BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035722
(80 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 41/55 (74%), Gaps = 2/55 (3%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
AFS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 313 AFSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D S FG + ++ D+ N SKGYG V F T E A++A+ +MNG LL+GR +FV
Sbjct: 115 LYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFV 170
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>sp|Q9LIS2|RBG4_ARATH Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis
thaliana GN=RBG4 PE=2 SV=1
Length = 136
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 42/59 (71%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60
+ AF+ FG+VT+AT+I D+ S+G+G V+FS E+ A A+ EM+GK L+GR + V+
Sbjct: 51 LKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVN 109
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>sp|Q99069|GRP1_SORBI Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor
GN=GRP1 PE=2 SV=1
Length = 142
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ AFS +G+V ++ II+D+ S+G+G VTFSTEE + A+ MNGK LDGR + V+
Sbjct: 3 LHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNE 62
Query: 62 VRP 64
+
Sbjct: 63 AQS 65
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F +FG ++ D+ SKG+G V+F E+AQKA+ EMNGK L+G+ ++V
Sbjct: 207 LKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A ++++ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPFGSITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGY V F T+E A KA+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG+ ++ D SKG+G V++ E+A KA+ EMNGK + G+++FV
Sbjct: 207 LKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F+ FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FTPFGSITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV 170
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 2 IADAFSQFGQVTKATIIMD-KGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F Q+G ++ D GK S+G+G V+F E+AQKA+ +MNGK L+G+ +FV
Sbjct: 207 LKEWFGQYGAALSVKVMTDDHGK--SRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFV 263
>sp|Q03251|RBG8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana
GN=RBG8 PE=1 SV=1
Length = 169
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
FSQFG V + II D+ S+G+G VTF E+ + A+ EMNGK LDGRV+ V+ +
Sbjct: 26 FSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQ 83
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 40/58 (68%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FSQFG +T A ++ D TSKG+G V ++ +EA +A+TEMNG+++ + L+V
Sbjct: 300 LREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYV 357
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + ++ D G N+SKG+G V + T+E A KA+ ++NG +++G+ +FV
Sbjct: 114 LYDTFSAFGNILSCKVVTDDG-NSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGP 172
Query: 62 VRPSR 66
+ S+
Sbjct: 173 FKSSK 177
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 2 IADAFSQFGQVTKATIIMD-KGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + Q+G++T TI+ D KGK SKG+G F + E A+ + NGK+ G+ ++
Sbjct: 204 LKELLQQYGEITNITIMADDKGK--SKGFGFANFESAEAAKNVVENENGKIFHGKPIYA 260
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG +T A I+ D+ + SKG+G V ++T EEA KA+TEMN ++L G+ L+V
Sbjct: 384 FSAFGTITSAKIMTDE-QGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYV 436
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+D F QFG++T +++ D+ + +G+G V ++ E AQKA+ E+N K G+ L+V
Sbjct: 277 FSDLFGQFGEITSLSLVKDQ-NDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYV 333
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG++ + +D+ N +KGYG V F + E A A+ +NG LL+ + ++V
Sbjct: 184 LHDTFSAFGKILSCKVAVDELGN-AKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYV 240
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
M+ + F+ G V + D S GY V F E+ +KAL E+N L+ GR
Sbjct: 95 MLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGR 149
>sp|Q9SVM8|RBG2_ARATH Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis
thaliana GN=RBG2 PE=1 SV=1
Length = 158
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD--N 61
DAF+ FG V A +I+D+ S+G+G V F+ E A A++EM+GK L+GR + V+ N
Sbjct: 53 DAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112
Query: 62 VRPS 65
RPS
Sbjct: 113 DRPS 116
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10
PE=2 SV=1
Length = 169
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 38/59 (64%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
FSQFG+V + II D+ S+G+G VTF E+ + A+ EMNGK LDGR + V+ +
Sbjct: 26 FSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQS 84
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F FG +T A +++D+ SKG+G V F+T EEA KA+TEMN ++++G+ L+V
Sbjct: 352 LEEEFKPFGTITSAKVMVDEA-GKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYV 408
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 6 FSQFGQVTKATIIMDKGKN-TSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
FS FG++T +I ++K ++ SKG+G V F E A KA+ E+N K ++G+ ++V +
Sbjct: 253 FSPFGKIT--SIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQK 310
Query: 65 SR 66
R
Sbjct: 311 KR 312
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
+ FS GQV+ + D S GY V + E+ +KA+ E+N ++GR
Sbjct: 70 EIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELNYNPIEGR 121
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG++ + D+ SK +G V + T E A+ A+ +NG LL+ R +FV
Sbjct: 156 LHDTFSAFGKILSCKVATDEF-GQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFV 212
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 39/54 (72%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F FG +T A ++M+ G+ SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FLPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG + ++ D+ N SKGYG V F T+E A++A+ +MNG LL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV 170
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 2 IADAFSQFGQVTKATIIMD-KGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F ++G ++ D GK SKG+G V+F E+AQKA+ EMNGK ++G+ +FV
Sbjct: 207 LKEMFGKYGPALSVKVMTDDNGK--SKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFV 263
>sp|Q4P8R9|PABP_USTMA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1
Length = 651
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F+ FG +T I M S+G+G V +S EEA KA++EMNGK+LD R L+V
Sbjct: 346 LREEFAPFGAITSCKI-MRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYV 402
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F++FG++T + D+ SKG+G V F EAQKA+ E++ G+ LFV
Sbjct: 247 FTKFGKITSCVLQRDE-DGKSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFV 299
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D F+ FG + + ++ S GYG V + T E A+ A+ +NG LL+ + ++V +
Sbjct: 151 LHDTFAAFGNILSCKVATNE--TGSLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGH 208
Query: 62 VRPSR 66
P +
Sbjct: 209 HIPRK 213
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS FG ++MD S+G+G V + EEAQKA+TEMNGK ++GR+++V
Sbjct: 207 LKEIFSAFGNTLSVKVMMDNS-GRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYV 263
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS +G +T ++ + G SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPYGTITSTKVMTEGGH--SKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + ++ D+ S+GYG V F T+E A +A+ MNG LL+ R +FV +
Sbjct: 115 LYDTFSAFGDILSCKVVCDE--YGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGH 172
Query: 62 VRPSRR 67
+ SRR
Sbjct: 173 FK-SRR 177
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F FG +T + +++D SKG+G V FST EEA KA+TEMN ++++G+ L+V
Sbjct: 367 LEEEFKPFGTITSSKVMVDDA-GKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYV 423
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG++ + D SK +G V + TEE AQ A+ +NG LL+ R ++V
Sbjct: 171 LHDTFSAFGKILSVKVATDD-LGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYV 227
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 6 FSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
F+ FG++T +I ++K + SKG+G V F E A KA+ E+N K ++G+ ++V +
Sbjct: 268 FAPFGKIT--SIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQK 325
Query: 65 SRR 67
R
Sbjct: 326 KRE 328
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
FS GQV + D S GY V + E+ +KA+ E+N ++GR
Sbjct: 87 FSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGEKAIEELNYTPVEGR 136
>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1
PE=3 SV=2
Length = 631
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F FG +T A +++D SKG+G V FS+ EEA KA+TEMN +++ G+ L+V
Sbjct: 358 LEEEFKPFGTITSARVMVDDA-GKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYV 414
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
F FG VT + D+ + S+G+G V F E A A+ EMN K +DG+ L+V +
Sbjct: 259 FKPFGPVTSVHLETDQ-EGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKK 317
Query: 66 R 66
R
Sbjct: 318 R 318
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRV--LF 58
++ + FS GQV+ + D S GY V F + +A+ E+N L+DGR +
Sbjct: 73 LLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEELNYSLVDGRPCRIM 132
Query: 59 VDNVRPSRRYNTD 71
PS R N D
Sbjct: 133 WSQRDPSLRRNGD 145
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG++ + D+ SK +G V + T E A+ A+ +NG LL+ R +FV
Sbjct: 162 LHDTFSAFGRILSCKVATDE-LGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFV 218
>sp|Q43472|GRP_HORVU Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare
GN=blt801 PE=1 SV=1
Length = 161
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 43/65 (66%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ +AFS++G V + II D+ S+G+G VTF+++E ++A+ MNG+ LDGR + V+
Sbjct: 22 LQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNE 81
Query: 62 VRPSR 66
+ R
Sbjct: 82 AQSRR 86
>sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2
PE=2 SV=1
Length = 168
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 38/60 (63%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
AF+ FGQV + +I D+ S+G+G VTFS+E+ A+ MNGK LDGR + V+ +
Sbjct: 27 AFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQS 86
>sp|P98179|RBM3_HUMAN Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1
Length = 157
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG +++ ++ D+ S+G+G +TF+ E A A+ MNG+ LDGR + VD+
Sbjct: 22 LEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDH 81
Query: 62 VRPSRR 67
S R
Sbjct: 82 AGKSAR 87
>sp|O89086|RBM3_MOUSE Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1
Length = 153
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG +++ ++ D+ S+G+G +TF+ E A A+ MNG+ LDGR + VD+
Sbjct: 22 LEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDH 81
Query: 62 V 62
Sbjct: 82 A 82
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
FS++GQV + ++ D+ S+G+G VTF E+A+ A+ MNGK +DGR + VD S
Sbjct: 26 FSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQAGKS 85
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS +G +T A ++ + G SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPYGTITSAKVMTEGGH--SKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS FG ++MD S+G+G V + EEAQKA++EMNGK ++GR+++V
Sbjct: 207 LREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYV 263
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + ++ D+ + S+GYG V F T+E A +A+ MNG LL+ R +FV +
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGH 172
Query: 62 VRPSRR 67
+ SRR
Sbjct: 173 FK-SRR 177
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 42/59 (71%), Gaps = 3/59 (5%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F FG +T A +++D+ GK SKG+G V FS+ EEA KA+TEMN +++ G+ L+V
Sbjct: 351 LEEEFKPFGSITSARVMVDETGK--SKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYV 407
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRV--LF 58
++ + FS GQV + D S GY V F E+ +KA+ ++N L++GR +
Sbjct: 66 LLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEGRPCRIM 125
Query: 59 VDNVRPSRRYNTD 71
PS R N D
Sbjct: 126 WSQRDPSLRRNGD 138
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
F +G++T + D + SKG+G V F E A KA+ E+N K ++G+ ++V +
Sbjct: 252 FEAYGKITSIYLEKDH-EGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKK 310
Query: 66 R 66
R
Sbjct: 311 R 311
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + FS FG ++MD S+G+G V + EEAQKA++EMNGK ++GR+++V
Sbjct: 207 LREIFSAFGNTLSVKVMMDDS-GRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYV 263
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + ++ D+ + S+GYG V F T E A +A+ MNG LL+ R +FV +
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGH 172
Query: 62 VRPSRR 67
+ SRR
Sbjct: 173 FK-SRR 177
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
F +G +T A ++ + G SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FLPYGTITSAKVMTEGGH--SKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
>sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1
Length = 157
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ AFSQFG +T + II D+ S+G+G VTF E+ + A+ MNG+ LDGR + V+
Sbjct: 22 LEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNE 81
Query: 62 VRP 64
+
Sbjct: 82 AQS 84
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b
PE=1 SV=1
Length = 166
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 39/60 (65%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
FS++GQ+++ ++ D+ S+G+G VTF ++A+ A+ MNGK +DGR + VD S
Sbjct: 25 FSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAVDGRQIRVDQAGKS 84
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS +G +T A ++ + G SKG+G V FS+ EEA KA+TEMNG+++ + L+V
Sbjct: 314 FSPYGVITSAKVMTEGGH--SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 365
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FSQFG++ ++ D + S+ +G V F EEAQKA+ MNGK + GR+L+
Sbjct: 207 LQDLFSQFGKMLSVKVMRDNSGH-SRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 263
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG + + D+ + S+G+G V F T E AQ+A+ MNG LL+ R +FV +
Sbjct: 115 LYDTFSTFGNILSCKVACDE--HGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGH 172
Query: 62 VRPSRR 67
+ SRR
Sbjct: 173 FK-SRR 177
>sp|Q43349|ROC2_ARATH 29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP29 PE=1 SV=2
Length = 342
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD- 60
+ + F++ G+V +A +I D+ SKG+G VT S+ +E QKA+ +NG LDGR + V
Sbjct: 273 LENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSE 332
Query: 61 -NVRPSR 66
RP R
Sbjct: 333 AEARPPR 339
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 31/63 (49%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+A F G V +I DK S+G+G VT ST E + A + NG +GR L V+
Sbjct: 115 LAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNA 174
Query: 62 VRP 64
P
Sbjct: 175 GPP 177
>sp|Q925G0|RBM3_RAT Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1
SV=2
Length = 155
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ D FS FG +++ ++ D+ S+G+G +TF+ E A + MNG+ LDGR + VD+
Sbjct: 22 LEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMNGESLDGRQIRVDH 81
Query: 62 VRPSRR 67
S R
Sbjct: 82 AGKSAR 87
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 3/59 (5%)
Query: 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F FG +T A +++D+ GK SKG+G V FS+ EEA KA+TEMN ++ G+ L+V
Sbjct: 352 LEEEFKPFGTITSARVMVDETGK--SKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYV 408
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 6 FSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64
F+ +G +T +I ++K + SKG+G V + E A KA+ E+N K ++G+ ++V +
Sbjct: 253 FTPYGAIT--SIYLEKDAEGKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRAQK 310
Query: 65 SR 66
R
Sbjct: 311 KR 312
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
FS GQV+ + D S GY V + E+ +KA+ E+N ++GR
Sbjct: 72 FSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIEELNYSPIEGR 121
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ D FS FG++ + D SK +G V + T E A+ A+ +NG LL+ R +FV
Sbjct: 156 LHDTFSTFGKILSCKVATDD-MGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFV 212
>sp|Q9PTX2|CIRBP_LITCT Cold-inducible RNA-binding protein OS=Lithobates catesbeiana
GN=cirbp PE=2 SV=1
Length = 164
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 38/60 (63%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
FS++GQ+ + ++ D+ S+G+G VTF E+A+ A+ MNGK +DGR + VD S
Sbjct: 26 FSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTVDGRQIRVDQAGKS 85
>sp|P60050|PABP5_PONPY Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3
SV=1
Length = 382
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + FS FG +++A ++M+ G+ KG+G V FS+ EEA KA+ EMNG+++ + L V
Sbjct: 318 LKEEFSSFGSISRAKVMMEVGQ--GKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTL 375
Query: 62 VRPSRR 67
+ RR
Sbjct: 376 GQARRR 381
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F ++G +I D SKG+G V + T E AQKA+ +++GK +DG+VL+V
Sbjct: 215 LKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV 271
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG + ++ D N SKGY V F + A +A+ MNG L+ R ++V
Sbjct: 126 FSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
>sp|P60049|PABP5_PANTR Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3
SV=1
Length = 382
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + FS FG +++A ++M+ G+ KG+G V FS+ EEA KA+ EMNG+++ + L V
Sbjct: 318 LKEEFSSFGSISRAKVMMEVGQ--GKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTL 375
Query: 62 VRPSRR 67
+ RR
Sbjct: 376 GQARRR 381
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F ++G +I D SKG+G V + T E AQKA+ +++GK +DG+VL+V
Sbjct: 215 LKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV 271
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG + ++ D N SKGY V F + A +A+ MNG L+ R ++V
Sbjct: 126 FSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
>sp|P60048|PABP5_HYLLA Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3
SV=1
Length = 382
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + FS FG +++A ++M+ G+ KG+G V FS+ EEA KA+ EMNG+++ + L V
Sbjct: 318 LKEEFSSFGSISRAKVMMEVGQ--GKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTL 375
Query: 62 VRPSRR 67
+ RR
Sbjct: 376 GQARRR 381
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F ++G +I D SKG+G V + T E AQKA+ +++GK +DG+VL+V
Sbjct: 215 LKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV 271
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG + ++ D N SKGY V F + A +A+ MNG L+ R ++V
Sbjct: 126 FSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
>sp|Q96DU9|PABP5_HUMAN Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=2 SV=1
Length = 382
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + FS FG +++A ++M+ G+ KG+G V FS+ EEA KA+ EMNG+++ + L V
Sbjct: 318 LKEEFSSFGSISRAKVMMEVGQ--GKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTL 375
Query: 62 VRPSRR 67
+ RR
Sbjct: 376 GQARRR 381
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F ++G +I D SKG+G V + T E AQKA+ +++GK +DG+VL+V
Sbjct: 215 LKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV 271
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG + ++ D N SKGY V F + A +A+ MNG L+ R ++V
Sbjct: 126 FSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
>sp|P60047|PABP5_GORGO Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla
GN=PABPC5 PE=3 SV=1
Length = 382
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + FS FG +++A ++M+ G+ KG+G V FS+ EEA KA+ EMNG+++ + L V
Sbjct: 318 LKEEFSSFGSISRAKVMMEVGQ--GKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTL 375
Query: 62 VRPSRR 67
+ RR
Sbjct: 376 GQARRR 381
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F ++G +I D SKG+G V + T E AQKA+ +++GK +DG+VL+V
Sbjct: 215 LKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV 271
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG + ++ D N SKGY V F + A +A+ MNG L+ R ++V
Sbjct: 126 FSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F+ FG +T A ++ D+ N S+G+G V FST EEA KA+TE N +++ G+ L+V
Sbjct: 338 LKEEFAPFGTITSAKVMRDETGN-SRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYV 394
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%)
Query: 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR 55
++ D FS G V+ + D NTS GY V F E KA+ ++N L+ G+
Sbjct: 53 LLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQLNYTLIKGK 107
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
F ++G++T A + D + +G+G V F A KA+ E+N G+ L+V R
Sbjct: 239 FGKYGKITSAVLEKD-SEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVG--RAQ 295
Query: 66 RRY 68
++Y
Sbjct: 296 KKY 298
>sp|P0C8Z4|RMXL3_PANTR RNA-binding motif protein, X-linked-like-3 OS=Pan troglodytes
GN=RBMXL3 PE=4 SV=1
Length = 992
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV-DNVRP 64
F ++G + K +I D+ N S+G+ VTF + +A+ A +MNGK LDG+ + V ++P
Sbjct: 28 FGKYGHIIKVFLIKDRKTNKSRGFAFVTFESPADAKAAARDMNGKYLDGKAIMVAQTIKP 87
Query: 65 SRRYNTDVP 73
+ + VP
Sbjct: 88 AFESSRWVP 96
>sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana
GN=At2g37220 PE=1 SV=1
Length = 289
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD--NVR 63
FS+ G+V +A +I D+ SKG+G VT+ + +E Q A+ ++G LDGR + V R
Sbjct: 224 FSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283
Query: 64 PSRR 67
P RR
Sbjct: 284 PPRR 287
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+A F G V +I DK S+G+G VT S+ E + A + NG LDGR L V+
Sbjct: 107 LAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNA 166
Query: 62 VRP 64
P
Sbjct: 167 GPP 169
>sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1
Length = 169
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 38/59 (64%)
Query: 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63
AFSQFG++ + II D+ S+G+G VTF E+ + A+ MNG+ LDGR + V+ +
Sbjct: 27 AFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85
>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 276
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ FS+ G+V A ++ D+ S+G+G VT S+E E +A+ ++G+ LDGR + V+
Sbjct: 207 LEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNA 266
Query: 62 VRPSRRYNT 70
R NT
Sbjct: 267 AEERPRRNT 275
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+A F Q G V A +I ++ + S+G+G VT ST EEA KA+ + L+GR+L V+
Sbjct: 113 LAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNK 172
Query: 62 V-----RPSRRYNTDVPLARLKI 79
RP R T P R+ +
Sbjct: 173 AAPRGSRPERAPRTFQPTYRIYV 195
>sp|Q8N7X1|RMXL3_HUMAN RNA-binding motif protein, X-linked-like-3 OS=Homo sapiens
GN=RBMXL3 PE=2 SV=2
Length = 1067
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV-DNVRP 64
F ++G + K ++ D+ N S+G+ VTF + +A+ A +MNGK LDG+ + V ++P
Sbjct: 28 FGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPADAKAAARDMNGKYLDGKAIMVAQTIKP 87
Query: 65 SRRYNTDVP 73
+ + + VP
Sbjct: 88 AFKSSRWVP 96
>sp|Q7JGR2|PABP5_MACMU Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3
SV=1
Length = 382
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61
+ + FS FG +++A ++M+ G+ KG+G V FS+ EEA KA+ EMNG+++ + L V
Sbjct: 318 LKEEFSSFGSISRAKVMMEVGQ--GKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTL 375
Query: 62 VRPSRR 67
+ RR
Sbjct: 376 GQARRR 381
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
+ + F ++G +I D SKG+G V + T E AQKA+ +++GK +DG+VL+V
Sbjct: 215 LKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV 271
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59
FS FG + ++ D N SKGY V F + A +A+ MNG L+ R ++V
Sbjct: 126 FSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2
SV=1
Length = 172
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 39/60 (65%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
FS++GQ+++ ++ D+ S+G+G VTF ++A+ A+ MNGK +DGR + VD S
Sbjct: 26 FSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS 85
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1
SV=1
Length = 172
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 39/60 (65%)
Query: 6 FSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65
FS++GQ+++ ++ D+ S+G+G VTF ++A+ A+ MNGK +DGR + VD S
Sbjct: 26 FSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS 85
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,375,525
Number of Sequences: 539616
Number of extensions: 897258
Number of successful extensions: 4265
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 103
Number of HSP's that attempted gapping in prelim test: 3052
Number of HSP's gapped (non-prelim): 1282
length of query: 80
length of database: 191,569,459
effective HSP length: 51
effective length of query: 29
effective length of database: 164,049,043
effective search space: 4757422247
effective search space used: 4757422247
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)