V+FVD
Sbjct: 83 LKNAFAPFGQLLEAKVITDRISGRSKGFGFVRYATLEEAENARQEMNAKFLDGWVIFVDP 142
Query: 62 VRPSRRYNTDVP 73
+P ++ P
Sbjct: 143 AKPRQQKPAPRP 154
>gi|115452257|ref|NP_001049729.1| Os03g0278800 [Oryza sativa Japonica Group]
gi|108707493|gb|ABF95288.1| RNA-binding protein, putative, expressed [Oryza sativa Japonica
Group]
gi|113548200|dbj|BAF11643.1| Os03g0278800 [Oryza sativa Japonica Group]
gi|125543333|gb|EAY89472.1| hypothetical protein OsI_11004 [Oryza sativa Indica Group]
gi|125585797|gb|EAZ26461.1| hypothetical protein OsJ_10350 [Oryza sativa Japonica Group]
Length = 173
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 46/72 (63%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AF+ FGQ+ +A +I D+ SKG+G V ++T EEA+ A EMN K LDG V+FVD
Sbjct: 83 LKNAFAPFGQLLEAKVITDRISGRSKGFGFVRYATLEEAENARQEMNAKFLDGWVIFVDP 142
Query: 62 VRPSRRYNTDVP 73
+P ++ P
Sbjct: 143 AKPRQQKPAPRP 154
>gi|375144786|ref|YP_005007227.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
gi|361058832|gb|AEV97823.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
Length = 102
Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 44/63 (69%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+A FSQ+GQV+ A +IMD+ S+G+G V S++EEA+KA+ E+ GK ++GR L V
Sbjct: 17 LAKLFSQYGQVSSAKVIMDRETGRSRGFGFVEMSSDEEARKAIKELEGKPVEGRSLSVSE 76
Query: 62 VRP 64
RP
Sbjct: 77 ARP 79
>gi|388519245|gb|AFK47684.1| unknown [Lotus japonicus]
Length = 138
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 44/63 (69%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AF+ FGQ+ +A +I D+ SKG+G V++++ EEA+KA MN K LDG V+FVD
Sbjct: 47 LNEAFAPFGQLIEAKVITDRASGRSKGFGFVSYASIEEAEKAGKGMNAKFLDGWVIFVDP 106
Query: 62 VRP 64
+P
Sbjct: 107 AKP 109
>gi|449448655|ref|XP_004142081.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Cucumis sativus]
Length = 146
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 40/57 (70%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+AFS FGQ+ A ++ D+ SKG+ VT+ST +EA+KA EMN K LDG V+FVD
Sbjct: 58 EAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWVIFVD 114
>gi|242036137|ref|XP_002465463.1| hypothetical protein SORBIDRAFT_01g039290 [Sorghum bicolor]
gi|241919317|gb|EER92461.1| hypothetical protein SORBIDRAFT_01g039290 [Sorghum bicolor]
Length = 169
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 42/60 (70%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AF+ FG++ +A ++ D+ SKG+G V ++T EEA+KA EMN K LDG V+FVD +P
Sbjct: 82 AFAPFGRILEAKVVTDRVSGRSKGFGFVRYATIEEAEKARQEMNAKFLDGWVIFVDPAKP 141
>gi|449516497|ref|XP_004165283.1| PREDICTED: glycine-rich RNA-binding protein 2-like, partial
[Cucumis sativus]
Length = 100
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 40/57 (70%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+AFS FGQ+ A ++ D+ SKG+ VT+ST +EA+KA EMN K LDG V+FVD
Sbjct: 12 EAFSSFGQLADAKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWVIFVD 68
>gi|326490373|dbj|BAJ84850.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 299
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 43/58 (74%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ DAFS +GQVT+A +IMD+ S+G+G VTF++ EEA A+T M+GK L GR++ V
Sbjct: 47 LGDAFSNYGQVTEAKVIMDRESGRSRGFGFVTFTSSEEAGAAITGMDGKDLQGRIVRV 104
>gi|225439737|ref|XP_002274178.1| PREDICTED: glycine-rich RNA-binding protein 2 [Vitis vinifera]
gi|297741476|emb|CBI32608.3| unnamed protein product [Vitis vinifera]
Length = 140
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 43/62 (69%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS FGQ+ +A +I D+ SKG+G VT++T EEA+KA MN K LDG V+FVD
Sbjct: 50 LKEAFSPFGQLLEAKVITDRVSGRSKGFGFVTYTTLEEAEKAREGMNAKFLDGWVIFVDP 109
Query: 62 VR 63
+
Sbjct: 110 AK 111
>gi|147867424|emb|CAN83272.1| hypothetical protein VITISV_001132 [Vitis vinifera]
Length = 408
Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AF FG++ + IIMDK SKGY + +STEE A AL EMNGK+++G ++ VD +P
Sbjct: 335 AFEGFGELVEVKIIMDKISKRSKGYAFIEYSTEEAASAALKEMNGKIINGWMIVVDVAKP 394
Query: 65 S-RRYNTDVP 73
+ ++Y+ P
Sbjct: 395 TPQKYSRSRP 404
>gi|116792076|gb|ABK26221.1| unknown [Picea sitchensis]
Length = 151
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS+FG+V +A ++ DK SKG+ V ++T+EEA K M+GK LDG V+F D
Sbjct: 63 LREAFSKFGRVLEARVVTDKMNGVSKGFAFVRYATQEEADKGKEGMDGKFLDGWVIFADY 122
Query: 62 VRPSRRYNTDVP 73
RP D P
Sbjct: 123 ARPRPPRTYDNP 134
>gi|15219486|ref|NP_177494.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|11120799|gb|AAG30979.1|AC012396_15 RNA-binding glycine-rich protein, putative [Arabidopsis thaliana]
gi|62867629|gb|AAY17418.1| At1g73530 [Arabidopsis thaliana]
gi|114050615|gb|ABI49457.1| At1g73530 [Arabidopsis thaliana]
gi|332197351|gb|AEE35472.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 181
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 40/62 (64%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D F QFG + ++MDK N KG+ + + TEEEA KA+ M+GK LDGRV+FV+
Sbjct: 93 LRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEE 152
Query: 62 VR 63
+
Sbjct: 153 AK 154
>gi|242080503|ref|XP_002445020.1| hypothetical protein SORBIDRAFT_07g002960 [Sorghum bicolor]
gi|241941370|gb|EES14515.1| hypothetical protein SORBIDRAFT_07g002960 [Sorghum bicolor]
Length = 140
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 41/61 (67%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
DAF++FG+V A ++ D+ SKG+G V ++T EEA K + M+GK LDG V+F + R
Sbjct: 53 DAFAKFGEVVHARVVTDRVSGFSKGFGFVRYATTEEATKGIEGMDGKFLDGWVIFAEYAR 112
Query: 64 P 64
P
Sbjct: 113 P 113
>gi|297819134|ref|XP_002877450.1| hypothetical protein ARALYDRAFT_905782 [Arabidopsis lyrata subsp.
lyrata]
gi|297323288|gb|EFH53709.1| hypothetical protein ARALYDRAFT_905782 [Arabidopsis lyrata subsp.
lyrata]
Length = 102
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 46/67 (68%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
FS FGQ+ +A +I D KG+G +TF +E++A+KAL ++GK+++GR++FV+ + S
Sbjct: 27 FSPFGQIKEARLIRDSETQRPKGFGFITFESEDDARKALKSLDGKIVEGRLIFVEVAKSS 86
Query: 66 RRYNTDV 72
TD+
Sbjct: 87 EEVTTDI 93
>gi|297842099|ref|XP_002888931.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297334772|gb|EFH65190.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 181
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 41/62 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D F QFG++ ++MDK N +G+ + + TEEEA KA+ M+GK LDGRV+FV+
Sbjct: 93 LRDTFEQFGKLIHMNLVMDKVANRPRGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEE 152
Query: 62 VR 63
+
Sbjct: 153 AK 154
>gi|226529880|ref|NP_001150360.1| RNA binding protein [Zea mays]
gi|195638638|gb|ACG38787.1| RNA binding protein [Zea mays]
gi|414866145|tpg|DAA44702.1| TPA: RNA binding protein [Zea mays]
Length = 166
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 42/60 (70%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AF+ FG++ +A ++ D+ SKG+G V ++T EEA++A EMN K LDG V+FVD +P
Sbjct: 79 AFAPFGRLLEAKVVTDRVSGRSKGFGFVRYATIEEAERARQEMNAKFLDGWVIFVDPAKP 138
>gi|118474079|ref|YP_892397.1| RNA-binding region RNP-1 [Campylobacter fetus subsp. fetus 82-40]
gi|424821065|ref|ZP_18246103.1| RNA-binding region RNP-1 [Campylobacter fetus subsp. venerealis
NCTC 10354]
gi|118413305|gb|ABK81725.1| RNA-binding region RNP-1 [Campylobacter fetus subsp. fetus 82-40]
gi|342327844|gb|EGU24328.1| RNA-binding region RNP-1 [Campylobacter fetus subsp. venerealis
NCTC 10354]
Length = 82
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + FS FG+VT+A I+ DK N SKG+G V S++E+A+KA+ NGK + GR L V+
Sbjct: 18 LREVFSSFGEVTRAKIVKDKETNRSKGFGFVEMSSDEQAKKAIEGTNGKEVGGRALRVNE 77
Query: 62 VRP 64
RP
Sbjct: 78 ARP 80
>gi|375108277|ref|ZP_09754538.1| RRM domain-containing RNA-binding protein [Burkholderiales
bacterium JOSHI_001]
gi|374669008|gb|EHR73793.1| RRM domain-containing RNA-binding protein [Burkholderiales
bacterium JOSHI_001]
Length = 167
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AFSQFG VT A ++MD+ SKG+G V T EAQ A+ MNG+ L+GR + V+ RP
Sbjct: 22 AFSQFGTVTSAKVMMDRETGRSKGFGFVEMGTGAEAQAAINGMNGQPLEGRAVVVNEARP 81
>gi|225464121|ref|XP_002264164.1| PREDICTED: uncharacterized protein LOC100265361 [Vitis vinifera]
Length = 409
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AF FG++ + IIMDK SKGY + ++TEE A AL EMNGK+++G ++ VD +P
Sbjct: 336 AFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKP 395
Query: 65 S-RRYNTDVP 73
+ ++Y+ P
Sbjct: 396 TPQKYSRSRP 405
>gi|296087958|emb|CBI35241.3| unnamed protein product [Vitis vinifera]
Length = 315
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AF FG++ + IIMDK SKGY + ++TEE A AL EMNGK+++G ++ VD +P
Sbjct: 242 AFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKP 301
Query: 65 S-RRYNTDVP 73
+ ++Y+ P
Sbjct: 302 TPQKYSRSRP 311
>gi|356576299|ref|XP_003556270.1| PREDICTED: uncharacterized protein LOC100791652 [Glycine max]
Length = 386
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/61 (45%), Positives = 41/61 (67%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AF FG++ + +IMDK SKGY V ++TEE A AL EMNGK+++G ++ VD +P
Sbjct: 316 AFEGFGELVEVKVIMDKISKRSKGYAFVEYTTEEAASAALKEMNGKIINGWMIVVDVAKP 375
Query: 65 S 65
+
Sbjct: 376 N 376
>gi|357454123|ref|XP_003597342.1| Cold-inducible RNA-binding protein [Medicago truncatula]
gi|355486390|gb|AES67593.1| Cold-inducible RNA-binding protein [Medicago truncatula]
Length = 142
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 44/59 (74%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
FS FG +T+AT+I D+ KG+G V++ +E EA+KA +NG+++DGR++FV++ +P
Sbjct: 80 FSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIEAEKARKALNGRIVDGRLIFVEHAKP 138
>gi|255584774|ref|XP_002533105.1| cold-inducible RNA binding protein, putative [Ricinus communis]
gi|223527096|gb|EEF29277.1| cold-inducible RNA binding protein, putative [Ricinus communis]
Length = 94
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 40/55 (72%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
FS FG V +A +++D KG+G VTF +E +AQKAL MNG+++DGR+LFV+
Sbjct: 27 FSPFGIVKEARLVLDPRTQKPKGFGFVTFDSESQAQKALKAMNGRIVDGRLLFVE 81
>gi|9757907|dbj|BAB08354.1| unnamed protein product [Arabidopsis thaliana]
Length = 112
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 44/58 (75%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
F+ FGQ+T++ +I D+ KG+G +TF +E++AQKAL +NGK+++GR++FV+ +
Sbjct: 41 FAPFGQITESRLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLIFVETAK 98
>gi|256423338|ref|YP_003123991.1| RNP-1 like RNA-binding protein [Chitinophaga pinensis DSM 2588]
gi|256038246|gb|ACU61790.1| RNP-1 like RNA-binding protein [Chitinophaga pinensis DSM 2588]
Length = 92
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 5/74 (6%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + FS++G V+ A +I+DK N S+G+G VT + EA+KA+ EMNG L+DG+ +
Sbjct: 17 LNNHFSRYGVVSSANVIIDKFTNRSRGFGFVTMPNDTEAEKAIQEMNGSLIDGKTIAASQ 76
Query: 62 VR-----PSRRYNT 70
R P R YN
Sbjct: 77 ARPREEKPGRSYNN 90
>gi|333381249|ref|ZP_08472931.1| hypothetical protein HMPREF9455_01097 [Dysgonomonas gadei ATCC
BAA-286]
gi|332830219|gb|EGK02847.1| hypothetical protein HMPREF9455_01097 [Dysgonomonas gadei ATCC
BAA-286]
Length = 107
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS++G++T A +IMDK SKGYG V + QKA+ E+NG DGR + V
Sbjct: 17 LKDLFSEYGEITSAKVIMDKATGRSKGYGFVELADNAAGQKAIEELNGAEYDGRTISVSE 76
Query: 62 VRP 64
RP
Sbjct: 77 ARP 79
>gi|326493798|dbj|BAJ85361.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 175
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 42/62 (67%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AFSQ+G++ A II D+ S+G+G VTF +EE ++A+ EMNGK LDGR + V+ +
Sbjct: 25 AFSQYGEILDAKIINDRETGRSRGFGFVTFGSEESMRQAIEEMNGKELDGRSITVNEAQS 84
Query: 65 SR 66
R
Sbjct: 85 RR 86
>gi|357454121|ref|XP_003597341.1| Cold-inducible RNA-binding protein [Medicago truncatula]
gi|355486389|gb|AES67592.1| Cold-inducible RNA-binding protein [Medicago truncatula]
gi|388509994|gb|AFK43063.1| unknown [Medicago truncatula]
Length = 89
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 44/59 (74%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
FS FG +T+AT+I D+ KG+G V++ +E EA+KA +NG+++DGR++FV++ +P
Sbjct: 27 FSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIEAEKARKALNGRIVDGRLIFVEHAKP 85
>gi|387913830|gb|AFK10524.1| cold inducible RNA binding protein isoform 3 [Callorhinchus
milii]
gi|392873312|gb|AFM85488.1| cold inducible RNA binding protein isoform 3 [Callorhinchus
milii]
gi|392873324|gb|AFM85494.1| cold inducible RNA binding protein isoform 3 [Callorhinchus
milii]
gi|392873420|gb|AFM85542.1| cold inducible RNA binding protein isoform 3 [Callorhinchus
milii]
gi|392873526|gb|AFM85595.1| cold inducible RNA binding protein isoform 3 [Callorhinchus
milii]
gi|392873598|gb|AFM85631.1| cold inducible RNA binding protein isoform 3 [Callorhinchus
milii]
gi|392877296|gb|AFM87480.1| cold inducible RNA binding protein isoform 3 [Callorhinchus
milii]
Length = 136
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 43/59 (72%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ + FS++GQV++ II D+ TS+G+G VTF + ++AQ ALT MNG+ L+GR + VD
Sbjct: 21 LEEVFSEYGQVSEVRIIRDRDTGTSRGFGFVTFESPDDAQDALTSMNGRSLEGRQIRVD 79
>gi|383760540|ref|YP_005439526.1| RNP-1 like RNA-binding protein, Glycine-rich [Rubrivivax
gelatinosus IL144]
gi|381381210|dbj|BAL98027.1| RNP-1 like RNA-binding protein, Glycine-rich [Rubrivivax
gelatinosus IL144]
Length = 161
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ AF+QFG VT A ++MD+ SKG+G V ++ EAQ A+ MNG+ L+GR + V+
Sbjct: 19 LQQAFAQFGTVTSAKVMMDRETGRSKGFGFVEMGSDAEAQAAINGMNGQPLEGRAIVVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|353241625|emb|CCA73428.1| related to NSR1-nuclear localization sequence binding protein
[Piriformospora indica DSM 11827]
Length = 657
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
F G+V +A++ MD+ SKG+G V+FST E A+KA+ EMNGK +DGR + V+ P
Sbjct: 411 FEACGEVVRASVQMDRQTGRSKGFGYVSFSTPEAAEKAIAEMNGKEIDGRAVNVNAATPK 470
Query: 66 RRYNTDVPLARLK 78
T P R K
Sbjct: 471 ----TPNPAGRAK 479
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
M+ + F + G + + D+ KG+G V F++ E A+ A +NGK + GR + +D
Sbjct: 505 MLWETFGEHGDIVSVRLPTDRETGQMKGFGYVEFTSVENAKSAFNALNGKDIAGRNIRLD 564
Query: 61 NVRP 64
+P
Sbjct: 565 FSQP 568
>gi|332525684|ref|ZP_08401833.1| RNA-binding region RNP-1 [Rubrivivax benzoatilyticus JA2]
gi|332109243|gb|EGJ10166.1| RNA-binding region RNP-1 [Rubrivivax benzoatilyticus JA2]
Length = 145
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 40/60 (66%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AF+QFG VT A ++MD+ SKG+G V ++ EAQ A+ MNG+ L+GR + V+ RP
Sbjct: 9 AFAQFGTVTSAKVMMDRETGRSKGFGFVEMGSDAEAQAAINGMNGQSLEGRAVVVNEARP 68
>gi|59802519|gb|AAX07503.1| unknown [Gemmata sp. Wa1-1]
Length = 122
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 43/65 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D F+ +G V A +IMD+ SKG+G V T++EAQ A+T M+G++++GR L V+
Sbjct: 56 LQDMFTPYGSVVSAQVIMDRDTGRSKGFGFVEMGTDQEAQAAITGMHGQVIEGRPLTVNE 115
Query: 62 VRPSR 66
RP +
Sbjct: 116 ARPKK 120
>gi|418528344|ref|ZP_13094294.1| RNA-binding protein RNP-3 [Comamonas testosteroni ATCC 11996]
gi|371454720|gb|EHN67722.1| RNA-binding protein RNP-3 [Comamonas testosteroni ATCC 11996]
Length = 163
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ AFSQFG V A ++M++ SKG+G V ++E EAQ A+ MNG+ L GR L V+
Sbjct: 19 LEQAFSQFGAVASARVMMERDTGRSKGFGFVEMASEAEAQAAIQGMNGQPLGGRSLVVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|728594|emb|CAA88558.1| glycine rich protein, RNA binding protein [Hordeum vulgare subsp.
vulgare]
Length = 173
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 42/62 (67%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AFSQ+G++ A II D+ S+G+G VTF +EE ++A+ EMNGK LDGR + V+ +
Sbjct: 25 AFSQYGEILDAKIINDRETGRSRGFGFVTFGSEESMRQAIEEMNGKELDGRQVTVNEAQS 84
Query: 65 SR 66
R
Sbjct: 85 RR 86
>gi|299531903|ref|ZP_07045303.1| RNA-binding protein RNP-3 [Comamonas testosteroni S44]
gi|298720078|gb|EFI61035.1| RNA-binding protein RNP-3 [Comamonas testosteroni S44]
Length = 162
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ AFSQFG V A ++M++ SKG+G V ++E EAQ A+ MNG+ L GR L V+
Sbjct: 19 LEQAFSQFGAVASARVMMERDTGRSKGFGFVEMASEAEAQAAIQGMNGQPLGGRSLVVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|264680852|ref|YP_003280762.1| RNA-binding protein RNP-3 [Comamonas testosteroni CNB-2]
gi|262211368|gb|ACY35466.1| RNA-binding protein RNP-3 [Comamonas testosteroni CNB-2]
Length = 164
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ AFSQFG V A ++M++ SKG+G V ++E EAQ A+ MNG+ L GR L V+
Sbjct: 19 LEQAFSQFGAVASARVMMERDTGRSKGFGFVEMASEAEAQAAIQGMNGQPLGGRSLVVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|67483728|ref|XP_657084.1| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|56474323|gb|EAL51698.1| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|449705266|gb|EMD45349.1| RNA recognition motif domain containing protein [Entamoeba
histolytica KU27]
Length = 136
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 40/60 (66%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AF +FG VT ++ D+ SKG+G VTF +E+A+KA+ EMN + L+GR + VD RP
Sbjct: 21 AFEKFGTVTDCKVVTDRDSQRSKGFGFVTFEKDEDAKKAIEEMNEQELEGRRIKVDVSRP 80
>gi|357152879|ref|XP_003576265.1| PREDICTED: glycine-rich RNA-binding protein blt801-like
[Brachypodium distachyon]
Length = 165
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 41/65 (63%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ AFS FG++ A II D+ S+G+G VTF+TEE Q A+ MNGK LDGR + V+
Sbjct: 20 LQSAFSNFGEILDAKIIQDRETGRSRGFGFVTFATEESMQAAIEGMNGKELDGRSITVNQ 79
Query: 62 VRPSR 66
+ R
Sbjct: 80 AQSRR 84
>gi|974605|gb|AAA75104.1| single-stranded nucleic acid binding protein [Triticum aestivum]
Length = 167
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 43/65 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ AFSQ+G++ A II D+ S+G+G VTF +EE ++A+ EMNGK LDGR + V+
Sbjct: 22 LQQAFSQYGEILDAKIINDRETGRSRGFGFVTFGSEESMRQAIEEMNGKELDGRNITVNE 81
Query: 62 VRPSR 66
+ R
Sbjct: 82 AQSRR 86
>gi|121596409|ref|YP_988305.1| RNP-1 like RNA-binding protein [Acidovorax sp. JS42]
gi|120608489|gb|ABM44229.1| RNP-1 like RNA-binding protein [Acidovorax sp. JS42]
Length = 149
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ AFSQFG VT A ++M++ SKG+G V ++ EAQ+A+ MNG+ L GR + V+
Sbjct: 19 LEQAFSQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQEAINGMNGQSLGGRSIVVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|125548231|gb|EAY94053.1| hypothetical protein OsI_15830 [Oryza sativa Indica Group]
Length = 113
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGK 50
+A+AFSQ+GQV +ATI+ DK N KG+G V F++EE A KA EMNGK
Sbjct: 53 LAEAFSQYGQVLEATIVTDKMTNRPKGFGFVKFASEEAANKAKEEMNGK 101
>gi|224060337|ref|XP_002300149.1| predicted protein [Populus trichocarpa]
gi|222847407|gb|EEE84954.1| predicted protein [Populus trichocarpa]
Length = 133
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDG---RVLF 58
+ DAFS FG+VT+A +IMD+ S+G+G V + + E A +AL+ M+G+ L G RV F
Sbjct: 52 LKDAFSGFGEVTEARVIMDRETGRSRGFGFVHYDSVENASEALSAMDGQNLGGRTVRVSF 111
Query: 59 VDNVRPSRRYN 69
+ RP + YN
Sbjct: 112 AEERRPPQSYN 122
>gi|118487563|gb|ABK95608.1| unknown [Populus trichocarpa]
Length = 133
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDG---RVLF 58
+ DAFS FG+VT+A +IMD+ S+G+G V + + E A +AL+ M+G+ L G RV F
Sbjct: 52 LKDAFSGFGEVTEARVIMDRETGRSRGFGFVHYDSVENASEALSAMDGQNLGGRTVRVSF 111
Query: 59 VDNVRPSRRYN 69
+ RP + YN
Sbjct: 112 AEERRPPQSYN 122
>gi|333917516|ref|YP_004491248.1| RNP-1 like RNA-binding protein [Delftia sp. Cs1-4]
gi|333747716|gb|AEF92893.1| RNP-1 like RNA-binding protein [Delftia sp. Cs1-4]
Length = 179
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ AFSQFG VT A ++M++ SKG+G V ++ EAQ A+ MNG+ L GR L V+
Sbjct: 19 LEQAFSQFGAVTSARVMMERDTGRSKGFGFVEMGSDAEAQAAVQGMNGQPLGGRSLVVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|160901478|ref|YP_001567060.1| RNP-1 like RNA-binding protein [Delftia acidovorans SPH-1]
gi|160367062|gb|ABX38675.1| RNP-1 like RNA-binding protein [Delftia acidovorans SPH-1]
Length = 176
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ AFSQFG VT A ++M++ SKG+G V ++ EAQ A+ MNG+ L GR L V+
Sbjct: 19 LEQAFSQFGAVTSARVMMERDTGRSKGFGFVEMGSDAEAQAAVQGMNGQPLGGRSLVVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|407033602|gb|EKE36900.1| RNA recognition motif (RRM, RBD, or RNP domain) containing
protein [Entamoeba nuttalli P19]
Length = 136
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 40/60 (66%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AF +FG VT ++ D+ SKG+G VTF +E+A+KA+ EMN + L+GR + VD RP
Sbjct: 21 AFEKFGTVTDCKVVTDRDSQRSKGFGFVTFEKDEDAKKAIEEMNEQELEGRRIKVDVSRP 80
>gi|222112647|ref|YP_002554911.1| rnp-1 like RNA-binding protein [Acidovorax ebreus TPSY]
gi|221732091|gb|ACM34911.1| RNP-1 like RNA-binding protein [Acidovorax ebreus TPSY]
Length = 155
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ AFSQFG VT A ++M++ SKG+G V ++ EAQ+A+ MNG+ L GR + V+
Sbjct: 19 LEQAFSQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQEAINGMNGQSLGGRSIVVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|347819854|ref|ZP_08873288.1| RNP-1 like RNA-binding protein [Verminephrobacter aporrectodeae
subsp. tuberculatae At4]
Length = 168
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ AF QFG VT A ++M++ SKG+G V ++ EAQ A+T MNG+ L GR + V+
Sbjct: 19 LEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAITGMNGQPLGGRSIVVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|218195435|gb|EEC77862.1| hypothetical protein OsI_17125 [Oryza sativa Indica Group]
Length = 152
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 43/60 (71%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
+AF +FGQ+T+ ++M++ +G+ +++++EEE++ A+ M GK LDGRV+FV+ R
Sbjct: 88 NAFERFGQLTEVNLVMERVAKRPRGFAFLSYASEEESKNAMEGMQGKFLDGRVIFVEVAR 147
>gi|222629430|gb|EEE61562.1| hypothetical protein OsJ_15917 [Oryza sativa Japonica Group]
Length = 149
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 43/60 (71%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
+AF +FGQ+T+ ++M++ +G+ +++++EEE++ A+ M GK LDGRV+FV+ R
Sbjct: 85 NAFERFGQLTEVNLVMERVAKRPRGFAFLSYASEEESKNAMEGMQGKFLDGRVIFVEVAR 144
>gi|194337130|ref|YP_002018924.1| RNP-1 like RNA-binding protein [Pelodictyon phaeoclathratiforme
BU-1]
gi|194309607|gb|ACF44307.1| RNP-1 like RNA-binding protein [Pelodictyon phaeoclathratiforme
BU-1]
Length = 90
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ DAFS+FGQV A+II DK SKG+G V E EA++A+ MN K L+GR + V+
Sbjct: 17 LRDAFSEFGQVESASIINDKFSGRSKGFGFVDMPNESEAREAIESMNEKDLNGRTIKVNE 76
Query: 62 VRP 64
+P
Sbjct: 77 AKP 79
>gi|15239676|ref|NP_200269.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|9758950|dbj|BAB09337.1| unnamed protein product [Arabidopsis thaliana]
gi|18175762|gb|AAL59923.1| unknown protein [Arabidopsis thaliana]
gi|20465513|gb|AAM20239.1| unknown protein [Arabidopsis thaliana]
gi|21553374|gb|AAM62467.1| unknown [Arabidopsis thaliana]
gi|332009129|gb|AED96512.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 156
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AF+QFG+V A ++ D+ SKG+G V ++T E++ K + M+GK LDG V+F + RP
Sbjct: 75 AFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYARP 134
Query: 65 SRRYNTDVP 73
+ + P
Sbjct: 135 REQSQSYQP 143
>gi|297792921|ref|XP_002864345.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297310180|gb|EFH40604.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 156
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 40/60 (66%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AF+QFG+V A ++ D+ SKG+G V ++T E++ K + M+GK LDG V+F + RP
Sbjct: 75 AFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYARP 134
>gi|326503608|dbj|BAJ86310.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS FG++T I+ D+ SKG G V+FST EEA +ALTEMNGK++ G+ L+V
Sbjct: 420 LRELFSNFGKITSCKIMRDQ-NGVSKGSGFVSFSTREEASQALTEMNGKMISGKPLYV 476
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + + MD SKG+G V + EE AQ A+ +NG L++ + ++V
Sbjct: 226 LHDTFSAFGAILSCKVAMDD-IGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPVYV 282
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 37/56 (66%), Gaps = 5/56 (8%)
Query: 6 FSQFGQVTKATII--MDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS++G +T A ++ MD GK S+ +G V F + ++A +A+ E+NGK ++ + +V
Sbjct: 321 FSEYGTITSAVVMIGMD-GK--SRCFGFVNFESPDDAARAVEELNGKKINDKEWYV 373
>gi|449468518|ref|XP_004151968.1| PREDICTED: nucleolysin TIAR-like [Cucumis sativus]
gi|449496932|ref|XP_004160266.1| PREDICTED: nucleolysin TIAR-like [Cucumis sativus]
Length = 174
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 42/63 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AF++FG+V A ++ D+ SKG+G V ++T E+A K + M+GK LDG V+F +
Sbjct: 95 LHEAFAKFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEY 154
Query: 62 VRP 64
RP
Sbjct: 155 ARP 157
>gi|326491331|dbj|BAK05765.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 262
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 44/63 (69%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ DAFS++G+VT+A ++MDK S+G+ VTF ++ ++A+ +MNG L+GR + VD
Sbjct: 59 LKDAFSKYGKVTEAKVVMDKFSGRSRGFAFVTFDEKKAMEEAIEDMNGLDLEGRAITVDK 118
Query: 62 VRP 64
+P
Sbjct: 119 AQP 121
>gi|115529229|dbj|BAF34340.1| putative glycine-rich RNA-binding protein [Dianthus caryophyllus]
Length = 163
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 43/59 (72%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+A+AF++FG+VT + II D+ S+G+G VTF+ E+ + A+ EMNGK LDGR + V+
Sbjct: 22 LAEAFNKFGEVTDSKIINDRETGRSRGFGFVTFANEQSMRDAIDEMNGKELDGRSITVN 80
>gi|15231311|ref|NP_190188.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|7630030|emb|CAB88326.1| RNA binding protein-like [Arabidopsis thaliana]
gi|46931202|gb|AAT06405.1| At3g46020 [Arabidopsis thaliana]
gi|50253530|gb|AAT71967.1| At3g46020 [Arabidopsis thaliana]
gi|332644581|gb|AEE78102.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 102
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 41/55 (74%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
FS FGQ+ +A +I D KG+G +TF +E++A+KAL ++GK++DGR++FV+
Sbjct: 27 FSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSLDGKIVDGRLIFVE 81
>gi|313229163|emb|CBY23748.1| unnamed protein product [Oikopleura dioica]
Length = 570
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ +AF QFG +T A +I D SKG+G V FS+ EEA KA+TEMNG++ G+ L+V
Sbjct: 302 LREAFKQFGNITSAKVITDLN-GRSKGFGFVCFSSPEEATKAVTEMNGRIFGGKPLYV 358
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D N SKG+G V + ++E AQ+A+ ++NG L++ + +FV
Sbjct: 106 LYDTFSSFGNILSCKVVCDI--NGSKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFV 161
Score = 40.0 bits (92), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F QFG+V +I D+ SK +G ++F ++A+ A+ M+ K ++G+ L+
Sbjct: 202 FEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVEIMHEKEIEGKKLYC 255
>gi|223974749|gb|ACN31562.1| unknown [Zea mays]
Length = 326
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
+AFS +G+V ++ II+D+ S+G+G VTFSTEE + A+ MNGK LDGR + V+ +
Sbjct: 26 NAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRNAIEGMNGKELDGRNITVNEAQ 85
Query: 64 PSR 66
R
Sbjct: 86 FRR 88
>gi|313219101|emb|CBY43303.1| unnamed protein product [Oikopleura dioica]
Length = 512
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ +AF QFG +T A +I D SKG+G V FS+ EEA KA+TEMNG++ G+ L+V
Sbjct: 302 LREAFKQFGNITSAKVITDLN-GRSKGFGFVCFSSPEEATKAVTEMNGRIFGGKPLYV 358
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D N SKG+G V + ++E AQ+A+ ++NG L++ + +FV
Sbjct: 106 LYDTFSSFGNILSCKVVCDI--NGSKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFV 161
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 34/58 (58%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F QFG+V +I D+ SK +G ++F ++A+ A+ M+ K ++G+ L+
Sbjct: 198 LLENFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVEIMHEKEIEGKKLYC 255
>gi|326511990|dbj|BAJ95976.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 530
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS FG++T I+ D+ SKG G V+FST EEA +ALTEMNGK++ G+ L+V
Sbjct: 420 LRELFSNFGKITSCKIMRDQ-NGVSKGSGFVSFSTREEASQALTEMNGKMISGKPLYV 476
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + + MD SKG+G V + EE AQ A+ +NG L++ + ++V
Sbjct: 226 LHDTFSAFGAILSCKVAMDD-IGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPVYV 282
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 37/56 (66%), Gaps = 5/56 (8%)
Query: 6 FSQFGQVTKATII--MDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS++G +T A ++ MD GK S+ +G V F + ++A +A+ E+NGK ++ + +V
Sbjct: 321 FSEYGTITSAVVMIGMD-GK--SRCFGFVNFESPDDAARAVEELNGKKINDKEWYV 373
>gi|224110196|ref|XP_002315444.1| predicted protein [Populus trichocarpa]
gi|222864484|gb|EEF01615.1| predicted protein [Populus trichocarpa]
Length = 311
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AF FG++ + IIMDK SKGY V ++TEE A AL EMNGK+++G ++ VD +
Sbjct: 238 AFEGFGELVEVKIIMDKISKRSKGYAFVKYTTEEAASSALKEMNGKIINGWMIVVDVAKS 297
Query: 65 S-RRYNTDVP 73
+ RY+ P
Sbjct: 298 NPPRYSRGRP 307
>gi|226498016|ref|NP_001151732.1| RNA binding protein [Zea mays]
gi|195649405|gb|ACG44170.1| RNA binding protein [Zea mays]
Length = 147
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 41/57 (71%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
DAF +FG +T+ ++MD+ +G+ ++++ EEEA+ A+ M+GK LDGRV+FV+
Sbjct: 83 DAFEKFGDLTEVCLVMDRVAKRPRGFAFLSYTGEEEARGAMEGMHGKFLDGRVIFVE 139
>gi|451798952|gb|AGF69179.1| polyadenylate-binding protein 2-like protein, partial [Triticum
aestivum]
Length = 497
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS FG++T I+ D+ SKG G V+FST EEA +ALTEMNGK++ G+ L+V
Sbjct: 221 LRELFSNFGKITSCKIMRDQ-NGVSKGSGFVSFSTREEASQALTEMNGKMISGKPLYV 277
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + + MD SKG+G V + EE AQ A+ +NG L++ + ++V
Sbjct: 27 LHDTFSAFGAILSCKVAMDD-IGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPVYV 83
>gi|221069836|ref|ZP_03545941.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
gi|220714859|gb|EED70227.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
Length = 158
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ AF QFG V A ++M++ SKG+G V ++E EAQ A+ MNG+ L GR L V+
Sbjct: 19 LEQAFGQFGAVASARVMMERDTGRSKGFGFVEMASEAEAQAAIQGMNGQPLGGRSLVVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|441613453|ref|XP_004088139.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 638
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 41/55 (74%), Gaps = 2/55 (3%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
AFS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 313 AFSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKDLFGKFGPTLSVKVMTDQS-GKSKGFGFVSFEKHEDAQKAVDEMNGKELNGKQIYV 263
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D S FG V ++ D+ N SKGYG V F T E A++A+ +MNG L+ R +FV
Sbjct: 115 LYDTVSAFGNVLSCKVVCDE--NGSKGYGFVHFETREAAERAIEKMNGIPLNDRKVFV 170
>gi|356543191|ref|XP_003540046.1| PREDICTED: nucleolin-like [Glycine max]
Length = 145
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 41/63 (65%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + F++FG+V A ++ D+ SKG+G V ++T EEA K + M+GK LDG V+F +
Sbjct: 65 LREEFAKFGEVVHARVVTDRVSGYSKGFGFVQYATIEEAAKGIEGMDGKFLDGWVIFAEY 124
Query: 62 VRP 64
RP
Sbjct: 125 ARP 127
>gi|402901594|ref|XP_003913731.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 636
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 41/55 (74%), Gaps = 2/55 (3%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
AFS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 313 AFSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
++ D S FG + ++ D+ N SKGYG V F T E A++A+ +MNG LL+ R +FV
Sbjct: 114 VLYDTVSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFV 170
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|297274127|ref|XP_002800732.1| PREDICTED: polyadenylate-binding protein 1 [Macaca mulatta]
Length = 605
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 41/55 (74%), Gaps = 2/55 (3%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
AFS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 281 AFSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 333
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 175 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 231
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 14 KATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
++ ++ D+ N SKGYG V F T E A++A+ +MNG LL+ R +FV
Sbjct: 95 RSGVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFV 138
>gi|357126492|ref|XP_003564921.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Brachypodium distachyon]
Length = 156
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD- 60
+ +AFS FG+V +A +I D+ S+G+G V FS EE+A+KA + M+G+ LDGR + V+
Sbjct: 53 LKEAFSSFGEVYEARVITDRETGRSRGFGFVEFSNEEDAKKAASSMDGQELDGRSVRVNF 112
Query: 61 -NVRPS 65
N RP+
Sbjct: 113 ANERPA 118
>gi|82802759|gb|ABB92430.1| PABP3 [Chlorocebus sabaeus]
Length = 635
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 41/55 (74%), Gaps = 2/55 (3%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
AFS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 313 AFSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
++ D S FG + ++ D+ N SKGYG V F T E A++A+ +MNG LL+ R +FV
Sbjct: 114 VLYDTASAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV 170
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|395745189|ref|XP_002824146.2| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Pongo
abelii]
Length = 636
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 41/55 (74%), Gaps = 2/55 (3%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
AFS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 313 AFSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D S FG + ++ D+ N SKGYG V F T E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTVSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV 170
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L G+ ++V
Sbjct: 207 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYV 263
>gi|255568010|ref|XP_002524982.1| RNA binding protein, putative [Ricinus communis]
gi|223535726|gb|EEF37389.1| RNA binding protein, putative [Ricinus communis]
Length = 371
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 40/61 (65%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AF FG++ + IIMDK SKGY + ++TEE A AL EMNGK+++G ++ VD +
Sbjct: 298 AFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAANAALKEMNGKIINGWMIVVDVAKT 357
Query: 65 S 65
S
Sbjct: 358 S 358
>gi|440577321|emb|CCI55328.1| PH01B001I13.24 [Phyllostachys edulis]
Length = 196
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 42/59 (71%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ AF +FGQ+T+ ++MD+ +G+ ++++ EEE++ A+ M+GK LDGRV+FV+
Sbjct: 132 LRSAFERFGQLTEVNLVMDRVAKRPRGFAFLSYANEEESKNAMEGMHGKFLDGRVIFVE 190
>gi|355754577|gb|EHH58478.1| hypothetical protein EGM_08341 [Macaca fascicularis]
Length = 637
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 41/55 (74%), Gaps = 2/55 (3%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
AFS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 313 AFSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
++ D S FG + ++ D+ N SKGYG V F T E A++A+ +MNG LL+ R +FV
Sbjct: 114 VLYDTVSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFV 170
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+A+KA+ EMNGK L+G+ ++V
Sbjct: 207 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDARKAVDEMNGKELNGKQIYV 263
>gi|109120204|ref|XP_001091129.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Macaca
mulatta]
Length = 637
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 41/55 (74%), Gaps = 2/55 (3%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
AFS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 313 AFSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
++ D S FG + ++ D+ N SKGYG V F T E A++A+ +MNG LL+ R +FV
Sbjct: 114 VLYDTVSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFV 170
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 263
>gi|381206512|ref|ZP_09913583.1| RNA-binding protein [SAR324 cluster bacterium JCVI-SC AAA005]
Length = 85
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AFSQFG+V+KA++IMD+ N SKG+G V E A+ +NG +DGR V+ +P
Sbjct: 20 AFSQFGKVSKASVIMDRVNNRSKGFGFVEMDDAAEGNSAVEALNGHQIDGRAWKVNEAKP 79
>gi|297793541|ref|XP_002864655.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297310490|gb|EFH40914.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 95
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 42/58 (72%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
F+ FGQ+ +A +I D+ KG+G +TF +E++AQ AL +NGK+++GR++FV+ +
Sbjct: 27 FAPFGQIIEARLIRDQQTQRPKGFGFITFESEDDAQNALKALNGKIVNGRLIFVEAAK 84
>gi|115474735|ref|NP_001060964.1| Os08g0139000 [Oryza sativa Japonica Group]
gi|38636774|dbj|BAD03017.1| putative RNA recognition motif (RRM)-containing protein [Oryza
sativa Japonica Group]
gi|113622933|dbj|BAF22878.1| Os08g0139000 [Oryza sativa Japonica Group]
gi|215767574|dbj|BAG99802.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222639884|gb|EEE68016.1| hypothetical protein OsJ_25986 [Oryza sativa Japonica Group]
Length = 141
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 42/63 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AF++FG+V A ++ D+ SKG+G V ++T E+A K + M+GK LDG V+F +
Sbjct: 52 LKEAFAKFGEVIHARVVTDRVTGFSKGFGFVRYATVEDAAKGIEGMDGKFLDGWVIFAEY 111
Query: 62 VRP 64
RP
Sbjct: 112 ARP 114
>gi|82802751|gb|ABB92426.1| PABP3 [Pan troglodytes]
Length = 632
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 42/58 (72%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ AFS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 310 LQKAFSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D S FG + ++ D+ N SKGYG V F T E A++A+ +MNG LL+GR +FV
Sbjct: 115 LYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFV 170
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|165940926|gb|ABY75308.1| cytoplasmic 1 polyA binding protein [Ovis aries]
Length = 305
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 43 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 94
>gi|124268989|ref|YP_001022993.1| RNA-binding region RNP-1 [Methylibium petroleiphilum PM1]
gi|124261764|gb|ABM96758.1| RNA-binding region RNP-1 [Methylibium petroleiphilum PM1]
Length = 162
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AF +FG VT A ++MD+ SKG+G V ++ EAQ A+ MNG+ L GR + V+ RP
Sbjct: 22 AFGEFGAVTSAKVMMDRDTGRSKGFGFVEMGSDAEAQAAIEGMNGQSLSGRAIVVNEARP 81
>gi|365091634|ref|ZP_09328989.1| RNP-1 like RNA-binding protein [Acidovorax sp. NO-1]
gi|363415945|gb|EHL23069.1| RNP-1 like RNA-binding protein [Acidovorax sp. NO-1]
Length = 192
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ AF QFG VT A ++M++ SKG+G V ++ EAQ A++ MNG+ L GR + V+
Sbjct: 19 LEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAISGMNGQPLGGRSIVVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|114649018|ref|XP_001154541.1| PREDICTED: polyadenylate-binding protein 3 isoform 5 [Pan
troglodytes]
Length = 633
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 42/58 (72%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ AFS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 310 LQKAFSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D S FG + ++ D+ N SKGYG V F T E A++A+ +MNG LL+GR +FV
Sbjct: 115 LYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFV 170
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|426374960|ref|XP_004054321.1| PREDICTED: polyadenylate-binding protein 3 [Gorilla gorilla
gorilla]
Length = 631
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 41/55 (74%), Gaps = 2/55 (3%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
AFS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 313 AFSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D S FG + ++ D+ N SKGYG V F T E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTVSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV 170
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|397482906|ref|XP_003812655.1| PREDICTED: polyadenylate-binding protein 3-like [Pan paniscus]
Length = 634
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 41/55 (74%), Gaps = 2/55 (3%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
AFS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 313 AFSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D S FG + ++ D+ N SKGYG V F T E A++A+ +MNG LL+GR +FV
Sbjct: 115 LYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFV 170
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|82802753|gb|ABB92427.1| PABP3 [Gorilla gorilla]
Length = 630
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 41/55 (74%), Gaps = 2/55 (3%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
AFS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 313 AFSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D S FG + ++ D+ N SKGYG V F T E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTVSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV 170
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|45238849|ref|NP_112241.2| polyadenylate-binding protein 3 [Homo sapiens]
gi|28201852|sp|Q9H361.2|PABP3_HUMAN RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3; AltName:
Full=Testis-specific poly(A)-binding protein
gi|20379668|gb|AAH27617.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|119628765|gb|EAX08360.1| poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|123982576|gb|ABM83029.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|123997243|gb|ABM86223.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|189055351|dbj|BAG36140.1| unnamed protein product [Homo sapiens]
Length = 631
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 41/55 (74%), Gaps = 2/55 (3%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
AFS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 313 AFSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D S FG + ++ D+ N SKGYG V F T E A++A+ +MNG LL+GR +FV
Sbjct: 115 LYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFV 170
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|82802749|gb|ABB92425.1| PABP3 [Homo sapiens]
Length = 630
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 41/55 (74%), Gaps = 2/55 (3%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
AFS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 313 AFSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D S FG + ++ D+ N SKGYG V F T E A++A+ +MNG LL+GR +FV
Sbjct: 115 LYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFV 170
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|82802761|gb|ABB92431.1| PABP3 [Aotus trivirgatus]
Length = 629
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 41/55 (74%), Gaps = 2/55 (3%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
AFS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 313 AFSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D S FG + ++ D+ N SKGYG V F T E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTVSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV 170
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L G+ ++V
Sbjct: 207 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYV 263
>gi|42567949|ref|NP_197404.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332005259|gb|AED92642.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 172
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ FS+FGQVT II ++ S GYG V F+++E+AQ A+ MNGK DGR + V
Sbjct: 93 LKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGKFFDGRFILVKF 152
Query: 62 VRP--SRR 67
+P SRR
Sbjct: 153 GQPGLSRR 160
>gi|73909065|gb|AAH45608.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 41/55 (74%), Gaps = 2/55 (3%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
AFS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 313 AFSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D S FG + ++ D+ N SKGYG V F T E A++A+ +MNG LL+GR +FV
Sbjct: 115 LYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFV 170
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|57997079|emb|CAB66834.2| hypothetical protein [Homo sapiens]
Length = 631
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 41/55 (74%), Gaps = 2/55 (3%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
AFS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 313 AFSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D S FG + ++ D+ N SKGYG V F T E A++A+ +MNG LL+GR +FV
Sbjct: 115 LYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFV 170
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKDLFGKFGPALSVELMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|357122488|ref|XP_003562947.1| PREDICTED: uncharacterized RNA-binding protein C25G10.01-like
[Brachypodium distachyon]
Length = 138
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 43/62 (69%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS+FGQVT+A +I D+ S+G+G V ++T EEA + + M+GK LDG V+F +
Sbjct: 56 LREAFSKFGQVTEARVITDRISGYSRGFGFVKYATVEEAGEGIKGMDGKFLDGWVIFAEY 115
Query: 62 VR 63
+
Sbjct: 116 AK 117
>gi|168034678|ref|XP_001769839.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678948|gb|EDQ65401.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 133
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 40/57 (70%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
DAFS FG VT+ II+D+ S+G+G V F++ EEA+ AL EM+G+ L GR + VD
Sbjct: 63 DAFSSFGTVTEVKIILDRDTGRSRGFGFVNFTSPEEAEVALQEMDGRELAGRQIRVD 119
>gi|334705246|ref|ZP_08521112.1| RNA-binding protein [Aeromonas caviae Ae398]
Length = 81
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
FSQFGQV K II+D+ SKG+G + EA+KA+ E++G + GR + V+ +P
Sbjct: 10 FSQFGQVDKVDIIIDRDTGQSKGFGFIEMPVNGEAEKAIAELHGTEVGGRTITVNQAKP- 68
Query: 66 RRYNTDVPLARLKIH 80
TD P R + H
Sbjct: 69 ---KTDAPRGRPQRH 80
>gi|41053728|ref|NP_957176.1| poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|37590406|gb|AAH59662.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|39645430|gb|AAH63948.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
Length = 634
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++MD G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMDGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS++G ++ D+ S+G+G V+F E+AQ+A+ EMNGK ++G++++V
Sbjct: 207 LKDIFSKYGNAMSIRVMTDEN-GKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYV 263
>gi|168034546|ref|XP_001769773.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678882|gb|EDQ65335.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 134
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 40/57 (70%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
DAFS FG VT+ II+D+ S+G+G V F++ EEA+ AL EM+G+ L GR + VD
Sbjct: 64 DAFSSFGTVTEVKIILDRDTGRSRGFGFVNFTSPEEAEVALQEMDGRELAGRQIRVD 120
>gi|226491121|ref|NP_001143351.1| uncharacterized protein LOC100275970 [Zea mays]
gi|195618716|gb|ACG31188.1| hypothetical protein [Zea mays]
Length = 295
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 43/61 (70%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ DAFS+FG V +A II+D+ S+G+G +TF++ EEA A+T M+GK L GR + V++
Sbjct: 48 LKDAFSEFGNVLEARIIIDRESGRSRGFGFITFTSTEEASAAMTSMDGKELQGRNIRVNH 107
Query: 62 V 62
Sbjct: 108 A 108
>gi|395005503|ref|ZP_10389380.1| RRM domain-containing RNA-binding protein, partial [Acidovorax
sp. CF316]
gi|394316556|gb|EJE53277.1| RRM domain-containing RNA-binding protein, partial [Acidovorax
sp. CF316]
Length = 110
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ AF QFG VT A ++M++ SKG+G V ++ EAQ A+ MNG+ L GR + V+
Sbjct: 19 LEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDPEAQAAINGMNGQPLGGRSIVVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|351725255|ref|NP_001236574.1| uncharacterized protein LOC100527220 [Glycine max]
gi|255631812|gb|ACU16273.1| unknown [Glycine max]
Length = 138
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD- 60
+ DAFS FG V A +I D+ S+G+G V FS +E A AL+ M+GK LDGR + V
Sbjct: 52 LKDAFSGFGDVVDAKVITDRDSGRSRGFGFVNFSNDESASSALSAMDGKDLDGRSIRVSY 111
Query: 61 -NVRP 64
N RP
Sbjct: 112 ANDRP 116
>gi|11610605|gb|AAG38953.1|AF132026_1 testis-specific poly(A)-binding protein [Homo sapiens]
Length = 631
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 41/55 (74%), Gaps = 2/55 (3%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
AFS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 313 AFSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D S FG + ++ D+ N SKGYG V F T E A++A+ +MNG LL+GR +FV
Sbjct: 115 LYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFV 170
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|212276175|ref|NP_001130201.1| hypothetical protein [Zea mays]
gi|194688532|gb|ACF78350.1| unknown [Zea mays]
gi|414887483|tpg|DAA63497.1| TPA: hypothetical protein ZEAMMB73_917992 [Zea mays]
gi|414887484|tpg|DAA63498.1| TPA: hypothetical protein ZEAMMB73_917992 [Zea mays]
Length = 308
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 43/61 (70%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ DAFS+FG V +A II+D+ S+G+G +TF++ EEA A+T M+GK L GR + V++
Sbjct: 48 LKDAFSEFGNVLEARIIIDRESGRSRGFGFITFTSTEEASAAMTSMDGKELQGRNIRVNH 107
Query: 62 V 62
Sbjct: 108 A 108
>gi|326319545|ref|YP_004237217.1| RNP-1 like RNA-binding protein [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323376381|gb|ADX48650.1| RNP-1 like RNA-binding protein [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 172
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ AF QFG VT A ++M++ SKG+G V ++ EAQ A+ MNG+ L GR + V+
Sbjct: 19 LEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGMNGQALGGRSIVVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|121595278|ref|YP_987174.1| RNP-1 like RNA-binding protein [Acidovorax sp. JS42]
gi|222111562|ref|YP_002553826.1| rnp-1 like RNA-binding protein [Acidovorax ebreus TPSY]
gi|120607358|gb|ABM43098.1| RNP-1 like RNA-binding protein [Acidovorax sp. JS42]
gi|221731006|gb|ACM33826.1| RNP-1 like RNA-binding protein [Acidovorax ebreus TPSY]
Length = 102
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 39/59 (66%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
FSQFG VT A ++M++ SKG+G V ++ EAQ A+ +NG+ +DGR L V+ RP
Sbjct: 23 FSQFGSVTSAKVMMERDTGRSKGFGFVEMGSDSEAQDAINGLNGRSVDGRALTVNVARP 81
>gi|171056877|ref|YP_001789226.1| RNP-1 like RNA-binding protein [Leptothrix cholodnii SP-6]
gi|170774322|gb|ACB32461.1| RNP-1 like RNA-binding protein [Leptothrix cholodnii SP-6]
Length = 157
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFSQFG V A ++MD+ SKG+G V ++ EAQ A+ +NG+ + GR + V+
Sbjct: 19 LNEAFSQFGAVNSAKVMMDRETGRSKGFGFVEMGSDPEAQAAINGLNGQAIGGRAIVVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|328767903|gb|EGF77951.1| hypothetical protein BATDEDRAFT_27077 [Batrachochytrium
dendrobatidis JAM81]
Length = 106
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD- 60
+ADAFSQFG+V + ++ D+ S+G+G VTFS+ E A A+ MNG+ L+GR + V+
Sbjct: 27 LADAFSQFGEVVDSIVLKDRETGRSRGFGFVTFSSPESASAAVDAMNGQDLNGRNIRVNL 86
Query: 61 -NVRPS 65
N RP+
Sbjct: 87 ANERPA 92
>gi|193215305|ref|YP_001996504.1| RNP-1 like RNA-binding protein [Chloroherpeton thalassium ATCC
35110]
gi|193088782|gb|ACF14057.1| RNP-1 like RNA-binding protein [Chloroherpeton thalassium ATCC
35110]
Length = 104
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS++G+V A II+DK S+G+G V E +A++A+ +NG LDGR L V+
Sbjct: 17 LRDVFSEYGEVASANIIVDKYSGKSRGFGFVDMPNEADAEQAIEALNGSQLDGRSLKVNE 76
Query: 62 VRP 64
RP
Sbjct: 77 ARP 79
>gi|315057077|ref|XP_003177913.1| hypothetical protein MGYG_01973 [Arthroderma gypseum CBS 118893]
gi|311339759|gb|EFQ98961.1| hypothetical protein MGYG_01973 [Arthroderma gypseum CBS 118893]
Length = 152
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 39/59 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ + FSQFG + +A ++ D+ N S+G+G V FS+E EA AL MN + DGRV+ VD
Sbjct: 20 LREGFSQFGTIEEAIVVKDRDTNRSRGFGFVRFSSEAEADAALNAMNNQEFDGRVIRVD 78
>gi|302762278|ref|XP_002964561.1| hypothetical protein SELMODRAFT_81392 [Selaginella moellendorffii]
gi|302814304|ref|XP_002988836.1| hypothetical protein SELMODRAFT_128832 [Selaginella moellendorffii]
gi|300143407|gb|EFJ10098.1| hypothetical protein SELMODRAFT_128832 [Selaginella moellendorffii]
gi|300168290|gb|EFJ34894.1| hypothetical protein SELMODRAFT_81392 [Selaginella moellendorffii]
Length = 149
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 42/57 (73%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
DAFS FG++ + +I D+ S+G+G V++ T++EAQKA+ M+G++LDGR + V+
Sbjct: 55 DAFSPFGEIIEVRVIQDRETGRSRGFGFVSYITDQEAQKAMEAMDGRVLDGRTIRVN 111
>gi|224115158|ref|XP_002316957.1| predicted protein [Populus trichocarpa]
gi|222860022|gb|EEE97569.1| predicted protein [Populus trichocarpa]
Length = 153
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 43/63 (68%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS+FG+V +A ++ D+ SKG+G V ++T E+A + + M+G+ LDG V+F +
Sbjct: 71 LQEAFSKFGEVVQARVVTDRVSGYSKGFGFVKYATLEDAAEGIKGMDGQFLDGWVIFAEY 130
Query: 62 VRP 64
RP
Sbjct: 131 ARP 133
>gi|218200448|gb|EEC82875.1| hypothetical protein OsI_27755 [Oryza sativa Indica Group]
Length = 141
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 42/63 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AF++FG+V A ++ D+ SKG+G + ++T E+A K + M+GK LDG V+F +
Sbjct: 52 LKEAFAKFGEVIHARVVTDRVTGFSKGFGFIRYATVEDAAKGIEGMDGKFLDGWVIFAEY 111
Query: 62 VRP 64
RP
Sbjct: 112 ARP 114
>gi|120613408|ref|YP_973086.1| RNP-1-like RNA-binding protein [Acidovorax citrulli AAC00-1]
gi|120591872|gb|ABM35312.1| RNP-1-like RNA-binding protein [Acidovorax citrulli AAC00-1]
Length = 176
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ AF QFG VT A ++M++ SKG+G V ++ EAQ A+ MNG+ L GR + V+
Sbjct: 19 LEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGMNGQALGGRSIVVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|296811816|ref|XP_002846246.1| glycine-rich RNA-binding protein [Arthroderma otae CBS 113480]
gi|238843634|gb|EEQ33296.1| glycine-rich RNA-binding protein [Arthroderma otae CBS 113480]
Length = 133
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 38/59 (64%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ D FS+FG + +A ++ D+ N S+G+G V FS E EA AL MN + DGRV+ VD
Sbjct: 20 LRDGFSKFGTIEEAIVVKDRDTNRSRGFGFVRFSNESEADAALNAMNNQEFDGRVIRVD 78
>gi|421497038|ref|ZP_15944229.1| RNA-binding protein [Aeromonas media WS]
gi|407183931|gb|EKE57797.1| RNA-binding protein [Aeromonas media WS]
Length = 81
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + FSQFGQV K II+D+ SKG+G + +A+KA+ E++G + GR + V+
Sbjct: 6 LTNVFSQFGQVDKVDIIIDRDTGQSKGFGFIEMPVNGDAEKAIAELHGTEIGGRTITVNQ 65
Query: 62 VRPSRRYNTDVPLARLKIH 80
+P TD P R + H
Sbjct: 66 AKPK----TDAPRGRPQRH 80
>gi|403341233|gb|EJY69916.1| RNA binding domain-containing protein 28 [Oxytricha trifallax]
Length = 732
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ F +FG + + + N ++G+G + FST+EEAQKA+ MNG+ GRVL V+
Sbjct: 46 LKKEFQKFGTIVAVNVPIKNENNLNRGFGFIEFSTKEEAQKAIDGMNGQKYKGRVLAVEY 105
Query: 62 VRPSRRYNTDV 72
PSR+Y + V
Sbjct: 106 STPSRKYESKV 116
>gi|82802757|gb|ABB92429.1| PABP3 [Hylobates lar]
Length = 635
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 40/55 (72%), Gaps = 2/55 (3%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
AFS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ L+V
Sbjct: 313 AFSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATEPLYV 365
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKDLFGKFGPTLSVKVMTDQS-GKSKGFGFVSFEKHEDAQKAVDEMNGKELNGKQIYV 263
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D S FG V ++ D+ N SKGYG V F T E A++A+ +MNG L+ +FV
Sbjct: 115 LYDTVSAFGNVLSCKVVCDE--NGSKGYGFVHFGTREAAERAIEKMNGIPLNDCKVFV 170
>gi|337281471|ref|YP_004620943.1| glycine-rich RNA binding protein [Ramlibacter tataouinensis
TTB310]
gi|334732548|gb|AEG94924.1| Candidate glycine-rich RNA binding protein [Ramlibacter
tataouinensis TTB310]
Length = 128
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ AFSQFG V+ A ++M++ SKG+G V S+ EAQ A+ MNG+ + GR L V+
Sbjct: 19 MEQAFSQFGTVSSAKVMMERDTGRSKGFGFVEMSSPAEAQAAIEGMNGQQIGGRGLVVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|297830792|ref|XP_002883278.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297329118|gb|EFH59537.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 376
Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD--NV 62
AF FG++ + IIMDK SKGY + ++TEE A AL EMNGK+++G ++ VD
Sbjct: 303 AFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAASAALKEMNGKIINGWMIVVDVAKT 362
Query: 63 RPSRR 67
+P R+
Sbjct: 363 KPFRQ 367
>gi|225442420|ref|XP_002277538.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Vitis vinifera]
Length = 630
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS GQ+T A + M SKG+G V FST EEAQKALT +NG LL GR L++
Sbjct: 325 LQEHFSSCGQITSAKV-MRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYI 381
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+I D FS+FG+V +IM G S+G+G V F + +EA+KA+ +NG +L + LFV
Sbjct: 222 IIRDKFSEFGKVG-TVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFV 279
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG + + + GK SK +G V F +++ A AL +N +LDG+ LFV
Sbjct: 133 LQDIFCKFGNILSCKVAEENGK--SKCFGFVQFDSDDSATAALNALNDTMLDGKKLFV 188
>gi|115459296|ref|NP_001053248.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|32490269|emb|CAE05558.1| OSJNBb0116K07.11 [Oryza sativa Japonica Group]
gi|113564819|dbj|BAF15162.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|215695125|dbj|BAG90316.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 659
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS +G++T I+ D SKG G V FST EEA +ALTEMNGK++ G+ L+V
Sbjct: 337 LCELFSNYGKITSCKIMRD-ANGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLYV 393
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + + D+ SKG+G V + E AQ A+ +NG L++ + ++V
Sbjct: 143 LHDTFSAFGNILSCKVATDE-MGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYV 199
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDG---RVLF 58
+ + FSQ GQV + D S GY V F+ +A +AL +N L+G RV++
Sbjct: 55 LYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALELLNFAPLNGKPIRVMY 114
Query: 59 VDNVRPSRR 67
+ SRR
Sbjct: 115 SNRDPSSRR 123
Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 35/56 (62%), Gaps = 5/56 (8%)
Query: 6 FSQFGQVTKATII--MDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F +G +T A I+ MD GK S+ +G + F + ++A +A+ E+NGK ++ + +V
Sbjct: 238 FGAYGNITSAVIMVGMD-GK--SRCFGFINFKSPDDAARAVEELNGKKINDKEWYV 290
>gi|406911424|gb|EKD51218.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 125
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 9 FGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRY 68
FG+V A +I DK SKG+G V + +EEAQKA+ ++N K +DGR + V+ RP +
Sbjct: 26 FGEVVSAQVIQDKFNGRSKGFGFVEMANDEEAQKAIDDLNNKEIDGRKIIVNEARPMEKR 85
Query: 69 NTD 71
+ D
Sbjct: 86 DGD 88
>gi|333377706|ref|ZP_08469439.1| hypothetical protein HMPREF9456_01034 [Dysgonomonas mossii DSM
22836]
gi|332883726|gb|EGK04006.1| hypothetical protein HMPREF9456_01034 [Dysgonomonas mossii DSM
22836]
Length = 106
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D F+++G+++ A +IMDK SKGYG V QKA+ E+NG DGR + V
Sbjct: 17 LRDLFNEYGEISSAKVIMDKATGRSKGYGFVELEDNAAGQKAIEELNGAEYDGRTISVSE 76
Query: 62 VRP 64
RP
Sbjct: 77 ARP 79
>gi|218195166|gb|EEC77593.1| hypothetical protein OsI_16552 [Oryza sativa Indica Group]
Length = 659
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS +G++T I+ D SKG G V FST EEA +ALTEMNGK++ G+ L+V
Sbjct: 337 LCELFSNYGKITSCKIMRD-ANGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLYV 393
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + + D+ SKG+G V + E AQ A+ +NG L++ + ++V
Sbjct: 143 LHDTFSAFGNILSCKVATDE-MGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYV 199
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDG---RVLFVDNV 62
FSQ GQV + D S GY V F+ +A +AL +N L+G RV++ +
Sbjct: 59 FSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALELLNFAPLNGKPIRVMYSNRD 118
Query: 63 RPSRR 67
SRR
Sbjct: 119 PSSRR 123
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 35/56 (62%), Gaps = 5/56 (8%)
Query: 6 FSQFGQVTKATII--MDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F +G +T A I+ MD GK S+ +G + F + ++A +A+ E+NGK ++ + +V
Sbjct: 238 FGAYGNITSAVIMVGMD-GK--SRCFGFINFKSPDDAARAVEELNGKKINDKEWYV 290
>gi|407941455|ref|YP_006857096.1| RNP-1 like RNA-binding protein [Acidovorax sp. KKS102]
gi|407899249|gb|AFU48458.1| RNP-1 like RNA-binding protein [Acidovorax sp. KKS102]
Length = 188
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ AF QFG VT A ++M++ SKG+G V ++ EAQ A+ MNG+ L GR + V+
Sbjct: 19 LEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGMNGQPLGGRSIVVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|225461185|ref|XP_002283144.1| PREDICTED: glycine-rich RNA-binding protein 2 [Vitis vinifera]
gi|147854770|emb|CAN78606.1| hypothetical protein VITISV_024164 [Vitis vinifera]
gi|302143178|emb|CBI20473.3| unnamed protein product [Vitis vinifera]
Length = 135
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 41/63 (65%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS+FGQV A ++ D+ SKG+G V + + E+A + + M+GK LDG V+F +
Sbjct: 57 LHEAFSKFGQVVNARVVTDRVSGYSKGFGFVRYVSLEDAAEGIKGMDGKFLDGWVIFAEY 116
Query: 62 VRP 64
RP
Sbjct: 117 ARP 119
>gi|21553972|gb|AAM63053.1| glycine-rich RNA binding protein, putative [Arabidopsis thaliana]
Length = 136
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 42/59 (71%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ AF+ FG+VT+AT+I D+ S+G+G V+FS E+ A A+ EM+GK L+GR + V+
Sbjct: 51 LKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVN 109
>gi|119612220|gb|EAW91814.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_a [Homo
sapiens]
Length = 287
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 64 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 115
>gi|241766569|ref|ZP_04764426.1| RNP-1 like RNA-binding protein [Acidovorax delafieldii 2AN]
gi|241363173|gb|EER58764.1| RNP-1 like RNA-binding protein [Acidovorax delafieldii 2AN]
Length = 116
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ AF QFG VT A ++M++ SKG+G V ++ EAQ A+ MNG+ L GR + V+
Sbjct: 19 LEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGMNGQPLGGRSIVVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|2665654|gb|AAB88449.1| polyadenylate binding protein [Petromyzon marinus]
Length = 630
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M++G+ S+G+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 315 FSPFGTITSAKVMMEEGR--SRGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYV 366
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 2 IADAFSQF-GQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F Q+ G+ ++MD+G SKG+G V+F E+AQKA+ EMN K L+GR ++V
Sbjct: 207 LREYFEQYVGKTLSVKVMMDEG-GKSKGFGFVSFERHEDAQKAVDEMNTKELNGRAIYV 264
>gi|337281472|ref|YP_004620944.1| glycine-rich RNA binding protein [Ramlibacter tataouinensis
TTB310]
gi|334732549|gb|AEG94925.1| Candidate glycine-rich RNA binding protein [Ramlibacter
tataouinensis TTB310]
Length = 159
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ AFSQFG V+ A ++M++ SKG+G V ++ EAQ A+ MNG+ L GR + V+
Sbjct: 19 LEQAFSQFGAVSSAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGMNGQPLGGRSVVVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|119357086|ref|YP_911730.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides DSM
266]
gi|119354435|gb|ABL65306.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides DSM
266]
Length = 90
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 39/61 (63%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
DAFSQFGQV A II DK SKG+G + S + EA++A+ MN + L GR + V+ +
Sbjct: 19 DAFSQFGQVDSANIINDKFSGRSKGFGFIEMSNDSEAREAIESMNDQDLKGRTIKVNEAK 78
Query: 64 P 64
P
Sbjct: 79 P 79
>gi|326505708|dbj|BAJ95525.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 226
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 44/63 (69%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ DAFS++G+VT+A ++MDK S+G+ VTF ++ ++A+ +MNG L+GR + VD
Sbjct: 23 LKDAFSKYGKVTEAKVVMDKFSGRSRGFAFVTFDEKKAMEEAIEDMNGLDLEGRAITVDK 82
Query: 62 VRP 64
+P
Sbjct: 83 AQP 85
>gi|297743165|emb|CBI36032.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS GQ+T A + M SKG+G V FST EEAQKALT +NG LL GR L++
Sbjct: 325 LQEHFSSCGQITSAKV-MRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYI 381
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+I D FS+FG+V +IM G S+G+G V F + +EA+KA+ +NG +L + LFV
Sbjct: 222 IIRDKFSEFGKVG-TVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFV 279
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG + + + GK SK +G V F +++ A AL +N +LDG+ LFV
Sbjct: 133 LQDIFCKFGNILSCKVAEENGK--SKCFGFVQFDSDDSATAALNALNDTMLDGKKLFV 188
>gi|147769692|emb|CAN65531.1| hypothetical protein VITISV_039630 [Vitis vinifera]
Length = 555
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS GQ+T A + M SKG+G V FST EEAQKALT +NG LL GR L++
Sbjct: 325 LQEHFSSCGQITSAKV-MRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYI 381
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+I D FS+FG+V +IM G S+G+G V F + +EA+KA+ +NG +L + LFV
Sbjct: 222 IIRDKFSEFGKVG-TVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFV 279
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG + + + GK SK +G V F +++ A AL +N +LDG+ LFV
Sbjct: 133 LQDIFCKFGNILSCKVAEENGK--SKCFGFVQFDSDDSATAALNALNDTMLDGKKLFV 188
>gi|168704267|ref|ZP_02736544.1| RNA-binding region RNP-1 [Gemmata obscuriglobus UQM 2246]
Length = 137
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 43/64 (67%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
M+ + F+ +G V A +IMD+ SKG+G V +++EAQ A++ M+G++++GR L V+
Sbjct: 18 MLQEMFTPYGAVVSAQVIMDRDTGRSKGFGFVEMGSDQEAQAAISGMHGQVIEGRPLTVN 77
Query: 61 NVRP 64
RP
Sbjct: 78 EARP 81
>gi|224124176|ref|XP_002319264.1| predicted protein [Populus trichocarpa]
gi|118487492|gb|ABK95573.1| unknown [Populus trichocarpa]
gi|222857640|gb|EEE95187.1| predicted protein [Populus trichocarpa]
Length = 149
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 43/65 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS+FG+V +A ++ D+ SKG+G V + T E+A + + M+G+ LDG V+F +
Sbjct: 70 LQEAFSKFGEVVQAKVVTDRTSGYSKGFGFVRYGTLEDAAEGIKGMDGQFLDGWVIFAEY 129
Query: 62 VRPSR 66
RP +
Sbjct: 130 ARPKQ 134
>gi|296203566|ref|XP_002748951.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Callithrix
jacchus]
Length = 604
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNGK++ + L+V
Sbjct: 282 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGKIVATKPLYV 333
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ + SKG+G V+F E+AQKA+ E+NGK L G+ ++V
Sbjct: 175 LKDLFGKFGPTLSVKVMTDE-RGKSKGFGFVSFERGEDAQKAVDELNGKELSGKQIYV 231
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 33/46 (71%), Gaps = 2/46 (4%)
Query: 14 KATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
K+ ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ + +FV
Sbjct: 95 KSGVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDQKVFV 138
>gi|15229525|ref|NP_189025.1| glycine-rich RNA-binding protein 4 [Arabidopsis thaliana]
gi|30687226|ref|NP_850629.1| glycine-rich RNA-binding protein 4 [Arabidopsis thaliana]
gi|9294652|dbj|BAB03001.1| glycine-rich RNA binding protein-like [Arabidopsis thaliana]
gi|17979516|gb|AAL50093.1| AT3g23830/F14O13_2 [Arabidopsis thaliana]
gi|20453303|gb|AAM19890.1| AT3g23830/F14O13_2 [Arabidopsis thaliana]
gi|332643298|gb|AEE76819.1| glycine-rich RNA-binding protein 4 [Arabidopsis thaliana]
gi|332643299|gb|AEE76820.1| glycine-rich RNA-binding protein 4 [Arabidopsis thaliana]
Length = 136
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 42/59 (71%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ AF+ FG+VT+AT+I D+ S+G+G V+FS E+ A A+ EM+GK L+GR + V+
Sbjct: 51 LKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVN 109
>gi|406965367|gb|EKD91001.1| Glycine-rich RNA-binding protein [uncultured bacterium]
Length = 87
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 43/63 (68%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS++G++ +AT++ D+ S+G+G V F+ + + KA+ EMNG +DGR + V+
Sbjct: 22 LREAFSKYGEIIQATVLKDRQTGRSRGFGFVEFANDADGDKAIQEMNGADMDGRNIVVNE 81
Query: 62 VRP 64
RP
Sbjct: 82 ARP 84
>gi|238011394|gb|ACR36732.1| unknown [Zea mays]
Length = 149
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 43/63 (68%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS +G+V ++ II+D+ S+G+G VTFSTEE + A+ MNGK LDGR + V+
Sbjct: 24 LHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRNAIEGMNGKELDGRNITVNE 83
Query: 62 VRP 64
+
Sbjct: 84 AQS 86
>gi|219888685|gb|ACL54717.1| unknown [Zea mays]
gi|414869098|tpg|DAA47655.1| TPA: glycine-rich protein1 [Zea mays]
Length = 144
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 43/63 (68%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS +G+V ++ II+D+ S+G+G VTFSTEE + A+ MNGK LDGR + V+
Sbjct: 24 LHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRNAIEGMNGKELDGRNITVNE 83
Query: 62 VRP 64
+
Sbjct: 84 AQS 86
>gi|195612516|gb|ACG28088.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|414869096|tpg|DAA47653.1| TPA: glycine-rich protein1 isoform 1 [Zea mays]
gi|414869097|tpg|DAA47654.1| TPA: glycine-rich protein1 isoform 2 [Zea mays]
Length = 155
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 43/63 (68%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS +G+V ++ II+D+ S+G+G VTFSTEE + A+ MNGK LDGR + V+
Sbjct: 24 LHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRNAIEGMNGKELDGRNITVNE 83
Query: 62 VRP 64
+
Sbjct: 84 AQS 86
>gi|195609654|gb|ACG26657.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195612080|gb|ACG27870.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195612572|gb|ACG28116.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 156
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 43/63 (68%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS +G+V ++ II+D+ S+G+G VTFSTEE + A+ MNGK LDGR + V+
Sbjct: 24 LHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRNAIEGMNGKELDGRNITVNE 83
Query: 62 VRP 64
+
Sbjct: 84 AQS 86
>gi|149608633|ref|XP_001515603.1| PREDICTED: polyadenylate-binding protein 4 [Ornithorhynchus
anatinus]
Length = 630
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A +++++G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEEGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
D FS FG + ++ D+ N SKGY V F T++ A +A+ +MNG LL+ R +FV
Sbjct: 117 DTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV 170
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS++G+ ++ D SKG+G V+F E+A +A+ +MNGK ++G+++FV
Sbjct: 207 LKELFSKYGKTLSVKVMTDPS-GKSKGFGFVSFEKHEDANQAVEDMNGKDINGKMVFV 263
>gi|223942615|gb|ACN25391.1| unknown [Zea mays]
Length = 120
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 43/63 (68%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS +G+V ++ II+D+ S+G+G VTFSTEE + A+ MNGK LDGR + V+
Sbjct: 24 LHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRNAIEGMNGKELDGRNITVNE 83
Query: 62 VRP 64
+
Sbjct: 84 AQS 86
>gi|226532482|ref|NP_001150574.1| glycine-rich RNA-binding protein 7 [Zea mays]
gi|195640298|gb|ACG39617.1| glycine-rich RNA-binding protein 7 [Zea mays]
Length = 253
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 43/59 (72%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV 62
D F+++GQV +A II+D+ S+G+G +T+++ EEA A+T M+GK LDGR + V++
Sbjct: 52 DEFAKYGQVIEAKIILDRESGRSRGFGFITYTSSEEASAAITAMDGKTLDGRNIRVNHA 110
>gi|239818248|ref|YP_002947158.1| RNP-1 like RNA-binding protein [Variovorax paradoxus S110]
gi|239804825|gb|ACS21892.1| RNP-1 like RNA-binding protein [Variovorax paradoxus S110]
Length = 181
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ AF QFG VT A ++M++ SKG+G V ++ EAQ A+ MNG+ L GR + V+
Sbjct: 19 LEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGMNGQPLGGRSVVVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|226499338|ref|NP_001149519.1| glycine-rich RNA-binding protein 8 [Zea mays]
gi|195627730|gb|ACG35695.1| glycine-rich RNA-binding protein 8 [Zea mays]
Length = 198
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 42/63 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ DAFS+FG +T+A +++DK S+G+G VTF ++ + A+ MNG LDGR + VD
Sbjct: 23 LKDAFSKFGNLTEAKVVLDKFSGRSRGFGFVTFDEKQAMEDAIEGMNGLDLDGRNITVDK 82
Query: 62 VRP 64
+P
Sbjct: 83 AQP 85
>gi|222629159|gb|EEE61291.1| hypothetical protein OsJ_15377 [Oryza sativa Japonica Group]
Length = 613
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS +G++T I+ D SKG G V FST EEA +ALTEMNGK++ G+ L+V
Sbjct: 336 LCELFSNYGKITSCKIMRD-ANGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLYV 392
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + + D+ SKG+G V + E AQ A+ +NG L++ + ++V
Sbjct: 142 LHDTFSAFGNILSCKVATDE-MGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYV 198
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 7/73 (9%)
Query: 6 FSQFGQVTKATII--MDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
F +G +T A I+ MD GK S+ +G + F + ++A +A+ E+NGK ++ + +V R
Sbjct: 237 FGAYGNITSAVIMVGMD-GK--SRCFGFINFKSPDDAARAVEELNGKKINDKEWYVG--R 291
Query: 64 PSRRYNTDVPLAR 76
++ ++ L R
Sbjct: 292 AQKKSEREIELKR 304
>gi|363543257|ref|NP_001241843.1| uncharacterized protein LOC100857047 [Zea mays]
gi|238007748|gb|ACR34909.1| unknown [Zea mays]
gi|413916459|gb|AFW56391.1| putative glycine-rich protein [Zea mays]
Length = 261
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 43/59 (72%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV 62
D F+++GQV +A II+D+ S+G+G +T+++ EEA A+T M+GK LDGR + V++
Sbjct: 49 DEFAKYGQVIEAKIILDRESGRSRGFGFITYTSSEEASAAITAMDGKTLDGRNIRVNHA 107
>gi|226496737|ref|NP_001151785.1| LOC100285420 [Zea mays]
gi|195649671|gb|ACG44303.1| polyadenylate-binding protein 2 [Zea mays]
gi|414586484|tpg|DAA37055.1| TPA: polyadenylate-binding protein 2 [Zea mays]
Length = 660
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS FG++T ++ D+ SKG G V FST EEA +ALTEMNGK++ G+ L+V
Sbjct: 338 LRELFSNFGKITSCKVMRDQ-NGLSKGSGFVAFSTREEASQALTEMNGKMISGKPLYV 394
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS FG + + MD+G SKG+G V + EE AQ A+ +NG L++ + +FV
Sbjct: 144 LHETFSSFGTILSCKVAMDEG-GQSKGFGFVQYEKEEAAQNAIKSLNGMLINDKPVFV 200
Score = 34.3 bits (77), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 5/56 (8%)
Query: 6 FSQFGQVTKATII--MDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F ++G +T A ++ MD GK S+ +G + F + A +A+ E+NGK ++ + +V
Sbjct: 239 FGEYGNITSAVVMIGMD-GK--SRCFGFINFENPDAASRAVQELNGKKINDKEWYV 291
>gi|91202563|emb|CAJ72202.1| rna binding protein [Candidatus Kuenenia stuttgartiensis]
Length = 126
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 38/63 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ F +FGQVT TII DK S+G+G V + EAQ AL +NGK L+GRVL V+
Sbjct: 17 LKQVFEEFGQVTSVTIIKDKFSGESRGFGFVEMPSRAEAQAALDSLNGKDLNGRVLNVNE 76
Query: 62 VRP 64
P
Sbjct: 77 ALP 79
>gi|327285428|ref|XP_003227435.1| PREDICTED: polyadenylate-binding protein 4-like [Anolis
carolinensis]
Length = 616
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A +++++G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 301 FSPFGSITSAKVMLEEGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 352
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T++ A +A+ +MNG LL+ R +FV
Sbjct: 102 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV 157
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F ++G+ ++ D GK SKG+G V+F EEA KA+ EMNGK ++G+++FV
Sbjct: 194 LKELFGKYGKTLSVKVMTDPTGK--SKGFGFVSFEKHEEANKAVEEMNGKDINGKMVFV 250
>gi|167383625|ref|XP_001736605.1| cold-inducible RNA-binding protein [Entamoeba dispar SAW760]
gi|165900936|gb|EDR27150.1| cold-inducible RNA-binding protein, putative [Entamoeba dispar
SAW760]
Length = 138
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AF +FG VT ++ D+ SKG+G VTF +E+A+KA+ EMN + L+GR + VD +P
Sbjct: 21 AFEKFGTVTDCKVVTDRESQRSKGFGFVTFEKDEDAKKAIEEMNEQELEGRRIKVDVSKP 80
>gi|115473215|ref|NP_001060206.1| Os07g0602600 [Oryza sativa Japonica Group]
gi|113611742|dbj|BAF22120.1| Os07g0602600 [Oryza sativa Japonica Group]
gi|222637411|gb|EEE67543.1| hypothetical protein OsJ_25023 [Oryza sativa Japonica Group]
Length = 238
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 40/58 (68%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS +G V +A II+D+ SKGYG +T+++ EEA A+T M+GK L GR++ V
Sbjct: 47 LKDVFSHYGDVLEARIIIDRDTGKSKGYGFITYTSSEEAAAAVTAMDGKDLQGRIVRV 104
>gi|398810631|ref|ZP_10569445.1| RRM domain-containing RNA-binding protein [Variovorax sp. CF313]
gi|398082488|gb|EJL73237.1| RRM domain-containing RNA-binding protein [Variovorax sp. CF313]
Length = 179
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ AF QFG VT A ++M++ SKG+G V ++ EAQ A+ MNG+ L GR + V+
Sbjct: 19 LEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGMNGQPLGGRSVVVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|357144628|ref|XP_003573359.1| PREDICTED: nucleolin-like [Brachypodium distachyon]
Length = 153
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 41/61 (67%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
+AF++FG+V A ++ D+ SKG+G V +++ E+A K + M+GK LDG V+F + R
Sbjct: 66 EAFAKFGEVMHARVVTDRVTGFSKGFGFVRYASVEDASKGIEGMDGKFLDGWVIFAEYAR 125
Query: 64 P 64
P
Sbjct: 126 P 126
>gi|319796634|ref|YP_004158274.1| rnp-1 like RNA-binding protein [Variovorax paradoxus EPS]
gi|315599097|gb|ADU40163.1| RNP-1 like RNA-binding protein [Variovorax paradoxus EPS]
Length = 189
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ AF QFG VT A ++M++ SKG+G V ++ EAQ A+ MNG+ L GR + V+
Sbjct: 19 LEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGMNGQPLGGRSVVVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|357112848|ref|XP_003558218.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Brachypodium distachyon]
Length = 168
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AF FGQV +A +I D+ SKG+G V + + +EA+ A MN K LDG V+FVD
Sbjct: 78 LKNAFIPFGQVLEAKVITDRISGRSKGFGFVRYVSLQEAEAARQGMNAKFLDGWVIFVDP 137
Query: 62 VRPSRRYNTDVP 73
+P + P
Sbjct: 138 AKPREQKPAPQP 149
>gi|432095458|gb|ELK26654.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 657
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T+A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 310 FSPFGSITRAEVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 361
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 111 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 166
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D GK SKG+G V++ E+A KA+ EMNGK + G+V+FV
Sbjct: 203 LKELFSQFGKTLSVKVMRDPTGK--SKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 259
>gi|357164563|ref|XP_003580095.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 661
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS FG++T ++ D+ SKG G V FST EEA +A+TEMNGK+L G+ L+V
Sbjct: 335 LRELFSTFGKITSCKVMRDQ-NGVSKGSGFVAFSTREEASQAITEMNGKMLSGKPLYV 391
Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + + D SKG+G V + EE AQ A+ +NG L++ + ++V
Sbjct: 141 LHDTFSAFGAILSCKVATDD-MGQSKGFGFVQYEKEEFAQSAMKSLNGMLINDKPVYV 197
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS++G +T A ++M S+ +G + F + ++A +A+ E+NGK ++ + +
Sbjct: 236 FSEYGNITSA-VVMVGTDGKSRCFGFINFESPDDAVRAVEELNGKKINDKEWYC 288
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDG---RVLF 58
+ + FSQ GQV + D S GY V FS +A +AL +N L+ RV++
Sbjct: 53 LYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNFSNPMDAARALEMLNFVPLNNKPIRVMY 112
Query: 59 VDNVRPSRR 67
+ SRR
Sbjct: 113 SNRDPSSRR 121
>gi|196232841|ref|ZP_03131691.1| RNP-1 like RNA-binding protein [Chthoniobacter flavus Ellin428]
gi|196223040|gb|EDY17560.1| RNP-1 like RNA-binding protein [Chthoniobacter flavus Ellin428]
Length = 107
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D F++ G V++AT++ DK S+G+G VT S+ EEAQKA+ +GK + GR L V+
Sbjct: 19 LQDTFAEAGTVSEATLMQDKFTGKSRGFGFVTMSSSEEAQKAIDLFHGKTVQGRALTVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|449494871|ref|XP_004159670.1| PREDICTED: cold-inducible RNA-binding protein B-like [Cucumis
sativus]
Length = 95
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 41/59 (69%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ + FS FG +++A +I D KG+G VTF + EA+KAL M+G+++DGR++FV+
Sbjct: 23 LKNLFSPFGSISEARLIRDPKTERPKGFGFVTFQSPAEAKKALKAMDGRIVDGRLIFVE 81
>gi|323448247|gb|EGB04148.1| hypothetical protein AURANDRAFT_70409 [Aureococcus anophagefferens]
Length = 616
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 40/56 (71%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ F+++G +T A ++ + TS+G+G V FS+ EEA KA+TEMN KL+ G+ +FV
Sbjct: 310 EHFTEYGTITSARVMREPATGTSRGFGFVCFSSPEEAAKAVTEMNNKLVLGKPIFV 365
>gi|238014210|gb|ACR38140.1| unknown [Zea mays]
gi|414873814|tpg|DAA52371.1| TPA: glycine-rich RNA-binding protein 8 isoform 1 [Zea mays]
gi|414873815|tpg|DAA52372.1| TPA: glycine-rich RNA-binding protein 8 isoform 2 [Zea mays]
gi|414873816|tpg|DAA52373.1| TPA: glycine-rich RNA-binding protein 8 isoform 3 [Zea mays]
Length = 205
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 42/63 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ DAFS+FG +T+A +++DK S+G+G VTF ++ + A+ MNG LDGR + VD
Sbjct: 23 LKDAFSKFGNLTEAKVVLDKFSGRSRGFGFVTFDEKQAMEDAIEGMNGLDLDGRNITVDK 82
Query: 62 VRP 64
+P
Sbjct: 83 AQP 85
>gi|148229527|ref|NP_001085857.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
laevis]
gi|49118872|gb|AAH73435.1| MGC80927 protein [Xenopus laevis]
Length = 626
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A +++++G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEEGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + ++ D+ N SKGY V F T++ A +A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGR 172
Query: 62 VRPSRRYNTDV 72
+ R ++
Sbjct: 173 FKCRREREAEL 183
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS++G+ ++ D SKG+G V+F E+A KA+ +MNGK ++G+++FV
Sbjct: 207 LKETFSKYGKTLSVKVMTDPS-GKSKGFGFVSFERHEDANKAVDDMNGKDVNGKIMFV 263
>gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes]
Length = 623
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A +++++G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEEGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T++ A +A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV 170
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F ++G+ ++MD GK S+G+G V++ E+A KA+ +MNG L+G+ +FV
Sbjct: 207 LKELFDKYGKTLSVKVMMDPTGK--SRGFGFVSYEKHEDANKAVEDMNGTELNGKTVFV 263
>gi|303315989|ref|XP_003067999.1| Glycine-rich RNA-binding protein 2, mitochondrial precursor ,
putative [Coccidioides posadasii C735 delta SOWgp]
gi|240107675|gb|EER25854.1| Glycine-rich RNA-binding protein 2, mitochondrial precursor ,
putative [Coccidioides posadasii C735 delta SOWgp]
Length = 117
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV-- 62
FS+FG + +A ++ D+ N S+G+G V F++E EA+ A+ EMN + DGR + VD
Sbjct: 21 GFSKFGSIEEAIVVKDRDTNRSRGFGFVRFASEGEAEAAMNEMNNQEFDGRTIRVDKAAD 80
Query: 63 RPS 65
RPS
Sbjct: 81 RPS 83
>gi|410898224|ref|XP_003962598.1| PREDICTED: polyadenylate-binding protein 4-like [Takifugu rubripes]
Length = 653
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A +++++G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEEGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T++ A +A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV 170
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F ++G+ ++MD GK S+G+G V++ E+A KA+ +MNG L+G+ +FV
Sbjct: 207 LKELFDKYGKTLSVKVMMDPTGK--SRGFGFVSYEKHEDANKAVEDMNGTELNGKTVFV 263
>gi|351731832|ref|ZP_08949523.1| RNP-1 like RNA-binding protein [Acidovorax radicis N35]
Length = 177
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ AF QFG VT A ++M++ SKG+G V + EAQ A+ MNG+ L GR + V+
Sbjct: 19 LEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGNDAEAQAAINGMNGQPLGGRSIVVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|119177425|ref|XP_001240490.1| hypothetical protein CIMG_07653 [Coccidioides immitis RS]
gi|320032129|gb|EFW14085.1| conserved hypothetical protein [Coccidioides posadasii str.
Silveira]
gi|392867546|gb|EAS29215.2| hypothetical protein CIMG_07653 [Coccidioides immitis RS]
Length = 147
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV-- 62
FS+FG + +A ++ D+ N S+G+G V F++E EA+ A+ EMN + DGR + VD
Sbjct: 21 GFSKFGSIEEAIVVKDRDTNRSRGFGFVRFASEGEAEAAMNEMNNQEFDGRTIRVDKAAD 80
Query: 63 RPS 65
RPS
Sbjct: 81 RPS 83
>gi|78189511|ref|YP_379849.1| RNA recognition motif-containing protein [Chlorobium
chlorochromatii CaD3]
gi|78171710|gb|ABB28806.1| RNA-binding region RNP-1 (RNA recognition motif) [Chlorobium
chlorochromatii CaD3]
Length = 90
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ DAF QFGQV A+II DK SKG+G V + EA++A+ MN K L+GR + V+
Sbjct: 17 LRDAFGQFGQVESASIITDKFSGRSKGFGFVDMPNDSEAREAIGAMNEKELNGRPIKVNE 76
Query: 62 VRP 64
+P
Sbjct: 77 AKP 79
>gi|388494768|gb|AFK35450.1| unknown [Medicago truncatula]
Length = 176
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ +AFS++G V A IIMD+ S+G+G +TF+T EEA AL M+ K LDGR + V+
Sbjct: 56 LREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQAMDNKELDGRTVRVN 114
>gi|297812083|ref|XP_002873925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297319762|gb|EFH50184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 167
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ FS+FGQVT II+++ S GYG V F+ +E+AQ A+ MNGK DGR + V
Sbjct: 91 LKKVFSEFGQVTNVKIIINERTRQSLGYGYVWFNRKEDAQLAVEAMNGKFFDGRFILVKF 150
Query: 62 VRP--SRR 67
+P SRR
Sbjct: 151 GQPGLSRR 158
>gi|116780918|gb|ABK21879.1| unknown [Picea sitchensis]
Length = 172
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ DAFS FG++ ++ II D+ S+G+G VTFS E+ + A+ MNGK+LDGR + V+
Sbjct: 25 LQDAFSPFGEILESKIISDRETGRSRGFGFVTFSDEQSMRDAIDAMNGKVLDGRNITVN 83
>gi|348517413|ref|XP_003446228.1| PREDICTED: polyadenylate-binding protein 4 [Oreochromis niloticus]
Length = 627
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A +++++G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEEGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T++ A +A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV 170
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F ++G+ ++ D S+G+G V++ E+A KA+ EMNG L+G+ +FV
Sbjct: 207 LKEIFDKYGKTLSVKVMTDPS-GKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFV 263
>gi|226506948|ref|NP_001149776.1| glycine-rich RNA-binding protein 7 [Zea mays]
gi|195633803|gb|ACG36746.1| glycine-rich RNA-binding protein 7 [Zea mays]
Length = 276
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 43/59 (72%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV 62
D F+++GQV +A II+D+ S+G+G VT+++ EEA A+T ++GK LDGR + V++
Sbjct: 48 DEFAKYGQVIEARIIIDRESGRSRGFGFVTYTSSEEASAAITALDGKTLDGRSIRVNHA 106
>gi|41152034|ref|NP_958453.1| polyadenylate-binding protein 4 [Danio rerio]
gi|31419252|gb|AAH53126.1| Poly(A) binding protein, cytoplasmic 4 (inducible form) [Danio
rerio]
Length = 637
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A +++++G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 315 FSPFGSITSAKVMLEEGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 366
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T++ A +A+ +MNG LL+ R +FV
Sbjct: 116 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV 171
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F ++G+ ++ D GK S+G+G V++ E+A KA+ EMNG L+G+ +FV
Sbjct: 208 LKELFDKYGKTLSVKVMTDPTGK--SRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFV 264
>gi|223938031|ref|ZP_03629929.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
gi|223893245|gb|EEF59708.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
Length = 114
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D F+Q G VT+ +IMDK ++G+G VT ST+E A A+ +NGK GR L V+
Sbjct: 18 VQDLFAQHGPVTEVNLIMDKMTGRARGFGFVTMSTKEGADAAVQNLNGKQWQGRALTVNE 77
Query: 62 VRP 64
RP
Sbjct: 78 ARP 80
>gi|47219550|emb|CAG09904.1| unnamed protein product [Tetraodon nigroviridis]
Length = 623
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A +++++G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEEGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T++ A +A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV 170
Score = 41.2 bits (95), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F ++G+ ++ D GK S+G+G +++ E+A KA+ +MNG L+G+ +FV
Sbjct: 207 LKELFDKYGKTLSVKVMTDPTGK--SRGFGFISYEKHEDANKAVEDMNGTELNGKTVFV 263
>gi|242083506|ref|XP_002442178.1| hypothetical protein SORBIDRAFT_08g015580 [Sorghum bicolor]
gi|241942871|gb|EES16016.1| hypothetical protein SORBIDRAFT_08g015580 [Sorghum bicolor]
Length = 250
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 43/59 (72%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV 62
D F+++G+V +A II+D+ S+G+G VT+++ EEA A+T M+GK LDGR + V++
Sbjct: 48 DEFAKYGEVIEARIILDRESGRSRGFGFVTYTSSEEASAAITAMDGKTLDGRSIRVNHA 106
>gi|301624826|ref|XP_002941699.1| PREDICTED: polyadenylate-binding protein 4-like [Xenopus (Silurana)
tropicalis]
Length = 632
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 41/54 (75%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A +++++G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 320 FSPFGSITSAKVMLEEGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 371
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + ++ D+ N SKGY V F T++ A +A+ +MNG LL+ R +FV
Sbjct: 121 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGR 178
Query: 62 VRPSRRYNTDV 72
+ R ++
Sbjct: 179 FKCRREREAEL 189
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS++G+ ++ D SKG+G V+F E+A KA+ +MNGK ++G+++FV
Sbjct: 213 LKETFSKYGKTLSVKVMTDPS-GKSKGFGFVSFERHEDANKAVDDMNGKDVNGKIMFV 269
>gi|296226907|ref|XP_002759113.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Callithrix jacchus]
Length = 604
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 282 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 333
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ MNGK L+G+ ++V
Sbjct: 175 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDVMNGKELNGKQIYV 231
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 14 KATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
K+ ++ D+ N KGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 95 KSGVVCDE--NGPKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 138
>gi|387861095|gb|AFK08577.1| glycine-rich RNA binding protein 2b [Camelina sativa]
gi|387861101|gb|AFK08580.1| glycine-rich RNA binding protein 2b [Camelina sativa]
Length = 156
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD--N 61
DAF+ FG+V A +I+D+ S+G+G V FS E A A++EM+GK L+GR + V+ N
Sbjct: 54 DAFAHFGEVVDAKVIVDRETGRSRGFGFVNFSDETAASAAISEMDGKDLNGRNIRVNPAN 113
Query: 62 VRPS 65
RPS
Sbjct: 114 DRPS 117
>gi|397502367|ref|XP_003821832.1| PREDICTED: polyadenylate-binding protein 1 [Pan paniscus]
Length = 656
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 334 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 385
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 135 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 190
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 227 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 283
>gi|194386544|dbj|BAG61082.1| unnamed protein product [Homo sapiens]
Length = 604
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 282 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 333
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 175 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 231
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 33/46 (71%), Gaps = 2/46 (4%)
Query: 14 KATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
K+ ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 95 KSGVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 138
>gi|255580168|ref|XP_002530915.1| RNA binding protein, putative [Ricinus communis]
gi|223529509|gb|EEF31464.1| RNA binding protein, putative [Ricinus communis]
Length = 354
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 41/60 (68%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AFS+FG+V +A ++ D+ SKG+G V + + E+A+K + M+GK LDG V+F + RP
Sbjct: 71 AFSKFGEVVQARVVTDRVSGYSKGFGFVRYGSLEDAEKGIEGMDGKFLDGWVIFAEYARP 130
>gi|449435011|ref|XP_004135289.1| PREDICTED: cold-inducible RNA-binding protein B-like isoform 1
[Cucumis sativus]
gi|449435013|ref|XP_004135290.1| PREDICTED: cold-inducible RNA-binding protein B-like isoform 2
[Cucumis sativus]
Length = 89
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 41/59 (69%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ + FS FG +++A +I D KG+G VTF + EA+KAL M+G+++DGR++FV+
Sbjct: 23 LKNLFSPFGSISEARLIRDPKTERPKGFGFVTFQSPAEAKKALKAMDGRIVDGRLIFVE 81
>gi|35570|emb|CAA68428.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 311 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 362
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 9 FGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 211 FGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 260
>gi|388512901|gb|AFK44512.1| unknown [Medicago truncatula]
Length = 144
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 41/63 (65%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AF +FG+V A ++ D+ SKG+G V ++T E+A K + M+GK L+G V+F +
Sbjct: 67 LREAFQKFGEVVHARVVTDRVSGYSKGFGFVKYATLEDAAKGIEGMDGKFLEGWVIFAEY 126
Query: 62 VRP 64
RP
Sbjct: 127 ARP 129
>gi|390476078|ref|XP_002759394.2| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 633
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 311 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 362
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 9 FGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 211 FGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 260
>gi|301756358|ref|XP_002914026.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 636
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|159164023|pdb|2D9P|A Chain A, Solution Structure Of Rna Binding Domain 4 In
Polyadenylation Binding Protein 3
Length = 103
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 41/55 (74%), Gaps = 2/55 (3%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
AFS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 35 AFSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87
>gi|119612225|gb|EAW91819.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_e [Homo
sapiens]
Length = 633
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 311 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 362
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 9 FGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 211 FGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 260
>gi|72534835|ref|NP_001026846.1| poly A binding protein, cytoplasmic 1 a [Danio rerio]
gi|71534060|gb|AAH99992.1| Poly A binding protein, cytoplasmic 1 a [Danio rerio]
Length = 634
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV 170
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 2 IADAFSQFGQVTKATIIMD-KGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F ++G ++ D GK SKG+G V+F E+AQ+A+ EMNGK ++G+ ++V
Sbjct: 207 LKEIFCKYGPALSIRVMTDDSGK--SKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYV 263
>gi|52346016|ref|NP_001005051.1| poly(A) binding protein, cytoplasmic 1 [Xenopus (Silurana)
tropicalis]
gi|49903495|gb|AAH76931.1| polyadenylate-binding protein 1 [Xenopus (Silurana) tropicalis]
Length = 634
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV 170
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 2 IADAFSQFGQVTKATIIMD-KGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F ++G ++ D GK SKG+G V+F E+AQKA+ +MNGK ++G+ ++V
Sbjct: 207 LKEMFGKYGPALSVKVMTDDNGK--SKGFGFVSFERHEDAQKAVDDMNGKDMNGKAIYV 263
>gi|41386798|ref|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus]
gi|46367787|ref|NP_002559.2| polyadenylate-binding protein 1 [Homo sapiens]
gi|383872540|ref|NP_001244826.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|73974130|ref|XP_856708.1| PREDICTED: polyadenylate-binding protein 1 isoform 6 [Canis lupus
familiaris]
gi|194036975|ref|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [Sus scrofa]
gi|332213999|ref|XP_003256115.1| PREDICTED: polyadenylate-binding protein 1 [Nomascus leucogenys]
gi|344273312|ref|XP_003408467.1| PREDICTED: polyadenylate-binding protein 1-like [Loxodonta
africana]
gi|402878853|ref|XP_003903080.1| PREDICTED: polyadenylate-binding protein 1 [Papio anubis]
gi|3183544|sp|P11940.2|PABP1_HUMAN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|47117093|sp|P61286.1|PABP1_BOVIN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|1562511|gb|AAD08718.1| poly(A)-binding protein [Homo sapiens]
gi|8979741|emb|CAB96752.1| polyadenylate-binding protein 1 [Bos taurus]
gi|16358990|gb|AAH15958.1| PABPC1 protein [Homo sapiens]
gi|23270713|gb|AAH23520.1| Poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
gi|74268035|gb|AAI02366.1| Poly(A) binding protein, cytoplasmic 1 [Bos taurus]
gi|119612221|gb|EAW91815.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|119612223|gb|EAW91817.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|123993665|gb|ABM84434.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|123999981|gb|ABM87499.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|168278070|dbj|BAG11013.1| polyadenylate-binding protein 1 [synthetic construct]
gi|296480464|tpg|DAA22579.1| TPA: polyadenylate-binding protein 1 [Bos taurus]
gi|380811722|gb|AFE77736.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940022|gb|AFI33616.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940024|gb|AFI33617.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 636
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|26354649|dbj|BAC40951.1| unnamed protein product [Mus musculus]
Length = 636
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIKKMNGMLLNDRKVFV 170
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|432102707|gb|ELK30188.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 650
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 40/58 (68%), Gaps = 2/58 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
F+ FG VT A +I+ G+ KG+G V+FS+ EEA+KA+ EM+GK+L R L+V R
Sbjct: 322 FAPFGTVTSAKVIVKGGRR--KGFGFVSFSSREEAKKAVEEMHGKMLSARPLYVSYAR 377
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D F+ FG + ++ D+ N KG+G V F T E A KA+ EMNG L+ R +FV
Sbjct: 123 LYDLFAGFGTILSCKVVSDE--NGPKGHGFVHFETREAADKAIKEMNGSLVKERKVFVGQ 180
Query: 62 V-RPSRR 67
RP++R
Sbjct: 181 FKRPNQR 187
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
FSQ+G ++ I+ D SKG+G + F +A++A+ E+NGK GR ++V +
Sbjct: 219 FSQYGPLSSVKIMTDDS-GKSKGFGFIRFECHADAKRAIEEVNGKQFGGRKIYVSRAQ 275
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
M+ + FS G + + D + S GYG V F E+A AL MN +L G+
Sbjct: 34 MLYEKFSAAGPILSVRVCRDALSSRSLGYGYVNFHRPEDAGHALNTMNFDVLHGK 88
>gi|18402803|ref|NP_566672.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|20466724|gb|AAM20679.1| unknown protein [Arabidopsis thaliana]
gi|21536799|gb|AAM61131.1| unknown [Arabidopsis thaliana]
gi|25084257|gb|AAN72206.1| unknown protein [Arabidopsis thaliana]
gi|332642921|gb|AEE76442.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 374
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD--NV 62
AF FG++ + IIMDK SKGY + ++TEE A AL EMNGK+++G ++ VD
Sbjct: 301 AFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGKIINGWMIVVDVAKT 360
Query: 63 RPSRR 67
+P R+
Sbjct: 361 KPFRQ 365
>gi|31560656|ref|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus]
gi|341941223|sp|P29341.2|PABP1_MOUSE RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|13278026|gb|AAH03870.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|15029950|gb|AAH11207.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|18606321|gb|AAH23145.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|26336853|dbj|BAC32110.1| unnamed protein product [Mus musculus]
gi|29145018|gb|AAH46233.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|74144576|dbj|BAE36120.1| unnamed protein product [Mus musculus]
gi|74145579|dbj|BAE36203.1| unnamed protein product [Mus musculus]
gi|74179929|dbj|BAE36522.1| unnamed protein product [Mus musculus]
gi|74198265|dbj|BAE35302.1| unnamed protein product [Mus musculus]
gi|74198320|dbj|BAE35327.1| unnamed protein product [Mus musculus]
gi|74214225|dbj|BAE40360.1| unnamed protein product [Mus musculus]
gi|74223327|dbj|BAE21553.1| unnamed protein product [Mus musculus]
gi|148676871|gb|EDL08818.1| poly A binding protein, cytoplasmic 1 [Mus musculus]
Length = 636
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|225435044|ref|XP_002284323.1| PREDICTED: cold-inducible RNA-binding protein [Vitis vinifera]
gi|297746123|emb|CBI16179.3| unnamed protein product [Vitis vinifera]
Length = 112
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 43/65 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + FS FG VT+A +I D KG+G V F +E +A+KAL MNG+++ GR++FV+
Sbjct: 41 LIEMFSPFGVVTQARLIKDPKTQRPKGFGFVKFESEVDAEKALKAMNGRIVRGRLIFVEI 100
Query: 62 VRPSR 66
+ +R
Sbjct: 101 AKTTR 105
>gi|387861093|gb|AFK08576.1| glycine-rich RNA binding protein 2a [Camelina sativa]
gi|387861099|gb|AFK08579.1| glycine-rich RNA binding protein 2a [Camelina sativa]
Length = 160
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 2/66 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD- 60
+ DAF+ FG+V A +I+D+ S+G+G V FS E A A++EM+GK L+GR + V+
Sbjct: 52 LRDAFAHFGEVVDAKVIVDRETGRSRGFGFVNFSDETAASAAISEMDGKDLNGRNIRVNQ 111
Query: 61 -NVRPS 65
N RPS
Sbjct: 112 ANDRPS 117
>gi|291388359|ref|XP_002710763.1| PREDICTED: poly A binding protein, cytoplasmic 4 [Oryctolagus
cuniculus]
Length = 636
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|357442985|ref|XP_003591770.1| RNA-binding protein [Medicago truncatula]
gi|355480818|gb|AES62021.1| RNA-binding protein [Medicago truncatula]
Length = 284
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AF FG++ + +I+DK SKGY + ++TEE A AL EMNGK+++G ++ VD +
Sbjct: 211 AFEGFGELVEVKVIIDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKT 270
Query: 65 S-RRYN 69
+ RYN
Sbjct: 271 TPPRYN 276
>gi|110002613|gb|AAI18569.1| PABPC4 protein [Homo sapiens]
Length = 252
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 64 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 115
>gi|327283838|ref|XP_003226647.1| PREDICTED: polyadenylate-binding protein 1-like [Anolis
carolinensis]
Length = 636
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|291408594|ref|XP_002720593.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oryctolagus cuniculus]
Length = 636
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|281350417|gb|EFB26001.1| hypothetical protein PANDA_001865 [Ailuropoda melanoleuca]
Length = 640
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 318 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 369
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 119 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 174
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 211 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 267
>gi|126342235|ref|XP_001367420.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 635
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+N KG+G V FS+ EEA KA+TEMNG+++ + L++
Sbjct: 314 FSPFGTITSAKVMMEGGRN--KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYI 365
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
D FS FG + ++ D+ + SKGYG V F T + A++A+ +MNG LL+ R +FV
Sbjct: 117 DTFSAFGNILSCKVVCDE--HGSKGYGFVHFETRDAAERAIDKMNGMLLNDRKVFV 170
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F +FG ++ D+ TSKG+G V F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 211 FGKFGPSLSVKVMTDES-GTSKGFGFVNFERHEDAQKAVEEMNGKELNGKKIYV 263
>gi|431901758|gb|ELK08635.1| Polyadenylate-binding protein 1 [Pteropus alecto]
Length = 636
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|53754|emb|CAA46522.1| poly(A) binding protein [Mus musculus]
Length = 636
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|356517261|ref|XP_003527307.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Glycine max]
Length = 145
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 40/61 (65%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
+ F++FG+V A ++ D+ SKG+G V ++T E+A K + M+GK LDG V+F + R
Sbjct: 67 EEFAKFGEVVHARVVTDRVSGYSKGFGFVQYATIEDAAKGIEGMDGKFLDGWVIFAEYAR 126
Query: 64 P 64
P
Sbjct: 127 P 127
>gi|242084350|ref|XP_002442600.1| hypothetical protein SORBIDRAFT_08g022740 [Sorghum bicolor]
gi|241943293|gb|EES16438.1| hypothetical protein SORBIDRAFT_08g022740 [Sorghum bicolor]
Length = 165
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 41/60 (68%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AFS +G+V ++ II+D+ S+G+G VTFSTEE + A+ MNGK LDGR + V+ +
Sbjct: 27 AFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQS 86
>gi|207080212|ref|NP_001128842.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|75070631|sp|Q5R8F7.1|PABP1_PONAB RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|55730462|emb|CAH91953.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|432881580|ref|XP_004073850.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 631
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS+FG T ++ D+ +G+G V+F E+AQKA+ EMNGK L+GR++FV
Sbjct: 207 LKEIFSKFGNATSVRVMTDES-GGGRGFGFVSFENHEDAQKAVDEMNGKELNGRIMFV 263
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N S+GYG V F T + A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSRGYGFVHFETHDAAERAIEKMNGMLLNDRKVFV 170
>gi|387017716|gb|AFJ50976.1| Polyadenylate-binding protein 1-like [Crotalus adamanteus]
Length = 636
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|326917956|ref|XP_003205259.1| PREDICTED: polyadenylate-binding protein 1-like [Meleagris
gallopavo]
Length = 652
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 329 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 380
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 130 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 185
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 222 LKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 278
>gi|193787802|dbj|BAG53005.1| unnamed protein product [Homo sapiens]
Length = 636
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKDLFGKFGAALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|74212334|dbj|BAE30919.1| unnamed protein product [Mus musculus]
Length = 636
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F +FG ++ D+G SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKELFGKFGPALSVKVMTDEG-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|209155104|gb|ACI33784.1| Cold-inducible RNA-binding protein [Salmo salar]
gi|223648252|gb|ACN10884.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 167
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS++GQ+++ +I D+ S+G+G VTF +EA+ A+ MNGK LDGR + VD
Sbjct: 21 LEDVFSKYGQISEVVVIKDRETQRSRGFGFVTFENPDEAKDAMLAMNGKSLDGRQIRVDQ 80
Query: 62 VRPS 65
S
Sbjct: 81 AGKS 84
>gi|149637721|ref|XP_001509272.1| PREDICTED: polyadenylate-binding protein 1-like [Ornithorhynchus
anatinus]
Length = 636
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|395818359|ref|XP_003782600.1| PREDICTED: polyadenylate-binding protein 1, partial [Otolemur
garnettii]
Length = 539
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 282 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 333
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQ MNGK L+G+ ++V
Sbjct: 175 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQXXXXXMNGKELNGKQIYV 231
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 26 SKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 105 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 138
>gi|544421|sp|Q99069.1|GRP1_SORBI RecName: Full=Glycine-rich RNA-binding protein 1
gi|21623|emb|CAA40863.1| glycine-rich RNA-binding protein [Sorghum bicolor]
Length = 142
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ AFS +G+V ++ II+D+ S+G+G VTFSTEE + A+ MNGK LDGR + V+
Sbjct: 3 LHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNE 62
Query: 62 VRP 64
+
Sbjct: 63 AQS 65
>gi|348529271|ref|XP_003452137.1| PREDICTED: polyadenylate-binding protein 1-like [Oreochromis
niloticus]
Length = 635
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV 170
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS++G ++ D+ SKG+G V+F E+AQKA+ EMNGK L+GR ++V
Sbjct: 207 LKELFSKYGPALSIRVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGRQVYV 263
>gi|291408596|ref|XP_002720594.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oryctolagus cuniculus]
Length = 614
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|242045928|ref|XP_002460835.1| hypothetical protein SORBIDRAFT_02g035890 [Sorghum bicolor]
gi|241924212|gb|EER97356.1| hypothetical protein SORBIDRAFT_02g035890 [Sorghum bicolor]
Length = 131
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 43/62 (69%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS+FGQV +A +I D+ S+G+G V ++T +EA +A+ M+GK LDG V+F +
Sbjct: 52 LKEAFSKFGQVIEARVITDRISGYSRGFGFVKYATVQEAGEAIKGMDGKFLDGWVIFAEY 111
Query: 62 VR 63
+
Sbjct: 112 AK 113
>gi|356576103|ref|XP_003556173.1| PREDICTED: polyadenylate-binding protein 5-like isoform 2 [Glycine
max]
Length = 642
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS+FG +T +++D SKG G V+FST EEA KAL EMNGKL+ + L+V
Sbjct: 334 LKDLFSEFGTITSCKVMIDS-NGRSKGSGFVSFSTPEEASKALNEMNGKLIGRKPLYV 390
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F+ FG V + +D SKGYG V F EE AQ A+ +NG L++ + ++V
Sbjct: 139 LHDTFAAFGTVLSCKVALDS-SGQSKGYGFVQFDNEEAAQNAIKRLNGMLINDKQVYV 195
Score = 37.7 bits (86), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDG---RVLF 58
+ D FSQ Q+ + D+ K +S GY V F+ ++A A+ +N L+G R++F
Sbjct: 51 LYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDASNAMELLNFTPLNGKPIRIMF 110
>gi|224046575|ref|XP_002200268.1| PREDICTED: polyadenylate-binding protein 1 [Taeniopygia guttata]
Length = 637
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|432907583|ref|XP_004077665.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 635
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV 170
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F +G ++ D GK SKG+G V+F E+AQKA+ +MNGK L+GR ++V
Sbjct: 207 LKELFGNYGPALSVRVMTDDTGK--SKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYV 263
>gi|324509105|gb|ADY43836.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 661
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
I D FS FG + + D+ N SKGYG V F TEE AQKA+ ++NG LL+G+ ++V
Sbjct: 123 IYDTFSMFGNILSCKVANDEESN-SKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGK 181
Query: 62 VRP 64
+P
Sbjct: 182 FQP 184
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F +G++T A ++ D SKG+G V F +EA KA+TEMNGK++ + L+V
Sbjct: 325 FESYGKITSAKVMCDD-NGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYV 377
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMN 48
F++FG++T ++ D SKG+G V F E+A+KA+ EM+
Sbjct: 220 FAKFGKITSCAVMSD-ADGKSKGFGFVAFENPEDAEKAVNEMH 261
>gi|19705459|ref|NP_599180.1| polyadenylate-binding protein 1 [Rattus norvegicus]
gi|47605941|sp|Q9EPH8.1|PABP1_RAT RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|12188891|emb|CAC21554.1| poly(A) binding protein [Rattus norvegicus]
gi|52789215|gb|AAH83176.1| Poly(A) binding protein, cytoplasmic 1 [Rattus norvegicus]
gi|149066519|gb|EDM16392.1| rCG60104 [Rattus norvegicus]
Length = 636
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|154175004|ref|YP_001407864.1| nicotinate phosphoribosyltransferase [Campylobacter curvus
525.92]
gi|402547017|ref|ZP_10843890.1| hypothetical protein HMPREF1139_0586 [Campylobacter sp. FOBRC14]
gi|153793162|gb|EAU00743.2| nicotinate phosphoribosyltransferase [Campylobacter curvus
525.92]
gi|401016852|gb|EJP75615.1| hypothetical protein HMPREF1139_0586 [Campylobacter sp. FOBRC14]
Length = 65
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AF+QFG+V +A I+ D+ N SKG+G V E Q+A+ +N K L GR L V+
Sbjct: 1 MKEAFAQFGEVKRAKIVKDRDTNRSKGFGFVEMDDANEGQRAIDALNDKELGGRTLRVNE 60
Query: 62 VRP 64
RP
Sbjct: 61 ARP 63
>gi|71896197|ref|NP_001026768.1| polyadenylate-binding protein 1 [Gallus gallus]
gi|53130422|emb|CAG31540.1| hypothetical protein RCJMB04_7l20 [Gallus gallus]
Length = 637
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|335775987|gb|AEH58755.1| polyadenylate-binding protein 1-like protein [Equus caballus]
Length = 510
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 188 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 239
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 81 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 137
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 29/39 (74%)
Query: 21 KGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ +N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 6 RDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 44
>gi|78070599|gb|AAI06909.1| PABPC4 protein [Homo sapiens]
Length = 281
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 64 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 115
>gi|330793331|ref|XP_003284738.1| RNA-binding region-containing protein (RNP-1) [Dictyostelium
purpureum]
gi|325085338|gb|EGC38747.1| RNA-binding region-containing protein (RNP-1) [Dictyostelium
purpureum]
Length = 565
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 41/58 (70%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG +T A ++ D TSKG+G V +++ +EA +A+TEMNG+++ + L+V
Sbjct: 301 LREVFSQFGTITSAVVMKDDKATTSKGFGFVCYTSPDEATRAVTEMNGRMIGTKPLYV 358
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + ++ D N+SKG+G V + +++ A KA+ ++NG +++G+ +FV
Sbjct: 114 LYDTFSAFGNILSCKVVTDD-NNSSKGFGFVHYESQDSADKAIAKVNGMMINGQKVFVGP 172
Query: 62 VRPSR 66
+ S+
Sbjct: 173 FKSSK 177
Score = 35.0 bits (79), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 30/58 (51%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + + +G +T I++D+ SKG+ F + + A+ + NGK+ G+ L+
Sbjct: 204 LKELLAPYGTITNVAIMLDEKTGKSKGFAFANFESADAAKNVVEIENGKVFHGKPLYA 261
>gi|312067233|ref|XP_003136646.1| hypothetical protein LOAG_01058 [Loa loa]
gi|307768188|gb|EFO27422.1| hypothetical protein LOAG_01058 [Loa loa]
Length = 655
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
I D FS FG + + D+ N SKGYG V F TEE AQKA+ ++NG LL+G+ ++V
Sbjct: 122 IYDTFSMFGNILSCKVANDEESN-SKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGK 180
Query: 62 VRP 64
+P
Sbjct: 181 FQP 183
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F +G++T A ++ D SKG+G V F +EA KA+TEMNGK++ + L+V
Sbjct: 324 FEAYGKITSAKVMCDD-NGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYV 376
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDG--RVLFV 59
FS+FG++T A +++D SKG+G V F E+A+KA+TEM+ L G R L+V
Sbjct: 219 FSKFGKITSAAVMVD-ADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERKLYV 273
>gi|410987610|ref|XP_004000091.1| PREDICTED: polyadenylate-binding protein 1 [Felis catus]
Length = 672
Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 350 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 401
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 151 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 206
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 243 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 299
>gi|225706362|gb|ACO09027.1| Cold-inducible RNA-binding protein [Osmerus mordax]
Length = 172
Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ D FS++GQ+++ +I D+ S+G+G VTF +EA+ A+ MNGK LDGR + VD
Sbjct: 21 LEDVFSKYGQISEVVVIKDRETQRSRGFGFVTFDNPDEAKDAMLAMNGKSLDGRQIRVD 79
>gi|13435438|gb|AAH04587.1| Pabpc1 protein [Mus musculus]
Length = 527
Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 205 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 256
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 6 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 61
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 98 LKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 154
>gi|432107630|gb|ELK32863.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 565
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 243 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 294
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 44 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 99
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 136 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 192
>gi|338728570|ref|XP_001492678.3| PREDICTED: polyadenylate-binding protein 1 [Equus caballus]
Length = 565
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 243 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 294
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 44 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 99
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 136 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 192
>gi|356576101|ref|XP_003556172.1| PREDICTED: polyadenylate-binding protein 5-like isoform 1 [Glycine
max]
Length = 652
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS+FG +T +++D SKG G V+FST EEA KAL EMNGKL+ + L+V
Sbjct: 334 LKDLFSEFGTITSCKVMIDS-NGRSKGSGFVSFSTPEEASKALNEMNGKLIGRKPLYV 390
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F+ FG V + +D SKGYG V F EE AQ A+ +NG L++ + ++V
Sbjct: 139 LHDTFAAFGTVLSCKVALDS-SGQSKGYGFVQFDNEEAAQNAIKRLNGMLINDKQVYV 195
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDG---RVLF 58
+ D FSQ Q+ + D+ K +S GY V F+ ++A A+ +N L+G R++F
Sbjct: 51 LYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDASNAMELLNFTPLNGKPIRIMF 110
>gi|410904819|ref|XP_003965889.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 636
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV 170
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS++G ++ D G SKG+G V+F E+AQKA+ +MNGK L+GR ++V
Sbjct: 207 LKELFSKYGPALSIRVMTDDG-GKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYV 263
>gi|326527061|dbj|BAK04472.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 139
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 41/62 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS+FGQVT A +I D+ S+G+G V ++T EEA + + M+GK DG V+F +
Sbjct: 56 LREAFSKFGQVTDARVITDRISGYSRGFGFVKYATVEEAAEGIKGMDGKFFDGWVIFAEY 115
Query: 62 VR 63
+
Sbjct: 116 AK 117
>gi|374376206|ref|ZP_09633864.1| RNP-1 like RNA-binding protein [Niabella soli DSM 19437]
gi|373233046|gb|EHP52841.1| RNP-1 like RNA-binding protein [Niabella soli DSM 19437]
Length = 110
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 44/69 (63%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + F+ +G+VT A I+ DK N SKG+G V +T+EEA+ A+ +NG +DGR + V+
Sbjct: 17 LQNLFAPYGEVTSAKIVSDKFTNRSKGFGFVEMATDEEAKAAIEALNGTEVDGRNIVVNE 76
Query: 62 VRPSRRYNT 70
RP N+
Sbjct: 77 SRPKEGGNS 85
>gi|348588301|ref|XP_003479905.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 599
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 277 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 328
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 78 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 133
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 170 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 226
>gi|413918857|gb|AFW58789.1| hypothetical protein ZEAMMB73_983608 [Zea mays]
Length = 412
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS FG++T ++ D+ SKG G V FST EEA +ALTEMNGK++ G+ L+V
Sbjct: 332 LCELFSNFGKITSYKVMRDQ-NGLSKGSGFVAFSTREEASQALTEMNGKMISGKPLYV 388
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS FG + + +D+ SKG+G V + EE AQ A+ +NG L++ + +FV
Sbjct: 138 LHETFSSFGTILSCKVAVDEA-GQSKGFGFVQYDKEEAAQNAIKSLNGMLINDKPVFV 194
>gi|395512247|ref|XP_003760354.1| PREDICTED: polyadenylate-binding protein 1 [Sarcophilus harrisii]
Length = 654
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 334 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 385
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 135 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 190
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 227 LKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 283
>gi|449284083|gb|EMC90664.1| Polyadenylate-binding protein 1, partial [Columba livia]
Length = 573
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 250 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 301
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 51 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 106
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 143 LKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 199
>gi|426236179|ref|XP_004012050.1| PREDICTED: polyadenylate-binding protein 1 [Ovis aries]
Length = 577
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 255 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 306
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 56 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 111
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 148 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 204
>gi|319762031|ref|YP_004125968.1| rnp-1 like RNA-binding protein [Alicycliphilus denitrificans BC]
gi|330826150|ref|YP_004389453.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans
K601]
gi|317116592|gb|ADU99080.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans BC]
gi|329311522|gb|AEB85937.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans
K601]
Length = 102
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
FSQFG VT A ++M++ SKG+G V ++ EAQ+A+ ++GK +DGR L V+ RP
Sbjct: 23 FSQFGAVTSAKVMMERDTGRSKGFGFVEMASGAEAQEAINGLHGKSVDGRALTVNVARP 81
>gi|170579093|ref|XP_001894673.1| polyadenylate-binding protein 1 [Brugia malayi]
gi|158598601|gb|EDP36463.1| polyadenylate-binding protein 1, putative [Brugia malayi]
Length = 655
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
I D FS FG + + D+ N SKGYG V F TEE AQKA+ ++NG LL+G+ ++V
Sbjct: 122 IYDTFSMFGNILSCKVANDEESN-SKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGK 180
Query: 62 VRP 64
+P
Sbjct: 181 FQP 183
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F +G++T A ++ D SKG+G V F +EA KA+TEMNGK++ + L+V
Sbjct: 324 FEAYGKITSAKVMCDD-NGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYV 376
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDG--RVLFV 59
FS+FG++T A +++D SKG+G V F E+A+KA+TEM+ L G R L+V
Sbjct: 219 FSKFGKITSAAVMVD-ADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERKLYV 273
>gi|121606987|ref|YP_984316.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans
CJ2]
gi|120595956|gb|ABM39395.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans
CJ2]
Length = 152
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +F QFG VT A ++M++ SKG+G V +++ EAQ A+ MNG+ L GR + V+
Sbjct: 19 LQQSFGQFGAVTSAKVMMERDTGRSKGFGFVEMASDAEAQAAINGMNGQPLGGRSVVVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|226500552|ref|NP_001148723.1| ELAV-like protein 4 [Zea mays]
gi|195621654|gb|ACG32657.1| ELAV-like protein 4 [Zea mays]
Length = 127
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 43/62 (69%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS+FGQV +A +I D+ S+G+G V ++T +EA +A+ M+GK LDG V+F +
Sbjct: 50 LKEAFSKFGQVIEARVITDRISGYSRGFGFVKYATVQEAGEAIEGMDGKFLDGWVIFAEY 109
Query: 62 VR 63
+
Sbjct: 110 AK 111
>gi|444706057|gb|ELW47419.1| Polyadenylate-binding protein 1 [Tupaia chinensis]
Length = 636
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERVSEKMNGMLLNDRKVFV 170
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|440913295|gb|ELR62762.1| Polyadenylate-binding protein 1, partial [Bos grunniens mutus]
Length = 572
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 250 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 301
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 51 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 106
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 143 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 199
>gi|212275199|ref|NP_001130054.1| uncharacterized protein LOC100191146 [Zea mays]
gi|194688180|gb|ACF78174.1| unknown [Zea mays]
gi|414878270|tpg|DAA55401.1| TPA: glycine-rich RNA-binding protein 7 [Zea mays]
Length = 254
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 44/61 (72%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D F+++GQV +A II+D+ S+G+G VT+++ EEA A+T ++GK LDGR + V++
Sbjct: 46 LRDEFAKYGQVIEARIIIDRESGRSRGFGFVTYTSSEEASAAITALDGKTLDGRSIRVNH 105
Query: 62 V 62
Sbjct: 106 A 106
>gi|197097606|ref|NP_001126097.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|55730342|emb|CAH91893.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRVVATKPLYV 365
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|255652857|ref|NP_001157308.1| poly(A) binding protein, cytoplasmic 3 [Mus musculus]
gi|12855391|dbj|BAB30319.1| unnamed protein product [Mus musculus]
gi|26325704|dbj|BAC26606.1| unnamed protein product [Mus musculus]
Length = 643
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 39/54 (72%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A + M+ G+ SKG+G V FS+ EEA KA+TEMNGK++ + L+V
Sbjct: 324 FSPFGTITSAKVTMEGGR--SKGFGFVCFSSPEEATKAVTEMNGKIVATKPLYV 375
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + ++ D+ N SKGYG V F T+EEA++A+ +MNG L+ +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFVGR 172
Query: 62 VRPSRR 67
+ SRR
Sbjct: 173 FK-SRR 177
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+A+KA+ EMNGK L+G+ ++V
Sbjct: 207 LQDLFGRFGPALSVKVMTDES-GKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYV 263
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
M+ + FS G + + D+ S GY SV F E+A++AL MN ++ G+ + +
Sbjct: 26 MLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAERALDTMNFDVIKGKPVRI 84
>gi|148670144|gb|EDL02091.1| RIKEN cDNA 4932702K14 [Mus musculus]
Length = 642
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 39/54 (72%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A + M+ G+ SKG+G V FS+ EEA KA+TEMNGK++ + L+V
Sbjct: 324 FSPFGTITSAKVTMEGGR--SKGFGFVCFSSPEEATKAVTEMNGKIVATKPLYV 375
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + ++ D+ N SKGYG V F T+EEA++A+ +MNG L+ +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFVGR 172
Query: 62 VRPSRR 67
+ SRR
Sbjct: 173 FK-SRR 177
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+A+KA+ EMNGK L+G+ ++V
Sbjct: 207 LQDLFGRFGPALSVKVMTDES-GKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYV 263
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
M+ + FS G + + D+ S GY SV F E+A++AL MN ++ G+ + +
Sbjct: 26 MLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAERALDTMNFDVIKGKPVRI 84
>gi|444706907|gb|ELW48224.1| Polyadenylate-binding protein 4 [Tupaia chinensis]
Length = 692
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 117 DTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D GK SKG+G V++ E+A KA+ EMNGK + G+V+FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDPTGK--SKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
>gi|224062834|ref|XP_002300896.1| predicted protein [Populus trichocarpa]
gi|222842622|gb|EEE80169.1| predicted protein [Populus trichocarpa]
Length = 648
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 50/79 (63%), Gaps = 6/79 (7%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + FS+FG +T +++D+ + SKG G V FST EEA +AL+EMNGK++ + L+V
Sbjct: 331 LKELFSEFGSITSCKVMLDQ-QGLSKGSGFVAFSTPEEASRALSEMNGKMIGKKPLYVAI 389
Query: 62 VRPSRRYNTDVPLARLKIH 80
+ RR +ARL+ H
Sbjct: 390 AQ--RREER---MARLQAH 403
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F+ FG V + +D SKGYG + F EE+AQ A+ +NG L++ R ++V
Sbjct: 137 LYETFASFGPVLSCKVAVDN-NGQSKGYGFIQFENEEDAQSAINRLNGMLVNDREVYV 193
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDG---RVLFVD 60
D FSQ V + D+ TS GY V FS ++A KA+ +N L+G R++F
Sbjct: 51 DLFSQVAPVVSTRVCRDQAGLTSLGYAYVNFSNPQDAAKAMEVLNFTPLNGKPIRIMFSH 110
Query: 61 NVRPSRR 67
+RR
Sbjct: 111 RDPTTRR 117
Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS +G +T A ++ D+ S+G+G V F + + A A+ ++NG +V +V
Sbjct: 232 FSSYGAITSAIVMKDQ-NGKSRGFGFVNFQSPDSAAAAVEKLNGMTFSDKVWYV 284
>gi|91790716|ref|YP_551668.1| RNA recognition motif-containing protein [Polaromonas sp. JS666]
gi|91699941|gb|ABE46770.1| RNA-binding region RNP-1 (RNA recognition motif) [Polaromonas sp.
JS666]
Length = 151
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +F QFG VT A ++M++ SKG+G V ++ EAQ A+ MNG+ L GR + V+
Sbjct: 19 LQQSFGQFGSVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGMNGQPLGGRSVVVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|299473651|emb|CBN78045.1| poly(A) binding protein [Ectocarpus siliculosus]
Length = 688
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 4 DAFSQFGQVTKATIIMDKGKNT-SKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+AF+ +G +T A +++D N SKG+G V FS EEA KA+TEMNGK+L + ++V
Sbjct: 358 EAFAPYGTITSARVMVDNSNNNQSKGFGFVCFSAPEEATKAITEMNGKMLLNKPIYV 414
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + + D SKGYG V + A A+ ++NG L+ G+ + V
Sbjct: 146 LYDTFSLFGNILSCKVATDDA-GESKGYGYVHYEGGVSANMAIAKINGMLIAGKQVHV 202
>gi|242076392|ref|XP_002448132.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
gi|241939315|gb|EES12460.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
Length = 664
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS FG++T ++ D+ SKG G V FST EEA +ALTEMNGK++ G+ L+V
Sbjct: 344 LRELFSNFGKITSYKVMRDQ-NGLSKGSGFVAFSTREEASQALTEMNGKMISGKPLYV 400
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS FG + + MD+ SKG+G V + EE AQ A+ +NG L++ + +FV
Sbjct: 150 LHETFSSFGTILSCKVAMDEA-GQSKGFGFVQYEKEEAAQNAIKSLNGMLINDKPVFV 206
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDG---RVLF 58
+ + FSQ GQV + D S GY V FS +A +AL +N +L+ RV++
Sbjct: 62 LYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFSNPLDAARALEVLNFAVLNNKPIRVMY 121
Query: 59 VDNVRPSRR 67
+ SRR
Sbjct: 122 SNRDPSSRR 130
Score = 34.3 bits (77), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 5/56 (8%)
Query: 6 FSQFGQVTKATII--MDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F ++G +T A ++ MD GK S+ +G + F + A +A+ E+NGK ++ + +V
Sbjct: 245 FGEYGSITSAVVMIGMD-GK--SRCFGFINFENPDAASRAVQELNGKKINDKEWYV 297
>gi|226509825|ref|NP_001150518.1| ELAV-like protein 4 [Zea mays]
gi|195639828|gb|ACG39382.1| ELAV-like protein 4 [Zea mays]
gi|414590519|tpg|DAA41090.1| TPA: ELAV-like protein 4 [Zea mays]
Length = 129
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS+FGQV +A +I D+ S+G+G V ++T +EA +A+ M+GK LD V+F +
Sbjct: 50 LKEAFSKFGQVIEARVITDRISGYSRGFGFVKYATVQEAGEAIKGMDGKFLDSWVIFAET 109
Query: 62 VRPSRRYNTDVPL 74
P +N + L
Sbjct: 110 --PHNHHNKEHQL 120
>gi|426215230|ref|XP_004001877.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Ovis aries]
Length = 631
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+V+FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFV 263
>gi|392592716|gb|EIW82042.1| RNA-binding domain-containing protein [Coniophora puteana
RWD-64-598 SS2]
Length = 589
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+A F++ G+V AT+ MD+ S+G+G V FST E +KA+ E+NGK +DGR + VD
Sbjct: 348 WLAKEFAECGEVVSATVQMDRSTGRSRGFGYVHFSTSEAVEKAI-ELNGKEIDGRAVNVD 406
Query: 61 NVRPSRR 67
P +
Sbjct: 407 KSNPPNK 413
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS+ G+V + D+ KG+G V FS E A+KA M G LDGR + +D
Sbjct: 449 LWEAFSEHGEVKNVRLPTDRESGRPKGFGYVEFSDVETAKKAHAAMQGVELDGRSVRLDF 508
Query: 62 VRP 64
+P
Sbjct: 509 SQP 511
>gi|348553000|ref|XP_003462315.1| PREDICTED: polyadenylate-binding protein 4-like isoform 4 [Cavia
porcellus]
Length = 631
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK ++G+++FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFV 263
>gi|410263252|gb|JAA19592.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+++FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
>gi|344287655|ref|XP_003415568.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Loxodonta
africana]
Length = 631
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+V+FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
>gi|302810024|ref|XP_002986704.1| hypothetical protein SELMODRAFT_182522 [Selaginella moellendorffii]
gi|300145592|gb|EFJ12267.1| hypothetical protein SELMODRAFT_182522 [Selaginella moellendorffii]
Length = 730
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+A F Q+G+V + +I DK N SKGYG V F+ EEA +A+TE++ + GR+L V
Sbjct: 241 LASLFGQYGEVVQVHLICDKETNRSKGYGYVGFTLPEEATRAMTELDNSIFQGRLLHV 298
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 22 GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYNTDVP 73
G + S G+G V F + + A++ EM G +LDG L ++PSR + + P
Sbjct: 568 GASLSMGFGFVEFDSADTAERVCKEMQGSVLDGHALV---LQPSRAGDDEKP 616
>gi|224081795|ref|XP_002196994.1| PREDICTED: polyadenylate-binding protein 4 [Taeniopygia guttata]
Length = 629
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T++ A +A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV 170
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F ++G+ ++ D GK SKG+G V+F EEA KA+ EMNGK ++G++LFV
Sbjct: 207 LKELFGKYGKTLSVKVMTDPTGK--SKGFGFVSFEKHEEANKAVEEMNGKDINGKMLFV 263
>gi|226496497|ref|NP_001150207.1| LOC100283837 [Zea mays]
gi|195621336|gb|ACG32498.1| nucleolin [Zea mays]
gi|195637560|gb|ACG38248.1| nucleolin [Zea mays]
gi|223948323|gb|ACN28245.1| unknown [Zea mays]
gi|413917478|gb|AFW57410.1| nucleolin [Zea mays]
Length = 140
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 40/61 (65%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
+AF++FG+V A ++ D+ SKG+G V ++T EEA K + +GK LDG V+F + +
Sbjct: 53 EAFAEFGEVLHARVVTDRVSGFSKGFGFVRYATTEEAAKGIEGKDGKFLDGWVIFAEYAK 112
Query: 64 P 64
P
Sbjct: 113 P 113
>gi|126342328|ref|XP_001373103.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 942
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 39/55 (70%), Gaps = 2/55 (3%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
AFS FG +T A ++M+ G S+G+G V FS EEA KA++EMNGKL+ + L+V
Sbjct: 618 AFSPFGTITSAKVMMEGGH--SRGFGFVCFSAPEEAAKAVSEMNGKLVATKPLYV 670
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F +FG ++ D+ SKG+G V++ E+AQ+A+ EMNGK +G+ ++V
Sbjct: 512 LTEVFGKFGHALSVKVMTDE-SGKSKGFGFVSYEKHEDAQRAVDEMNGKEFNGKRIYV 568
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG + +I D+ N SKGYG V F ++ A KA+ +MNG L+ ++V
Sbjct: 424 FSAFGNILSCKVISDE--NGSKGYGFVHFENQQAADKAIEKMNGVRLNNLKVYV 475
>gi|426360413|ref|XP_004047438.1| PREDICTED: polyadenylate-binding protein 1 [Gorilla gorilla
gorilla]
Length = 682
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 360 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 411
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 161 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 216
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 253 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 309
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ N
Sbjct: 44 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNXXXXEASN 101
Query: 62 V 62
+
Sbjct: 102 I 102
>gi|410966844|ref|XP_003989937.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Felis catus]
Length = 631
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+V+FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
>gi|149023878|gb|EDL80375.1| rCG31475, isoform CRA_a [Rattus norvegicus]
Length = 660
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFV 170
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 2 IADAFSQFGQVTKATIIMD-KGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D GK SKG+G V++ E+A KA+ EMNGK + G+ +FV
Sbjct: 207 LRELFSQFGKTLSVKVMRDCSGK--SKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFV 263
>gi|395853072|ref|XP_003799044.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Otolemur
garnettii]
Length = 633
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+V+FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
>gi|348513241|ref|XP_003444151.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oreochromis niloticus]
Length = 637
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS++G ++ D+ S+G+G V+F E+AQKA+ EMNGK ++G++++V
Sbjct: 207 LRELFSKYGNAMSIRVMTDEN-GKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYV 263
>gi|348513239|ref|XP_003444150.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oreochromis niloticus]
Length = 634
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS++G ++ D+ S+G+G V+F E+AQKA+ EMNGK ++G++++V
Sbjct: 207 LRELFSKYGNAMSIRVMTDEN-GKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYV 263
>gi|338721952|ref|XP_003364452.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Equus
caballus]
Length = 631
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+V+FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
>gi|326933139|ref|XP_003212666.1| PREDICTED: polyadenylate-binding protein 4-like [Meleagris
gallopavo]
Length = 636
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 320 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 371
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
D FS FG + ++ D+ N SKGY V F T++ A +A+ +MNG LL+ R +FV
Sbjct: 123 DTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV 176
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 40/59 (67%), Gaps = 3/59 (5%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS++G+ ++ D GK SKG+G V+F E+A KA+ EMNGK ++G+++FV
Sbjct: 213 LKELFSKYGKTLSVKVMTDPTGK--SKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFV 269
>gi|402854031|ref|XP_003891684.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Papio anubis]
Length = 631
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+++FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
>gi|354485887|ref|XP_003505113.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
Length = 685
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 336 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 387
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 137 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 192
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+ +FV
Sbjct: 229 LKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFV 285
>gi|334349575|ref|XP_003342221.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 707
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L++
Sbjct: 383 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYI 434
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
D FS FG + ++ D+ + SKGYG V F T + A++A+ +MNG LL+ R +FV
Sbjct: 186 DTFSAFGNILSCKVVCDE--HGSKGYGFVHFETRDAAERAIDKMNGMLLNDRKVFV 239
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F +FG ++ D+ TSKG+G V F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 280 FGKFGPALSVKVMTDE-SGTSKGFGFVNFERHEDAQKAVEEMNGKELNGKKIYV 332
>gi|332248417|ref|XP_003273360.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|383411099|gb|AFH28763.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
gi|384941234|gb|AFI34222.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
Length = 631
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+++FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
>gi|332531199|ref|ZP_08407112.1| RNP-1 like RNA-binding protein [Hylemonella gracilis ATCC 19624]
gi|332039306|gb|EGI75719.1| RNP-1 like RNA-binding protein [Hylemonella gracilis ATCC 19624]
Length = 131
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ AF QFG VT A ++M++ SKG+G V ++ EAQ A+ +NG+ L GR + V+
Sbjct: 19 LEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGLNGQPLSGRNVVVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|297283068|ref|XP_001113342.2| PREDICTED: polyadenylate-binding protein 4 [Macaca mulatta]
Length = 657
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 311 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 362
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 117 DTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 18 IMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+M SKG+G V++ E+A KA+ EMNGK + G+++FV
Sbjct: 219 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 260
>gi|195654321|gb|ACG46628.1| glycine-rich RNA-binding protein 7 [Zea mays]
gi|238010482|gb|ACR36276.1| unknown [Zea mays]
Length = 252
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 43/59 (72%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV 62
D F+++GQV +A II+D+ S+G+G VT+++ EEA A+T ++GK LDGR + V++
Sbjct: 48 DEFAKYGQVIEARIIIDRESGRSRGFGFVTYTSSEEASAAITALDGKTLDGRSIRVNHA 106
>gi|208431836|ref|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [Homo sapiens]
gi|332808512|ref|XP_003308043.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730718|ref|XP_003775778.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pongo abelii]
gi|426329064|ref|XP_004025564.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Gorilla
gorilla gorilla]
gi|119627671|gb|EAX07266.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_f [Homo sapiens]
gi|410227602|gb|JAA11020.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+++FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
>gi|118101731|ref|XP_417821.2| PREDICTED: polyadenylate-binding protein 4 [Gallus gallus]
Length = 630
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T++ A +A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV 170
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 40/59 (67%), Gaps = 3/59 (5%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS++G+ ++ D GK SKG+G V+F E+A KA+ EMNGK ++G+++FV
Sbjct: 207 LKELFSKYGKTLSVKVMTDPTGK--SKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFV 263
>gi|91094515|ref|XP_971941.1| PREDICTED: similar to poly A binding protein [Tribolium castaneum]
gi|270000753|gb|EEZ97200.1| hypothetical protein TcasGA2_TC004389 [Tribolium castaneum]
Length = 565
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FSQFG +T A ++ + G+ SKG+G V FST EEA KA+TEM+G+++ + ++V
Sbjct: 316 FSQFGAITSAKVMTEGGR--SKGFGFVCFSTPEEASKAITEMDGRMIGSKPIYV 367
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +G +T + ++M TSKG+G + F E A+KA+TEMN L+G L+V
Sbjct: 209 LYDLFKNYGTIT-SCVVMANPDGTSKGFGFIAFEEPESAEKAVTEMNNYELNGTNLYV 265
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + + +D SKGYG V F + E A KA+ ++NG LL+G+ ++V
Sbjct: 118 DTFSAFGNILSCKVAIDD-DGVSKGYGFVHFESIEAANKAIEKVNGMLLNGKKVYVGKFI 176
Query: 64 P 64
P
Sbjct: 177 P 177
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVL 57
++ + FS GQ+ + D S GY V FS EA++ L MN LL G+ +
Sbjct: 27 LLYEKFSPAGQILSLRVCRDSRTKQSLGYAYVNFSQTIEAERVLDTMNFDLLKGKPI 83
>gi|41388837|gb|AAH65540.1| PABPC4 protein [Homo sapiens]
Length = 631
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
++ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 114 VLYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+++FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
>gi|22507391|ref|NP_683717.1| polyadenylate-binding protein 4 isoform 2 [Mus musculus]
gi|16307591|gb|AAH10345.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 615
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+ +FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDSS-GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFV 263
>gi|348552994|ref|XP_003462312.1| PREDICTED: polyadenylate-binding protein 4-like isoform 1 [Cavia
porcellus]
Length = 660
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK ++G+++FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFV 263
>gi|145219698|ref|YP_001130407.1| RNP-1 like RNA-binding protein [Chlorobium phaeovibrioides DSM
265]
gi|145205862|gb|ABP36905.1| RNP-1 like RNA-binding protein [Chlorobium phaeovibrioides DSM
265]
Length = 90
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ DAFS+FGQV A IIMDK SKG+G V S ++ A++A+ M+ K GR + V+
Sbjct: 17 LRDAFSEFGQVESANIIMDKFSGRSKGFGFVEMSDDDAAREAIEAMHNKDFMGRSIMVNE 76
Query: 62 VRP 64
+P
Sbjct: 77 AKP 79
>gi|417403696|gb|JAA48646.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 660
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 117 DTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+V+FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
>gi|149023879|gb|EDL80376.1| rCG31475, isoform CRA_b [Rattus norvegicus]
Length = 656
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFV 170
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 2 IADAFSQFGQVTKATIIMD-KGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D GK SKG+G V++ E+A KA+ EMNGK + G+ +FV
Sbjct: 207 LRELFSQFGKTLSVKVMRDCSGK--SKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFV 263
>gi|403292062|ref|XP_003937076.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 630
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+++FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
>gi|350585908|ref|XP_003482078.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Sus scrofa]
Length = 660
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 117 DTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+V+FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
>gi|410966840|ref|XP_003989935.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Felis catus]
Length = 660
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 117 DTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+V+FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
>gi|402854027|ref|XP_003891682.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Papio anubis]
Length = 660
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 117 DTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+++FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
>gi|383417509|gb|AFH31968.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 456
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 311 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 362
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 9 FGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 211 FGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 260
>gi|348552998|ref|XP_003462314.1| PREDICTED: polyadenylate-binding protein 4-like isoform 3 [Cavia
porcellus]
Length = 615
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK ++G+++FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFV 263
>gi|344287653|ref|XP_003415567.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Loxodonta
africana]
Length = 660
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 117 DTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+V+FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
>gi|432937502|ref|XP_004082431.1| PREDICTED: polyadenylate-binding protein 4-like [Oryzias latipes]
Length = 629
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T++ A +A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV 170
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F ++G+ ++ D S+G+G V+F E+A KA+ E+NG L+G+ +FV
Sbjct: 207 LKEMFEKYGKTLSVKVMTDSS-GKSRGFGFVSFEKHEDANKAVEEINGTELNGKTVFV 263
>gi|351713677|gb|EHB16596.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 661
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+V+FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
>gi|281344898|gb|EFB20482.1| hypothetical protein PANDA_020836 [Ailuropoda melanoleuca]
Length = 674
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 327 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 378
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 130 DTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 183
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+V+FV
Sbjct: 220 LKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 276
>gi|208431833|ref|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [Homo sapiens]
gi|332808508|ref|XP_513344.3| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pan
troglodytes]
gi|395730714|ref|XP_002811047.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pongo abelii]
gi|397488842|ref|XP_003815452.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pan paniscus]
gi|426329062|ref|XP_004025563.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Gorilla
gorilla gorilla]
gi|66267552|gb|AAH94755.1| PABPC4 protein [Homo sapiens]
gi|119627668|gb|EAX07263.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_c [Homo sapiens]
gi|410227598|gb|JAA11018.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410227604|gb|JAA11021.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 117 DTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+++FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
>gi|34785785|gb|AAH57481.1| Cirbp protein [Danio rerio]
Length = 121
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 41/61 (67%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS++G + K +I D+ + S+G+G VTF E+A+ A+ MNGK +DGR++ VD
Sbjct: 14 LEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAAMNGKQVDGRMIRVDE 73
Query: 62 V 62
Sbjct: 74 A 74
>gi|426215226|ref|XP_004001875.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Ovis aries]
Length = 660
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 117 DTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+V+FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFV 263
>gi|410263248|gb|JAA19590.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410263254|gb|JAA19593.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+++FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
>gi|395853068|ref|XP_003799042.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Otolemur
garnettii]
Length = 662
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+V+FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
>gi|395548760|ref|XP_003775245.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 730
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS EEA A+TEMNG+L+ + L+V
Sbjct: 413 FSSFGTITSAKVMMNNGR--SKGFGFVCFSAPEEATTAVTEMNGRLVASKPLYV 464
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ DAFS FG + +I D N SKGYG V F E A++A+ +MNG LL+ +FV +
Sbjct: 214 LYDAFSSFGNILSCKVITDD--NGSKGYGFVHFEHRESAERAIQKMNGILLNDLKIFVGH 271
Query: 62 VR 63
+
Sbjct: 272 FK 273
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
++ F +FG ++ D SKG+G V F E+AQ A+ MNGK L+GR ++
Sbjct: 306 LSKIFEKFGPTLSVKVMRDDC-GRSKGFGFVNFQKHEDAQNAIDNMNGKELNGRQIYA 362
>gi|357465579|ref|XP_003603074.1| Poly(A)-binding protein [Medicago truncatula]
gi|355492122|gb|AES73325.1| Poly(A)-binding protein [Medicago truncatula]
Length = 622
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+++ FS+FG VT I+ D + S+G G V FST EEA +AL EMNGK++ G+ L+V
Sbjct: 322 LSELFSEFGTVTSCKILRDP-QGISRGSGFVAFSTPEEATRALAEMNGKMVAGKPLYV 378
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + I MD SKGYG V F EE AQ A+ ++NG LL+ + ++V +
Sbjct: 128 LYDTFSIFGNILSCKIAMD-ASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYVGH 186
Query: 62 VRPSRRYNTDVPLARLKIH 80
+ R+ + D L+ K +
Sbjct: 187 FQ--RKQDRDNALSNAKFN 203
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVL 57
+ D F+Q GQV I D S GYG V FS +A KA+ +N L+ + +
Sbjct: 40 LYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMDVLNFTPLNNKPI 95
>gi|338721949|ref|XP_003364451.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Equus
caballus]
Length = 660
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+V+FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
>gi|332248413|ref|XP_003273358.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|355557859|gb|EHH14639.1| hypothetical protein EGK_00600 [Macaca mulatta]
gi|383411103|gb|AFH28765.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
gi|384941238|gb|AFI34224.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
Length = 660
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 117 DTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+++FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
>gi|148698435|gb|EDL30382.1| mCG5546, isoform CRA_a [Mus musculus]
Length = 632
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 331 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 382
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 132 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 187
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+ +FV
Sbjct: 224 LKELFSQFGKTLSVKVMRDSS-GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFV 280
>gi|119627670|gb|EAX07265.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_e [Homo sapiens]
Length = 615
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+++FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
>gi|410966842|ref|XP_003989936.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Felis catus]
Length = 644
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+V+FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
>gi|403292058|ref|XP_003937074.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 659
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 117 DTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+++FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
>gi|344287651|ref|XP_003415566.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Loxodonta
africana]
Length = 644
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+V+FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
>gi|307207781|gb|EFN85399.1| Polyadenylate-binding protein 1 [Harpegnathos saltator]
Length = 552
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F+ FG +T A ++M++G+ SKG+G V FS EEA KA+TEMNG+++ + L+V
Sbjct: 239 FTPFGTITSAKVMMEEGR--SKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYV 290
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + + D+ SKGYG V F TEE A K++ ++NG LL+G+ ++V
Sbjct: 117 DTFSAFGNILSCKVAQDES-GASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFI 175
Query: 64 PSR 66
P +
Sbjct: 176 PRK 178
>gi|198386356|ref|NP_001094008.1| polyadenylate-binding protein 4 [Rattus norvegicus]
gi|183985833|gb|AAI66452.1| Pabpc4 protein [Rattus norvegicus]
Length = 644
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFV 170
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 2 IADAFSQFGQVTKATIIMD-KGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D GK SKG+G V++ E+A KA+ EMNGK + G+ +FV
Sbjct: 207 LRELFSQFGKTLSVKVMRDCSGK--SKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFV 263
>gi|34419622|ref|NP_570951.2| polyadenylate-binding protein 4 isoform 1 [Mus musculus]
gi|33991671|gb|AAH56432.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
gi|148698437|gb|EDL30384.1| mCG5546, isoform CRA_c [Mus musculus]
Length = 660
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+ +FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDS-SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFV 263
>gi|398802241|ref|ZP_10561457.1| RRM domain-containing RNA-binding protein [Polaromonas sp. CF318]
gi|398100710|gb|EJL90943.1| RRM domain-containing RNA-binding protein [Polaromonas sp. CF318]
Length = 148
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +F QFG VT A ++M++ SKG+G V ++ EAQ A+ MNG+ L GR + V+
Sbjct: 19 LQQSFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGMNGQPLGGRSVVVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|125558733|gb|EAZ04269.1| hypothetical protein OsI_26412 [Oryza sativa Indica Group]
Length = 133
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS+FGQV +A +I D+ S+G+G V ++T EEA + + M+GK LDG V+F +
Sbjct: 51 LREAFSKFGQVIEARVITDRISGYSRGFGFVKYATVEEAGEGIKGMDGKFLDGWVIFAEY 110
Query: 62 VRPSRRYNTDVPLA 75
+ P A
Sbjct: 111 AKQREAQQPAQPAA 124
>gi|115472673|ref|NP_001059935.1| Os07g0549800 [Oryza sativa Japonica Group]
gi|28564803|dbj|BAC57733.1| RNA recognition motif (RRM)-containing protein-like [Oryza sativa
Japonica Group]
gi|113611471|dbj|BAF21849.1| Os07g0549800 [Oryza sativa Japonica Group]
gi|125600644|gb|EAZ40220.1| hypothetical protein OsJ_24665 [Oryza sativa Japonica Group]
gi|215767980|dbj|BAH00209.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 133
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS+FGQV +A +I D+ S+G+G V ++T EEA + + M+GK LDG V+F +
Sbjct: 51 LREAFSKFGQVIEARVITDRISGYSRGFGFVKYATVEEAGEGIKGMDGKFLDGWVIFAEY 110
Query: 62 VRPSRRYNTDVPLA 75
+ P A
Sbjct: 111 AKQREAQQPAQPAA 124
>gi|417403591|gb|JAA48595.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 644
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+V+FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
>gi|357445711|ref|XP_003593133.1| Glycine-rich RNA-binding protein [Medicago truncatula]
gi|355482181|gb|AES63384.1| Glycine-rich RNA-binding protein [Medicago truncatula]
Length = 491
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 42/63 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ DAF ++G++ +A +++DK S+G+G VTF +E ++A+ MNG LDGR + VD
Sbjct: 245 LKDAFEKYGKLVEAKVVVDKFSGRSRGFGFVTFDDKEAMEEAIEAMNGIDLDGRTITVDK 304
Query: 62 VRP 64
+P
Sbjct: 305 AQP 307
>gi|348552996|ref|XP_003462313.1| PREDICTED: polyadenylate-binding protein 4-like isoform 2 [Cavia
porcellus]
Length = 644
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK ++G+++FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFV 263
>gi|48734702|gb|AAH71591.1| PABPC4 protein [Homo sapiens]
Length = 660
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+++FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
>gi|13096978|gb|AAH03283.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 660
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+ +FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDS-SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFV 263
>gi|73976763|ref|XP_857000.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Canis lupus
familiaris]
Length = 644
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+V+FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
>gi|301790633|ref|XP_002930398.1| PREDICTED: polyadenylate-binding protein 4-like [Ailuropoda
melanoleuca]
Length = 644
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+V+FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
>gi|426215228|ref|XP_004001876.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Ovis aries]
Length = 644
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+V+FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFV 263
>gi|383417507|gb|AFH31967.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|383417511|gb|AFH31969.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 459
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|335291035|ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Sus scrofa]
Length = 644
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+V+FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
>gi|291399204|ref|XP_002715240.1| PREDICTED: poly A binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 644
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+V+FV
Sbjct: 207 LKDLFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGKEIGGKVIFV 263
>gi|301125993|ref|XP_002909814.1| polyadenylate-binding protein, putative [Phytophthora infestans
T30-4]
gi|262103703|gb|EEY61755.1| polyadenylate-binding protein, putative [Phytophthora infestans
T30-4]
Length = 587
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ +AF++ G +T + ++ D N S+G+G V FST EEA KA+ EMNGKL+ G+ ++V
Sbjct: 294 LREAFAECGTITSSRVMRDPNGN-SRGFGFVCFSTPEEANKAVAEMNGKLISGKPVYV 350
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + + ++ SKGYG V + T E A +A+ ++NG L+ G +FV
Sbjct: 95 LYDTFSLFGNILSCKVAIEHTTGNSKGYGYVHYETAEAATEAIAKINGMLIAGTEVFV 152
>gi|149693775|ref|XP_001503500.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Equus
caballus]
Length = 644
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+V+FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
>gi|119627667|gb|EAX07262.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_b [Homo sapiens]
Length = 645
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+++FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
>gi|119627673|gb|EAX07268.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_h [Homo sapiens]
Length = 661
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 117 DTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+++FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
>gi|53804863|ref|YP_113486.1| RNA-binding protein [Methylococcus capsulatus str. Bath]
gi|53758624|gb|AAU92915.1| RNA-binding protein [Methylococcus capsulatus str. Bath]
Length = 95
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 38/59 (64%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
F+ +G V A ++MD+ S+G+G V +++EAQ A+ +NGK +DGR L V+ RP
Sbjct: 23 FAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAGLNGKEMDGRNLMVNEARP 81
>gi|402854029|ref|XP_003891683.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Papio anubis]
Length = 644
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+++FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
>gi|149023880|gb|EDL80377.1| rCG31475, isoform CRA_c [Rattus norvegicus]
Length = 630
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFV 170
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 2 IADAFSQFGQVTKATIIMD-KGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D GK SKG+G V++ E+A KA+ EMNGK + G+ +FV
Sbjct: 207 LRELFSQFGKTLSVKVMRDCSGK--SKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFV 263
>gi|4504715|ref|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo sapiens]
gi|332808510|ref|XP_003308042.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730716|ref|XP_003775777.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pongo abelii]
gi|397488844|ref|XP_003815453.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pan paniscus]
gi|426329066|ref|XP_004025565.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Gorilla
gorilla gorilla]
gi|12229875|sp|Q13310.1|PABP4_HUMAN RecName: Full=Polyadenylate-binding protein 4; Short=PABP-4;
Short=Poly(A)-binding protein 4; AltName:
Full=Activated-platelet protein 1; Short=APP-1; AltName:
Full=Inducible poly(A)-binding protein; Short=iPABP
gi|1163177|gb|AAC50350.1| inducible poly(A)-binding protein [Homo sapiens]
gi|2801403|gb|AAB97309.1| polyadenylate binding protein [Homo sapiens]
gi|119627669|gb|EAX07264.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_d [Homo sapiens]
gi|410227600|gb|JAA11019.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|1585757|prf||2201474A inducible poly(A)-binding protein
Length = 644
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+++FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
>gi|395853070|ref|XP_003799043.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Otolemur
garnettii]
Length = 646
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+V+FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
>gi|355745175|gb|EHH49800.1| hypothetical protein EGM_00521 [Macaca fascicularis]
Length = 635
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 289 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 340
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 90 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 145
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+++FV
Sbjct: 182 LKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 238
>gi|332030568|gb|EGI70256.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 678
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F+ FG +T A ++M++G+ SKG+G V FS EEA KA+TEMNG+++ + L+V
Sbjct: 359 FTPFGTITSAKVMMEEGR--SKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYV 410
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + + D+ SKGYG V F TEE A K++ ++NG LL+G+ ++V
Sbjct: 160 DTFSAFGNILSCKVAQDES-GASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFI 218
Query: 64 PSR 66
P +
Sbjct: 219 PRK 221
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGK-LLDGRVLFV 59
+ D F ++G +T + M K S+G+G V F + A++A+ E+NGK + +G+ ++V
Sbjct: 251 LKDMFEKYGTITSHKV-MSKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEIAEGKCMYV 308
>gi|301120388|ref|XP_002907921.1| polyadenylate-binding protein 1-B [Phytophthora infestans T30-4]
gi|262102952|gb|EEY61004.1| polyadenylate-binding protein 1-B [Phytophthora infestans T30-4]
Length = 640
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ +AF++ G +T + ++ D N S+G+G V FST EEA KA+ EMNGKL+ G+ ++V
Sbjct: 348 LREAFAECGTITSSRVMRDPNGN-SRGFGFVCFSTPEEANKAVAEMNGKLISGKPVYV 404
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + + ++ SKGYG V + T E A +A+ ++NG L+ G +FV
Sbjct: 149 LYDTFSLFGNILSCKVAIEHTTGNSKGYGYVHYETAEAATEAIAKINGMLIAGTEVFV 206
>gi|148698436|gb|EDL30383.1| mCG5546, isoform CRA_b [Mus musculus]
Length = 580
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 331 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 382
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 132 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 187
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+ +FV
Sbjct: 224 LKELFSQFGKTLSVKVMRDS-SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFV 280
>gi|139948570|ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]
gi|134024563|gb|AAI34510.1| PABPC4 protein [Bos taurus]
gi|296488909|tpg|DAA31022.1| TPA: poly A binding protein, cytoplasmic 4 [Bos taurus]
Length = 645
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+V+FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFV 263
>gi|390465724|ref|XP_002750686.2| PREDICTED: polyadenylate-binding protein 4 [Callithrix jacchus]
Length = 656
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F QFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+++FV
Sbjct: 207 LKELFIQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
>gi|341900148|gb|EGT56083.1| hypothetical protein CAEBREN_04295 [Caenorhabditis brenneri]
Length = 649
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
I D FS FG + + +D+ + +SKGYG V F TEE AQ A+ ++NG LL G+ +FV
Sbjct: 136 IYDTFSLFGNILSCKVAIDE-EGSSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGK 194
Query: 62 VRPSRRYNTDV 72
+P + N ++
Sbjct: 195 FQPRAQRNREL 205
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F FG +T A ++ D+ SKG+G V F EEA A+TEMN K++ + L+V
Sbjct: 337 FESFGNITSAKVMTDE-NGRSKGFGFVCFEKPEEATTAVTEMNSKMVCSKPLYV 389
>gi|332248415|ref|XP_003273359.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|383411101|gb|AFH28764.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
gi|384941236|gb|AFI34223.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
Length = 644
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+++FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
>gi|410263250|gb|JAA19591.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 644
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+++FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
>gi|403292060|ref|XP_003937075.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 643
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+++FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
>gi|291233817|ref|XP_002736851.1| PREDICTED: heterogeneous nuclear ribonucleoprotein M-like
[Saccoglossus kowalevskii]
Length = 615
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
M+ D F +FG+V A I M+ G+ SKGYGSV F + E A+ A+ MNG +LDGR + V
Sbjct: 554 MLKDKFREFGRVMYAEIKMENGR--SKGYGSVRFESPESARTAINMMNGSVLDGRTISV 610
>gi|74189486|dbj|BAE22747.1| unnamed protein product [Mus musculus]
Length = 590
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 243 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 294
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 46 DTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 99
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+ +FV
Sbjct: 136 LKELFSQFGKTLSVKVMRDS-SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFV 192
>gi|268566587|ref|XP_002639761.1| C. briggsae CBR-PAB-1 protein [Caenorhabditis briggsae]
Length = 651
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
I D FS FG + + +D+ + +SKGYG V F TEE AQ A+ ++NG LL G+ +FV
Sbjct: 136 IYDTFSLFGNILSCKVAIDE-EGSSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGK 194
Query: 62 VRPSRRYNTDV 72
+P + N ++
Sbjct: 195 FQPRAQRNREL 205
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F FG +T A ++ D+ SKG+G V F EEA A++EMN K++ + L+V
Sbjct: 337 FESFGNITSAKVMTDE-NGRSKGFGFVCFEKPEEATTAVSEMNSKMVCSKPLYV 389
>gi|121607153|ref|YP_994960.1| RNP-1 like RNA-binding protein [Verminephrobacter eiseniae
EF01-2]
gi|121551793|gb|ABM55942.1| RNP-1 like RNA-binding protein [Verminephrobacter eiseniae
EF01-2]
Length = 175
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 38/63 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ AF QFG V A ++M++ SKG+G V ++ EAQ A+ MNG+ L GR + V+
Sbjct: 19 LEQAFGQFGAVASAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGMNGQPLGGRSIVVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|91095037|ref|XP_975975.1| PREDICTED: similar to poly A binding protein isoform 4 [Tribolium
castaneum]
gi|270014772|gb|EFA11220.1| hypothetical protein TcasGA2_TC005185 [Tribolium castaneum]
Length = 607
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 39/54 (72%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ N SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 316 FSPFGTITSAKVMMED--NRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 367
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + + D+ TSKGYG V F TEE A K++ ++NG LL+G+ ++V
Sbjct: 117 DTFSAFGNILSCKVAQDEN-GTSKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFI 175
Query: 64 PSR 66
P +
Sbjct: 176 PRK 178
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGK-LLDGRVLFV 59
F ++G++T + IM K SKG+G V F + E A+ A+ +NGK ++DG+ L+V
Sbjct: 212 FEKYGKIT-SYKIMSKDDGKSKGFGFVAFESPEAAETAVEALNGKEIIDGKPLYV 265
>gi|47217896|emb|CAG05018.1| unnamed protein product [Tetraodon nigroviridis]
Length = 558
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 301 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 352
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T E A++A+ +MNG LL+ R +FV
Sbjct: 102 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV 157
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS++G ++ D SKG+G V+F E+AQKA+ +MNGK L+GR ++V
Sbjct: 194 LKELFSKYGPALSIRVMTDDS-GKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYV 250
>gi|119612224|gb|EAW91818.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_d [Homo
sapiens]
Length = 472
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|449268618|gb|EMC79472.1| Polyadenylate-binding protein 4 [Columba livia]
Length = 630
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGAITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T++ A +A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV 170
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 40/59 (67%), Gaps = 3/59 (5%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS++G+ ++ D GK SKG+G V+F E+A KA+ EMNGK ++G+++FV
Sbjct: 207 LKELFSKYGKTLSVKVMTDPTGK--SKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFV 263
>gi|357122439|ref|XP_003562923.1| PREDICTED: uncharacterized protein LOC100844345 [Brachypodium
distachyon]
Length = 206
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 42/63 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ DAF +FG VT+A +++DK S+G+ VTF +++ + A+ +MNG LDGR + VD
Sbjct: 23 LKDAFRKFGNVTEAKVVLDKFSGRSRGFAFVTFDEKKDMEAAIEDMNGLDLDGRAITVDK 82
Query: 62 VRP 64
+P
Sbjct: 83 AQP 85
>gi|333030558|ref|ZP_08458619.1| RNP-1 like RNA-binding protein [Bacteroides coprosuis DSM 18011]
gi|332741155|gb|EGJ71637.1| RNP-1 like RNA-binding protein [Bacteroides coprosuis DSM 18011]
Length = 104
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+A+ F +G VT A +I DK N SKG+G V +E A KA+ E+NG +DGR + V
Sbjct: 17 LAEIFEPYGAVTSARVIKDKFTNRSKGFGFVEMEDDEAATKAINELNGAEVDGRPIAVSE 76
Query: 62 VRP 64
RP
Sbjct: 77 ARP 79
>gi|693937|emb|CAA88401.1| polyadenylate binding protein II [Homo sapiens]
Length = 522
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 289 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 340
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 90 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 145
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 182 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 238
>gi|402217291|gb|EJT97372.1| RNA-binding domain-containing protein [Dacryopinax sp. DJM-731
SS1]
Length = 167
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD--NV 62
AFSQFGQV ++ D+ S+G+G VTF T +EAQ A+ +N + LDGR + V+ N
Sbjct: 32 AFSQFGQVLDCIVMKDRESGRSRGFGFVTFGTSQEAQAAIDGLNEQDLDGRRIRVNLANA 91
Query: 63 RP 64
RP
Sbjct: 92 RP 93
>gi|351723185|ref|NP_001236758.1| uncharacterized protein LOC100499841 [Glycine max]
gi|255627057|gb|ACU13873.1| unknown [Glycine max]
Length = 143
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD- 60
+ DAFS FG V A +I D+ S+G+G V FS +E A AL+ M+GK L+GR + V
Sbjct: 52 LKDAFSGFGDVVDAKVITDRDSGRSRGFGFVNFSNDESASSALSAMDGKDLNGRSIRVSY 111
Query: 61 -NVRPS 65
N +PS
Sbjct: 112 ANDKPS 117
>gi|431922543|gb|ELK19486.1| Polyadenylate-binding protein 4 [Pteropus alecto]
Length = 720
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 117 DTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK ++G+V+FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKVIFV 263
>gi|224059524|ref|XP_002299889.1| predicted protein [Populus trichocarpa]
gi|222847147|gb|EEE84694.1| predicted protein [Populus trichocarpa]
Length = 88
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 43/62 (69%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
FS FG V++A ++++ KG+G VTF +E +A KAL MNG++++GR++FV+ + +
Sbjct: 27 FSPFGAVSEARLVVESKTLRPKGFGFVTFESEADAHKALKAMNGRIVNGRLIFVEVAKDT 86
Query: 66 RR 67
R
Sbjct: 87 ER 88
>gi|255944269|ref|XP_002562902.1| Pc20g03510 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587637|emb|CAP85680.1| Pc20g03510 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 151
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + F QFG++ +A ++ D+ S+G+G V F+T+ EA AL MN + DGRV+ VD
Sbjct: 15 LREGFQQFGEIQEAIVVKDRATQRSRGFGFVRFATDAEADAALGAMNNQEFDGRVIRVDK 74
Query: 62 V--RPSR 66
RP R
Sbjct: 75 AFDRPQR 81
>gi|195621182|gb|ACG32421.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 146
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 43/63 (68%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS +G+V ++ II+D+ S+G+G VTFSTE+ + A+ MNGK LDGR + V+
Sbjct: 24 LNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKELDGRNITVNE 83
Query: 62 VRP 64
+
Sbjct: 84 AQS 86
>gi|20257687|gb|AAM16009.1| glycine-rich RNA binding protein [Zea mays]
gi|20257713|gb|AAM16022.1| glycine-rich RNA binding protein [Zea mays]
Length = 149
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 43/63 (68%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS +G+V ++ II+D+ S+G+G VTFSTE+ + A+ MNGK LDGR + V+
Sbjct: 27 LNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKELDGRNITVNE 86
Query: 62 VRP 64
+
Sbjct: 87 AQS 89
>gi|20257715|gb|AAM16023.1| glycine-rich RNA binding protein [Zea mays]
gi|20257721|gb|AAM16026.1| glycine-rich RNA binding protein [Zea mays]
Length = 148
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 43/63 (68%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS +G+V ++ II+D+ S+G+G VTFSTE+ + A+ MNGK LDGR + V+
Sbjct: 27 LNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKELDGRNITVNE 86
Query: 62 VRP 64
+
Sbjct: 87 AQS 89
>gi|326514928|dbj|BAJ99825.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326517426|dbj|BAK00080.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 153
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 40/61 (65%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
+AF++FG+V A +I D+ SKG+G V + T E+A K + M+G+ LDG V+F + R
Sbjct: 66 EAFAKFGEVEHARVITDRVTGFSKGFGFVRYVTVEDAAKGIEGMDGEFLDGWVIFAEYAR 125
Query: 64 P 64
P
Sbjct: 126 P 126
>gi|147899475|ref|NP_001085069.1| polyadenylate-binding protein 1-B [Xenopus laevis]
gi|82236793|sp|Q6IP09.1|PABPB_XENLA RecName: Full=Polyadenylate-binding protein 1-B; Short=PABP-1-B;
Short=Poly(A)-binding protein 1-B; Short=xPABP1-B;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-B
gi|47940242|gb|AAH72110.1| MGC79060 protein [Xenopus laevis]
gi|80476254|gb|AAI08463.1| MGC79060 protein [Xenopus laevis]
Length = 633
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F+ FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FTPFGSITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV 170
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 2 IADAFSQFGQVTKATIIMD-KGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F Q+G ++ D GK S+G+G V+F E+AQKA+ +MNGK L+G+ +FV
Sbjct: 207 LKEWFGQYGAALSVKVMTDDHGK--SRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFV 263
>gi|258568356|ref|XP_002584922.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237906368|gb|EEP80769.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 745
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + FSQ + AT + D KGYG VTF+ E+AQ+AL E+NG + DGR + ++
Sbjct: 62 LTEYFSQSYPIKHATAVADPQTKQCKGYGFVTFTDVEDAQRALEELNGSIFDGRKIVIEV 121
Query: 62 VRPSRR 67
P RR
Sbjct: 122 AEPRRR 127
Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
F +G+V A I KG S G+G + ++ A+KA+ +NGK LDGR L VD
Sbjct: 180 FRSYGKVKHADIPR-KGTRHS-GFGFIVMRGKKNAEKAIEGVNGKELDGRTLAVD 232
>gi|193212689|ref|YP_001998642.1| RNP-1 like RNA-binding protein [Chlorobaculum parvum NCIB 8327]
gi|193086166|gb|ACF11442.1| RNP-1 like RNA-binding protein [Chlorobaculum parvum NCIB 8327]
Length = 88
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ DAFS+FG V KA++IMDK SKG+G V + +EEA +A++ +N L R + V+
Sbjct: 17 LRDAFSEFGDVAKASVIMDKFSGRSKGFGFVEMTNDEEANEAISSLNESKLGSRNIKVNE 76
Query: 62 VRP 64
+P
Sbjct: 77 AKP 79
>gi|332030569|gb|EGI70257.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 657
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F+ FG +T A ++M++G+ SKG+G V FS EEA KA+TEMNG+++ + L+V
Sbjct: 338 FTPFGTITSAKVMMEEGR--SKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYV 389
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + + D+ SKGYG V F TEE A K++ ++NG LL+G+ ++V
Sbjct: 139 DTFSAFGNILSCKVTQDES-GASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGKFI 197
Query: 64 PSR 66
P +
Sbjct: 198 PRK 200
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 2 IADAFSQFGQVTKATI-IMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGK-LLDGRVLFV 59
+ + F ++G +T + I D GK S+G+G V F A++A+ ++NGK + +G+ ++V
Sbjct: 230 LKEMFEKYGTITSHKVMIKDDGK--SRGFGFVAFEDPNSAEQAVLDLNGKEIAEGKCMYV 287
>gi|45544646|ref|NP_956311.1| cold inducible RNA binding protein isoform 2 [Danio rerio]
gi|28856196|gb|AAH48027.1| Cold inducible RNA binding protein [Danio rerio]
gi|182891172|gb|AAI64022.1| Cirbp protein [Danio rerio]
Length = 184
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 41/61 (67%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS++G + K +I D+ + S+G+G VTF E+A+ A+ MNGK +DGR++ VD
Sbjct: 21 LEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAAMNGKQVDGRMIRVDE 80
Query: 62 V 62
Sbjct: 81 A 81
>gi|388566786|ref|ZP_10153228.1| RNA recognition motif-containing protein [Hydrogenophaga sp. PBC]
gi|388265964|gb|EIK91512.1| RNA recognition motif-containing protein [Hydrogenophaga sp. PBC]
Length = 133
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ AFS FG V A ++M++ SKG+G V ++ EAQ A+ MNG+ L GR L V+
Sbjct: 19 LQQAFSAFGAVNSAKVMMERETGRSKGFGFVEMGSDSEAQSAIQGMNGQSLGGRSLVVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|297263480|ref|XP_001096930.2| PREDICTED: polyadenylate-binding protein 3 [Macaca mulatta]
Length = 592
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 359 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 410
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 160 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 215
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+A+KA+ EMNGK L+G+ ++V
Sbjct: 252 LKDLFGKFGPALSVKVVTDES-GKSKGFGFVSFERHEDARKAVDEMNGKELNGKQIYV 308
>gi|170574509|ref|XP_001892845.1| polyadenylate-binding protein 4 [Brugia malayi]
gi|158601405|gb|EDP38326.1| polyadenylate-binding protein 4, putative [Brugia malayi]
Length = 462
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
I D FS FG + + D+ N SKGYG V F TEE AQKA+ ++NG LL+G+ ++V
Sbjct: 122 IYDTFSMFGNILSCKVANDEELN-SKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGK 180
Query: 62 VRP 64
+P
Sbjct: 181 FQP 183
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F +G++T A ++ D SKG+G V F +EA KA+TEMNGK++ + L+V
Sbjct: 324 FEAYGKITSAKVMCDD-NGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYV 376
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDG--RVLFV 59
F +FG++T A +++D SKG+G V F E+A+KA+TEM+ L G R L+V
Sbjct: 219 FFKFGKITSAAVMVD-ADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERKLYV 273
>gi|20257695|gb|AAM16013.1| glycine-rich RNA binding protein [Zea mays]
Length = 149
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 43/63 (68%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS +G+V ++ II+D+ S+G+G VTFSTE+ + A+ MNGK LDGR + V+
Sbjct: 28 LNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKELDGRNITVNE 87
Query: 62 VRP 64
+
Sbjct: 88 AQS 90
>gi|162463657|ref|NP_001105707.1| glycine-rich protein1 [Zea mays]
gi|22293|emb|CAA43431.1| glycine-rich protein [Zea mays]
Length = 155
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ +AFS +G+V ++ II+D+ S+G+G VTFSTEE + + MNGK LDGR + V+
Sbjct: 24 LHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEERMRNRIEGMNGKELDGRNITVN 82
>gi|307165845|gb|EFN60208.1| Polyadenylate-binding protein 1 [Camponotus floridanus]
Length = 635
Score = 57.4 bits (137), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F+ FG +T A ++M++G+ SKG+G V FS EEA KA+TEMNG+++ + L+V
Sbjct: 316 FTPFGTITSAKVMMEEGR--SKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYV 367
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + + D+ SKGYG V F TEE A K++ ++NG LL+G+ ++V
Sbjct: 117 DTFSAFGNILSCKVAQDES-GASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFI 175
Query: 64 PSR 66
P +
Sbjct: 176 PRK 178
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGK-LLDGRVLFV 59
+ + F ++G +T + +M K S+G+G V F + A++A+ E+NGK + +G+ ++V
Sbjct: 208 LKEMFEKYGTIT-SHKVMSKDDGKSRGFGFVAFEDPDAAEQAVLELNGKDISEGKCMYV 265
>gi|406997918|gb|EKE15908.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 93
Score = 57.4 bits (137), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 37/63 (58%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + FSQ G V A II D+ SKG+G V STEE AQKA+ +GK GR L V+
Sbjct: 19 LGEHFSQAGAVESANIITDRMSGRSKGFGFVEMSTEEGAQKAIEMFHGKEFGGRTLTVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|380793569|gb|AFE68660.1| polyadenylate-binding protein 4 isoform 3, partial [Macaca mulatta]
Length = 485
Score = 57.4 bits (137), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+++FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
>gi|375103924|ref|ZP_09750185.1| RRM domain-containing RNA-binding protein [Burkholderiales
bacterium JOSHI_001]
gi|374664655|gb|EHR69440.1| RRM domain-containing RNA-binding protein [Burkholderiales
bacterium JOSHI_001]
Length = 129
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 38/59 (64%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
F++ G VT A ++MD+ SKG+G V + EEAQ A+ +++G +DGR L V+ RP
Sbjct: 23 FAECGTVTSAKVMMDRDSGRSKGFGFVEMGSHEEAQAAIRKLHGASVDGRALVVNEARP 81
>gi|217074874|gb|ACJ85797.1| unknown [Medicago truncatula]
Length = 494
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+++ FS+FG VT I+ D + S+G G V FST EEA +AL EMNGK++ G+ L+V
Sbjct: 322 LSELFSEFGTVTSCKILRDP-QGISRGSGFVAFSTPEEATRALAEMNGKMVAGKPLYV 378
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + I MD SKGYG V F EE AQ A+ ++NG LL+ + ++V +
Sbjct: 128 LYDTFSIFGNILSCKIAMD-ASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYVGH 186
Query: 62 VRPSRRYNTDVPLARLKIH 80
+ R+ + D L+ K +
Sbjct: 187 FQ--RKQDRDNALSNAKFN 203
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVL 57
+ D F+Q GQV I D S GYG V FS +A KA+ +N L+ + +
Sbjct: 40 LYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMDVLNFTPLNNKPI 95
>gi|20257711|gb|AAM16021.1| glycine-rich RNA binding protein [Zea mays]
Length = 150
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 43/63 (68%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS +G+V ++ II+D+ S+G+G VTFSTE+ + A+ MNGK LDGR + V+
Sbjct: 29 LNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKELDGRNITVNE 88
Query: 62 VRP 64
+
Sbjct: 89 AQS 91
>gi|411009683|ref|ZP_11386012.1| RNA-binding protein [Aeromonas aquariorum AAK1]
Length = 81
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
FSQFGQV K II+D+ SKG+G + EA+KA+ ++G + GR + V+ +P
Sbjct: 10 FSQFGQVDKVDIIIDRDTGQSKGFGFIEMPVNGEAEKAIAGLHGTEIGGRTITVNQAKP- 68
Query: 66 RRYNTDVPLARLKIH 80
TD P R + H
Sbjct: 69 ---KTDAPRGRPQRH 80
>gi|20257673|gb|AAM16002.1| glycine-rich RNA binding protein [Zea mays]
Length = 139
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 43/63 (68%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS +G+V ++ II+D+ S+G+G VTFSTE+ + A+ MNGK LDGR + V+
Sbjct: 18 LNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKELDGRNITVNE 77
Query: 62 VRP 64
+
Sbjct: 78 AQS 80
>gi|20257689|gb|AAM16010.1| glycine-rich RNA binding protein [Zea mays]
Length = 147
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 43/63 (68%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS +G+V ++ II+D+ S+G+G VTFSTE+ + A+ MNGK LDGR + V+
Sbjct: 26 LNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKELDGRNITVNE 85
Query: 62 VRP 64
+
Sbjct: 86 AQS 88
>gi|198282085|ref|NP_001105572.1| glycine-rich RNA binding protein [Zea mays]
gi|2668742|gb|AAB88616.1| glycine-rich RNA binding protein [Zea mays]
gi|194692162|gb|ACF80165.1| unknown [Zea mays]
gi|195623052|gb|ACG33356.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 145
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 43/63 (68%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS +G+V ++ II+D+ S+G+G VTFSTE+ + A+ MNGK LDGR + V+
Sbjct: 24 LNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKELDGRNITVNE 83
Query: 62 VRP 64
+
Sbjct: 84 AQS 86
>gi|392578419|gb|EIW71547.1| hypothetical protein TREMEDRAFT_56482 [Tremella mesenterica DSM
1558]
Length = 223
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD--N 61
DAF QFGQV + ++ D+ S+G+G VTFST EEA+ ++ +MN + LDGR + V+ N
Sbjct: 22 DAFMQFGQVLDSIVMKDRETGRSRGFGFVTFSTAEEAEISIQQMNEQPLDGRNIRVNMAN 81
Query: 62 VRPS 65
+P+
Sbjct: 82 AKPA 85
>gi|195618802|gb|ACG31231.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195625478|gb|ACG34569.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 146
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 43/63 (68%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS +G+V ++ II+D+ S+G+G VTFSTE+ + A+ MNGK LDGR + V+
Sbjct: 24 LNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKELDGRNITVNE 83
Query: 62 VRP 64
+
Sbjct: 84 AQS 86
>gi|410924411|ref|XP_003975675.1| PREDICTED: cold-inducible RNA-binding protein-like [Takifugu
rubripes]
Length = 170
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD- 60
+A+AF ++G + K +I DK S+G+G V + + E+A+ A+T MNGK LDGR + VD
Sbjct: 21 LAEAFGKYGTIEKVDVIRDKETGRSRGFGFVKYESVEDAKDAMTAMNGKSLDGRAIRVDE 80
Query: 61 ---NVRP 64
+RP
Sbjct: 81 AGKGLRP 87
>gi|20257675|gb|AAM16003.1| glycine-rich RNA binding protein [Zea mays]
Length = 156
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 43/63 (68%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS +G+V ++ II+D+ S+G+G VTFSTE+ + A+ MNGK LDGR + V+
Sbjct: 34 LNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKELDGRNITVNE 93
Query: 62 VRP 64
+
Sbjct: 94 AQS 96
>gi|20257669|gb|AAM16000.1| glycine-rich RNA binding protein [Zea mays]
Length = 155
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 43/63 (68%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS +G+V ++ II+D+ S+G+G VTFSTE+ + A+ MNGK LDGR + V+
Sbjct: 34 LNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKELDGRNITVNE 93
Query: 62 VRP 64
+
Sbjct: 94 AQS 96
>gi|194693774|gb|ACF80971.1| unknown [Zea mays]
Length = 133
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 43/63 (68%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS +G+V ++ II+D+ S+G+G VTFSTE+ + A+ MNGK LDGR + V+
Sbjct: 24 LNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKELDGRNITVNE 83
Query: 62 VRP 64
+
Sbjct: 84 AQS 86
>gi|115456445|ref|NP_001051823.1| Os03g0836200 [Oryza sativa Japonica Group]
gi|40714682|gb|AAR88588.1| putative RNA binding protein [Oryza sativa Japonica Group]
gi|108711961|gb|ABF99756.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|108711962|gb|ABF99757.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|108711963|gb|ABF99758.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|108711964|gb|ABF99759.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113550294|dbj|BAF13737.1| Os03g0836200 [Oryza sativa Japonica Group]
gi|125546344|gb|EAY92483.1| hypothetical protein OsI_14220 [Oryza sativa Indica Group]
gi|125588547|gb|EAZ29211.1| hypothetical protein OsJ_13272 [Oryza sativa Japonica Group]
gi|215695067|dbj|BAG90258.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215715212|dbj|BAG94963.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764998|dbj|BAG86695.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 205
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ DAF +FG +T+A ++ DK S+G+G VTF ++ + A+ MNG LDGR + VD
Sbjct: 23 LKDAFGKFGNLTEAKVVFDKYSGRSRGFGFVTFDEKKAMEDAIEGMNGLDLDGRAITVDK 82
Query: 62 VRP 64
+P
Sbjct: 83 AQP 85
>gi|20257691|gb|AAM16011.1| glycine-rich RNA binding protein [Zea mays]
Length = 155
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 43/63 (68%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS +G+V ++ II+D+ S+G+G VTFSTE+ + A+ MNGK LDGR + V+
Sbjct: 33 LNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKELDGRNITVNE 92
Query: 62 VRP 64
+
Sbjct: 93 AQS 95
>gi|20257667|gb|AAM15999.1| glycine-rich RNA binding protein [Zea mays]
gi|20257671|gb|AAM16001.1| glycine-rich RNA binding protein [Zea mays]
gi|20257677|gb|AAM16004.1| glycine-rich RNA binding protein [Zea mays]
gi|20257685|gb|AAM16008.1| glycine-rich RNA binding protein [Zea mays]
gi|20257703|gb|AAM16017.1| glycine-rich RNA binding protein [Zea mays]
gi|20257717|gb|AAM16024.1| glycine-rich RNA binding protein [Zea mays]
gi|20257719|gb|AAM16025.1| glycine-rich RNA binding protein [Zea mays]
Length = 154
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 43/63 (68%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS +G+V ++ II+D+ S+G+G VTFSTE+ + A+ MNGK LDGR + V+
Sbjct: 33 LNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKELDGRNITVNE 92
Query: 62 VRP 64
+
Sbjct: 93 AQS 95
>gi|378727388|gb|EHY53847.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 179
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 42/64 (65%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + FSQFG + +A ++ D+ N S+G+G V F+T+ EA +A+ MN DGR++ VD+
Sbjct: 18 LYEGFSQFGNIEEAVVVKDRDTNRSRGFGFVRFATKAEADEAMQRMNNTQFDGRLIRVDH 77
Query: 62 VRPS 65
+ S
Sbjct: 78 AQDS 81
>gi|297804934|ref|XP_002870351.1| hypothetical protein ARALYDRAFT_493528 [Arabidopsis lyrata subsp.
lyrata]
gi|297316187|gb|EFH46610.1| hypothetical protein ARALYDRAFT_493528 [Arabidopsis lyrata subsp.
lyrata]
Length = 154
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD--N 61
DAF+ FG+V A +I+D+ S+G+G V F+ E A A++EM+GK L+GR + V+ N
Sbjct: 53 DAFAHFGEVVDAKVIVDRETGRSRGFGFVNFNDEGAASAAISEMDGKDLNGRNIRVNVAN 112
Query: 62 VRPS 65
RPS
Sbjct: 113 ERPS 116
>gi|260221788|emb|CBA30701.1| Glycine-rich RNA-binding protein GRP1A [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 149
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ AFSQ G V+ A ++M++ SKG+G V ++ EAQ A++ MNG+ GR L V+
Sbjct: 25 LQQAFSQHGSVSSAKVMMERDTGRSKGFGFVEMGSDAEAQTAISAMNGQQFGGRGLVVNE 84
Query: 62 VRP 64
RP
Sbjct: 85 ARP 87
>gi|117619969|ref|YP_856326.1| RNA-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
gi|117561376|gb|ABK38324.1| RNA-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
Length = 95
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
FSQFGQV K II+D+ SKG+G + EA+KA+ ++G + GR + V+ +P
Sbjct: 24 FSQFGQVDKVDIIIDRDTGQSKGFGFIEMPVNGEAEKAIAGLHGTEIGGRTITVNQAKP- 82
Query: 66 RRYNTDVPLARLKIH 80
TD P R + H
Sbjct: 83 ---KTDAPRGRPQRH 94
>gi|294464377|gb|ADE77701.1| unknown [Picea sitchensis]
Length = 299
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 42/66 (63%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
++ + FS+ G + A I+ D+ S+G+G +TFST+ EA+ A+ +NGK L+GR + VD
Sbjct: 231 ILNEVFSEHGNLLDAKIVFDRETGRSRGFGFITFSTQSEAEAAVASLNGKELEGRAMRVD 290
Query: 61 NVRPSR 66
SR
Sbjct: 291 LALSSR 296
>gi|121604834|ref|YP_982163.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans
CJ2]
gi|120593803|gb|ABM37242.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans
CJ2]
Length = 132
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +F QFG VT A ++M++ SKG+G V ++ EAQ A+ MNG+ L GR + V+
Sbjct: 19 LQQSFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIAGMNGQSLGGRSITVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|403169799|ref|XP_003329214.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168425|gb|EFP84795.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 804
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F+ FG +T ++ D+ K TSKG+G V FS+ +EA KA+ EMNGK+L + L+V
Sbjct: 473 LQNEFTPFGTITSCKVMKDE-KGTSKGFGFVCFSSPDEATKAVAEMNGKMLGSKPLYV 529
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D F+ FG + + D+ SKGYG V + T E A+ A+ +NG L+ +V+FV
Sbjct: 277 LHDTFAAFGDILSCKVATDE-HGASKGYGFVHYVTGESAEAAIKGVNGMQLNDKVVFVGI 335
Query: 62 VRPSR 66
P R
Sbjct: 336 HVPRR 340
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 4 DAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV 62
+ F +FG +T A + D+ GK+ +G+G V + E A KA+ ++ K G VL+V
Sbjct: 372 EVFGKFGPITSAAVQSDEHGKH--RGFGFVNYENHESASKAVDALHDKDYKGNVLYV--A 427
Query: 63 RPSRRYNTDVPLAR 76
R +R D L +
Sbjct: 428 RAQKRTERDAELKK 441
>gi|327301915|ref|XP_003235650.1| glycine-rich RNA-binding protein [Trichophyton rubrum CBS 118892]
gi|326463002|gb|EGD88455.1| glycine-rich RNA-binding protein [Trichophyton rubrum CBS 118892]
Length = 149
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 39/59 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ + FS+FG + +A ++ D+ N S+G+G V FS++ EA AL MN + DGRV+ VD
Sbjct: 20 LREGFSKFGTIEEAIVVKDRDTNRSRGFGFVRFSSDSEADAALNAMNNQEFDGRVIRVD 78
>gi|121705230|ref|XP_001270878.1| glycine-rich RNA-binding protein, putative [Aspergillus clavatus
NRRL 1]
gi|119399024|gb|EAW09452.1| glycine-rich RNA-binding protein, putative [Aspergillus clavatus
NRRL 1]
Length = 133
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
F QFGQV +A ++ D+ N S+G+G V FS++ +A KA+ MN + DGR + VD
Sbjct: 21 GFEQFGQVEEAIVVKDRDTNRSRGFGFVRFSSDSDADKAMDAMNNQEFDGRTIRVD 76
>gi|363894957|gb|AEW42987.1| putative polyadenylate-binding protein 1, partial [Haliotis
diversicolor]
Length = 563
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FSQFG +T A ++ + G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 315 FSQFGTITSARVMSEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIIVSKPLYV 366
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + I D+ N SKGYG V F TEE A++A+ ++NG LL+G+ ++V
Sbjct: 115 LYDTFSAFGNILSCKIASDE--NGSKGYGFVHFETEEAARQAIEKVNGMLLNGKKVYVGK 172
Query: 62 VRPSR 66
P +
Sbjct: 173 FIPRK 177
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNG-KLLDGRVLFV 59
I + F FG++ A ++ D+ GK S+G+G V++ E A+KA+ +NG +L G+VL+
Sbjct: 207 IRELFDPFGKIISAKVMTDEIGK--SRGFGFVSYEEPEAAEKAVDNLNGMELGGGKVLYA 264
>gi|344236474|gb|EGV92577.1| Polyadenylate-binding protein 4 [Cricetulus griseus]
Length = 524
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 305 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 356
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 106 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 161
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+ +FV
Sbjct: 198 LKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFV 254
>gi|195626882|gb|ACG35271.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 203
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 43/63 (68%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS +G+V ++ II+D+ S+G+G VTFSTE+ + A+ MNGK LDGR + V+
Sbjct: 81 LNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKELDGRNITVNE 140
Query: 62 VRP 64
+
Sbjct: 141 AQS 143
>gi|20257683|gb|AAM16007.1| glycine-rich RNA binding protein [Zea mays]
Length = 155
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 43/63 (68%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS +G+V ++ II+D+ S+G+G VTFSTE+ + A+ MNGK LDGR + V+
Sbjct: 33 LNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKELDGRNITVNE 92
Query: 62 VRP 64
+
Sbjct: 93 AQS 95
>gi|194336480|ref|YP_002018274.1| RNP-1 like RNA-binding protein [Pelodictyon phaeoclathratiforme
BU-1]
gi|194308957|gb|ACF43657.1| RNP-1 like RNA-binding protein [Pelodictyon phaeoclathratiforme
BU-1]
Length = 95
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 40/60 (66%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
DAFS+FG+V A+II DK SKG+G V + EA++A+ MNGK L+GR + V+ +
Sbjct: 19 DAFSEFGEVANASIINDKFSGRSKGFGFVEMPKDSEAREAIESMNGKDLNGRTVTVNEAK 78
>gi|423196273|ref|ZP_17182856.1| hypothetical protein HMPREF1171_00888 [Aeromonas hydrophila SSU]
gi|404632497|gb|EKB29102.1| hypothetical protein HMPREF1171_00888 [Aeromonas hydrophila SSU]
Length = 92
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
FSQFGQV K II+D+ SKG+G + EA+KA+ ++G + GR + V+ +P
Sbjct: 21 FSQFGQVDKVDIIIDRDTGQSKGFGFIEMPVNGEAEKAIAGLHGTEIGGRTITVNQAKP- 79
Query: 66 RRYNTDVPLARLKIH 80
TD P R + H
Sbjct: 80 ---KTDAPRGRPQRH 91
>gi|359478318|ref|XP_003632106.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Vitis vinifera]
gi|296084274|emb|CBI24662.3| unnamed protein product [Vitis vinifera]
Length = 108
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 38/55 (69%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
++ DAF Q+G++ + +I D SKGYG V F+++++A AL EM+G+ LDGR
Sbjct: 44 ILKDAFGQYGEIIEVKVICDHVSGKSKGYGFVQFTSDDDAHIALKEMDGQSLDGR 98
>gi|408398205|gb|EKJ77338.1| hypothetical protein FPSE_02416 [Fusarium pseudograminearum
CS3096]
Length = 128
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 43/62 (69%), Gaps = 2/62 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD--NVR 63
FS+FG+VT + I+ D+ ++G+G VTFSTEE+A A+ +N + LDGR + V+ N R
Sbjct: 22 FSEFGEVTDSIIMRDRETGRARGFGFVTFSTEEQANAAVDALNEQELDGRRIRVNVANAR 81
Query: 64 PS 65
P+
Sbjct: 82 PA 83
>gi|388511641|gb|AFK43882.1| unknown [Lotus japonicus]
Length = 211
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 42/63 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ DAF +FG++T+A +++DK S+G+G VTF ++ +A+ MNG LDGR + VD
Sbjct: 23 LKDAFEKFGKLTEAKVVVDKFSGRSRGFGFVTFDDKKAMDEAIDAMNGMDLDGRTITVDK 82
Query: 62 VRP 64
+P
Sbjct: 83 AQP 85
>gi|194044632|ref|XP_001927442.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Sus scrofa]
Length = 610
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FSQFG++ ++ D + S+G+G V F E+AQKA+T+MNGK + GR+L+V
Sbjct: 207 LQDLFSQFGKILSVKVMRDDSGH-SRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYV 263
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F+ +G +T A ++ + G SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FAPYGMITSAKVMTEGGH--SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 365
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + ++ D + S+G+G V F T E AQ A+ MNG LL+ R +FV +
Sbjct: 115 LYDTFSTFGNILSCKVVCDD--HGSRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGH 172
Query: 62 VRPSRR 67
+ SRR
Sbjct: 173 FK-SRR 177
>gi|189499100|ref|YP_001958570.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides BS1]
gi|189494541|gb|ACE03089.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides BS1]
Length = 90
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
++DAF+QFGQV +A IIMDK SKG+G V ++EAQ A+ ++ L+GR + V+
Sbjct: 17 LSDAFAQFGQVDRANIIMDKETGRSKGFGFVEMPNDDEAQNAIDSLHDSDLNGRSIKVN 75
>gi|82802755|gb|ABB92428.1| PABP3 [Pongo pygmaeus]
Length = 635
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 40/55 (72%), Gaps = 2/55 (3%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
AFS FG +T A ++M+ G+ S+G+G V FS+ EEA KA+TEMNG ++ + L+V
Sbjct: 313 AFSPFGTITSAKVMMEGGR--SRGFGFVCFSSPEEATKAVTEMNGIIVATKPLYV 365
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D S FG + ++ D+ N SKGYG V F T E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTVSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV 170
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L G+ ++V
Sbjct: 207 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYV 263
>gi|357457429|ref|XP_003598995.1| 28 kDa ribonucleoprotein [Medicago truncatula]
gi|355488043|gb|AES69246.1| 28 kDa ribonucleoprotein [Medicago truncatula]
Length = 447
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 45/65 (69%), Gaps = 2/65 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD- 60
++DAFS++GQV A IIMD+ SKG+G VT++T EEA A+ ++G+ L GR + V+
Sbjct: 60 LSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQALDGQDLYGRRVGVNF 119
Query: 61 -NVRP 64
N RP
Sbjct: 120 ANERP 124
>gi|406944721|gb|EKD76419.1| hypothetical protein ACD_43C00118G0001 [uncultured bacterium]
Length = 84
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 38/64 (59%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
+AF Q G V A IIMDK S+G+G V ST EEAQ A+ +GK LDGR + V +
Sbjct: 21 EAFMQAGNVVSAKIIMDKMTGRSRGFGFVEMSTPEEAQAAIQMWDGKELDGRRIAVKEAQ 80
Query: 64 PSRR 67
P +
Sbjct: 81 PREK 84
>gi|328713207|ref|XP_001947071.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++MD G+ SKG+G V FS+ EEA KA+T+MNG+++ + L+V
Sbjct: 307 FSVFGTITSAKVMMDDGR--SKGFGFVCFSSPEEATKAVTDMNGRIVGTKPLYV 358
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
D FS FG + + D+ SKGYG V F E+ A +++ ++NG LL+G+ +FV
Sbjct: 108 DTFSAFGNILSCKVAQDE-TGQSKGYGFVHFEMEQSATQSIEKVNGMLLNGKKVFV 162
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGK-LLDGRVLFV 59
+ F ++G +T + +M + +S+G+G V F EEA+KA+TE++GK +G+ +V
Sbjct: 201 EMFEKYGSIT-SFKVMFRDDGSSRGFGFVAFEDPEEAEKAVTELHGKESPEGKTYYV 256
>gi|388492070|gb|AFK34101.1| unknown [Lotus japonicus]
Length = 211
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 42/63 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ DAF +FG++T+A +++DK S+G+G VTF ++ +A+ MNG LDGR + VD
Sbjct: 23 LKDAFEKFGKLTEAKVVVDKFSGRSRGFGFVTFDDKKAMDEAIDAMNGMDLDGRTITVDK 82
Query: 62 VRP 64
+P
Sbjct: 83 TQP 85
>gi|162455692|ref|YP_001618059.1| RNA recognition motif-containing protein [Sorangium cellulosum So
ce56]
gi|161166274|emb|CAN97579.1| RNA-binding region RNP-1 (RNA recognition motif) [Sorangium
cellulosum So ce56]
Length = 139
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ AF+Q G+VT I+ D+ S+G+G VT T E+AQ+A+ MNG ++DGR L V+
Sbjct: 19 VQAAFAQSGEVTDVHIVTDRESGQSRGFGFVTMGTPEQAQQAIENMNGAMMDGRPLRVN 77
>gi|47229361|emb|CAF99349.1| unnamed protein product [Tetraodon nigroviridis]
Length = 380
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 83 FSPFGTITSAKVMLEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 134
>gi|30692254|ref|NP_849523.1| glycine-rich RNA-binding protein 8 [Arabidopsis thaliana]
gi|332661645|gb|AEE87045.1| glycine-rich RNA-binding protein 8 [Arabidopsis thaliana]
Length = 126
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
FSQFG V + II D+ S+G+G VTF E+ + A+ EMNGK LDGRV+ V+ +
Sbjct: 26 FSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQ 83
>gi|15235002|ref|NP_195637.1| glycine-rich RNA-binding protein 8 [Arabidopsis thaliana]
gi|544425|sp|Q03251.1|GRP8_ARATH RecName: Full=Glycine-rich RNA-binding protein 8; AltName:
Full=Protein CCR1
gi|16305|emb|CAA78712.1| glycine rich protein [Arabidopsis thaliana]
gi|166658|gb|AAA20201.1| ORF [Arabidopsis thaliana]
gi|166839|gb|AAA32854.1| RNA-binding protein [Arabidopsis thaliana]
gi|4914438|emb|CAB43641.1| glycine-rich protein (clone AtGRP8) [Arabidopsis thaliana]
gi|7270909|emb|CAB80589.1| glycine-rich protein (clone AtGRP8) [Arabidopsis thaliana]
gi|222423067|dbj|BAH19515.1| AT4G39260 [Arabidopsis thaliana]
gi|332661644|gb|AEE87044.1| glycine-rich RNA-binding protein 8 [Arabidopsis thaliana]
Length = 169
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
FSQFG V + II D+ S+G+G VTF E+ + A+ EMNGK LDGRV+ V+ +
Sbjct: 26 FSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQ 83
>gi|66800163|ref|XP_629007.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|74996426|sp|Q54BM2.1|PAP1A_DICDI RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein, cytoplasmic 1-A
gi|60462370|gb|EAL60591.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 565
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 40/58 (68%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG +T A ++ D TSKG+G V ++ +EA +A+TEMNG+++ + L+V
Sbjct: 300 LREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYV 357
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + ++ D G N+SKG+G V + T+E A KA+ ++NG +++G+ +FV
Sbjct: 114 LYDTFSAFGNILSCKVVTDDG-NSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGP 172
Query: 62 VRPSR 66
+ S+
Sbjct: 173 FKSSK 177
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 2 IADAFSQFGQVTKATIIMD-KGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + Q+G++T TI+ D KGK SKG+G F + E A+ + NGK+ G+ ++
Sbjct: 204 LKELLQQYGEITNITIMADDKGK--SKGFGFANFESAEAAKNVVENENGKIFHGKPIYA 260
>gi|395545876|ref|XP_003774823.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 621
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G S+G+G V FS +EA KA+TEMNGKL+ + L+V
Sbjct: 305 FSPFGTITSAKVMMEGGH--SRGFGFVCFSAPDEAAKAVTEMNGKLVTSKPLYV 356
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F +FG+ ++ D+ + SKG+G V+++T E+AQ+A+ EMNGK L+GR ++V
Sbjct: 198 LGEIFGRFGRALSVKVMTDE-RGRSKGFGFVSYATHEDAQRAVDEMNGKELNGRRIYV 254
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
DAFS FG + ++ D+ N SKGYG V F T+E A+KA+ +MNG +L +FV + +
Sbjct: 108 DAFSGFGNILSCKVVSDE--NGSKGYGFVHFETQESAEKAIEKMNGIVLKSLKVFVGHFK 165
>gi|296422065|ref|XP_002840583.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636802|emb|CAZ84774.1| unnamed protein product [Tuber melanosporum]
Length = 559
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ + F QFG++ ++ D+ SKG+G V ++T E A+KAL EM GK +DGR + VD
Sbjct: 317 WLRNEFEQFGEIAAVRVVTDRESGRSKGFGYVEYTTNEAAKKALEEMKGKDIDGRTINVD 376
Query: 61 NVRP 64
P
Sbjct: 377 FSAP 380
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
++ F FG + I D KG+ + + + A+KA+ EMNG L+ GR + D
Sbjct: 417 IVQTEFEGFGNIVGLRIPTDPESGQPKGFCYIQYDRVDSARKAVEEMNGALVAGRAIRTD 476
>gi|410953832|ref|XP_003983574.1| PREDICTED: polyadenylate-binding protein 1-like [Felis catus]
Length = 616
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FSQFG++ ++ D + S+G+G V F EEAQKA+T+MNGK + GR+L+V
Sbjct: 207 LQDLFSQFGKMLSVKVMRDDSGH-SRGFGFVNFEKHEEAQKAVTDMNGKEVRGRLLYV 263
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS +G +T A ++ + G SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPYGVITSAKVMTEGGH--SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 365
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + ++ D + S+G+G V F T E AQ+A+ MNG LL+ R +FV +
Sbjct: 115 LYDTFSTFGNILSCKVVCDN--HGSRGFGFVHFETHEAAQQAIVTMNGMLLNDRKVFVGH 172
Query: 62 VRPSRR 67
+ SRR
Sbjct: 173 FK-SRR 177
>gi|409044525|gb|EKM54006.1| hypothetical protein PHACADRAFT_257571 [Phanerochaete carnosa
HHB-10118-sp]
Length = 155
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 39/56 (69%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
AFSQFGQ+ + ++ D+ S+G+G VTFS+ EAQ A+T +N + LDGR + V+
Sbjct: 22 AFSQFGQILDSIVMRDRDTGRSRGFGFVTFSSANEAQTAITSLNEQELDGRRIRVN 77
>gi|170044609|ref|XP_001849934.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
gi|167867688|gb|EDS31071.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
Length = 628
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A +++++G+ SKG+G V FS EEA KA+TEMNG+++ + L+V
Sbjct: 306 FSPFGTITSAKVMLEEGR--SKGFGFVCFSAAEEATKAVTEMNGRIVGSKPLYV 357
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + + D+ K SKGYG V F TEE A ++ ++NG LL+ + +FV
Sbjct: 108 DTFSAFGNILSCKVAQDE-KGNSKGYGFVHFETEESANTSIEKVNGMLLNAKKVFVGRFI 166
Query: 64 PSR 66
P +
Sbjct: 167 PRK 169
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLL-DGRVLFV 59
+ + F ++G +T +++ + N S+G+G V F E A+ A+ E+NGK L DG+VL+V
Sbjct: 199 LKEMFEKYGTITSHRVMIKE--NKSRGFGFVAFENPESAEVAVQELNGKELGDGKVLYV 255
>gi|323448756|gb|EGB04650.1| hypothetical protein AURANDRAFT_55048 [Aureococcus anophagefferens]
Length = 604
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 39/54 (72%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F+++G +T A ++ + TS+G+G V FS+ EEA KA+TEMN KL+ G+ +FV
Sbjct: 320 FAEYGTITSARVMREPATGTSRGFGFVCFSSPEEAAKAVTEMNNKLVLGKPIFV 373
>gi|319765042|ref|YP_004128979.1| rnp-1 like RNA-binding protein [Alicycliphilus denitrificans BC]
gi|330827234|ref|YP_004390537.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans
K601]
gi|317119603|gb|ADV02092.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans BC]
gi|329312606|gb|AEB87021.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans
K601]
Length = 144
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ AF QFG VT A ++M++ SKG+G V ++ +AQ A+ MNG+ L GR + V+
Sbjct: 19 LEQAFGQFGVVTSAKVMMERDTGRSKGFGFVEMGSDADAQAAINGMNGQSLGGRSIVVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|119612222|gb|EAW91816.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
gi|119612227|gb|EAW91821.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
Length = 419
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|449550007|gb|EMD40972.1| hypothetical protein CERSUDRAFT_111545 [Ceriporiopsis subvermispora
B]
Length = 286
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/57 (47%), Positives = 40/57 (70%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
D FS+FG+V K TI+ D+ + S+G+G +T ST EEA + + E+NG L+GR + VD
Sbjct: 97 DEFSRFGRVDKVTIVYDQRSDRSRGFGFITMSTTEEAGRCIKELNGVELNGRRIRVD 153
>gi|326474784|gb|EGD98793.1| glycine-rich RNA-binding protein [Trichophyton tonsurans CBS
112818]
Length = 149
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 39/59 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ + FS+FG + +A ++ D+ N S+G+G V FS++ EA AL MN + DGRV+ VD
Sbjct: 20 LREGFSKFGTIEEAIVVKDRDTNRSRGFGFVRFSSDSEADAALNAMNNQEFDGRVIRVD 78
>gi|403169797|ref|XP_003889581.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375168424|gb|EHS63645.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 715
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F+ FG +T ++ D+ K TSKG+G V FS+ +EA KA+ EMNGK+L + L+V
Sbjct: 384 LQNEFTPFGTITSCKVMKDE-KGTSKGFGFVCFSSPDEATKAVAEMNGKMLGSKPLYV 440
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D F+ FG + + D+ SKGYG V + T E A+ A+ +NG L+ +V+FV
Sbjct: 188 LHDTFAAFGDILSCKVATDE-HGASKGYGFVHYVTGESAEAAIKGVNGMQLNDKVVFVGI 246
Query: 62 VRPSR 66
P R
Sbjct: 247 HVPRR 251
Score = 37.7 bits (86), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 4 DAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV 62
+ F +FG +T A + D+ GK+ +G+G V + E A KA+ ++ K G VL+V
Sbjct: 283 EVFGKFGPITSAAVQSDEHGKH--RGFGFVNYENHESASKAVDALHDKDYKGNVLYV--A 338
Query: 63 RPSRRYNTDVPLAR 76
R +R D L +
Sbjct: 339 RAQKRTERDAELKK 352
>gi|334312764|ref|XP_003339775.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
1-like [Monodelphis domestica]
Length = 614
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ +++D+ S+G+G V F EEAQKA++ MNGK L GRVL+V
Sbjct: 207 LQELFSQFGKTLSVKVMVDE-NGQSRGFGFVNFEKHEEAQKAVSNMNGKELGGRVLYV 263
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS +G +T A ++ + G SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPYGVITSAKVMTEGGH--SKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + ++ D+ N S+G+G V F T E A +A+ MNG LL+ R +FV +
Sbjct: 115 LYDTFSTFGNILSCKVVCDE--NGSRGFGFVHFETHEAANQAINTMNGMLLNDRKVFVGH 172
Query: 62 VR 63
+
Sbjct: 173 FK 174
>gi|354476610|ref|XP_003500517.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 637
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 39/54 (72%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A + M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 324 FSPFGTITSAKVTMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 375
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 42/66 (63%), Gaps = 3/66 (4%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + ++ D+ N SKGYG V F T+EEA++A+ +MNG L+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGR 172
Query: 62 VRPSRR 67
+ SRR
Sbjct: 173 FK-SRR 177
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS+FG ++ D+ SKG+G V+F E+A+KA+ EMNGK L+G+ ++V
Sbjct: 211 FSKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYV 263
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
M+ + FS G + + D+ S GY SV F E+A++AL MN ++ G+
Sbjct: 26 MLYEKFSSAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDTMNFDVIKGK 80
>gi|340719920|ref|XP_003398392.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
terrestris]
Length = 609
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F+ FG +T A ++M++G+ SKG+G V FS EEA KA+TEMNG+++ + L+V
Sbjct: 295 FAPFGTITSAKVMMEEGR--SKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 346
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
D FS FG + + D+ SKGYG V F TEE A K++ +NG LL+G+ LF +
Sbjct: 117 DTFSAFGNILSCKVAQDES-GVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKLFTN 172
Score = 38.5 bits (88), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 2 IADAFSQFGQVTKATI-IMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGK-LLDGRVLFV 59
+ + F ++G +T + I D GK S+G+G V F + A++A+ E+NGK + +G+ ++V
Sbjct: 187 LKEMFEKYGTITSHKVMIKDDGK--SRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYV 244
>gi|157125851|ref|XP_001654419.1| polyadenylate-binding protein [Aedes aegypti]
gi|157125853|ref|XP_001654420.1| polyadenylate-binding protein [Aedes aegypti]
gi|94468824|gb|ABF18261.1| polyadenylate-binding protein [Aedes aegypti]
gi|108873484|gb|EAT37709.1| AAEL010318-PB [Aedes aegypti]
gi|108873485|gb|EAT37710.1| AAEL010318-PA [Aedes aegypti]
Length = 628
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A +++++G+ SKG+G V FS EEA KA+TEMNG+++ + L+V
Sbjct: 306 FSPFGTITSAKVMLEEGR--SKGFGFVCFSAAEEATKAVTEMNGRIVGSKPLYV 357
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + + D+ K SKGYG V F TEE A ++ ++NG LL+G+ ++V
Sbjct: 108 DTFSAFGNILSCKVAQDE-KGNSKGYGFVHFETEESANTSIEKVNGMLLNGKKVYVGRFI 166
Query: 64 PSR 66
P +
Sbjct: 167 PRK 169
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLL-DGRVLFV 59
+ + F ++G +T +++ GK S+G+G V F E A+ A+ E+NGK L +G++L+V
Sbjct: 199 LKEMFEKYGTITSHRVMIKDGK--SRGFGFVAFENPESAEHAVQELNGKELGEGKILYV 255
>gi|365153971|ref|ZP_09350405.1| hypothetical protein HMPREF1019_01088 [Campylobacter sp. 10_1_50]
gi|158605004|gb|EAT99377.3| 31 kDa ribonucleoprotein, (RNA-binding proteinRNP-T) (RNA-binding
protein 1/2/3) (AtRBP33) (RNA-binding proteincp31)
[Campylobacter concisus 13826]
gi|363650683|gb|EHL89770.1| hypothetical protein HMPREF1019_01088 [Campylobacter sp. 10_1_50]
Length = 81
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AF+QFG+V +A I+ D+ + SKG+G V E QKA+ +N K L GR L V+
Sbjct: 17 LKEAFAQFGEVRRAKIVKDRETDRSKGFGFVEMDDANEGQKAIDALNEKELGGRTLRVNE 76
Query: 62 VRP 64
RP
Sbjct: 77 ARP 79
>gi|387861097|gb|AFK08578.1| glycine-rich RNA binding protein 2c [Camelina sativa]
gi|387861103|gb|AFK08581.1| glycine-rich RNA binding protein 2c [Camelina sativa]
Length = 158
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD--N 61
DAF+ FG+V A +I+D+ +G+G V FS E A A++EM+GK L+GR + V+ N
Sbjct: 54 DAFAHFGEVVDAKVIVDRETGRPRGFGFVNFSDETAASAAISEMDGKDLNGRNIRVNPAN 113
Query: 62 VRPS 65
RPS
Sbjct: 114 DRPS 117
>gi|157163899|ref|YP_001467322.1| HIT family protein [Campylobacter concisus 13826]
gi|416114611|ref|ZP_11593777.1| RNA-binding protein [Campylobacter concisus UNSWCD]
gi|384578134|gb|EIF07405.1| RNA-binding protein [Campylobacter concisus UNSWCD]
Length = 65
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AF+QFG+V +A I+ D+ + SKG+G V E QKA+ +N K L GR L V+
Sbjct: 1 MKEAFAQFGEVRRAKIVKDRETDRSKGFGFVEMDDANEGQKAIDALNEKELGGRTLRVNE 60
Query: 62 VRP 64
RP
Sbjct: 61 ARP 63
>gi|430741539|ref|YP_007200668.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
gi|430013259|gb|AGA24973.1| RRM domain-containing RNA-binding protein [Singulisphaera
acidiphila DSM 18658]
Length = 119
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 37/59 (62%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
FSQFG V A II+D+ N SKG+G V T+ +AQ A+ +NG DGR L V+ +P
Sbjct: 23 FSQFGTVQSAQIIVDRDTNRSKGFGFVEMDTDAQAQAAIQGLNGHDHDGRNLTVNEAKP 81
>gi|350408508|ref|XP_003488428.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
impatiens]
Length = 601
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F+ FG +T A ++M++G+ SKG+G V FS EEA KA+TEMNG+++ + L+V
Sbjct: 287 FAPFGTITSAKVMMEEGR--SKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 338
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV 62
D FS FG + + D+ SKGYG V F TEE A K++ +NG LL+G+ F +++
Sbjct: 117 DTFSAFGNILSCKVAQDES-GVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKNFGEDM 174
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 2 IADAFSQFGQVTKATI-IMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGK-LLDGRVLFV 59
+ D F ++G +T + I D GK S+G+G V F + A++A+ E+NGK + +G+ ++V
Sbjct: 179 LKDMFEKYGTITSHKVMIKDDGK--SRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYV 236
>gi|255565552|ref|XP_002523766.1| dc50, putative [Ricinus communis]
gi|223536978|gb|EEF38615.1| dc50, putative [Ricinus communis]
Length = 210
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 42/63 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AF +FG + +A +++DK S+G+G VTF ++ ++A+ EMNG LDGR + VD
Sbjct: 23 LKEAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKAMEEAIEEMNGMDLDGRTITVDK 82
Query: 62 VRP 64
+P
Sbjct: 83 AQP 85
>gi|157818977|ref|NP_001099678.1| poly(A) binding protein, cytoplasmic 6 [Rattus norvegicus]
gi|149027506|gb|EDL83096.1| similar to RIKEN cDNA 4932702K14 (predicted) [Rattus norvegicus]
gi|197246058|gb|AAI68959.1| Poly(A) binding protein, cytoplasmic 3 [Rattus norvegicus]
Length = 643
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 39/54 (72%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A + M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 324 FSPFGTITSAKVTMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 375
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 42/66 (63%), Gaps = 3/66 (4%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + ++ D+ N SKGYG V F T+EEA++A+ +MNG L+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGR 172
Query: 62 VRPSRR 67
+ SRR
Sbjct: 173 FK-SRR 177
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS+FG ++ D+ SKG+G V+F E+A+KA+ EMNGK L+G+ ++V
Sbjct: 207 LQDLFSRFGPALSVKVMTDES-GKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYV 263
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
M+ + FS G + + D+ S GY SV F E+A++AL MN ++ G+
Sbjct: 26 MLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDTMNFDVIKGK 80
>gi|292490317|ref|YP_003525756.1| RNP-1 like RNA-binding protein [Nitrosococcus halophilus Nc4]
gi|291578912|gb|ADE13369.1| RNP-1 like RNA-binding protein [Nitrosococcus halophilus Nc4]
Length = 97
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 39/60 (65%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AF +G+V+ A +I+DK N SKG+G V + +E+A+ A+ EMN L GR + V+ RP
Sbjct: 20 AFENYGEVSSAKVIVDKFSNRSKGFGFVEMARQEDAETAIKEMNDSDLKGRQIVVNQARP 79
>gi|46139099|ref|XP_391240.1| hypothetical protein FG11064.1 [Gibberella zeae PH-1]
Length = 127
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 43/62 (69%), Gaps = 2/62 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD--NVR 63
FS+FG+VT + I+ D+ ++G+G VTFSTEE+A A+ +N + LDGR + V+ N R
Sbjct: 22 FSEFGEVTDSIIMRDRDTGRARGFGFVTFSTEEQATAAVDALNEQELDGRRIRVNVANAR 81
Query: 64 PS 65
P+
Sbjct: 82 PA 83
>gi|395526571|ref|XP_003765434.1| PREDICTED: polyadenylate-binding protein 4 [Sarcophilus harrisii]
Length = 630
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ +EA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYV 365
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T++ A +A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV 170
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS++G+ ++ D SKG+G V+F E+A KA+ EMNGK ++G+++FV
Sbjct: 207 LKELFSKYGKTLSVKVMTDSS-GKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFV 263
>gi|357451851|ref|XP_003596202.1| RNA-binding protein with serine-rich domain-containing protein
[Medicago truncatula]
gi|355485250|gb|AES66453.1| RNA-binding protein with serine-rich domain-containing protein
[Medicago truncatula]
Length = 415
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 41/74 (55%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + FS FG+V ++MD+ N KGYG V F T EA+KAL M+G +DG V+
Sbjct: 116 LKEIFSNFGEVVSVELVMDRAVNLPKGYGYVHFKTRGEAEKALLYMDGAQIDGNVVKARF 175
Query: 62 VRPSRRYNTDVPLA 75
P R+ + P A
Sbjct: 176 TLPPRQKASPPPKA 189
>gi|302809382|ref|XP_002986384.1| hypothetical protein SELMODRAFT_49298 [Selaginella
moellendorffii]
gi|300145920|gb|EFJ12593.1| hypothetical protein SELMODRAFT_49298 [Selaginella
moellendorffii]
Length = 145
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ DAFS +G V +A +++D+ S+G+G VTF E Q A+ M+GK LDGR + V
Sbjct: 18 LEDAFSPYGTVIEAKVVLDRDTERSRGFGFVTFGDENSMQDAIDGMHGKDLDGRSITVSK 77
Query: 62 VRP 64
+P
Sbjct: 78 AQP 80
>gi|30692256|ref|NP_849524.1| glycine-rich RNA-binding protein 8 [Arabidopsis thaliana]
gi|332661646|gb|AEE87046.1| glycine-rich RNA-binding protein 8 [Arabidopsis thaliana]
Length = 92
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 38/59 (64%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
FSQFG V + II D+ S+G+G VTF E+ + A+ EMNGK LDGRV+ V+ +
Sbjct: 26 FSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQS 84
>gi|340719924|ref|XP_003398394.1| PREDICTED: polyadenylate-binding protein 1-like isoform 4 [Bombus
terrestris]
Length = 612
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F+ FG +T A ++M++G+ SKG+G V FS EEA KA+TEMNG+++ + L+V
Sbjct: 316 FAPFGTITSAKVMMEEGR--SKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 367
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + + D+ SKGYG V F TEE A K++ +NG LL+G+ ++V
Sbjct: 117 DTFSAFGNILSCKVAQDES-GVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFI 175
Query: 64 PSR 66
P +
Sbjct: 176 PRK 178
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 2 IADAFSQFGQVTKATI-IMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGK-LLDGRVLFV 59
+ + F ++G +T + I D GK S+G+G V F + A++A+ E+NGK + +G+ ++V
Sbjct: 208 LKEMFEKYGTITSHKVMIKDDGK--SRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYV 265
>gi|328782034|ref|XP_396057.4| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Apis
mellifera]
Length = 601
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F+ FG +T A ++M++G+ SKG+G V FS EEA KA+TEMNG+++ + L+V
Sbjct: 287 FAPFGTITSAKVMMEEGR--SKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 338
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV 62
D FS FG + + D+ SKGYG V F TEE A K++ +NG LL+G+ F +++
Sbjct: 117 DTFSAFGNILSCKVAQDES-GVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKNFGEDM 174
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 2 IADAFSQFGQVTKATI-IMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGK-LLDGRVLFV 59
+ + F ++G +T + I D GK S+G+G V F + A++A+ E+NGK + +G+ ++V
Sbjct: 179 LKEMFEKYGTITSHKVMIKDDGK--SRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYV 236
>gi|126320658|ref|XP_001364500.1| PREDICTED: polyadenylate-binding protein 4-like [Monodelphis
domestica]
Length = 630
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ +EA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYV 365
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T++ A +A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV 170
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS++G+ ++ D SKG+G V+F E+A KA+ EMNGK ++G+++FV
Sbjct: 207 LKELFSKYGKTLSVKVMTDPS-GKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFV 263
>gi|260815191|ref|XP_002602357.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
gi|229287666|gb|EEN58369.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
Length = 620
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FSQFG +T + ++ + G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 317 FSQFGTITSSKVMTENGR--SKGFGFVCFSSPEEATKAVTEMNGRIVVSKPLYV 368
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
I D FS FG + + D+ +SKG+G V F T+E A +A+ ++NG +L+G+ ++V
Sbjct: 116 IYDTFSAFGNILSCKVAQDE-TGSSKGFGFVHFETQEAADEAMAKVNGMMLNGKKVYVGR 174
Query: 62 VRP 64
P
Sbjct: 175 FVP 177
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNG-KLLDGRVLFV 59
+ D F ++G+V A ++ D S+G+G V++ + A KA EMN ++ DGR ++V
Sbjct: 209 LRDFFEKYGKVVSAKVMTDD-MGHSRGFGFVSYEEPDSAGKACEEMNDMEVDDGRRIYV 266
>gi|340719918|ref|XP_003398391.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
terrestris]
Length = 630
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F+ FG +T A ++M++G+ SKG+G V FS EEA KA+TEMNG+++ + L+V
Sbjct: 316 FAPFGTITSAKVMMEEGR--SKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 367
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + + D+ SKGYG V F TEE A K++ +NG LL+G+ ++V
Sbjct: 117 DTFSAFGNILSCKVAQDES-GVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFI 175
Query: 64 PSR 66
P +
Sbjct: 176 PRK 178
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 2 IADAFSQFGQVTKATI-IMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGK-LLDGRVLFV 59
+ + F ++G +T + I D GK S+G+G V F + A++A+ E+NGK + +G+ ++V
Sbjct: 208 LKEMFEKYGTITSHKVMIKDDGK--SRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYV 265
>gi|126330207|ref|XP_001365338.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Monodelphis
domestica]
Length = 614
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ +EA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYV 365
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T++ A +A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV 170
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS++G+ ++ D SKG+G V+F E+A KA+ EMNGK ++G+++FV
Sbjct: 207 LKELFSKYGKTLSVKVMTDPS-GKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFV 263
>gi|350408504|ref|XP_003488426.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
impatiens]
Length = 630
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F+ FG +T A ++M++G+ SKG+G V FS EEA KA+TEMNG+++ + L+V
Sbjct: 316 FAPFGTITSAKVMMEEGR--SKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 367
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + + D+ SKGYG V F TEE A K++ +NG LL+G+ ++V
Sbjct: 117 DTFSAFGNILSCKVAQDES-GVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFI 175
Query: 64 PSR 66
P +
Sbjct: 176 PRK 178
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 2 IADAFSQFGQVTKATI-IMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGK-LLDGRVLFV 59
+ D F ++G +T + I D GK S+G+G V F + A++A+ E+NGK + +G+ ++V
Sbjct: 208 LKDMFEKYGTITSHKVMIKDDGK--SRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYV 265
>gi|126330205|ref|XP_001365269.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Monodelphis
domestica]
Length = 630
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ +EA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYV 365
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T++ A +A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV 170
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS++G+ ++ D SKG+G V+F E+A KA+ EMNGK ++G+++FV
Sbjct: 207 LKELFSKYGKTLSVKVMTDPS-GKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFV 263
>gi|380019828|ref|XP_003693803.1| PREDICTED: polyadenylate-binding protein 1-like [Apis florea]
Length = 630
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F+ FG +T A ++M++G+ SKG+G V FS EEA KA+TEMNG+++ + L+V
Sbjct: 316 FAPFGTITSAKVMMEEGR--SKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 367
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + + D+ SKGYG V F TEE A K++ +NG LL+G+ ++V
Sbjct: 117 DTFSAFGNILSCKVAQDES-GVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFI 175
Query: 64 PSR 66
P +
Sbjct: 176 PRK 178
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 2 IADAFSQFGQVTKATI-IMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGK-LLDGRVLFV 59
+ + F ++G +T + I D GK S+G+G V F + A++A+ E+NGK + +G+ ++V
Sbjct: 208 LKEMFEKYGTITSHKVMIKDDGK--SRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYV 265
>gi|350408506|ref|XP_003488427.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
impatiens]
Length = 621
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F+ FG +T A ++M++G+ SKG+G V FS EEA KA+TEMNG+++ + L+V
Sbjct: 316 FAPFGTITSAKVMMEEGR--SKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 367
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + + D+ SKGYG V F TEE A K++ +NG LL+G+ ++V
Sbjct: 117 DTFSAFGNILSCKVAQDES-GVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFI 175
Query: 64 PSR 66
P +
Sbjct: 176 PRK 178
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 2 IADAFSQFGQVTKATI-IMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGK-LLDGRVLFV 59
+ D F ++G +T + I D GK S+G+G V F + A++A+ E+NGK + +G+ ++V
Sbjct: 208 LKDMFEKYGTITSHKVMIKDDGK--SRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYV 265
>gi|344228406|gb|EGV60292.1| hypothetical protein CANTEDRAFT_136776 [Candida tenuis ATCC 10573]
Length = 647
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 42/58 (72%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F FG +T A +++D+ + SKG+G V FS+ EEA KA+TEMN ++++G+ L+V
Sbjct: 351 LENEFKPFGNITSARVMVDE-QGKSKGFGFVCFSSPEEATKAITEMNQRMVEGKPLYV 407
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 2 IADAFSQFGQVTKATIIMD-KGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ + FS +G +T + + D +GK SKG+G V F +A KA+ E+N K + G+ ++V
Sbjct: 248 LKELFSAYGPITSSYLEKDLEGK--SKGFGFVNFDNHNDAVKAVDELNNKEIAGQPIYVG 305
Query: 61 NVRPSR 66
+ R
Sbjct: 306 RAQKKR 311
>gi|425781282|gb|EKV19258.1| hypothetical protein PDIG_04180 [Penicillium digitatum PHI26]
gi|425783364|gb|EKV21218.1| hypothetical protein PDIP_08850 [Penicillium digitatum Pd1]
Length = 162
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + F QFG++ +A ++ D+ S+G+G V F+T+ EA AL MN + DGRV+ VD
Sbjct: 18 LREGFQQFGEIQEAIVVKDRATLRSRGFGFVRFATDAEADSALGAMNNQEFDGRVIRVDK 77
Query: 62 V--RPSR 66
RP R
Sbjct: 78 AFDRPQR 84
>gi|340719922|ref|XP_003398393.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
terrestris]
Length = 621
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F+ FG +T A ++M++G+ SKG+G V FS EEA KA+TEMNG+++ + L+V
Sbjct: 316 FAPFGTITSAKVMMEEGR--SKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 367
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + + D+ SKGYG V F TEE A K++ +NG LL+G+ ++V
Sbjct: 117 DTFSAFGNILSCKVAQDES-GVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFI 175
Query: 64 PSR 66
P +
Sbjct: 176 PRK 178
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 2 IADAFSQFGQVTKATI-IMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGK-LLDGRVLFV 59
+ + F ++G +T + I D GK S+G+G V F + A++A+ E+NGK + +G+ ++V
Sbjct: 208 LKEMFEKYGTITSHKVMIKDDGK--SRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYV 265
>gi|90265701|dbj|BAE91897.1| glycine-rich RNA-binding protein [Lolium perenne]
Length = 107
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 39/59 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ AFSQFG++T II D+ S+G+G VTFS+ E + A+ MNG+ LDGR + V+
Sbjct: 21 LEQAFSQFGEITDCKIINDRETGRSRGFGFVTFSSSESMKNAIEGMNGQDLDGRNITVN 79
>gi|344257059|gb|EGW13163.1| Polyadenylate-binding protein 1 [Cricetulus griseus]
Length = 565
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 39/54 (72%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + +V
Sbjct: 243 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPFYV 294
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 44 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 99
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 136 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 192
>gi|301606181|ref|XP_002932728.1| PREDICTED: polyadenylate-binding protein 1-B-like [Xenopus
(Silurana) tropicalis]
Length = 447
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 39/54 (72%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F+ FG +T A ++ + G+ SKG+G V FST EA+KAL+EMNGK+L + L+V
Sbjct: 154 FAPFGTITSAKVMREGGR--SKGFGFVCFSTPAEARKALSEMNGKILASKPLYV 205
>gi|259486065|tpe|CBF83611.1| TPA: glycine-rich RNA-binding protein, putative (AFU_orthologue;
AFUA_3G08580) [Aspergillus nidulans FGSC A4]
Length = 128
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
++ + FS++G + +A ++ D+ N S+G+G V F++E EA A+ MN + DGR++ VD
Sbjct: 17 VLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGAMNNQEFDGRIIRVD 76
Query: 61 NV--RPSRR 67
RP+ R
Sbjct: 77 KASERPAAR 85
>gi|302814001|ref|XP_002988685.1| hypothetical protein SELMODRAFT_18499 [Selaginella
moellendorffii]
gi|300143506|gb|EFJ10196.1| hypothetical protein SELMODRAFT_18499 [Selaginella
moellendorffii]
Length = 135
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ DAFS +G V +A +++D+ S+G+G VTF E Q A+ M+GK LDGR + V
Sbjct: 24 LEDAFSPYGTVIEAKVVLDRDTERSRGFGFVTFGDENSMQDAIDGMHGKDLDGRSITVSK 83
Query: 62 VRP 64
+P
Sbjct: 84 AQP 86
>gi|410910966|ref|XP_003968961.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 635
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMLEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Query: 2 IADAFSQFGQVTKATIIMD-KGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F+++G ++ D GK S+G+G V+F E+AQKA+ EMNGK ++G+ ++V
Sbjct: 207 LRDVFNKYGNAMSIRVMTDDSGK--SRGFGFVSFERHEDAQKAVDEMNGKEMNGKPIYV 263
>gi|405977322|gb|EKC41780.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 646
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F+QFG +T A ++ + G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 320 FAQFGTITSAKVMTEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVVAKPLYV 371
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + I+ D+ + S+GYG V F TEE A+ A+ ++NG LL+G+ +FV
Sbjct: 120 LYDTFSAFGNILSCKIVCDE--HGSRGYGFVHFETEEAARIAIEKVNGMLLNGKKVFVGR 177
Query: 62 VRPSRRYNTDV 72
SRR +V
Sbjct: 178 FM-SRRERLEV 187
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +G++ A ++ D G KG+G V+F E A+KA+ +NG G++L+V
Sbjct: 212 LRDMFEPYGKIISAKVMTDDGSGKGKGFGFVSFEDPEAAEKAVEALNGNDNSGKILYV 269
>gi|124806145|ref|XP_001350640.1| polyadenylate-binding protein, putative [Plasmodium falciparum 3D7]
gi|23496765|gb|AAN36320.1|AE014847_47 polyadenylate-binding protein, putative [Plasmodium falciparum 3D7]
gi|119352249|gb|ABL63812.1| polyadenylate-binding protein [Plasmodium falciparum]
Length = 875
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 43/59 (72%), Gaps = 1/59 (1%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
M+ + F FG +T A ++ D+ K SKG+G V F+++EEA KA+TEM+ K+++G+ L+V
Sbjct: 465 MLRELFEPFGTITSAKVMRDE-KEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPLYV 522
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 4 DAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN- 61
D FS FG + + D+ GK SK YG V + EE A++A+ ++NG L + ++V
Sbjct: 122 DTFSMFGNILSCKVATDEFGK--SKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPF 179
Query: 62 VRPSRRYNTDVPLARLKI 79
++ S R D L +
Sbjct: 180 IKKSERATNDTKFTNLYV 197
>gi|388493798|gb|AFK34965.1| unknown [Medicago truncatula]
Length = 185
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 40/61 (65%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
+AF +FG+V + ++ D+ SKG+G V ++T E+A K + M+GK L+G ++F + R
Sbjct: 62 EAFKKFGEVKQVRVVADRVSGYSKGFGYVRYATSEDAAKGIQGMDGKFLEGWIVFAEYAR 121
Query: 64 P 64
P
Sbjct: 122 P 122
>gi|354498761|ref|XP_003511482.1| PREDICTED: polyadenylate-binding protein 1-like, partial
[Cricetulus griseus]
Length = 571
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 39/54 (72%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + +V
Sbjct: 249 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPFYV 300
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 50 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 105
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 142 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 198
>gi|223973531|gb|ACN30953.1| unknown [Zea mays]
Length = 184
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 45/65 (69%), Gaps = 2/65 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD--N 61
+AFS FG+VT+A +I D+ S+G+G V +S + A++A++ M+GK +DGR + V+ N
Sbjct: 55 EAFSSFGEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAISAMDGKEIDGRQVRVNMAN 114
Query: 62 VRPSR 66
RP R
Sbjct: 115 ERPLR 119
>gi|197632397|gb|ACH70922.1| elongation factor-1 delta-1 [Salmo salar]
Length = 203
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 40/61 (65%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS++G + K ++ D+ S+G+G VTF E+A+ A+ MNGK +DGR++ VD
Sbjct: 21 LEEAFSKYGNIAKVDVVRDRETQRSRGFGFVTFENPEDAKDAMAAMNGKSVDGRMIRVDE 80
Query: 62 V 62
Sbjct: 81 A 81
>gi|116747535|ref|YP_844222.1| RNP-1 like RNA-binding protein [Syntrophobacter fumaroxidans
MPOB]
gi|116696599|gb|ABK15787.1| RNP-1 like RNA-binding protein [Syntrophobacter fumaroxidans
MPOB]
Length = 122
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 40/62 (64%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + FSQ G V AT++ D+ S+G+G V ST+EE QKA+ E+NGK +GR L V+
Sbjct: 19 LRELFSQVGTVESATVVEDRESGRSRGFGFVEMSTKEEGQKAIAELNGKDFNGRPLTVNE 78
Query: 62 VR 63
+
Sbjct: 79 AK 80
>gi|158516903|gb|ABW70168.1| putative glycine-rich RNA-binding protein 2 [Bambusa oldhamii]
Length = 162
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD- 60
+ DAF+ FG+V +A +I D+ S+G+G V+FS ++A+ A++ M+G+ L+GR + V+
Sbjct: 53 LKDAFTSFGEVVEARVITDRDTGKSRGFGFVSFSNGDDAKNAMSSMDGQELEGRNIHVNF 112
Query: 61 -NVRPS 65
N RP+
Sbjct: 113 ANERPA 118
>gi|405973173|gb|EKC37903.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 465
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 39/54 (72%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F+QFG +T A ++ + G+ SKG+G V FS+ EEA KA+ EMN K+++ R L+V
Sbjct: 314 FAQFGTITSAKVMTENGR--SKGFGFVYFSSPEEATKAIVEMNEKIIEARPLYV 365
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG ++ I+ D+ + S+GYG V F T+E A+ A+ ++NG LL+G+ +FV
Sbjct: 114 LYDTFSAFGNISSCKIVCDE--HGSRGYGFVHFETDEAARIAIEKVNGMLLNGKKVFV 169
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F +G++ A +++D SK +G V+F E A+KA+ +NG G++L+V
Sbjct: 206 LREIFELYGKIISAKVMIDDSSRKSKQFGFVSFENPEAAKKAVEALNGNDNAGKILYV 263
>gi|218193515|gb|EEC75942.1| hypothetical protein OsI_13038 [Oryza sativa Indica Group]
Length = 261
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ADAF +FG+V A I++++ +G+G VTFS E A+ EM+ + LDGR + V+
Sbjct: 23 LADAFRRFGKVVDAQIMLERHTQRHRGFGFVTFSDPEAVDSAIKEMHCQELDGRTISVNK 82
Query: 62 VRPSRRYNTD 71
P + NTD
Sbjct: 83 AEP--KMNTD 90
>gi|403305068|ref|XP_003943097.1| PREDICTED: polyadenylate-binding protein 1 [Saimiri boliviensis
boliviensis]
Length = 803
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 481 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 532
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV +
Sbjct: 284 DTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 341
Query: 64 PSRRYNTDV 72
+ ++
Sbjct: 342 SRKEREAEL 350
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 374 LKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGR 432
Query: 62 VRPSRRYNTDV 72
+ T++
Sbjct: 433 AQKKVERQTEL 443
>gi|296121725|ref|YP_003629503.1| RNP-1 like RNA-binding protein [Planctomyces limnophilus DSM
3776]
gi|296014065|gb|ADG67304.1| RNP-1 like RNA-binding protein [Planctomyces limnophilus DSM
3776]
Length = 104
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
FS FG+V A ++MD+ SKG+G V F + A A+ MNGK ++GR L V+ RP
Sbjct: 23 FSSFGEVRSAQVVMDRETGRSKGFGFVEFGDSQSASDAINAMNGKDVNGRALTVNEARP 81
>gi|223936242|ref|ZP_03628155.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
gi|223895104|gb|EEF61552.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
Length = 103
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
I D FS G V + +IMDK ++G+G VT +T E A+ A+ ++NGK GR L V+
Sbjct: 19 IQDLFSAHGPVNEVNLIMDKMTGRARGFGFVTMATAEGAEAAIADLNGKEWQGRALTVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|443895166|dbj|GAC72512.1| hypothetical protein PANT_7d00134 [Pseudozyma antarctica T-34]
Length = 301
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD- 60
+A AFS FGQ+T ++ D+ S+G+G VTF+T+ EA A+ +N + LDGR + V+
Sbjct: 19 LAHAFSAFGQLTDYIVMKDRETGRSRGFGFVTFATQGEADAAIAALNEQELDGRRIRVNM 78
Query: 61 -NVRPS 65
N RP+
Sbjct: 79 ANSRPA 84
>gi|21388662|dbj|BAC00787.1| glycine-rich RNA-binding protein [Physcomitrella patens]
Length = 155
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 42/59 (71%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
I +AFS FG+VT+ II D+ S+G+G VTF+T+++A+ AL ++G+ L GR + V+
Sbjct: 58 IKEAFSAFGEVTEVKIICDRDTGRSRGFGFVTFATDQDAEAALQALDGRDLAGRTIRVN 116
>gi|395829049|ref|XP_003787673.1| PREDICTED: polyadenylate-binding protein 1-like [Otolemur
garnettii]
Length = 611
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG++ ++ D + S+G+G V F T EEAQKA+ MNGK + GR+L+V
Sbjct: 207 LQELFSQFGKMLSVKVMRDSSGH-SRGFGFVNFETHEEAQKAVVHMNGKEVSGRLLYV 263
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS +G +T A ++ + G SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPYGMITSAKVMTEGGH--SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 365
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + + D+ + S+G+G V F T E AQ A+ MNG LL+ +FV +
Sbjct: 115 LYDTFSTFGNILSCKVACDE--HGSRGFGFVHFETHEAAQHAINTMNGMLLNDHKVFVGH 172
Query: 62 VRPSRR 67
+ SRR
Sbjct: 173 FK-SRR 177
>gi|209154454|gb|ACI33459.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 206
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 40/59 (67%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ +AFS++G + K ++ D+ S+G+G VTF E+A+ A+ MNGK +DGR++ VD
Sbjct: 21 LEEAFSKYGNIAKVDVVRDRETQRSRGFGFVTFENPEDAKDAMAAMNGKSVDGRMIRVD 79
>gi|259089109|ref|NP_001158591.1| cold inducible RNA binding protein [Oncorhynchus mykiss]
gi|225705082|gb|ACO08387.1| Cold-inducible RNA-binding protein [Oncorhynchus mykiss]
Length = 209
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 40/61 (65%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS++G + K ++ D+ S+G+G VTF E+A+ A+ MNGK +DGR++ VD
Sbjct: 21 LEEAFSKYGNIAKVDVVRDRETRRSRGFGFVTFENPEDAKDAMAAMNGKSVDGRMIRVDE 80
Query: 62 V 62
Sbjct: 81 A 81
>gi|829254|emb|CAA49174.1| glycine-rich RNA-binding protein [Arabidopsis thaliana]
Length = 139
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD--N 61
DAF+ FG V A +I+D+ S+G+G V F+ E A A++EM+GK L+GR + V+ N
Sbjct: 34 DAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 93
Query: 62 VRPS 65
RPS
Sbjct: 94 DRPS 97
>gi|399886791|gb|AFP52931.1| RBP1 [Hordeum vulgare]
Length = 162
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AFS FG++ A II D+ S+G+G V+FS E+ Q A+ MNGK LDGR + V+ +
Sbjct: 28 AFSSFGEILDAKIINDRETGRSRGFGFVSFSNEQAMQDAIEGMNGKELDGRSIVVNEAQS 87
>gi|397575959|gb|EJK49989.1| hypothetical protein THAOC_31088, partial [Thalassiosira oceanica]
Length = 690
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 39/59 (66%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
M+ D F G +T A I+ D N S+G+G V FST E+A +A+ EM+GK++ G+ ++V
Sbjct: 367 MLRDEFGGMGTITSAKIMRDAKTNNSRGFGFVCFSTPEDATRAVNEMSGKIVAGKPIYV 425
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR-----V 56
+ D FS FG + ++ D+ SKGYG V + T E A A+ +++G L+DG+ V
Sbjct: 117 LYDTFSLFGNILSCKVVCDRETGLSKGYGYVHYETNEAAASAIDKLDGMLIDGKEVQVGV 176
Query: 57 LFVDNVRPSRRYNTDV 72
+ RP + T++
Sbjct: 177 FMRRDTRPDQEVYTNL 192
>gi|354544113|emb|CCE40835.1| hypothetical protein CPAR2_108740 [Candida parapsilosis]
Length = 650
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F FG +T A +++D SKG+G V FST EEA KA+TEMN ++++G+ L+V
Sbjct: 363 LEEEFKPFGTITSAKVMVDDA-GKSKGFGFVCFSTPEEATKAITEMNQRMINGKPLYV 419
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG++ + D SK +G V + T E A+ A+ +NG LL+ R +FV
Sbjct: 167 LHDTFSAFGRILSCKVATDD-MGQSKCFGFVHYETGEAAEAAIENVNGMLLNDREVFV 223
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
+ FS GQV+ + D S GY V + E+ +KA+ E+N L++GR
Sbjct: 81 EIFSPIGQVSSIRVCRDAVTKKSLGYAYVNYHKFEDGEKAIDELNYSLVEGR 132
>gi|443919574|gb|ELU39701.1| RNA recognition motif domain-containing protein [Rhizoctonia solani
AG-1 IA]
Length = 716
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 39/65 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+A F G V A + MD+ S+G+ V FS+ EAQKA+ EMNGK +DGR + VD
Sbjct: 126 LAQEFQGCGTVVAARVQMDRNSGKSRGFAYVEFSSPAEAQKAVEEMNGKQIDGREVNVDI 185
Query: 62 VRPSR 66
+P +
Sbjct: 186 SQPRQ 190
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 33/60 (55%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AF +FG VT + D+ KG+G V F +E A KA M GK LDGR L +D +P
Sbjct: 228 AFGEFGDVTHVRLPTDQESGKPKGFGYVEFGDQEGATKAYEAMKGKDLDGRTLRLDYSQP 287
>gi|168016725|ref|XP_001760899.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687908|gb|EDQ74288.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 155
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 42/59 (71%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
I +AFS FG+VT+ II D+ S+G+G VTF+T+++A+ AL ++G+ L GR + V+
Sbjct: 58 IKEAFSAFGEVTEVKIICDRDTGRSRGFGFVTFATDQDAEAALQALDGRDLAGRTIRVN 116
>gi|19114289|ref|NP_593377.1| mRNA export shuttling protein [Schizosaccharomyces pombe 972h-]
gi|3123239|sp|P31209.2|PABP_SCHPO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|2104439|emb|CAB08762.1| mRNA export shuttling protein [Schizosaccharomyces pombe]
Length = 653
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A I+ D+ + SKG+G V ++T EEA KA+TEMN ++L G+ L+V
Sbjct: 384 FSAFGTITSAKIMTDE-QGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYV 436
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+D F QFG++T +++ D+ + +G+G V ++ E AQKA+ E+N K G+ L+V
Sbjct: 277 FSDLFGQFGEITSLSLVKDQ-NDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYV 333
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG++ + +D+ N +KGYG V F + E A A+ +NG LL+ + ++V
Sbjct: 184 LHDTFSAFGKILSCKVAVDELGN-AKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYV 240
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
M+ + F+ G V + D S GY V F E+ +KAL E+N L+ GR
Sbjct: 95 MLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGR 149
>gi|391332716|ref|XP_003740776.1| PREDICTED: polyadenylate-binding protein 1-like [Metaseiulus
occidentalis]
Length = 660
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F+ +G +T A ++MD SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 316 FAPYGTITSAKVMMDSTGARSKGFGFVCFSSPEEATKAVTEMNGRIIVQKPLYV 369
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
I D FS FG + + D+ N S+GYG V F TEE A +A+ ++NG LL+ + +FV
Sbjct: 115 IFDTFSAFGNILSCRVATDEQGN-SRGYGFVHFETEEAANEAINKVNGMLLNEKKVFVGK 173
Query: 62 VRP 64
P
Sbjct: 174 FVP 176
Score = 37.7 bits (86), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLL-DGRVLFV 59
+ + F +G++T A ++ D+ GK S+G+G V+F + A++A+ E+N K L +G+ ++V
Sbjct: 208 LKEMFEVYGKITSARVMTDQTGK--SRGFGFVSFENPDNAEQAVKELNDKELGNGKKIYV 265
>gi|443895761|dbj|GAC73106.1| polyadenylate-binding protein [Pseudozyma antarctica T-34]
Length = 556
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F+ FG +T I M S+G+G V +S EEA KA++EMNGK+LD R L+V
Sbjct: 345 LRDEFAPFGAITSCKI-MRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYV 401
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F+++G++T + D+ SKG+G V F +EAQ A+ E++ G+ LFV
Sbjct: 246 FTKYGKITSCVLQRDE-DGKSKGFGFVNFENHDEAQTAVDELHDSDFKGQKLFV 298
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D F+ FG + + + + S GYG V + T E A A+ +NG LL+ + ++V +
Sbjct: 150 LHDTFAAFGNILSCKVATSE--SGSLGYGFVHYETAEAADAAIKHVNGMLLNDKKVYVGH 207
Query: 62 VRPSRRYNTDVPLARLKI 79
P + + +R +
Sbjct: 208 HIPRKERQAKIEESRARF 225
>gi|2826811|emb|CAA05727.1| AtGRP2 [Arabidopsis thaliana]
Length = 150
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD--N 61
DAF+ FG V A +I+D+ S+G+G V F+ E A A++EM+GK L+GR + V+ N
Sbjct: 53 DAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112
Query: 62 VRPS 65
RPS
Sbjct: 113 DRPS 116
>gi|193592023|ref|XP_001950415.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 39/54 (72%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++MD G+ SKG+G V FS+ EEA KA+TEMN +++ + L+V
Sbjct: 307 FSVFGTITSAKVMMDDGR--SKGFGFVCFSSPEEATKAVTEMNNRIVGTKPLYV 358
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
D FS FG + + D+ SKGYG V F E+ A +++ ++NG LL+G+ +FV
Sbjct: 108 DTFSAFGNILSCKVAQDE-TGQSKGYGFVHFDMEQSATQSIEKVNGMLLNGKKVFV 162
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGK-LLDGRVLFV 59
+ F ++G +T + M K +S+G+G V F +EA+KA++E++GK +G+ +V
Sbjct: 201 EMFEKYGSITSCKV-MFKDDGSSRGFGFVAFEDPKEAEKAVSELHGKESPEGKTYYV 256
>gi|119358437|ref|YP_913081.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides DSM
266]
gi|119355786|gb|ABL66657.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides DSM
266]
Length = 90
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 37/58 (63%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ DAFSQFGQV A II DK SKG+G V ++EA++A+ MN K L GR + V
Sbjct: 17 LRDAFSQFGQVDSANIITDKFSGRSKGFGFVDMPHDDEAREAIESMNDKDLKGRTIKV 74
>gi|224078006|ref|XP_002190593.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Taeniopygia guttata]
Length = 629
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS+FG+ ++MD SKG+G V F EEAQKA+ +MNGK ++GR+L+V
Sbjct: 207 LREIFSRFGKTLSVKVMMDN-NGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRLLYV 263
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 39/54 (72%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS +G +T A ++ + G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPYGTITSAKVMTEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + ++ D+ N S+GYG V F T E A +A+ MNG LL+ R +FV +
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSRGYGFVHFETHEAATRAIETMNGMLLNDRKVFVGH 172
Query: 62 VRPSRRYNTDV 72
+ + +V
Sbjct: 173 FKSRKEREAEV 183
>gi|168699727|ref|ZP_02732004.1| putative RNA-binding protein [Gemmata obscuriglobus UQM 2246]
Length = 113
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 39/59 (66%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
F Q+G V +A I+MD+ S+G+G V + E+EAQ A+ +N +L++GR L V+ +P
Sbjct: 2 FQQYGAVIRAQIVMDRETGRSRGFGFVEMANEQEAQAAIDALNNQLMNGRPLTVNIAKP 60
>gi|62897393|dbj|BAD96637.1| PABPC4 protein variant [Homo sapiens]
Length = 371
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 25 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 76
>gi|308272084|emb|CBX28692.1| Glycine-rich RNA-binding protein 8 [uncultured Desulfobacterium
sp.]
Length = 127
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 37/60 (61%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AF Q G+V +II DK SKG+G V S++ EAQ A+ +NGK L GR + V+ RP
Sbjct: 20 AFEQLGKVDSVSIINDKYSGRSKGFGFVEMSSDAEAQAAIEGLNGKELKGRAINVNEARP 79
>gi|173421|gb|AAA35320.1| poly(A)-binding protein, partial [Schizosaccharomyces pombe]
Length = 628
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A I+ D+ + SKG+G V ++T EEA KA+TEMN ++L G+ L+V
Sbjct: 370 FSAFGTITSAKIMTDE-QGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYV 422
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+D F QFG++T +++ D+ + +G+G V ++ E AQKA+ E+N K G+ L+V
Sbjct: 263 FSDLFGQFGEITSLSLVKDQ-NDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYV 319
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG++ + +D+ N +KGYG V F + E A A+ +NG LL+ + ++V
Sbjct: 170 LHDTFSAFGKILSCKVAVDELGN-AKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYV 226
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
M+ + F+ G V + D S GY V F E+ +KAL E+N L+ GR
Sbjct: 81 MLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGR 135
>gi|209737234|gb|ACI69486.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 146
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 40/59 (67%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ +AFS++G + K ++ D+ S+G+G VTF E+A+ A+ MNGK +DGR++ VD
Sbjct: 21 LEEAFSKYGNIAKVDVVRDRETQRSRGFGFVTFENPEDAKDAMAAMNGKSVDGRMIRVD 79
>gi|116781810|gb|ABK22248.1| unknown [Picea sitchensis]
Length = 215
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ DAF +FG + +A +++D+ S+G+G VTF ++ + A+ M+G LDGR + VD
Sbjct: 23 LEDAFHKFGHLIEAKVVVDRDTGRSRGFGFVTFDDKKSMEDAIDSMHGMSLDGRSITVDR 82
Query: 62 VRP 64
RP
Sbjct: 83 ARP 85
>gi|30682622|ref|NP_849377.1| glycine-rich RNA-binding protein 2 [Arabidopsis thaliana]
gi|332657934|gb|AEE83334.1| glycine-rich RNA-binding protein 2 [Arabidopsis thaliana]
Length = 153
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD--N 61
DAF+ FG V A +I+D+ S+G+G V F+ E A A++EM+GK L+GR + V+ N
Sbjct: 53 DAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112
Query: 62 VRPS 65
RPS
Sbjct: 113 DRPS 116
>gi|15236359|ref|NP_193121.1| glycine-rich RNA-binding protein 2 [Arabidopsis thaliana]
gi|25090505|sp|Q9SVM8.1|GRP2_ARATH RecName: Full=Glycine-rich RNA-binding protein 2, mitochondrial;
Short=AtGRP2; Flags: Precursor
gi|4455314|emb|CAB36849.1| glycine-rich RNA-binding protein AtGRP2-like [Arabidopsis thaliana]
gi|7268089|emb|CAB78427.1| glycine-rich RNA-binding protein AtGRP2-like [Arabidopsis thaliana]
gi|18252853|gb|AAL62353.1| glycine-rich RNA-binding protein AtGRP2 - like [Arabidopsis
thaliana]
gi|21553749|gb|AAM62842.1| glycine-rich RNA-binding protein AtGRP2-like [Arabidopsis thaliana]
gi|25084267|gb|AAN72208.1| glycine-rich RNA-binding protein AtGRP2 - like [Arabidopsis
thaliana]
gi|332657933|gb|AEE83333.1| glycine-rich RNA-binding protein 2 [Arabidopsis thaliana]
Length = 158
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD--N 61
DAF+ FG V A +I+D+ S+G+G V F+ E A A++EM+GK L+GR + V+ N
Sbjct: 53 DAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112
Query: 62 VRPS 65
RPS
Sbjct: 113 DRPS 116
>gi|145333039|ref|NP_001078385.1| glycine-rich RNA-binding protein 2 [Arabidopsis thaliana]
gi|332657935|gb|AEE83335.1| glycine-rich RNA-binding protein 2 [Arabidopsis thaliana]
Length = 144
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD--N 61
DAF+ FG V A +I+D+ S+G+G V F+ E A A++EM+GK L+GR + V+ N
Sbjct: 53 DAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112
Query: 62 VRPS 65
RPS
Sbjct: 113 DRPS 116
>gi|67525063|ref|XP_660593.1| hypothetical protein AN2989.2 [Aspergillus nidulans FGSC A4]
gi|40744384|gb|EAA63560.1| hypothetical protein AN2989.2 [Aspergillus nidulans FGSC A4]
Length = 118
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
++ + FS++G + +A ++ D+ N S+G+G V F++E EA A+ MN + DGR++ VD
Sbjct: 17 VLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGAMNNQEFDGRIIRVD 76
Query: 61 NV--RPSRR 67
RP+ R
Sbjct: 77 KASERPAAR 85
>gi|185133178|ref|NP_001117016.1| hyperosmotic glycine rich protein [Salmo salar]
gi|28173040|gb|AAO32675.1| hyperosmotic glycine rich protein [Salmo salar]
Length = 205
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 40/59 (67%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+A+AFS++G ++K +IMD+ +G+G V + E+A+ A+ MNG+ LDGR + V+
Sbjct: 21 LAEAFSKYGNISKCDVIMDRETGRPRGFGFVKYDNPEDAKDAMDAMNGQSLDGRTIRVN 79
>gi|357152187|ref|XP_003576037.1| PREDICTED: glycine-rich RNA-binding protein blt801-like
[Brachypodium distachyon]
Length = 102
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 39/59 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ +AF FG++ A +I D+ S+G+G VTF+TE+ Q A+ MNGK +DGR + V+
Sbjct: 20 LENAFRSFGEILDAKVIPDRETGRSRGFGFVTFTTEQAMQNAINAMNGKDIDGRTISVN 78
>gi|327271804|ref|XP_003220677.1| PREDICTED: embryonic polyadenylate-binding protein-like [Anolis
carolinensis]
Length = 635
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + ++ D+ N S+GYG V F T E A +A+ MNG LL+ R +FV N
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSRGYGFVHFETHEAANRAIATMNGMLLNDRKVFVGN 172
Query: 62 VRPSRR 67
+ SRR
Sbjct: 173 FK-SRR 177
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS +G +T A ++ + G SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPYGTITSAKVMTEGGH--SKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS FG+ ++ D G+ SKG+G V F ++AQKA+ +MNGK ++GR+L+V
Sbjct: 207 LQETFSIFGKTLSVKVMTDNIGR--SKGFGFVNFEKHQDAQKAVEDMNGKEINGRMLYV 263
>gi|62087504|dbj|BAD92199.1| PABPC4 protein variant [Homo sapiens]
Length = 358
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 12 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 63
>gi|443722844|gb|ELU11546.1| hypothetical protein CAPTEDRAFT_164502 [Capitella teleta]
Length = 629
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FSQFG +T A ++ + G+ +KG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 315 FSQFGTITSARVMTEGGR--TKGFGFVCFSSPEEATKAVTEMNGRIVVAKPLYV 366
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + I MD+ N S GYG V F TEE A+ ++ ++NG LL+G+ +FV
Sbjct: 116 LYDTFSAFGNILSCKIAMDQ--NGSLGYGFVHFETEEAARNSIEKVNGMLLNGKKVFV 171
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F FG++ A + M+ + +G+G V+F E A KA+ E+N K ++G+ ++V
Sbjct: 208 LREMFEVFGKIISAKM-MNTEEGQKRGFGFVSFDDHEAAAKAVEELNNKEVEGKEIYV 264
>gi|383862671|ref|XP_003706807.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3
[Megachile rotundata]
Length = 601
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 39/54 (72%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F+ FG +T A ++M+ G+ SKG+G V FS EEA KA+TEMNG+++ + L+V
Sbjct: 287 FAPFGTITSAKVMMEDGR--SKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 338
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV 62
D FS FG + + D+ SKGYG V F TEE A K++ ++NG LL+G+ F +++
Sbjct: 117 DTFSAFGNILSCKVAQDES-GVSKGYGFVHFETEEAANKSIDKVNGMLLNGKKNFGEDM 174
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 2 IADAFSQFGQVTKATI-IMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGK-LLDGRVLFV 59
+ + F ++G +T + I D GK S+G+G V F + A++A+ E+NGK + +G+ ++V
Sbjct: 179 LKEMFEKYGTITSHKVMIKDDGK--SRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYV 236
>gi|59802525|gb|AAX07506.1| unknown [Gemmata sp. Wa1-1]
Length = 163
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 38/59 (64%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
F +G V A +IMD+ SKG+G V ++++EAQ A+ MNG++ +GR L V+ +P
Sbjct: 84 FGPYGSVQTAQVIMDRDTGRSKGFGFVEMNSDQEAQAAIAGMNGQMSEGRALTVNEAKP 142
>gi|168038795|ref|XP_001771885.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676836|gb|EDQ63314.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 157
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 38/57 (66%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
DAF FG VT II+D+ S+G+G V F++ +EA+ AL EM+G+ L GR + VD
Sbjct: 63 DAFGSFGTVTDVKIILDRDTGRSRGFGFVNFTSPQEAEVALQEMDGRELAGRQIRVD 119
>gi|2624326|emb|CAA05728.1| OsGRP1 [Oryza sativa Japonica Group]
Length = 160
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 41/62 (66%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AFS FG++ ++ II D+ S+G+G VTFS+E+ + A+ MNGK LDGR + V+ +
Sbjct: 27 AFSTFGEILESKIINDRETGRSRGFGFVTFSSEQAMRDAIEGMNGKELDGRNITVNEAQS 86
Query: 65 SR 66
R
Sbjct: 87 RR 88
>gi|148539604|ref|NP_001091917.1| polyA-binding protein [Strongylocentrotus purpuratus]
gi|126722149|emb|CAM57104.1| polyA-binding protein [Strongylocentrotus purpuratus]
Length = 640
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS++G +T A ++ D N SKG+G V FS+ EEA KA+TEMNG++L + L+V
Sbjct: 314 FSRYGTITSAKVMSDDKAN-SKGFGFVCFSSPEEATKAVTEMNGRILVAKPLYV 366
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + ++ D+ +KGYG V F T+E A KA+ ++NG LL+G+ ++V
Sbjct: 117 DTFSAFGHILSCKVVTDE-NGVNKGYGFVHFETQEAANKAIEKVNGMLLNGKKVYVGYFI 175
Query: 64 PSR 66
P +
Sbjct: 176 PRK 178
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+A+ Q+G + A I+ D K SKG+G ++F E A + +NG ++GR L+
Sbjct: 208 LAEFGGQYGSILSAKIMFDDSK--SKGFGFISFEDHEAANDFVKTINGSEVNGRTLYA 263
>gi|115489714|ref|NP_001067344.1| Os12g0632000 [Oryza sativa Japonica Group]
gi|77557139|gb|ABA99935.1| Glycine-rich RNA-binding protein GRP1A, putative, expressed
[Oryza sativa Japonica Group]
gi|113649851|dbj|BAF30363.1| Os12g0632000 [Oryza sativa Japonica Group]
gi|125580173|gb|EAZ21319.1| hypothetical protein OsJ_36973 [Oryza sativa Japonica Group]
gi|215769456|dbj|BAH01685.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 162
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 41/62 (66%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AFS FG++ ++ II D+ S+G+G VTFS+E+ + A+ MNGK LDGR + V+ +
Sbjct: 27 AFSTFGEILESKIINDRETGRSRGFGFVTFSSEQAMRDAIEGMNGKELDGRNITVNEAQS 86
Query: 65 SR 66
R
Sbjct: 87 RR 88
>gi|383862669|ref|XP_003706806.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Megachile rotundata]
Length = 612
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 39/54 (72%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F+ FG +T A ++M+ G+ SKG+G V FS EEA KA+TEMNG+++ + L+V
Sbjct: 316 FAPFGTITSAKVMMEDGR--SKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 367
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + + D+ SKGYG V F TEE A K++ ++NG LL+G+ ++V
Sbjct: 117 DTFSAFGNILSCKVAQDES-GVSKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFI 175
Query: 64 PSR 66
P +
Sbjct: 176 PRK 178
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 2 IADAFSQFGQVTKATI-IMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGK-LLDGRVLFV 59
+ + F ++G +T + I D GK S+G+G V F + A++A+ E+NGK + +G+ ++V
Sbjct: 208 LKEMFEKYGTITSHKVMIKDDGK--SRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYV 265
>gi|196013113|ref|XP_002116418.1| hypothetical protein TRIADDRAFT_30761 [Trichoplax adhaerens]
gi|190581009|gb|EDV21088.1| hypothetical protein TRIADDRAFT_30761, partial [Trichoplax
adhaerens]
Length = 102
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 42/58 (72%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS+FG +T A ++ D+ K SKG+G V F+T+EEA KA+ EM+G+++ + L+V
Sbjct: 23 LKEEFSKFGSITSAKVMCDE-KGASKGFGFVCFATQEEASKAINEMSGRIIVSKPLYV 79
>gi|4704605|gb|AAD28176.1|AF109917_1 glycine-rich RNA-binding protein [Picea glauca]
Length = 155
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 41/59 (69%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ +AFS +G+V ++ II D+ S+G+G VTF+ E+ + A+ MNGK+LDGR + V+
Sbjct: 24 LQEAFSPYGEVVESKIISDRETGRSRGFGFVTFNDEQSMRDAIDAMNGKMLDGRSITVN 82
>gi|395330687|gb|EJF63070.1| RNA-binding domain-containing protein [Dichomitus squalens LYAD-421
SS1]
Length = 272
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 39/57 (68%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
D FS+FG+V K I+ D+ + S+G+G +T ST EEA + + E+NG L+GR + VD
Sbjct: 93 DEFSRFGRVEKVVIVYDQRSDRSRGFGFITMSTTEEATRCIKELNGVELNGRRIRVD 149
>gi|333379577|ref|ZP_08471298.1| hypothetical protein HMPREF9456_02893 [Dysgonomonas mossii DSM
22836]
gi|332884970|gb|EGK05223.1| hypothetical protein HMPREF9456_02893 [Dysgonomonas mossii DSM
22836]
Length = 99
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
F ++G + A +IMD+ + SKGYG V E+A KA++++NG DGR + V RP
Sbjct: 21 FKEYGVINSAKVIMDRSTSRSKGYGFVEMDNNEDANKAISKLNGVEYDGRTISVSEARPR 80
Query: 66 RRYNTD 71
+ N +
Sbjct: 81 QERNNN 86
>gi|544416|sp|Q05966.1|GRP10_BRANA RecName: Full=Glycine-rich RNA-binding protein 10
gi|17819|emb|CAA78513.1| glycine-rich RNA binding protein [Brassica napus]
Length = 169
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 38/59 (64%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
FSQFG+V + II D+ S+G+G VTF E+ + A+ EMNGK LDGR + V+ +
Sbjct: 26 FSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQS 84
>gi|145333041|ref|NP_001078386.1| glycine-rich RNA-binding protein 2 [Arabidopsis thaliana]
gi|332657936|gb|AEE83336.1| glycine-rich RNA-binding protein 2 [Arabidopsis thaliana]
Length = 129
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD--N 61
DAF+ FG V A +I+D+ S+G+G V F+ E A A++EM+GK L+GR + V+ N
Sbjct: 53 DAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112
Query: 62 VRPS 65
RPS
Sbjct: 113 DRPS 116
>gi|301764847|ref|XP_002917846.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ailuropoda melanoleuca]
Length = 492
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV-RP 64
FS FG +++ I+ ++G+ SKG+G + FS+ EEA KA+ EMNG++L + L++ RP
Sbjct: 412 FSSFGSISRVKIMREEGR--SKGFGLICFSSPEEATKAMAEMNGRILGSKPLYIALAQRP 469
Query: 65 SRRYN 69
R N
Sbjct: 470 XERKN 474
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS++G+ ++ D G SKG+G V+F + E A+KA+ EMNGK ++G++LFV
Sbjct: 305 LKEVFSKYGKTLSVKVMTDSG-GKSKGFGFVSFDSHEAAKKAVEEMNGKDVNGQLLFV 361
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS FG++ + ++ D S+GY V F + A +A+ EMNG LL LFV
Sbjct: 213 LYEHFSAFGKILSSKVMSDD--QGSRGYAFVHFQNQNAADRAIEEMNGALLKDCRLFV 268
>gi|261351264|gb|ACX71299.1| RNA-binding protein RZ-1 [Capsicum annuum]
Length = 202
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ DAF +FG + A +++DK S+G+G VTF + + A+ MNG LDGR + VD
Sbjct: 23 LKDAFEKFGNLVDAKVVLDKFSGRSRGFGFVTFDDKRAMEDAIEAMNGMDLDGRAITVDK 82
Query: 62 VRP 64
+P
Sbjct: 83 AQP 85
>gi|154270523|ref|XP_001536116.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150409920|gb|EDN05308.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 633
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 38/66 (57%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + FSQ + AT+++D SKGYG VTF+ E+A KAL E NG DGR L ++
Sbjct: 58 LTEYFSQSYPLKHATVVLDPQTKQSKGYGFVTFADHEDAAKALEEFNGSDFDGRKLKIEV 117
Query: 62 VRPSRR 67
P R
Sbjct: 118 AEPRHR 123
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+++ F FG+V K +I +G S G+G V + A+KAL +NGK +DGR L VD
Sbjct: 168 QLSNLFRSFGKV-KHAVIPKRGTKHS-GFGFVVLRGRKNAEKALNAVNGKEVDGRTLAVD 225
>gi|261193242|ref|XP_002623027.1| ribosome biogenesis protein Nop4 [Ajellomyces dermatitidis
SLH14081]
gi|239589162|gb|EEQ71805.1| ribosome biogenesis protein Nop4 [Ajellomyces dermatitidis
SLH14081]
gi|327356849|gb|EGE85706.1| ribosome biogenesis protein Nop4 [Ajellomyces dermatitidis ATCC
18188]
Length = 744
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + FSQ + AT+++D SKGYG VTF+ E+A KAL E NG + DG+ L ++
Sbjct: 65 LTEYFSQSYPLKHATVVLDPQTKQSKGYGFVTFADHEDAAKALEEFNGSVFDGKKLKIEV 124
Query: 62 VRPSRR 67
P R
Sbjct: 125 AEPRHR 130
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+A F FG+V K +I +G S G+G V + A+KAL +NGK +DGR L VD
Sbjct: 175 QLAALFRSFGKV-KHAVIPKRGTQHS-GFGFVVLRGRKNAEKALEAVNGKEIDGRTLAVD 232
>gi|395007942|ref|ZP_10391636.1| RRM domain-containing RNA-binding protein [Acidovorax sp. CF316]
gi|394314048|gb|EJE51000.1| RRM domain-containing RNA-binding protein [Acidovorax sp. CF316]
Length = 117
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
FS+FG VT A ++MD+ SKG+G V ++ E AQ A+T ++G +DGR + V+ RP
Sbjct: 23 FSEFGNVTSAKVMMDRETGRSKGFGFVEMASAEVAQAAITGLHGMSVDGRSIVVNLARP 81
>gi|213406493|ref|XP_002174018.1| nucleolar protein [Schizosaccharomyces japonicus yFS275]
gi|212002065|gb|EEB07725.1| nucleolar protein [Schizosaccharomyces japonicus yFS275]
Length = 690
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS V A ++ DK SKG+G VTFS E+A +AL E+ K LDGR+L ++
Sbjct: 23 LTDFFSNAAPVKHAVVVTDKETGQSKGFGFVTFSLHEDAVRALEELKNKKLDGRILRMEF 82
Query: 62 VRPSRR 67
P +R
Sbjct: 83 AAPRKR 88
>gi|165875543|gb|ABY68599.1| poly(A) binding protein cytoplasmic 1 [Ovis aries]
Length = 289
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 31 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 82
>gi|383862667|ref|XP_003706805.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Megachile rotundata]
Length = 630
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 39/54 (72%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F+ FG +T A ++M+ G+ SKG+G V FS EEA KA+TEMNG+++ + L+V
Sbjct: 316 FAPFGTITSAKVMMEDGR--SKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 367
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + + D+ SKGYG V F TEE A K++ ++NG LL+G+ ++V
Sbjct: 117 DTFSAFGNILSCKVAQDES-GVSKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFI 175
Query: 64 PSR 66
P +
Sbjct: 176 PRK 178
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 2 IADAFSQFGQVTKATI-IMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGK-LLDGRVLFV 59
+ + F ++G +T + I D GK S+G+G V F + A++A+ E+NGK + +G+ ++V
Sbjct: 208 LKEMFEKYGTITSHKVMIKDDGK--SRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYV 265
>gi|452820609|gb|EME27649.1| poly(A) binding / translation initiation factor [Galdieria
sulphuraria]
Length = 784
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T ++ D K S+G+G V FST EEA KA+TEMNGK++ + L+V
Sbjct: 383 FSNFGTLTSCRVMRDD-KGVSRGFGFVCFSTPEEATKAVTEMNGKMMGKKPLYV 435
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
I + FS +G++T + +D+ + KG+ V F+ E A KA+ E+NG+ +G+ L+V
Sbjct: 276 IRELFSLYGEITSVYVPVDENE-VPKGFAFVNFAKPECAAKAVEELNGRDFEGKSLYV 332
Score = 41.2 bits (95), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
D FS FG + + D N S GYG V F E+A+ A+ ++NG LL+ + ++V
Sbjct: 186 DTFSVFGNILSCKVATDDEGN-SLGYGFVHFENPEDAETAINKVNGMLLNDKQVYV 240
>gi|418360878|ref|ZP_12961542.1| RNA-binding protein [Aeromonas salmonicida subsp. salmonicida
01-B526]
gi|356687961|gb|EHI52534.1| RNA-binding protein [Aeromonas salmonicida subsp. salmonicida
01-B526]
Length = 81
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
FSQFGQV K II+D+ SKG+G + +A+KA+ ++G + GR + V+ +P
Sbjct: 10 FSQFGQVDKVDIIIDRDTGQSKGFGFIEMPVNGDAEKAIAGLHGTEIGGRTITVNQAKP- 68
Query: 66 RRYNTDVPLARLKIH 80
TD P R + H
Sbjct: 69 ---KTDAPRGRPQRH 80
>gi|336371226|gb|EGN99565.1| hypothetical protein SERLA73DRAFT_159820 [Serpula lacrymans var.
lacrymans S7.3]
Length = 127
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 45/65 (69%), Gaps = 2/65 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD- 60
+ +AFS++GQV + ++ D+ S+G+G VTFS+E+EA+ A+ ++ + LDGR + V+
Sbjct: 19 LREAFSEYGQVVDSIVMRDRETGRSRGFGFVTFSSEQEAEAAINSLHEQDLDGRRIKVNL 78
Query: 61 -NVRP 64
N RP
Sbjct: 79 ANARP 83
>gi|1262583|dbj|BAA02244.1| polyadenylate binding protein II [Homo sapiens]
Length = 193
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 125 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 176
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+++FV
Sbjct: 18 LKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 74
>gi|388511713|gb|AFK43918.1| unknown [Lotus japonicus]
Length = 141
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 41/64 (64%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + F++FG+V A ++ D+ SKG+G V ++T EEA K + M+GK LDG V+F +
Sbjct: 60 LREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGMDGKFLDGWVIFAEY 119
Query: 62 VRPS 65
+ S
Sbjct: 120 AKSS 123
>gi|242025596|ref|XP_002433210.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
gi|212518751|gb|EEB20472.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
Length = 637
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F+ FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 316 FTPFGTITSAKVMLEDGR--SKGFGFVCFSSAEEATKAVTEMNGRIVGSKPLYV 367
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + + D+ TSKGYG V F TEE A K++ ++NG LL+G+ +FV
Sbjct: 117 DTFSTFGNILSCKVAQDES-GTSKGYGFVHFETEEAANKSIDKVNGMLLNGKRVFVGKFI 175
Query: 64 PSR 66
P +
Sbjct: 176 PRK 178
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGK-LLDGRVLFV 59
++ + F ++G++T + +M K SKG+G V F E A+KA+ +NGK +++G+ LFV
Sbjct: 207 LLREMFEKYGRIT-SHKVMSKDDGKSKGFGFVAFEDPEAAEKAVASLNGKEIVEGKPLFV 265
>gi|256421371|ref|YP_003122024.1| RNP-1 like RNA-binding protein [Chitinophaga pinensis DSM 2588]
gi|256036279|gb|ACU59823.1| RNP-1 like RNA-binding protein [Chitinophaga pinensis DSM 2588]
Length = 108
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
FS+FG+VT A II D S+G+G V +EE KA+ +NG ++G+ L V+ RP
Sbjct: 21 FSEFGEVTSAKIIKDHETGRSRGFGFVEMPNQEEGSKAMDSLNGTEIEGKQLMVNEARPK 80
Query: 66 RRYNT 70
+ N
Sbjct: 81 QPNNN 85
>gi|121583453|ref|YP_973884.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans
CJ2]
gi|120596707|gb|ABM40142.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans
CJ2]
Length = 150
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +F QFG VT A ++M++ SKG+G V + + +AQ A+ MNG+ L GR + V+
Sbjct: 19 LQQSFGQFGAVTSAKVMMERDTGRSKGFGFVEMANDAQAQAAINGMNGQPLGGRSITVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|74137801|dbj|BAE24074.1| unnamed protein product [Mus musculus]
Length = 550
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 39/54 (72%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V F + EEA KA+TEMNG+++ + L+V
Sbjct: 215 FSPFGSITSAKVMLEDGR--SKGFGFVCFPSREEATKAVTEMNGRIVGSKPLYV 266
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 16 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGLLLNDRKVFV 71
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D S+G+G V++ E+A KA+ EMNGK + G+ +FV
Sbjct: 108 LKELFSQFGKTLSVKVMRDS-SGKSRGFGFVSYEKHEDANKAVDEMNGKEMSGKAIFV 164
>gi|311698159|gb|ADQ00374.1| glycine-rich RNA-binding protein [Sequoia sempervirens]
Length = 194
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ DAFS FG+V ++ I+ D+ S+G+G VTFS E+ A+ MNGK LDGR + V+
Sbjct: 24 LHDAFSPFGEVLESKIVSDRETGRSRGFGFVTFSDEQAMMDAIEAMNGKELDGRNITVNQ 83
Query: 62 VRP 64
+
Sbjct: 84 AQS 86
>gi|325182450|emb|CCA16902.1| polyadenylatebinding protein putative [Albugo laibachii Nc14]
Length = 675
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ +AF+ +G +T A ++ D N S+G+G V FST EEA A+ EMNGKL+ G+ ++V
Sbjct: 377 LREAFTNYGTITSARVMRDSTGN-SRGFGFVCFSTPEEAATAVAEMNGKLITGKPVYV 433
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + + D SKGYG V + T E A +A+ ++NG L+ G +FV
Sbjct: 180 LYDTFSLFGNILSCKVANDP-TGQSKGYGYVHYETAEAATEAINKINGMLIAGTEVFV 236
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDG 54
F FGQV A ++ D T++G+G V + + A A+ ++GK G
Sbjct: 272 FEPFGQVNSAVVMKDPNSATNRGFGFVNYEDADGAHAAVEGLSGKTFKG 320
>gi|302818104|ref|XP_002990726.1| hypothetical protein SELMODRAFT_185536 [Selaginella moellendorffii]
gi|300141464|gb|EFJ08175.1| hypothetical protein SELMODRAFT_185536 [Selaginella moellendorffii]
Length = 738
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F Q+G+V + +I DK N SKGYG V F EEA +A+TE++ + GR+L V
Sbjct: 245 FGQYGEVVQVHVICDKETNRSKGYGYVGFMLPEEATRAMTELDNSIFQGRLLHV 298
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 22 GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYNTDVP 73
G + S G+G V F + + A++ EM G +LDG L ++PSR + + P
Sbjct: 576 GASLSMGFGFVEFDSTDTAERVCKEMQGSVLDGHALV---LQPSRAGDDEKP 624
>gi|108863012|gb|ABG22105.1| Glycine-rich RNA-binding protein GRP1A, putative, expressed
[Oryza sativa Japonica Group]
Length = 117
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 41/62 (66%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AFS FG++ ++ II D+ S+G+G VTFS+E+ + A+ MNGK LDGR + V+ +
Sbjct: 27 AFSTFGEILESKIINDRETGRSRGFGFVTFSSEQAMRDAIEGMNGKELDGRNITVNEAQS 86
Query: 65 SR 66
R
Sbjct: 87 RR 88
>gi|226505736|ref|NP_001150149.1| LOC100283778 [Zea mays]
gi|195605606|gb|ACG24633.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195606158|gb|ACG24909.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195637130|gb|ACG38033.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195645710|gb|ACG42323.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|238009788|gb|ACR35929.1| unknown [Zea mays]
gi|413951537|gb|AFW84186.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 156
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 45/64 (70%), Gaps = 2/64 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD--N 61
+AFS FG+VT+A +I D+ S+G+G V +S + A++A++ M+GK +DGR + V+ N
Sbjct: 55 EAFSSFGEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAISAMDGKEIDGRQVRVNMAN 114
Query: 62 VRPS 65
RP+
Sbjct: 115 ERPA 118
>gi|388567211|ref|ZP_10153648.1| putative RNA-binding protein rbpB [Hydrogenophaga sp. PBC]
gi|388265594|gb|EIK91147.1| putative RNA-binding protein rbpB [Hydrogenophaga sp. PBC]
Length = 97
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 38/59 (64%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
FS+FG V A ++ D+ SKG+G V ++E EAQ A+ +NG+ +DGR + V+ RP
Sbjct: 23 FSEFGNVASAKVMTDRDSGRSKGFGFVEMASEAEAQAAINGLNGQSVDGRQIVVNVSRP 81
>gi|406873754|gb|EKD23843.1| hypothetical protein ACD_81C00167G0002 [uncultured bacterium]
Length = 111
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FSQ G V A II+DK SKG+G V ++++EA+KA+ NGK +GR L V+
Sbjct: 19 LNDLFSQAGTVESAMIIIDKMTGRSKGFGFVEMASDDEAEKAIDMFNGKDFEGRSLTVNV 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|307103841|gb|EFN52098.1| hypothetical protein CHLNCDRAFT_59028 [Chlorella variabilis]
Length = 634
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 40/54 (74%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FSQFG +T A +++D S+G+G V +++ EEA +A+TEMNG+++ G+ ++V
Sbjct: 342 FSQFGTITSAKVMVDSA-GKSRGFGFVCYASPEEATRAVTEMNGRMIKGKPIYV 394
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + + D K SKGYG V F +E A+ A+ ++NG LL+G+ ++V
Sbjct: 145 LHDTFSAFGNILSCKVAQDL-KGESKGYGFVHFEKDESARLAIEKVNGMLLEGKKVYV 201
Score = 37.7 bits (86), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F++ G V + IIM + SKG+G + F E+A A+ +NGK ++ + L+V
Sbjct: 239 FAEHGTVN-SCIIMRDDEGKSKGFGFINFEEPEQAASAVQALNGKDVNCKELYV 291
>gi|145298735|ref|YP_001141576.1| RNA-binding protein [Aeromonas salmonicida subsp. salmonicida
A449]
gi|142851507|gb|ABO89828.1| RNA-binding protein [Aeromonas salmonicida subsp. salmonicida
A449]
Length = 92
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
FSQFGQV K II+D+ SKG+G + +A+KA+ ++G + GR + V+ +P
Sbjct: 21 FSQFGQVDKVDIIIDRDTGQSKGFGFIEMPVNGDAEKAIAGLHGTEIGGRTITVNQAKP- 79
Query: 66 RRYNTDVPLARLKIH 80
TD P R + H
Sbjct: 80 ---KTDAPRGRPQRH 91
>gi|195642478|gb|ACG40707.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 153
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 45/64 (70%), Gaps = 2/64 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD--N 61
+AFS FG+VT+A +I D+ S+G+G V +S + A++A++ M+GK +DGR + V+ N
Sbjct: 55 EAFSSFGEVTEARVITDRETGRSRGFGFVNYSDSDAAKEAISAMDGKEIDGRQVRVNMAN 114
Query: 62 VRPS 65
RP+
Sbjct: 115 ERPA 118
>gi|148298695|ref|NP_001091823.1| poly A binding protein [Bombyx mori]
gi|111608107|gb|ABH10797.1| poly A binding protein [Bombyx mori]
Length = 603
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F+ FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 307 FAPFGTITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 358
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + + D+ SKGYG V F TEE A K++ ++NG LL+G++++V
Sbjct: 108 DTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKVNGMLLNGKMVYVGRFI 166
Query: 64 PSR 66
P +
Sbjct: 167 PRK 169
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGK-LLDGRVLFV 59
M+ D F ++G++T + M K S+G+G V F + A++A E+NGK L++G+ L+V
Sbjct: 198 MLKDMFEKYGRITSHKV-MYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYV 256
>gi|444726222|gb|ELW66761.1| Polyadenylate-binding protein 1-like protein [Tupaia chinensis]
Length = 568
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FSQFG++ ++ D + S+G+G V F EEAQKA+ MNGK + GR+L+V
Sbjct: 182 LQDLFSQFGKMLSVKVMRDSSGH-SRGFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYV 238
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS +G +T A ++ + G SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 289 FSPYGVITSAKVMTEGGH--SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 340
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + ++ D+ + S+G+G V F T + AQ+A++ MNG LL+ R +FV +
Sbjct: 90 LYDTFSTFGNILSCKVVCDE--HGSRGFGFVHFETHDAAQRAISTMNGMLLNDRKVFVGH 147
Query: 62 VRPSRRYNTDV 72
+ R ++
Sbjct: 148 FKSRREREAEL 158
>gi|389608229|dbj|BAM17726.1| polyA-binding protein [Papilio xuthus]
Length = 619
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F+ FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 316 FAPFGTITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 367
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D F+ FG + + D+ SKGYG V F TEE A K++ ++NG LL+G+ ++V
Sbjct: 117 DTFTAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFI 175
Query: 64 PSR 66
P +
Sbjct: 176 PRK 178
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGK-LLDGRVLFV 59
M+ + F ++G++T + +M K +S+G+G V F + A++A E+NGK L++G+ L+V
Sbjct: 207 MLREMFEKYGRIT-SHKVMYKEDGSSRGFGFVAFEDPDAAERACMELNGKELVEGKPLYV 265
>gi|297739973|emb|CBI30155.3| unnamed protein product [Vitis vinifera]
Length = 190
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 43/63 (68%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ DAFS++G++ ++ ++M++ +G+G +TF+ + A+ EM+G+ LDGRV+ V+
Sbjct: 23 LEDAFSRYGKILESLVMMERDTGRPRGFGFITFADHRAMEDAIREMHGRELDGRVISVNK 82
Query: 62 VRP 64
+P
Sbjct: 83 AQP 85
>gi|121583148|ref|YP_973589.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans
CJ2]
gi|120596410|gb|ABM39847.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans
CJ2]
Length = 148
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +F QFG VT A ++M++ SKG+G V + + +AQ A+ MNG+ L GR + V+
Sbjct: 19 LQQSFGQFGTVTSAKVMMERDTGRSKGFGFVEMANDAQAQAAINGMNGQPLGGRSITVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|389610655|dbj|BAM18939.1| polyA-binding protein [Papilio polytes]
Length = 611
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F+ FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 316 FAPFGTITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 367
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + + D+ SKGYG V F TEE A K++ ++NG LL+G+ ++V
Sbjct: 117 DTFSAFGNILSCKVAQDE-TGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFI 175
Query: 64 PSR 66
P +
Sbjct: 176 PRK 178
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGK-LLDGRVLFV 59
M+ + F ++G++T + +M K +S+G+G V F + A++A E+NGK L++G+ L+V
Sbjct: 207 MLREMFEKYGRIT-SHKVMYKEDGSSRGFGFVAFEDPDAAERACMELNGKELVEGKPLYV 265
>gi|357127016|ref|XP_003565182.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Brachypodium distachyon]
Length = 109
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 35/54 (64%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
+ DAFSQ G VT+ +I SKGYG V FS+E EA AL +M+ +LLDGR
Sbjct: 46 LKDAFSQHGTVTEVKVICHPVTGRSKGYGFVKFSSESEAAAALEKMSNELLDGR 99
>gi|351730017|ref|ZP_08947708.1| RNP-1 like RNA-binding protein [Acidovorax radicis N35]
Length = 115
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 39/59 (66%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
FS+FG VT A ++MD+ SKG+G V ++ E AQ A++ ++G +DGR + V+ RP
Sbjct: 23 FSEFGNVTSAKVMMDRETGRSKGFGFVEMASAEVAQAAISALHGMSVDGRSIVVNLARP 81
>gi|146328793|ref|YP_001209360.1| RNA recognition motif-containing protein [Dichelobacter nodosus
VCS1703A]
gi|146232263|gb|ABQ13241.1| RNA recognition motif protein [Dichelobacter nodosus VCS1703A]
Length = 95
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFSQFG V A+II D+ SKG+G V E A+KA+ +N K L GR L ++
Sbjct: 18 LRNAFSQFGDVQNASIIKDRDSGRSKGFGFVEMPDAEAAKKAIESLNDKDLGGRNLKINE 77
Query: 62 VRP 64
RP
Sbjct: 78 ARP 80
>gi|56971379|gb|AAH88337.1| Pabpc4 protein, partial [Rattus norvegicus]
Length = 415
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 69 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 120
>gi|302762761|ref|XP_002964802.1| hypothetical protein SELMODRAFT_69504 [Selaginella
moellendorffii]
gi|300167035|gb|EFJ33640.1| hypothetical protein SELMODRAFT_69504 [Selaginella
moellendorffii]
Length = 94
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 7/71 (9%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AF+ +G+VT+A +IMD+ S+G+G VTF + EA+ A+ M+G L GR + VD
Sbjct: 14 AFANYGEVTEARVIMDRETGRSRGFGFVTFENDNEAKAAVQGMDGHELGGRSIRVD---- 69
Query: 65 SRRYNTDVPLA 75
Y +D P A
Sbjct: 70 ---YASDRPSA 77
>gi|325296731|ref|NP_001191601.1| ELAV 2-like protein [Aplysia californica]
gi|65307079|gb|AAY42042.1| ELAV 2-like protein [Aplysia californica]
Length = 325
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 33/54 (61%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG V K I++D KN KGYG VT + +EAQ A+ +NG GRVL V
Sbjct: 261 FSPFGTVQKVNIMLDHEKNQCKGYGFVTMTNYQEAQNAINCLNGYFFQGRVLQV 314
>gi|64970|emb|CAA40721.1| polyA binding protein [Xenopus laevis]
Length = 633
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 39/54 (72%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FLPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV 170
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 2 IADAFSQFGQVTKATIIMD-KGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F ++G ++ D GK SKG+G V+F E+AQKA+ EMNGK ++G+ +FV
Sbjct: 207 LKEMFGKYGPALSVKVMTDDNGK--SKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFV 263
>gi|68468953|ref|XP_721535.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|68469502|ref|XP_721264.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|74680286|sp|Q5AI15.1|PABP_CANAL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|46443173|gb|EAL02457.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|46443455|gb|EAL02737.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|238879187|gb|EEQ42825.1| polyadenylate-binding protein [Candida albicans WO-1]
Length = 629
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F FG +T A +++D+ SKG+G V F+T EEA KA+TEMN ++++G+ L+V
Sbjct: 352 LEEEFKPFGTITSAKVMVDEA-GKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYV 408
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 6 FSQFGQVTKATIIMDKGKN-TSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
FS FG++T +I ++K ++ SKG+G V F E A KA+ E+N K ++G+ ++V +
Sbjct: 253 FSPFGKIT--SIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQK 310
Query: 65 SR 66
R
Sbjct: 311 KR 312
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
+ FS GQV+ + D S GY V + E+ +KA+ E+N ++GR
Sbjct: 70 EIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELNYNPIEGR 121
>gi|1778374|gb|AAB71417.1| glycine-rich RNA-binding protein PsGRBP [Pisum sativum]
gi|206586422|gb|ACI15745.1| glycine-rich RNA-binding protein [Pisum sativum]
Length = 146
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 44/66 (66%), Gaps = 2/66 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD- 60
+ DAF+ +G+V +A +I D+ S+G+G V F+++E A AL+ M+G+ L+GR + V
Sbjct: 52 LKDAFASYGEVVEARVITDRDTGRSRGFGFVNFTSDESATSALSAMDGQDLNGRNIRVSY 111
Query: 61 -NVRPS 65
N RPS
Sbjct: 112 ANDRPS 117
>gi|356519721|ref|XP_003528518.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Glycine max]
Length = 137
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 39/59 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ +AFS FG VT+ TI+ DK S+G+G V FS E++A+ A M+GK L GR L ++
Sbjct: 54 LKEAFSSFGDVTEVTIVYDKDSGRSRGFGFVIFSNEDDAKCAKDAMDGKALLGRPLRIN 112
>gi|297741463|emb|CBI32594.3| unnamed protein product [Vitis vinifera]
Length = 121
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 41/60 (68%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AFSQFG++ ++ II D+ S+G+G VTFS+E+ + A+ MNG+ LDGR + V+ +
Sbjct: 27 AFSQFGEILESKIINDRETGRSRGFGFVTFSSEQSMRDAIEGMNGQNLDGRNITVNEAQS 86
>gi|357119387|ref|XP_003561423.1| PREDICTED: glycine-rich RNA-binding protein blt801-like
[Brachypodium distachyon]
Length = 161
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 41/63 (65%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ DAFS FG++ + II D+ S+G+G VTF++E+ + A+ MNGK LDGR + V+
Sbjct: 22 LQDAFSSFGEIIDSKIINDRETGRSRGFGFVTFASEQSMRDAIEGMNGKDLDGRNITVNE 81
Query: 62 VRP 64
+
Sbjct: 82 AQS 84
>gi|148232824|ref|NP_001080204.1| polyadenylate-binding protein 1-A [Xenopus laevis]
gi|623598|gb|AAA60936.1| poly(A)-binding protein [Xenopus laevis]
Length = 633
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 39/54 (72%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FLPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV 170
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 2 IADAFSQFGQVTKATIIMD-KGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F ++G ++ D GK SKG+G V+F E+AQKA+ EM GK ++G+ +FV
Sbjct: 207 LKEMFGKYGPALSVKVMTDDNGK--SKGFGFVSFERHEDAQKAVDEMYGKDMNGKSMFV 263
>gi|294461052|gb|ADE76094.1| unknown [Picea sitchensis]
Length = 150
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 47/75 (62%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
++ DAFS +G++ + +I+++ SKG+G V F++E +A AL EM+G+ LDGR + V+
Sbjct: 50 VLRDAFSLYGEILEVRVIINRASGLSKGFGFVQFASETDAVNALKEMDGQSLDGRNIRVN 109
Query: 61 NVRPSRRYNTDVPLA 75
R ++ P A
Sbjct: 110 FANTRARQDSAPPKA 124
>gi|94730404|sp|P20965.3|PABPA_XENLA RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein 1-A; Short=xPABP1-A;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-A
gi|30353795|gb|AAH52100.1| Pabpc1 protein [Xenopus laevis]
Length = 633
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 39/54 (72%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FLPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV 170
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 2 IADAFSQFGQVTKATIIMD-KGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F ++G ++ D GK SKG+G V+F E+AQKA+ EMNGK ++G+ +FV
Sbjct: 207 LKEMFGKYGPALSVKVMTDDNGK--SKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFV 263
>gi|6137350|pdb|1CVJ|A Chain A, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137351|pdb|1CVJ|B Chain B, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137352|pdb|1CVJ|C Chain C, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137353|pdb|1CVJ|D Chain D, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137354|pdb|1CVJ|E Chain E, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137355|pdb|1CVJ|F Chain F, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137356|pdb|1CVJ|G Chain G, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137357|pdb|1CVJ|H Chain H, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
Length = 190
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
>gi|289742137|gb|ADD19816.1| polyA-binding protein [Glossina morsitans morsitans]
Length = 653
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
I D FS FG + + D K TSKGYG V F TEE A A+ ++NG LL+G+ ++V
Sbjct: 106 IYDTFSAFGNILSCKVATDD-KGTSKGYGFVHFETEEAANNAIEKVNGMLLNGKKVYVGK 164
Query: 62 VRPSRRYNTDV 72
P + D+
Sbjct: 165 FIPRKEREKDL 175
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++ D+ SKG+G V F EA A+TEMNG+++ + L+V
Sbjct: 307 FSLFGTITSAKVMTDE-DGRSKGFGFVCFVAPHEATCAVTEMNGRVVGSKPLYV 359
>gi|297620951|ref|YP_003709088.1| RNA-binding protein [Waddlia chondrophila WSU 86-1044]
gi|297376252|gb|ADI38082.1| RNA-binding protein [Waddlia chondrophila WSU 86-1044]
gi|337293226|emb|CCB91217.1| putative RNA-binding protein rbpA [Waddlia chondrophila 2032/99]
Length = 92
Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV- 62
D F+ FG+V A II D+ SKG+G V F+ +E A++A+ E+NG +GR + V+
Sbjct: 19 DYFASFGEVLSAKIITDRFTGQSKGFGFVEFADKEAAEEAIKELNGSNFEGRSIVVNEAK 78
Query: 63 ----RPSRRYNT 70
RP RR T
Sbjct: 79 PMEDRPPRRSKT 90
>gi|225560420|gb|EEH08701.1| RNA recognition domain-containing protein-containing protein
[Ajellomyces capsulatus G186AR]
Length = 740
Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 38/66 (57%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + FSQ + AT+++D SKGYG VTF+ E+A KAL E NG DGR L ++
Sbjct: 63 LTEYFSQSYPLKHATVVLDPQTKQSKGYGFVTFADHEDAAKALEEFNGSDFDGRKLKIEV 122
Query: 62 VRPSRR 67
P R
Sbjct: 123 AEPRHR 128
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
++ F FG+V K +I +G S G+G V + A+KAL +NGK +DGR L VD
Sbjct: 173 QLSSLFRSFGKV-KHAVIPKRGTKHS-GFGFVVLRGRKNAEKALNAVNGKEVDGRTLAVD 230
>gi|167520490|ref|XP_001744584.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776915|gb|EDQ90533.1| predicted protein [Monosiga brevicollis MX1]
Length = 86
Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 37/55 (67%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
F FGQ+ K II D+ S+G+G VTF ++E+AQ+A ++NG +DGR + VD
Sbjct: 22 FGDFGQLEKCIIIHDRQNGRSRGFGFVTFVSDEDAQRAREKLNGARIDGRNVRVD 76
>gi|384493509|gb|EIE84000.1| hypothetical protein RO3G_08705 [Rhizopus delemar RA 99-880]
Length = 624
Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 41/54 (75%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS +G +T A ++ D+ K+TSKG+G V FS+ +EA KA+TEMNG+++ + ++V
Sbjct: 348 FSVYGVITSAKVMCDE-KDTSKGFGFVCFSSPDEATKAVTEMNGRMIGSKPIYV 400
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + I +D+ N SKGYG V + TEE A A+ +NG LL+ + ++V
Sbjct: 148 LHDTFSAFGNILSCKIALDESGN-SKGYGFVHYETEEAADNAIKHVNGMLLNDKKVYVGR 206
Query: 62 VRPSRRYNTDVPLARLKI 79
P + + R K
Sbjct: 207 HVPKKERQAKIEQFRAKF 224
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ ++FG +T A + D + SKG+G V F E+AQKA+ +N G++L+V
Sbjct: 243 EMLAKFGPITSALVQTDD-EGKSKGFGFVNFENHEDAQKAVDALNETEHKGKILYV 297
>gi|400260922|pdb|4F02|A Chain A, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
gi|400260925|pdb|4F02|D Chain D, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
Length = 213
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 120 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 175
>gi|333993552|ref|YP_004526165.1| RNP-1 like RNA-binding protein [Treponema azotonutricium ZAS-9]
gi|333734416|gb|AEF80365.1| RNP-1 like RNA-binding protein [Treponema azotonutricium ZAS-9]
Length = 100
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV--R 63
FSQFG VT + II D+ +SKG+G + ST+EEA A+T NG +GR L V+ +
Sbjct: 23 FSQFGNVTSSKIIFDRESGSSKGFGFIEMSTDEEAAAAITGTNGHEFEGRQLRVNEAMDK 82
Query: 64 PSR 66
P R
Sbjct: 83 PRR 85
>gi|312282683|dbj|BAJ34207.1| unnamed protein product [Thellungiella halophila]
Length = 166
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 38/58 (65%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
FSQFG+V + II D+ S+G+G VTF E+ + A+ EMNGK LDGR + V+ +
Sbjct: 27 FSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEEMNGKELDGRSITVNEAQ 84
>gi|212550891|ref|YP_002309208.1| RNA-binding protein RbpA [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
gi|212549129|dbj|BAG83797.1| putative RNA-binding protein RbpA [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
Length = 98
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + F +G V+ A +I+D+ + SKGYG V +EEA+KA+ E+NG D R + V
Sbjct: 17 LKNLFESYGTVSSARVIIDRQTSRSKGYGFVEMEDDEEARKAIAELNGSEFDERTISVSE 76
Query: 62 VRP 64
RP
Sbjct: 77 ARP 79
>gi|357628251|gb|EHJ77641.1| poly A binding protein [Danaus plexippus]
Length = 601
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F+ FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 307 FAPFGTITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 358
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + + D+ SKGYG V F TEE A K++ ++NG LL+G+ ++V
Sbjct: 108 DTFSAFGNILSCKVAQDEN-GASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFI 166
Query: 64 PSR 66
P +
Sbjct: 167 PRK 169
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGK-LLDGRVLFV 59
M+ D F ++G++T + +M K +S+G+G V F + A++A E+NGK L++G+ L+V
Sbjct: 198 MLRDMFEKYGRIT-SHKVMYKEDGSSRGFGFVAFEDPDAAERACLELNGKELVEGKPLYV 256
>gi|351695842|gb|EHA98760.1| Polyadenylate-binding protein 1 [Heterocephalus glaber]
Length = 709
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 207 DTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 260
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 297 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 353
>gi|359475330|ref|XP_003631658.1| PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Vitis
vinifera]
Length = 162
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 41/59 (69%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
AFSQFG++ ++ II D+ S+G+G VTFS+E+ + A+ MNG+ LDGR + V+ +
Sbjct: 27 AFSQFGEILESKIINDRETGRSRGFGFVTFSSEQSMRDAIEGMNGQNLDGRNITVNEAQ 85
>gi|337278094|ref|YP_004617565.1| RNA-binding protein [Ramlibacter tataouinensis TTB310]
gi|334729170|gb|AEG91546.1| Candidate RNA-binding protein [Ramlibacter tataouinensis TTB310]
Length = 95
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ AFSQFG V A ++MD+ SKG+G V + EAQ A+ M+G+ GR L V+
Sbjct: 19 MQQAFSQFGTVGSAKVVMDRDTGRSKGFGFVEMGSAAEAQSAIQGMHGQQHGGRDLVVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|302756609|ref|XP_002961728.1| hypothetical protein SELMODRAFT_140819 [Selaginella
moellendorffii]
gi|300170387|gb|EFJ36988.1| hypothetical protein SELMODRAFT_140819 [Selaginella
moellendorffii]
Length = 130
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 7/71 (9%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AF+ +G+VT+A +IMD+ S+G+G VTF + EA+ A+ M+G L GR + VD
Sbjct: 29 AFANYGEVTEARVIMDRETGRSRGFGFVTFENDNEAKAAVQGMDGHELGGRSIRVD---- 84
Query: 65 SRRYNTDVPLA 75
Y +D P A
Sbjct: 85 ---YASDRPSA 92
>gi|255572313|ref|XP_002527095.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223533518|gb|EEF35258.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 657
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS+FG +T +++D + SKG G V FST EEA +AL EMNGK++ + L+V
Sbjct: 344 LKELFSEFGSITSCKVMLDH-QGVSKGSGFVAFSTPEEASRALKEMNGKMIGRKPLYV 400
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDG---RVLF 58
+ D FSQ QV + D+ K +S GYG V FS ++A A+ +N L+G R++F
Sbjct: 61 LYDLFSQIAQVVSVRVCRDQTKRSSLGYGYVNFSNPQDAANAMKALNFTPLNGKPIRIMF 120
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
++ + F+ FG V + +D SKGYG V F EE A++A++ ++G L+ + ++V
Sbjct: 148 LLHETFAAFGTVLSCKVAVDS-NGQSKGYGFVQFENEESAERAISFLDGMCLNDKQVYV 205
>gi|224128992|ref|XP_002328863.1| predicted protein [Populus trichocarpa]
gi|118482403|gb|ABK93124.1| unknown [Populus trichocarpa]
gi|222839293|gb|EEE77630.1| predicted protein [Populus trichocarpa]
Length = 131
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 47/73 (64%), Gaps = 3/73 (4%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDG---RVLF 58
+ DAFS FG+VT+A +I D+ S+G+G V++ + E A +AL+ M+G+ L G RV +
Sbjct: 52 LKDAFSGFGEVTEARVITDRDTGRSRGFGFVSYESTESASEALSAMDGQELGGRNIRVGY 111
Query: 59 VDNVRPSRRYNTD 71
+ R + YN++
Sbjct: 112 ATDKRQPQPYNSN 124
>gi|71993209|ref|NP_001021710.1| Protein PAB-1, isoform b [Caenorhabditis elegans]
gi|38422742|emb|CAE54916.1| Protein PAB-1, isoform b [Caenorhabditis elegans]
Length = 583
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
I D FS FG + + +D+ SKGYG V F TEE AQ A+ ++NG LL G+ +FV
Sbjct: 73 IYDTFSLFGNILSCKVAIDE-DGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGK 131
Query: 62 VRPSRRYNTDV 72
+P + N ++
Sbjct: 132 FQPRAQRNREL 142
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F +G +T A ++ D+ SKG+G V F EEA A+TEMN K++ + L+V
Sbjct: 274 FESYGNITSAKVMTDE-NGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYV 326
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
F++FG +T ++ +GK SKG+G V F+ EEA+ A+ ++ ++G L + R
Sbjct: 170 FAKFGNITSCEVMTVEGK--SKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQ 227
Query: 66 RR 67
++
Sbjct: 228 KK 229
>gi|71993203|ref|NP_001021709.1| Protein PAB-1, isoform a [Caenorhabditis elegans]
gi|3880681|emb|CAA21572.1| Protein PAB-1, isoform a [Caenorhabditis elegans]
Length = 646
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
I D FS FG + + +D+ SKGYG V F TEE AQ A+ ++NG LL G+ +FV
Sbjct: 136 IYDTFSLFGNILSCKVAIDE-DGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGK 194
Query: 62 VRPSRRYNTDV 72
+P + N ++
Sbjct: 195 FQPRAQRNREL 205
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F +G +T A ++ D+ SKG+G V F EEA A+TEMN K++ + L+V
Sbjct: 337 FESYGNITSAKVMTDE-NGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYV 389
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
F++FG +T ++ +GK SKG+G V F+ EEA+ A+ ++ ++G L + R
Sbjct: 233 FAKFGNITSCEVMTVEGK--SKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQ 290
Query: 66 RR 67
++
Sbjct: 291 KK 292
>gi|15822703|gb|AAL07518.1| RNA-binding protein precursor [Nicotiana tabacum]
Length = 277
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 42/66 (63%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFSQ+G V +A +IMD+ S+G+G ++F + EEA AL M+G+ L GR + V+
Sbjct: 56 LKEAFSQYGDVIEARVIMDRDTGRSRGFGFISFPSSEEAASALQAMDGQDLHGRRIRVNY 115
Query: 62 VRPSRR 67
RR
Sbjct: 116 ATEKRR 121
>gi|303668381|gb|ADM16300.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 121
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+A+AF+++G + K +I DK S+G+G V + E+A+ AL MNGK +DGR + VD
Sbjct: 21 LAEAFAKYGNIAKVDVIRDKETGRSRGFGFVKYDNAEDAKDALDGMNGKSVDGRTIRVDE 80
Query: 62 V 62
Sbjct: 81 A 81
>gi|198476543|ref|XP_001357388.2| GA10876 [Drosophila pseudoobscura pseudoobscura]
gi|198137744|gb|EAL34457.2| GA10876 [Drosophila pseudoobscura pseudoobscura]
Length = 625
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 38/62 (61%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
M+ F FG++ +IMD N SKGYG +T+ E+A+KAL ++NG L GR + V
Sbjct: 380 MLRGIFEPFGKIDAIQLIMDTETNRSKGYGFITYHNAEDAKKALEQLNGFELAGRPMKVG 439
Query: 61 NV 62
NV
Sbjct: 440 NV 441
>gi|15982739|gb|AAL09710.1| AT3g26420/F20C19_14 [Arabidopsis thaliana]
gi|19699180|gb|AAL90956.1| AT3g26420/F20C19_14 [Arabidopsis thaliana]
Length = 148
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 40/63 (63%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ DAF ++G + +A +++DK S+G+G +TF ++ +A+ MNG LDGR + VD
Sbjct: 23 LRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDK 82
Query: 62 VRP 64
+P
Sbjct: 83 AQP 85
>gi|440797930|gb|ELR19004.1| polyadenylate-binding protein family protein [Acanthamoeba
castellanii str. Neff]
Length = 462
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D GK SKGYG V + T E A A+ ++NGK+L+G++++V
Sbjct: 114 LYDTFSAFGNILSCKVVTD-GKGNSKGYGFVHYETSEAADSAIAKVNGKMLNGKIVYV 170
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 9 FGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FGQ+T ++ D K S+G+G V ++ E+A KA++EMNGK++ + ++V
Sbjct: 313 FGQITSCKVMSDD-KGNSRGFGFVCYTNPEDASKAVSEMNGKMVANKPIYV 362
>gi|780291|gb|AAA65224.1| polyadenylate-binding protein [Caenorhabditis elegans]
Length = 646
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
I D FS FG + + +D+ SKGYG V F TEE AQ A+ ++NG LL G+ +FV
Sbjct: 136 IYDTFSLFGNILSCKVAIDE-DGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGK 194
Query: 62 VRPSRRYNTDV 72
+P + N ++
Sbjct: 195 FQPRAQRNREL 205
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F +G +T A ++ D+ SKG+G V F EEA A+TEMN K++ + L+V
Sbjct: 337 FESYGNITSAKVMTDE-NGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYV 389
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
F++FG +T ++ +GK SKG+G V F+ EEA+ A+ ++ ++G L + R
Sbjct: 233 FAKFGNITSCEVMTVEGK--SKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQ 290
Query: 66 RR 67
++
Sbjct: 291 KK 292
>gi|325088692|gb|EGC42002.1| ribosome biogenesis [Ajellomyces capsulatus H88]
Length = 699
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 36/62 (58%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
FSQ + AT+++D SKGYG VTF+ E+A KAL E NG DGR L ++ P
Sbjct: 25 FSQSYPLKHATVVLDPQTKQSKGYGFVTFADHEDAAKALEEFNGSDFDGRKLKIEVAEPR 84
Query: 66 RR 67
R
Sbjct: 85 HR 86
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
++ F FG+V K +I +G S G+G V + A+KAL +NGK +DGR L VD
Sbjct: 131 QLSSLFRSFGKV-KHAVIPKRGTKHS-GFGFVVLRGWKNAEKALNAVNGKEVDGRTLAVD 188
>gi|156360993|ref|XP_001625306.1| predicted protein [Nematostella vectensis]
gi|156212133|gb|EDO33206.1| predicted protein [Nematostella vectensis]
Length = 584
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + FS +G ++ A ++ D K SKG+G V FS+ EEA KA+TEMNG++L + L+V
Sbjct: 313 LREEFSPYGTISSAKVMKDD-KGNSKGFGFVCFSSPEEATKAVTEMNGRILISKPLYVAL 371
Query: 62 VRPSRRYNTDVPLARLKIH 80
+ RR LA +H
Sbjct: 372 AQ--RREERKAQLAAQHMH 388
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + I D+ N KGYG V F TE+ A +A+ ++G LL+ + +FV
Sbjct: 117 LYDTFSAFGNILSCKIAQDELGN-PKGYGFVHFETEDAALEAIARVDGMLLNDKKVFV 173
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 7 SQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
++ G++ ++ D + SKG+G V+F T EEA++A+ +NGK + GR L+
Sbjct: 215 AEAGKIVSLKVMTDP-EGKSKGFGFVSFETPEEAEEAVNVLNGKEIGGRRLWA 266
>gi|302757806|ref|XP_002962326.1| hypothetical protein SELMODRAFT_78193 [Selaginella
moellendorffii]
gi|300169187|gb|EFJ35789.1| hypothetical protein SELMODRAFT_78193 [Selaginella
moellendorffii]
Length = 89
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDG---RVL 57
++ +AFS FG+V + I+ D+ SKGYG +T+ +E +AQ AL M+GK L+G RV
Sbjct: 10 IVQEAFSSFGEVREVRIVKDRETGKSKGYGFITYVSEADAQDALQAMDGKNLNGREIRVN 69
Query: 58 FVDNVRPSR 66
F PSR
Sbjct: 70 FAARDIPSR 78
>gi|71018821|ref|XP_759641.1| hypothetical protein UM03494.1 [Ustilago maydis 521]
gi|74701642|sp|Q4P8R9.1|PABP_USTMA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|46099399|gb|EAK84632.1| hypothetical protein UM03494.1 [Ustilago maydis 521]
Length = 651
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F+ FG +T I M S+G+G V +S EEA KA++EMNGK+LD R L+V
Sbjct: 346 LREEFAPFGAITSCKI-MRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYV 402
Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F++FG++T + D+ SKG+G V F EAQKA+ E++ G+ LFV
Sbjct: 247 FTKFGKITSCVLQRDE-DGKSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFV 299
>gi|343432668|ref|NP_001230348.1| RNA binding motif (RNP1, RRM) protein 3 [Sus scrofa]
Length = 156
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG +++ ++ D+ S+G+G +TF+ E A A+ MNG+ LDGR + VD+
Sbjct: 22 LEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAMNGESLDGRQIRVDH 81
Query: 62 VRPSRR 67
S R
Sbjct: 82 AGKSAR 87
>gi|12659074|gb|AAK01176.1| RNA-binding protein [Triticum aestivum]
Length = 183
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 42/63 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ DAF +FG+VT+ +++DK S+G+G VTF ++ ++A+ MNG LDGR + V+
Sbjct: 23 LKDAFGKFGRVTETKVVLDKFSGRSRGFGFVTFDDKKAMEEAVEAMNGIDLDGRNITVER 82
Query: 62 VRP 64
+P
Sbjct: 83 AQP 85
>gi|356517068|ref|XP_003527212.1| PREDICTED: uncharacterized protein LOC100777821 [Glycine max]
Length = 182
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 41/60 (68%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AFSQFG++ ++ +I D+ S+G+G VTF+TE+ + A+ MNG+ LDGR + V+ +
Sbjct: 27 AFSQFGEIVESKVINDRETGRSRGFGFVTFATEQAMRDAIEGMNGQNLDGRNITVNEAQS 86
>gi|20257707|gb|AAM16019.1| glycine-rich RNA binding protein [Zea mays]
Length = 154
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 42/63 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS +G+V ++ II+D+ S+G+G VTFS E+ + A+ MNGK LDGR + V+
Sbjct: 33 LNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSXEDAMRSAIEGMNGKELDGRNITVNE 92
Query: 62 VRP 64
+
Sbjct: 93 AQS 95
>gi|356558254|ref|XP_003547422.1| PREDICTED: cold-inducible RNA-binding protein-like [Glycine max]
Length = 86
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 38/55 (69%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
FS FG VT+A + +D KG+G V+F +E EA+KAL MNG+++ GR++ V+
Sbjct: 27 FSPFGLVTQADLALDPITKRPKGFGFVSFKSEIEAEKALRAMNGRIVSGRLILVE 81
>gi|312378306|gb|EFR24923.1| hypothetical protein AND_10202 [Anopheles darlingi]
Length = 645
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F+ +G +T A +++D+G+ SKG+G V FS +EA KA+TEMNG+++ + L+V
Sbjct: 315 FAPYGTITSAKVMLDEGR--SKGFGFVCFSAPDEATKAVTEMNGRIVGSKPLYV 366
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
D FS FG + + D+ K SKGYG V F TEE A ++ ++NG LL+ + +FV
Sbjct: 117 DTFSAFGNILSCKVAQDE-KGQSKGYGFVHFETEESANTSIEKVNGMLLNEKKVFV 171
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGK-LLDGRVLFV 59
+ + F ++G +T ++M GK S+G+G V F + A++A+ E+N K L DG+VL+V
Sbjct: 208 LHEMFEKYGSITSHRVMMKDGK--SRGFGFVAFENPDAAERAVQELNAKELSDGKVLYV 264
>gi|115454617|ref|NP_001050909.1| Os03g0681900 [Oryza sativa Japonica Group]
gi|31712074|gb|AAP68379.1| putative RNA-binding protein [Oryza sativa Japonica Group]
gi|108710427|gb|ABF98222.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113549380|dbj|BAF12823.1| Os03g0681900 [Oryza sativa Japonica Group]
gi|215692670|dbj|BAG88090.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215692827|dbj|BAG88216.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222625569|gb|EEE59701.1| hypothetical protein OsJ_12125 [Oryza sativa Japonica Group]
Length = 308
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ADAF +FG+V A I++++ +G+G VTFS E A+ EM+ + LDGR + V+
Sbjct: 23 LADAFRRFGKVVDAQIMLERHTQRHRGFGFVTFSDPEAVDSAIKEMHCQELDGRTISVNK 82
Query: 62 VRPSRRYNTD 71
P + NTD
Sbjct: 83 AEP--KMNTD 90
>gi|389744399|gb|EIM85582.1| RNA-binding domain-containing protein [Stereum hirsutum FP-91666
SS1]
Length = 262
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 39/57 (68%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
D FS+FG+V K TI+ D+ + S+G+G + ST EA+K + E+NG L+GR + VD
Sbjct: 93 DEFSRFGRVEKVTIVYDQRSDRSRGFGFIKMSTVAEAEKCIQELNGVDLNGRRIRVD 149
>gi|358367775|dbj|GAA84393.1| glycine-rich RNA-binding protein [Aspergillus kawachii IFO 4308]
Length = 117
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + FSQ+G + +A ++ D + S+G+G V F+++ EA A+ MN + DGRV+ VD
Sbjct: 18 LREGFSQYGTIEEAIVVKDHDTHRSRGFGFVRFASDAEADAAMNAMNNQEFDGRVIRVDK 77
Query: 62 VRPSR 66
SR
Sbjct: 78 ASESR 82
>gi|344250008|gb|EGW06112.1| Putative RNA-binding protein 3 [Cricetulus griseus]
Length = 169
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG +++ ++ D+ S+G+G +TF+ E A A+ MNG+ LDGR + VD+
Sbjct: 22 LEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDH 81
Query: 62 VRPSRR 67
S R
Sbjct: 82 AGKSAR 87
>gi|349803919|gb|AEQ17432.1| putative poly binding cytoplasmic 1 [Hymenochirus curtipes]
Length = 590
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV 170
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 2 IADAFSQFGQVTKATIIMD-KGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F ++G ++ D GK SKG+G V+F E+AQKA+ +MNGK ++G+ ++V
Sbjct: 207 LKEMFGKYGPALSVKVMTDDSGK--SKGFGFVSFERHEDAQKAVDDMNGKDMNGKAIYV 263
>gi|255691172|ref|ZP_05414847.1| RNA-binding protein [Bacteroides finegoldii DSM 17565]
gi|260623075|gb|EEX45946.1| hypothetical protein BACFIN_06178 [Bacteroides finegoldii DSM
17565]
Length = 99
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 41/63 (65%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + F++FG+V+ A +IMD+ S+G+ V +++EE QKA+ E+NG D +V+ V
Sbjct: 17 LTNLFAEFGEVSSAKVIMDRETGNSRGFAFVEMTSDEEGQKAIDELNGVEYDQKVISVSV 76
Query: 62 VRP 64
RP
Sbjct: 77 ARP 79
>gi|209734900|gb|ACI68319.1| Cold-inducible RNA-binding protein [Salmo salar]
gi|303657347|gb|ADM15872.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 114
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 40/59 (67%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+A+AFS++G ++K +IMD+ +G+G V + E+A+ A+ MNG+ LDGR + V+
Sbjct: 21 LAEAFSKYGNISKCDVIMDRETGRPRGFGFVKYDNPEDAKDAMDAMNGQSLDGRTIRVN 79
>gi|213513270|ref|NP_001133190.1| hyperosmotic glycine rich protein [Salmo salar]
gi|197632401|gb|ACH70924.1| hyperosmotic glycine rich protein [Salmo salar]
Length = 126
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 40/59 (67%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+A+AFS++G ++K +IMD+ +G+G V + E+A+ A+ MNG+ LDGR + V+
Sbjct: 21 LAEAFSKYGNISKCDVIMDRETGRPRGFGFVKYDNPEDAKDAMDAMNGQSLDGRTIRVN 79
>gi|388854914|emb|CCF51417.1| probable PAB1-mRNA polyadenylate-binding protein [Ustilago hordei]
Length = 648
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F+ FG +T I M S+G+G V +S EEA KA++EMNGK+LD R L+V
Sbjct: 344 LREEFAPFGTITSCKI-MRAPSGVSRGFGFVCYSVPEEANKAVSEMNGKMLDNRPLYV 400
Score = 41.2 bits (95), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F+ +G++T + D SKG+G V F EEAQKA+ E++ G+ LFV
Sbjct: 245 FTNYGKITSCVLQRDD-DGKSKGFGFVNFEDHEEAQKAVDELHDSDFHGQKLFV 297
>gi|148702008|gb|EDL33955.1| mCG116386, isoform CRA_e [Mus musculus]
Length = 179
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG +++ ++ D+ S+G+G +TF+ E A A+ MNG+ LDGR + VD+
Sbjct: 47 LEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDH 106
Query: 62 V 62
Sbjct: 107 A 107
>gi|120610816|ref|YP_970494.1| RNP-1-like RNA-binding protein [Acidovorax citrulli AAC00-1]
gi|120589280|gb|ABM32720.1| RNP-1-like RNA-binding protein [Acidovorax citrulli AAC00-1]
Length = 116
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
F++FG VT + I+ D+ SKG+G V S+ E+AQ A+T +NG +DGR + V+ RP
Sbjct: 23 FAEFGGVTSSKIMTDRETGRSKGFGFVEMSSAEDAQSAITGLNGLSVDGRSIVVNLARP 81
>gi|389633057|ref|XP_003714181.1| nuclear localization sequence binding protein [Magnaporthe oryzae
70-15]
gi|351646514|gb|EHA54374.1| nuclear localization sequence binding protein [Magnaporthe oryzae
70-15]
gi|440473688|gb|ELQ42470.1| 28 kDa ribonucleoprotein [Magnaporthe oryzae Y34]
gi|440486239|gb|ELQ66126.1| 28 kDa ribonucleoprotein [Magnaporthe oryzae P131]
Length = 486
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 37/60 (61%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
M+A+ F G VT A +I D+ SKG+G V F+T EEA+KA E G +DGR + VD
Sbjct: 254 MLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAEKAHGEKQGAFIDGREIKVD 313
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD--NVR 63
FS+ +V + ++ KG+G VTF++ E+A+ A ++NG+ ++GR +D R
Sbjct: 362 FSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSAFEQLNGQSINGRNCRLDYSTPR 421
Query: 64 PSR 66
P R
Sbjct: 422 PPR 424
>gi|624925|dbj|BAA05170.1| RNA-binding glycine rich protein [Nicotiana sylvestris]
gi|295393567|gb|ADG03639.1| RNA-binding glycine-rich protein [Nicotiana tabacum]
Length = 259
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 42/59 (71%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ +AFSQ G+V +A +IMD+ S+G+G V+F++ EEA ALT ++G+ L GR + V+
Sbjct: 56 LKEAFSQHGEVIEARVIMDRDTGRSRGFGFVSFTSTEEAASALTALDGQDLHGRQIRVN 114
>gi|260221864|emb|CBA30852.1| Putative RNA-binding protein rbpB [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 124
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
FS+FG+VT A ++MD+ SKG+ V ST AQ A+ +NG+ +DGR + V+ RP
Sbjct: 49 FSEFGEVTSAKVMMDRDTGRSKGFAFVEMSTPAFAQAAIDGLNGQSVDGRSIVVNLARP 107
>gi|119627672|gb|EAX07267.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_g [Homo sapiens]
Length = 338
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 39/56 (69%), Gaps = 2/56 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
D FS FG + ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 117 DTFSAFGNILSCKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 170
>gi|300121030|emb|CBK21412.2| unnamed protein product [Blastocystis hominis]
Length = 296
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 36/59 (61%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
M+ DAFSQ G++ I+ D+ S+G G V FST EE A++ MNG LDGR + V
Sbjct: 114 MLRDAFSQCGKIEHYKILTDRQTGRSRGMGIVKFSTREEMNNAISTMNGSTLDGRQIAV 172
Score = 41.2 bits (95), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 12/66 (18%)
Query: 17 IIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV-----------DNVRPS 65
I+ D+ +G+G V+FSTE+ KA+ E NG L++GR + V +NVR +
Sbjct: 34 IVYDRNTGRPRGFGFVSFSTEDGLNKAM-EQNGSLINGREIRVEVAKGSLGKNSENVRQN 92
Query: 66 RRYNTD 71
R YN +
Sbjct: 93 RNYNDE 98
>gi|119113388|ref|XP_309558.3| AGAP011092-PA [Anopheles gambiae str. PEST]
gi|116131767|gb|EAA05186.3| AGAP011092-PA [Anopheles gambiae str. PEST]
Length = 634
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F+ +G +T A +++D+G+ SKG+G V FS +EA KA+TEMNG+++ + L+V
Sbjct: 306 FAPYGTITSAKVMLDEGR--SKGFGFVCFSAPDEATKAVTEMNGRIVGSKPLYV 357
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGK-LLDGRVLFV 59
+ D F +FG +T ++ GK S+G+G V F E+A++A+ ++NGK L DG+VL+V
Sbjct: 199 LRDMFEKFGPITSHRVMTKDGK--SRGFGFVAFEKPEDAEEAVQKLNGKELSDGKVLYV 255
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
D FS FG + + D+ K SKGYG V F TEE A ++ ++NG LL+ + ++V
Sbjct: 108 DTFSAFGNILSCKVAQDE-KGQSKGYGFVHFETEESANTSIEKVNGMLLNEKKVYV 162
>gi|223647416|gb|ACN10466.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 193
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 39/59 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+A+AF+++G + K +I DK S+G+G V + E+A+ AL MNGK +DGR + VD
Sbjct: 21 LAEAFAKYGNIAKVDVIRDKETGRSRGFGFVKYDNAEDAKDALEGMNGKSVDGRTIRVD 79
>gi|392404677|ref|YP_006441289.1| RNP-1 like RNA-binding protein [Turneriella parva DSM 21527]
gi|390612631|gb|AFM13783.1| RNP-1 like RNA-binding protein [Turneriella parva DSM 21527]
Length = 141
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 34/60 (56%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AF FGQVT I+ D+ S+G+ V E AQ A+ EMNGK L GR L V+ RP
Sbjct: 20 AFEAFGQVTSVKIVRDRDTGRSRGFAFVEMEDGEGAQNAVAEMNGKDLKGRNLVVNEARP 79
>gi|195155759|ref|XP_002018768.1| GL25979 [Drosophila persimilis]
gi|194114921|gb|EDW36964.1| GL25979 [Drosophila persimilis]
Length = 289
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 40/70 (57%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
M+ F FG++ +IMD N SKGYG +T+ E+A+KAL ++NG L GR + V
Sbjct: 44 MLRGIFEPFGKIDAIQLIMDTETNRSKGYGFITYHNAEDAKKALEQLNGFELAGRPMKVG 103
Query: 61 NVRPSRRYNT 70
NV NT
Sbjct: 104 NVTERLDMNT 113
>gi|297736978|emb|CBI26179.3| unnamed protein product [Vitis vinifera]
Length = 156
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ AFSQFG+V+K I +K + G+ F+TEE AQ A+ M+GK GR +FV
Sbjct: 80 LKKAFSQFGEVSKVRIKRNKISSQPLGFAFAWFTTEESAQLAVKMMDGKFFHGRFVFVKI 139
Query: 62 VR--PSRRYNTDVP 73
+ PS+R+ P
Sbjct: 140 AKPGPSKRHVKAAP 153
>gi|241948533|ref|XP_002416989.1| ARS consensus binding protein, putative; poly(A)-binding protein,
putative; polyadenylate tail-binding protein, putative;
polyadenylate-binding protein, cytoplasmic and nuclear,
putative [Candida dubliniensis CD36]
gi|223640327|emb|CAX44577.1| ARS consensus binding protein, putative [Candida dubliniensis CD36]
Length = 627
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F FG +T A +++D SKG+G V F+T EEA KA+TEMN ++++G+ L+V
Sbjct: 351 LEEEFKSFGTITSAKVMVDDA-GKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYV 407
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 6 FSQFGQVTKATIIMDKGKN-TSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
F+ +G++T +I ++K ++ SKG+G V F + A KA+ E+N K ++G+ ++V +
Sbjct: 252 FAPYGKIT--SIYLEKDQDGKSKGFGFVNFENHDSAVKAVEELNDKEINGQKIYVGRAQK 309
Query: 65 SR 66
R
Sbjct: 310 KR 311
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
FS GQV+ + D S GY V + E+ +KA+ E+N ++GR
Sbjct: 71 FSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELNYTPIEGR 120
>gi|78185978|ref|YP_374021.1| RNA recognition motif-containing protein [Chlorobium luteolum DSM
273]
gi|78165880|gb|ABB22978.1| RNA-binding region RNP-1 (RNA recognition motif) [Chlorobium
luteolum DSM 273]
Length = 99
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 36/57 (63%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
DAFSQFGQV A IIMDK SKG+G V S++E + A+ MN + GR + V+
Sbjct: 28 DAFSQFGQVDSANIIMDKFSGRSKGFGFVDMSSDEAGRAAIEAMNEQEFKGRTIKVN 84
>gi|417396333|gb|JAA45200.1| Putative mrna cleavage and polyadenylation factor i complex
subunit rna15 [Desmodus rotundus]
Length = 158
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG +++ ++ D+ S+G+G +TF+ E A A+ MNG+ LDGR + VD+
Sbjct: 22 LEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDH 81
Query: 62 VRPSRR 67
S R
Sbjct: 82 AGKSAR 87
>gi|448519634|ref|XP_003868121.1| poly(A)-binding protein [Candida orthopsilosis Co 90-125]
gi|380352460|emb|CCG22686.1| poly(A)-binding protein [Candida orthopsilosis]
Length = 638
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F FG +T A +++D S+G+G V FST EEA KA+TEMN ++++G+ L+V
Sbjct: 361 LEEEFKPFGTITSAKVMVDDA-GKSRGFGFVCFSTPEEATKAITEMNQRMVNGKPLYV 417
Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
FS GQV+ + D S GY V + E+ +KA+ E+N L++ R
Sbjct: 81 FSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKFEDGEKAIDELNYSLIENR 130
>gi|194381714|dbj|BAG64226.1| unnamed protein product [Homo sapiens]
Length = 591
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 39/54 (72%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+T MNG+++ + L+V
Sbjct: 269 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTGMNGRIVATKPLYV 320
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R + V
Sbjct: 70 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVSV 125
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 162 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 218
>gi|340383337|ref|XP_003390174.1| PREDICTED: ELAV-like protein 3-like [Amphimedon queenslandica]
Length = 392
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 35/60 (58%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
FSQFG V +I DK S GYG V + + EEA+ A+ +MNG L+ + L V RPS
Sbjct: 44 FSQFGVVLSCKLIKDKSSGISLGYGFVNYGSAEEAEHAIQKMNGTTLESKTLKVSYARPS 103
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
++ FS FG +T +I D K YG V + E+A A+ +NG + DG+ L V
Sbjct: 327 LLYQLFSPFGAITSVNVIRDLKSGLCKRYGFVNMKSYEDACSAIMTLNGYVHDGKTLQVS 386
>gi|340375830|ref|XP_003386437.1| PREDICTED: polyadenylate-binding protein 1-like [Amphimedon
queenslandica]
Length = 618
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS+FG +T A I+ D+ + SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 318 FSKFGSITSAKIMTDEFGH-SKGFGFVCFSSPEEATKAVTEMNGRIVVSKPLYV 370
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
M+ D F ++G + A ++M G+ SKG+G V+F + E A A+ ++ +++GR ++
Sbjct: 210 MLYDVFEKYGSIVSA-VVMKDGEGLSKGFGFVSFESHEAASAAVQAVHNSIVNGRQVYC 267
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + + D G SKG+G V F +E A A+ ++NGKLL+ ++V
Sbjct: 119 LYDTFSAFGNILSCKVATD-GNRHSKGFGFVHFDEQEAADLAIEKVNGKLLNDMKVYVGK 177
Query: 62 VRPSR 66
P +
Sbjct: 178 FIPRK 182
>gi|291514454|emb|CBK63664.1| RNA-binding proteins (RRM domain) [Alistipes shahii WAL 8301]
Length = 116
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + F QFG+V A +I D+ S+G+G V EEE QKA+ ++NG +G+ + V+
Sbjct: 17 LGNLFMQFGEVASANVITDRETGRSRGFGFVEMPNEEEGQKAIDQLNGTSFEGQTITVNV 76
Query: 62 VRP 64
RP
Sbjct: 77 ARP 79
>gi|431893576|gb|ELK03439.1| Putative RNA-binding protein 3 [Pteropus alecto]
Length = 213
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG +++ ++ D+ S+G+G +TF+ E A A+ MNG+ LDGR + VD+
Sbjct: 79 LEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDH 138
Query: 62 VRPSRR 67
S R
Sbjct: 139 AGKSAR 144
>gi|221220658|gb|ACM08990.1| Cold-inducible RNA-binding protein [Salmo salar]
gi|304376965|gb|ACI70202.2| Cold-inducible RNA-binding protein [Salmo salar]
Length = 161
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 39/58 (67%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+A+AFS++G ++K +IMD+ +G+G V + E+A+ A+ MNG+ LDGR + V
Sbjct: 21 LAEAFSKYGNISKCDVIMDRETGRPRGFGFVKYDNPEDAKDAMDAMNGQSLDGRTIRV 78
>gi|198285593|gb|ACH85335.1| hyperosmotic glycine rich protein-like [Salmo salar]
gi|221219546|gb|ACM08434.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 160
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 39/58 (67%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+A+AFS++G ++K +IMD+ +G+G V + E+A+ A+ MNG+ LDGR + V
Sbjct: 21 LAEAFSKYGNISKCDVIMDRETGRPRGFGFVKYDNPEDAKDAMDAMNGQSLDGRTIRV 78
>gi|148227710|ref|NP_001085351.1| embryonic polyadenylate-binding protein B [Xenopus laevis]
gi|82236619|sp|Q6GR16.1|EPABB_XENLA RecName: Full=Embryonic polyadenylate-binding protein B;
Short=Embryonic poly(A)-binding protein B; Short=ePAB-B;
Short=ePABP-B; AltName: Full=XePABP-B
gi|49257242|gb|AAH71118.1| MGC81363 protein [Xenopus laevis]
Length = 629
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS FG ++MD S+G+G V + EEAQKA+TEMNGK ++GR+++V
Sbjct: 207 LKEIFSAFGNTLSVKVMMDNS-GRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYV 263
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS +G +T ++ + G SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPYGTITSTKVMTEGGH--SKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + ++ D+ S+GYG V F T+E A +A+ MNG LL+ R +FV +
Sbjct: 115 LYDTFSAFGDILSCKVVCDE--YGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGH 172
Query: 62 VRPSRR 67
+ SRR
Sbjct: 173 FK-SRR 177
>gi|426257071|ref|XP_004022158.1| PREDICTED: putative RNA-binding protein 3 isoform 1 [Ovis aries]
gi|426257073|ref|XP_004022159.1| PREDICTED: putative RNA-binding protein 3 isoform 2 [Ovis aries]
gi|426257075|ref|XP_004022160.1| PREDICTED: putative RNA-binding protein 3 isoform 3 [Ovis aries]
gi|426257077|ref|XP_004022161.1| PREDICTED: putative RNA-binding protein 3 isoform 4 [Ovis aries]
gi|426257079|ref|XP_004022162.1| PREDICTED: putative RNA-binding protein 3 isoform 5 [Ovis aries]
Length = 160
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG +++ ++ D+ S+G+G +TF+ E A A+ MNG+ LDGR + VD+
Sbjct: 22 LEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAMNGESLDGRQIRVDH 81
Query: 62 VRPSRR 67
S R
Sbjct: 82 AGKSAR 87
>gi|390597906|gb|EIN07305.1| polyadenylate binding protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 668
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ DAF FG +T A ++ +G TSKG+G V FS+ +EA KA+ EMN K++ + L+V
Sbjct: 352 LRDAFEPFGAITSAKVMRTEG-GTSKGFGFVCFSSPDEATKAVAEMNNKMMGSKPLYV 408
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F+ FG VT A + D+ + S+G+G V F T EEAQKA+ ++ GR LFV
Sbjct: 253 FTPFGNVTSAVLQRDE-EGRSRGFGFVNFETHEEAQKAVDTLHDSDFKGRKLFV 305
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F+ FG V + D+ SKGYG V + T E A+ A+ +NG LL+ + ++V
Sbjct: 156 LHDTFAAFGNVLSCKVATDE-MGRSKGYGFVHYETNEAAESAIKAVNGMLLNDKKVYV 212
>gi|157817831|ref|NP_001099621.1| poly(A) binding protein, cytoplasmic 2 [Rattus norvegicus]
gi|149017412|gb|EDL76463.1| poly A binding protein, cytoplasmic 2 (predicted) [Rattus
norvegicus]
Length = 630
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F +FGQV ++ D+G SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 211 FGRFGQVLSVKVMTDEG-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 263
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
D FS FG + ++ D+ N SKG+G V F TEE A++A+ +MNG LL+ R +FV
Sbjct: 117 DTFSAFGNILSCKVVCDE--NGSKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFV 170
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T ++ + G+ SKG+G V FS+ EEA KA++EMNG+++ + L+V
Sbjct: 314 FSPFGTITSTKVMTEGGR--SKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYV 365
>gi|410988519|ref|XP_004000531.1| PREDICTED: putative RNA-binding protein 3 [Felis catus]
Length = 160
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG +++ ++ D+ S+G+G +TF+ E A A+ MNG+ LDGR + VD+
Sbjct: 22 LEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDH 81
Query: 62 VRPSRR 67
S R
Sbjct: 82 AGKSAR 87
>gi|260944998|ref|XP_002616797.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
gi|238850446|gb|EEQ39910.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
Length = 620
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 42/60 (70%), Gaps = 3/60 (5%)
Query: 1 MIADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
M+ + F FG +T A +++D+ GK SKG+G V FS EEA KA+TEMN +++ G+ L+V
Sbjct: 350 MLEEEFKPFGTITSAKVMVDETGK--SKGFGFVCFSAPEEATKAITEMNQRMVLGKPLYV 407
Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRV--LF 58
++ + FS GQV+ + D S GY V + E+ ++AL ++N L+DGR +
Sbjct: 66 VLYEIFSPLGQVSSIRVCRDAVTKKSLGYAYVNYHKHEDGERALEQLNYSLIDGRPCRIM 125
Query: 59 VDNVRPSRRYNTD 71
PS R N D
Sbjct: 126 WSQRDPSLRRNGD 138
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG++ + D+ SK +G V + T E A A+ +NG L+ R +FV
Sbjct: 155 LHDTFSAFGRILSCKVATDE-HGRSKCFGFVHYETAEAADAAIENVNGMSLNDREVFV 211
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+A F +G++T D + SKG+G + F + A KA+ E+N K ++G+ ++V
Sbjct: 248 LAAMFEPYGKITSLYFEKDS-EGKSKGFGFINFENHDAAVKAVEELNDKEVNGQKIYVGR 306
Query: 62 VRPSR 66
+ R
Sbjct: 307 AQKKR 311
>gi|328715672|ref|XP_001946271.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 964
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 39/54 (72%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG + A ++MD G+ SKG+G V FS+ EEA KA+T+MNG+++ + L+V
Sbjct: 621 FSAFGTIKSAKVMMDDGR--SKGFGFVYFSSPEEATKAVTDMNGRIVGTKPLYV 672
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNG-KLLDGRVLFVDNV 62
+ F ++G +T + M K +S+G+G V F +EA+KA+TE++G K +G+ +V+
Sbjct: 515 EMFKKYGTITSCKV-MFKDDGSSRGFGFVAFEDPKEAEKAVTELHGKKSPEGKTYYVNRA 573
Query: 63 R 63
+
Sbjct: 574 Q 574
Score = 37.7 bits (86), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 26/34 (76%)
Query: 26 SKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
SKGYG V F T++ A +++ ++NG LL+G+ +FV
Sbjct: 443 SKGYGFVHFETKQSATQSIEKVNGMLLNGKKVFV 476
>gi|260656096|pdb|2K8G|A Chain A, Solution Structure Of Rrm2 Domain Of Pabp1
Length = 95
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 28 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 83
>gi|149744489|ref|XP_001493789.1| PREDICTED: putative RNA-binding protein 3-like isoform 1 [Equus
caballus]
Length = 156
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG +++ ++ D+ S+G+G +TF+ E A A+ MNG+ LDGR + VD+
Sbjct: 22 LEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDH 81
Query: 62 VRPSRR 67
S R
Sbjct: 82 AGKSAR 87
>gi|13785947|gb|AAK39523.1| RNA-binding motif protein 3 [Rattus norvegicus]
Length = 127
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG +++ ++ D+ S+G+G +TF+ E A A+ MNG+ LDGR + VD+
Sbjct: 22 LEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDH 81
Query: 62 VRPSRR 67
S R
Sbjct: 82 AGKSAR 87
>gi|281353659|gb|EFB29243.1| hypothetical protein PANDA_006181 [Ailuropoda melanoleuca]
Length = 148
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG +++ ++ D+ S+G+G +TF+ E A A+ MNG+ LDGR + VD+
Sbjct: 22 LEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDH 81
Query: 62 VRPSRR 67
S R
Sbjct: 82 AGKSAR 87
>gi|355709043|gb|AES03462.1| poly binding protein, cytoplasmic 1 [Mustela putorius furo]
Length = 230
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 89 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 144
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLL 52
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L
Sbjct: 181 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKEL 230
>gi|357144334|ref|XP_003573255.1| PREDICTED: uncharacterized protein LOC100824407 [Brachypodium
distachyon]
Length = 226
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 42/63 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ DAF +FG+VT+ +++DK S+G+G VTF ++ ++A+ MNG LDGR + V+
Sbjct: 23 LKDAFGKFGRVTETKVVLDKYSGRSRGFGFVTFDDKKAMEEAVEAMNGIDLDGRNITVER 82
Query: 62 VRP 64
+P
Sbjct: 83 AQP 85
>gi|317106693|dbj|BAJ53194.1| JHL03K20.3 [Jatropha curcas]
Length = 642
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS+FG +T ++ D SKG G V +ST EEA KALTEMNGK++ + L+V
Sbjct: 327 LKELFSEFGTITSCKVMRDP-NGVSKGSGFVAYSTAEEASKALTEMNGKMIVSKPLYV 383
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + + D S GYG V F EE A+ A+ ++NG LL+ + ++V
Sbjct: 133 LHDTFSAFGNILSCKVATDSA-GQSLGYGFVQFDNEESAKNAIDKLNGMLLNDKQVYV 189
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F ++G +T A ++ D G S+ +G V F ++A +++ +NGK D + +V
Sbjct: 228 FGEYGAITSAVVMRD-GDGKSRCFGFVNFENPDDAARSVEALNGKTFDEKEWYV 280
>gi|213409529|ref|XP_002175535.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212003582|gb|EEB09242.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 621
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++ D+ N SKG+G V +S EEA KA+ EMN ++L G+ L+V
Sbjct: 373 FSAFGTITSAKVMTDEN-NKSKGFGFVCYSNPEEATKAIAEMNQRMLAGKPLYV 425
Score = 42.0 bits (97), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG++ + +D+ N SKGYG V F + + A A+ +NG LL+ + ++V
Sbjct: 173 LHDTFSAFGKILSCKVAVDELGN-SKGYGFVHFDSVDSANAAIEHVNGMLLNDKKVYV 229
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
M+ + F+ G V + D S GY V F E+ +KAL E+N L+ GR
Sbjct: 84 MLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGR 138
>gi|115454539|ref|NP_001050870.1| Os03g0670700 [Oryza sativa Japonica Group]
gi|108710321|gb|ABF98116.1| retrotransposon protein, putative, Ty1-copia subclass, expressed
[Oryza sativa Japonica Group]
gi|113549341|dbj|BAF12784.1| Os03g0670700 [Oryza sativa Japonica Group]
Length = 196
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AFS +G++ + II D+ S+G+G VTFS+E+ + A+ MNGK LDGR + V+ +
Sbjct: 27 AFSTYGEILDSKIINDRETGRSRGFGFVTFSSEQSMRDAIEGMNGKELDGRNITVNEAQ- 85
Query: 65 SRR 67
SRR
Sbjct: 86 SRR 88
>gi|115488680|ref|NP_001066827.1| Os12g0502200 [Oryza sativa Japonica Group]
gi|77555842|gb|ABA98638.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113649334|dbj|BAF29846.1| Os12g0502200 [Oryza sativa Japonica Group]
gi|125579440|gb|EAZ20586.1| hypothetical protein OsJ_36195 [Oryza sativa Japonica Group]
gi|215694288|dbj|BAG89281.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215708787|dbj|BAG94056.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 258
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 40/57 (70%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
D F+ +GQV +A II D+ S+G+G +T+++ EEA A+T ++GK LDGR + V+
Sbjct: 49 DTFANYGQVIEAKIINDRETGRSRGFGFITYASSEEASAAITALDGKDLDGRNIRVN 105
>gi|338729124|ref|XP_003365829.1| PREDICTED: putative RNA-binding protein 3-like isoform 2 [Equus
caballus]
Length = 135
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG +++ ++ D+ S+G+G +TF+ E A A+ MNG+ LDGR + VD+
Sbjct: 22 LEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDH 81
Query: 62 VRPSRR 67
S R
Sbjct: 82 AGKSAR 87
>gi|57899926|dbj|BAD87838.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 203
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
+ DAFSQ G + + +I SKGYG V F++E+EA AL +M G+++DGR
Sbjct: 140 LKDAFSQHGHIIQVKVICHPVTGKSKGYGFVKFASEDEAAAALHKMGGEVIDGR 193
>gi|345316987|ref|XP_003429815.1| PREDICTED: embryonic polyadenylate-binding protein A-like
[Ornithorhynchus anatinus]
Length = 540
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS +G +T A ++ + G SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 267 FSPYGTITSAKVMTESGH--SKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 318
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + ++ D+ + S+G+G V F T E A +A++ MNG LL+ R +
Sbjct: 117 DTFSTFGNILSCKVVCDE--HGSRGFGFVHFETREAASQAISTMNGMLLNDRKVGAQPCC 174
Query: 64 PSRR 67
P+ R
Sbjct: 175 PAGR 178
>gi|2331133|gb|AAB66885.1| glycine-rich protein [Oryza sativa Japonica Group]
Length = 161
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 41/62 (66%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AFS +G++ ++ II D+ S+G+G VTFS+E+ + A+ MNGK LDGR + V+ +
Sbjct: 27 AFSTYGEILESKIINDRETGRSRGFGFVTFSSEQAMRDAIEGMNGKELDGRNITVNEAQS 86
Query: 65 SR 66
R
Sbjct: 87 RR 88
>gi|1395193|dbj|BAA12064.1| RNA-binding protein RZ-1 [Nicotiana sylvestris]
gi|1435062|dbj|BAA06012.1| RNA binding protein RZ-1 [Nicotiana sylvestris]
Length = 209
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 39/65 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ DAF +FG + A +++DK S+G+G VTF + + A+ MNG LDGR + VD
Sbjct: 22 LKDAFEKFGNLVDAKVVLDKFSGRSRGFGFVTFDEKRAMEDAIEAMNGVDLDGRDITVDK 81
Query: 62 VRPSR 66
+P +
Sbjct: 82 AQPDK 86
>gi|400260942|pdb|4F25|A Chain A, Crystal Structure Of The Second Rrm Domain Of Human
Pabpc1 At Ph 6.0
gi|400260943|pdb|4F26|A Chain A, Crystal Structure Of The Second Rrm Domain Of Human
Pabpc1 A Ph 9.0
Length = 115
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 22 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 77
>gi|169244425|gb|ACA50486.1| glycine-rich RNA binding protein [Oryza sativa Japonica Group]
gi|306415963|gb|ADM86856.1| glycine-rich RNA binding protein [Oryza sativa Japonica Group]
gi|385718874|gb|AFI71864.1| Glycin-rich RNA binding protein [Oryza sativa]
Length = 161
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 41/62 (66%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AFS +G++ ++ II D+ S+G+G VTFS+E+ + A+ MNGK LDGR + V+ +
Sbjct: 27 AFSTYGEILESKIINDRETGRSRGFGFVTFSSEQAMRDAIEGMNGKELDGRNITVNEAQS 86
Query: 65 SR 66
R
Sbjct: 87 RR 88
>gi|125537516|gb|EAY84004.1| hypothetical protein OsI_39235 [Oryza sativa Indica Group]
Length = 161
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 41/62 (66%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AFS +G++ ++ II D+ S+G+G VTFS+E+ + A+ MNGK LDGR + V+ +
Sbjct: 27 AFSTYGEILESKIINDRETGRSRGFGFVTFSSEQAMRDAIEGMNGKELDGRNITVNEAQS 86
Query: 65 SR 66
R
Sbjct: 87 RR 88
>gi|189339246|ref|NP_446148.1| putative RNA-binding protein 3 [Rattus norvegicus]
gi|149028410|gb|EDL83795.1| RNA binding motif protein 3, isoform CRA_a [Rattus norvegicus]
gi|149028411|gb|EDL83796.1| RNA binding motif protein 3, isoform CRA_a [Rattus norvegicus]
Length = 156
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG +++ ++ D+ S+G+G +TF+ E A A+ MNG+ LDGR + VD+
Sbjct: 22 LEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDH 81
Query: 62 VRPSRR 67
S R
Sbjct: 82 AGKSAR 87
>gi|423302507|ref|ZP_17280529.1| hypothetical protein HMPREF1057_03670 [Bacteroides finegoldii
CL09T03C10]
gi|408470383|gb|EKJ88917.1| hypothetical protein HMPREF1057_03670 [Bacteroides finegoldii
CL09T03C10]
Length = 99
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 41/63 (65%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + F++FG+V+ A +IMD+ S+G+ V +++EE QKA+ E+NG D +V+ V
Sbjct: 17 LTNLFAEFGEVSSAKVIMDRETGKSRGFAFVEMTSDEEGQKAIDELNGVEYDQKVISVSV 76
Query: 62 VRP 64
RP
Sbjct: 77 ARP 79
>gi|444518692|gb|ELV12325.1| Putative RNA-binding protein 3 [Tupaia chinensis]
Length = 154
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG +++ ++ D+ S+G+G +TF+ E A A+ MNG+ LDGR + VD+
Sbjct: 22 LEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDH 81
Query: 62 VRPSRR 67
S R
Sbjct: 82 AGKSAR 87
>gi|149244358|ref|XP_001526722.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|158514320|sp|A5DW14.1|PABP_LODEL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|146449116|gb|EDK43372.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 661
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F FG +T + +++D SKG+G V FST EEA KA+TEMN ++++G+ L+V
Sbjct: 367 LEEEFKPFGTITSSKVMVDDA-GKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYV 423
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG++ + D SK +G V + TEE AQ A+ +NG LL+ R ++V
Sbjct: 171 LHDTFSAFGKILSVKVATDD-LGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYV 227
Score = 41.2 bits (95), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 6 FSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
F+ FG++T +I ++K + SKG+G V F E A KA+ E+N K ++G+ ++V +
Sbjct: 268 FAPFGKIT--SIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQK 325
Query: 65 SRR 67
R
Sbjct: 326 KRE 328
>gi|357119205|ref|XP_003561336.1| PREDICTED: uncharacterized protein LOC100827239 [Brachypodium
distachyon]
Length = 314
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AF +FG+V A I++++ N +G+G VTFS + A++EM+ K LDGR + V+
Sbjct: 23 LEEAFRRFGKVVDAQIMLERHTNRHRGFGFVTFSDPRAVESAISEMHTKELDGRTISVNR 82
Query: 62 VRPSRRYNTD 71
P + NTD
Sbjct: 83 AEP--KMNTD 90
>gi|350538645|ref|NP_001233728.1| RNA-binding motif 3 [Cricetulus griseus]
gi|189170130|gb|ACD80090.1| RNA-binding motif 3 [Cricetulus griseus]
Length = 156
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG +++ ++ D+ S+G+G +TF+ E A A+ MNG+ LDGR + VD+
Sbjct: 22 LEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDH 81
Query: 62 VRPSRR 67
S R
Sbjct: 82 AGKSAR 87
>gi|301764797|ref|XP_002917810.1| PREDICTED: putative RNA-binding protein 3-like isoform 1
[Ailuropoda melanoleuca]
Length = 156
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG +++ ++ D+ S+G+G +TF+ E A A+ MNG+ LDGR + VD+
Sbjct: 22 LEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDH 81
Query: 62 VRPSRR 67
S R
Sbjct: 82 AGKSAR 87
>gi|193650237|ref|XP_001943392.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 650
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 39/54 (72%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG + A ++MD G+ SKG+G V FS+ EEA KA+T+MNG+++ + L+V
Sbjct: 307 FSAFGTIKSAKVMMDDGR--SKGFGFVYFSSPEEATKAVTDMNGRIVGTKPLYV 358
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
D FS FG + + D+ N SKGYG V F T++ A +++ ++NG LL+G+ +FV
Sbjct: 108 DTFSAFGNILSCKVAQDETGN-SKGYGFVHFETKQSATQSIEKVNGMLLNGKKVFV 162
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNG-KLLDGRVLFVDNV 62
+ F ++G +T + M K +S+G+G V F +EA+KA+TE++G K +G+ +V+
Sbjct: 201 EMFKKYGTITSCKV-MFKDDGSSRGFGFVAFEDPKEAEKAVTELHGKKSPEGKTYYVNRA 259
Query: 63 R 63
+
Sbjct: 260 Q 260
>gi|167384180|ref|XP_001736837.1| ribonucleoprotein, chloroplast [Entamoeba dispar SAW760]
gi|165900615|gb|EDR26908.1| ribonucleoprotein, chloroplast, putative [Entamoeba dispar
SAW760]
Length = 320
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ D F +FG+V +IM K +SKG+G V F TEE AQKAL E N ++L GR + VD
Sbjct: 19 LKDFFERFGKVVDV-VIMKKYDGSSKGFGYVEFDTEESAQKALREGNNEMLRGRNIRVD 76
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 15 ATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
A+++ DK N SKGYG V F + A+ + N L++ R + V
Sbjct: 261 ASVVYDKDTNKSKGYGFVVFDNSSDQHIAIEQFNNYLVECRKIMV 305
>gi|295414050|gb|ADG08184.1| cytoplasmic poly(A) binding protein, partial [Schmidtea
mediterranea]
Length = 491
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F FG +T A ++ D N SKG+G V FS EEA KA+TEMNGK+ + L+V
Sbjct: 118 FVVFGNITSAKVMTD-SNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYV 170
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F +FG++T A +++D+ GK SKG+G V F E A+ A+ +NGK+ R L+V
Sbjct: 10 LREMFLEFGEITSAKVMIDENGK--SKGFGFVCFKDSETAESAVKALNGKMFKDRQLYV 66
>gi|402697293|gb|AFQ90834.1| polyA-binding protein cytoplasmic 1, partial [Oscaecilia
ochrocephala]
Length = 177
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 12 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVXFETQEAAERAIEKMNGMLLNDRKVFV 67
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + F ++G ++ D+ SKG+G V+F E+AQKA+ MNGK L+G+ ++V
Sbjct: 104 LKEVFGKYGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDXMNGKELNGKXIYVG- 161
Query: 62 VRPSRRYNTDVPLAR 76
R ++ L R
Sbjct: 162 -RAQKKVERQTELKR 175
>gi|145349140|ref|XP_001418998.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579228|gb|ABO97291.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 572
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV- 62
D F+QFG +T A + MD G+ SKGYG V F T+E AQ A+ +NG L+ + ++V
Sbjct: 143 DTFAQFGTITSAKVAMD-GQGNSKGYGFVQFETQEAAQAAIDNVNGMELNDKQVYVGPFQ 201
Query: 63 RPSRRYNT 70
R + R NT
Sbjct: 202 RRAERSNT 209
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F +FG +T ++ D S+G V FS+ +EA +A+TEMNGK++ + L+V
Sbjct: 338 FKEFGTITSCRVMRD-ASGVSRGSAFVAFSSPDEATRAVTEMNGKMVGAKPLYV 390
>gi|384496545|gb|EIE87036.1| hypothetical protein RO3G_11747 [Rhizopus delemar RA 99-880]
Length = 616
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 40/54 (74%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS +G +T A ++ D+ K TSKG+G V FS+ +EA KA+TEMNG+++ + ++V
Sbjct: 343 FSVYGVITSAKVMCDE-KGTSKGFGFVCFSSPDEATKAVTEMNGRMIGSKPIYV 395
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + I +D+ N SKGYG V + TEE A A+ ++G LL+ + ++V
Sbjct: 143 LHDTFSAFGNILSCKIALDESGN-SKGYGFVHYETEEAADNAIKHVDGMLLNDKKVYVGR 201
Query: 62 VRPSRRYNTDVPLARLKI 79
P + + R K
Sbjct: 202 HIPRKERQAKIEQIRAKF 219
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ FS+FG +T A + D+ + SKG+G + F E+A KA+ +N +G+ L+V
Sbjct: 238 EMFSKFGPITSALVQTDE-EGKSKGFGFINFENYEDAHKAVDTLNETEHNGKTLYV 292
>gi|321466794|gb|EFX77787.1| polyadenylate binding protein, cytoplasmic 1 [Daphnia pulex]
Length = 574
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + + D+ N SKGYG V F TEE A A+T++NG LL+G+ +FV
Sbjct: 118 DTFSAFGNILSCKVAQDEAGN-SKGYGFVHFETEESAVNAITKVNGMLLNGKKVFVGRFI 176
Query: 64 PSR 66
P +
Sbjct: 177 PRK 179
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F+ +G +T A ++ + G+N G+G V FS+ EEA KA+TEMNG++L + L+V
Sbjct: 316 FAPYGTITSAKVMTEGGRNKG-GFGFVCFSSPEEATKAVTEMNGRILVSKPLYV 368
Score = 41.2 bits (95), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 4 DAFSQFGQVTKATIIM-DKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ FS++G+VT ++ D GK S+G+G V + + A++A +M+ K ++G+ LFV
Sbjct: 211 ECFSKYGKVTSHKVMSSDDGK--SRGFGFVCYEDPDAAERACDDMHAKDMNGKTLFV 265
>gi|297802026|ref|XP_002868897.1| hypothetical protein ARALYDRAFT_490700 [Arabidopsis lyrata subsp.
lyrata]
gi|297314733|gb|EFH45156.1| hypothetical protein ARALYDRAFT_490700 [Arabidopsis lyrata subsp.
lyrata]
Length = 164
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 37/58 (63%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
FSQFG V + II D+ S+G+G VTF E+ + A+ EMNGK LDGR + V+ +
Sbjct: 26 FSQFGDVLDSKIINDRETGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRTITVNEAQ 83
>gi|18103931|emb|CAC83314.1| glycine rich RNA binding protein [Oryza sativa Indica Group]
Length = 194
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 41/62 (66%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AFS +G++ ++ II D+ S+G+G VTFS+E+ + A+ MNGK LDGR + V+ +
Sbjct: 27 AFSTYGEILESKIINDRETGRSRGFGFVTFSSEQAMRDAIEGMNGKELDGRNITVNEAQS 86
Query: 65 SR 66
R
Sbjct: 87 RR 88
>gi|351704535|gb|EHB07454.1| Polyadenylate-binding protein 1 [Heterocephalus glaber]
Length = 281
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+ EMNG+ + + L+V
Sbjct: 110 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVKEMNGRTVATKPLYV 161
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 18 IMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+M SKG+ V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 18 VMTDESGKSKGFRFVSFERHEDAQKAVDEMNGKELNGKQIYV 59
>gi|293335932|ref|NP_001168160.1| uncharacterized protein LOC100381912 [Zea mays]
gi|223946377|gb|ACN27272.1| unknown [Zea mays]
gi|414872130|tpg|DAA50687.1| TPA: hypothetical protein ZEAMMB73_997132 [Zea mays]
Length = 297
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ DAF +FG+V A I++++ N +G+G VTF A+ EM+G+ +DGR + V+
Sbjct: 23 LEDAFGRFGKVVDAQIMVERHTNRHRGFGFVTFEDRRAVDSAIKEMHGQEIDGRTISVNK 82
Query: 62 VRPSRRYNTD 71
P + NTD
Sbjct: 83 AEP--KMNTD 90
>gi|219130188|ref|XP_002185253.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403432|gb|EEC43385.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 605
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 38/59 (64%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
M+ D F+ G +T A ++ D S+G+G V +ST EE+ +A+ EMNGKL+ + +FV
Sbjct: 342 MLRDEFAVMGTITSARVMKDAKDGRSRGFGFVCYSTPEESTRAVNEMNGKLIANKPIFV 400
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ S GYG V + T E A A+ +++G L+DG+ + V
Sbjct: 143 LYDTFSLFGNILSCKVVTDREGGVSMGYGYVHYETAEAANAAIEKLDGMLIDGQEVQV 200
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGK----LLDG 54
F+QFG+V AT+ + N + G+G + F+ E A A+ +NGK LDG
Sbjct: 236 FAQFGEVLSATVSRED-TNQTLGFGFINFAEHESAVAAVEALNGKEYTTTLDG 287
>gi|6754972|ref|NP_035163.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
gi|473092|emb|CAA53572.1| polyA binding protein, testis-enriched isoform [Mus musculus]
gi|29835142|gb|AAH51134.1| Poly(A) binding protein, cytoplasmic 2 [Mus musculus]
gi|148678113|gb|EDL10060.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
Length = 628
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F +FGQ+ ++ D+G SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 211 FGRFGQILSVKVMTDEG-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 263
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
D FS FG + ++ D+ N SKG+G V F TEE A++A+ +MNG LL+ R +FV
Sbjct: 117 DTFSAFGNILSCKVVSDE--NGSKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFV 170
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T ++ + G+ SKG+G V FS+ EEA KA++EMNG+++ + L+V
Sbjct: 314 FSPFGTITSTKVMTEGGR--SKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYV 365
>gi|356563602|ref|XP_003550050.1| PREDICTED: multiple RNA-binding domain-containing protein 1-like
[Glycine max]
Length = 160
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ FS+FG+VT + +DK S G+ + F EE AQ A+ EMNGK GR ++V
Sbjct: 84 LMKVFSEFGEVTLIQLPIDKESGQSLGFAYIWFVKEESAQLAVLEMNGKFFYGRFIYVTI 143
Query: 62 VRP 64
+P
Sbjct: 144 AKP 146
>gi|417396785|gb|JAA45426.1| Putative mrna cleavage and polyadenylation factor i complex
subunit rna15 [Desmodus rotundus]
Length = 190
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG +++ ++ D+ S+G+G +TF+ E A A+ MNG+ LDGR + VD+
Sbjct: 22 LEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDH 81
Query: 62 VRPSRR 67
S R
Sbjct: 82 AGKSAR 87
>gi|393245425|gb|EJD52935.1| polyadenylate binding protein [Auricularia delicata TFB-10046 SS5]
Length = 665
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F FG +T ++ D+ KNTSKG+G V FS+ +EA KA++EMN K++ + L+V
Sbjct: 351 FEPFGTITSCKVMRDE-KNTSKGFGFVCFSSPDEATKAVSEMNNKMIGSKPLYV 403
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D F+ FG V + D+ N SKGYG V + T E A+ A+ +NG LL+ + +FV +
Sbjct: 151 LHDTFAAFGNVLSCKVATDEHGN-SKGYGFVHYETAEAAENAIKSVNGMLLNDKKVFVGH 209
Query: 62 VRPSRRYNTDV 72
P + + +
Sbjct: 210 HIPRKERQSKI 220
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F +FG +T A + D+ + S+G+G V F + E+A A+ ++ ++GR L+V
Sbjct: 248 FGKFGNITSAALSKDE-EGKSRGFGFVNFESHEQAAAAVETLHDTEINGRKLYV 300
>gi|395506976|ref|XP_003757804.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 594
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS+FG+ +++D+ + S+G+G V F EEAQKA+ MNGK L GRVL+V
Sbjct: 192 LEELFSEFGKTLSVKVMVDENGH-SRGFGFVNFEKHEEAQKAVNSMNGKALGGRVLYV 248
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS +G +T A ++ + G SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 299 FSPYGVITSAKVMTEGGH--SKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 350
Score = 40.8 bits (94), Expect = 0.093, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 29/41 (70%)
Query: 23 KNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
+N S+G+G V F T+E A +A++ MNG LL+ R +FV + +
Sbjct: 119 ENGSRGFGFVHFETQEAANQAISTMNGMLLNDRKVFVGHFK 159
>gi|116787064|gb|ABK24360.1| unknown [Picea sitchensis]
Length = 365
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRV 56
+ DAF Q+G++ + +IMDK S+G+G VTF + AQKAL E + K +DGR+
Sbjct: 85 LCDAFEQYGEIEEGAVIMDKASGKSRGFGFVTFKHMDSAQKALKEPS-KTIDGRI 138
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS++G++ + ++ DK N S+G+ VTF T E ++AL E N K +DGR + V
Sbjct: 175 LLEVFSKYGEIEEGSVAYDKNTNKSRGFAFVTFKTVEATKRALKEPN-KTIDGRTVTV 231
>gi|90075670|dbj|BAE87515.1| unnamed protein product [Macaca fascicularis]
Length = 135
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG +++ ++ D+ S+G+G +TF+ E A A+ MNG+ LDGR + VD+
Sbjct: 22 LEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDH 81
Query: 62 VRPSRR 67
S R
Sbjct: 82 AGKSAR 87
>gi|332142478|ref|YP_004428216.1| hypothetical protein MADE_1015430 [Alteromonas macleodii str.
'Deep ecotype']
gi|410862690|ref|YP_006977924.1| hypothetical protein amad1_15375 [Alteromonas macleodii AltDE1]
gi|327552500|gb|AEA99218.1| hypothetical protein MADE_1015430 [Alteromonas macleodii str.
'Deep ecotype']
gi|410819952|gb|AFV86569.1| hypothetical protein amad1_15375 [Alteromonas macleodii AltDE1]
Length = 117
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG + ++MD+ N SKG+G V ST+EE KA+ ++N K++DG+ + V
Sbjct: 17 LEDLFFEFGTIASCDLVMDEATNLSKGFGFVEMSTQEETDKAIEKLNAKVIDGKKIRV 74
>gi|300113043|ref|YP_003759618.1| RNP-1 like RNA-binding protein [Nitrosococcus watsonii C-113]
gi|299538980|gb|ADJ27297.1| RNP-1 like RNA-binding protein [Nitrosococcus watsonii C-113]
Length = 118
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AF +G+V+ A +I+DK N SKG+G V +++E+A+ A+ EM+ + GR + V+ RP
Sbjct: 37 AFENYGEVSSAKVIVDKFSNRSKGFGFVEMASKEDAETAIKEMHDSDIKGRQIVVNEARP 96
Query: 65 SRRYNT 70
N
Sbjct: 97 RNESNN 102
>gi|156554126|ref|XP_001604025.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Nasonia
vitripennis]
Length = 627
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F+ FG +T ++M+ G+ SKG+G V FS EEA KA+TEMNG+++ + L+V
Sbjct: 316 FAPFGTITSVKVMMEDGR--SKGFGFVCFSLAEEATKAVTEMNGRIVGSKPLYV 367
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
D FS FG + + D+ +SKGYG V F TEE A K++ +NG LL+G+ ++V
Sbjct: 117 DTFSAFGNILSCRVAQDES-GSSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYV 171
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGK-LLDGRVLFV 59
+ + F ++G +T + M K S+G+G V F A +A+ ++NGK + +G++++V
Sbjct: 208 LKEMFEKYGTITSHKV-MSKDDGKSRGFGFVAFEDPNAADRAVADLNGKEIAEGKIMYV 265
>gi|223590120|sp|A5DM21.2|PABP_PICGU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|190347872|gb|EDK40224.2| hypothetical protein PGUG_04322 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F FG +T A +++D SKG+G V FS+ EEA KA+TEMN +++ G+ L+V
Sbjct: 358 LEEEFKPFGTITSARVMVDDA-GKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYV 414
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
F FG VT + D+ + S+G+G V F E A A+ EMN K +DG+ L+V +
Sbjct: 259 FKPFGPVTSVHLETDQ-EGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKK 317
Query: 66 R 66
R
Sbjct: 318 R 318
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRV--LF 58
++ + FS GQV+ + D S GY V F + +A+ E+N L+DGR +
Sbjct: 73 LLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEELNYSLVDGRPCRIM 132
Query: 59 VDNVRPSRRYNTD 71
PS R N D
Sbjct: 133 WSQRDPSLRRNGD 145
>gi|348553582|ref|XP_003462605.1| PREDICTED: putative RNA-binding protein 3-like [Cavia porcellus]
Length = 159
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG +++ ++ D+ S+G+G +TF+ E A A+ MNG+ LDGR + VD+
Sbjct: 22 LEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDH 81
Query: 62 VRPSRR 67
S R
Sbjct: 82 AGKSAR 87
>gi|242046266|ref|XP_002461004.1| hypothetical protein SORBIDRAFT_02g039025 [Sorghum bicolor]
gi|241924381|gb|EER97525.1| hypothetical protein SORBIDRAFT_02g039025 [Sorghum bicolor]
Length = 83
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 40/57 (70%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
D FS FG V +A ++ D+ KG+G V +S++ EA+KA+ M+G++L GR++FV+
Sbjct: 24 DVFSSFGTVEEARLMRDQQTGRIKGFGFVKYSSQAEAEKAVKAMDGRILRGRLIFVE 80
>gi|75319742|sp|Q43472.1|GRP_HORVU RecName: Full=Glycine-rich RNA-binding protein blt801; AltName:
Full=Low temperature-responsive RNA-binding protein
gi|1229138|gb|AAB07749.1| low temperature-responsive RNA-binding protein [Hordeum vulgare
subsp. vulgare]
Length = 161
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 43/65 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS++G V + II D+ S+G+G VTF+++E ++A+ MNG+ LDGR + V+
Sbjct: 22 LQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNE 81
Query: 62 VRPSR 66
+ R
Sbjct: 82 AQSRR 86
>gi|344279674|ref|XP_003411612.1| PREDICTED: polyadenylate-binding protein 1 [Loxodonta africana]
Length = 612
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FSQFG++ ++ D + S+G+G V F EEAQKA+ +MNGK + GR L+V
Sbjct: 207 LQDLFSQFGKLLSVKVMKDNNGH-SRGFGFVNFEKHEEAQKAVMDMNGKEVSGRQLYV 263
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS +G +T A ++ + G SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPYGVITSAKVMTEGGH--SKGFGFVCFSSPEEATKAVTEMNGRIIGTKPLYV 365
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 3/66 (4%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + ++ D+ + S+G+G V F T E AQ+A++ MNG LL+ R +FV +
Sbjct: 115 LYDTFSTFGNILSCKVVCDE--HGSRGFGFVHFETHEAAQQAISTMNGMLLNDRKVFVGH 172
Query: 62 VRPSRR 67
+ SRR
Sbjct: 173 FK-SRR 177
>gi|402086828|gb|EJT81726.1| nucleolar protein 4 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 749
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
FSQ V AT+++D TS+GYG VTF+ ++A +A ++N +LLDGR L +D P
Sbjct: 69 FSQHFPVKHATVVVDPKTKTSRGYGFVTFTDPDDAIQAKEKLNNELLDGRRLRLDIAEPR 128
Query: 66 RRYNTD--VPLARLKI 79
R T VP+ K+
Sbjct: 129 HRAATKAGVPVETSKV 144
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
F FG+V A + +KGK + G+G +T + A+ A+ ++NGK +DGR + VD
Sbjct: 183 FKGFGKVKFADLPNNKGKLS--GFGFITLRGRKNAETAIEKLNGKTVDGRPIAVD 235
>gi|146415246|ref|XP_001483593.1| hypothetical protein PGUG_04322 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F FG +T A +++D SKG+G V FS+ EEA KA+TEMN +++ G+ L+V
Sbjct: 358 LEEEFKPFGTITSARVMVDDA-GKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYV 414
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
+ F FG VT + D+ + S+G+G V F E A A+ EMN K +DG+ L+V +
Sbjct: 257 EIFKPFGPVTSVHLETDQ-EGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQ 315
Query: 64 PSR 66
R
Sbjct: 316 KKR 318
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRV--LF 58
++ + FS GQV+ + D S GY V F + +A+ E+N L+DGR +
Sbjct: 73 LLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEELNYSLVDGRPCRIM 132
Query: 59 VDNVRPSRRYNTD 71
PS R N D
Sbjct: 133 WSQRDPSLRRNGD 145
>gi|351706516|gb|EHB09435.1| Putative RNA-binding protein 3 [Heterocephalus glaber]
Length = 157
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG +++ ++ D+ S+G+G +TF+ E A A+ MNG+ LDGR + VD+
Sbjct: 22 LEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDH 81
Query: 62 V 62
Sbjct: 82 A 82
>gi|226293059|gb|EEH48479.1| nucleolar protein [Paracoccidioides brasiliensis Pb18]
Length = 691
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FSQ + AT+++D SKGYG VTF+ E+ +AL E NG + DG+ L ++
Sbjct: 64 LTDYFSQSYPLKHATVVLDPQTKQSKGYGFVTFADSEDVARALEEFNGSVFDGKKLKIEV 123
Query: 62 VRPSRR 67
P R
Sbjct: 124 AEPRHR 129
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
F FG+V K +I KG N G+G V + A+KAL +NGK +DGR L VD
Sbjct: 179 FRSFGKV-KYAVIPKKG-NKHSGFGFVVLRGRKNAEKALEAVNGKEVDGRTLAVD 231
>gi|91786529|ref|YP_547481.1| RNA recognition motif-containing protein [Polaromonas sp. JS666]
gi|91695754|gb|ABE42583.1| RNA-binding region RNP-1 (RNA recognition motif) [Polaromonas sp.
JS666]
Length = 134
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +F FG +T A ++M++ SKG+G V ++ EAQ A+ MNG+ L GR + V+
Sbjct: 19 LQQSFGAFGSITSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIAGMNGQSLGGRSITVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|2393873|gb|AAB70164.1| poly(A)-binding protein testis-specific isoform [Mus musculus]
Length = 603
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F +FGQ+ ++ D+G SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 186 FGRFGQILSVKVMTDEG-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 238
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
D FS FG + ++ D+ N SKG+G V F TEE A++A+ +MNG LL+ R +FV
Sbjct: 92 DTFSAFGNILSCKVVSDE--NGSKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFV 145
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T ++ + G+ SKG+G V FS+ EEA KA++EMNG+++ + L+V
Sbjct: 289 FSPFGTITSTKVMTEGGR--SKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYV 340
>gi|402697295|gb|AFQ90835.1| polyA-binding protein cytoplasmic 1, partial [Sternotherus minor]
Length = 175
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 12 LYDXFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 67
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + F FG ++ D+ SKG+G V+F E+AQKA+ EMNGK +G+ ++V
Sbjct: 104 LKELFGXFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVXEMNGKEXNGKQIYV-- 160
Query: 62 VRPSRRYNTDVPLAR 76
R ++ L R
Sbjct: 161 XRAQKKVERQTELKR 175
>gi|398803602|ref|ZP_10562623.1| RRM domain-containing RNA-binding protein [Polaromonas sp. CF318]
gi|398096229|gb|EJL86556.1| RRM domain-containing RNA-binding protein [Polaromonas sp. CF318]
Length = 133
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +F FG +T A ++M++ SKG+G V ++ EAQ A+ MNG+ L GR + V+
Sbjct: 19 LQQSFGAFGSITSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIAGMNGQSLGGRSITVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|38541222|gb|AAH62832.1| Pabpc1a protein, partial [Danio rerio]
Length = 327
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV 170
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F ++G ++ D SKG+G V+F E+AQ+A+ EMNGK ++G+ ++V
Sbjct: 207 LKEIFCKYGPALSIRVMTDDS-GKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYV 263
>gi|402697291|gb|AFQ90833.1| polyA-binding protein cytoplasmic 1, partial [Malaclemys
terrapin]
Length = 175
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 12 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 67
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 18 IMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYNTDVPLAR 76
+M SKG+G V+F E+AQKA+ EMNGK L+G+ ++V R ++ L R
Sbjct: 119 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG--RAQKKVERQTELKR 175
>gi|297598418|ref|NP_001045556.2| Os01g0974600 [Oryza sativa Japonica Group]
gi|215768629|dbj|BAH00858.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222619969|gb|EEE56101.1| hypothetical protein OsJ_04953 [Oryza sativa Japonica Group]
gi|255674125|dbj|BAF07470.2| Os01g0974600 [Oryza sativa Japonica Group]
Length = 116
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
+ DAFSQ G + + +I SKGYG V F++E+EA AL +M G+++DGR
Sbjct: 53 LKDAFSQHGHIIQVKVICHPVTGKSKGYGFVKFASEDEAAAALHKMGGEVIDGR 106
>gi|223938363|ref|ZP_03630257.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
gi|223892932|gb|EEF59399.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
Length = 127
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D F+Q G VT +IMDK +G+G VT T+E AQ A+ +NG GR L V+
Sbjct: 19 LQDMFAQHGPVTSVDLIMDKFSGRPRGFGFVTMETQEGAQAAVQALNGTDFGGRPLTVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|402697297|gb|AFQ90836.1| polyA-binding protein cytoplasmic 1, partial [Testudo hermanni]
Length = 176
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 12 LYDXFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 67
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + F FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 104 LKELFGXFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVXEMNGKELNGKQIYVG- 161
Query: 62 VRPSRRYNTDVPLAR 76
R ++ L R
Sbjct: 162 -RAQKKVERQTELKR 175
>gi|393216848|gb|EJD02338.1| polyadenylate binding protein [Fomitiporia mediterranea MF3/22]
Length = 701
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 4/62 (6%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
F FG +T I+ D+ K TSKG+G V +S+ EEA KA+ EMN K+L + L+V P+
Sbjct: 360 FEPFGTITSCKIMRDE-KGTSKGFGFVCYSSPEEATKAVAEMNNKMLGSKPLYVS---PA 415
Query: 66 RR 67
+R
Sbjct: 416 QR 417
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
D F++FG+VT A + D+ + SKG+G V F E AQ A+ ++ L+G+ LFV
Sbjct: 255 DMFAKFGEVTSAVVQKDE-EGKSKGFGFVNFKDHESAQAAVDALHDTELNGKKLFV 309
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F+ FG V + D+ S+G+G V + T E A A+ +NG LL+ + +FV
Sbjct: 160 LHDTFAAFGNVLSCKVATDE-NGRSRGFGFVHYDTAEAADTAIKAVNGMLLNDKKVFV 216
>gi|303316410|ref|XP_003068207.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240107888|gb|EER26062.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|320037953|gb|EFW19889.1| ribosome biogenesis protein Nop4 [Coccidioides posadasii str.
Silveira]
Length = 751
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + FSQ + AT + D KGYG VTF+ E+AQ+AL E+NG + DGR L ++
Sbjct: 62 LTEYFSQSYPIKHATAVADPQTKQCKGYGFVTFADVEDAQRALGELNGSVFDGRKLKIEV 121
Query: 62 VRPSRR 67
P R
Sbjct: 122 AEPRHR 127
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+A F +G+V K +I KG + G+G V ++ A+KAL +NGK +DGR L VD
Sbjct: 175 QLAVLFRSYGKV-KHAVIPKKGSRHA-GFGFVVMRGKKNAEKALEGVNGKEVDGRTLAVD 232
>gi|37497112|ref|NP_058089.2| putative RNA-binding protein 3 isoform 1 [Mus musculus]
gi|261862337|ref|NP_001159881.1| putative RNA-binding protein 3 isoform 1 [Mus musculus]
gi|26340316|dbj|BAC33821.1| unnamed protein product [Mus musculus]
gi|26352956|dbj|BAC40108.1| unnamed protein product [Mus musculus]
gi|37589528|gb|AAH59098.1| Rbm3 protein [Mus musculus]
Length = 154
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG +++ ++ D+ S+G+G +TF+ E A A+ MNG+ LDGR + VD+
Sbjct: 22 LEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDH 81
Query: 62 V 62
Sbjct: 82 A 82
>gi|62955567|ref|NP_001017797.1| cold inducible RNA binding protein [Danio rerio]
gi|62202782|gb|AAH93299.1| Zgc:112425 [Danio rerio]
gi|63100518|gb|AAH95030.1| Zgc:112425 [Danio rerio]
gi|182889498|gb|AAI65256.1| Zgc:112425 protein [Danio rerio]
Length = 185
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 39/59 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ DAFS++G +T + ++ N S+G+G VTF ++A+ AL MNGK +DGR + VD
Sbjct: 21 LEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEGMNGKSVDGRTIRVD 79
>gi|313203177|ref|YP_004041834.1| rnp-1 like RNA-binding protein [Paludibacter propionicigenes WB4]
gi|312442493|gb|ADQ78849.1| RNP-1 like RNA-binding protein [Paludibacter propionicigenes WB4]
Length = 81
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +A +++GQV +IMD+ SKG+ V S EE A+K + E+NG DGR + V
Sbjct: 17 LQEAIAEYGQVDSCKLIMDRETRRSKGFAFVEMSDEEAAKKVIAELNGAEFDGRAMVVKE 76
Query: 62 VRPSR 66
P +
Sbjct: 77 ALPKK 81
>gi|225683698|gb|EEH21982.1| nucleolar protein [Paracoccidioides brasiliensis Pb03]
Length = 730
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FSQ + AT+++D SKGYG VTF+ E+ +AL E NG + DG+ L ++
Sbjct: 64 LTDYFSQSYPLKHATVVLDPQTKQSKGYGFVTFADSEDVARALEEFNGSVFDGKKLKIEV 123
Query: 62 VRPSRR 67
P R
Sbjct: 124 AEPRHR 129
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
F FG+V K +I KG N G+G V + A+KAL +NGK +DGR L VD
Sbjct: 179 FRSFGKV-KHAVIPKKG-NKHSGFGFVVLRGRKNAEKALEAVNGKEVDGRTLAVD 231
>gi|400602999|gb|EJP70597.1| cutinase negative acting protein [Beauveria bassiana ARSEF 2860]
Length = 448
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD--N 61
+AF FG + A ++ DK S+G+G V F E A KA M G+ +DGR L +D N
Sbjct: 221 EAFKSFGNIVSARVVTDKNTGRSRGFGYVDFGDSESATKAYEAMQGQEIDGRALNLDYAN 280
Query: 62 VRPSRRYNTDVPLARLKIH 80
+P+ D R K H
Sbjct: 281 AKPTEGKPQDRAADRAKRH 299
>gi|218193471|gb|EEC75898.1| hypothetical protein OsI_12955 [Oryza sativa Indica Group]
Length = 139
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AFS +G++ + II D+ S+G+G VTFS+E+ + A+ MNGK LDGR + V+ +
Sbjct: 27 AFSTYGEILDSKIINDRETGRSRGFGFVTFSSEQSMRDAIEGMNGKELDGRNITVNEAQS 86
Query: 65 SR 66
R
Sbjct: 87 RR 88
>gi|544423|sp|Q99070.1|GRP2_SORBI RecName: Full=Glycine-rich RNA-binding protein 2
gi|21625|emb|CAA40862.1| glycine-rich RNA-binding protein [Sorghum bicolor]
Length = 168
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 38/60 (63%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AF+ FGQV + +I D+ S+G+G VTFS+E+ A+ MNGK LDGR + V+ +
Sbjct: 27 AFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQS 86
>gi|296088109|emb|CBI35498.3| unnamed protein product [Vitis vinifera]
Length = 153
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 43/65 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AF +FG + +A +++DK S+G+G V+F ++ + A+ EM+G LDGR + VD
Sbjct: 23 LKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVSFDDKQAMEDAIKEMHGMDLDGRSITVDK 82
Query: 62 VRPSR 66
+P++
Sbjct: 83 AQPNQ 87
>gi|302036839|ref|YP_003797161.1| RNA-binding protein [Candidatus Nitrospira defluvii]
gi|190343253|gb|ACE75641.1| RNA-binding protein [Candidatus Nitrospira defluvii]
gi|300604903|emb|CBK41236.1| RNA-binding protein [Candidatus Nitrospira defluvii]
Length = 107
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+++ FS G V A +I DK S+G+G V ST EEA+ A+T +NG +DGR L V+
Sbjct: 19 LSNLFSAHGTVESARVITDKFTGQSRGFGFVEMSTAEEAKAAITALNGSDMDGRQLTVNE 78
Query: 62 VRP 64
+P
Sbjct: 79 AKP 81
>gi|449281934|gb|EMC88877.1| Embryonic polyadenylate-binding protein [Columba livia]
Length = 646
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS +G +T A ++ + G SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 330 FSPYGTITSAKVMTEGGH--SKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 381
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + ++ D+ N S+GYG V F T E A +A+ MNG LL+ R +FV +
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSRGYGFVHFETHEAATRAIETMNGMLLNDRKVFVGH 172
Query: 62 VR 63
+
Sbjct: 173 FK 174
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 17/74 (22%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQK----------------ALT 45
+ + FS+FG+ ++MD SKG+G V F EEAQK A+
Sbjct: 207 LREIFSKFGKTLSVKVMMD-STGRSKGFGFVNFEKHEEAQKARGSSCCAQRPPLRWQAVA 265
Query: 46 EMNGKLLDGRVLFV 59
+MNGK ++GR+++V
Sbjct: 266 DMNGKEINGRIVYV 279
>gi|390600853|gb|EIN10247.1| RNA-binding domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 329
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 38/57 (66%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
D FS+FGQV K TI+ D+ S+G+G + +T E+A KA+ +NG L+GR + VD
Sbjct: 93 DEFSRFGQVEKVTIVYDQRSGRSRGFGFIKMATVEDATKAIENLNGVDLNGRRIRVD 149
>gi|318087158|gb|ADV40171.1| putative polyA binding protein cytoplasmic 1 isoform 1 [Latrodectus
hesperus]
Length = 217
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + + D+ N SKGYG V F TEE A A+ ++NG LL+GR +FV
Sbjct: 119 DTFSAFGNILSCKVATDEESN-SKGYGFVHFETEEAANNAIQKVNGMLLNGRKVFVGKFV 177
Query: 64 P 64
P
Sbjct: 178 P 178
>gi|294884882|gb|ADF47449.1| TIA1-like protein [Dugesia japonica]
Length = 383
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 36/54 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
+ + FS FG+VT+ II D KGYG V ++T+EEA++AL +MNGK L R
Sbjct: 129 LRERFSLFGRVTECKIIKDMHTQKPKGYGFVAYATKEEAEEALNKMNGKFLGTR 182
>gi|218189840|gb|EEC72267.1| hypothetical protein OsI_05421 [Oryza sativa Indica Group]
Length = 116
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
+ DAFSQ G + + +I SKGYG V F++E+EA AL +M G+++DGR
Sbjct: 53 LKDAFSQHGHIIQVKVICHPVTGKSKGYGFVKFASEDEAAAALHKMGGEVIDGR 106
>gi|428183055|gb|EKX51914.1| hypothetical protein GUITHDRAFT_84932 [Guillardia theta CCMP2712]
Length = 616
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FSQFG + + MD+ N S+G+G V F T EEA +A++++NG LL+ + LFV
Sbjct: 128 LHDTFSQFGNILSCKVSMDEHAN-SRGFGFVQFETAEEANEAISKVNGMLLEDKRLFVGP 186
Query: 62 VRP 64
P
Sbjct: 187 FIP 189
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 6 FSQFGQVTKATIIMDKGK-NTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F QFG +T A ++ DK + SKG+G V F+ EEA +A+T MNG+++ + ++V
Sbjct: 328 FEQFGTITSAKVMRDKDRPEVSKGFGFVCFAQPEEATRAVTAMNGQMVGTKPIYV 382
Score = 37.7 bits (86), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGK 50
+F ++G++T I M K TSK +G V F ++A+K EMNG+
Sbjct: 222 SFERYGEITSCKI-MRKEDGTSKCFGFVNFKEADDAKKCCEEMNGQ 266
>gi|55778182|gb|AAH86491.1| Rbm3 protein [Mus musculus]
Length = 128
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG +++ ++ D+ S+G+G +TF+ E A A+ MNG+ LDGR + VD+
Sbjct: 22 LEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDH 81
Query: 62 V 62
Sbjct: 82 A 82
>gi|351705901|gb|EHB08820.1| Polyadenylate-binding protein 5 [Heterocephalus glaber]
Length = 382
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + FS FG +++A ++M+ G+ KG+G V FS+ EEA KA+ EMNG+L+ + L V
Sbjct: 318 LKEEFSSFGSISRAKVMMEVGQ--GKGFGVVCFSSFEEATKAVDEMNGRLVGSKALHVTL 375
Query: 62 VRPSRRY 68
+ RR+
Sbjct: 376 GQVRRRW 382
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS++GQ+ ++ D SKG+G V + T E AQKA+ E++GK +DG+VL+V
Sbjct: 215 LKELFSEYGQIESVKVVRD-ASGKSKGFGFVKYETHEAAQKAVLELHGKSMDGKVLYV 271
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG + ++ D N SKGY V F + A +A+ MNG L+ R ++V
Sbjct: 126 FSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
>gi|348501352|ref|XP_003438234.1| PREDICTED: cold-inducible RNA-binding protein A-like [Oreochromis
niloticus]
Length = 183
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+A AF ++G + K +I DK S+G+G V + E+A+ AL MNGK LDGR + VD
Sbjct: 21 LAAAFGKYGTIEKVDVIRDKETGRSRGFGFVKYDNAEDAKDALDAMNGKTLDGRAIRVDE 80
Query: 62 V 62
Sbjct: 81 A 81
>gi|340546029|gb|AEK51813.1| cytoplasmic poly(A) binding protein 1 [Alligator
mississippiensis]
gi|402697275|gb|AFQ90825.1| polyA-binding protein cytoplasmic 1, partial [Anniella pulchra]
gi|402697277|gb|AFQ90826.1| polyA-binding protein cytoplasmic 1, partial [Chelydra
serpentina]
gi|402697281|gb|AFQ90828.1| polyA-binding protein cytoplasmic 1, partial [Cyrtodactylus sp.
JJF-2012]
gi|402697287|gb|AFQ90831.1| polyA-binding protein cytoplasmic 1, partial [Draco beccarii]
gi|402697289|gb|AFQ90832.1| polyA-binding protein cytoplasmic 1, partial [Draco sumatranus]
Length = 177
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 12 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 67
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 104 LKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG- 161
Query: 62 VRPSRRYNTDVPLAR 76
R ++ L R
Sbjct: 162 -RAQKKVERQTELKR 175
>gi|449438165|ref|XP_004136860.1| PREDICTED: uncharacterized protein LOC101215898 [Cucumis sativus]
gi|449478936|ref|XP_004155458.1| PREDICTED: uncharacterized protein LOC101227324 [Cucumis sativus]
Length = 211
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AF +FG + +A +++DK S+G+G VTF ++ +A+ MNG LDGR + VD
Sbjct: 23 LKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKAMDEAIKAMNGMDLDGRSITVDK 82
Query: 62 VRPS----RRYNTDVP 73
+P+ R ++ D P
Sbjct: 83 AQPNQGSGRDHDGDRP 98
>gi|145233965|ref|XP_001400355.1| glycine-rich RNA-binding protein 2 [Aspergillus niger CBS 513.88]
gi|134057294|emb|CAK37908.1| unnamed protein product [Aspergillus niger]
gi|350635078|gb|EHA23440.1| hypothetical protein ASPNIDRAFT_197860 [Aspergillus niger ATCC
1015]
Length = 116
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + FSQ+G + +A ++ D + S+G+G V F+++ EA A+ MN + DGRV+ VD
Sbjct: 18 LREGFSQYGTIEEAIVVKDHDTHRSRGFGFVRFASDVEADAAMNAMNNQEFDGRVIRVDK 77
Query: 62 VRPSR 66
SR
Sbjct: 78 ASESR 82
>gi|410255528|gb|JAA15731.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
Length = 157
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG +++ ++ D+ S+G+G +TF+ E A A+ MNG+ LDGR + VD+
Sbjct: 22 LEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDH 81
Query: 62 VRPSRR 67
S R
Sbjct: 82 AGKSAR 87
>gi|326931817|ref|XP_003212020.1| PREDICTED: embryonic polyadenylate-binding protein-like [Meleagris
gallopavo]
Length = 633
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS+FG+ ++MD SKG+G V F EEAQKA+ +MNGK ++GR+++V
Sbjct: 207 LREIFSRFGKTLSVKVMMDN-TGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYV 263
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS +G +T A ++ + G SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPYGTITSAKVMTEGGH--SKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + ++ D+ N S+G+G V F T+E A +A+ MNG LL+ R +FV +
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSRGHGFVHFETQEAATRAIETMNGMLLNDRKVFVGH 172
Query: 62 VR 63
+
Sbjct: 173 FK 174
>gi|326515712|dbj|BAK07102.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 104
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 43/65 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS++G V + II D+ S+G+G VTF+++E ++A+ MNG+ LDGR + V+
Sbjct: 22 LQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNE 81
Query: 62 VRPSR 66
+ R
Sbjct: 82 AQSRR 86
>gi|118100597|ref|XP_417367.2| PREDICTED: embryonic polyadenylate-binding protein-like [Gallus
gallus]
Length = 632
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS+FG+ ++MD SKG+G V F EEAQKA+ +MNGK ++GR+++V
Sbjct: 207 LREIFSRFGKTLSVKVMMDH-TGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYV 263
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS +G +T A ++ + G SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPYGTITSAKVMTEGGH--SKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + ++ D+ N S+G+G V F T+E A +A+ MNG LL+ R +FV +
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGH 172
Query: 62 VR 63
+
Sbjct: 173 FK 174
>gi|10799202|gb|AAG23220.1| glycine-rich RNA-binding protein [Sorghum bicolor]
Length = 170
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 38/60 (63%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AF+ FGQV + +I D+ S+G+G VTFS+E+ A+ MNGK LDGR + V+ +
Sbjct: 27 AFANFGQVLDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQS 86
>gi|355757333|gb|EHH60858.1| RNA-binding motif protein 3 [Macaca fascicularis]
Length = 157
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG +++ ++ D+ S+G+G +TF+ E A A+ MNG+ LDGR + VD+
Sbjct: 22 LEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDH 81
Query: 62 VRPSRR 67
S R
Sbjct: 82 AGKSAR 87
>gi|126342190|ref|XP_001379497.1| PREDICTED: polyadenylate-binding protein 1 [Monodelphis domestica]
Length = 669
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ ++A KA EMNGKL+ + L+V
Sbjct: 348 FSPFGTITSAKVMMENGR--SKGFGFVCFSSSKDAAKASREMNGKLVASKPLYV 399
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG++ +I D+ N SKGYG V F T+E A KA+ +MNG LL+ +FV
Sbjct: 149 LYDTFSTFGRILSCKVISDE--NGSKGYGFVHFETQESAGKAIEKMNGMLLNNLKVFVGR 206
Query: 62 VRPSRRYNTDV 72
+ R +++
Sbjct: 207 FKSRRERESEL 217
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + F+++G ++ D SKG+G V+F + E+AQ A+ +MNGK L+G+ ++V
Sbjct: 241 LTEIFAKYGPTLSVKVMTDDC-GRSKGFGFVSFQSHEDAQAAVDDMNGKQLNGKQIYVGR 299
Query: 62 VRPSRRYNTDV 72
+ R T++
Sbjct: 300 AQKKRERQTEL 310
>gi|119188303|ref|XP_001244758.1| hypothetical protein CIMG_04199 [Coccidioides immitis RS]
gi|392871470|gb|EAS33387.2| ribosome biogenesis protein [Coccidioides immitis RS]
Length = 751
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + FSQ + AT + D KGYG VTF+ E+AQ+AL E+NG + DGR L ++
Sbjct: 62 LTEYFSQSYPIKHATAVADPQTKQCKGYGFVTFADVEDAQRALGELNGSVFDGRKLKIEV 121
Query: 62 VRPSRR 67
P R
Sbjct: 122 AEPRHR 127
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+A F +G+V K +I KG + G+G V ++ A+KAL +NGK +DGR L VD
Sbjct: 175 QLAVLFRSYGKV-KHAVIPKKGSRHA-GFGFVVMRGKKNAEKALEGVNGKEVDGRTLAVD 232
>gi|73992493|ref|XP_534430.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Canis lupus
familiaris]
Length = 611
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS +G +T A ++ + G SKG+G V FS+ EEA KA+TEMNG++L + L+V
Sbjct: 314 FSPYGVITSAKVMTEGGH--SKGFGFVCFSSPEEATKAVTEMNGRILGTKPLYV 365
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + ++ D + S+G+G V F T E AQ+A+T MNG LL+ R +FV +
Sbjct: 115 LYDTFSTFGNILSCKVVCDD--HGSRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGH 172
Query: 62 VRPSRR 67
+ SRR
Sbjct: 173 FK-SRR 177
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS+FG++ ++ D + S+G+G V F EEAQKA+ +MNGK + GR+L+V
Sbjct: 207 LQDLFSRFGKMLSVKVMRDDSGH-SRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYV 263
>gi|5803137|ref|NP_006734.1| putative RNA-binding protein 3 [Homo sapiens]
gi|383872909|ref|NP_001244635.1| RNA binding motif (RNP1, RRM) protein 3 [Macaca mulatta]
gi|332860686|ref|XP_521047.2| PREDICTED: putative RNA-binding protein 3 isoform 2 [Pan
troglodytes]
gi|332860688|ref|XP_003317502.1| PREDICTED: putative RNA-binding protein 3 isoform 1 [Pan
troglodytes]
gi|397471359|ref|XP_003807263.1| PREDICTED: putative RNA-binding protein 3 isoform 1 [Pan
paniscus]
gi|397471361|ref|XP_003807264.1| PREDICTED: putative RNA-binding protein 3 isoform 2 [Pan
paniscus]
gi|402910082|ref|XP_003917720.1| PREDICTED: putative RNA-binding protein 3 [Papio anubis]
gi|426395802|ref|XP_004064149.1| PREDICTED: putative RNA-binding protein 3 isoform 1 [Gorilla
gorilla gorilla]
gi|426395804|ref|XP_004064150.1| PREDICTED: putative RNA-binding protein 3 isoform 2 [Gorilla
gorilla gorilla]
gi|1710620|sp|P98179.1|RBM3_HUMAN RecName: Full=Putative RNA-binding protein 3; AltName:
Full=RNA-binding motif protein 3; AltName: Full=RNPL
gi|881954|gb|AAB17212.1| RNPL [Homo sapiens]
gi|13905080|gb|AAH06825.1| RNA binding motif (RNP1, RRM) protein 3 [Homo sapiens]
gi|119571152|gb|EAW50767.1| RNA binding motif (RNP1, RRM) protein 3, isoform CRA_c [Homo
sapiens]
gi|119571153|gb|EAW50768.1| RNA binding motif (RNP1, RRM) protein 3, isoform CRA_c [Homo
sapiens]
gi|380815298|gb|AFE79523.1| putative RNA-binding protein 3 [Macaca mulatta]
gi|380815300|gb|AFE79524.1| putative RNA-binding protein 3 [Macaca mulatta]
gi|380815302|gb|AFE79525.1| putative RNA-binding protein 3 [Macaca mulatta]
gi|383420491|gb|AFH33459.1| putative RNA-binding protein 3 [Macaca mulatta]
gi|383420493|gb|AFH33460.1| putative RNA-binding protein 3 [Macaca mulatta]
gi|384948600|gb|AFI37905.1| putative RNA-binding protein 3 [Macaca mulatta]
gi|384948602|gb|AFI37906.1| putative RNA-binding protein 3 [Macaca mulatta]
gi|410228038|gb|JAA11238.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
Length = 157
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG +++ ++ D+ S+G+G +TF+ E A A+ MNG+ LDGR + VD+
Sbjct: 22 LEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDH 81
Query: 62 VRPSRR 67
S R
Sbjct: 82 AGKSAR 87
>gi|359386152|gb|AEV43365.1| poly A-binding protein 2 [Citrus sinensis]
Length = 652
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS+FG +T ++ D S+G G V FST EEA KALTEMNGK++ + L+V
Sbjct: 338 LKELFSEFGTITSCKVMRDP-NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYV 394
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + + D S+GYG V F EE A+ A+ ++NG LL+ + +FV
Sbjct: 144 LHDTFSTFGNILSCKVATDS-LGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFV 200
Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVL 57
+ D F+Q GQV + D S GYG V ++ EA +AL E+N L+G+ +
Sbjct: 56 LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELNFTPLNGKPI 111
>gi|340546031|gb|AEK51814.1| cytoplasmic poly(A) binding protein 1 [Heteronotia binoei]
Length = 177
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 12 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 67
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 104 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 160
>gi|297841929|ref|XP_002888846.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
gi|297334687|gb|EFH65105.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
Length = 685
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS++G VT ++M+ + S+G+G V +S+ EEA +AL+EMNGK++ + L+V
Sbjct: 357 LKEMFSEYGNVTSCKVMMNS-QGLSRGFGFVAYSSPEEASRALSEMNGKMIGRKPLYV 413
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS FG + + MD SKGYG V F EE AQ A+ ++NG LL+ + +FV
Sbjct: 161 LYETFSAFGTILSCKVAMD-AVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFV 217
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F ++G ++ A ++ D+ N S+ +G V F + E A A+ +MNG L VL+V
Sbjct: 258 FGKYGDISSAVVMKDQSGN-SRSFGFVNFESPEAAAVAVEKMNGISLGEDVLYV 310
>gi|13365525|dbj|BAB39136.1| poly(A)-binding protein [Carassius auratus]
Length = 154
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T E A++A+ +MNG LL+ R +FV
Sbjct: 31 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV 86
>gi|255949670|ref|XP_002565602.1| Pc22g16890 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211592619|emb|CAP98977.1| Pc22g16890 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 724
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+A+ FSQ + A ++ DK SKG+G VTF+ E+A+ AL E+NG DG+V+ VD
Sbjct: 52 LAEYFSQSYIIKHAVVVCDKETKASKGFGFVTFADVEDAESALKELNGSKFDGKVIRVDY 111
Query: 62 VRPSRRYNTDVPLAR 76
SR+ D + R
Sbjct: 112 AE-SRKREIDEKVGR 125
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
F FG+V AT+ GK + G+G +T + A++AL +NGK +DGR L VD
Sbjct: 170 FRSFGKVKFATLPKRNGKLS--GFGFITMRGRKNAERALQMINGKEIDGRQLAVD 222
>gi|261862339|ref|NP_001159882.1| putative RNA-binding protein 3 isoform 2 [Mus musculus]
gi|261862342|ref|NP_001159883.1| putative RNA-binding protein 3 isoform 2 [Mus musculus]
gi|6093936|sp|O89086.1|RBM3_MOUSE RecName: Full=Putative RNA-binding protein 3; AltName:
Full=RNA-binding motif protein 3
gi|3395381|dbj|BAA32060.1| rbm3 [Mus musculus]
gi|12834559|dbj|BAB22957.1| unnamed protein product [Mus musculus]
gi|12840849|dbj|BAB24981.1| unnamed protein product [Mus musculus]
gi|13879226|gb|AAH06580.1| Rbm3 protein [Mus musculus]
gi|15983757|gb|AAL10707.1| RNA-binding motif protein 3 [Mus musculus]
gi|74180334|dbj|BAE32335.1| unnamed protein product [Mus musculus]
gi|74198712|dbj|BAE39828.1| unnamed protein product [Mus musculus]
gi|74228699|dbj|BAE21846.1| unnamed protein product [Mus musculus]
gi|76780243|gb|AAI06177.1| Rbm3 protein [Mus musculus]
gi|148702004|gb|EDL33951.1| mCG116386, isoform CRA_a [Mus musculus]
gi|148702009|gb|EDL33956.1| mCG116386, isoform CRA_a [Mus musculus]
Length = 153
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG +++ ++ D+ S+G+G +TF+ E A A+ MNG+ LDGR + VD+
Sbjct: 22 LEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDH 81
Query: 62 V 62
Sbjct: 82 A 82
>gi|448115215|ref|XP_004202770.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359383638|emb|CCE79554.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 626
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F FG +T A +++D+ SKG+G V FS+ EEA KA+TEMN ++ G+ L+V
Sbjct: 350 LEEEFKPFGTITSARVMVDE-HGKSKGFGFVCFSSPEEATKAITEMNQRMFHGKPLYV 406
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
F +G++T + D + SKG+G V F + E A KA+ E+N K ++G+ L+V +
Sbjct: 251 FEPYGKITSLHLEKD-AEGKSKGFGFVNFESHEAAVKAVEELNDKDINGQNLYVGRAQKK 309
Query: 66 R 66
R
Sbjct: 310 R 310
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
FS GQV+ + D S GY V F E+ +KA+ ++N L+DGR
Sbjct: 70 FSPVGQVSSIRVCRDAVTKKSLGYAYVNFHKLEDGEKAIDDLNYSLIDGR 119
>gi|332255488|ref|XP_003276864.1| PREDICTED: putative RNA-binding protein 3 isoform 1 [Nomascus
leucogenys]
Length = 157
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG +++ ++ D+ S+G+G +TF+ E A A+ MNG+ LDGR + VD+
Sbjct: 22 LEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDH 81
Query: 62 VRPSRR 67
S R
Sbjct: 82 AGKSAR 87
>gi|242015973|ref|XP_002428613.1| RNA-binding region-containing protein, putative [Pediculus humanus
corporis]
gi|212513276|gb|EEB15875.1| RNA-binding region-containing protein, putative [Pediculus humanus
corporis]
Length = 593
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
M+ F FG++ +IMD SKGYG +TF + ++A+KAL ++NG L GR + V
Sbjct: 280 MLRGIFEPFGKIDSIQLIMDPETGRSKGYGFITFHSADDAKKALEQLNGFELAGRPMKVG 339
Query: 61 NVR 63
NV+
Sbjct: 340 NVQ 342
>gi|194672643|ref|XP_882298.3| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 19
[Bos taurus]
gi|297482024|ref|XP_002692514.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Bos taurus]
gi|296480945|tpg|DAA23060.1| TPA: polyadenylate-binding protein 1-like [Bos taurus]
Length = 613
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FSQFG++ ++ D + S+G+G V F EEAQKA+ MNG+ + GR+L+V
Sbjct: 207 LQDLFSQFGKMLSVKVMRDDSGH-SRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYV 263
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS +G +T A ++ + G SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPYGVITSAKVMTEGGH--SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 365
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + ++ D+ + S+G+G V F T E AQ A++ MNG LL+ R +FV +
Sbjct: 115 LYDTFSTFGNILSCKVVCDE--HGSRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGH 172
Query: 62 VRPSRR 67
+ SRR
Sbjct: 173 FK-SRR 177
>gi|17537143|ref|NP_496718.1| Protein TIAR-2 [Caenorhabditis elegans]
gi|6425313|emb|CAB60356.1| Protein TIAR-2 [Caenorhabditis elegans]
Length = 434
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVL 57
+ +AF +FG+V++A II D N KGYG V++ E+A++A+ EMNG L R +
Sbjct: 148 LREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTI 203
>gi|343459003|gb|AEM37660.1| cold inducible RNA binding protein [Epinephelus bruneus]
Length = 176
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+A AF ++G + K +I DK S+G+G V + ++A+ AL MNGK LDGR + VD
Sbjct: 21 LAAAFGKYGTIEKVDVIRDKETGRSRGFGFVKYDNSDDAKDALEGMNGKTLDGRAIRVDE 80
Query: 62 VRPSRRYN 69
R N
Sbjct: 81 AGKGGRSN 88
>gi|297814870|ref|XP_002875318.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321156|gb|EFH51577.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 247
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 41/65 (63%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ DAF ++G + +A +++DK S+G+G +TF ++ +A+ MNG LDGR + VD
Sbjct: 23 LRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDK 82
Query: 62 VRPSR 66
+P +
Sbjct: 83 AQPHQ 87
>gi|448112633|ref|XP_004202146.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359465135|emb|CCE88840.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 625
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F FG +T A +++D+ SKG+G V FS+ EEA KA+TEMN ++ G+ L+V
Sbjct: 350 LEEEFKPFGTITSARVMVDE-HGKSKGFGFVCFSSPEEATKAITEMNQRMFHGKPLYV 406
Score = 41.2 bits (95), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
++ + FS GQV+ + D S GY V F E+ +KA+ E+N L+DGR
Sbjct: 65 LLFEIFSPVGQVSSIRVCRDAVTKKSLGYAYVNFHKLEDGEKAIEELNYSLIDGR 119
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
F +G++T + D + SKG+G V F + E A KA+ E+N K ++G+ L+V +
Sbjct: 251 FEPYGKITSLHLEKD-AEGKSKGFGFVNFESHEAAVKAVEELNDKDINGQKLYVGRAQKK 309
Query: 66 R 66
R
Sbjct: 310 R 310
>gi|426242065|ref|XP_004014898.1| PREDICTED: polyadenylate-binding protein 1-like [Ovis aries]
Length = 611
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FSQFG++ ++ D + S+G+G V F EEAQKA+ MNG+ + GR+L+V
Sbjct: 207 LQDLFSQFGKMLSVKVMRDDSGH-SRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYV 263
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS +G +T A ++ + G SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPYGVITSAKVMTEGGH--SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 365
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + ++ D+ + S+G+G V F T E AQ A++ MNG LL+ R +FV +
Sbjct: 115 LYDTFSTFGNILSCKVVCDE--HGSRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGH 172
Query: 62 VRPSRR 67
+ SRR
Sbjct: 173 FK-SRR 177
>gi|406959178|gb|EKD86596.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 81
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 40/63 (63%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+A+ F+Q G V A ++ D+ S+G+G V ST+EEAQ A+ +NG ++GR + V+
Sbjct: 15 LAELFAQAGNVVSAQVVKDRETGRSRGFGFVEMSTDEEAQNAVKNLNGTDVEGRKIVVNI 74
Query: 62 VRP 64
RP
Sbjct: 75 ARP 77
>gi|255633638|gb|ACU17178.1| unknown [Glycine max]
Length = 196
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD- 60
+ +AFS++G+V A IIMD+ S+G+G +T+++ EEA A+ ++G+ L GR + V+
Sbjct: 58 LREAFSKYGEVVDARIIMDRETGRSRGFGFITYTSVEEASSAIQALDGQDLHGRPIRVNY 117
Query: 61 -NVRP 64
N RP
Sbjct: 118 ANERP 122
>gi|224286824|gb|ACN41115.1| unknown [Picea sitchensis]
Length = 149
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 37/55 (67%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
FS+FGQ+ +A ++ D+ S+G+G V ++T E+A K M+GK LDG V+F D
Sbjct: 64 FSEFGQLVEARVVTDRISGRSRGFGFVRYATLEDAAKGKEGMDGKFLDGWVIFAD 118
>gi|239813338|ref|YP_002942248.1| RNP-1 like RNA-binding protein [Variovorax paradoxus S110]
gi|239799915|gb|ACS16982.1| RNP-1 like RNA-binding protein [Variovorax paradoxus S110]
Length = 137
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ AF +FG + A ++M++ SKG+G V T+ EA A+ MNG L GR L V+
Sbjct: 19 LEQAFGEFGSIVSAKVMMERDTGRSKGFGFVEMGTDAEALAAVEAMNGHSLQGRALTVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|410956870|ref|XP_003985059.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Felis catus]
Length = 486
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 39/54 (72%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +++ I+ ++G+ SKG+G + FS+ EEA KA+ EMNG++L + L++
Sbjct: 412 FSSFGSISRVKIMREEGR--SKGFGLICFSSPEEATKAMAEMNGRILGSKPLYI 463
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS++G+ ++ D SKG+G V+F + E A+KA+ EMNGK ++G++LFV
Sbjct: 305 LKEVFSKYGKTLSVKVMTDSS-GKSKGFGFVSFDSHEAAKKAVEEMNGKDINGQLLFV 361
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS FG++ + ++ D S+GY V F + A +A+ EMNG LL LFV
Sbjct: 213 LYEHFSAFGKILSSKVMSDD--QGSRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFV 268
>gi|409050086|gb|EKM59563.1| hypothetical protein PHACADRAFT_250155 [Phanerochaete carnosa
HHB-10118-sp]
Length = 277
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 39/57 (68%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ FS+FG+V K I+ D+ + S+G+G +T ST EEA + + E+NG L+GR + VD
Sbjct: 94 EEFSRFGRVEKVVIVYDQRSDRSRGFGFITMSTVEEASRCIKELNGVELNGRRIRVD 150
>gi|291407441|ref|XP_002719942.1| PREDICTED: RNA binding motif protein 3 [Oryctolagus cuniculus]
Length = 155
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG +++ ++ D+ S+G+G +TF+ E A A+ MNG+ LDGR + VD+
Sbjct: 22 LEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDH 81
Query: 62 VRPSRR 67
S R
Sbjct: 82 AGKSAR 87
>gi|125536731|gb|EAY83219.1| hypothetical protein OsI_38428 [Oryza sativa Indica Group]
Length = 257
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 40/57 (70%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
D F+ +GQV +A II D+ S+G+G +T+++ EEA A+T ++GK LDGR + V+
Sbjct: 49 DTFANYGQVIEAKIINDRETGRSRGFGFITYASSEEASAAITALDGKDLDGRNIRVN 105
>gi|15231557|ref|NP_189273.1| RNA recognition motif and CCHC-type zinc finger domain-containing
protein [Arabidopsis thaliana]
gi|15983477|gb|AAL11606.1|AF424613_1 AT3g26420/F20C19_14 [Arabidopsis thaliana]
gi|9294301|dbj|BAB02203.1| unnamed protein product [Arabidopsis thaliana]
gi|15451066|gb|AAK96804.1| Unknown protein [Arabidopsis thaliana]
gi|18377412|gb|AAL66872.1| unknown protein [Arabidopsis thaliana]
gi|62320797|dbj|BAD93728.1| RNA-binding protein [Arabidopsis thaliana]
gi|110742443|dbj|BAE99140.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|332643635|gb|AEE77156.1| RNA recognition motif and CCHC-type zinc finger domain-containing
protein [Arabidopsis thaliana]
Length = 245
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 41/65 (63%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ DAF ++G + +A +++DK S+G+G +TF ++ +A+ MNG LDGR + VD
Sbjct: 23 LRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDK 82
Query: 62 VRPSR 66
+P +
Sbjct: 83 AQPHQ 87
>gi|357475273|ref|XP_003607922.1| Poly(A)-binding protein [Medicago truncatula]
gi|355508977|gb|AES90119.1| Poly(A)-binding protein [Medicago truncatula]
Length = 654
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + + +D G SKGYG V F TEE AQKA+ ++NG LL+ + ++V
Sbjct: 138 LHDTFSSFGNILSCKVAVD-GSGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYV 194
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS +G +T ++ D S+G G V FST EEA +AL EMNGK++ + L+V
Sbjct: 332 LKELFSSYGTITSCKVMRDP-NGVSRGSGFVAFSTPEEASRALLEMNGKMVASKPLYV 388
Score = 41.2 bits (95), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F +FG +T A ++ D G SK +G V F + ++A +A+ +NGK +D + +V
Sbjct: 233 FGEFGTITSAVVMRD-GDGKSKCFGFVNFESTDDAARAVEALNGKKIDDKEWYV 285
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVL 57
+ D F+Q GQV + D S GYG V +S ++A +AL +N L+ R +
Sbjct: 50 LYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNNRPI 105
>gi|386812367|ref|ZP_10099592.1| RNA-binding protein [planctomycete KSU-1]
gi|386404637|dbj|GAB62473.1| RNA-binding protein [planctomycete KSU-1]
Length = 115
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 37/60 (61%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AF FG+VT AT+I D TSKG+G V + EAQ A+ +N K L G+++ V+ RP
Sbjct: 20 AFEVFGKVTSATVIKDIFSGTSKGFGFVEMPAKAEAQAAINGLNSKELKGKMIVVNEARP 79
>gi|225441175|ref|XP_002265930.1| PREDICTED: uncharacterized protein LOC100257264 [Vitis vinifera]
Length = 332
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 43/63 (68%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ DAFS++G++ ++ ++M++ +G+G +TF+ + A+ EM+G+ LDGRV+ V+
Sbjct: 23 LEDAFSRYGKILESLVMMERDTGRPRGFGFITFADHRAMEDAIREMHGRELDGRVISVNK 82
Query: 62 VRP 64
+P
Sbjct: 83 AQP 85
>gi|384486188|gb|EIE78368.1| hypothetical protein RO3G_03072 [Rhizopus delemar RA 99-880]
Length = 499
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 39/54 (72%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS +G +T A I+ D+ N S+G+G V F++ E+A +A+TEMNG+++ + ++V
Sbjct: 332 FSVYGVITSAKIMRDEKTNISRGFGFVCFTSPEDATRAVTEMNGRIIGSKPIYV 385
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + I D+ N SKGYG V + T E A+ A+ +NG LL+ R +FV
Sbjct: 132 LHDTFSAFGNILSCKIAHDEQGN-SKGYGFVHYETLEAAESAIKSVNGMLLNDRKVFV 188
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
++ F ++G +T I D TSKG+G V F ++AQ A+ +++ K G+ L+V
Sbjct: 225 LSQLFGKYGTITSCVITRDD-DGTSKGFGFVNFEKHQDAQNAVDDLHKKDFRGQDLYV 281
>gi|293336981|ref|NP_001169115.1| uncharacterized protein LOC100382959 [Zea mays]
gi|223975005|gb|ACN31690.1| unknown [Zea mays]
gi|414887554|tpg|DAA63568.1| TPA: hypothetical protein ZEAMMB73_633512 [Zea mays]
Length = 103
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 39/57 (68%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
D FS FG V +A ++ D KG+G V +S++ EA+KA+ M+GK+L GR++FV+
Sbjct: 39 DIFSPFGTVEEARLMRDHQTGRMKGFGFVKYSSQAEAEKAVKAMDGKILRGRLIFVE 95
>gi|196008415|ref|XP_002114073.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
gi|190583092|gb|EDV23163.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
Length = 622
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F+ FG +T A ++ D+ K S+G+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 323 FANFGTITSAKVMSDE-KGISRGFGFVCFSSPEEATKAVTEMNGRIIISKPLYV 375
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
I D FS FG + I +D+ N SKGY V F T+E A +A+ ++NG LL G+ +FV
Sbjct: 123 IYDTFSAFGNILSCKIALDENGN-SKGYAFVHFETQEAANRAIEKVNGMLLSGKKVFV 179
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
D F Q G++ + ++M S+G+G V++ T E AQKA+ +N K D R ++V
Sbjct: 218 DLFEQCGKIV-SCVVMRDDSGKSRGFGFVSYETHEAAQKAVETLNEKEFDLRRMYV 272
>gi|432865704|ref|XP_004070572.1| PREDICTED: embryonic polyadenylate-binding protein-like [Oryzias
latipes]
Length = 624
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 39/54 (72%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS +G +T A ++ + G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPYGTITSAKVMTEAGQ--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ +AFS FG+ ++ D+ K S+G+G V ++ E+AQKA+ EMNGK ++G++++V
Sbjct: 207 LKEAFSAFGKTLSVRVMRDE-KGRSRGFGFVNYAHHEDAQKAVDEMNGKEMNGKIIYV 263
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + ++ D+ SKGYG V F T+E A +A+ MNG LL+ R +FV +
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--RGSKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGH 172
Query: 62 VR 63
+
Sbjct: 173 FK 174
>gi|346469013|gb|AEO34351.1| hypothetical protein [Amblyomma maculatum]
Length = 139
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 39/57 (68%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+AF++FG+V A ++ D+ SKG+G V ++T E+A + + M+GK LDG V+F +
Sbjct: 54 EAFAKFGEVVHARVVTDRVSGYSKGFGFVKYATLEDAAEGIKGMDGKFLDGWVIFAE 110
>gi|196234692|ref|ZP_03133505.1| RNP-1 like RNA-binding protein [Chthoniobacter flavus Ellin428]
gi|196221240|gb|EDY15797.1| RNP-1 like RNA-binding protein [Chthoniobacter flavus Ellin428]
Length = 126
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ DAF++ G V + ++ DK S+G+ VT +T +EAQKA++ +GK L GR L V+
Sbjct: 19 LQDAFAEAGTVQEVALMQDKFTGRSRGFAFVTMATPDEAQKAISIFHGKTLQGRPLTVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|115520925|gb|ABJ08845.1| putative polyadenylate-binding protein 1 [Squalus acanthias]
Length = 212
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T E A++A+ +MNG LL+ R +FV
Sbjct: 47 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV 102
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F++FG ++ D SKG+G V+F E+AQKA+ EMNGK ++GR ++V
Sbjct: 139 LKEIFNKFGAFLSVKVMTDDS-GRSKGFGFVSFEKHEDAQKAVDEMNGKEINGRQVYV 195
>gi|74199920|dbj|BAE20776.1| unnamed protein product [Mus musculus]
Length = 266
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F +FGQ+ ++ D+G SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 211 FGRFGQILSVKVMTDEG-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 263
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKG+G V F TEE A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVSDE--NGSKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFV 170
>gi|356550257|ref|XP_003543504.1| PREDICTED: cold-inducible RNA-binding protein-like [Glycine max]
Length = 86
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 38/55 (69%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
FS FG VT+A + +D KG+G V+F +E EA+KA MNG++++GR++ V+
Sbjct: 27 FSPFGLVTQADLALDPITKRPKGFGFVSFKSEIEAEKACKAMNGRIVNGRLILVE 81
>gi|344292751|ref|XP_003418089.1| PREDICTED: putative RNA-binding protein 3-like [Loxodonta
africana]
Length = 154
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG +++ ++ D+ S+G+G +TF+ E A A+ MNG+ LDGR + VD+
Sbjct: 22 LEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDH 81
Query: 62 VRPSRR 67
S R
Sbjct: 82 AGKSAR 87
>gi|336386026|gb|EGO27172.1| hypothetical protein SERLADRAFT_434943 [Serpula lacrymans var.
lacrymans S7.9]
Length = 284
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 39/57 (68%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ FS+FG+V K TI+ D+ + S+G+G + ST EEA + + E+NG L+GR + VD
Sbjct: 101 EEFSRFGRVEKVTIVYDQRSDRSRGFGFIKMSTVEEATRCIQELNGVDLNGRRIRVD 157
>gi|300121123|emb|CBK21504.2| unnamed protein product [Blastocystis hominis]
Length = 302
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AFS++G + + T++ D+ S+G G V F+TEE +KA+ EMNG L+GR + V P
Sbjct: 127 AFSKYGNLEECTVLKDRQSGKSRGRGIVRFATEEAMKKAIEEMNGTELEGRAIAVRQFLP 186
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV- 62
D F + G++T + +++++ S+G+G VTF++E AL E NG DGR + V+
Sbjct: 22 DYFQECGEITDSRVMVNRENKKSRGFGFVTFASEAAFNNAL-EKNGAEFDGRTIKVEKAT 80
Query: 63 -RPSR--RYNTDVP 73
RP R + N D P
Sbjct: 81 ERPKRDQKENKDRP 94
>gi|221221302|gb|ACM09312.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 131
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 39/59 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+A+AFS++G + K +IMD+ +G+G V + E+A+ A+ MNG+ LDGR + V+
Sbjct: 21 LAEAFSKYGNIAKCDVIMDRETGRPRGFGFVKYDNAEDAKDAMEGMNGQSLDGRTIRVN 79
>gi|194385818|dbj|BAG65284.1| unnamed protein product [Homo sapiens]
Length = 263
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 39/59 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ FS++GQ+++ ++ D+ S+G+G VTF ++A+ A+ MNGK +DGR + VD
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 80
>gi|115384864|ref|XP_001208979.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114196671|gb|EAU38371.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 157
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
F +FG V A ++ D+ S+G+G VTF++ +EA AL E+N + DGR++ VD
Sbjct: 48 GFEKFGTVDNAIVVKDRDTGRSRGFGFVTFTSPQEADAALNELNNQEFDGRIIRVD 103
>gi|225423629|ref|XP_002274983.1| PREDICTED: glycine-rich RNA-binding protein 2 [Vitis vinifera]
gi|359473083|ref|XP_003631246.1| PREDICTED: glycine-rich RNA-binding protein 2-like [Vitis vinifera]
gi|297738010|emb|CBI27211.3| unnamed protein product [Vitis vinifera]
gi|297738011|emb|CBI27212.3| unnamed protein product [Vitis vinifera]
Length = 140
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 40/65 (61%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + FS+FGQ+ + ++ DK +GY + +++++ A AL M+ K LDGRV+ V+
Sbjct: 54 LQEEFSKFGQIVEVDVVKDKAAKRPRGYAFIQYTSQDHAMLALENMDHKYLDGRVVCVEL 113
Query: 62 VRPSR 66
+P +
Sbjct: 114 AKPGK 118
>gi|358056531|dbj|GAA97500.1| hypothetical protein E5Q_04178 [Mixia osmundae IAM 14324]
Length = 287
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD- 60
+ D F++ G+V K ++ D+ S+G+ VT +E++A+KA+ ++NG+ +DGR + VD
Sbjct: 65 LEDVFTRIGEVDKVVVVYDQRSERSRGFAFVTMRSEDDAEKAIADLNGQEIDGRRVRVDY 124
Query: 61 --NVRPSR 66
RP R
Sbjct: 125 SLTTRPHR 132
>gi|366987527|ref|XP_003673530.1| hypothetical protein NCAS_0A05890 [Naumovozyma castellii CBS 4309]
gi|342299393|emb|CCC67147.1| hypothetical protein NCAS_0A05890 [Naumovozyma castellii CBS 4309]
Length = 415
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
F G V A +IM++G + S+GYG V F + A+KA+ EM GK +DGR + VD
Sbjct: 182 FEHIGGVVSARVIMERGTDRSRGYGYVDFEDKSYAEKAIKEMQGKEIDGREINVD 236
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
I++ FS++G++ I KG+G V ++ E+A+KAL + G+ +D R + +D
Sbjct: 278 ISELFSKYGEIISVRIPTHPETEQPKGFGYVQYTNVEDAKKALEGLQGEYIDNRPVRLDY 337
Query: 62 VRP 64
P
Sbjct: 338 STP 340
>gi|242055771|ref|XP_002457031.1| hypothetical protein SORBIDRAFT_03g047450 [Sorghum bicolor]
gi|241929006|gb|EES02151.1| hypothetical protein SORBIDRAFT_03g047450 [Sorghum bicolor]
Length = 146
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ DAFSQ+G V +I SKG+G V FS+E +A AL ++NG++LDGR + V
Sbjct: 75 LKDAFSQYGDVIAVRVICHPTTGKSKGFGFVKFSSENQAAAALQKLNGQVLDGRNIRV 132
>gi|119589928|gb|EAW69522.1| cold inducible RNA binding protein, isoform CRA_c [Homo sapiens]
gi|119589930|gb|EAW69524.1| cold inducible RNA binding protein, isoform CRA_c [Homo sapiens]
Length = 297
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ FS++GQ+++ ++ D+ S+G+G VTF ++A+ A+ MNGK +DGR + VD
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 81
Query: 62 VRPS 65
S
Sbjct: 82 AGKS 85
>gi|328850756|gb|EGF99917.1| hypothetical protein MELLADRAFT_118186 [Melampsora larici-populina
98AG31]
Length = 667
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 38/59 (64%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
F +FG+V A +I ++G SKG+G V F++ E+A+KA+ M G +DGR + VD P
Sbjct: 421 FEKFGEVISARVITERGTERSKGFGYVDFASPEDARKAVEAMAGTEIDGRTINVDFSAP 479
>gi|118488717|gb|ABK96169.1| unknown [Populus trichocarpa]
Length = 241
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AF ++G V +A IIMD+ S+G+G VT+++ EEA A+ M+G+ L GR + V+
Sbjct: 56 LKEAFDKYGNVVEARIIMDRDTGRSRGFGFVTYTSSEEASSAIQAMDGQDLHGRRVRVNY 115
Query: 62 V--RPSRRY 68
RP R +
Sbjct: 116 ATERPQRTF 124
>gi|20152613|emb|CAD29693.1| putative glycine rich protein [Rumex obtusifolius]
Length = 168
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 40/60 (66%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AFS +GQV ++ II D+ S+G+G VTFS+E+ + A+ MNG+ LDGR + V+ +
Sbjct: 26 AFSNYGQVLESKIINDRETGRSRGFGFVTFSSEQAMRDAIEGMNGQDLDGRNITVNEAQS 85
>gi|312283439|dbj|BAJ34585.1| unnamed protein product [Thellungiella halophila]
Length = 259
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 41/65 (63%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ DAF ++G + +A +++DK S+G+G +TF ++ +A+ MNG LDGR + VD
Sbjct: 23 LRDAFEKYGHLLEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDK 82
Query: 62 VRPSR 66
+P +
Sbjct: 83 AQPHQ 87
>gi|357473263|ref|XP_003606916.1| Glycine-rich RNA binding protein [Medicago truncatula]
gi|355507971|gb|AES89113.1| Glycine-rich RNA binding protein [Medicago truncatula]
Length = 190
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 41/60 (68%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AFS+FG++T + +I D+ S+G+G VTF+ E+ + A+ EMNG+ +DGR + V+ +
Sbjct: 27 AFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAIEEMNGQDIDGRNITVNEAQS 86
>gi|432915990|ref|XP_004079241.1| PREDICTED: cold-inducible RNA-binding protein-like [Oryzias
latipes]
Length = 174
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 37/59 (62%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+A AF ++G + K +I DK S+G+G V + E+A+ AL MNGK LDGR + VD
Sbjct: 21 LAAAFGKYGTIEKVDVIRDKETGRSRGFGFVKYDNVEDAKDALDAMNGKTLDGRAIRVD 79
>gi|344304706|gb|EGW34938.1| hypothetical protein SPAPADRAFT_58066 [Spathaspora passalidarum
NRRL Y-27907]
Length = 508
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F FG +T A +++D+ SKG+G V FS+ EEA KA+TEMN +++ G+ L+V
Sbjct: 227 LEEEFKPFGSITSAKVMVDEA-GKSKGFGFVCFSSPEEATKAITEMNQRMILGKPLYV 283
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 6 FSQFGQVTKATIIMDKGKN-TSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
F FG +T +I ++K ++ SKG+G V + T E A KA+ E+N K ++G+ ++V +
Sbjct: 128 FVPFGTIT--SIYLEKDQDGKSKGFGFVNYETHESAVKAVEELNDKEINGQKIYVGRAQK 185
Query: 65 SR 66
R
Sbjct: 186 KR 187
>gi|171686972|ref|XP_001908427.1| hypothetical protein [Podospora anserina S mat+]
gi|170943447|emb|CAP69100.1| unnamed protein product [Podospora anserina S mat+]
Length = 663
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 40/62 (64%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
FSQ V AT+++D TS+GYG V+F+ E+A +A ++N +LLDGR L +D +P
Sbjct: 58 FSQHYPVKHATVVLDPKTKTSRGYGFVSFADPEDAIEAKIKLNNELLDGRRLRLDIAQPR 117
Query: 66 RR 67
R
Sbjct: 118 LR 119
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+A F FG++ A + KGK + G+G VT + A+KAL +NGK +DGR + VD
Sbjct: 166 QLAKLFQPFGKIKFADLPNSKGKLS--GFGFVTLRGRKNAEKALEAINGKEIDGRTVAVD 223
>gi|345313668|ref|XP_001512332.2| PREDICTED: cold-inducible RNA-binding protein-like
[Ornithorhynchus anatinus]
Length = 270
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ FS++GQ+++ ++ D+ S+G+G VTF ++A+ A+ MNGK +DGR + VD
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 81
Query: 62 VRPS 65
S
Sbjct: 82 AGKS 85
>gi|224012523|ref|XP_002294914.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
gi|220969353|gb|EED87694.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
Length = 612
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 39/59 (66%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
++ D FS G +T A ++ D S+G+G V +ST E+A +A+ EMNGK++ G+ +FV
Sbjct: 310 VLRDEFSAMGTITSARVMKDLKTGISRGFGFVCYSTPEDATRAVNEMNGKIILGKPIFV 368
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
+ D FS FG + ++ DK SKGYG V + T E A A+ +++G L+DG+
Sbjct: 113 LYDTFSLFGNILSCKVVTDKATGLSKGYGYVHYETNEAAASAIEKLDGMLIDGK 166
>gi|225463887|ref|XP_002264022.1| PREDICTED: uncharacterized protein LOC100256416 isoform 1 [Vitis
vinifera]
gi|359493015|ref|XP_003634493.1| PREDICTED: uncharacterized protein LOC100256416 isoform 2 [Vitis
vinifera]
Length = 207
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 43/65 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AF +FG + +A +++DK S+G+G V+F ++ + A+ EM+G LDGR + VD
Sbjct: 23 LKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVSFDDKQAMEDAIKEMHGMDLDGRSITVDK 82
Query: 62 VRPSR 66
+P++
Sbjct: 83 AQPNQ 87
>gi|353235522|emb|CCA67534.1| related to glycine-rich RNA-binding protein [Piriformospora
indica DSM 11827]
Length = 236
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD- 60
+ +AF Q+G V + ++ D+ S+G+G VT+S+EEEA A++ +N LDGR + V+
Sbjct: 19 LREAFRQYGNVVDSIVMRDRETGRSRGFGFVTYSSEEEASNAISGLNETSLDGRQIKVNL 78
Query: 61 -NVRP 64
N RP
Sbjct: 79 ANARP 83
>gi|6911144|gb|AAF31403.1|AF200322_1 putative glycine-rich RNA binding protein 3 [Catharanthus roseus]
Length = 164
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 42/63 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+++AFSQ+G++ ++ II D+ S+G+G VTF E+ + A+ MNG+ LDGR + V+
Sbjct: 24 LSEAFSQYGEILESKIINDRETGRSRGFGFVTFKDEQSMRDAIEGMNGQTLDGRNITVNE 83
Query: 62 VRP 64
+
Sbjct: 84 AQS 86
>gi|224131664|ref|XP_002321147.1| predicted protein [Populus trichocarpa]
gi|222861920|gb|EEE99462.1| predicted protein [Populus trichocarpa]
Length = 120
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVL 57
+ DAFS FG VT+ I+ D+ S+G+G V+F E+EA A M+GK L GR L
Sbjct: 34 LKDAFSSFGDVTEVNILYDRNSGRSRGFGFVSFCKEDEAVSAKDAMDGKALLGRPL 89
>gi|62857699|ref|NP_001017228.1| cold-inducible RNA-binding protein [Xenopus (Silurana)
tropicalis]
gi|123910273|sp|Q28IQ9.1|CIRBP_XENTR RecName: Full=Cold-inducible RNA-binding protein; AltName:
Full=Glycine-rich RNA-binding protein CIRP
gi|89268649|emb|CAJ83306.1| cold inducible RNA binding protein [Xenopus (Silurana)
tropicalis]
Length = 166
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
FS++GQV + ++ D+ S+G+G VTF E+A+ A+ MNGK +DGR + VD S
Sbjct: 26 FSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQAGKS 85
>gi|317106694|dbj|BAJ53195.1| JHL03K20.4 [Jatropha curcas]
Length = 642
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS+FG +T ++ D S+G G V FST EEA +ALTEMNGK++ + L+V
Sbjct: 327 LKELFSEFGTITSCKVMRDP-NGVSRGSGFVAFSTAEEASRALTEMNGKMVVSKPLYV 383
Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + + D S GYG V F EE A+ A+ ++NG LL+ + ++V
Sbjct: 133 LHDTFSAFGSILSCKVATDS-LGQSLGYGFVQFDNEESAKNAIDKLNGMLLNDKQVYV 189
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F ++G +T A ++M G S+ +G V F ++A +++ +NGK D + +V
Sbjct: 228 FGEYGTITSA-VVMRDGNGKSRCFGFVNFENPDDAAQSVEALNGKTFDEKEWYV 280
>gi|281345572|gb|EFB21156.1| hypothetical protein PANDA_005635 [Ailuropoda melanoleuca]
Length = 605
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FSQFG++ ++ D + S+G+G V F EEAQKA+ +MNGK + GR+L+V
Sbjct: 207 LQDLFSQFGKMLSVKVMRDDIGH-SRGFGFVNFEKHEEAQKAVMDMNGKEVSGRLLYV 263
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS +G +T A ++ + G SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPYGVITSAKVMTEGGH--SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 365
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + ++ D + S+G+G V F T E A +A+ MNG LL+ R +FV +
Sbjct: 115 LYDTFSTFGNILSCKVVCDD--HGSRGFGFVHFETHEAAHQAIATMNGMLLNDRKVFVGH 172
Query: 62 VRPSRR 67
+ SRR
Sbjct: 173 FK-SRR 177
>gi|33504434|emb|CAD44189.1| putative poly(A) binding protein [Mangifera indica]
Length = 130
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FSQFG +T ++ D S+G G V F+T EEA +A+ EMNGK++ G+ L+V
Sbjct: 34 FSQFGSITSCKVMRDP-NGISRGSGFVAFTTPEEASRAILEMNGKMVVGKPLYV 86
>gi|52346030|ref|NP_001005062.1| embryonic polyadenylate-binding protein [Xenopus (Silurana)
tropicalis]
gi|82235830|sp|Q6DEY7.1|EPAB_XENTR RecName: Full=Embryonic polyadenylate-binding protein;
Short=Embryonic poly(A)-binding protein; Short=ePABP
gi|49899948|gb|AAH76956.1| MGC89376 protein [Xenopus (Silurana) tropicalis]
Length = 629
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS +G +T A ++ + G SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPYGTITSAKVMTEGGH--SKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS FG ++MD S+G+G V + EEAQKA++EMNGK ++GR+++V
Sbjct: 207 LREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYV 263
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + ++ D+ + S+GYG V F T+E A +A+ MNG LL+ R +FV +
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGH 172
Query: 62 VRPSRR 67
+ SRR
Sbjct: 173 FK-SRR 177
>gi|20197660|gb|AAM15185.1| putative RNA-binding glycine rich protein (RGP-2) [Arabidopsis
thaliana]
gi|20197669|gb|AAD42009.2| putative RNA-binding glycine rich protein (RGP-2) [Arabidopsis
thaliana]
gi|21553954|gb|AAM63035.1| putative RNA-binding glycine rich protein RGP-2 [Arabidopsis
thaliana]
Length = 63
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 37/53 (69%)
Query: 19 MDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYNTD 71
MDK + KG+ VTFS++EEA+KAL E+N +L+DGRV+ +D + ++ D
Sbjct: 1 MDKIRCRPKGFAYVTFSSKEEAEKALLELNAQLVDGRVVILDTTKAAKHNPPD 53
>gi|301763992|ref|XP_002917400.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 611
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FSQFG++ ++ D + S+G+G V F EEAQKA+ +MNGK + GR+L+V
Sbjct: 207 LQDLFSQFGKMLSVKVMRDDIGH-SRGFGFVNFEKHEEAQKAVMDMNGKEVSGRLLYV 263
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS +G +T A ++ + G SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPYGVITSAKVMTEGGH--SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 365
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + ++ D + S+G+G V F T E A +A+ MNG LL+ R +FV +
Sbjct: 115 LYDTFSTFGNILSCKVVCDD--HGSRGFGFVHFETHEAAHQAIATMNGMLLNDRKVFVGH 172
Query: 62 VRPSRR 67
+ SRR
Sbjct: 173 FK-SRR 177
>gi|293332827|ref|NP_001169335.1| uncharacterized protein LOC100383202 [Zea mays]
gi|224028769|gb|ACN33460.1| unknown [Zea mays]
gi|413918115|gb|AFW58047.1| hypothetical protein ZEAMMB73_457780 [Zea mays]
Length = 714
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 33/54 (61%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FSQFG + A +I D+ SKGYG V +S EA A+ MNG L+GRV+ V
Sbjct: 440 FSQFGDIVMAKVIKDRNTGQSKGYGFVKYSDVSEANAAIAAMNGHHLEGRVIAV 493
>gi|213510736|ref|NP_001133148.1| cold inducible RNA binding protein [Salmo salar]
gi|197632151|gb|ACH70799.1| hyperosmotic glycine rich protein-like [Salmo salar]
gi|221219968|gb|ACM08645.1| Cold-inducible RNA-binding protein [Salmo salar]
gi|221221054|gb|ACM09188.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 154
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 39/59 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+A+AFS++G + K +IMD+ +G+G V + E+A+ A+ MNG+ LDGR + V+
Sbjct: 21 LAEAFSKYGNIAKCDVIMDRETGRPRGFGFVKYDNAEDAKDAMEGMNGQSLDGRTIRVN 79
>gi|187373099|gb|ACD03270.1| glycine-rich RNA-binding protein [Nicotiana tabacum]
Length = 157
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 40/62 (64%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ DAFSQ+G++ + II D+ S+G+G VTF E+ + A+ MNG+ LDGR + V+
Sbjct: 22 LGDAFSQYGEIVDSKIINDRETGRSRGFGFVTFKDEQAMRDAIEGMNGQDLDGRNITVNE 81
Query: 62 VR 63
+
Sbjct: 82 AQ 83
>gi|41054151|ref|NP_956133.1| polyadenylate-binding protein 1-like [Danio rerio]
gi|27881953|gb|AAH44513.1| Zgc:55855 [Danio rerio]
gi|182890236|gb|AAI65470.1| Zgc:55855 protein [Danio rerio]
Length = 620
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + ++ D+ N SKGYG V F T+E A +A+ MNG LL+ R +FV +
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGH 172
Query: 62 VR 63
+
Sbjct: 173 FK 174
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F+ +G +T A ++ D G S+G+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FAPYGTITSAKVMTDGGH--SRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F++FG+ ++ D+ + S+G+G V F +A++A+TEMNGK L+GRVL+V
Sbjct: 207 LKNIFTEFGKTLSVCVMTDE-RGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYV 263
>gi|291227649|ref|XP_002733794.1| PREDICTED: polyadenylate-binding protein 1-like [Saccoglossus
kowalevskii]
Length = 655
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
D FS FG + ++ D+ N SKGYG V F+TEE A K++ ++NG LL+G+ ++V
Sbjct: 117 DTFSAFGDILSCKVVCDE--NGSKGYGFVHFATEEAANKSIEKVNGMLLNGKKVYV 170
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F FG +T A ++ + G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 315 FMPFGTITSAKVMSEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 366
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 34/58 (58%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F ++G++ ++ D +KG+G V F +A+ A ++N K ++GR+L+V
Sbjct: 207 LREMFERYGKIVSHKVMQDDHSGRNKGFGFVCFEDPIDAENACDDLNMKDINGRILYV 264
>gi|241947949|ref|XP_002416697.1| pre-rRNA processing and ribosome biogenesis, nuclear localization
sequence binding, nucleolar protein, putative [Candida
dubliniensis CD36]
gi|223640035|emb|CAX44279.1| pre-rRNA processing and ribosome biogenesis, nuclear localization
sequence binding, nucleolar protein, putative [Candida
dubliniensis CD36]
Length = 423
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
F G V A +IM++ S+GYG V F T+ A+KAL EM GK +DGR + +D
Sbjct: 216 FEHIGGVISARVIMERATGKSRGYGYVDFETKSAAEKALEEMQGKEIDGRPINLD 270
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
F ++G V + KG+G V FS+ +EA+ AL +NG+ ++GR +D P
Sbjct: 318 FGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEALNGEYIEGRPCRLDFSTPR 377
Query: 66 RRYNT 70
NT
Sbjct: 378 DNSNT 382
>gi|169861389|ref|XP_001837329.1| single-stranded DNA binding protein [Coprinopsis cinerea
okayama7#130]
gi|116502051|gb|EAU84946.1| single-stranded DNA binding protein [Coprinopsis cinerea
okayama7#130]
Length = 569
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+A F+ G++ AT+ MD+ S+G+G V F+T E AQKAL E+NGK +D R + VD
Sbjct: 342 WLASEFASCGEIESATVQMDRNTGKSRGFGYVHFTTVEAAQKAL-ELNGKEIDNRPIKVD 400
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
F+ +G V + D+ KG+G V F E A+KA NG LDGR + +D +P
Sbjct: 447 FNDYG-VKSVRLPTDRESGRPKGFGYVEFEDVEGAKKAFEANNGADLDGRPIRLDYSQP 504
>gi|37681851|gb|AAQ97803.1| poly(A)-binding protein, cytoplasmic 1 [Danio rerio]
Length = 620
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + ++ D+ N SKGYG V F T+E A +A+ MNG LL+ R +FV +
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGH 172
Query: 62 VR 63
+
Sbjct: 173 FK 174
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F+ +G +T A ++ D G S+G+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FAPYGTITSAKVMTDGGH--SRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F++FG+ ++ D+ + S+G+G V F +A++A+TEMNGK L+GRVL+V
Sbjct: 207 LKNIFTEFGKTLSVCVMTDE-RGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYV 263
>gi|82623423|gb|ABB87126.1| putative glycine-rich RNA binding protein-like [Solanum
tuberosum]
Length = 178
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 42/63 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+++AFSQ+G+V ++ II D+ S+G+G VTF E+ + A+ MNG+ LDGR + V+
Sbjct: 22 LSEAFSQYGEVVESKIINDRETGRSRGFGFVTFKDEQAMRDAIEGMNGQDLDGRNITVNE 81
Query: 62 VRP 64
+
Sbjct: 82 AQS 84
>gi|296235404|ref|XP_002762884.1| PREDICTED: putative RNA-binding protein 3 [Callithrix jacchus]
Length = 159
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG +++ ++ D+ S+G+G +TF+ E A A+ MNG+ LDGR + VD+
Sbjct: 22 LEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDH 81
Query: 62 VRPSRR 67
S R
Sbjct: 82 AGKSAR 87
>gi|226358689|gb|ACO51197.1| poly A binding protein, cytoplasmic 1 a [Hypophthalmichthys
nobilis]
Length = 290
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T E A++A+ +MNG LL+ R +FV
Sbjct: 42 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV 97
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 36/47 (76%), Gaps = 2/47 (4%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLL 52
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++
Sbjct: 241 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIV 285
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS++G ++ D+ SKG+G V+F E+AQ+A+ EMNGK ++G+ ++V
Sbjct: 134 LKEIFSKYGPALSIRVMTDES-GKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYV 190
>gi|212546539|ref|XP_002153423.1| glycine-rich RNA-binding protein, putative [Talaromyces marneffei
ATCC 18224]
gi|210064943|gb|EEA19038.1| glycine-rich RNA-binding protein, putative [Talaromyces marneffei
ATCC 18224]
Length = 135
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
F +FG + +A +I D+ N S+G+G V FST+ EA A+ MN + DGRV+ VD
Sbjct: 21 GFEKFGTIEEAIVIKDRDTNRSRGFGFVRFSTDAEADAAIEGMNNQDFDGRVIRVD 76
>gi|115448473|ref|NP_001048016.1| Os02g0730800 [Oryza sativa Japonica Group]
gi|46390469|dbj|BAD15930.1| RNA recognition motif (RRM)-containing protein-like [Oryza sativa
Japonica Group]
gi|46390865|dbj|BAD16369.1| RNA recognition motif (RRM)-containing protein-like [Oryza sativa
Japonica Group]
gi|113537547|dbj|BAF09930.1| Os02g0730800 [Oryza sativa Japonica Group]
gi|218191513|gb|EEC73940.1| hypothetical protein OsI_08808 [Oryza sativa Indica Group]
Length = 399
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
AF FG++ + IIMDK SKGY + ++TEE AL MNG++++G ++ VD
Sbjct: 314 AFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEEAGGAALKAMNGQIINGWMIVVD 369
>gi|407262829|ref|XP_003945671.1| PREDICTED: putative RNA-binding protein 3-like [Mus musculus]
Length = 154
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG +++ ++ D+ S+G+G +TF+ E A A+ MNG+ LDGR + VD+
Sbjct: 22 LEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDH 81
Query: 62 V 62
Sbjct: 82 A 82
>gi|225458678|ref|XP_002284923.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147773643|emb|CAN76464.1| hypothetical protein VITISV_017035 [Vitis vinifera]
Length = 640
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS+FG +T ++ D S+G G V FST EEA +ALTEMNGK++ + L+V
Sbjct: 316 LKELFSEFGTITSCKVMRDP-SGISRGSGFVAFSTSEEASRALTEMNGKMVVSKPLYV 372
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + I D SKGYG V F EE AQ A+ ++NG L++ + ++V
Sbjct: 122 LHDTFSAFGNILSCKIATDP-SGQSKGYGFVQFDNEESAQNAIDKLNGMLINDKQVYV 178
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVL 57
+ D F Q GQV + D S GYG V +S ++A +AL +N L+G+ +
Sbjct: 34 LYDLFIQAGQVLSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDLLNFTPLNGKPI 89
>gi|2267567|gb|AAB63581.1| glycine-rich RNA binding protein 1 [Pelargonium x hortorum]
gi|2267569|gb|AAB63582.1| glycine-rich RNA binding protein 2 [Pelargonium x hortorum]
Length = 166
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
AFSQ+G+V ++ II D+ S+G+G VTFS E+ A+ MNG+ LDGR + V+ +
Sbjct: 27 AFSQYGEVVESKIINDRETGRSRGFGFVTFSNEKSMNDAIEGMNGQNLDGRNITVNEAQ 85
>gi|330843751|ref|XP_003293810.1| hypothetical protein DICPUDRAFT_84328 [Dictyostelium purpureum]
gi|325075834|gb|EGC29677.1| hypothetical protein DICPUDRAFT_84328 [Dictyostelium purpureum]
Length = 292
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 42/65 (64%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D F+QFG++ + TI++D S+G+G VTF + +EA A++ ++ LDG V+ V+
Sbjct: 84 LRDTFAQFGKIAECTILVDPNTKESRGFGFVTFLSSDEATDAISRLDSSKLDGNVIRVEK 143
Query: 62 VRPSR 66
R S+
Sbjct: 144 SRRSK 148
>gi|221121498|ref|XP_002156904.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Hydra
magnipapillata]
Length = 635
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS +G +T A ++ D+ K SKG+G V FS+ +EA KA+TEMNG++L + L+V
Sbjct: 314 FSTYGTITSAKVMKDE-KGISKGFGFVCFSSPDEATKAVTEMNGRILVTKPLYV 366
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ DAFS FG + I +D KN S+GYG V + T+E A +A+ ++NG +L+ + +FV
Sbjct: 115 LYDAFSAFGNILSCKIAVD-SKNVSRGYGFVHYETKEAAHEAIAKVNGMMLNDKKVFV 171
Score = 34.3 bits (77), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F + G++T ++ + GK SKG+G V F E A+ A+ E+NG ++GR L V
Sbjct: 208 LKEMFGKHGEITSCVVMAESGK--SKGFGFVAFEAPEAAEAAVNELNGLEIEGRKLVV 263
>gi|294659673|ref|XP_002770625.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
gi|218511736|sp|Q6BI95.2|PABP_DEBHA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|199434145|emb|CAR65959.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
Length = 627
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 42/59 (71%), Gaps = 3/59 (5%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F FG +T A +++D+ GK SKG+G V FS+ EEA KA+TEMN +++ G+ L+V
Sbjct: 351 LEEEFKPFGSITSARVMVDETGK--SKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYV 407
Score = 38.5 bits (88), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRV--LF 58
++ + FS GQV + D S GY V F E+ +KA+ ++N L++GR +
Sbjct: 66 LLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEGRPCRIM 125
Query: 59 VDNVRPSRRYNTD 71
PS R N D
Sbjct: 126 WSQRDPSLRRNGD 138
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
F +G++T + D + SKG+G V F E A KA+ E+N K ++G+ ++V +
Sbjct: 252 FEAYGKITSIYLEKDH-EGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKK 310
Query: 66 R 66
R
Sbjct: 311 R 311
>gi|406701793|gb|EKD04905.1| hypothetical protein A1Q2_00851 [Trichosporon asahii var. asahii
CBS 8904]
Length = 752
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D F+ FGQV A ++ D+ S+GYG V+F EA +AL MNG L L+V
Sbjct: 560 LRDTFAPFGQVVNARVMRDEC-GRSRGYGFVSFLRAHEASQALNSMNGAKLGSGTLYVAY 618
Query: 62 VRPSRRYN 69
+P R+YN
Sbjct: 619 HQPRRQYN 626
>gi|2226370|gb|AAC50020.1| RNA-binding protein [Nicotiana glutinosa]
Length = 156
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 40/63 (63%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ DAFSQ+G++ + II D+ S+G+G VTF E+ + A+ MNG+ LDGR + V+
Sbjct: 22 LGDAFSQYGEILDSKIINDRETGRSRGFGFVTFKDEQAMRDAIEGMNGQDLDGRNITVNE 81
Query: 62 VRP 64
+
Sbjct: 82 AQS 84
>gi|212274941|ref|NP_001130982.1| hypothetical protein [Zea mays]
gi|194690622|gb|ACF79395.1| unknown [Zea mays]
gi|413951564|gb|AFW84213.1| hypothetical protein ZEAMMB73_909652 [Zea mays]
Length = 142
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 36/56 (64%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVL 57
+ DAFS FG VT+ I+ DK S+G+G V FS + EA+ A M+GK++ GR L
Sbjct: 64 LTDAFSSFGTVTEVRIMYDKNSGRSRGFGFVHFSNDNEAKCAKDAMDGKVMLGRPL 119
>gi|7689377|gb|AAF67755.1|AF255335_1 poly(A)-binding protein [Spisula solidissima]
Length = 286
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 39/54 (72%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++ + G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 230 FSAFGTITSAKVMTEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIIVAKPLYV 281
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + I+ D+ + S+GYG V F TEE A+ A+ ++NG LL+G+ +FV
Sbjct: 31 LYDTFSAFGNILSCKIVSDE--HGSRGYGFVHFETEEAARNAIEKVNGMLLNGKKVFV 86
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV--R 63
F FG++ A + M +G+G V++ E A+KA+TEMN K + + L+V R
Sbjct: 127 FETFGKIISAKV-MTGYDGKGRGFGFVSYEEPEAAEKAVTEMNNKTFEEKTLYVGRAQKR 185
Query: 64 PSRRYNTDVPLARLK 78
R+ RLK
Sbjct: 186 AERQAELKDKFDRLK 200
>gi|406676693|ref|ZP_11083878.1| hypothetical protein HMPREF1170_02086 [Aeromonas veronii AMC35]
gi|423201900|ref|ZP_17188479.1| hypothetical protein HMPREF1167_02062 [Aeromonas veronii AER39]
gi|423207067|ref|ZP_17193623.1| hypothetical protein HMPREF1168_03258 [Aeromonas veronii AMC34]
gi|423209269|ref|ZP_17195823.1| hypothetical protein HMPREF1169_01341 [Aeromonas veronii AER397]
gi|404615847|gb|EKB12806.1| hypothetical protein HMPREF1167_02062 [Aeromonas veronii AER39]
gi|404617127|gb|EKB14063.1| hypothetical protein HMPREF1169_01341 [Aeromonas veronii AER397]
gi|404621360|gb|EKB18249.1| hypothetical protein HMPREF1168_03258 [Aeromonas veronii AMC34]
gi|404625007|gb|EKB21824.1| hypothetical protein HMPREF1170_02086 [Aeromonas veronii AMC35]
Length = 93
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
FSQFGQV K II+D+ SKG+G + +A+KA+ ++G + GR + V+ +P
Sbjct: 21 FSQFGQVDKVDIIIDRDTGQSKGFGFIEMPVNGDAEKAIAGLHGTEVGGRTITVNQAKPK 80
Query: 66 RRYNTDVPLAR 76
TD P R
Sbjct: 81 ----TDAPRGR 87
>gi|402589265|gb|EJW83197.1| RNA recognition domain-containing protein, partial [Wuchereria
bancrofti]
Length = 231
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 35/51 (68%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
AF FG++++A +I D SKGYG V+F +E AQKA+ EMNG+++ R
Sbjct: 40 AFESFGEISEAKVIRDPQTLKSKGYGFVSFPVKENAQKAIEEMNGQMIGRR 90
>gi|403215569|emb|CCK70068.1| hypothetical protein KNAG_0D03220 [Kazachstania naganishii CBS
8797]
Length = 399
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 37/60 (61%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ + F+ G V A +IM++G + S+GYG V F A+KAL EM GK +DGR + VD
Sbjct: 164 WLKNEFAPIGGVVSARVIMERGTDRSRGYGYVDFEDISYAEKALKEMQGKEIDGRPINVD 223
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
F +FG++ I KG+G V ++ E+A+KAL + G+ ++ R + +D P
Sbjct: 270 FGKFGEIISVRIPTHPETEQPKGFGYVQYTNTEDAKKALDALQGESINDRPVRLDFSTP 328
>gi|392346932|ref|XP_230831.6| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Rattus
norvegicus]
Length = 609
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FSQFG+ T++ +M S+G+G + F EEAQKA+ MNGK + G++L+V
Sbjct: 207 LQDLFSQFGK-TQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYV 263
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS +G +T A ++ + SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 310 LKEVFSTYGVITSAKVMTESSH--SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 365
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + + ++ ++ + S+G+G V F T E AQKA+ MNG LL+ R +FV +
Sbjct: 115 LYDTFSTFGSILSSKVVYNE--HGSRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGH 172
Query: 62 VR 63
+
Sbjct: 173 FK 174
>gi|302142286|emb|CBI19489.3| unnamed protein product [Vitis vinifera]
Length = 621
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS+FG +T ++ D S+G G V FST EEA +ALTEMNGK++ + L+V
Sbjct: 316 LKELFSEFGTITSCKVMRDP-SGISRGSGFVAFSTSEEASRALTEMNGKMVVSKPLYV 372
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + I D SKGYG V F EE AQ A+ ++NG L++ + ++V
Sbjct: 122 LHDTFSAFGNILSCKIATDP-SGQSKGYGFVQFDNEESAQNAIDKLNGMLINDKQVYV 178
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVL 57
+ D F Q GQV + D S GYG V +S ++A +AL +N L+G+ +
Sbjct: 34 LYDLFIQAGQVLSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDLLNFTPLNGKPI 89
>gi|194334049|ref|YP_002015909.1| RNP-1 like RNA-binding protein [Prosthecochloris aestuarii DSM
271]
gi|194311867|gb|ACF46262.1| RNP-1 like RNA-binding protein [Prosthecochloris aestuarii DSM
271]
Length = 90
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AF +FG V+ A II DK SKG+G V S+ ++A +A+ +N L+GR + V+
Sbjct: 17 LREAFGEFGDVSSANIITDKFTGRSKGFGFVEMSSSDDANEAIESLNDTDLNGRTIKVNE 76
Query: 62 V-----RPSRRY 68
RP+RRY
Sbjct: 77 AKPRAERPARRY 88
>gi|387914322|gb|AFK10770.1| cold-inducible RNA-binding protein-like protein [Callorhinchus
milii]
gi|392876160|gb|AFM86912.1| cold-inducible RNA-binding protein-like protein [Callorhinchus
milii]
Length = 133
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 39/59 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ + FS++GQ+++ +I D+ S+G+G +TF +A+ AL MNGK +DGR + VD
Sbjct: 21 LEEVFSEYGQISEVRVIKDRDTQLSRGFGFITFENPGDAKDALLAMNGKSIDGRQIRVD 79
>gi|330830028|ref|YP_004392980.1| RNA-binding protein [Aeromonas veronii B565]
gi|328805164|gb|AEB50363.1| RNA-binding protein [Aeromonas veronii B565]
Length = 82
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
FSQFGQV K II+D+ SKG+G + +A+KA+ ++G + GR + V+ +P
Sbjct: 10 FSQFGQVDKVDIIIDRDTGQSKGFGFIEMPVNGDAEKAIAGLHGTEVGGRTITVNQAKP- 68
Query: 66 RRYNTDVPLAR 76
TD P R
Sbjct: 69 ---KTDAPRGR 76
>gi|318087106|gb|ADV40145.1| putative apoptosis-promoting RNA-binding protein TIA-1/TIAR
[Latrodectus hesperus]
Length = 332
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
D FS FG + + D+ N SKGYG V F TEE A A+ ++NG LL+GR +FV
Sbjct: 99 DTFSAFGNILSCKVATDEESN-SKGYGFVHFETEEAANNAIQKVNGMLLNGRKVFVGKFV 157
Query: 64 P 64
P
Sbjct: 158 P 158
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 41/59 (69%), Gaps = 3/59 (5%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F ++G++T A ++ D+ GK KG+G V+F E A+KA+ ++N K L+G+VL+V
Sbjct: 190 LREMFEKYGKITSAKVMADETGK--PKGFGFVSFEDPENAEKAVNDLNNKELNGKVLYV 246
>gi|82595449|ref|XP_725855.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23481012|gb|EAA17420.1| polyA binding protein-related [Plasmodium yoelii yoelii]
Length = 859
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F +G +T A ++ D K+ SKG+G V F T EEA KA+TEM+ K+++G+ L+V
Sbjct: 426 LKELFEPYGTITSAKVMKDD-KDQSKGFGFVCFGTHEEANKAVTEMHLKIINGKPLYV 482
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 4 DAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN- 61
D FS FG + + D+ GK SK YG V + EE A++A+ ++NG L + ++V +
Sbjct: 122 DTFSMFGNILSCKVATDEFGK--SKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYVGHF 179
Query: 62 VRPSRRYNTDVPLARLKI 79
++ S R D L +
Sbjct: 180 IKKSERATNDTKFTNLYV 197
>gi|404403808|ref|ZP_10995392.1| RNP-1 like RNA-binding protein [Alistipes sp. JC136]
Length = 105
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 40/63 (63%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + F+QFG+V A +I D+ S+G+G V +E+A+KA+ ++NG +G+ + V+
Sbjct: 17 LGNLFAQFGEVASANVITDRETGRSRGFGFVEMPDDEQARKAMEQLNGTNFEGQTITVNE 76
Query: 62 VRP 64
RP
Sbjct: 77 ARP 79
>gi|302038618|ref|YP_003798940.1| putative RNA-binding protein RbpA [Candidatus Nitrospira
defluvii]
gi|300606682|emb|CBK43015.1| putative RNA-binding protein RbpA [Candidatus Nitrospira
defluvii]
Length = 108
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
++D F+ G V A II DK S+G+G V ++ +EAQKA++ +NG + GR L V+
Sbjct: 19 LSDLFAVHGAVESARIITDKFTGQSRGFGFVEMASSDEAQKAISALNGTDMGGRTLTVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|351722320|ref|NP_001236472.1| uncharacterized protein LOC100306540 [Glycine max]
gi|255628821|gb|ACU14755.1| unknown [Glycine max]
Length = 146
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
++ DAF Q G++ + +I D S+GYG V F +E A A EMNG++LDGR + V
Sbjct: 73 ILRDAFGQHGEIIEVKVICDHVTGKSRGYGFVRFVSETTAAAARKEMNGQILDGRRIRVS 132
Query: 61 NVRPSRR 67
R
Sbjct: 133 YAHKGER 139
>gi|406896127|gb|EKD40506.1| RNP-1 like protein RNA-binding protein, partial [uncultured
bacterium]
Length = 92
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 36/55 (65%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
F +FG+V A+IIMDK SKG+G V ++ EAQ A+ +NGK + GR L V+
Sbjct: 21 FEEFGKVGSASIIMDKYSGQSKGFGFVEMDSQTEAQSAMEALNGKDVKGRTLIVN 75
>gi|449486948|ref|XP_004157450.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Cucumis sativus]
Length = 173
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 38/54 (70%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
+ +AF+++G+V +A +IMD+ S+G+G VTF E+A A+ ++G+ LDGR
Sbjct: 56 LTEAFTKYGEVVEARVIMDRDTGRSRGFGFVTFGASEDASSAIQALDGQDLDGR 109
>gi|449439323|ref|XP_004137435.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Cucumis sativus]
Length = 171
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 38/54 (70%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
+ +AF+++G+V +A +IMD+ S+G+G VTF E+A A+ ++G+ LDGR
Sbjct: 56 LTEAFTKYGEVVEARVIMDRDTGRSRGFGFVTFGASEDASSAIQALDGQDLDGR 109
>gi|395333502|gb|EJF65879.1| polyadenylate binding protein [Dichomitus squalens LYAD-421 SS1]
Length = 664
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F FG +T A ++ D+ K TSKG+G V FS+ +EA KA+ EMN K++ + L+V
Sbjct: 352 FEPFGSITSAKVMRDE-KGTSKGFGFVCFSSPDEATKAVAEMNNKMIGSKPLYV 404
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F QFG VT A I D+ + S+G+G V F T EEAQKA+ ++ GR LFV
Sbjct: 249 FEQFGNVTSAVIQTDE-QGQSRGFGFVNFETHEEAQKAVETLHDSEYHGRKLFV 301
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F+ FG V + D+ SKGYG V + T E A+ A+ +NG LL+ + ++V
Sbjct: 148 LHDTFAAFGNVLSCKVATDE-HGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYV 204
>gi|148227542|ref|NP_001082094.1| embryonic polyadenylate-binding protein A [Xenopus laevis]
gi|94711253|sp|Q98SP8.2|EPABA_XENLA RecName: Full=Embryonic polyadenylate-binding protein A;
Short=Embryonic poly(A)-binding protein A; Short=ePAB-A;
Short=ePABP-A; AltName: Full=XePABP-A
gi|51258324|gb|AAH80020.1| EPAB protein [Xenopus laevis]
Length = 629
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS FG ++MD S+G+G V + EEAQKA++EMNGK ++GR+++V
Sbjct: 207 LREIFSAFGNTLSVKVMMDDS-GRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYV 263
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + ++ D+ + S+GYG V F T E A +A+ MNG LL+ R +FV +
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGH 172
Query: 62 VRPSRR 67
+ SRR
Sbjct: 173 FK-SRR 177
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F +G +T A ++ + G SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FLPYGTITSAKVMTEGGH--SKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
>gi|77166221|ref|YP_344746.1| RNA-binding protein, RNP-1 [Nitrosococcus oceani ATCC 19707]
gi|254435869|ref|ZP_05049376.1| RNA-binding protein [Nitrosococcus oceani AFC27]
gi|76884535|gb|ABA59216.1| RNA-binding protein, RNP-1 [Nitrosococcus oceani ATCC 19707]
gi|207088980|gb|EDZ66252.1| RNA-binding protein [Nitrosococcus oceani AFC27]
Length = 119
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AF +G+V+ A +I+DK N SKG+G V +++E+A+ A+ EM+ + GR + V+ RP
Sbjct: 37 AFENYGEVSSAKVIVDKFSNRSKGFGFVEMASKEDAEAAIKEMHDSDIKGRQVVVNEARP 96
>gi|222623613|gb|EEE57745.1| hypothetical protein OsJ_08262 [Oryza sativa Japonica Group]
Length = 369
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AF FG++ + IIMDK SKGY + ++TEE AL MNG++++G ++ VD +
Sbjct: 284 AFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEEAGGAALKAMNGQIINGWMIVVDVAKH 343
Query: 65 SRR 67
R
Sbjct: 344 RSR 346
>gi|442761059|gb|JAA72688.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Ixodes ricinus]
Length = 235
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 38/62 (61%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
M+ F FG++ K +I D N SKGYG +TF E+A+KAL ++NG L GR + V
Sbjct: 160 MLKGIFEPFGKIDKIELIKDMETNRSKGYGFITFHDSEDAKKALEQLNGFELAGRPMKVG 219
Query: 61 NV 62
+V
Sbjct: 220 HV 221
>gi|42522915|ref|NP_968295.1| RNA-binding protein [Bdellovibrio bacteriovorus HD100]
gi|426403373|ref|YP_007022344.1| RNA-binding protein [Bdellovibrio bacteriovorus str. Tiberius]
gi|39574111|emb|CAE79288.1| putative RNA-binding protein [Bdellovibrio bacteriovorus HD100]
gi|425860041|gb|AFY01077.1| putative RNA-binding protein [Bdellovibrio bacteriovorus str.
Tiberius]
Length = 116
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+AD F++FG V A I++D+ SKG+ V ST++EA A+ ++NG L GR + V
Sbjct: 19 LADTFAEFGNVESARIVIDRETGRSKGFAFVEMSTDDEAATAIAKLNGVELMGRAMNVSE 78
Query: 62 VRP 64
+P
Sbjct: 79 AKP 81
>gi|390342940|ref|XP_001198098.2| PREDICTED: RNA-binding protein 39-like [Strongylocentrotus
purpuratus]
Length = 666
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
M+ F FG++ ++MD N SKGYG +TF E+A++AL ++NG L GR + V+
Sbjct: 320 MLRGIFEPFGKIDNIQLMMDTDANRSKGYGFITFHDAEDAKRALDQLNGFELAGRPMKVN 379
Query: 61 NV 62
+V
Sbjct: 380 HV 381
>gi|13540314|gb|AAK29408.1|AF338225_1 embryonic poly(A) binding protein [Xenopus laevis]
Length = 629
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS FG ++MD S+G+G V + EEAQKA++EMNGK ++GR+++V
Sbjct: 207 LREIFSAFGNTLSVKVMMDDS-GRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYV 263
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + ++ D+ + S+GYG V F T E A +A+ MNG LL+ R +FV +
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGH 172
Query: 62 VRPSRR 67
+ SRR
Sbjct: 173 FK-SRR 177
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F +G +T A ++ + G SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FLPYGTITSAKVMTEGGH--SKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
>gi|119589931|gb|EAW69525.1| cold inducible RNA binding protein, isoform CRA_d [Homo sapiens]
Length = 311
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ FS++GQ+++ ++ D+ S+G+G VTF ++A+ A+ MNGK +DGR + VD
Sbjct: 34 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 93
Query: 62 VRPS 65
S
Sbjct: 94 AGKS 97
>gi|425765484|gb|EKV04163.1| hypothetical protein PDIP_88470 [Penicillium digitatum Pd1]
gi|425778342|gb|EKV16473.1| hypothetical protein PDIG_20660 [Penicillium digitatum PHI26]
Length = 136
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
F +FG V AT++ D+ S+G+G V FST+EEA A+ MN + DGR + VD
Sbjct: 22 FEEFGVVEDATVVKDRDTGRSRGFGFVRFSTDEEATAAMNAMNNQEFDGRQIRVD 76
>gi|78186885|ref|YP_374928.1| RNA recognition motif-containing protein [Chlorobium luteolum DSM
273]
gi|78166787|gb|ABB23885.1| RNA-binding region RNP-1 (RNA recognition motif) [Chlorobium
luteolum DSM 273]
Length = 90
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ DAFS+FG+V A II DK SKG+G V ++ A++A+ M+ K GR + V+
Sbjct: 17 LRDAFSEFGEVASANIITDKFSGRSKGFGFVEMPDDDAAREAIESMHNKDFKGRSIMVNE 76
Query: 62 VRP 64
+P
Sbjct: 77 AKP 79
>gi|302815033|ref|XP_002989199.1| hypothetical protein SELMODRAFT_37572 [Selaginella
moellendorffii]
gi|300143099|gb|EFJ09793.1| hypothetical protein SELMODRAFT_37572 [Selaginella
moellendorffii]
Length = 166
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 40/60 (66%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
+F QFG++ +A +I+D+G S+G+G VTF+ + +A+ ++ K LDGRV+ V+ P
Sbjct: 22 SFRQFGRILEAKVIIDRGSGRSRGFGFVTFADQRAMDEAIDRLHNKELDGRVVTVNKALP 81
>gi|323650232|gb|ADX97202.1| cold-inducible RNA-binding protein [Perca flavescens]
Length = 80
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+A AF +FG + K +I D+ S+G+G V + E+A+ A+ MNGK LDGR + VD
Sbjct: 18 LAAAFGKFGTIEKVDVIKDRDTGYSRGFGFVKYENSEDAKDAMEGMNGKTLDGRAIRVDE 77
Query: 62 V 62
Sbjct: 78 A 78
>gi|302811189|ref|XP_002987284.1| hypothetical protein SELMODRAFT_37571 [Selaginella
moellendorffii]
gi|300144919|gb|EFJ11599.1| hypothetical protein SELMODRAFT_37571 [Selaginella
moellendorffii]
Length = 163
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 40/60 (66%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
+F QFG++ +A +I+D+G S+G+G VTF+ + +A+ ++ K LDGRV+ V+ P
Sbjct: 22 SFRQFGRILEAKVIIDRGSGRSRGFGFVTFADQRAMDEAIDRLHNKELDGRVVTVNKALP 81
>gi|157108428|ref|XP_001650224.1| splicing factor [Aedes aegypti]
gi|108879330|gb|EAT43555.1| AAEL005046-PA [Aedes aegypti]
Length = 544
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
M+ F FG++ +IMD SKGYG +TF ++A+KAL ++NG L GR + V
Sbjct: 302 MLRGIFEPFGKIDNIQLIMDSDTGRSKGYGFITFHNADDAKKALEQLNGFELAGRPMKVG 361
Query: 61 NV 62
NV
Sbjct: 362 NV 363
>gi|351725469|ref|NP_001238373.1| glycine-rich RNA-binding protein [Glycine max]
gi|5726567|gb|AAD48471.1|AF169205_1 glycine-rich RNA-binding protein [Glycine max]
Length = 160
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 39/56 (69%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
AFSQ+G++ + II D+ S+G+G VTF++E+ + A+ MNG+ LDGR + V+
Sbjct: 27 AFSQYGEIVETKIINDRETGRSRGFGFVTFASEQSMKDAIGAMNGQNLDGRNITVN 82
>gi|351723119|ref|NP_001235732.1| uncharacterized protein LOC100526902 [Glycine max]
gi|255631115|gb|ACU15923.1| unknown [Glycine max]
Length = 176
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D F +FG++ +A +++DK S+G+G VTF ++ +A+ MNG LDGR + VD
Sbjct: 23 LKDTFEKFGKLIEAKVVVDKFSGRSRGFGFVTFDDKKAMDEAIDAMNGMDLDGRTITVDR 82
Query: 62 VRP 64
+P
Sbjct: 83 AQP 85
>gi|351725105|ref|NP_001235801.1| uncharacterized protein LOC100305467 [Glycine max]
gi|255625591|gb|ACU13140.1| unknown [Glycine max]
Length = 156
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 39/56 (69%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
AFSQ+G V ++ II D+ S+G+G VTF++E+ + A+ MNG+ LDGR + V+
Sbjct: 27 AFSQYGDVVESKIINDRETGRSRGFGFVTFASEDSMRDAIEGMNGQNLDGRNITVN 82
>gi|242215700|ref|XP_002473663.1| predicted protein [Postia placenta Mad-698-R]
gi|220727201|gb|EED81127.1| predicted protein [Postia placenta Mad-698-R]
Length = 638
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 39/57 (68%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
D FS++G+V K I+ D+ + S+G+G +T ST +EA + + E+NG L+GR + VD
Sbjct: 71 DEFSRYGRVEKVVIVYDQRSDRSRGFGFITMSTTDEAGRCIKELNGVDLNGRRIRVD 127
>gi|118788821|ref|XP_317010.3| AGAP008433-PA [Anopheles gambiae str. PEST]
gi|116122929|gb|EAA12873.4| AGAP008433-PA [Anopheles gambiae str. PEST]
Length = 526
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
M+ F FG++ +IMD SKGYG +TF ++A+KAL ++NG L GR + V
Sbjct: 284 MLNGIFEPFGKIDNIQLIMDADTGRSKGYGFITFHNADDAKKALEQLNGFELAGRPMKVG 343
Query: 61 NV 62
NV
Sbjct: 344 NV 345
>gi|3342756|gb|AAC41383.1| RNA-binding protein AxRNBP [Ambystoma mexicanum]
Length = 144
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
AFS++G V A ++ D+ S+G+G VTF +A++AL MNG+ LDGR + VD
Sbjct: 26 AFSKYGDVCDAVVVKDRETGRSRGFGFVTFRNPSDAKEALHAMNGESLDGRQIRVD 81
>gi|388582290|gb|EIM22595.1| polyadenylate binding protein [Wallemia sebi CBS 633.66]
Length = 637
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F FG +T A I+ D+ K TSKG+G V FS+ +EA KA++E++GK++ + L+V
Sbjct: 342 FEPFGTITSAKIMRDE-KGTSKGFGFVCFSSPDEATKAVSELSGKMIGSKPLYV 394
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F+ FG V + D+ N S+GYG V + E A A+ +NG LL+ + ++V
Sbjct: 142 LHDTFAAFGNVLSCKVATDENGN-SRGYGFVHYENGESASAAIQHVNGMLLNDKKVYV 198
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 9 FGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+G++ A + D+ N S+G+G V + EEA KA+ +N +DG+ +F
Sbjct: 242 YGEILSAVVQKDEQGN-SRGFGFVNYKNHEEAAKAVESLNEVEVDGKKIFA 291
>gi|324507975|gb|ADY43373.1| Nucleolysin TIAR [Ascaris suum]
Length = 290
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVL 57
+ DAF+ FG+V+ A +I D SKGYG V++ EEA++A+ +MNG+ L R +
Sbjct: 47 LKDAFAPFGEVSDAKVIRDSTTLKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTI 102
>gi|440899695|gb|ELR50961.1| Polyadenylate-binding protein 1-like protein, partial [Bos
grunniens mutus]
Length = 618
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FSQFG++ ++ D + S+G+G V F EEAQKA+ MNG+ + GR+L+V
Sbjct: 207 LQDLFSQFGKMLSVKVMRDVSGH-SRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYV 263
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS +G +T A ++ + G SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPYGVITSAKVMTEGGH--SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 365
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + ++ D+ + S+G+G V F T E AQ A++ MNG LL+ R +FV +
Sbjct: 115 LYDTFSTFGNILSCKVVCDE--HGSRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGH 172
Query: 62 VRPSRR 67
+ SRR
Sbjct: 173 FK-SRR 177
>gi|167386187|ref|XP_001737654.1| splicing factor, arginine/serine-rich [Entamoeba dispar SAW760]
gi|165899464|gb|EDR26052.1| splicing factor, arginine/serine-rich, putative [Entamoeba dispar
SAW760]
Length = 199
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AF G++ + + K SKG+G VTF+ EE A+KA+ EMNGK +DG ++ V
Sbjct: 20 LKEAFVSVGEIKNSRVATHK-DGASKGFGFVTFNDEETAEKAVNEMNGKEIDGSIVVVQI 78
Query: 62 VRPSRRYNTD 71
RP R D
Sbjct: 79 SRPQDRKRRD 88
>gi|150024447|ref|YP_001295273.1| RNA-binding protein RbpA [Flavobacterium psychrophilum JIP02/86]
gi|149770988|emb|CAL42455.1| Putative RNA-binding protein RbpA [Flavobacterium psychrophilum
JIP02/86]
Length = 133
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ ++F +G V II DK SKG+G V +EE QKA+ E+NG +DGR + V+
Sbjct: 17 LRESFEAYGAVESVKIITDKFTGRSKGFGFVEMPNDEEGQKAIDELNGATVDGRAIVVNK 76
Query: 62 VRP 64
P
Sbjct: 77 SEP 79
>gi|68070939|ref|XP_677383.1| polyadenylate-binding protein [Plasmodium berghei strain ANKA]
gi|56497479|emb|CAH95361.1| polyadenylate-binding protein, putative [Plasmodium berghei]
Length = 833
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F +G +T A ++ D K+ SKG+G V F T EEA KA+TEM+ K+++G+ L+V
Sbjct: 423 LKELFEPYGTITSAKVMKDD-KDQSKGFGFVCFGTHEEANKAVTEMHLKIINGKPLYV 479
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 4 DAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN- 61
D FS FG + + D+ GK SK YG V + EE A++A+ ++NG L + ++V +
Sbjct: 122 DTFSMFGNILSCKVATDEFGK--SKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYVGHF 179
Query: 62 VRPSRRYNTDVPLARLKI 79
++ S R D L +
Sbjct: 180 IKKSERATNDTKFTNLYV 197
>gi|373854326|ref|ZP_09597124.1| RNP-1 like RNA-binding protein [Opitutaceae bacterium TAV5]
gi|391231688|ref|ZP_10267894.1| RRM domain-containing RNA-binding protein [Opitutaceae bacterium
TAV1]
gi|372472193|gb|EHP32205.1| RNP-1 like RNA-binding protein [Opitutaceae bacterium TAV5]
gi|391221349|gb|EIP99769.1| RRM domain-containing RNA-binding protein [Opitutaceae bacterium
TAV1]
Length = 122
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 35/60 (58%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AF QFG VT + MDK +G+ VT ST EEA+ A ++NG L GR L V+ RP
Sbjct: 23 AFGQFGNVTDVYVAMDKMTGRPRGFAFVTMSTPEEAKIAAEKLNGVDLGGRALTVNEARP 82
>gi|239606561|gb|EEQ83548.1| ribosome biogenesis protein Nop4 [Ajellomyces dermatitidis ER-3]
Length = 744
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + FSQ + AT+++D SK YG VTF+ E+A KAL E NG + DG+ L ++
Sbjct: 65 LTEYFSQSYPLKHATVVLDPQTKQSKSYGFVTFADHEDAAKALEEFNGSVFDGKKLKIEV 124
Query: 62 VRPSRR 67
P R
Sbjct: 125 AEPRHR 130
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+A F FG+V K +I +G S G+G V + A+KAL +NGK +DGR L VD
Sbjct: 175 QLAALFRSFGKV-KHAVIPKRGTQHS-GFGFVVLRGRKNAEKALEAVNGKEIDGRTLAVD 232
>gi|170071297|ref|XP_001869868.1| splicing factor [Culex quinquefasciatus]
gi|167867202|gb|EDS30585.1| splicing factor [Culex quinquefasciatus]
Length = 524
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
M+ F FG++ +IMD SKGYG +TF ++A+KAL ++NG L GR + V
Sbjct: 282 MLRGIFEPFGKIDNIQLIMDSDTGRSKGYGFITFHNADDAKKALEQLNGFELAGRPMKVG 341
Query: 61 NV 62
NV
Sbjct: 342 NV 343
>gi|242823058|ref|XP_002488014.1| glycine-rich RNA-binding protein, putative [Talaromyces
stipitatus ATCC 10500]
gi|218712935|gb|EED12360.1| glycine-rich RNA-binding protein, putative [Talaromyces
stipitatus ATCC 10500]
Length = 134
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
F +FG + +A +I D+ N S+G+G V F+T+ EA A+ MN + DGRV+ VD
Sbjct: 21 GFEKFGTIEEAIVIKDRDTNRSRGFGFVRFATDAEADAAIDGMNNQEFDGRVIRVD 76
>gi|346465875|gb|AEO32782.1| hypothetical protein [Amblyomma maculatum]
Length = 558
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 38/62 (61%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
M+ F FG++ K +I D N SKGYG +TF E+A+KAL ++NG L GR + V
Sbjct: 314 MLKGIFEPFGKIDKIELIKDMETNRSKGYGFITFHDSEDAKKALEQLNGFELAGRPMKVG 373
Query: 61 NV 62
+V
Sbjct: 374 HV 375
>gi|255080002|ref|XP_002503581.1| predicted protein [Micromonas sp. RCC299]
gi|226518848|gb|ACO64839.1| predicted protein [Micromonas sp. RCC299]
Length = 597
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
D FSQFG + A + D G+ SKGYG V F+ +E AQ+A+ ++NG LL+ + ++V
Sbjct: 126 DTFSQFGNIVSAKVAAD-GQGVSKGYGFVQFAEQEAAQQAIDKVNGMLLNDKQVYV 180
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F++FG +T ++ D S+G V FS+ +EA +A+TEMNGK+ + L+V
Sbjct: 321 FAEFGTITSCRVMRD-ASGASRGSAFVAFSSADEATRAVTEMNGKMAGTKPLYV 373
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 9 FGQVTKAT--IIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNG 49
FG V K T +IM G+ SKG+G V F E A +A+ +++G
Sbjct: 217 FGAVGKLTSVVIMKDGEGKSKGFGFVCFEESEAASEAVEKLDG 259
>gi|372269331|ref|ZP_09505379.1| RNA-binding region RNP-1 (RNA recognition motif) [Alteromonas sp.
S89]
Length = 89
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 41/62 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AF FG++++AT+I D+ SKG+G V ++EA+KA+ EMN + L GR + V+
Sbjct: 17 LHEAFGAFGEISRATVITDRETGRSKGFGFVEMPNDDEARKAIEEMNDQPLSGRNIRVNE 76
Query: 62 VR 63
+
Sbjct: 77 AK 78
>gi|6911142|gb|AAF31402.1| putative glycine-rich RNA binding protein 1 [Catharanthus roseus]
Length = 137
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 42/63 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+++AFSQ+G+V ++ II D+ S+G+G VTF E+ + A+ MNG+ LDGR + V+
Sbjct: 24 LSEAFSQYGEVLESKIINDRETGRSRGFGFVTFGDEKSMKDAIEGMNGQTLDGRNVTVNE 83
Query: 62 VRP 64
+
Sbjct: 84 AQS 86
>gi|170058744|ref|XP_001865056.1| splicing factor [Culex quinquefasciatus]
gi|167877732|gb|EDS41115.1| splicing factor [Culex quinquefasciatus]
Length = 546
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
M+ F FG++ +IMD SKGYG +TF ++A+KAL ++NG L GR + V
Sbjct: 304 MLRGIFEPFGKIDNIQLIMDSDTGRSKGYGFITFHNADDAKKALEQLNGFELAGRPMKVG 363
Query: 61 NV 62
NV
Sbjct: 364 NV 365
>gi|544426|sp|Q03878.1|GRP1_DAUCA RecName: Full=Glycine-rich RNA-binding protein
gi|18347|emb|CAA41152.1| glycine-rich protein [Daucus carota]
gi|445138|prf||1908438A Gly-rich protein
Length = 157
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ AFSQFG +T + II D+ S+G+G VTF E+ + A+ MNG+ LDGR + V+
Sbjct: 22 LEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNE 81
Query: 62 VRP 64
+
Sbjct: 82 AQS 84
>gi|410340767|gb|JAA39330.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
gi|410340769|gb|JAA39331.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
gi|410340771|gb|JAA39332.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
gi|410340773|gb|JAA39333.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
gi|410340775|gb|JAA39334.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
gi|410340777|gb|JAA39335.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
Length = 157
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG +++ ++ D+ S+G+G +TF E A A+ MNG+ LDGR + VD+
Sbjct: 22 LEDHFSSFGPISEVVVVKDRETQRSRGFGFITFPIPEHASVAMRAMNGESLDGRQIRVDH 81
Query: 62 VRPSRR 67
S R
Sbjct: 82 AGKSAR 87
>gi|312374824|gb|EFR22303.1| hypothetical protein AND_15459 [Anopheles darlingi]
Length = 560
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
M+ F FG++ +IMD SKGYG +TF ++A+KAL ++NG L GR + V
Sbjct: 318 MLRGIFEPFGKIDNIQLIMDTDTGRSKGYGFITFHNADDAKKALEQLNGFELAGRPMKVG 377
Query: 61 NV 62
NV
Sbjct: 378 NV 379
>gi|224085260|ref|XP_002307526.1| predicted protein [Populus trichocarpa]
gi|222856975|gb|EEE94522.1| predicted protein [Populus trichocarpa]
Length = 649
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS+FG +T +++D+ + SKG G V FST EEA +AL MNGK++ + L+V
Sbjct: 331 LKELFSEFGSITSCKVMLDQ-QGLSKGSGFVAFSTPEEASRALNGMNGKMIGKKPLYV 387
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F+ FG V + +D SKGYG V F EE AQ A+ +NG L++ + +FV
Sbjct: 137 LQETFASFGSVLSCKVAVDN-NGQSKGYGFVQFENEEAAQSAINRLNGMLINDKEVFV 193
Score = 39.3 bits (90), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS +G +T A ++ D+ SKG+G V F + + A A+ ++NG + +V +V
Sbjct: 232 FSNYGAITSAIVMKDQ-SGKSKGFGFVNFQSPDSAAAAVEKLNGTTFNDKVWYV 284
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRV--LFVDN 61
D FSQ QV + D+ + S GY V FS ++A A+ +N L+G+ + V +
Sbjct: 51 DLFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDASNAMELLNFTPLNGKAIRIMVSH 110
Query: 62 VRPSRR 67
PS R
Sbjct: 111 RDPSMR 116
>gi|224130158|ref|XP_002328668.1| predicted protein [Populus trichocarpa]
gi|222838844|gb|EEE77195.1| predicted protein [Populus trichocarpa]
Length = 142
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AF ++G V + IIMD+ S+G+G VT+++ EEA A+ M+G+ L GR + V+
Sbjct: 56 LKEAFDKYGNVVEGIIIMDRDTGRSRGFGFVTYTSSEEASSAIQAMDGQDLHGRRVRVNY 115
Query: 62 V--RPSRRY 68
RP R +
Sbjct: 116 ATERPQRTF 124
>gi|6911146|gb|AAF31404.1|AF200323_1 putative glycine-rich RNA-binding protein 2 [Catharanthus roseus]
Length = 160
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 42/63 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+++AFSQ+G+V ++ +I D+ S+G+G VTF E+ + A+ MNG+ LDGR + V+
Sbjct: 24 LSEAFSQYGEVLESKVINDRETGRSRGFGFVTFGDEKSMKDAIVGMNGQTLDGRNITVNE 83
Query: 62 VRP 64
+
Sbjct: 84 AQS 86
>gi|334185950|ref|NP_001190079.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
gi|332645571|gb|AEE79092.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
Length = 363
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD- 60
+ + F++ G+V +A +I D+ SKG+G VT S+ +E QKA+ +NG LDGR + V
Sbjct: 294 LENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSE 353
Query: 61 -NVRPSR 66
RP R
Sbjct: 354 AEARPPR 360
>gi|357462205|ref|XP_003601384.1| Glycine-rich RNA-binding protein [Medicago truncatula]
gi|355490432|gb|AES71635.1| Glycine-rich RNA-binding protein [Medicago truncatula]
Length = 135
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVL 57
+ DAFS FG VT+ I+ DK ++G+G V FS E+ A+ A M+GK L GR L
Sbjct: 52 LKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDAMDGKALLGRPL 107
>gi|242055377|ref|XP_002456834.1| hypothetical protein SORBIDRAFT_03g043760 [Sorghum bicolor]
gi|241928809|gb|EES01954.1| hypothetical protein SORBIDRAFT_03g043760 [Sorghum bicolor]
Length = 147
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD--N 61
+AFS FG VT+A +I D+ S+G+G V +++ + A A++ M+GK +DGR + V+ N
Sbjct: 55 EAFSGFGDVTEARVITDRDTGKSRGFGFVNYTSSDAANAAISGMDGKEIDGRPVRVNIAN 114
Query: 62 VRPS 65
RP+
Sbjct: 115 DRPA 118
>gi|224085256|ref|XP_002307525.1| predicted protein [Populus trichocarpa]
gi|222856974|gb|EEE94521.1| predicted protein [Populus trichocarpa]
Length = 614
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS+FG +T +++D+ + SKG G V FST EEA +AL MNGK++ + L+V
Sbjct: 321 LKELFSEFGSITSCKVMLDQ-QGLSKGSGFVAFSTPEEASRALNGMNGKMIGKKPLYV 377
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F+ FG V + +D SKGYG V F EE AQ A+ +NG L++ + +FV
Sbjct: 127 LQETFASFGPVLSCKVAVDN-NGQSKGYGFVQFENEEAAQSAINRLNGMLINDKEVFV 183
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS +G +T A ++ D+ SKG+G V F + + A A+ ++NG + +V +V
Sbjct: 222 FSNYGSITSAIVMKDQ-SGKSKGFGFVNFQSPDSAAAAVEKLNGTTFNDKVWYV 274
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRV--LFVDN 61
D FSQ QV + D+ + S GY V FS ++A A+ +N L+G+ + V +
Sbjct: 41 DLFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDAANAMELLNFTPLNGKAIRIMVSH 100
Query: 62 VRPSRR 67
PS R
Sbjct: 101 RDPSMR 106
>gi|427794973|gb|JAA62938.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Rhipicephalus pulchellus]
Length = 509
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 38/62 (61%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
M+ F FG++ K +I D N SKGYG +TF E+A+KAL ++NG L GR + V
Sbjct: 267 MLKGIFEPFGKIDKIELIKDMETNRSKGYGFITFHDSEDAKKALEQLNGFELAGRPMKVG 326
Query: 61 NV 62
+V
Sbjct: 327 HV 328
>gi|2293480|gb|AAB65412.1| glycine-rich protein [Oryza sativa Indica Group]
Length = 161
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 40/59 (67%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
AFS +G++ ++ II D+ S+G+G VTFS+E+ + A+ MNGK LDGR + V+ +
Sbjct: 27 AFSTYGEILESKIINDRETGRSRGFGFVTFSSEQAMRDAIEGMNGKELDGRNITVNEAQ 85
>gi|392592864|gb|EIW82190.1| RNA-binding domain-containing protein, partial [Coniophora puteana
RWD-64-598 SS2]
Length = 306
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 38/57 (66%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
D FS+FG+V K TI+ D+ + S+G+G + S EEA + + E+NG L+GR + VD
Sbjct: 102 DEFSRFGRVEKVTIVYDQRSDRSRGFGFIKMSAVEEATRCIQELNGVELNGRRIRVD 158
>gi|148235865|ref|NP_001079794.1| cold-inducible RNA-binding protein B [Xenopus laevis]
gi|82247034|sp|Q9DED4.1|CIRBB_XENLA RecName: Full=Cold-inducible RNA-binding protein B; AltName:
Full=Cold-inducible RNA-binding protein 2;
Short=xCIRP2; AltName: Full=Glycine-rich RNA-binding
protein CIRP-B
gi|11761319|dbj|BAB19129.1| cold-inducible RNA binding protein 2 [Xenopus laevis]
gi|32450232|gb|AAH54250.1| Xcirp2 protein [Xenopus laevis]
Length = 166
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 39/60 (65%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
FS++GQ+++ ++ D+ S+G+G VTF ++A+ A+ MNGK +DGR + VD S
Sbjct: 25 FSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAVDGRQIRVDQAGKS 84
>gi|351706751|gb|EHB09670.1| Polyadenylate-binding protein 4-like protein [Heterocephalus
glaber]
Length = 370
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T+ ++ ++G S+G+G + FS+ EEA KALTEMNG++L + L +
Sbjct: 313 FSSFGSITRVKVMKEEG--YSRGFGLICFSSPEEAAKALTEMNGRVLGSKALSI 364
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS++G+ ++ D SKG+G V+F + E A++A+ EMNGK ++G+++FV
Sbjct: 210 FSRYGKTLSVKVMTDSS-GKSKGFGFVSFESHEAAKRAVEEMNGKDMNGQLVFV 262
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + FS FG++ + ++ D SKGY V F ++ A A+ +MNGK+++ R +FV
Sbjct: 114 LYEHFSGFGKILSSKVMSDD--QGSKGYAFVHFQSQSAANCAIEQMNGKVINDRPVFVAP 171
Query: 62 VRPSR 66
+P +
Sbjct: 172 FKPRK 176
>gi|256839767|ref|ZP_05545276.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|256738697|gb|EEU52022.1| conserved hypothetical protein [Parabacteroides sp. D13]
Length = 123
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 38/59 (64%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
F+ +G++T A +IMD+ S+G+G V S +E A+KA+ E+N DG+V+ + RP
Sbjct: 21 FADYGEITSAKVIMDRETGRSRGFGFVELSDDELAKKAIEELNQASYDGKVINITEARP 79
>gi|194224457|ref|XP_001500563.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Equus
caballus]
Length = 612
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FSQFG++ ++ D + S+G+G V F EEAQKA+ +MNG + GR+L+V
Sbjct: 207 LQDLFSQFGKMLSVKVMRDDSGH-SRGFGFVNFEKHEEAQKAVMDMNGMQVSGRLLYV 263
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS +G +T A ++ + G SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPYGVITSAKVMTEGGH--SKGFGFVCFSSPEEATKAVTEMNGRIIGTKPLYV 365
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + ++ D + S+G+G V F T E AQ+A++ MNG LL+ R +FV +
Sbjct: 115 LYDTFSTFGNILSCKVVCDD--HGSRGFGFVHFETHEAAQQAISTMNGMLLNDRKVFVGH 172
Query: 62 VRPSRR 67
+ SRR
Sbjct: 173 FK-SRR 177
>gi|442771473|gb|AGC72159.1| RNA-binding protein [uncultured bacterium A1Q1_fos_560]
Length = 98
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
++D F+ G VT A II DK S+G+G V S + EAQ A+ +NG GR L V+
Sbjct: 19 LSDLFAVHGAVTSARIITDKFTGQSRGFGFVEMSGDSEAQAAINALNGTQFGGRTLTVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|409081762|gb|EKM82121.1| hypothetical protein AGABI1DRAFT_112242 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426198598|gb|EKV48524.1| hypothetical protein AGABI2DRAFT_192114 [Agaricus bisporus var.
bisporus H97]
Length = 275
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 39/57 (68%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
D FS+FG+V K TI+ D+ + S+G+G + ST +EA + + E+NG L+GR + VD
Sbjct: 100 DEFSRFGRVEKVTIVYDQRSDRSRGFGFIKMSTVDEAARCIQELNGVELNGRRIRVD 156
>gi|398810917|ref|ZP_10569726.1| RRM domain-containing RNA-binding protein [Variovorax sp. CF313]
gi|398081873|gb|EJL72641.1| RRM domain-containing RNA-binding protein [Variovorax sp. CF313]
Length = 134
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ AF +FG + A ++M++ SKG+G V ++ EA A+ MNG L GR L V+
Sbjct: 19 LEQAFGEFGAIVSAKVMMERDTGRSKGFGFVEMGSDAEALAAIEAMNGHSLQGRALTVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|319791037|ref|YP_004152677.1| rnp-1 like RNA-binding protein [Variovorax paradoxus EPS]
gi|315593500|gb|ADU34566.1| RNP-1 like RNA-binding protein [Variovorax paradoxus EPS]
Length = 138
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ AF +FG + A ++M++ SKG+G V ++ EA A+ MNG L GR L V+
Sbjct: 19 LEQAFGEFGAIVSAKVMMERDTGRSKGFGFVEMGSDAEALAAIEAMNGHSLQGRALTVNE 78
Query: 62 VRP 64
RP
Sbjct: 79 ARP 81
>gi|115441831|ref|NP_001045195.1| Os01g0916600 [Oryza sativa Japonica Group]
gi|2624328|emb|CAA05729.1| OsGRP2 [Oryza sativa Japonica Group]
gi|19386753|dbj|BAB86134.1| OsGRP2 [Oryza sativa Japonica Group]
gi|20805007|dbj|BAB92683.1| OsGRP2 [Oryza sativa Japonica Group]
gi|113534726|dbj|BAF07109.1| Os01g0916600 [Oryza sativa Japonica Group]
gi|125528847|gb|EAY76961.1| hypothetical protein OsI_04919 [Oryza sativa Indica Group]
gi|125573102|gb|EAZ14617.1| hypothetical protein OsJ_04542 [Oryza sativa Japonica Group]
gi|215765299|dbj|BAG86996.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768370|dbj|BAH00599.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 150
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD- 60
+ +AF+ FG VT+A +I D+ S+G+G V+F+ ++A+ A+ M+GK L+GR + V+
Sbjct: 53 LKEAFTSFGDVTEARVINDRESGRSRGFGFVSFANGDDAKSAMDAMDGKELEGRSIRVNF 112
Query: 61 -NVRP 64
N RP
Sbjct: 113 ANERP 117
>gi|432114066|gb|ELK36113.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 230
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D F +FG ++MD+G TSKG+G V+F E+ QKA+ E+NGK L+ + +++
Sbjct: 6 LKDLFGKFGPALSVKVMMDEG-GTSKGFGFVSFKRHEDTQKAVDEVNGKELNRKQIYISR 64
Query: 62 VRPSRRYNTDV 72
+ + T++
Sbjct: 65 AHKTAEWQTEL 75
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A +M+ G S+G+G V FS+ EEA KA+TEMNG+++ + L V
Sbjct: 113 FSPFGTITGAKFMMEGG--PSEGFGFVRFSSPEEATKAVTEMNGRIVATKPLCV 164
>gi|427792527|gb|JAA61715.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Rhipicephalus pulchellus]
Length = 497
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 38/62 (61%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
M+ F FG++ K +I D N SKGYG +TF E+A+KAL ++NG L GR + V
Sbjct: 255 MLKGIFEPFGKIDKIELIKDMETNRSKGYGFITFHDSEDAKKALEQLNGFELAGRPMKVG 314
Query: 61 NV 62
+V
Sbjct: 315 HV 316
>gi|70947056|ref|XP_743180.1| polyadenylate-binding protein [Plasmodium chabaudi chabaudi]
gi|56522555|emb|CAH74716.1| polyadenylate-binding protein, putative [Plasmodium chabaudi
chabaudi]
Length = 629
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F +G +T A ++ D K+ SKG+G V F T EEA KA+TEM+ K+++G+ L+V
Sbjct: 416 LKELFEPYGTITSAKVMKDD-KDQSKGFGFVCFGTHEEANKAVTEMHLKIINGKPLYV 472
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 4 DAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN- 61
D FS FG + + D+ GK SK YG V + EE A++A+ ++NG L + ++V +
Sbjct: 122 DTFSMFGNILSCKVATDEFGK--SKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYVGHF 179
Query: 62 VRPSRRYNTDVPLARLKI 79
++ S R D L +
Sbjct: 180 IKKSERATNDTKFTNLYV 197
>gi|395854422|ref|XP_003799690.1| PREDICTED: putative RNA-binding protein 3 [Otolemur garnettii]
Length = 155
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG +++ ++ D+ S+G+G +TF+ E A A+ MNG+ LDGR + VD
Sbjct: 22 LEDHFSTFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDR 81
Query: 62 VRPSRR 67
S R
Sbjct: 82 AGKSAR 87
>gi|359807285|ref|NP_001240860.1| uncharacterized protein LOC100815224 [Glycine max]
gi|255645181|gb|ACU23088.1| unknown [Glycine max]
Length = 208
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D F +FG++ +A +++DK S+G+G VTF ++ +A+ MNG LDGR + VD
Sbjct: 23 LKDTFEKFGKLIEAKVVVDKFSGRSRGFGFVTFDDKKAMDEAIDAMNGIDLDGRTITVDR 82
Query: 62 VRP 64
+P
Sbjct: 83 AQP 85
>gi|414587608|tpg|DAA38179.1| TPA: hypothetical protein ZEAMMB73_126317 [Zea mays]
Length = 750
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 34/54 (62%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FSQFG++ A +I D+ SKGYG V +S +A A+ MNG L+GRV+ V
Sbjct: 447 FSQFGEIVMAKVIKDRNTGQSKGYGFVKYSDVSQANAAIAAMNGHHLEGRVIAV 500
>gi|413938711|gb|AFW73262.1| chloroplast protein synthesis 4 [Zea mays]
Length = 400
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AF FG++ + IIMD+ SKGY V ++TEE AL MNG++++G ++ VD +
Sbjct: 320 AFEPFGELVEVKIIMDRISKRSKGYAFVEYTTEEAGGAALKAMNGQIINGWMIVVDVAKT 379
Query: 65 SRR 67
R
Sbjct: 380 RSR 382
>gi|298244419|ref|ZP_06968225.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM
44963]
gi|297551900|gb|EFH85765.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM
44963]
Length = 106
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
F Q GQVT AT+I D+ SKG+G V S+++EA+ A+ ++NG L R + V+ R
Sbjct: 21 FEQIGQVTFATVITDRETGRSKGFGFVEMSSDDEARAAIEQLNGSTLGDRTITVNEARER 80
Query: 66 R 66
R
Sbjct: 81 R 81
>gi|150007582|ref|YP_001302325.1| RNA-binding protein rbpA [Parabacteroides distasonis ATCC 8503]
gi|255013892|ref|ZP_05286018.1| putative RNA-binding protein rbpA [Bacteroides sp. 2_1_7]
gi|298375526|ref|ZP_06985483.1| glycine-rich RNA-binding protein 8 (Protein CCR1) [Bacteroides
sp. 3_1_19]
gi|410101874|ref|ZP_11296802.1| hypothetical protein HMPREF0999_00574 [Parabacteroides sp. D25]
gi|423331931|ref|ZP_17309715.1| hypothetical protein HMPREF1075_01728 [Parabacteroides distasonis
CL03T12C09]
gi|149936006|gb|ABR42703.1| putative RNA-binding protein rbpA [Parabacteroides distasonis
ATCC 8503]
gi|298268026|gb|EFI09682.1| glycine-rich RNA-binding protein 8 (Protein CCR1) [Bacteroides
sp. 3_1_19]
gi|409229772|gb|EKN22644.1| hypothetical protein HMPREF1075_01728 [Parabacteroides distasonis
CL03T12C09]
gi|409239672|gb|EKN32456.1| hypothetical protein HMPREF0999_00574 [Parabacteroides sp. D25]
Length = 123
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 38/59 (64%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
F+ +G++T A +IMD+ S+G+G V S +E A+KA+ E+N DG+V+ + RP
Sbjct: 21 FADYGEITSAKVIMDRETGRSRGFGFVELSDDELAKKAIEELNQASYDGKVINITEARP 79
>gi|1934994|emb|CAA73034.1| SGRP-1 [Solanum commersonii]
Length = 162
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 41/63 (65%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
++DAFS +G+V + II D+ S+G+G VTF E+ ++A++ MNG LDGR + V+
Sbjct: 23 LSDAFSTYGEVVDSKIINDRETGRSRGFGFVTFKDEKSMKEAISGMNGSELDGRNITVNE 82
Query: 62 VRP 64
+
Sbjct: 83 AQA 85
>gi|259490527|ref|NP_001159310.1| uncharacterized protein LOC100304402 [Zea mays]
gi|223943329|gb|ACN25748.1| unknown [Zea mays]
gi|413938710|gb|AFW73261.1| chloroplast protein synthesis 4 [Zea mays]
Length = 398
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AF FG++ + IIMD+ SKGY V ++TEE AL MNG++++G ++ VD +
Sbjct: 318 AFEPFGELVEVKIIMDRISKRSKGYAFVEYTTEEAGGAALKAMNGQIINGWMIVVDVAKT 377
Query: 65 SRR 67
R
Sbjct: 378 RSR 380
>gi|298246745|ref|ZP_06970550.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM
44963]
gi|297549404|gb|EFH83270.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM
44963]
Length = 109
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
F Q GQVT AT+I D+ SKG+G V S+++EA+ A+ ++NG L R + V+ R
Sbjct: 21 FEQIGQVTFATVITDRETGRSKGFGFVEMSSDDEARVAIEQLNGSTLGNRTITVNEARER 80
Query: 66 R 66
R
Sbjct: 81 R 81
>gi|355709046|gb|AES03463.1| poly binding protein, cytoplasmic 1 [Mustela putorius furo]
Length = 102
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 36/47 (76%), Gaps = 2/47 (4%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLL 52
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++
Sbjct: 54 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIV 98
>gi|301310455|ref|ZP_07216394.1| glycine-rich RNA-binding protein 8 (Protein CCR1) [Bacteroides
sp. 20_3]
gi|423336704|ref|ZP_17314451.1| hypothetical protein HMPREF1059_00403 [Parabacteroides distasonis
CL09T03C24]
gi|300832029|gb|EFK62660.1| glycine-rich RNA-binding protein 8 (Protein CCR1) [Bacteroides
sp. 20_3]
gi|409240584|gb|EKN33362.1| hypothetical protein HMPREF1059_00403 [Parabacteroides distasonis
CL09T03C24]
Length = 123
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 38/59 (64%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
F+ +G++T A +IMD+ S+G+G V S +E A+KA+ E+N DG+V+ + RP
Sbjct: 21 FADYGEITSAKVIMDRETGRSRGFGFVELSDDELAKKAIEELNQASYDGKVINITEARP 79
>gi|421976742|gb|AFX73254.1| glycine rich RNA binding protein 1a [Solanum lycopersicum]
Length = 164
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 41/63 (65%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
++DAFS +G+V + II D+ S+G+G VTF E+ + A++ MNG+ LDGR + V+
Sbjct: 23 LSDAFSTYGEVVDSKIINDRETGRSRGFGFVTFKDEKSMKDAISGMNGQELDGRNITVNE 82
Query: 62 VRP 64
+
Sbjct: 83 AQA 85
>gi|312086091|ref|XP_003144941.1| hypothetical protein LOAG_09365 [Loa loa]
Length = 394
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVL 57
+ DAF+ FG+V+ A +I D SKGYG V++ EEA++A+ +MNG+ L R +
Sbjct: 151 LKDAFAPFGEVSDAKVIRDATTLKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTI 206
>gi|297707183|ref|XP_002830392.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Pongo
abelii]
Length = 614
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS +G +T A ++ + G SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPYGVITSAKVMTEGGH--SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 365
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FSQFG++ ++ D + S+ +G V F EEAQKA+ MNGK + GR+L+
Sbjct: 207 LQDLFSQFGKMLSVKVMRDNSGH-SRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 263
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + + D+ + S+G+G V F T E AQ+A+ MNG LL+ R +FV +
Sbjct: 115 LYDTFSTFGNILSCKVACDE--HGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGH 172
Query: 62 VRPSRR 67
+ SRR
Sbjct: 173 FK-SRR 177
>gi|388508864|gb|AFK42498.1| unknown [Medicago truncatula]
Length = 300
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+A F Q G V A +I ++ + S+G+G VT ST EE ++A+ + +G LDGR+L V+N
Sbjct: 138 LAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAVNKFSGFELDGRLLTVNN 197
Query: 62 VRP 64
P
Sbjct: 198 AAP 200
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD--NVR 63
FS+ G+V A ++ D+ +G+G VT S E E A+ ++G+ +GR + V+ R
Sbjct: 236 FSEHGKVESAQVVYDRETGRLRGFGFVTMSNEAEMNDAIAALDGQSFNGRAIRVNVAEER 295
Query: 64 PSRRY 68
P R +
Sbjct: 296 PRRSF 300
>gi|221048043|gb|ACL98129.1| hyperosmotic glycine rich protein [Epinephelus coioides]
Length = 175
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+A AF ++G + K +I DK S+G+G V + ++A+ AL MNGK LDGR + VD
Sbjct: 21 LAAAFGKYGTIEKVDVIRDKETGRSRGFGFVKYDNCDDAKDALEGMNGKTLDGRAIRVDE 80
Query: 62 VRPSRRYN 69
R N
Sbjct: 81 AGKGGRSN 88
>gi|164659141|ref|XP_001730695.1| hypothetical protein MGL_2149 [Malassezia globosa CBS 7966]
gi|159104592|gb|EDP43481.1| hypothetical protein MGL_2149 [Malassezia globosa CBS 7966]
Length = 190
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD- 60
+A AFS +GQ+T ++ D+ S+G+G VTF T++EA A+ +N + LDGR + V+
Sbjct: 18 LAQAFSPYGQLTDYIVMKDRDSGRSRGFGFVTFMTQQEADAAIMALNEQELDGRRIRVNM 77
Query: 61 -NVRP 64
N RP
Sbjct: 78 ANSRP 82
>gi|348570452|ref|XP_003471011.1| PREDICTED: polyadenylate-binding protein 5-like [Cavia porcellus]
Length = 382
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + FS FG +++A ++M+ G+ KG+G + FS+ EEA KA+ EMNG+L+ + L V
Sbjct: 318 LKEEFSAFGSISRAKVMMEVGQ--GKGFGVICFSSFEEATKAVEEMNGRLVGSKPLHVTL 375
Query: 62 VRPSRRY 68
+ RR+
Sbjct: 376 GQVRRRW 382
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS++GQ ++ D SKG+G V + T + AQKA+ +++GK +DG+VL+V
Sbjct: 219 FSEYGQTESVKLVRD-ASGKSKGFGFVRYETHDAAQKAVLDLHGKSVDGKVLYV 271
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG + ++ D N SKGY V F + A +A+ MNG L+ R ++V
Sbjct: 126 FSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHMNGVQLNNRQVYV 177
>gi|119596297|gb|EAW75891.1| hCG2019100, isoform CRA_e [Homo sapiens]
Length = 617
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS +G +T A ++ + G SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPYGVITSAKVMTEGGH--SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 365
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FSQFG++ ++ D + S+ +G V F EEAQKA+ MNGK + GR+L+
Sbjct: 207 LQDLFSQFGKMLSVKVMRDNSGH-SRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 263
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + + D+ + S+G+G V F T E AQ+A+ MNG LL+ R +FV +
Sbjct: 115 LYDTFSTFGNILSCKVACDE--HGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGH 172
Query: 62 VRPSRR 67
+ SRR
Sbjct: 173 FK-SRR 177
>gi|114682135|ref|XP_514668.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 2
[Pan troglodytes]
gi|397511247|ref|XP_003825989.1| PREDICTED: polyadenylate-binding protein 1-like [Pan paniscus]
Length = 614
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS +G +T A ++ + G SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPYGVITSAKVMTEGGH--SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 365
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + + D+ + S+G+G V F T E AQ+A+ MNG LL+ R +FV +
Sbjct: 115 LYDTFSTFGNILSCKVACDE--HGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGH 172
Query: 62 VRPSRR 67
+ SRR
Sbjct: 173 FK-SRR 177
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG++ ++ D + S+ +G V F EEAQKA+ MNGK + GR+L+
Sbjct: 207 LQELFSQFGKMLSVKVMRDNSGH-SRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 263
>gi|449486950|ref|XP_004157451.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Cucumis sativus]
Length = 163
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 35/51 (68%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
AFS++G+V +A ++MD KG+G VTFS +EEA A+ ++GK L GR
Sbjct: 89 AFSKYGEVVEARVVMDPDTGRCKGFGFVTFSAKEEASSAIKALDGKDLGGR 139
>gi|402587661|gb|EJW81596.1| nucleolysin TIAR [Wuchereria bancrofti]
Length = 440
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVL 57
+ DAF+ FG+V+ A +I D SKGYG V++ EEA++A+ +MNG+ L R +
Sbjct: 197 LKDAFAPFGEVSDAKVIRDATTLKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTI 252
>gi|185135971|ref|NP_001118228.1| polyadenylate-binding protein 1-like [Homo sapiens]
gi|74754038|sp|Q4VXU2.1|PAP1L_HUMAN RecName: Full=Polyadenylate-binding protein 1-like
gi|119596298|gb|EAW75892.1| hCG2019100, isoform CRA_f [Homo sapiens]
Length = 614
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS +G +T A ++ + G SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPYGVITSAKVMTEGGH--SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 365
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FSQFG++ ++ D + S+ +G V F EEAQKA+ MNGK + GR+L+
Sbjct: 207 LQDLFSQFGKMLSVKVMRDNSGH-SRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 263
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + + D+ + S+G+G V F T E AQ+A+ MNG LL+ R +FV +
Sbjct: 115 LYDTFSTFGNILSCKVACDE--HGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGH 172
Query: 62 VRPSRR 67
+ SRR
Sbjct: 173 FK-SRR 177
>gi|426391820|ref|XP_004062264.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Gorilla
gorilla gorilla]
Length = 614
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS +G +T A ++ + G SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPYGVITSAKVMTEGGH--SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 365
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FSQFG++ ++ D + S+ +G V F EEAQKA+ MNGK + GR+L+
Sbjct: 207 LQDLFSQFGKMLSVKVMRDNSGH-SRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 263
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + + D+ + S+G+G V F T E AQ+A+ MNG LL+ R +FV +
Sbjct: 115 LYDTFSTFGNILSCKVACDE--HGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGH 172
Query: 62 VRPSRR 67
+ SRR
Sbjct: 173 FK-SRR 177
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.132 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,136,942,822
Number of Sequences: 23463169
Number of extensions: 36638575
Number of successful extensions: 145164
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 13968
Number of HSP's successfully gapped in prelim test: 3024
Number of HSP's that attempted gapping in prelim test: 119612
Number of HSP's gapped (non-prelim): 27868
length of query: 80
length of database: 8,064,228,071
effective HSP length: 51
effective length of query: 29
effective length of database: 6,867,606,452
effective search space: 199160587108
effective search space used: 199160587108
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 69 (31.2 bits)