Query 035722
Match_columns 80
No_of_seqs 120 out of 1836
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 05:46:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035722.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035722hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.8 1.4E-17 3.1E-22 89.7 9.8 67 1-67 50-116 (144)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 7.8E-17 1.7E-21 96.7 9.3 66 2-67 286-351 (352)
3 KOG0122 Translation initiation 99.7 1.4E-16 2.9E-21 90.7 7.7 65 2-66 206-270 (270)
4 PF13893 RRM_5: RNA recognitio 99.7 1.1E-15 2.3E-20 70.5 8.1 56 2-62 1-56 (56)
5 KOG0148 Apoptosis-promoting RN 99.7 3.1E-16 6.6E-21 90.5 6.7 66 2-67 79-144 (321)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.5E-15 3.2E-20 91.2 9.0 67 1-67 19-85 (352)
7 KOG0125 Ataxin 2-binding prote 99.6 8.5E-16 1.8E-20 90.5 7.0 68 1-70 112-179 (376)
8 TIGR01659 sex-lethal sex-letha 99.6 3.2E-15 7E-20 90.0 8.1 66 1-66 123-188 (346)
9 smart00361 RRM_1 RNA recogniti 99.6 8.8E-15 1.9E-19 70.2 8.0 59 2-60 5-70 (70)
10 KOG4207 Predicted splicing fac 99.6 7E-16 1.5E-20 86.3 4.6 64 2-65 30-93 (256)
11 KOG0149 Predicted RNA-binding 99.6 1.9E-15 4.1E-20 85.6 6.0 62 2-64 29-90 (247)
12 KOG0145 RNA-binding protein EL 99.6 3.3E-15 7.2E-20 86.2 6.8 66 2-67 58-123 (360)
13 PF00076 RRM_1: RNA recognitio 99.6 5.9E-14 1.3E-18 66.7 8.8 56 2-58 15-70 (70)
14 KOG0111 Cyclophilin-type pepti 99.6 3.8E-15 8.3E-20 84.2 4.1 69 2-70 27-95 (298)
15 TIGR01645 half-pint poly-U bin 99.6 3.7E-14 8E-19 90.1 8.9 66 2-67 221-286 (612)
16 TIGR01645 half-pint poly-U bin 99.5 5.5E-14 1.2E-18 89.3 8.2 62 2-63 124-185 (612)
17 TIGR01628 PABP-1234 polyadenyl 99.5 1.1E-13 2.3E-18 87.7 9.3 64 2-65 17-80 (562)
18 TIGR01659 sex-lethal sex-letha 99.5 2.2E-13 4.7E-18 82.2 9.2 65 2-66 210-276 (346)
19 TIGR01628 PABP-1234 polyadenyl 99.5 1.4E-13 3.1E-18 87.1 7.3 64 2-66 302-365 (562)
20 smart00360 RRM RNA recognition 99.5 5.1E-13 1.1E-17 62.9 7.4 59 2-60 13-71 (71)
21 KOG0131 Splicing factor 3b, su 99.5 7E-14 1.5E-18 76.9 4.6 63 1-63 25-87 (203)
22 KOG0113 U1 small nuclear ribon 99.5 2.9E-13 6.2E-18 79.2 7.3 62 2-63 118-179 (335)
23 KOG0145 RNA-binding protein EL 99.5 6.1E-13 1.3E-17 77.0 8.1 64 2-65 295-358 (360)
24 TIGR01622 SF-CC1 splicing fact 99.5 8.6E-13 1.9E-17 81.7 9.3 63 2-64 203-265 (457)
25 TIGR01642 U2AF_lg U2 snRNP aux 99.5 1.2E-12 2.6E-17 81.9 9.6 66 1-66 311-376 (509)
26 KOG0121 Nuclear cap-binding pr 99.5 1.9E-13 4.2E-18 71.6 5.0 65 1-65 52-116 (153)
27 PF14259 RRM_6: RNA recognitio 99.5 3.3E-12 7.1E-17 60.9 8.9 56 2-58 15-70 (70)
28 PLN03120 nucleic acid binding 99.4 2.5E-12 5.3E-17 74.6 8.5 59 2-64 21-79 (260)
29 KOG0130 RNA-binding protein RB 99.4 2.8E-13 6E-18 71.6 4.1 62 2-63 89-150 (170)
30 KOG0108 mRNA cleavage and poly 99.4 5.3E-13 1.2E-17 82.2 5.4 69 1-69 34-102 (435)
31 KOG0146 RNA-binding protein ET 99.4 3.5E-13 7.5E-18 78.2 3.9 68 2-69 302-369 (371)
32 KOG0126 Predicted RNA-binding 99.4 1.6E-13 3.4E-18 75.6 2.3 61 3-63 53-113 (219)
33 KOG0144 RNA-binding protein CU 99.4 8.9E-13 1.9E-17 80.3 5.6 68 1-68 50-120 (510)
34 PLN03213 repressor of silencin 99.4 1.8E-12 4E-17 80.5 6.8 60 2-65 27-88 (759)
35 TIGR01622 SF-CC1 splicing fact 99.4 4.7E-12 1E-16 78.5 8.3 63 2-65 106-168 (457)
36 smart00362 RRM_2 RNA recogniti 99.4 8.8E-12 1.9E-16 58.8 7.5 57 2-60 16-72 (72)
37 KOG0107 Alternative splicing f 99.3 4.6E-12 9.9E-17 69.4 6.0 61 2-67 27-87 (195)
38 KOG0117 Heterogeneous nuclear 99.3 6.4E-12 1.4E-16 76.9 7.1 63 2-64 100-163 (506)
39 KOG0127 Nucleolar protein fibr 99.3 4.5E-12 9.8E-17 79.2 6.6 68 2-70 134-201 (678)
40 KOG0144 RNA-binding protein CU 99.3 2.5E-12 5.4E-17 78.4 5.2 67 2-69 141-210 (510)
41 KOG0124 Polypyrimidine tract-b 99.3 2.2E-12 4.8E-17 77.6 4.3 61 1-61 129-189 (544)
42 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 2E-11 4.4E-16 76.4 8.3 60 1-65 292-351 (481)
43 PLN03121 nucleic acid binding 99.3 2.1E-11 4.5E-16 70.0 7.6 59 1-63 21-79 (243)
44 COG0724 RNA-binding proteins ( 99.3 2.5E-11 5.4E-16 69.7 7.7 63 2-64 132-194 (306)
45 KOG0147 Transcriptional coacti 99.3 8.6E-12 1.9E-16 77.6 6.0 67 1-67 294-360 (549)
46 TIGR01648 hnRNP-R-Q heterogene 99.3 1.7E-11 3.7E-16 77.9 6.9 60 2-62 75-135 (578)
47 KOG0148 Apoptosis-promoting RN 99.3 4.5E-11 9.8E-16 69.5 7.7 60 2-67 181-240 (321)
48 KOG4208 Nucleolar RNA-binding 99.3 2E-11 4.3E-16 68.3 5.9 64 2-65 66-130 (214)
49 TIGR01642 U2AF_lg U2 snRNP aux 99.3 4.8E-11 1E-15 74.8 8.2 63 2-64 436-501 (509)
50 cd00590 RRM RRM (RNA recogniti 99.3 1.4E-10 3.1E-15 54.8 8.2 59 2-61 16-74 (74)
51 KOG0123 Polyadenylate-binding 99.2 5.5E-11 1.2E-15 72.4 6.7 63 1-66 14-76 (369)
52 KOG0415 Predicted peptidyl pro 99.2 2.8E-11 6.1E-16 72.6 5.2 65 2-66 256-320 (479)
53 TIGR01648 hnRNP-R-Q heterogene 99.2 1.3E-10 2.8E-15 74.0 8.3 59 1-67 249-309 (578)
54 KOG4206 Spliceosomal protein s 99.2 4.7E-11 1E-15 67.6 5.3 63 2-67 30-92 (221)
55 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 2.5E-10 5.4E-15 71.6 8.2 60 2-65 113-174 (481)
56 KOG0123 Polyadenylate-binding 99.2 2.6E-10 5.5E-15 69.6 7.2 65 2-69 93-157 (369)
57 KOG0109 RNA-binding protein LA 99.2 1.2E-10 2.7E-15 68.3 5.5 56 2-65 19-74 (346)
58 KOG0117 Heterogeneous nuclear 99.1 1.3E-10 2.8E-15 71.3 5.8 61 1-69 275-335 (506)
59 KOG0127 Nucleolar protein fibr 99.1 9E-11 2E-15 73.6 5.1 69 1-69 21-89 (678)
60 KOG4661 Hsp27-ERE-TATA-binding 99.1 3E-10 6.6E-15 71.9 7.0 66 2-67 422-487 (940)
61 KOG0131 Splicing factor 3b, su 99.1 2E-10 4.3E-15 63.5 4.0 67 1-67 112-179 (203)
62 KOG0146 RNA-binding protein ET 99.1 4.9E-10 1.1E-14 65.4 5.5 66 2-68 36-104 (371)
63 KOG4205 RNA-binding protein mu 99.0 2.6E-10 5.6E-15 68.0 3.1 67 2-69 23-89 (311)
64 KOG0114 Predicted RNA-binding 99.0 3.5E-09 7.6E-14 53.9 6.6 63 2-67 35-97 (124)
65 KOG0109 RNA-binding protein LA 99.0 1.7E-09 3.8E-14 63.6 5.3 61 2-70 95-155 (346)
66 KOG0124 Polypyrimidine tract-b 98.9 2.7E-09 5.9E-14 64.7 5.1 64 2-65 227-290 (544)
67 KOG0110 RNA-binding protein (R 98.9 1.7E-09 3.6E-14 69.4 3.4 66 2-67 630-695 (725)
68 KOG0105 Alternative splicing f 98.9 4.9E-09 1.1E-13 58.4 4.7 61 2-65 23-83 (241)
69 KOG0110 RNA-binding protein (R 98.9 2.8E-08 6.1E-13 64.0 8.5 62 2-63 532-596 (725)
70 KOG4212 RNA-binding protein hn 98.9 9.5E-09 2.1E-13 63.5 6.0 62 2-64 61-123 (608)
71 KOG4205 RNA-binding protein mu 98.8 7.6E-09 1.6E-13 61.8 4.4 68 2-70 114-181 (311)
72 KOG0153 Predicted RNA-binding 98.7 2.2E-07 4.8E-12 55.9 7.1 58 2-65 245-303 (377)
73 KOG1190 Polypyrimidine tract-b 98.6 2.2E-07 4.8E-12 57.1 6.5 57 2-63 315-371 (492)
74 KOG4209 Splicing factor RNPS1, 98.6 1.5E-07 3.3E-12 54.4 5.5 63 2-65 118-180 (231)
75 KOG0147 Transcriptional coacti 98.5 2.1E-07 4.6E-12 58.6 4.4 63 2-65 196-258 (549)
76 KOG0132 RNA polymerase II C-te 98.5 5.6E-07 1.2E-11 58.9 5.8 58 2-65 438-495 (894)
77 KOG0226 RNA-binding proteins [ 98.5 1.2E-07 2.7E-12 55.0 2.5 65 2-66 207-271 (290)
78 KOG0533 RRM motif-containing p 98.4 1.4E-06 3E-11 50.7 6.3 64 2-66 100-163 (243)
79 KOG2314 Translation initiation 98.3 1.6E-06 3.5E-11 55.2 5.1 60 2-62 81-141 (698)
80 COG5175 MOT2 Transcriptional r 98.3 2.4E-06 5.2E-11 51.7 5.6 62 3-64 138-202 (480)
81 KOG0116 RasGAP SH3 binding pro 98.3 2.7E-06 5.9E-11 52.9 5.7 66 1-67 304-369 (419)
82 KOG4212 RNA-binding protein hn 98.3 1.6E-06 3.5E-11 54.0 4.1 57 1-62 552-608 (608)
83 KOG0120 Splicing factor U2AF, 98.2 1.4E-06 3.1E-11 55.0 2.6 67 1-67 305-371 (500)
84 PF04059 RRM_2: RNA recognitio 98.1 3.6E-05 7.9E-10 39.1 6.4 55 9-63 27-85 (97)
85 KOG0120 Splicing factor U2AF, 98.1 3.3E-05 7.1E-10 49.1 7.0 63 2-64 426-491 (500)
86 KOG4660 Protein Mei2, essentia 98.0 1.5E-06 3.3E-11 55.0 0.9 52 2-58 92-143 (549)
87 KOG4454 RNA binding protein (R 98.0 5.7E-06 1.2E-10 47.5 3.1 59 2-62 26-84 (267)
88 KOG0151 Predicted splicing reg 98.0 1.1E-05 2.3E-10 52.9 4.6 64 2-65 191-257 (877)
89 KOG1548 Transcription elongati 98.0 6.4E-05 1.4E-09 45.7 7.3 61 2-66 293-353 (382)
90 PF11608 Limkain-b1: Limkain b 98.0 3.5E-05 7.6E-10 38.1 4.8 55 2-66 23-78 (90)
91 KOG0106 Alternative splicing f 97.9 1.4E-05 3.1E-10 45.8 3.6 55 2-64 18-72 (216)
92 KOG1548 Transcription elongati 97.9 5.2E-05 1.1E-09 46.1 5.6 64 2-66 151-222 (382)
93 KOG1457 RNA binding protein (c 97.9 0.00029 6.3E-09 40.8 7.7 66 2-67 51-120 (284)
94 PF05172 Nup35_RRM: Nup53/35/4 97.8 0.00018 3.8E-09 36.8 6.1 62 2-64 22-91 (100)
95 PF08952 DUF1866: Domain of un 97.8 0.00028 6E-09 38.3 7.0 55 2-65 53-107 (146)
96 KOG1456 Heterogeneous nuclear 97.6 0.00039 8.4E-09 43.0 6.5 59 2-65 305-363 (494)
97 KOG2202 U2 snRNP splicing fact 97.6 2.2E-05 4.9E-10 45.8 0.9 61 4-65 87-148 (260)
98 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00021 4.6E-09 32.4 3.8 37 2-44 17-53 (53)
99 KOG4210 Nuclear localization s 97.5 4.6E-05 1E-09 45.5 1.4 66 2-68 202-267 (285)
100 KOG1456 Heterogeneous nuclear 97.4 0.0013 2.8E-08 40.8 6.6 61 2-67 139-201 (494)
101 KOG1995 Conserved Zn-finger pr 97.3 0.00018 3.8E-09 43.8 2.3 65 2-66 83-155 (351)
102 KOG4211 Splicing factor hnRNP- 97.3 0.0014 3E-08 41.7 5.9 60 2-65 27-86 (510)
103 KOG1190 Polypyrimidine tract-b 97.2 0.00075 1.6E-08 42.1 3.9 56 2-62 167-225 (492)
104 PF08777 RRM_3: RNA binding mo 97.1 0.002 4.4E-08 33.2 4.7 43 2-50 18-60 (105)
105 KOG0106 Alternative splicing f 97.1 0.00035 7.7E-09 40.2 1.7 54 2-63 116-169 (216)
106 KOG2068 MOT2 transcription fac 97.0 0.00023 5.1E-09 43.0 0.9 62 4-65 99-163 (327)
107 KOG2135 Proteins containing th 97.0 0.00043 9.3E-09 43.8 2.0 58 2-66 390-447 (526)
108 KOG1996 mRNA splicing factor [ 96.8 0.0083 1.8E-07 36.3 6.1 60 3-62 304-364 (378)
109 KOG4211 Splicing factor hnRNP- 96.7 0.0048 1E-07 39.3 4.8 60 2-63 120-180 (510)
110 KOG4285 Mitotic phosphoprotein 96.7 0.0062 1.3E-07 36.8 4.8 55 2-63 213-268 (350)
111 KOG4206 Spliceosomal protein s 96.4 0.016 3.6E-07 33.5 5.1 57 2-63 163-220 (221)
112 PF15023 DUF4523: Protein of u 96.1 0.027 6E-07 30.7 4.8 52 4-63 109-160 (166)
113 PF04847 Calcipressin: Calcipr 96.1 0.041 8.9E-07 31.2 5.8 59 2-66 12-72 (184)
114 KOG4307 RNA binding protein RB 96.0 0.034 7.4E-07 37.4 5.6 60 2-61 884-943 (944)
115 KOG0112 Large RNA-binding prot 95.9 0.0073 1.6E-07 41.1 2.5 60 2-67 472-533 (975)
116 KOG3152 TBP-binding protein, a 95.3 0.0044 9.6E-08 36.6 -0.0 55 2-56 91-157 (278)
117 KOG1855 Predicted RNA-binding 95.0 0.012 2.6E-07 37.1 1.1 50 2-51 248-310 (484)
118 PF03880 DbpA: DbpA RNA bindin 94.7 0.16 3.4E-06 24.4 4.5 33 29-62 42-74 (74)
119 KOG4849 mRNA cleavage factor I 94.6 0.026 5.6E-07 35.0 1.8 46 11-56 108-153 (498)
120 KOG1365 RNA-binding protein Fu 94.2 0.061 1.3E-06 33.8 2.8 59 4-63 299-360 (508)
121 PF11767 SET_assoc: Histone ly 94.1 0.19 4.2E-06 23.8 3.8 30 30-59 36-65 (66)
122 KOG0128 RNA-binding protein SA 93.3 0.037 8.1E-07 37.6 0.9 63 2-65 753-815 (881)
123 PF07576 BRAP2: BRCA1-associat 93.2 0.65 1.4E-05 24.2 6.4 43 10-54 39-81 (110)
124 KOG4660 Protein Mei2, essentia 92.9 0.49 1.1E-05 31.0 5.3 55 9-63 413-471 (549)
125 PF08675 RNA_bind: RNA binding 92.8 0.66 1.4E-05 23.1 5.3 40 2-49 25-64 (87)
126 PF10309 DUF2414: Protein of u 92.7 0.53 1.2E-05 22.0 4.3 39 2-47 21-62 (62)
127 KOG4676 Splicing factor, argin 91.4 0.41 8.8E-06 30.4 3.6 61 1-62 23-87 (479)
128 KOG2416 Acinus (induces apopto 89.7 0.13 2.9E-06 34.0 0.6 57 1-63 460-520 (718)
129 smart00596 PRE_C2HC PRE_C2HC d 89.2 0.72 1.6E-05 22.1 2.7 59 1-62 3-62 (69)
130 KOG0128 RNA-binding protein SA 88.9 0.056 1.2E-06 36.8 -1.5 52 2-53 684-735 (881)
131 KOG0129 Predicted RNA-binding 87.6 1.7 3.7E-05 28.5 4.3 45 2-46 387-432 (520)
132 KOG2193 IGF-II mRNA-binding pr 87.4 0.21 4.5E-06 32.0 0.3 45 27-71 37-82 (584)
133 KOG4574 RNA-binding protein (c 87.2 0.5 1.1E-05 32.8 2.0 60 2-67 315-376 (1007)
134 KOG0105 Alternative splicing f 86.9 2.3 5.1E-05 24.5 4.2 45 2-53 132-176 (241)
135 KOG1457 RNA binding protein (c 85.3 2.6 5.7E-05 25.0 4.0 48 2-53 227-274 (284)
136 KOG4307 RNA binding protein RB 83.2 0.73 1.6E-05 31.5 1.3 58 4-62 453-511 (944)
137 PF07530 PRE_C2HC: Associated 83.1 3.3 7.2E-05 19.6 3.3 59 2-63 4-63 (68)
138 KOG0115 RNA-binding protein p5 83.0 1.5 3.2E-05 26.4 2.4 47 2-49 48-94 (275)
139 KOG1365 RNA-binding protein Fu 82.6 4.6 0.0001 25.9 4.5 55 2-58 178-236 (508)
140 PF02714 DUF221: Domain of unk 81.6 3.3 7.3E-05 25.1 3.7 35 30-66 1-35 (325)
141 PF15513 DUF4651: Domain of un 77.7 5.9 0.00013 18.6 3.4 17 1-17 10-26 (62)
142 KOG4454 RNA binding protein (R 71.1 0.61 1.3E-05 27.5 -1.4 57 2-59 101-157 (267)
143 PF03439 Spt5-NGN: Early trans 70.8 10 0.00022 18.6 3.1 27 25-51 42-68 (84)
144 KOG0804 Cytoplasmic Zn-finger 70.1 14 0.00031 24.2 4.2 43 10-54 100-142 (493)
145 KOG4210 Nuclear localization s 67.4 4.1 9E-05 24.8 1.5 54 5-58 108-161 (285)
146 KOG0112 Large RNA-binding prot 62.0 2.3 4.9E-05 29.9 -0.2 60 2-62 389-448 (975)
147 KOG2253 U1 snRNP complex, subu 51.4 5.9 0.00013 27.0 0.3 49 4-61 59-107 (668)
148 PF04026 SpoVG: SpoVG; InterP 50.9 31 0.00068 17.1 4.4 25 12-36 3-27 (84)
149 PF03467 Smg4_UPF3: Smg-4/UPF3 50.5 45 0.00098 18.8 5.0 38 27-64 55-97 (176)
150 KOG0829 60S ribosomal protein 46.7 30 0.00064 19.4 2.5 44 4-47 46-90 (169)
151 PF11823 DUF3343: Protein of u 45.6 35 0.00075 16.1 2.9 26 29-54 3-28 (73)
152 KOG4019 Calcineurin-mediated s 43.1 66 0.0014 18.7 3.6 39 28-66 52-91 (193)
153 PRK13259 regulatory protein Sp 42.8 48 0.001 16.9 4.2 25 12-36 3-27 (94)
154 PF07292 NID: Nmi/IFP 35 domai 40.2 52 0.0011 16.5 4.1 31 30-61 1-33 (88)
155 PF03468 XS: XS domain; Inter 37.1 67 0.0014 16.9 4.8 41 2-45 34-75 (116)
156 PF08206 OB_RNB: Ribonuclease 33.7 34 0.00075 15.4 1.3 11 26-36 7-17 (58)
157 KOG2591 c-Mpl binding protein, 33.0 56 0.0012 22.4 2.6 29 30-58 215-245 (684)
158 TIGR02542 B_forsyth_147 Bacter 32.2 45 0.00097 17.9 1.7 16 2-17 18-33 (145)
159 COG2088 SpoVG Uncharacterized 27.6 95 0.0021 15.7 3.6 26 11-36 2-27 (95)
160 PRK11634 ATP-dependent RNA hel 26.1 2.3E+02 0.005 19.6 4.6 34 29-63 528-561 (629)
161 PRK15464 cold shock-like prote 25.6 40 0.00086 16.0 0.8 11 26-36 15-25 (70)
162 PRK09937 stationary phase/star 24.4 47 0.001 16.0 1.0 11 26-36 12-22 (74)
163 PRK15463 cold shock-like prote 24.4 46 0.00099 15.8 0.9 11 26-36 15-25 (70)
164 PRK14998 cold shock-like prote 23.9 49 0.0011 15.8 0.9 11 26-36 12-22 (73)
165 KOG2891 Surface glycoprotein [ 23.6 35 0.00075 21.2 0.5 17 2-18 178-194 (445)
166 PRK09507 cspE cold shock prote 23.4 46 0.00099 15.6 0.8 11 26-36 14-24 (69)
167 KOG2318 Uncharacterized conser 23.2 2E+02 0.0043 20.1 3.7 35 29-63 270-306 (650)
168 COG5594 Uncharacterized integr 22.2 1.6E+02 0.0036 21.2 3.4 21 27-47 357-377 (827)
169 PRK10943 cold shock-like prote 22.2 48 0.001 15.6 0.7 11 26-36 14-24 (69)
170 TIGR02381 cspD cold shock doma 22.1 56 0.0012 15.2 1.0 11 26-36 12-22 (68)
171 PRK09213 pur operon repressor; 21.7 2.1E+02 0.0045 17.6 4.4 39 2-47 47-87 (271)
172 TIGR00405 L26e_arch ribosomal 21.3 1.4E+02 0.003 16.0 2.5 26 25-50 36-61 (145)
173 PRK09890 cold shock protein Cs 21.3 53 0.0012 15.5 0.8 11 26-36 15-25 (70)
174 PF09180 ProRS-C_1: Prolyl-tRN 20.7 1.2E+02 0.0025 14.2 1.9 30 27-56 11-40 (68)
175 PRK10354 RNA chaperone/anti-te 20.6 56 0.0012 15.3 0.8 11 26-36 15-25 (70)
176 PRK08559 nusG transcription an 20.5 1.7E+02 0.0036 16.1 3.0 25 26-50 45-69 (153)
177 PF13046 DUF3906: Protein of u 20.1 1.2E+02 0.0026 14.3 2.2 20 2-21 35-54 (64)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.77 E-value=1.4e-17 Score=89.67 Aligned_cols=67 Identities=37% Similarity=0.661 Sum_probs=63.0
Q ss_pred CHHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
.|+++|.+||.|.++.++.|+.+++++|||||+|.+.++|+.|+..+|+..+.|+.|+|+++.++..
T Consensus 50 ~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~~~~ 116 (144)
T PLN03134 50 SLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPS 116 (144)
T ss_pred HHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCcCCC
Confidence 3789999999999999999999999999999999999999999999999999999999999976654
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.72 E-value=7.8e-17 Score=96.68 Aligned_cols=66 Identities=35% Similarity=0.474 Sum_probs=63.2
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
|+++|++||.|.+++++.|+.++.++|||||.|.+.++|..|+..|||..++|+.|+|.|..++..
T Consensus 286 L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 286 LWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 789999999999999999999999999999999999999999999999999999999999987764
No 3
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=1.4e-16 Score=90.67 Aligned_cols=65 Identities=32% Similarity=0.584 Sum_probs=62.7
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSR 66 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~ 66 (80)
|+++|.+||.|..+.+.+|+.||.++|||||+|.+.++|.+|+..|||.-+++-.|+|+|++|+.
T Consensus 206 L~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwskP~~ 270 (270)
T KOG0122|consen 206 LEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSKPSN 270 (270)
T ss_pred HHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999863
No 4
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.68 E-value=1.1e-15 Score=70.46 Aligned_cols=56 Identities=39% Similarity=0.685 Sum_probs=50.4
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEec
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV 62 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~ 62 (80)
|+++|++||+|..+.+..+. ++++||+|.+.++|..|++.||+..+.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999886553 579999999999999999999999999999999986
No 5
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=3.1e-16 Score=90.49 Aligned_cols=66 Identities=35% Similarity=0.623 Sum_probs=63.0
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
|++.|.+||+|.++++++|..|++++||+||.|.+.++|+.||..+||..|.+|.|+-.|+..++.
T Consensus 79 lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~ 144 (321)
T KOG0148|consen 79 LREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPS 144 (321)
T ss_pred HHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCcc
Confidence 789999999999999999999999999999999999999999999999999999999999976653
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.66 E-value=1.5e-15 Score=91.22 Aligned_cols=67 Identities=31% Similarity=0.542 Sum_probs=62.9
Q ss_pred CHHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
.|+++|++||+|.+|+++.++.+++++|||||+|.+.++|..|+..||+..+.|+.|.|.++.+...
T Consensus 19 ~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~ 85 (352)
T TIGR01661 19 EIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSSD 85 (352)
T ss_pred HHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeeccccc
Confidence 3789999999999999999998999999999999999999999999999999999999999877653
No 7
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.65 E-value=8.5e-16 Score=90.52 Aligned_cols=68 Identities=29% Similarity=0.547 Sum_probs=61.3
Q ss_pred CHHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCCC
Q 035722 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYNT 70 (80)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~ 70 (80)
.|+.+|++||.|.+|+++.+. .-+||||||+|.+++++++|-.+|||..+.||.|+|+.+.++...+.
T Consensus 112 DL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATarV~n~K 179 (376)
T KOG0125|consen 112 DLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATARVHNKK 179 (376)
T ss_pred cHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchhhccCC
Confidence 388999999999999999874 45799999999999999999999999999999999999988865443
No 8
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.62 E-value=3.2e-15 Score=90.02 Aligned_cols=66 Identities=27% Similarity=0.455 Sum_probs=62.0
Q ss_pred CHHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCC
Q 035722 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSR 66 (80)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~ 66 (80)
.|+++|..||+|.+|+++.|+.+++++|||||+|.+.++|..|+..|++..+.++.|+|.++.+..
T Consensus 123 ~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~ 188 (346)
T TIGR01659 123 ELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGG 188 (346)
T ss_pred HHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccccc
Confidence 378999999999999999999899999999999999999999999999999999999999987643
No 9
>smart00361 RRM_1 RNA recognition motif.
Probab=99.62 E-value=8.8e-15 Score=70.22 Aligned_cols=59 Identities=34% Similarity=0.616 Sum_probs=52.6
Q ss_pred HHHHhc----cCCceeEEE-EeecCCC--CCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEE
Q 035722 2 IADAFS----QFGQVTKAT-IIMDKGK--NTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60 (80)
Q Consensus 2 l~~~f~----~~G~i~~~~-~~~~~~~--~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~ 60 (80)
|+++|. +||.+.++. +..++.+ +.++||+||.|.+.++|..|+..|||..+.|+.|.+.
T Consensus 5 l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 5 FEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred HHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 667777 999999995 7777666 8899999999999999999999999999999998763
No 10
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.62 E-value=7e-16 Score=86.25 Aligned_cols=64 Identities=33% Similarity=0.551 Sum_probs=60.9
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~ 65 (80)
|+.+|++||.|.+|.++.|+.|..++|||||.|....+|+.|+..|+|..++|+.|+|..|.-.
T Consensus 30 LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~aryg 93 (256)
T KOG4207|consen 30 LRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARYG 93 (256)
T ss_pred HHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhcC
Confidence 7899999999999999999999999999999999999999999999999999999999987644
No 11
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=1.9e-15 Score=85.60 Aligned_cols=62 Identities=35% Similarity=0.574 Sum_probs=57.5
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~ 64 (80)
|+++|++||+|++..|+.|+.+|+++||+||+|.+.+.+.+||+. ....|+||...++++.-
T Consensus 29 l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 29 LRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLASL 90 (247)
T ss_pred HHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhhh
Confidence 789999999999999999999999999999999999999999984 67789999998887754
No 12
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=3.3e-15 Score=86.18 Aligned_cols=66 Identities=29% Similarity=0.534 Sum_probs=63.7
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
++.+|+..|+|++|++++|+.+|.+-||+||.|.++++|++|+..|||..+..+.|+|+|+.|...
T Consensus 58 ~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~ 123 (360)
T KOG0145|consen 58 LRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSD 123 (360)
T ss_pred HHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCChh
Confidence 688999999999999999999999999999999999999999999999999999999999998865
No 13
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.58 E-value=5.9e-14 Score=66.71 Aligned_cols=56 Identities=43% Similarity=0.751 Sum_probs=52.7
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEE
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLF 58 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~ 58 (80)
|+++|++||.+..+.+..+ .++..+++|||+|.+.+++..|+..+++..+.|+.|+
T Consensus 15 l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 15 LRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp HHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred HHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7899999999999999988 5889999999999999999999999999999999885
No 14
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=3.8e-15 Score=84.16 Aligned_cols=69 Identities=29% Similarity=0.495 Sum_probs=64.4
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYNT 70 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~ 70 (80)
|..-|-+||.|..+.++.|..++++|||+||+|...++|..|+..+|+..+.|+.|+|++++|.+..+.
T Consensus 27 LhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~kikeg 95 (298)
T KOG0111|consen 27 LHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPEKIKEG 95 (298)
T ss_pred HHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCccccCC
Confidence 667789999999999999999999999999999999999999999999999999999999999876543
No 15
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.56 E-value=3.7e-14 Score=90.10 Aligned_cols=66 Identities=24% Similarity=0.388 Sum_probs=62.1
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
|+++|+.||.|.++.+..++.++.++|||||.|.+.+++..|+..+|+..++|+.|+|.++.+++.
T Consensus 221 Lk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP~ 286 (612)
T TIGR01645 221 IKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPD 286 (612)
T ss_pred HHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCcc
Confidence 789999999999999999998999999999999999999999999999999999999999976543
No 16
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.54 E-value=5.5e-14 Score=89.33 Aligned_cols=62 Identities=34% Similarity=0.553 Sum_probs=59.2
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~ 63 (80)
|+++|.+||+|.++.++.|+.+++++|||||+|.+.++++.|++.+|+..+.|+.|+|.+..
T Consensus 124 Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 124 IRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred HHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 78999999999999999999999999999999999999999999999999999999998654
No 17
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.54 E-value=1.1e-13 Score=87.66 Aligned_cols=64 Identities=31% Similarity=0.450 Sum_probs=60.5
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~ 65 (80)
|+++|.+||.|.+|++.+|..+++++|||||+|.+.++|++|+..+++..+.|+.|+|.|+...
T Consensus 17 L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 17 LYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred HHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 7899999999999999999989999999999999999999999999999999999999998543
No 18
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.52 E-value=2.2e-13 Score=82.20 Aligned_cols=65 Identities=29% Similarity=0.488 Sum_probs=59.9
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecC--EEEEEEecCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDG--RVLFVDNVRPSR 66 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~--~~i~v~~~~~~~ 66 (80)
|+++|++||.|..+.++.++.+++++|||||+|.+.++|+.|++.||+..+.+ +.|.|.++....
T Consensus 210 L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 210 LDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred HHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCccc
Confidence 78999999999999999999899999999999999999999999999998876 789999887553
No 19
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.49 E-value=1.4e-13 Score=87.10 Aligned_cols=64 Identities=39% Similarity=0.738 Sum_probs=60.3
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSR 66 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~ 66 (80)
|+++|++||.|.+++++.+ .++.++|||||+|.+.++|.+|+..+|+..+.|+.|.|.++..+.
T Consensus 302 L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~ 365 (562)
T TIGR01628 302 LRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKE 365 (562)
T ss_pred HHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcH
Confidence 7899999999999999999 489999999999999999999999999999999999999988654
No 20
>smart00360 RRM RNA recognition motif.
Probab=99.48 E-value=5.1e-13 Score=62.86 Aligned_cols=59 Identities=44% Similarity=0.746 Sum_probs=54.5
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEE
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~ 60 (80)
|+++|.+||.+..+.+..++.++.++|+||+.|.+.+.+..|+..+++..+.|+.+.|+
T Consensus 13 l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 13 LRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred HHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68899999999999999888788999999999999999999999999999999988763
No 21
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.48 E-value=7e-14 Score=76.86 Aligned_cols=63 Identities=32% Similarity=0.440 Sum_probs=60.2
Q ss_pred CHHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecC
Q 035722 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63 (80)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~ 63 (80)
+|.++|-+.|+|.++.+++|+.++.++||||++|.+.++++-|+..||...+.|++|+|+.+.
T Consensus 25 ~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 25 LLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred HHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 478899999999999999999999999999999999999999999999999999999999887
No 22
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=2.9e-13 Score=79.15 Aligned_cols=62 Identities=27% Similarity=0.583 Sum_probs=58.8
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~ 63 (80)
|+..|..||+|..+.|+.|..||+++|||||+|....+...|.+.-+|..|+|+.|.|.+-.
T Consensus 118 LrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvER 179 (335)
T KOG0113|consen 118 LRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVER 179 (335)
T ss_pred HHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEecc
Confidence 78899999999999999999999999999999999999999999999999999999888654
No 23
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=6.1e-13 Score=76.97 Aligned_cols=64 Identities=36% Similarity=0.498 Sum_probs=60.5
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~ 65 (80)
|.++|++||.|..+++++|..+.+.+||+||++.+-++|..|+..|||..+.++.+.|.+...+
T Consensus 295 LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 295 LWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred HHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 7899999999999999999999999999999999999999999999999999999999986543
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.47 E-value=8.6e-13 Score=81.73 Aligned_cols=63 Identities=33% Similarity=0.539 Sum_probs=59.9
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~ 64 (80)
|+++|.+||.|..+.++.++.++.++|||||+|.+.++|..|+..||+..+.|+.|.|.++..
T Consensus 203 l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 203 LRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 788999999999999999998899999999999999999999999999999999999999763
No 25
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.46 E-value=1.2e-12 Score=81.91 Aligned_cols=66 Identities=23% Similarity=0.348 Sum_probs=61.4
Q ss_pred CHHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCC
Q 035722 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSR 66 (80)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~ 66 (80)
.|+++|.+||.|..+.++.++.+|.++|||||+|.+.+.|..|+..|++..+.|+.|.|.++....
T Consensus 311 ~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~ 376 (509)
T TIGR01642 311 QIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGA 376 (509)
T ss_pred HHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCC
Confidence 378999999999999999998899999999999999999999999999999999999999986543
No 26
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=1.9e-13 Score=71.55 Aligned_cols=65 Identities=26% Similarity=0.387 Sum_probs=60.7
Q ss_pred CHHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCC
Q 035722 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65 (80)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~ 65 (80)
+|.++|+++|+|..|-|-+|+.+..+.|||||+|.+.++|+.|++.+++..++.++|++.|..--
T Consensus 52 qiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~GF 116 (153)
T KOG0121|consen 52 QIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAGF 116 (153)
T ss_pred HHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccccc
Confidence 57899999999999999999989999999999999999999999999999999999999986533
No 27
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.45 E-value=3.3e-12 Score=60.94 Aligned_cols=56 Identities=45% Similarity=0.736 Sum_probs=52.2
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEE
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLF 58 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~ 58 (80)
|.++|..||.|..+.+..++. +..+++|||+|.+.++|..|+..+++..+.|+.|+
T Consensus 15 l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 15 LRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp HHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred HHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 788999999999999999976 89999999999999999999999988999999874
No 28
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.42 E-value=2.5e-12 Score=74.57 Aligned_cols=59 Identities=19% Similarity=0.275 Sum_probs=54.1
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~ 64 (80)
|+++|+.||+|.++.++.++. .+|||||+|.++++++.|+. |++..+.|+.|+|..+..
T Consensus 21 LrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 21 IKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred HHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 789999999999999988863 46899999999999999996 999999999999998863
No 29
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.42 E-value=2.8e-13 Score=71.63 Aligned_cols=62 Identities=32% Similarity=0.511 Sum_probs=59.5
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~ 63 (80)
+...|..||+|.++.+.+|+.||..+||++|+|.+.+.|+.|+..+|+..+.|..|.|.|+.
T Consensus 89 i~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 89 IHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred HHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 57889999999999999999999999999999999999999999999999999999999985
No 30
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.41 E-value=5.3e-13 Score=82.19 Aligned_cols=69 Identities=28% Similarity=0.504 Sum_probs=64.3
Q ss_pred CHHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCC
Q 035722 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYN 69 (80)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~ 69 (80)
+|..+|+..|.|.+++++.|+.+|+.+||+|++|.+.+++..|++.||+..+.|+.|+|.|+.....++
T Consensus 34 ~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~~~~~ 102 (435)
T KOG0108|consen 34 QLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNRKNAE 102 (435)
T ss_pred HHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccccchhH
Confidence 378899999999999999999999999999999999999999999999999999999999998766543
No 31
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=3.5e-13 Score=78.22 Aligned_cols=68 Identities=31% Similarity=0.493 Sum_probs=64.0
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYN 69 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~ 69 (80)
|.++|.+||.|.+.++..|+.|..+++|+||.|.++..++.||..+||..|..++|+|....|+..++
T Consensus 302 liQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 302 LIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 369 (371)
T ss_pred HHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCccccCC
Confidence 67899999999999999999999999999999999999999999999999999999999988887654
No 32
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=1.6e-13 Score=75.65 Aligned_cols=61 Identities=30% Similarity=0.511 Sum_probs=56.4
Q ss_pred HHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecC
Q 035722 3 ADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63 (80)
Q Consensus 3 ~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~ 63 (80)
-.+|++||+|+.|-+++|..||+++||||+.|.+....--|+..|||..|.|+.|+|....
T Consensus 53 l~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 53 LCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred EEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 3479999999999999999999999999999999988888999999999999999998654
No 33
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=8.9e-13 Score=80.33 Aligned_cols=68 Identities=26% Similarity=0.421 Sum_probs=60.2
Q ss_pred CHHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCee-ecC--EEEEEEecCCCCCC
Q 035722 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKL-LDG--RVLFVDNVRPSRRY 68 (80)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~-~~~--~~i~v~~~~~~~~~ 68 (80)
.|+++|++||.|.+|-+++|+.++.++|||||.|.+.+++.+|+..|+... +.| .+|.|+++.....+
T Consensus 50 dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er 120 (510)
T KOG0144|consen 50 DLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERER 120 (510)
T ss_pred HHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhhhc
Confidence 378999999999999999999999999999999999999999999998754 555 67899988776654
No 34
>PLN03213 repressor of silencing 3; Provisional
Probab=99.39 E-value=1.8e-12 Score=80.48 Aligned_cols=60 Identities=20% Similarity=0.425 Sum_probs=54.6
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCH--HHHHHHHHhhCCeeecCEEEEEEecCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTE--EEAQKALTEMNGKLLDGRVLFVDNVRPS 65 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~--~~~~~a~~~l~~~~~~~~~i~v~~~~~~ 65 (80)
|+..|+.||.|..+.++ +.+| ||||||.|... ....+|+..|||..++|+.|+|..++|.
T Consensus 27 LravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~ 88 (759)
T PLN03213 27 LLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEH 88 (759)
T ss_pred HHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHH
Confidence 78899999999999998 4466 99999999987 6899999999999999999999988765
No 35
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.38 E-value=4.7e-12 Score=78.47 Aligned_cols=63 Identities=32% Similarity=0.504 Sum_probs=58.8
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~ 65 (80)
|+++|.+||.|..|.++.++.++.++|||||+|.+.++|..|+. +++..+.|+.|.|.++...
T Consensus 106 l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~~~ 168 (457)
T TIGR01622 106 LYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQAE 168 (457)
T ss_pred HHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecchh
Confidence 78999999999999999999899999999999999999999997 8999999999999886543
No 36
>smart00362 RRM_2 RNA recognition motif.
Probab=99.38 E-value=8.8e-12 Score=58.77 Aligned_cols=57 Identities=40% Similarity=0.687 Sum_probs=51.7
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEE
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~ 60 (80)
|+++|.+||++..+.+..++ +.++|+||++|.+.+.++.|+..+++..+.|+.+.|+
T Consensus 16 l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 16 LKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred HHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 68899999999999988776 6788999999999999999999999999999988763
No 37
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=4.6e-12 Score=69.43 Aligned_cols=61 Identities=23% Similarity=0.404 Sum_probs=55.2
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
|+..|..||++..+.|-.+| .|||||+|.++.+|+.|+..|+|..+.|..|+|+.+.-...
T Consensus 27 LE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 27 LERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred HHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 78999999999999886654 78999999999999999999999999999999999875544
No 38
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=6.4e-12 Score=76.86 Aligned_cols=63 Identities=32% Similarity=0.495 Sum_probs=57.1
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeec-CEEEEEEecCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLD-GRVLFVDNVRP 64 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~-~~~i~v~~~~~ 64 (80)
|.-+|++.|+|-++++++|+.+|.+||||||+|.+.+.|+.|++.||++.|. |+.|.|..+..
T Consensus 100 LvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sva 163 (506)
T KOG0117|consen 100 LVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVA 163 (506)
T ss_pred hHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeee
Confidence 6778999999999999999999999999999999999999999999999765 78888776543
No 39
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=4.5e-12 Score=79.21 Aligned_cols=68 Identities=32% Similarity=0.516 Sum_probs=61.7
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYNT 70 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~ 70 (80)
|+.+|+.||.+.++.+++.+ .|+.+|||||+|....+|..|++.+|++.|+|++|-|.||-++.....
T Consensus 134 Lk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ 201 (678)
T KOG0127|consen 134 LKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYED 201 (678)
T ss_pred HHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccc
Confidence 78899999999999999776 566669999999999999999999999999999999999998876544
No 40
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=2.5e-12 Score=78.42 Aligned_cols=67 Identities=30% Similarity=0.520 Sum_probs=60.3
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCee-ecC--EEEEEEecCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKL-LDG--RVLFVDNVRPSRRYN 69 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~-~~~--~~i~v~~~~~~~~~~ 69 (80)
++++|++||.|.+|.+.+|+ .+.+|||+||.|.+.+.|..|++.||+.. +.| .+|.|+|+.+.+.+.
T Consensus 141 vr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 141 VREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred HHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCch
Confidence 68999999999999999998 78999999999999999999999999964 555 789999998887653
No 41
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=2.2e-12 Score=77.65 Aligned_cols=61 Identities=34% Similarity=0.569 Sum_probs=58.3
Q ss_pred CHHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEe
Q 035722 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61 (80)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~ 61 (80)
.|+.-|.+||+|.++.+..|+-|++++||+||+|.-++.++-|++.+|+..++|+.|+|..
T Consensus 129 tiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 129 TIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred HHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 3788899999999999999999999999999999999999999999999999999999984
No 42
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.31 E-value=2e-11 Score=76.42 Aligned_cols=60 Identities=27% Similarity=0.363 Sum_probs=54.7
Q ss_pred CHHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCC
Q 035722 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65 (80)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~ 65 (80)
.|+++|++||.|..++++.++ +|||||+|.+.++|..|+..||+..+.|+.|.|.+++..
T Consensus 292 ~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 292 RLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred HHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 378999999999999998863 589999999999999999999999999999999988543
No 43
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.31 E-value=2.1e-11 Score=70.00 Aligned_cols=59 Identities=19% Similarity=0.231 Sum_probs=52.7
Q ss_pred CHHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecC
Q 035722 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63 (80)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~ 63 (80)
.|+++|+.||+|.+|.+++|. ..+++|||+|.+++.++.|+. |+|..|.++.|.|....
T Consensus 21 dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 21 DVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred HHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 388999999999999999884 445799999999999999996 99999999999998654
No 44
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.30 E-value=2.5e-11 Score=69.67 Aligned_cols=63 Identities=38% Similarity=0.729 Sum_probs=59.8
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~ 64 (80)
|+.+|.+||.+..+.+..++.++.++|||||.|.+.+++..|+..+++..+.|+.|.|.++.+
T Consensus 132 l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 132 LRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred HHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 789999999999999999988999999999999999999999999999999999999999653
No 45
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.30 E-value=8.6e-12 Score=77.63 Aligned_cols=67 Identities=34% Similarity=0.587 Sum_probs=61.5
Q ss_pred CHHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
+|+.+|.+||.|..|.+.+|..+|.++||+|++|.+.+++..|++.|||..+.|+.|+|........
T Consensus 294 ~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~ 360 (549)
T KOG0147|consen 294 MLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVD 360 (549)
T ss_pred HHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecc
Confidence 4788999999999999999999999999999999999999999999999999999999987654443
No 46
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.28 E-value=1.7e-11 Score=77.91 Aligned_cols=60 Identities=30% Similarity=0.445 Sum_probs=54.0
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeec-CEEEEEEec
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLD-GRVLFVDNV 62 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~-~~~i~v~~~ 62 (80)
|+++|++||.|.++++++| .++.++|||||+|.+.++|+.|++.||+..+. ++.|.|..+
T Consensus 75 L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 75 LVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred HHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 7899999999999999999 68999999999999999999999999998875 677666554
No 47
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=4.5e-11 Score=69.47 Aligned_cols=60 Identities=27% Similarity=0.508 Sum_probs=55.3
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
+++.|++||+|.+|++..+. ||+||.|.+.+.|.+||..+|+..+.|..+++.|-+....
T Consensus 181 mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 181 MRQTFSPFGPIQEVRVFKDQ------GYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred HHHhcccCCcceEEEEeccc------ceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCC
Confidence 78999999999999998874 7999999999999999999999999999999999876544
No 48
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.27 E-value=2e-11 Score=68.33 Aligned_cols=64 Identities=38% Similarity=0.491 Sum_probs=58.7
Q ss_pred HHHHhccC-CceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCC
Q 035722 2 IADAFSQF-GQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65 (80)
Q Consensus 2 l~~~f~~~-G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~ 65 (80)
+..+|.++ |.+...++-+++.||.++|||||+|.+.+.|.-|-+.||+..+.++.|.+.+..|.
T Consensus 66 ~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 66 ILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred HhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCch
Confidence 56778887 78888888899999999999999999999999999999999999999999988776
No 49
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.27 E-value=4.8e-11 Score=74.82 Aligned_cols=63 Identities=21% Similarity=0.351 Sum_probs=55.3
Q ss_pred HHHHhccCCceeEEEEeecC---CCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCC
Q 035722 2 IADAFSQFGQVTKATIIMDK---GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~---~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~ 64 (80)
|++.|.+||.|..|.++.+. .++...|++||+|.+.++|..|+..|||..+.|+.|.|.|...
T Consensus 436 l~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 436 VKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred HHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 67889999999999998752 3345679999999999999999999999999999999998753
No 50
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.26 E-value=1.4e-10 Score=54.79 Aligned_cols=59 Identities=46% Similarity=0.713 Sum_probs=53.1
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEe
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~ 61 (80)
|+++|..+|.+..+.+..++.+ ..+|++++.|.+.+.+..|+..+++..+.|+.+.|.+
T Consensus 16 i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 16 LRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred HHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 6789999999999999887744 6789999999999999999999999999999998864
No 51
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=5.5e-11 Score=72.44 Aligned_cols=63 Identities=30% Similarity=0.425 Sum_probs=58.6
Q ss_pred CHHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCC
Q 035722 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSR 66 (80)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~ 66 (80)
+|.+.|+++|++.++++.+|. + +-||||+.|.++.+|++|+..+|...+.|++|++.|+...+
T Consensus 14 ~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 14 MLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred HHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 478999999999999999998 6 99999999999999999999999999999999999986544
No 52
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=2.8e-11 Score=72.65 Aligned_cols=65 Identities=26% Similarity=0.473 Sum_probs=61.0
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSR 66 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~ 66 (80)
|+-+|+.||.|.+|.|++|..||.+..||||+|.+.+.++.|.-.|+...|+++.|+|.++.+-.
T Consensus 256 LeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQSVs 320 (479)
T KOG0415|consen 256 LEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQSVS 320 (479)
T ss_pred hhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhhhh
Confidence 67899999999999999999999999999999999999999999999999999999999886543
No 53
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.22 E-value=1.3e-10 Score=74.04 Aligned_cols=59 Identities=37% Similarity=0.657 Sum_probs=53.2
Q ss_pred CHHHHhccC--CceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 1 MIADAFSQF--GQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 1 ~l~~~f~~~--G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
.|+++|++| |.|..|.++ ++||||+|.+.++|..|++.||+..+.|+.|+|.+++|...
T Consensus 249 ~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 249 IIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred HHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCc
Confidence 378999999 999998764 35999999999999999999999999999999999988644
No 54
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.20 E-value=4.7e-11 Score=67.55 Aligned_cols=63 Identities=22% Similarity=0.352 Sum_probs=57.0
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
|+.+|++||.|..|.... +.+.+|-|||.|.+.+.|..|+..|+|..+.|+.+++.||+....
T Consensus 30 L~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sd 92 (221)
T KOG4206|consen 30 LYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSD 92 (221)
T ss_pred HHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCccc
Confidence 678999999999997754 578899999999999999999999999999999999999986643
No 55
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.18 E-value=2.5e-10 Score=71.60 Aligned_cols=60 Identities=20% Similarity=0.328 Sum_probs=52.6
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecC--EEEEEEecCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDG--RVLFVDNVRPS 65 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~--~~i~v~~~~~~ 65 (80)
|+++|++||.|.++.++.+.. .++|||+|.+.++|.+|++.|||..+.+ ..|+|.|+++.
T Consensus 113 L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~ 174 (481)
T TIGR01649 113 LYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPT 174 (481)
T ss_pred HHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCC
Confidence 789999999999999877642 3689999999999999999999999975 48899998764
No 56
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=2.6e-10 Score=69.56 Aligned_cols=65 Identities=35% Similarity=0.666 Sum_probs=58.7
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYN 69 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~ 69 (80)
|.++|+.||+|.+|++..+. +| ++|| ||+|.+++.|+.|+..+||..+.|+.|-|........+.
T Consensus 93 ~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~ 157 (369)
T KOG0123|consen 93 LYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEERE 157 (369)
T ss_pred HHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhc
Confidence 68899999999999999997 44 9999 999999999999999999999999999998877765544
No 57
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.15 E-value=1.2e-10 Score=68.26 Aligned_cols=56 Identities=25% Similarity=0.510 Sum_probs=52.8
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~ 65 (80)
|+.+|++||+|.+|.++++ ||||+..+...++.|++.|++.+|.|..|.|+-++.+
T Consensus 19 lr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 19 LRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred HHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 7899999999999999876 9999999999999999999999999999999988777
No 58
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=1.3e-10 Score=71.32 Aligned_cols=61 Identities=34% Similarity=0.547 Sum_probs=55.3
Q ss_pred CHHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCC
Q 035722 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYN 69 (80)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~ 69 (80)
+|++.|.+||.|..|+-++| ||||+|...++|-+|++.+|+..|+|..|+|.+++|..+..
T Consensus 275 ~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 275 TLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred HHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhc
Confidence 47899999999999976544 99999999999999999999999999999999999987644
No 59
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=9e-11 Score=73.57 Aligned_cols=69 Identities=33% Similarity=0.620 Sum_probs=63.9
Q ss_pred CHHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCC
Q 035722 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYN 69 (80)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~ 69 (80)
+|..+|+.+|+|..+.++.++.++.++||+||+|+-.+++++|+...++..+.|+.|+|..+..+....
T Consensus 21 qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~e 89 (678)
T KOG0127|consen 21 QLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRARSE 89 (678)
T ss_pred HHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccccccch
Confidence 578999999999999999999999999999999999999999999999999999999999998776543
No 60
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.13 E-value=3e-10 Score=71.91 Aligned_cols=66 Identities=27% Similarity=0.505 Sum_probs=60.6
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
|+.+|++||+|+..+|+.+..+.-.++|+||++++..+|.+||+.|+...+-|+.|.|+.++....
T Consensus 422 LKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKNEp~ 487 (940)
T KOG4661|consen 422 LKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKNEPG 487 (940)
T ss_pred HHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecccCcc
Confidence 789999999999999999977777889999999999999999999999999999999998875543
No 61
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.08 E-value=2e-10 Score=63.48 Aligned_cols=67 Identities=27% Similarity=0.482 Sum_probs=60.7
Q ss_pred CHHHHhccCCceeE-EEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 1 MIADAFSQFGQVTK-ATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 1 ~l~~~f~~~G~i~~-~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
+|.++|+.||.+.. .++++++.+|.++||+|+.|.+.+.+..|+..+|+..+.++++.|.++.....
T Consensus 112 ~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 112 LLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDT 179 (203)
T ss_pred HHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCC
Confidence 37889999998876 48899999999999999999999999999999999999999999999976554
No 62
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=4.9e-10 Score=65.38 Aligned_cols=66 Identities=27% Similarity=0.484 Sum_probs=58.1
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCee-ecC--EEEEEEecCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKL-LDG--RVLFVDNVRPSRRY 68 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~-~~~--~~i~v~~~~~~~~~ 68 (80)
++.+|.+||.+.+|.+.+.+ .|.++|++||.|.+..+++.||..|++.. +.| ..|.|+++...++|
T Consensus 36 vrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ADTdkER 104 (371)
T KOG0146|consen 36 VRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKER 104 (371)
T ss_pred HHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEeccchHHH
Confidence 57899999999999999988 78999999999999999999999999976 444 67999999776653
No 63
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.02 E-value=2.6e-10 Score=68.01 Aligned_cols=67 Identities=31% Similarity=0.502 Sum_probs=60.8
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYN 69 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~ 69 (80)
|+.+|.+||++.+|.+++|+.+++++||+|++|.+++.+..++.. ..+.++|+.|.+..+.|+....
T Consensus 23 Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av~r~~~~ 89 (311)
T KOG4205|consen 23 LREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAVSREDQT 89 (311)
T ss_pred HHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceeccCccccc
Confidence 789999999999999999999999999999999999999999874 6789999999999998886533
No 64
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.01 E-value=3.5e-09 Score=53.94 Aligned_cols=63 Identities=25% Similarity=0.388 Sum_probs=55.2
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
..++|++||.|..+++-..+ ..+|-|||.|.+..+|.+|+..|+|..+.++.+.|-|..+...
T Consensus 35 mydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~~ 97 (124)
T KOG0114|consen 35 MYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPEDA 97 (124)
T ss_pred HHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHHH
Confidence 36799999999999886544 4578999999999999999999999999999999998876654
No 65
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.97 E-value=1.7e-09 Score=63.56 Aligned_cols=61 Identities=23% Similarity=0.446 Sum_probs=55.5
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYNT 70 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~ 70 (80)
|++.|.+||++.+|.+++| |+||+|.-.+++..|++.|++..+.|++++|..+.++....+
T Consensus 95 lRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlrtap 155 (346)
T KOG0109|consen 95 LRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAP 155 (346)
T ss_pred HhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeeeeccccccCC
Confidence 7889999999999988776 999999999999999999999999999999999988765443
No 66
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.93 E-value=2.7e-09 Score=64.66 Aligned_cols=64 Identities=25% Similarity=0.406 Sum_probs=59.4
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~ 65 (80)
|+..|+-||+|..|.+-+++..+.++||+|++|.+......|+..+|-..++|.-++|..+..+
T Consensus 227 iKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 227 IKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred HHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCC
Confidence 6789999999999999999989999999999999999999999999999999999999987543
No 67
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.89 E-value=1.7e-09 Score=69.38 Aligned_cols=66 Identities=27% Similarity=0.500 Sum_probs=59.2
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
++.+|..||.+.+|+++.-...+.++|||||.|-++.++.+|+..|...-++|+.+.++|+.....
T Consensus 630 Vr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 630 VRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred HHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccchH
Confidence 688999999999999987755667899999999999999999999998889999999999986543
No 68
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.88 E-value=4.9e-09 Score=58.40 Aligned_cols=61 Identities=23% Similarity=0.339 Sum_probs=53.4
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~ 65 (80)
|+.+|.+||.|.+|.+...+ ....||||+|.++.+|+.|+..-++..++|..|+|+++...
T Consensus 23 ieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 23 IEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred HHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 78999999999999875443 34579999999999999999999999999999999998654
No 69
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.87 E-value=2.8e-08 Score=63.96 Aligned_cols=62 Identities=35% Similarity=0.497 Sum_probs=53.4
Q ss_pred HHHHhccCCceeEEEEeecCCCC---CeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKN---TSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~---~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~ 63 (80)
|...|.+.|.|.++.+...+... -+.|||||+|.+.++|+.|++.|+|..++|..|.|+++.
T Consensus 532 l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 532 LEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred HHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 56789999999999887654221 144999999999999999999999999999999999988
No 70
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.87 E-value=9.5e-09 Score=63.49 Aligned_cols=62 Identities=27% Similarity=0.473 Sum_probs=56.1
Q ss_pred HHHHhc-cCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCC
Q 035722 2 IADAFS-QFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64 (80)
Q Consensus 2 l~~~f~-~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~ 64 (80)
|++++. +.|+|..|.+..|. +++.+|++.|+|++++.+++|++.||.+.+.|++|.|+....
T Consensus 61 LKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 61 LKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred HHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 566775 57999999999998 899999999999999999999999999999999999986544
No 71
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.82 E-value=7.6e-09 Score=61.85 Aligned_cols=68 Identities=28% Similarity=0.487 Sum_probs=62.0
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYNT 70 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~ 70 (80)
++++|.+||.|..+.++.|..+.+++||+|+.|.+.+.++.++. ..-+.+.++.+.|..|.|+....+
T Consensus 114 ~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~~~~~ 181 (311)
T KOG4205|consen 114 FKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPKEVMQS 181 (311)
T ss_pred HhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccchhhccc
Confidence 68899999999999999999999999999999999999999998 578999999999999998876443
No 72
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.66 E-value=2.2e-07 Score=55.91 Aligned_cols=58 Identities=36% Similarity=0.531 Sum_probs=49.8
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHh-hCCeeecCEEEEEEecCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTE-MNGKLLDGRVLFVDNVRPS 65 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~-l~~~~~~~~~i~v~~~~~~ 65 (80)
|++.|.+||+|.++.++... ++|||+|.+...|+.|.+. ++...|+|.+|.|.|..+.
T Consensus 245 IrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~~ 303 (377)
T KOG0153|consen 245 IRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRPK 303 (377)
T ss_pred HHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCCc
Confidence 78899999999999886653 5999999999999998764 4556799999999999883
No 73
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.62 E-value=2.2e-07 Score=57.05 Aligned_cols=57 Identities=25% Similarity=0.414 Sum_probs=52.4
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~ 63 (80)
|..+|+-||+|..|++..++. .-|++.+.+...|+.|++.|+|+.+.|+.|+|.+++
T Consensus 315 LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 315 LFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred HHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 678899999999999988752 479999999999999999999999999999999986
No 74
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.62 E-value=1.5e-07 Score=54.39 Aligned_cols=63 Identities=27% Similarity=0.406 Sum_probs=57.1
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~ 65 (80)
+...|..||.+..+.++.|..++.++||+|+.|.+.+.+..++. +++..+.++.+.|.+..-.
T Consensus 118 ~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r~~ 180 (231)
T KOG4209|consen 118 IELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKRTN 180 (231)
T ss_pred hhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeeeee
Confidence 45678899999999999999898999999999999999999999 9999999999998876544
No 75
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.50 E-value=2.1e-07 Score=58.62 Aligned_cols=63 Identities=29% Similarity=0.428 Sum_probs=58.0
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~ 65 (80)
|+++|+..|+|..+.++.|+.++.++|.+|++|.+...+..|+. |.|..+.|.+|.|......
T Consensus 196 L~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~sEae 258 (549)
T KOG0147|consen 196 LEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLSEAE 258 (549)
T ss_pred HHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecccHHH
Confidence 78999999999999999999999999999999999999999996 8999999999998865433
No 76
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.47 E-value=5.6e-07 Score=58.91 Aligned_cols=58 Identities=17% Similarity=0.378 Sum_probs=52.5
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~ 65 (80)
|..+|+.||+|.+|.++.. +|+|||......+|++|+.+|+...+.++.|+|.|+...
T Consensus 438 L~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 438 LANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred HHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 7889999999999987554 579999999999999999999999999999999998644
No 77
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.46 E-value=1.2e-07 Score=55.01 Aligned_cols=65 Identities=35% Similarity=0.540 Sum_probs=55.0
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSR 66 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~ 66 (80)
|-..|.+|-.-...++++|..+++++||+||.|.++.+.-+|+..++|.-++.+.|..+-+..+.
T Consensus 207 l~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 207 LARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred HHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhHHh
Confidence 34567777666677889999999999999999999999999999999999999998877554443
No 78
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.43 E-value=1.4e-06 Score=50.68 Aligned_cols=64 Identities=25% Similarity=0.575 Sum_probs=57.5
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSR 66 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~ 66 (80)
|+++|..||.+..+.+-.++ .|.+.|.|-+.|...++|..|++.|++..++|+.+.+....+..
T Consensus 100 l~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~~ 163 (243)
T KOG0533|consen 100 LKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSPS 163 (243)
T ss_pred HHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCcc
Confidence 78999999988888888888 89999999999999999999999999999999999888765543
No 79
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=1.6e-06 Score=55.23 Aligned_cols=60 Identities=30% Similarity=0.515 Sum_probs=51.5
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecC-EEEEEEec
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDG-RVLFVDNV 62 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~-~~i~v~~~ 62 (80)
|..+|+++|++....++.++.+| .+||.|++|.+..+|+.|++.|||..++- ....|...
T Consensus 81 l~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~~f 141 (698)
T KOG2314|consen 81 LTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVRLF 141 (698)
T ss_pred HHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccceEEeehh
Confidence 56889999999999999888655 99999999999999999999999998774 55566543
No 80
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.32 E-value=2.4e-06 Score=51.74 Aligned_cols=62 Identities=31% Similarity=0.512 Sum_probs=48.5
Q ss_pred HHHhccCCceeEEEEeecC-CCCCeee-E-EEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCC
Q 035722 3 ADAFSQFGQVTKATIIMDK-GKNTSKG-Y-GSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64 (80)
Q Consensus 3 ~~~f~~~G~i~~~~~~~~~-~~~~~~g-~-~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~ 64 (80)
.++|++||+|..|.+.+.. ......+ + .|++|.+.++|.+|+...+|..++|+.|+..|...
T Consensus 138 ~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~lkatYGTT 202 (480)
T COG5175 138 HEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVLKATYGTT 202 (480)
T ss_pred hhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceEeeecCch
Confidence 4789999999999775442 1111222 2 39999999999999999999999999999987643
No 81
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.30 E-value=2.7e-06 Score=52.89 Aligned_cols=66 Identities=26% Similarity=0.436 Sum_probs=53.4
Q ss_pred CHHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
+|+++|.+||+|....+..-...++..+||||+|.+...++.++.. +...++++.+.|+.-.+...
T Consensus 304 ~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~~~ 369 (419)
T KOG0116|consen 304 ELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPGFR 369 (419)
T ss_pred HHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccccc
Confidence 4789999999999877654432455559999999999999999996 67789999999998776543
No 82
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.26 E-value=1.6e-06 Score=53.97 Aligned_cols=57 Identities=40% Similarity=0.582 Sum_probs=49.4
Q ss_pred CHHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEec
Q 035722 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV 62 (80)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~ 62 (80)
+|++-|..||.+....++. +++++| .|.|.++++|++||..+++..++|+.|.|.|.
T Consensus 552 mlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 552 MLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred HHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 4788899999999887733 567776 89999999999999999999999999999873
No 83
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.17 E-value=1.4e-06 Score=55.00 Aligned_cols=67 Identities=18% Similarity=0.371 Sum_probs=60.5
Q ss_pred CHHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
++.+.+..||++....++.|..+|-++||+|.+|.++.....|+..|||..+.++.+.|..+.+...
T Consensus 305 q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~ 371 (500)
T KOG0120|consen 305 QVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGAS 371 (500)
T ss_pred HHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccch
Confidence 3567888999999999999988899999999999999999999999999999999999998876543
No 84
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.09 E-value=3.6e-05 Score=39.07 Aligned_cols=55 Identities=22% Similarity=0.278 Sum_probs=47.6
Q ss_pred CCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeec----CEEEEEEecC
Q 035722 9 FGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLD----GRVLFVDNVR 63 (80)
Q Consensus 9 ~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~----~~~i~v~~~~ 63 (80)
.|....+-++.|..++-..|||||.|.+++.+.+-...++|..+. .+.+.|.||.
T Consensus 27 ~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~yAr 85 (97)
T PF04059_consen 27 KGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEISYAR 85 (97)
T ss_pred cCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEEehhH
Confidence 477888999999888999999999999999999999999998876 4667777764
No 85
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.07 E-value=3.3e-05 Score=49.06 Aligned_cols=63 Identities=21% Similarity=0.353 Sum_probs=51.9
Q ss_pred HHHHhccCCceeEEEEeecCCCCC---eeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNT---SKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~---~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~ 64 (80)
++.-+++||.|..|.++++-.... ..|-.||+|.+.+++++|.+.|+|.++.|+.+...|...
T Consensus 426 vr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 426 VRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 456788999999999988722222 235679999999999999999999999999999988654
No 86
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.04 E-value=1.5e-06 Score=54.96 Aligned_cols=52 Identities=19% Similarity=0.395 Sum_probs=46.7
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEE
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLF 58 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~ 58 (80)
|+.+|+.||+|.+++. +...+|..||+|.+..+|++|++.|++..+.|+.|.
T Consensus 92 L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 92 LLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred HHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 7889999999999765 445678999999999999999999999999998877
No 87
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.04 E-value=5.7e-06 Score=47.45 Aligned_cols=59 Identities=25% Similarity=0.210 Sum_probs=51.2
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEec
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV 62 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~ 62 (80)
|.++|-+.|+|..+.+..++ .+..+ ||||.|.++..+.-|++.+||..+.+..+.+..-
T Consensus 26 L~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 26 LSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred HHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 67889999999999988776 45556 9999999999999999999999999988777643
No 88
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.04 E-value=1.1e-05 Score=52.87 Aligned_cols=64 Identities=20% Similarity=0.393 Sum_probs=54.8
Q ss_pred HHHHhccCCceeEEEEeecC---CCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCC
Q 035722 2 IADAFSQFGQVTKATIIMDK---GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~---~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~ 65 (80)
|-..|+.||++..++++..+ .....+.++||.|-+..++++|+..|+|..+.+..+++.|+++-
T Consensus 191 ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWgk~V 257 (877)
T KOG0151|consen 191 LLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWGKAV 257 (877)
T ss_pred HHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeecccccc
Confidence 56789999999999998664 23444578999999999999999999999999999999998544
No 89
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.02 E-value=6.4e-05 Score=45.67 Aligned_cols=61 Identities=28% Similarity=0.482 Sum_probs=50.4
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSR 66 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~ 66 (80)
|.+-..+||.+..+.|.-. .+.|.+.|.|.+.++|..||+.|+|..++|+.|..+....+.
T Consensus 293 l~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 293 LTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred HHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcc
Confidence 3455678999999977432 356789999999999999999999999999999998765543
No 90
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.98 E-value=3.5e-05 Score=38.07 Aligned_cols=55 Identities=22% Similarity=0.293 Sum_probs=36.5
Q ss_pred HHHHhccC-CceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCC
Q 035722 2 IADAFSQF-GQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSR 66 (80)
Q Consensus 2 l~~~f~~~-G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~ 66 (80)
|++++.-+ |.+.++. .+-|++.|.+.+.|.+|...+++..+.|..|.|++..-..
T Consensus 23 L~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~r 78 (90)
T PF11608_consen 23 LRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKNR 78 (90)
T ss_dssp HHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S-
T ss_pred HHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCcc
Confidence 56666665 5676662 2479999999999999999999999999999999875433
No 91
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.94 E-value=1.4e-05 Score=45.78 Aligned_cols=55 Identities=29% Similarity=0.597 Sum_probs=49.0
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~ 64 (80)
|+.+|..||.+..+.+. .||+||.|.+..+|..|+..+|+..+.+-.+.++++..
T Consensus 18 ~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 18 VERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred HHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 67899999999998763 35899999999999999999999999998899999875
No 92
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.90 E-value=5.2e-05 Score=46.05 Aligned_cols=64 Identities=19% Similarity=0.310 Sum_probs=54.8
Q ss_pred HHHHhccCCceeE--------EEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCC
Q 035722 2 IADAFSQFGQVTK--------ATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSR 66 (80)
Q Consensus 2 l~~~f~~~G~i~~--------~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~ 66 (80)
+.++|+++|-|.. |++.++. .|..+|=|++.|...+.++-|+..|++..+.|..|+|+.|+-..
T Consensus 151 ~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVerAkfq~ 222 (382)
T KOG1548|consen 151 FAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRGKKLRVERAKFQM 222 (382)
T ss_pred HHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccCcEEEEehhhhhh
Confidence 3567888887753 6777777 59999999999999999999999999999999999999887543
No 93
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.85 E-value=0.00029 Score=40.82 Aligned_cols=66 Identities=23% Similarity=0.384 Sum_probs=46.5
Q ss_pred HHHHhccCCceeEEEEe-ecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeec---CEEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATII-MDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLD---GRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~-~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~---~~~i~v~~~~~~~~ 67 (80)
|+.+|..|---..+.+. .++.....+-+||++|.+...|..|+..|||..++ +..|+++++++..+
T Consensus 51 iynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElAKSNtK 120 (284)
T KOG1457|consen 51 IYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELAKSNTK 120 (284)
T ss_pred HHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeeehhcCcc
Confidence 56677765323333332 22222334569999999999999999999999987 58899999876544
No 94
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.83 E-value=0.00018 Score=36.77 Aligned_cols=62 Identities=23% Similarity=0.415 Sum_probs=41.9
Q ss_pred HHHHhccCCceeEEE-EeecC------CCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEE-EEEEecCC
Q 035722 2 IADAFSQFGQVTKAT-IIMDK------GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRV-LFVDNVRP 64 (80)
Q Consensus 2 l~~~f~~~G~i~~~~-~~~~~------~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~-i~v~~~~~ 64 (80)
+.+.|++||.|.+.. +..+. .......+-.++|.++.+|.+||. .||..+.|.. +-|.++++
T Consensus 22 Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~mvGV~~~~~ 91 (100)
T PF05172_consen 22 VLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLMVGVKPCDP 91 (100)
T ss_dssp HHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEEEEEEE-HH
T ss_pred HHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEEEEEEEcHH
Confidence 567899999998764 11110 011223589999999999999999 5999999854 45777643
No 95
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.82 E-value=0.00028 Score=38.28 Aligned_cols=55 Identities=29% Similarity=0.462 Sum_probs=43.2
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~ 65 (80)
|-+.|..||.+.-++++-+ --+|+|.+...|-+|+. ++|..+.|+.|.|+...|.
T Consensus 53 ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 53 LLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred HHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 4567889999888877554 36799999999999998 7999999999999976554
No 96
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.64 E-value=0.00039 Score=42.97 Aligned_cols=59 Identities=22% Similarity=0.316 Sum_probs=51.8
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~ 65 (80)
|..+|-.||.|..++.++.+ .|-|.|++-+...+++|+..||+..+-|..|.|..++..
T Consensus 305 lFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 305 LFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQN 363 (494)
T ss_pred hhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEeecccc
Confidence 56788899999999988764 467999999999999999999999999999999887644
No 97
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.60 E-value=2.2e-05 Score=45.76 Aligned_cols=61 Identities=20% Similarity=0.383 Sum_probs=49.8
Q ss_pred HHhc-cCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCC
Q 035722 4 DAFS-QFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65 (80)
Q Consensus 4 ~~f~-~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~ 65 (80)
..|+ +||+|.++.+-.+ ......|-.+|.|...++|+.|+..||+..+.|++|...++.-.
T Consensus 87 ~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 87 TELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 4455 8999999865433 35567788999999999999999999999999999999876533
No 98
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.58 E-value=0.00021 Score=32.36 Aligned_cols=37 Identities=22% Similarity=0.512 Sum_probs=30.2
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHH
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKAL 44 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~ 44 (80)
+...|..||+|..+.+. ....+.++.|.+..++++|+
T Consensus 17 vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 17 VLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred HHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 46789999999998874 22348999999999999884
No 99
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.52 E-value=4.6e-05 Score=45.52 Aligned_cols=66 Identities=24% Similarity=0.446 Sum_probs=58.5
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRY 68 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 68 (80)
|+..|..+|.|..+++..++.++..+||+++.|........++.. +...+.++++.+.+..+....
T Consensus 202 ~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 202 LKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred HhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCccc
Confidence 345788899999999999999999999999999999999999886 788899999999998887654
No 100
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.41 E-value=0.0013 Score=40.81 Aligned_cols=61 Identities=23% Similarity=0.325 Sum_probs=50.2
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecC--EEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDG--RVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~--~~i~v~~~~~~~~ 67 (80)
|+++....|+|..|.+++. ++. -|.|+|.+.+.|++|-..|||..|+. =.|+|+|++|.+-
T Consensus 139 ly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 139 LYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred hhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHHHhhcccccccccceeEEEEecCccee
Confidence 5677778899999988765 333 68999999999999999999998775 5789999988753
No 101
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.33 E-value=0.00018 Score=43.83 Aligned_cols=65 Identities=28% Similarity=0.339 Sum_probs=55.4
Q ss_pred HHHHhccCCcee--------EEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCC
Q 035722 2 IADAFSQFGQVT--------KATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSR 66 (80)
Q Consensus 2 l~~~f~~~G~i~--------~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~ 66 (80)
|.++|.++|.|. .+.+-+++.|+..+|-|.|+|.+...|+.|+.-+++..+.+..|.|..+....
T Consensus 83 ~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 83 NADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTIKVSLAERRT 155 (351)
T ss_pred HHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCCchhhhhhhcc
Confidence 567788887764 35577888899999999999999999999999999999999999988876554
No 102
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.29 E-value=0.0014 Score=41.67 Aligned_cols=60 Identities=25% Similarity=0.356 Sum_probs=47.5
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~ 65 (80)
|.++|+-++ |.++ +..+.+|+..|-|||+|.+.++++.|++ .+...+..+-|+|.-+.+.
T Consensus 27 i~~Ff~~~~-I~~~--~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 27 ILDFFSNCG-IENL--EIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGA 86 (510)
T ss_pred HHHHHhcCc-eeEE--EEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCc
Confidence 566777665 5554 3445579999999999999999999999 4788889999999877544
No 103
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.17 E-value=0.00075 Score=42.11 Aligned_cols=56 Identities=25% Similarity=0.396 Sum_probs=42.9
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeE-EEEEECCHHHHHHHHHhhCCeeecCE--EEEEEec
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGY-GSVTFSTEEEAQKALTEMNGKLLDGR--VLFVDNV 62 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~-~~v~f~~~~~~~~a~~~l~~~~~~~~--~i~v~~~ 62 (80)
|.++|++||.|..+.-.. +..|| |++.|.+.+.|+.|-..|+|..|++- .|+|.++
T Consensus 167 LHqvFS~fG~VlKIiTF~-----Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~S 225 (492)
T KOG1190|consen 167 LHQVFSKFGFVLKIITFT-----KNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFS 225 (492)
T ss_pred HHHHHhhcceeEEEEEEe-----cccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehh
Confidence 688999999998874322 23445 89999999999999999999988763 3444444
No 104
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.13 E-value=0.002 Score=33.17 Aligned_cols=43 Identities=42% Similarity=0.551 Sum_probs=27.3
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCe
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGK 50 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~ 50 (80)
|+..|.+||+|..|.+.... .-|+|.|.+++.|+.|+..+...
T Consensus 18 iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 18 IKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp HHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHT
T ss_pred HHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhc
Confidence 68899999999998775542 27999999999999998866433
No 105
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.07 E-value=0.00035 Score=40.19 Aligned_cols=54 Identities=33% Similarity=0.586 Sum_probs=44.3
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~ 63 (80)
|...|.++|.+..... ..+++|+.|....++..|+..+++..+.++.|.+....
T Consensus 116 l~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~~ 169 (216)
T KOG0106|consen 116 LKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKNS 169 (216)
T ss_pred HhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeecccC
Confidence 5677888888743322 45699999999999999999999999999999995543
No 106
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=97.04 E-value=0.00023 Score=43.01 Aligned_cols=62 Identities=23% Similarity=0.381 Sum_probs=48.5
Q ss_pred HHhccCCceeEEEEeecCC--CCCe-eeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCC
Q 035722 4 DAFSQFGQVTKATIIMDKG--KNTS-KGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65 (80)
Q Consensus 4 ~~f~~~G~i~~~~~~~~~~--~~~~-~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~ 65 (80)
.+|++||.|..+.+..++. ++.. -.-++++|...+++.+||..++|...+|+.++..+...+
T Consensus 99 eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~~gttk 163 (327)
T KOG2068|consen 99 EYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKASLGTTK 163 (327)
T ss_pred ccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHhhCCCc
Confidence 5789999999998887762 1111 123799999999999999999999999988777766544
No 107
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=97.04 E-value=0.00043 Score=43.75 Aligned_cols=58 Identities=28% Similarity=0.389 Sum_probs=48.5
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSR 66 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~ 66 (80)
|...|++||.|..|.+-.. ..-|.|+|.+..++..|.. .++..++++.|+|.|-.+..
T Consensus 390 ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 390 LNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEecCCc
Confidence 5678999999999987443 2368999999999988876 58999999999999998854
No 108
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.85 E-value=0.0083 Score=36.26 Aligned_cols=60 Identities=23% Similarity=0.328 Sum_probs=49.3
Q ss_pred HHHhccCCceeEEEEeecCCCCCeee-EEEEEECCHHHHHHHHHhhCCeeecCEEEEEEec
Q 035722 3 ADAFSQFGQVTKATIIMDKGKNTSKG-YGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV 62 (80)
Q Consensus 3 ~~~f~~~G~i~~~~~~~~~~~~~~~g-~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~ 62 (80)
....++||.|..|.+..++....... --||+|...+.+-+|+--|||.-+.|+.+...+-
T Consensus 304 keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 304 KEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 45678999999998888775555443 4689999999999999999999999999877654
No 109
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.74 E-value=0.0048 Score=39.35 Aligned_cols=60 Identities=23% Similarity=0.294 Sum_probs=45.7
Q ss_pred HHHHhccCCcee-EEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecC
Q 035722 2 IADAFSQFGQVT-KATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63 (80)
Q Consensus 2 l~~~f~~~G~i~-~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~ 63 (80)
|.++|+..--+. .+.++.++ .+++.|-|||+|.+.+.++.|+.. |...|..+-|+|..+.
T Consensus 120 I~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 120 IVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSS 180 (510)
T ss_pred HHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehhH
Confidence 566776543333 35566666 567889999999999999999984 7788999999888553
No 110
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.68 E-value=0.0062 Score=36.83 Aligned_cols=55 Identities=31% Similarity=0.509 Sum_probs=42.3
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEE-EEEEecC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRV-LFVDNVR 63 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~-i~v~~~~ 63 (80)
+...|++||.|+..... ....|-++.|.+..++++||. .||..|+|.. |-|..+.
T Consensus 213 vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 213 VLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred HHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecC
Confidence 56789999999887543 223488999999999999998 5999999854 4555543
No 111
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=96.37 E-value=0.016 Score=33.52 Aligned_cols=57 Identities=19% Similarity=0.349 Sum_probs=45.5
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeec-CEEEEEEecC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLD-GRVLFVDNVR 63 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~-~~~i~v~~~~ 63 (80)
|..+|.+|.--.+++++... .+.+||+|.+...+..|...+++..+. ...+.|.+++
T Consensus 163 l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 163 LSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 66788888888888776543 468999999999999999999998877 6677776653
No 112
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.12 E-value=0.027 Score=30.73 Aligned_cols=52 Identities=19% Similarity=0.279 Sum_probs=40.2
Q ss_pred HHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecC
Q 035722 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63 (80)
Q Consensus 4 ~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~ 63 (80)
.-++.||+|.++.+. .+.-|.|.|.+...|-.|+..++. ...|..+.+.|-.
T Consensus 109 ~~Ls~fGpI~SVT~c-------GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWqq 160 (166)
T PF15023_consen 109 QRLSVFGPIQSVTLC-------GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQQ 160 (166)
T ss_pred HHHHhcCCcceeeec-------CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeeccc
Confidence 456789999998652 233699999999999999998754 6677788887754
No 113
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.12 E-value=0.041 Score=31.15 Aligned_cols=59 Identities=22% Similarity=0.291 Sum_probs=42.0
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhC--CeeecCEEEEEEecCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMN--GKLLDGRVLFVDNVRPSR 66 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~--~~~~~~~~i~v~~~~~~~ 66 (80)
|+++|..++.+........- +-..+.|.+.+.|..|...|+ +..+.|..+++-++.+..
T Consensus 12 l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 12 LEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp HHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred HHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 67899999988887665442 246799999999999999988 899999999999885544
No 114
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.99 E-value=0.034 Score=37.36 Aligned_cols=60 Identities=22% Similarity=0.382 Sum_probs=45.5
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEe
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~ 61 (80)
|-++|.-|-.+-.--..+-...|...|-|.|.|.+.++|.+|...|++..|..+.+.+..
T Consensus 884 I~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 884 IVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred HHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 345666665443322333344788899999999999999999999999999999887753
No 115
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.93 E-value=0.0073 Score=41.10 Aligned_cols=60 Identities=27% Similarity=0.440 Sum_probs=49.7
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecC--EEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDG--RVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~--~~i~v~~~~~~~~ 67 (80)
|...|..||.|..|.+- +..-|+++.|.+...++.|++.+.+..+++ +.++|.++.+.-+
T Consensus 472 l~r~fd~fGpir~Idy~------hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 472 LNREFDRFGPIRIIDYR------HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPGA 533 (975)
T ss_pred HHHHhhccCcceeeecc------cCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCCCC
Confidence 67889999999998652 233499999999999999999999999886 6788888876544
No 116
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.34 E-value=0.0044 Score=36.58 Aligned_cols=55 Identities=18% Similarity=0.337 Sum_probs=42.6
Q ss_pred HHHHhccCCceeEEEEeecCCC--------CCee----eEEEEEECCHHHHHHHHHhhCCeeecCEE
Q 035722 2 IADAFSQFGQVTKATIIMDKGK--------NTSK----GYGSVTFSTEEEAQKALTEMNGKLLDGRV 56 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~--------~~~~----g~~~v~f~~~~~~~~a~~~l~~~~~~~~~ 56 (80)
|+++|+.||.|-.|.+-....+ +... .-|.|+|.+...|..+...||+.+|+|+.
T Consensus 91 lReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Iggkk 157 (278)
T KOG3152|consen 91 LREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIGGKK 157 (278)
T ss_pred HHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccCCCC
Confidence 7899999999999877554333 2222 13678999999999999999999999864
No 117
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=94.97 E-value=0.012 Score=37.13 Aligned_cols=50 Identities=20% Similarity=0.252 Sum_probs=38.3
Q ss_pred HHHHhccCCceeEEEEeec---CCCCC--e--------eeEEEEEECCHHHHHHHHHhhCCee
Q 035722 2 IADAFSQFGQVTKATIIMD---KGKNT--S--------KGYGSVTFSTEEEAQKALTEMNGKL 51 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~---~~~~~--~--------~g~~~v~f~~~~~~~~a~~~l~~~~ 51 (80)
|.++|+.+|.|..|++... +.+.. . +-+|+|+|...+.|.+|-+.++...
T Consensus 248 l~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e~ 310 (484)
T KOG1855|consen 248 LSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPEQ 310 (484)
T ss_pred HHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchhh
Confidence 6789999999999998665 32222 1 3478999999999999999775544
No 118
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.73 E-value=0.16 Score=24.37 Aligned_cols=33 Identities=30% Similarity=0.503 Sum_probs=19.9
Q ss_pred EEEEEECCHHHHHHHHHhhCCeeecCEEEEEEec
Q 035722 29 YGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV 62 (80)
Q Consensus 29 ~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~ 62 (80)
|+|++... +.++.++..+++..+.|+.+.|+.|
T Consensus 42 ~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 42 FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp -EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 88888865 4788899999999999999999864
No 119
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=94.59 E-value=0.026 Score=35.04 Aligned_cols=46 Identities=15% Similarity=0.379 Sum_probs=39.9
Q ss_pred ceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEE
Q 035722 11 QVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRV 56 (80)
Q Consensus 11 ~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~ 56 (80)
.+.+++++.++.+|.++|||++...+...+...++.|....|-|..
T Consensus 108 ~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~ 153 (498)
T KOG4849|consen 108 QFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS 153 (498)
T ss_pred HHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCC
Confidence 4567777888999999999999999999999999999888888854
No 120
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=94.22 E-value=0.061 Score=33.85 Aligned_cols=59 Identities=17% Similarity=0.296 Sum_probs=44.7
Q ss_pred HHhccCC-ceeE--EEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecC
Q 035722 4 DAFSQFG-QVTK--ATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63 (80)
Q Consensus 4 ~~f~~~G-~i~~--~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~ 63 (80)
++|..|. .|.. +.++.+. .|+..|-||+++.+.+.+..|....+.+....+-|+|.-+.
T Consensus 299 ~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 299 DFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred HHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 3444443 2333 6666665 68888999999999999999999888777778888887654
No 121
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.05 E-value=0.19 Score=23.78 Aligned_cols=30 Identities=17% Similarity=0.260 Sum_probs=26.0
Q ss_pred EEEEECCHHHHHHHHHhhCCeeecCEEEEE
Q 035722 30 GSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59 (80)
Q Consensus 30 ~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v 59 (80)
-|+.|.+..+|++|....++..+.+..+.+
T Consensus 36 fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 36 FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 479999999999999999998888777654
No 122
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=93.32 E-value=0.037 Score=37.64 Aligned_cols=63 Identities=19% Similarity=0.232 Sum_probs=51.9
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~ 65 (80)
|+.++..+|.+.+..++..+ .|+++|-+++.|.++.++.++....+...+.-..+.|..+.|.
T Consensus 753 ~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~ 815 (881)
T KOG0128|consen 753 LKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPE 815 (881)
T ss_pred HHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCc
Confidence 56788889999998888777 7999999999999999999988877777777677777765553
No 123
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.18 E-value=0.65 Score=24.21 Aligned_cols=43 Identities=23% Similarity=0.357 Sum_probs=34.2
Q ss_pred CceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecC
Q 035722 10 GQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDG 54 (80)
Q Consensus 10 G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~ 54 (80)
..|..+++++|. ...+-.+++.|.+...|..-...+||..++.
T Consensus 39 ~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 39 EDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 346678888874 2355678999999999999999999988664
No 124
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=92.90 E-value=0.49 Score=31.05 Aligned_cols=55 Identities=16% Similarity=0.262 Sum_probs=43.7
Q ss_pred CCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeec----CEEEEEEecC
Q 035722 9 FGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLD----GRVLFVDNVR 63 (80)
Q Consensus 9 ~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~----~~~i~v~~~~ 63 (80)
.|.=.++.++.|-.+.-.-|||||.|-+++.+-...+.+||..+. .+...+.|+.
T Consensus 413 ~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYAr 471 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYAR 471 (549)
T ss_pred cCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhh
Confidence 466667788888767778899999999999999999999998754 2555666664
No 125
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=92.75 E-value=0.66 Score=23.14 Aligned_cols=40 Identities=25% Similarity=0.412 Sum_probs=30.9
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNG 49 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~ 49 (80)
|.++|+.||.|. |..+.|. -|||.....+.+..++..+..
T Consensus 25 I~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 25 IYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp HHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred HHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 678999999864 4344443 699999999999998887754
No 126
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=92.71 E-value=0.53 Score=22.02 Aligned_cols=39 Identities=31% Similarity=0.393 Sum_probs=28.8
Q ss_pred HHHHhccC---CceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhh
Q 035722 2 IADAFSQF---GQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEM 47 (80)
Q Consensus 2 l~~~f~~~---G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l 47 (80)
++.+|..| .....+..+-|. -|-+.|.+...|.+|+..|
T Consensus 21 I~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 21 IKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred HHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 45667666 235677777775 5779999999999998753
No 127
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=91.37 E-value=0.41 Score=30.40 Aligned_cols=61 Identities=11% Similarity=0.157 Sum_probs=41.8
Q ss_pred CHHHHhccCCceeEEEEeecCCC---CCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEE-EEEec
Q 035722 1 MIADAFSQFGQVTKATIIMDKGK---NTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVL-FVDNV 62 (80)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~---~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i-~v~~~ 62 (80)
+++.+|+-.|+|..+.++-+... ....--|||-|.+...+..|.. |....+-+..| .+-|.
T Consensus 23 qm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 23 QMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPYG 87 (479)
T ss_pred HHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEecC
Confidence 46789999999999987654322 2234589999999988888877 55555555444 44443
No 128
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=89.72 E-value=0.13 Score=34.05 Aligned_cols=57 Identities=21% Similarity=0.240 Sum_probs=40.0
Q ss_pred CHHHHhcc-CCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeec---CEEEEEEecC
Q 035722 1 MIADAFSQ-FGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLD---GRVLFVDNVR 63 (80)
Q Consensus 1 ~l~~~f~~-~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~---~~~i~v~~~~ 63 (80)
+|+.+++. .|.|.+..| .+.+..|||.|.+.++|-.....||+..|. ++.|.+.|..
T Consensus 460 QLkelL~rtgg~Vee~Wm------DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~ 520 (718)
T KOG2416|consen 460 QLKELLGRTGGNVEEFWM------DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVR 520 (718)
T ss_pred HHHHHHhhccCchHHHHH------HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecc
Confidence 46667764 445544422 234568999999999999999999998754 4667777654
No 129
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=89.18 E-value=0.72 Score=22.05 Aligned_cols=59 Identities=17% Similarity=0.264 Sum_probs=40.8
Q ss_pred CHHHHhccCC-ceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEec
Q 035722 1 MIADAFSQFG-QVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV 62 (80)
Q Consensus 1 ~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~ 62 (80)
++.+-|...| ++.++..+..+.++.+-.+-+|+.....+... .|+-..+.++.+.|+..
T Consensus 3 ~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~ 62 (69)
T smart00596 3 QIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERP 62 (69)
T ss_pred HHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecC
Confidence 4667777877 67788888877666666777888775543333 35556788888888853
No 130
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=88.94 E-value=0.056 Score=36.85 Aligned_cols=52 Identities=21% Similarity=0.351 Sum_probs=38.3
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeec
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLD 53 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~ 53 (80)
|...|..+|.+..+.+.-....++.+|.||+.|..++.+..|+...+.+.+.
T Consensus 684 l~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 684 LSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred hhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 4456777777776665544557889999999999999999999855444433
No 131
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=87.55 E-value=1.7 Score=28.50 Aligned_cols=45 Identities=33% Similarity=0.385 Sum_probs=39.5
Q ss_pred HHHHhc-cCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHh
Q 035722 2 IADAFS-QFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTE 46 (80)
Q Consensus 2 l~~~f~-~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~ 46 (80)
|-.+|. -||-|+-+.+-.|++-+.++|-|-|+|.+....-+||..
T Consensus 387 LA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 387 LAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred HHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 456676 599999999999988899999999999999999999874
No 132
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=87.36 E-value=0.21 Score=32.01 Aligned_cols=45 Identities=27% Similarity=0.469 Sum_probs=38.4
Q ss_pred eeEEEEEECCHHHHHHHHHhhCCee-ecCEEEEEEecCCCCCCCCC
Q 035722 27 KGYGSVTFSTEEEAQKALTEMNGKL-LDGRVLFVDNVRPSRRYNTD 71 (80)
Q Consensus 27 ~g~~~v~f~~~~~~~~a~~~l~~~~-~~~~~i~v~~~~~~~~~~~~ 71 (80)
-||+|+.+.+...+.+|++.+++.. +.|+++.+.++-++..+.+.
T Consensus 37 ~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqrsrk 82 (584)
T KOG2193|consen 37 SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQRSRK 82 (584)
T ss_pred cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHHhhh
Confidence 4799999999999999999998864 88999999998887665443
No 133
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=87.19 E-value=0.5 Score=32.75 Aligned_cols=60 Identities=28% Similarity=0.309 Sum_probs=47.9
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCee--ecCEEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKL--LDGRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~--~~~~~i~v~~~~~~~~ 67 (80)
|..++..||.+.+....++- ..+.|.|.+.+.+-.|+..++|.. .-|.+.+|.++++-+-
T Consensus 315 L~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~ 376 (1007)
T KOG4574|consen 315 LATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPM 376 (1007)
T ss_pred HHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccccc
Confidence 56788999999998776653 378999999999999999999876 4467788888876543
No 134
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=86.89 E-value=2.3 Score=24.52 Aligned_cols=45 Identities=20% Similarity=0.356 Sum_probs=37.3
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeec
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLD 53 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~ 53 (80)
|+....+-|.++...+.+|- .+.|.|-..++.+-|+..|+...+.
T Consensus 132 LKDHmReaGdvCfadv~rDg-------~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 132 LKDHMREAGDVCFADVQRDG-------VGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred HHHHHHhhCCeeeeeeeccc-------ceeeeeeehhhHHHHHHhhcccccc
Confidence 56677788999998887763 7899999999999999999876644
No 135
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=85.33 E-value=2.6 Score=25.02 Aligned_cols=48 Identities=19% Similarity=0.298 Sum_probs=32.6
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeec
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLD 53 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~ 53 (80)
|+.+|+.|.-.-..++ +.+ +| -..+|+.|.+.+.+..|+..|+|..+.
T Consensus 227 l~~~~~~~~gf~~l~~-~~~-~g--~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 227 LKQLLSRYPGFHILKI-RAR-GG--MPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred HHHHHHhCCCceEEEE-ecC-CC--cceEeecHHHHHHHHHHHHHhhcceec
Confidence 6778887754333333 221 22 237899999999999999999886653
No 136
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=83.18 E-value=0.73 Score=31.47 Aligned_cols=58 Identities=14% Similarity=0.096 Sum_probs=42.1
Q ss_pred HHhccCCceeE-EEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEec
Q 035722 4 DAFSQFGQVTK-ATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV 62 (80)
Q Consensus 4 ~~f~~~G~i~~-~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~ 62 (80)
.+|..-..|++ |.+-..+ +++.++-|||.|..+++...|...-+.+-+..+.|+|.-.
T Consensus 453 ~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 453 NKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred hhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 45555444554 6666666 7888899999999988888887655566677788888743
No 137
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=83.12 E-value=3.3 Score=19.62 Aligned_cols=59 Identities=15% Similarity=0.159 Sum_probs=38.7
Q ss_pred HHHHhccCC-ceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecC
Q 035722 2 IADAFSQFG-QVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63 (80)
Q Consensus 2 l~~~f~~~G-~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~ 63 (80)
+.+.|...| ++.++..+..+.+...-..-|+++....+.. +.|+-..+.+..+.|+...
T Consensus 4 I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k---~i~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 4 IKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNK---EIYKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccc---ceeehHhhCCeEEEEecCC
Confidence 455666666 6777877777756666677888887654422 2355566778888888543
No 138
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=82.98 E-value=1.5 Score=26.39 Aligned_cols=47 Identities=26% Similarity=0.461 Sum_probs=36.5
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNG 49 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~ 49 (80)
|.+-|..||+|..-.+..|. .++..+-++|.|.+...+..|...++.
T Consensus 48 l~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 48 LEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred HHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhcc
Confidence 56778999999876665554 567777889999998888888876643
No 139
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=82.59 E-value=4.6 Score=25.93 Aligned_cols=55 Identities=22% Similarity=0.299 Sum_probs=36.6
Q ss_pred HHHHhcc----CCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEE
Q 035722 2 IADAFSQ----FGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLF 58 (80)
Q Consensus 2 l~~~f~~----~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~ 58 (80)
+.++|.+ -|....+..+..+ +|+..|=||+.|..+++++.|+.+ |...++-+-|+
T Consensus 178 Vv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIE 236 (508)
T KOG1365|consen 178 VVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIE 236 (508)
T ss_pred HHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHH
Confidence 3456642 1344555555554 788899999999999999999985 44444444333
No 140
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=81.61 E-value=3.3 Score=25.15 Aligned_cols=35 Identities=26% Similarity=0.188 Sum_probs=24.8
Q ss_pred EEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCC
Q 035722 30 GSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSR 66 (80)
Q Consensus 30 ~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~ 66 (80)
|||+|++..+|+.|++.+.... +..+.+..|..+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcc
Confidence 6999999999999998644433 2445666665443
No 141
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=77.73 E-value=5.9 Score=18.56 Aligned_cols=17 Identities=29% Similarity=0.475 Sum_probs=13.8
Q ss_pred CHHHHhccCCceeEEEE
Q 035722 1 MIADAFSQFGQVTKATI 17 (80)
Q Consensus 1 ~l~~~f~~~G~i~~~~~ 17 (80)
.|+++|+..|+|.-+-+
T Consensus 10 ~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 10 EIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHhcCcEEEEEE
Confidence 37899999999876654
No 142
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=71.06 E-value=0.61 Score=27.46 Aligned_cols=57 Identities=23% Similarity=0.299 Sum_probs=42.6
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEE
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFV 59 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v 59 (80)
++..|++.|++..++...+. .++.+.++++.++.......++..+.+....-+++.+
T Consensus 101 ~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~~~ 157 (267)
T KOG4454|consen 101 LYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKVTI 157 (267)
T ss_pred heeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHhhhhcccCcCCCCccc
Confidence 45677888888888888777 4778889999999888888888877665544444333
No 143
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=70.83 E-value=10 Score=18.57 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=22.5
Q ss_pred CeeeEEEEEECCHHHHHHHHHhhCCee
Q 035722 25 TSKGYGSVTFSTEEEAQKALTEMNGKL 51 (80)
Q Consensus 25 ~~~g~~~v~f~~~~~~~~a~~~l~~~~ 51 (80)
..+||-|++=.+..++..|++.+.+..
T Consensus 42 ~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 42 SLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp TSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CCceEEEEEeCCHHHHHHHHhccccee
Confidence 378999999999999999999876644
No 144
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=70.14 E-value=14 Score=24.23 Aligned_cols=43 Identities=21% Similarity=0.341 Sum_probs=33.9
Q ss_pred CceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecC
Q 035722 10 GQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDG 54 (80)
Q Consensus 10 G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~ 54 (80)
-.|.++++++|. .-.+=..++.|.+..+|..-...+||..+..
T Consensus 100 ~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 100 KQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred hhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 457788898863 2234457999999999999999999988664
No 145
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=67.42 E-value=4.1 Score=24.80 Aligned_cols=54 Identities=30% Similarity=0.167 Sum_probs=37.8
Q ss_pred HhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEE
Q 035722 5 AFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLF 58 (80)
Q Consensus 5 ~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~ 58 (80)
++..+|......+........++|++++.|...+.+..++.........+..+.
T Consensus 108 ~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~ 161 (285)
T KOG4210|consen 108 FSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGE 161 (285)
T ss_pred cchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhcccccccccc
Confidence 445567666666655555777899999999999999999985333355554433
No 146
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=62.05 E-value=2.3 Score=29.89 Aligned_cols=60 Identities=22% Similarity=0.246 Sum_probs=44.7
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEec
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV 62 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~ 62 (80)
|+..|..+|.+.++.+-..+ -+.-.-|+|+.|.+...+..|+..+.+..|..-.+++.+.
T Consensus 389 iR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 389 IRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 67789999999998875553 2333348999999988888888888777766656566555
No 147
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=51.37 E-value=5.9 Score=26.96 Aligned_cols=49 Identities=14% Similarity=0.104 Sum_probs=35.5
Q ss_pred HHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEe
Q 035722 4 DAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61 (80)
Q Consensus 4 ~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~ 61 (80)
.++..+|-|.++... -|||..|.+.....+|+..++...++|..+.+.-
T Consensus 59 ~il~~~g~v~s~kr~---------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 59 SILAKSGFVPSWKRD---------KFGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred HHHhhCCcchhhhhh---------hhcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 344555655554321 1999999999999999998888888887765553
No 148
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=50.91 E-value=31 Score=17.09 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=19.1
Q ss_pred eeEEEEeecCCCCCeeeEEEEEECC
Q 035722 12 VTKATIIMDKGKNTSKGYGSVTFST 36 (80)
Q Consensus 12 i~~~~~~~~~~~~~~~g~~~v~f~~ 36 (80)
|.++++-.-...+..+++|-++|.+
T Consensus 3 itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 3 ITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred cEEEEEEEecCCCCEEEEEEEEECC
Confidence 5667766555568899999999976
No 149
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=50.51 E-value=45 Score=18.82 Aligned_cols=38 Identities=11% Similarity=0.114 Sum_probs=28.4
Q ss_pred eeEEEEEECCHHHHHHHHHhhCCeeecC-----EEEEEEecCC
Q 035722 27 KGYGSVTFSTEEEAQKALTEMNGKLLDG-----RVLFVDNVRP 64 (80)
Q Consensus 27 ~g~~~v~f~~~~~~~~a~~~l~~~~~~~-----~~i~v~~~~~ 64 (80)
-..||+.|.+.+++..-...++|+.+-+ ..-.|++|.-
T Consensus 55 ~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~~~~~~VE~Apy 97 (176)
T PF03467_consen 55 YSRAYINFKNPEDLLEFRDRFDGHVFVDSKGNEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-EEEEEEEE-SS
T ss_pred ceEEEEEeCCHHHHHHHHHhcCCcEEECCCCCCcceeEEEcch
Confidence 3579999999999999999999988654 3457777653
No 150
>KOG0829 consensus 60S ribosomal protein L18A [Translation, ribosomal structure and biogenesis]
Probab=46.66 E-value=30 Score=19.43 Aligned_cols=44 Identities=14% Similarity=0.292 Sum_probs=28.0
Q ss_pred HHhccCCceeEEEEeecCCCCCeeeEEE-EEECCHHHHHHHHHhh
Q 035722 4 DAFSQFGQVTKATIIMDKGKNTSKGYGS-VTFSTEEEAQKALTEM 47 (80)
Q Consensus 4 ~~f~~~G~i~~~~~~~~~~~~~~~g~~~-v~f~~~~~~~~a~~~l 47 (80)
.+=..-|+|..|.-+..+.-..-+.||+ +.|.+....+.+...+
T Consensus 46 KvKks~Geiv~i~qi~E~~p~~vkNfGIwlrYdSRsG~HNmYkEy 90 (169)
T KOG0829|consen 46 KVKKSSGEIVAINQIFEKSPLKVKNFGIWLRYDSRSGTHNMYKEY 90 (169)
T ss_pred HHhhcCceEEEeceecCCCCceeeeeEEEEEEccCCcchHHHHHH
Confidence 3334568999997766665666778885 6777655444444333
No 151
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=45.60 E-value=35 Score=16.06 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=19.2
Q ss_pred EEEEEECCHHHHHHHHHhhCCeeecC
Q 035722 29 YGSVTFSTEEEAQKALTEMNGKLLDG 54 (80)
Q Consensus 29 ~~~v~f~~~~~~~~a~~~l~~~~~~~ 54 (80)
+.++.|.+..++-++-+.+....+..
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~ 28 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPV 28 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcE
Confidence 57899999988888777666554443
No 152
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=43.09 E-value=66 Score=18.65 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=29.8
Q ss_pred eEEEEEECCHHHHHHHHHhhCCeeecCE-EEEEEecCCCC
Q 035722 28 GYGSVTFSTEEEAQKALTEMNGKLLDGR-VLFVDNVRPSR 66 (80)
Q Consensus 28 g~~~v~f~~~~~~~~a~~~l~~~~~~~~-~i~v~~~~~~~ 66 (80)
++..+.|.++..+..|...++...+.|. .+..-++.+..
T Consensus 52 rrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~~ 91 (193)
T KOG4019|consen 52 RRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPGH 91 (193)
T ss_pred ceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCCC
Confidence 3456889999999999988999999887 56655555443
No 153
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=42.85 E-value=48 Score=16.92 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=17.9
Q ss_pred eeEEEEeecCCCCCeeeEEEEEECC
Q 035722 12 VTKATIIMDKGKNTSKGYGSVTFST 36 (80)
Q Consensus 12 i~~~~~~~~~~~~~~~g~~~v~f~~ 36 (80)
|..+++-.-...|+.+++|-++|.+
T Consensus 3 ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 3 VTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred EEEEEEEEeCCCCcEEEEEEEEECC
Confidence 5566654444457889999999976
No 154
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=40.15 E-value=52 Score=16.53 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=21.8
Q ss_pred EEEEECCHHHHHHHHHhhCCee--ecCEEEEEEe
Q 035722 30 GSVTFSTEEEAQKALTEMNGKL--LDGRVLFVDN 61 (80)
Q Consensus 30 ~~v~f~~~~~~~~a~~~l~~~~--~~~~~i~v~~ 61 (80)
|+++|.++.-|++.+.. ..+. +.+..+.|.-
T Consensus 1 AlITF~e~~VA~~i~~~-~~~~v~l~~~~~~V~v 33 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKK-KKHPVPLEDCCVRVKV 33 (88)
T ss_pred CEEEeCcHHHHHHHHhC-CEEEEEECCEEEEEEE
Confidence 57899999999999874 3343 5565655553
No 155
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=37.10 E-value=67 Score=16.90 Aligned_cols=41 Identities=17% Similarity=0.364 Sum_probs=22.3
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECC-HHHHHHHHH
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFST-EEEAQKALT 45 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~-~~~~~~a~~ 45 (80)
|.+.|..|.++. +....++ ..+.|+++|.|.+ -.....|++
T Consensus 34 l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 34 LLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp HHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred HHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 566777787764 5555554 3578999999975 344444443
No 156
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=33.66 E-value=34 Score=15.36 Aligned_cols=11 Identities=36% Similarity=0.564 Sum_probs=8.1
Q ss_pred eeeEEEEEECC
Q 035722 26 SKGYGSVTFST 36 (80)
Q Consensus 26 ~~g~~~v~f~~ 36 (80)
.+||||+...+
T Consensus 7 ~~GfGFv~~~~ 17 (58)
T PF08206_consen 7 PKGFGFVIPDD 17 (58)
T ss_dssp SSS-EEEEECT
T ss_pred cCCCEEEEECC
Confidence 57899998876
No 157
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=32.99 E-value=56 Score=22.41 Aligned_cols=29 Identities=24% Similarity=0.450 Sum_probs=21.2
Q ss_pred EEEEECCHHHHHHHHHhhCC--eeecCEEEE
Q 035722 30 GSVTFSTEEEAQKALTEMNG--KLLDGRVLF 58 (80)
Q Consensus 30 ~~v~f~~~~~~~~a~~~l~~--~~~~~~~i~ 58 (80)
=||+|.+..+|+.|...|.. ..+.|++|.
T Consensus 215 WyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 215 WYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred eEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 37999999999999876644 236666553
No 158
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=32.16 E-value=45 Score=17.88 Aligned_cols=16 Identities=19% Similarity=0.422 Sum_probs=13.2
Q ss_pred HHHHhccCCceeEEEE
Q 035722 2 IADAFSQFGQVTKATI 17 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~ 17 (80)
|.++|+.-|+|.++-.
T Consensus 18 LSDYfeSPGKI~svIt 33 (145)
T TIGR02542 18 LSDYFESPGKIQSVIT 33 (145)
T ss_pred hhHHhcCCCceEEEEE
Confidence 6789999999998743
No 159
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=27.61 E-value=95 Score=15.75 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=19.8
Q ss_pred ceeEEEEeecCCCCCeeeEEEEEECC
Q 035722 11 QVTKATIIMDKGKNTSKGYGSVTFST 36 (80)
Q Consensus 11 ~i~~~~~~~~~~~~~~~g~~~v~f~~ 36 (80)
+|.++++-+-...|+.+.++-++|.+
T Consensus 2 ~iTdVRirkv~~dgrmkA~vsvT~D~ 27 (95)
T COG2088 2 EITDVRIRKVDTDGRMKAYVSVTLDN 27 (95)
T ss_pred cceeEEEEEecCCCcEEEEEEEEecc
Confidence 35667776666678888999999876
No 160
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=26.08 E-value=2.3e+02 Score=19.64 Aligned_cols=34 Identities=3% Similarity=0.066 Sum_probs=28.1
Q ss_pred EEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecC
Q 035722 29 YGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63 (80)
Q Consensus 29 ~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~ 63 (80)
|.||+... ..+...+..|++..+.|+.+.|+.+.
T Consensus 528 ~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 528 HSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred ceEEEcCh-hhHHHHHHHhccccccCCceEEEECC
Confidence 78888764 55778888899999999999999875
No 161
>PRK15464 cold shock-like protein CspH; Provisional
Probab=25.59 E-value=40 Score=16.03 Aligned_cols=11 Identities=27% Similarity=0.286 Sum_probs=8.0
Q ss_pred eeeEEEEEECC
Q 035722 26 SKGYGSVTFST 36 (80)
Q Consensus 26 ~~g~~~v~f~~ 36 (80)
.+||+|+.-.+
T Consensus 15 ~KGfGFI~~~~ 25 (70)
T PRK15464 15 KSGKGFIIPSD 25 (70)
T ss_pred CCCeEEEccCC
Confidence 47899996654
No 162
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=24.44 E-value=47 Score=15.95 Aligned_cols=11 Identities=27% Similarity=0.537 Sum_probs=7.8
Q ss_pred eeeEEEEEECC
Q 035722 26 SKGYGSVTFST 36 (80)
Q Consensus 26 ~~g~~~v~f~~ 36 (80)
.+||+|+.-.+
T Consensus 12 ~KGfGFI~~~~ 22 (74)
T PRK09937 12 AKGFGFICPEG 22 (74)
T ss_pred CCCeEEEeeCC
Confidence 47899996543
No 163
>PRK15463 cold shock-like protein CspF; Provisional
Probab=24.40 E-value=46 Score=15.76 Aligned_cols=11 Identities=36% Similarity=0.401 Sum_probs=8.1
Q ss_pred eeeEEEEEECC
Q 035722 26 SKGYGSVTFST 36 (80)
Q Consensus 26 ~~g~~~v~f~~ 36 (80)
.+||+|+.-.+
T Consensus 15 ~kGfGFI~~~~ 25 (70)
T PRK15463 15 KSGKGLITPSD 25 (70)
T ss_pred CCceEEEecCC
Confidence 37899996654
No 164
>PRK14998 cold shock-like protein CspD; Provisional
Probab=23.89 E-value=49 Score=15.84 Aligned_cols=11 Identities=27% Similarity=0.537 Sum_probs=8.0
Q ss_pred eeeEEEEEECC
Q 035722 26 SKGYGSVTFST 36 (80)
Q Consensus 26 ~~g~~~v~f~~ 36 (80)
.+||+|+.-.+
T Consensus 12 ~kGfGFI~~~~ 22 (73)
T PRK14998 12 AKGFGFICPEG 22 (73)
T ss_pred CCceEEEecCC
Confidence 47899996654
No 165
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=23.64 E-value=35 Score=21.22 Aligned_cols=17 Identities=29% Similarity=0.640 Sum_probs=14.1
Q ss_pred HHHHhccCCceeEEEEe
Q 035722 2 IADAFSQFGQVTKATII 18 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~ 18 (80)
|+..|..||.|..+.++
T Consensus 178 lr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 178 LRKAFEAFGEIRNVDIP 194 (445)
T ss_pred HHHHHHHhccceecCCc
Confidence 67789999999988764
No 166
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=23.36 E-value=46 Score=15.65 Aligned_cols=11 Identities=45% Similarity=0.694 Sum_probs=7.9
Q ss_pred eeeEEEEEECC
Q 035722 26 SKGYGSVTFST 36 (80)
Q Consensus 26 ~~g~~~v~f~~ 36 (80)
.+||+|+.=.+
T Consensus 14 ~kGyGFI~~~~ 24 (69)
T PRK09507 14 SKGFGFITPED 24 (69)
T ss_pred CCCcEEEecCC
Confidence 47899986654
No 167
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.15 E-value=2e+02 Score=20.06 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=28.2
Q ss_pred EEEEEECCHHHHHHHHHhhCCeeecC--EEEEEEecC
Q 035722 29 YGSVTFSTEEEAQKALTEMNGKLLDG--RVLFVDNVR 63 (80)
Q Consensus 29 ~~~v~f~~~~~~~~a~~~l~~~~~~~--~~i~v~~~~ 63 (80)
||.|.|.+...|......++|..+.. ..+.+++..
T Consensus 270 yAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 270 YAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred EEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 78999999999999999999988664 555666543
No 168
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=22.25 E-value=1.6e+02 Score=21.23 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=17.8
Q ss_pred eeEEEEEECCHHHHHHHHHhh
Q 035722 27 KGYGSVTFSTEEEAQKALTEM 47 (80)
Q Consensus 27 ~g~~~v~f~~~~~~~~a~~~l 47 (80)
.+.+|++|++...|+.|-+..
T Consensus 357 ~~~~FItFkSq~~Aq~~aQ~~ 377 (827)
T COG5594 357 TKSGFITFKSQASAQIAAQSQ 377 (827)
T ss_pred cccEEEEEehhHHHHHHHHhh
Confidence 457999999999999988754
No 169
>PRK10943 cold shock-like protein CspC; Provisional
Probab=22.17 E-value=48 Score=15.56 Aligned_cols=11 Identities=45% Similarity=0.721 Sum_probs=8.0
Q ss_pred eeeEEEEEECC
Q 035722 26 SKGYGSVTFST 36 (80)
Q Consensus 26 ~~g~~~v~f~~ 36 (80)
.+||+|+.=.+
T Consensus 14 ~kGfGFI~~~~ 24 (69)
T PRK10943 14 SKGFGFITPAD 24 (69)
T ss_pred CCCcEEEecCC
Confidence 47899997654
No 170
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=22.14 E-value=56 Score=15.24 Aligned_cols=11 Identities=27% Similarity=0.537 Sum_probs=8.3
Q ss_pred eeeEEEEEECC
Q 035722 26 SKGYGSVTFST 36 (80)
Q Consensus 26 ~~g~~~v~f~~ 36 (80)
.+||+|+.-.+
T Consensus 12 ~kGfGFI~~~~ 22 (68)
T TIGR02381 12 AKGFGFICPEG 22 (68)
T ss_pred CCCeEEEecCC
Confidence 47899997654
No 171
>PRK09213 pur operon repressor; Provisional
Probab=21.68 E-value=2.1e+02 Score=17.61 Aligned_cols=39 Identities=23% Similarity=0.396 Sum_probs=28.0
Q ss_pred HHHHhccC--CceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhh
Q 035722 2 IADAFSQF--GQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEM 47 (80)
Q Consensus 2 l~~~f~~~--G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l 47 (80)
+++.|.+. |.+..+ .|...|.-|+.+.+.+++...+..|
T Consensus 47 ~~~~~~~~~~g~~~t~-------~ga~ggv~~~p~~~~~~a~~~~~~L 87 (271)
T PRK09213 47 IKETFEKQGIGTLETV-------PGAAGGVKYIPSISEEEAREFVEEL 87 (271)
T ss_pred HHHHHHhcCCceEEEe-------CCCCCCeEEEcCCCHHHHHHHHHHH
Confidence 56777764 444444 5677788899999988888877655
No 172
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=21.32 E-value=1.4e+02 Score=16.01 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=19.3
Q ss_pred CeeeEEEEEECCHHHHHHHHHhhCCe
Q 035722 25 TSKGYGSVTFSTEEEAQKALTEMNGK 50 (80)
Q Consensus 25 ~~~g~~~v~f~~~~~~~~a~~~l~~~ 50 (80)
.-+||-|+......+...++....+.
T Consensus 36 ~fpGYvFV~~~~~~~~~~~i~~~~gv 61 (145)
T TIGR00405 36 SLKGYILVEAETKIDMRNPIIGVPHV 61 (145)
T ss_pred CCCcEEEEEEECcHHHHHHHhCCCCE
Confidence 36889999998777777777666553
No 173
>PRK09890 cold shock protein CspG; Provisional
Probab=21.27 E-value=53 Score=15.47 Aligned_cols=11 Identities=36% Similarity=0.652 Sum_probs=8.0
Q ss_pred eeeEEEEEECC
Q 035722 26 SKGYGSVTFST 36 (80)
Q Consensus 26 ~~g~~~v~f~~ 36 (80)
.+||+|++=.+
T Consensus 15 ~kGfGFI~~~~ 25 (70)
T PRK09890 15 DKGFGFITPDD 25 (70)
T ss_pred CCCcEEEecCC
Confidence 37899997654
No 174
>PF09180 ProRS-C_1: Prolyl-tRNA synthetase, C-terminal; InterPro: IPR016061 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Prolyl tRNA synthetase (6.1.1.15 from EC) exists in two forms, which are loosely related. The first form is present in the majority of eubacteria species. The second one, present in some eubacteria, is essentially present in archaea and eukaryota. Prolyl-tRNA synthetase belongs to class IIa. This domain is found at the C-terminal in archaeal and eukaryotic enzymes, as well as in certain bacterial ones.; GO: 0000166 nucleotide binding, 0004827 proline-tRNA ligase activity, 0005524 ATP binding, 0006433 prolyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1NJ6_A 1NJ2_A 1NJ5_A 1NJ1_A 1H4T_C 1H4S_A 1HC7_C 1H4Q_B 3IAL_B.
Probab=20.66 E-value=1.2e+02 Score=14.24 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=21.2
Q ss_pred eeEEEEEECCHHHHHHHHHhhCCeeecCEE
Q 035722 27 KGYGSVTFSTEEEAQKALTEMNGKLLDGRV 56 (80)
Q Consensus 27 ~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~ 56 (80)
.|++.+.+....+.+..++..-+..+.+-+
T Consensus 11 gg~v~~pwcg~~ece~~ike~t~at~rciP 40 (68)
T PF09180_consen 11 GGFVLVPWCGDEECEEKIKEETGATIRCIP 40 (68)
T ss_dssp SSEEEEEES-SHHHHHHHHHHHS-EEEEEE
T ss_pred CCEEEEEccCCHHHHHHHHHhcCCcEeEeE
Confidence 468999999888888888877665555444
No 175
>PRK10354 RNA chaperone/anti-terminator; Provisional
Probab=20.59 E-value=56 Score=15.34 Aligned_cols=11 Identities=36% Similarity=0.652 Sum_probs=7.7
Q ss_pred eeeEEEEEECC
Q 035722 26 SKGYGSVTFST 36 (80)
Q Consensus 26 ~~g~~~v~f~~ 36 (80)
.+||+|+.-.+
T Consensus 15 ~kGfGFI~~~~ 25 (70)
T PRK10354 15 DKGFGFITPDD 25 (70)
T ss_pred CCCcEEEecCC
Confidence 37899986543
No 176
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=20.46 E-value=1.7e+02 Score=16.06 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=20.3
Q ss_pred eeeEEEEEECCHHHHHHHHHhhCCe
Q 035722 26 SKGYGSVTFSTEEEAQKALTEMNGK 50 (80)
Q Consensus 26 ~~g~~~v~f~~~~~~~~a~~~l~~~ 50 (80)
.+||-|+.....+++-.++..+.+.
T Consensus 45 fpGYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 45 LKGYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred CCcEEEEEEEChHHHHHHHhcCCCE
Confidence 5899999998888888888776653
No 177
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=20.14 E-value=1.2e+02 Score=14.33 Aligned_cols=20 Identities=15% Similarity=0.297 Sum_probs=13.3
Q ss_pred HHHHhccCCceeEEEEeecC
Q 035722 2 IADAFSQFGQVTKATIIMDK 21 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~ 21 (80)
|...|.+--.+.++.+.-.+
T Consensus 35 ler~fl~~P~v~e~~l~EKK 54 (64)
T PF13046_consen 35 LERHFLPLPEVKEVALYEKK 54 (64)
T ss_pred hhhhccCCCCceEEEEEEEE
Confidence 45667677778887775543
Done!