Query 035722
Match_columns 80
No_of_seqs 120 out of 1836
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 09:20:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035722.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035722hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 8.9E-21 3.1E-25 95.8 9.3 64 2-65 36-99 (99)
2 3s8s_A Histone-lysine N-methyl 99.8 1.8E-19 6E-24 92.5 9.9 66 2-67 23-88 (110)
3 3md1_A Nuclear and cytoplasmic 99.8 7.7E-19 2.6E-23 85.7 10.3 65 2-66 18-82 (83)
4 3bs9_A Nucleolysin TIA-1 isofo 99.8 8E-19 2.7E-23 86.3 9.4 64 2-65 23-86 (87)
5 2cq0_A Eukaryotic translation 99.8 1.2E-18 4E-23 88.2 9.8 69 2-70 32-100 (103)
6 1whw_A Hypothetical protein ri 99.8 7.8E-19 2.7E-23 88.3 9.0 70 2-71 25-94 (99)
7 2cpz_A CUG triplet repeat RNA- 99.8 1.2E-18 4.2E-23 89.7 9.5 70 2-71 42-111 (115)
8 2lxi_A RNA-binding protein 10; 99.8 6.5E-20 2.2E-24 91.3 4.5 68 2-69 18-87 (91)
9 2cqb_A Peptidyl-prolyl CIS-tra 99.8 6E-19 2.1E-23 89.1 8.0 71 2-72 29-99 (102)
10 2do4_A Squamous cell carcinoma 99.8 2.1E-18 7.3E-23 86.8 10.0 66 2-68 34-99 (100)
11 2dgo_A Cytotoxic granule-assoc 99.8 3.4E-18 1.2E-22 88.0 10.8 68 2-69 32-99 (115)
12 2dnz_A Probable RNA-binding pr 99.8 1E-18 3.5E-23 87.2 8.5 70 2-71 22-91 (95)
13 3p5t_L Cleavage and polyadenyl 99.8 9.7E-20 3.3E-24 90.4 4.3 67 2-68 18-86 (90)
14 2dgs_A DAZ-associated protein 99.8 1.4E-18 4.8E-23 87.4 8.6 69 2-71 27-95 (99)
15 3ns6_A Eukaryotic translation 99.8 1.9E-19 6.6E-24 90.9 5.2 65 2-66 29-94 (100)
16 2cpf_A RNA binding motif prote 99.8 2.7E-18 9.3E-23 86.1 8.7 70 2-71 22-94 (98)
17 2cqc_A Arginine/serine-rich sp 99.8 6E-18 2.1E-22 84.3 9.8 63 2-64 32-94 (95)
18 2x1f_A MRNA 3'-END-processing 99.8 2.6E-18 9E-23 86.0 8.4 67 2-68 19-85 (96)
19 1x5t_A Splicing factor 3B subu 99.8 1.4E-18 4.9E-23 86.8 7.3 68 2-69 22-90 (96)
20 1p27_B RNA-binding protein 8A; 99.8 1.8E-18 6.3E-23 87.8 7.7 66 2-67 40-105 (106)
21 1x4h_A RNA-binding protein 28; 99.8 3.9E-18 1.3E-22 87.2 8.7 69 2-70 32-106 (111)
22 1oo0_B CG8781-PA, drosophila Y 99.8 2.5E-18 8.5E-23 87.9 7.9 66 2-67 43-108 (110)
23 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.9E-18 1E-22 84.0 7.8 62 2-63 24-85 (85)
24 2lkz_A RNA-binding protein 5; 99.8 5.6E-19 1.9E-23 88.6 5.2 63 2-64 26-94 (95)
25 4f25_A Polyadenylate-binding p 99.8 6.3E-18 2.2E-22 87.2 9.2 66 2-69 22-87 (115)
26 2dnm_A SRP46 splicing factor; 99.8 1.4E-18 4.7E-23 88.0 6.4 69 2-70 30-98 (103)
27 3ucg_A Polyadenylate-binding p 99.8 7.1E-18 2.4E-22 83.2 8.8 64 2-66 23-86 (89)
28 2dng_A Eukaryotic translation 99.8 1.6E-17 5.4E-22 84.0 10.2 68 2-71 32-99 (103)
29 1u6f_A Tcubp1, RNA-binding pro 99.8 6.1E-18 2.1E-22 89.5 8.9 69 2-70 59-127 (139)
30 4a8x_A RNA-binding protein wit 99.8 3.3E-18 1.1E-22 84.2 7.3 66 2-67 21-87 (88)
31 2jrs_A RNA-binding protein 39; 99.8 3.5E-18 1.2E-22 87.3 7.6 65 2-66 43-107 (108)
32 2cpe_A RNA-binding protein EWS 99.8 5E-18 1.7E-22 87.1 8.1 70 2-71 32-109 (113)
33 1x5s_A Cold-inducible RNA-bind 99.8 1.6E-18 5.4E-23 87.6 6.1 70 2-71 29-98 (102)
34 2e5h_A Zinc finger CCHC-type a 99.8 7.3E-18 2.5E-22 83.9 8.4 62 2-63 33-94 (94)
35 1x5u_A Splicing factor 3B subu 99.8 2.6E-18 8.9E-23 87.1 6.8 68 2-69 32-99 (105)
36 2kn4_A Immunoglobulin G-bindin 99.8 2.8E-18 9.7E-23 92.4 7.3 69 2-70 87-155 (158)
37 2kxn_B Transformer-2 protein h 99.8 2.6E-18 9E-23 90.3 7.0 66 2-67 63-128 (129)
38 2do0_A HnRNP M, heterogeneous 99.8 3.7E-17 1.3E-21 83.9 11.0 67 2-69 32-98 (114)
39 2dh8_A DAZ-associated protein 99.8 7.5E-18 2.5E-22 85.5 8.2 68 2-70 33-100 (105)
40 1h2v_Z 20 kDa nuclear CAP bind 99.8 2E-17 6.8E-22 89.1 10.2 67 2-68 56-122 (156)
41 2d9p_A Polyadenylate-binding p 99.8 1.2E-17 4E-22 84.5 8.6 68 2-71 32-99 (103)
42 3n9u_C Cleavage and polyadenyl 99.8 8E-18 2.7E-22 90.9 8.3 64 2-65 72-137 (156)
43 2dgx_A KIAA0430 protein; RRM d 99.8 1E-17 3.5E-22 83.9 8.2 64 2-68 30-93 (96)
44 2dgp_A Bruno-like 4, RNA bindi 99.8 2.8E-18 9.6E-23 87.1 6.1 71 2-72 30-103 (106)
45 2dnh_A Bruno-like 5, RNA bindi 99.8 1.4E-17 4.9E-22 84.4 8.7 67 2-69 32-101 (105)
46 2cph_A RNA binding motif prote 99.8 7.6E-18 2.6E-22 85.6 7.7 69 2-70 32-102 (107)
47 2div_A TRNA selenocysteine ass 99.7 7.3E-18 2.5E-22 84.7 7.2 66 2-67 26-96 (99)
48 2fy1_A RNA-binding motif prote 99.7 8.6E-18 2.9E-22 86.8 7.6 65 2-67 24-88 (116)
49 2jwn_A Embryonic polyadenylate 99.7 4.1E-17 1.4E-21 84.9 10.1 65 2-67 53-117 (124)
50 1x4b_A Heterogeneous nuclear r 99.7 2.4E-17 8.3E-22 84.9 9.2 68 2-70 44-111 (116)
51 2la6_A RNA-binding protein FUS 99.7 1E-17 3.5E-22 84.2 7.5 62 2-63 30-99 (99)
52 1wi8_A EIF-4B, eukaryotic tran 99.7 1.9E-17 6.6E-22 83.9 8.6 67 2-70 32-99 (104)
53 2rs2_A Musashi-1, RNA-binding 99.7 2.2E-17 7.6E-22 84.5 8.9 66 2-68 42-107 (109)
54 3ulh_A THO complex subunit 4; 99.7 2.9E-17 1E-21 83.5 9.3 61 2-63 46-106 (107)
55 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.8E-17 6.2E-22 90.0 9.0 68 2-69 89-156 (165)
56 1p1t_A Cleavage stimulation fa 99.7 7E-18 2.4E-22 85.4 6.6 67 2-68 25-91 (104)
57 2kt5_A RNA and export factor-b 99.7 2.8E-17 9.5E-22 85.6 9.0 69 2-71 52-120 (124)
58 2pe8_A Splicing factor 45; RRM 99.7 3.2E-17 1.1E-21 83.5 9.0 63 2-64 30-93 (105)
59 2cq3_A RNA-binding protein 9; 99.7 5.9E-17 2E-21 81.9 9.9 68 2-71 32-99 (103)
60 2cqd_A RNA-binding region cont 99.7 2.5E-17 8.5E-22 84.9 8.5 65 2-67 34-98 (116)
61 2ywk_A Putative RNA-binding pr 99.7 3.6E-17 1.2E-21 81.5 8.7 62 2-64 33-94 (95)
62 2cqi_A Nucleolysin TIAR; RNA r 99.7 5.1E-17 1.8E-21 82.1 9.4 68 2-71 32-99 (103)
63 2cqp_A RNA-binding protein 12; 99.7 1.2E-17 4.1E-22 83.7 6.9 65 2-66 32-96 (98)
64 2cpi_A CCR4-NOT transcription 99.7 7.2E-17 2.5E-21 82.7 9.7 64 4-67 37-103 (111)
65 2cqg_A TDP-43, TAR DNA-binding 99.7 1.5E-16 5.1E-21 80.4 10.7 67 2-70 32-98 (103)
66 2dhg_A TRNA selenocysteine ass 99.7 1.4E-17 4.7E-22 84.3 6.7 68 2-70 26-95 (104)
67 2cq4_A RNA binding motif prote 99.7 3.4E-18 1.1E-22 87.9 4.3 66 2-68 42-107 (114)
68 3ex7_B RNA-binding protein 8A; 99.7 9.5E-18 3.3E-22 87.5 6.1 66 2-67 39-104 (126)
69 2khc_A Testis-specific RNP-typ 99.7 1.4E-17 4.7E-22 86.0 6.6 62 2-63 57-118 (118)
70 3s7r_A Heterogeneous nuclear r 99.7 9.2E-17 3.1E-21 79.0 9.2 60 2-62 28-87 (87)
71 1jmt_A Splicing factor U2AF 35 99.7 4.6E-17 1.6E-21 82.8 7.7 61 2-63 43-104 (104)
72 2dgv_A HnRNP M, heterogeneous 99.7 4.8E-17 1.6E-21 80.7 7.6 65 2-68 25-89 (92)
73 2dgw_A Probable RNA-binding pr 99.7 1.6E-16 5.5E-21 78.7 9.5 63 2-67 27-89 (91)
74 2ek1_A RNA-binding protein 12; 99.7 2.4E-17 8.1E-22 82.2 6.5 63 2-64 32-94 (95)
75 2j8a_A Histone-lysine N-methyl 99.7 3.6E-17 1.2E-21 85.6 7.3 64 2-65 23-96 (136)
76 2ki2_A SS-DNA binding protein 99.7 2.7E-18 9.3E-23 84.9 2.5 66 2-68 18-83 (90)
77 2m2b_A RNA-binding protein 10; 99.7 4.2E-18 1.4E-22 89.5 3.3 66 2-68 40-111 (131)
78 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2E-17 6.9E-22 83.4 5.2 63 2-66 36-99 (100)
79 2lea_A Serine/arginine-rich sp 99.7 1.3E-17 4.5E-22 88.2 4.7 68 2-69 64-131 (135)
80 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 7E-17 2.4E-21 85.3 7.4 61 2-62 80-140 (140)
81 2mss_A Protein (musashi1); RNA 99.7 1E-17 3.6E-22 80.3 3.8 60 2-62 16-75 (75)
82 2wbr_A GW182, gawky, LD47780P; 99.7 8.1E-17 2.8E-21 79.3 6.7 55 2-62 24-78 (89)
83 2nlw_A Eukaryotic translation 99.7 4.3E-17 1.5E-21 82.8 5.8 64 2-67 38-102 (105)
84 3md3_A Nuclear and cytoplasmic 99.7 4E-16 1.4E-20 83.8 9.9 63 2-64 104-166 (166)
85 1x5o_A RNA binding motif, sing 99.7 1.6E-16 5.6E-21 81.5 7.7 64 2-66 42-113 (114)
86 3v4m_A Splicing factor U2AF 65 99.7 1.4E-16 4.7E-21 81.1 7.2 63 2-64 32-96 (105)
87 1x4a_A Splicing factor, argini 99.7 3.8E-16 1.3E-20 79.6 9.0 66 2-70 39-104 (109)
88 2qfj_A FBP-interacting repress 99.7 3.2E-16 1.1E-20 87.4 9.3 68 2-69 142-209 (216)
89 1s79_A Lupus LA protein; RRM, 99.7 5.7E-17 2E-21 82.3 5.6 61 2-64 28-88 (103)
90 2a3j_A U1 small nuclear ribonu 99.7 5.2E-17 1.8E-21 85.2 5.5 63 2-67 50-112 (127)
91 3q2s_C Cleavage and polyadenyl 99.7 5.5E-17 1.9E-21 92.2 5.8 63 2-64 85-149 (229)
92 2dis_A Unnamed protein product 99.7 8E-17 2.7E-21 82.1 5.9 67 2-68 25-95 (109)
93 2fc9_A NCL protein; structure 99.7 4.7E-16 1.6E-20 78.3 8.3 66 2-71 32-97 (101)
94 1x5p_A Negative elongation fac 99.7 1.1E-15 3.9E-20 76.5 9.6 64 2-71 30-93 (97)
95 1uaw_A Mouse-musashi-1; RNP-ty 99.7 4.1E-17 1.4E-21 78.5 4.1 60 2-62 17-76 (77)
96 3ue2_A Poly(U)-binding-splicin 99.7 4.2E-16 1.4E-20 80.8 8.2 63 2-64 42-108 (118)
97 2err_A Ataxin-2-binding protei 99.7 1.5E-16 5.3E-21 81.3 6.4 63 2-66 46-108 (109)
98 1x4e_A RNA binding motif, sing 99.7 1.4E-17 4.9E-22 81.6 2.4 62 2-63 22-83 (85)
99 2yh0_A Splicing factor U2AF 65 99.7 5E-16 1.7E-20 85.6 8.7 66 2-67 131-196 (198)
100 1x4g_A Nucleolysin TIAR; struc 99.7 5.6E-16 1.9E-20 79.1 7.8 64 2-71 42-105 (109)
101 2fc8_A NCL protein; structure 99.7 1.5E-15 5.1E-20 76.5 9.3 67 2-71 32-98 (102)
102 2lcw_A RNA-binding protein FUS 99.5 5.4E-18 1.9E-22 87.4 0.0 68 1-68 23-98 (116)
103 1fxl_A Paraneoplastic encephal 99.7 1.7E-15 5.8E-20 81.4 9.8 66 2-67 19-84 (167)
104 2g4b_A Splicing factor U2AF 65 99.7 7.2E-16 2.5E-20 83.4 8.3 62 2-63 111-172 (172)
105 1l3k_A Heterogeneous nuclear r 99.7 1.4E-15 4.7E-20 83.8 9.2 68 2-70 121-188 (196)
106 1x4c_A Splicing factor, argini 99.7 2.7E-15 9.3E-20 76.4 9.4 61 2-69 32-97 (108)
107 1b7f_A Protein (SXL-lethal pro 99.7 1.5E-15 5.1E-20 81.8 8.7 66 2-67 20-85 (168)
108 2cjk_A Nuclear polyadenylated 99.6 2.6E-16 9E-21 84.8 5.7 64 2-66 104-167 (167)
109 1sjq_A Polypyrimidine tract-bi 99.6 4.1E-16 1.4E-20 79.3 6.0 63 2-70 33-97 (105)
110 2dit_A HIV TAT specific factor 99.6 1.9E-15 6.4E-20 77.5 8.5 63 2-68 43-105 (112)
111 3pgw_S U1-70K; protein-RNA com 99.6 9.8E-16 3.4E-20 93.7 8.7 66 1-66 118-183 (437)
112 2cpy_A RNA-binding protein 12; 99.6 3.1E-16 1E-20 80.7 5.4 63 2-66 32-95 (114)
113 1why_A Hypothetical protein ri 99.6 7.7E-16 2.6E-20 77.0 6.7 61 2-68 34-96 (97)
114 2db1_A Heterogeneous nuclear r 99.6 1.1E-15 3.7E-20 79.1 7.5 62 2-65 34-98 (118)
115 2dnq_A RNA-binding protein 4B; 99.6 1.3E-15 4.4E-20 75.3 7.4 62 2-71 25-86 (90)
116 3smz_A Protein raver-1, ribonu 99.6 3.1E-15 1.1E-19 86.6 10.2 78 2-79 112-189 (284)
117 2krb_A Eukaryotic translation 99.6 1E-16 3.4E-21 78.0 3.3 56 2-59 24-80 (81)
118 1wez_A HnRNP H', FTP-3, hetero 99.6 4.8E-16 1.6E-20 78.7 5.8 64 2-68 32-95 (102)
119 2dgt_A RNA-binding protein 30; 99.6 5.4E-15 1.8E-19 73.3 9.3 62 2-71 27-88 (92)
120 4f02_A Polyadenylate-binding p 99.6 4E-15 1.4E-19 83.4 9.8 65 2-66 32-96 (213)
121 2jvo_A Nucleolar protein 3; nu 99.6 1.5E-15 5E-20 77.6 7.3 59 2-68 48-106 (108)
122 3md3_A Nuclear and cytoplasmic 99.6 6.6E-15 2.3E-19 79.0 10.3 65 2-67 17-81 (166)
123 2hgl_A HNRPF protein, heteroge 99.6 4.7E-16 1.6E-20 82.4 5.4 62 2-65 61-125 (136)
124 2hvz_A Splicing factor, argini 99.6 3.6E-16 1.2E-20 78.7 4.6 62 2-68 17-78 (101)
125 1nu4_A U1A RNA binding domain; 99.6 3.6E-16 1.2E-20 78.1 4.6 63 2-67 29-91 (97)
126 2cpx_A Hypothetical protein FL 99.6 7.3E-17 2.5E-21 82.9 2.0 70 2-71 42-111 (115)
127 1fjc_A Nucleolin RBD2, protein 99.6 1.2E-15 4E-20 76.2 6.3 62 2-68 33-94 (96)
128 1wg5_A Heterogeneous nuclear r 99.6 1.6E-15 5.5E-20 76.9 6.8 64 2-67 32-96 (104)
129 2cq1_A PTB-like protein L; RRM 99.6 5.8E-15 2E-19 74.7 8.8 62 2-69 32-95 (101)
130 2dgu_A Heterogeneous nuclear r 99.6 4.1E-15 1.4E-19 75.1 8.3 60 2-69 28-87 (103)
131 4f02_A Polyadenylate-binding p 99.6 3.6E-15 1.2E-19 83.6 8.8 63 2-66 120-182 (213)
132 1fj7_A Nucleolin RBD1, protein 99.6 1.9E-17 6.4E-22 83.5 -0.5 66 2-69 34-99 (101)
133 2xs2_A Deleted in azoospermia- 99.6 9.5E-16 3.3E-20 77.3 5.6 63 2-67 26-88 (102)
134 1iqt_A AUF1, heterogeneous nuc 99.6 1.1E-16 3.7E-21 76.7 1.9 60 2-62 16-75 (75)
135 2jvr_A Nucleolar protein 3; RN 99.6 1.2E-15 4.2E-20 78.3 5.9 61 2-66 45-106 (111)
136 3zzy_A Polypyrimidine tract-bi 99.6 1E-14 3.5E-19 76.6 9.4 61 2-67 45-108 (130)
137 2f3j_A RNA and export factor b 99.6 9.3E-16 3.2E-20 84.3 5.6 65 2-67 105-169 (177)
138 3egn_A RNA-binding protein 40; 99.6 3.1E-16 1.1E-20 83.3 3.6 69 2-70 62-135 (143)
139 1l3k_A Heterogeneous nuclear r 99.6 1E-14 3.5E-19 80.3 9.6 65 2-67 30-94 (196)
140 2ad9_A Polypyrimidine tract-bi 99.6 2.3E-15 7.9E-20 78.1 6.6 64 2-71 48-113 (119)
141 1wel_A RNA-binding protein 12; 99.6 2.1E-16 7.2E-21 82.3 2.5 64 2-66 42-105 (124)
142 1wf1_A RNA-binding protein RAL 99.6 3.7E-15 1.3E-19 76.1 7.0 58 2-67 45-102 (110)
143 2xnq_A Nuclear polyadenylated 99.6 8.8E-15 3E-19 73.4 8.2 57 2-66 40-96 (97)
144 3r27_A HnRNP L, heterogeneous 99.6 4E-15 1.4E-19 75.1 6.9 59 2-66 38-98 (100)
145 1b7f_A Protein (SXL-lethal pro 99.6 5.5E-15 1.9E-19 79.6 7.9 61 2-62 106-168 (168)
146 2dnn_A RNA-binding protein 12; 99.6 5.7E-15 1.9E-19 75.6 7.4 61 2-65 33-93 (109)
147 2la4_A Nuclear and cytoplasmic 99.6 2.1E-15 7.1E-20 75.9 5.5 58 2-65 44-101 (101)
148 1x4d_A Matrin 3; structural ge 99.6 3.6E-15 1.2E-19 75.6 6.3 60 2-67 33-94 (102)
149 2i2y_A Fusion protein consists 99.6 1.8E-15 6E-20 81.0 5.5 60 2-66 90-149 (150)
150 1wex_A Hypothetical protein (r 99.6 3.4E-15 1.2E-19 75.8 6.1 62 2-69 32-95 (104)
151 3lqv_A PRE-mRNA branch site pr 99.6 2.6E-15 9.1E-20 77.1 5.7 64 2-68 25-88 (115)
152 2bz2_A Negative elongation fac 99.6 2.8E-15 9.5E-20 78.0 5.8 61 2-68 54-114 (121)
153 2cpd_A Apobec-1 stimulating pr 99.6 2.5E-14 8.7E-19 71.7 9.2 60 2-69 32-93 (99)
154 2ghp_A U4/U6 snRNA-associated 99.6 7.6E-15 2.6E-19 85.2 8.3 64 2-66 228-292 (292)
155 2cpj_A Non-POU domain-containi 99.6 4.7E-15 1.6E-19 74.4 6.4 60 2-67 32-91 (99)
156 3smz_A Protein raver-1, ribonu 99.6 9.5E-15 3.3E-19 84.6 8.6 67 2-69 202-268 (284)
157 2d9o_A DNAJ (HSP40) homolog, s 99.6 9.9E-15 3.4E-19 73.7 7.6 61 2-69 34-94 (100)
158 3s6e_A RNA-binding protein 39; 99.6 5.6E-15 1.9E-19 76.2 6.6 59 2-64 34-92 (114)
159 1fxl_A Paraneoplastic encephal 99.6 8.6E-15 2.9E-19 78.6 7.6 61 2-62 105-167 (167)
160 2dnp_A RNA-binding protein 14; 99.6 1.3E-14 4.3E-19 71.7 7.5 59 2-68 26-84 (90)
161 2e5g_A U6 snRNA-specific termi 99.6 1.6E-14 5.3E-19 71.9 7.5 61 2-68 25-85 (94)
162 1sjr_A Polypyrimidine tract-bi 99.6 7E-15 2.4E-19 79.8 6.6 61 2-66 63-125 (164)
163 2ytc_A PRE-mRNA-splicing facto 99.6 1.3E-14 4.6E-19 70.8 7.0 56 2-63 29-85 (85)
164 2cqh_A IGF-II mRNA-binding pro 99.6 5.6E-15 1.9E-19 73.3 5.7 63 2-71 25-89 (93)
165 2e5j_A Methenyltetrahydrofolat 99.6 3E-15 1E-19 74.9 4.8 61 2-67 36-96 (97)
166 1whx_A Hypothetical protein ri 99.6 5.9E-15 2E-19 75.6 5.9 59 2-66 27-85 (111)
167 2kvi_A Nuclear polyadenylated 99.6 4.9E-15 1.7E-19 74.0 5.2 59 2-68 28-86 (96)
168 2lmi_A GRSF-1, G-rich sequence 99.6 7.6E-16 2.6E-20 78.4 1.9 63 2-66 28-93 (107)
169 2e5i_A Heterogeneous nuclear r 99.6 3.9E-14 1.3E-18 74.0 8.1 60 2-67 42-104 (124)
170 2qfj_A FBP-interacting repress 99.6 1.3E-14 4.6E-19 80.8 6.7 65 2-66 45-109 (216)
171 3tyt_A Heterogeneous nuclear r 99.6 3.6E-14 1.2E-18 79.4 8.3 59 2-65 22-80 (205)
172 2cq2_A Hypothetical protein LO 99.6 1.5E-14 5E-19 74.5 6.1 60 2-67 44-108 (114)
173 3nmr_A Cugbp ELAV-like family 99.5 2.9E-14 1E-18 77.1 7.6 61 2-63 112-175 (175)
174 2e44_A Insulin-like growth fac 99.5 1.5E-14 5.1E-19 72.1 5.8 61 2-66 32-93 (96)
175 1fje_B Nucleolin RBD12, protei 99.5 4E-14 1.4E-18 76.8 7.9 60 2-66 116-175 (175)
176 2diu_A KIAA0430 protein; struc 99.5 9.4E-15 3.2E-19 72.7 4.8 56 2-67 30-86 (96)
177 2hgn_A Heterogeneous nuclear r 99.5 1.6E-15 5.6E-20 80.5 1.9 64 2-68 63-126 (139)
178 2voo_A Lupus LA protein; RNA-b 99.5 1.1E-13 3.6E-18 77.0 9.3 63 2-66 126-188 (193)
179 2dha_A FLJ20171 protein; RRM d 99.5 1.1E-14 3.7E-19 76.0 4.3 62 2-65 40-105 (123)
180 1x4f_A Matrin 3; structural ge 99.5 1.5E-14 5E-19 74.4 4.6 60 2-67 43-104 (112)
181 3pgw_A U1-A; protein-RNA compl 99.5 1E-13 3.5E-18 80.2 8.4 62 2-66 30-91 (282)
182 3beg_B Splicing factor, argini 99.5 4.4E-14 1.5E-18 72.7 5.9 59 2-67 33-96 (115)
183 1wg1_A KIAA1579 protein, homol 99.5 1.3E-13 4.3E-18 67.9 7.0 58 2-66 22-79 (88)
184 3nmr_A Cugbp ELAV-like family 99.5 1.3E-13 4.5E-18 74.5 7.5 65 2-66 20-89 (175)
185 3u1l_A PRE-mRNA-splicing facto 99.5 1.1E-13 3.6E-18 79.2 6.3 60 2-67 160-231 (240)
186 3d2w_A TAR DNA-binding protein 99.5 3E-13 1E-17 66.8 7.1 57 2-67 28-86 (89)
187 2ghp_A U4/U6 snRNA-associated 99.5 1.8E-13 6E-18 79.5 7.1 66 2-68 134-200 (292)
188 2cjk_A Nuclear polyadenylated 99.5 1.3E-13 4.3E-18 74.2 6.0 63 2-66 20-82 (167)
189 2hgm_A HNRPF protein, heteroge 99.5 3.4E-14 1.2E-18 74.3 3.1 60 2-64 59-120 (126)
190 2dnl_A Cytoplasmic polyadenyla 99.4 2.2E-13 7.5E-18 69.9 5.5 58 2-62 25-85 (114)
191 1wf0_A TDP-43, TAR DNA-binding 99.4 1.8E-13 6.3E-18 67.2 4.8 63 2-71 22-84 (88)
192 3sde_A Paraspeckle component 1 99.4 1.2E-12 4E-17 75.3 8.0 65 2-67 113-181 (261)
193 3pgw_A U1-A; protein-RNA compl 99.4 1.1E-12 3.9E-17 75.8 7.7 58 1-63 223-281 (282)
194 3dxb_A Thioredoxin N-terminall 99.4 1.1E-12 3.9E-17 73.8 7.5 62 2-63 146-211 (222)
195 2dnr_A Synaptojanin-1; RRM dom 99.4 2.5E-12 8.6E-17 63.5 7.3 55 2-65 32-86 (91)
196 2adc_A Polypyrimidine tract-bi 99.4 8E-13 2.7E-17 74.7 6.3 59 2-65 52-110 (229)
197 2hzc_A Splicing factor U2AF 65 99.4 1.8E-12 6.2E-17 63.3 5.8 53 2-61 23-86 (87)
198 1qm9_A Polypyrimidine tract-bi 99.4 6.9E-13 2.4E-17 73.2 4.6 59 2-65 21-79 (198)
199 1fje_B Nucleolin RBD12, protei 99.4 1.7E-13 5.8E-18 74.3 1.6 64 2-67 30-93 (175)
200 1qm9_A Polypyrimidine tract-bi 99.3 1.3E-12 4.3E-17 72.2 4.2 59 2-65 137-197 (198)
201 2adc_A Polypyrimidine tract-bi 99.3 3.7E-12 1.3E-16 72.0 5.9 59 2-65 168-228 (229)
202 3sde_A Paraspeckle component 1 99.3 1.4E-11 5E-16 70.8 7.2 58 2-65 39-96 (261)
203 3tyt_A Heterogeneous nuclear r 99.3 6.4E-12 2.2E-16 70.3 5.3 59 2-62 140-204 (205)
204 1ufw_A Synaptojanin 2; RNP dom 99.2 2.1E-11 7.2E-16 60.5 4.7 54 2-64 41-94 (95)
205 2yh0_A Splicing factor U2AF 65 99.2 1.2E-10 4.2E-15 63.9 7.1 57 2-65 21-88 (198)
206 3tht_A Alkylated DNA repair pr 99.2 1E-10 3.5E-15 69.9 6.4 56 2-63 37-97 (345)
207 2g4b_A Splicing factor U2AF 65 99.1 2.3E-10 7.8E-15 61.6 6.8 58 2-66 21-89 (172)
208 1owx_A Lupus LA protein, SS-B, 98.7 4.6E-08 1.6E-12 50.7 5.2 55 2-62 36-93 (121)
209 2l9w_A U4/U6 snRNA-associated- 98.1 2.4E-05 8.2E-10 39.8 6.1 53 2-60 38-95 (117)
210 1wwh_A Nucleoporin 35, nucleop 97.7 0.0002 6.7E-09 36.9 6.3 55 2-63 40-95 (119)
211 2i2y_A Fusion protein consists 97.7 6.2E-05 2.1E-09 39.8 4.1 41 23-64 9-50 (150)
212 2kn4_A Immunoglobulin G-bindin 97.6 0.0002 6.7E-09 38.0 5.1 34 14-49 2-35 (158)
213 1wey_A Calcipressin 1; structu 97.4 0.0019 6.5E-08 32.5 7.2 60 2-67 27-86 (104)
214 3p3d_A Nucleoporin 53; structu 97.3 0.00027 9.1E-09 37.0 3.2 61 2-63 23-97 (132)
215 1whv_A Poly(A)-specific ribonu 96.2 0.016 5.4E-07 28.9 4.5 38 2-47 32-69 (100)
216 3ctr_A Poly(A)-specific ribonu 95.8 0.016 5.4E-07 28.9 3.6 39 2-48 22-60 (101)
217 2dhx_A Poly (ADP-ribose) polym 95.6 0.087 3E-06 26.5 6.4 57 2-67 25-86 (104)
218 3pq1_A Poly(A) RNA polymerase; 93.8 0.044 1.5E-06 34.3 2.6 40 2-46 69-108 (464)
219 3d45_A Poly(A)-specific ribonu 79.8 5 0.00017 25.5 5.0 40 2-49 456-495 (507)
220 2g0c_A ATP-dependent RNA helic 76.2 3.4 0.00012 18.9 2.8 34 29-63 42-75 (76)
221 2l08_A Regulator of nonsense t 68.1 9.3 0.00032 18.8 5.5 36 28-63 54-94 (97)
222 1uw4_A UPF3X; nonsense mediate 61.9 12 0.00042 18.1 8.9 60 4-63 20-86 (91)
223 2i9x_A Putative septation prot 50.3 21 0.00072 17.2 4.5 26 11-36 5-30 (87)
224 2ia9_A Putative septation prot 47.5 26 0.00087 17.4 4.5 26 11-36 5-30 (100)
225 3h7h_B Transcription elongatio 45.8 22 0.00074 17.7 2.6 26 25-50 49-74 (106)
226 2i9z_A Putative septation prot 44.4 30 0.001 17.3 4.5 26 11-36 5-30 (105)
227 3lpe_A Putative transcription 40.3 32 0.0011 16.4 3.0 25 26-50 49-73 (92)
228 4eyt_A Telomerase associated p 34.0 39 0.0013 16.5 2.3 33 28-60 47-86 (129)
229 2cu1_A Mitogen-activated prote 33.2 49 0.0017 16.5 2.9 50 9-67 41-90 (103)
230 2exu_A Transcription initiatio 30.6 65 0.0022 18.0 3.1 26 25-50 147-172 (200)
231 1ytr_A Bacteriocin plantaricin 29.1 19 0.00064 12.8 0.6 9 2-10 17-25 (26)
232 3p8b_B Transcription antitermi 26.6 75 0.0026 16.5 3.3 25 26-50 42-66 (152)
233 4e8u_A Putative uncharacterize 26.2 87 0.003 17.1 4.5 40 2-44 38-80 (172)
234 1wvf_A 4-cresol dehydrogenase 24.1 1.4E+02 0.0049 18.9 4.7 34 8-42 226-259 (520)
235 2k5n_A Putative cold-shock pro 23.5 31 0.0011 15.9 0.9 11 26-36 13-23 (74)
236 2kcm_A Cold shock domain famil 22.1 34 0.0012 15.7 0.9 11 26-36 11-21 (74)
237 3cam_A Cold-shock domain famil 22.0 35 0.0012 15.3 0.9 11 26-36 12-22 (67)
238 1c9o_A CSPB, cold-shock protei 21.8 35 0.0012 15.1 0.9 11 26-36 12-22 (66)
239 3a0j_A Cold shock protein; OB- 20.9 38 0.0013 15.4 0.9 11 26-36 12-22 (73)
240 1h95_A CSD, Y-box binding prot 20.0 40 0.0014 15.6 0.9 11 26-36 19-29 (79)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=8.9e-21 Score=95.78 Aligned_cols=64 Identities=36% Similarity=0.595 Sum_probs=61.5
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~ 65 (80)
|+++|++||+|.++.++.|+.++.++|||||+|.+.++|.+|++.||+..+.|+.|+|++++|.
T Consensus 36 L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkPS 99 (99)
T 4fxv_A 36 LRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPS 99 (99)
T ss_dssp HHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCBC
T ss_pred HHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeCC
Confidence 7899999999999999999999999999999999999999999999999999999999999763
No 2
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=1.8e-19 Score=92.54 Aligned_cols=66 Identities=14% Similarity=0.320 Sum_probs=62.6
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
|+++|++||.|.++.++.|+.+++++|||||+|.+.++|+.|++.||+..+.|+.|.|.++.....
T Consensus 23 L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~~~ 88 (110)
T 3s8s_A 23 LKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKGQQ 88 (110)
T ss_dssp HHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSTTHH
T ss_pred HHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCcH
Confidence 789999999999999999999999999999999999999999999999999999999999876544
No 3
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.81 E-value=7.7e-19 Score=85.71 Aligned_cols=65 Identities=29% Similarity=0.555 Sum_probs=62.2
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSR 66 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~ 66 (80)
|+++|++||.|.++.++.++.++.++|||||+|.+.++|..|+..||+..+.|+.|+|+++.++.
T Consensus 18 l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 82 (83)
T 3md1_A 18 LRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKLE 82 (83)
T ss_dssp HHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred HHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcCC
Confidence 78999999999999999998899999999999999999999999999999999999999998764
No 4
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.80 E-value=8e-19 Score=86.31 Aligned_cols=64 Identities=34% Similarity=0.604 Sum_probs=60.2
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~ 65 (80)
|+++|++||.|.++.++.++.++.++|||||+|.+.++|+.|+..||+..+.|+.|+|+++.++
T Consensus 23 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~k 86 (87)
T 3bs9_A 23 IAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 86 (87)
T ss_dssp HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC--
T ss_pred HHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCCC
Confidence 7899999999999999999889999999999999999999999999999999999999999875
No 5
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.2e-18 Score=88.23 Aligned_cols=69 Identities=26% Similarity=0.483 Sum_probs=64.4
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYNT 70 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~ 70 (80)
|+++|++||.|..+.++.++.++.++|||||+|.+.++|..|+..||+..+.|+.|.|.++.+...+.+
T Consensus 32 l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~ 100 (103)
T 2cq0_A 32 LQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTNSGP 100 (103)
T ss_dssp HHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCSCC
T ss_pred HHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCCCCCCC
Confidence 788999999999999999988999999999999999999999999999999999999999988776443
No 6
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=7.8e-19 Score=88.27 Aligned_cols=70 Identities=27% Similarity=0.445 Sum_probs=65.0
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYNTD 71 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~ 71 (80)
|+++|++||.|..+.++.++.++.++|||||+|.+.++|..|+..||+..+.|+.|.|.++.+.......
T Consensus 25 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~~ 94 (99)
T 1whw_A 25 LEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEASQS 94 (99)
T ss_dssp HHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCSTTCCC
T ss_pred HHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCcccccC
Confidence 7899999999999999999989999999999999999999999999999999999999999988765443
No 7
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.80 E-value=1.2e-18 Score=89.71 Aligned_cols=70 Identities=30% Similarity=0.433 Sum_probs=65.3
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYNTD 71 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~ 71 (80)
|+++|++||.|..+.++.++.++.++|||||+|.+.++|+.|+..||+..+.|+.|+|.++.++..+.+.
T Consensus 42 l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~~ 111 (115)
T 2cpz_A 42 LLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKSG 111 (115)
T ss_dssp HHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSCCCCCC
T ss_pred HHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCcCCCC
Confidence 7899999999999999999989999999999999999999999999999999999999999888765543
No 8
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.80 E-value=6.5e-20 Score=91.33 Aligned_cols=68 Identities=19% Similarity=0.335 Sum_probs=61.5
Q ss_pred HHHHhccCC-ceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhC-CeeecCEEEEEEecCCCCCCC
Q 035722 2 IADAFSQFG-QVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMN-GKLLDGRVLFVDNVRPSRRYN 69 (80)
Q Consensus 2 l~~~f~~~G-~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~-~~~~~~~~i~v~~~~~~~~~~ 69 (80)
|+++|++|| .|.++.+++|+.++.++|||||+|.+.++|.+|++.++ +..+.|+.|+|+++.|++...
T Consensus 18 l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~~~~~ 87 (91)
T 2lxi_A 18 IRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKPKIN 87 (91)
T ss_dssp HHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCSCCCCS
T ss_pred HHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCCCCCCC
Confidence 789999999 89999999999999999999999999999999998764 567999999999998876543
No 9
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6e-19 Score=89.11 Aligned_cols=71 Identities=30% Similarity=0.465 Sum_probs=65.8
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCCCCc
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYNTDV 72 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~ 72 (80)
|+++|++||.|..+.++.++.++.++|||||+|.+.++|..|+..||+..+.|+.|.|.++.+...+.+..
T Consensus 29 l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~~~ 99 (102)
T 2cqb_A 29 LHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRIKESGP 99 (102)
T ss_dssp HHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCCCCCC
T ss_pred HHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCCCCCCCC
Confidence 78999999999999999998899999999999999999999999999999999999999999887655543
No 10
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=2.1e-18 Score=86.84 Aligned_cols=66 Identities=17% Similarity=0.348 Sum_probs=62.5
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRY 68 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 68 (80)
|+++|++||.|..+.++.++ ++.++|||||+|.+.++|..|+..||+..+.|+.|.|.++.++..+
T Consensus 34 l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 99 (100)
T 2do4_A 34 LEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNSGPSS 99 (100)
T ss_dssp HHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCCCSCC
T ss_pred HHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCCC
Confidence 78999999999999999998 8999999999999999999999999999999999999999887754
No 11
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.79 E-value=3.4e-18 Score=87.96 Aligned_cols=68 Identities=31% Similarity=0.531 Sum_probs=63.9
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYN 69 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~ 69 (80)
|+++|.+||.|..+.++.++.++.++|||||+|.+.++|+.|+..||+..+.|+.|+|.++.+.....
T Consensus 32 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 99 (115)
T 2dgo_A 32 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAP 99 (115)
T ss_dssp HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCCS
T ss_pred HHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCCCCCC
Confidence 78999999999999999998899999999999999999999999999999999999999998776543
No 12
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1e-18 Score=87.19 Aligned_cols=70 Identities=33% Similarity=0.535 Sum_probs=65.4
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYNTD 71 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~ 71 (80)
|+++|++||.|..+.++.++.++.++|||||+|.+.++|..|+..||+..+.|+.|+|+++.++..+...
T Consensus 22 l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~~ 91 (95)
T 2dnz_A 22 LRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGGSG 91 (95)
T ss_dssp HHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCCCCCCC
T ss_pred HHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccccCCCCC
Confidence 7899999999999999999989999999999999999999999999999999999999999888765543
No 13
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.79 E-value=9.7e-20 Score=90.39 Aligned_cols=67 Identities=16% Similarity=0.309 Sum_probs=58.4
Q ss_pred HHHHhccCC--ceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCC
Q 035722 2 IADAFSQFG--QVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRY 68 (80)
Q Consensus 2 l~~~f~~~G--~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 68 (80)
|+++|++|| .|.++.++.++.++.++|||||+|.+.++|+.|++.||+..+.|+.|+|.++.+....
T Consensus 18 l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~~~ 86 (90)
T 3p5t_L 18 LTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKLEHH 86 (90)
T ss_dssp HHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC------
T ss_pred HHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCCccc
Confidence 789999999 9999999999999999999999999999999999999999999999999999877643
No 14
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.4e-18 Score=87.38 Aligned_cols=69 Identities=26% Similarity=0.496 Sum_probs=64.1
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYNTD 71 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~ 71 (80)
|+++|++||.|..+.++.++.++.++|||||+|.+.++|..|+. +++..+.|+.|.|.++.++....+.
T Consensus 27 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~~~~~~~ 95 (99)
T 2dgs_A 27 LREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRDSKSSG 95 (99)
T ss_dssp HHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCCCCCCCCC
T ss_pred HHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCCCcccCCC
Confidence 78999999999999999999899999999999999999999999 9999999999999999988765543
No 15
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.79 E-value=1.9e-19 Score=90.90 Aligned_cols=65 Identities=25% Similarity=0.421 Sum_probs=61.7
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecC-EEEEEEecCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDG-RVLFVDNVRPSR 66 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~-~~i~v~~~~~~~ 66 (80)
|+++|++||.|.++.++.++.+++++|||||+|.+.++|..|+..||+..+.| +.|.|.++.+..
T Consensus 29 L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~~~ 94 (100)
T 3ns6_A 29 LTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKDVE 94 (100)
T ss_dssp HHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHHHH
T ss_pred HHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECchhh
Confidence 78999999999999999999999999999999999999999999999999999 999999987653
No 16
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.7e-18 Score=86.13 Aligned_cols=70 Identities=30% Similarity=0.445 Sum_probs=63.7
Q ss_pred HHHHhccCCceeEEEEeecCC---CCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKG---KNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYNTD 71 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~---~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~ 71 (80)
|+++|++||.|..+.++.++. ++.++|||||+|.+.++|..|+..||+..+.|+.|.|.++.+.....+.
T Consensus 22 l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~~ 94 (98)
T 2cpf_A 22 LKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPASG 94 (98)
T ss_dssp HHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSCSSCCCCC
T ss_pred HHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccCCCCCCCC
Confidence 789999999999999998875 6689999999999999999999999999999999999999887765544
No 17
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6e-18 Score=84.33 Aligned_cols=63 Identities=29% Similarity=0.550 Sum_probs=60.5
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~ 64 (80)
|+++|++||.|..+.++.++.++.++|||||+|.+.++|..|+..||+..+.|+.|.|+++++
T Consensus 32 l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 32 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPSS 94 (95)
T ss_dssp HHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCSC
T ss_pred HHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecCC
Confidence 789999999999999999998999999999999999999999999999999999999999875
No 18
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.78 E-value=2.6e-18 Score=85.99 Aligned_cols=67 Identities=28% Similarity=0.376 Sum_probs=63.2
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRY 68 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 68 (80)
|+++|++||.|.++.++.++.++.++|||||+|.+.++|..|+..+|+..+.|+.|.|.++.++...
T Consensus 19 l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 85 (96)
T 2x1f_A 19 ILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSDIS 85 (96)
T ss_dssp HHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSSGG
T ss_pred HHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCCCC
Confidence 7899999999999999999889999999999999999999999999999999999999999887643
No 19
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-18 Score=86.83 Aligned_cols=68 Identities=28% Similarity=0.466 Sum_probs=63.8
Q ss_pred HHHHhccCCceeEE-EEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCC
Q 035722 2 IADAFSQFGQVTKA-TIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYN 69 (80)
Q Consensus 2 l~~~f~~~G~i~~~-~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~ 69 (80)
|+++|++||.|..+ .++.++.++.++|||||+|.+.++|+.|+..||+..+.|+.|.|.++.++..+.
T Consensus 22 l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 90 (96)
T 1x5t_A 22 LYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG 90 (96)
T ss_dssp HHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCCCCC
T ss_pred HHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecccCCCC
Confidence 78999999999999 999998899999999999999999999999999999999999999998876544
No 20
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.8e-18 Score=87.83 Aligned_cols=66 Identities=30% Similarity=0.462 Sum_probs=62.4
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
|+++|++||.|..+.++.++.++.++|||||+|.+.++|+.|+..||+..+.|+.|.|.++.+...
T Consensus 40 l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 105 (106)
T 1p27_B 40 IHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGP 105 (106)
T ss_dssp HHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEESSC
T ss_pred HHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecCCCC
Confidence 789999999999999999998999999999999999999999999999999999999999977653
No 21
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=3.9e-18 Score=87.18 Aligned_cols=69 Identities=30% Similarity=0.459 Sum_probs=64.5
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhC------CeeecCEEEEEEecCCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMN------GKLLDGRVLFVDNVRPSRRYNT 70 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~------~~~~~~~~i~v~~~~~~~~~~~ 70 (80)
|+++|.+||.|..|.++.++.++.++|||||+|.+.++|..|+..+| +..+.|+.|.|.++.++.....
T Consensus 32 l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~~~~~~ 106 (111)
T 1x4h_A 32 LGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDEAAS 106 (111)
T ss_dssp HHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCCCCCC
T ss_pred HHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCCccCCC
Confidence 78999999999999999999899999999999999999999999999 9999999999999988766544
No 22
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.77 E-value=2.5e-18 Score=87.90 Aligned_cols=66 Identities=26% Similarity=0.440 Sum_probs=62.6
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
|+++|++||.|..+.++.++.++.++|||||+|.+.++|..|+..||+..+.|+.|.|.++.+...
T Consensus 43 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 108 (110)
T 1oo0_B 43 IQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 108 (110)
T ss_dssp HHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEESSC
T ss_pred HHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcccCCC
Confidence 789999999999999999988999999999999999999999999999999999999999987654
No 23
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.77 E-value=2.9e-18 Score=83.96 Aligned_cols=62 Identities=31% Similarity=0.494 Sum_probs=59.3
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~ 63 (80)
|+++|++||.|..+.++.++.++.++|||||+|.+.++|..|++.||+..+.|+.|+|++++
T Consensus 24 l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 24 LHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp HHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 78999999999999999998899999999999999999999999999999999999999874
No 24
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.77 E-value=5.6e-19 Score=88.61 Aligned_cols=63 Identities=25% Similarity=0.433 Sum_probs=58.4
Q ss_pred HHHHhccCCc--eeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCe----eecCEEEEEEecCC
Q 035722 2 IADAFSQFGQ--VTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGK----LLDGRVLFVDNVRP 64 (80)
Q Consensus 2 l~~~f~~~G~--i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~----~~~~~~i~v~~~~~ 64 (80)
|+++|++||. +.+|.+++|+.++.++|||||+|.+.++|..|++.+|+. .++|+.|.|++|++
T Consensus 26 L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 26 IMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp HHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred HHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence 7899999995 678999999999999999999999999999999999986 59999999999875
No 25
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.77 E-value=6.3e-18 Score=87.18 Aligned_cols=66 Identities=39% Similarity=0.731 Sum_probs=59.6
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYN 69 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~ 69 (80)
|+++|++||.|.++.++.++ +.++|||||+|.+.++|+.|+..|++..+.|+.|.|.++.++..+.
T Consensus 22 L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~~ 87 (115)
T 4f25_A 22 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 87 (115)
T ss_dssp HHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC--
T ss_pred HHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCccccc
Confidence 78999999999999999986 4589999999999999999999999999999999999998766543
No 26
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=87.95 Aligned_cols=69 Identities=30% Similarity=0.468 Sum_probs=64.2
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYNT 70 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~ 70 (80)
|+++|++||.|..+.++.++.++.++|||||+|.+.++|+.|+..||+..+.|+.|.|.++.+.....+
T Consensus 30 l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 98 (103)
T 2dnm_A 30 LRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGRRDLS 98 (103)
T ss_dssp HHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSCCSCCC
T ss_pred HHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcCCCCCC
Confidence 789999999999999999998999999999999999999999999999999999999999987765443
No 27
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.77 E-value=7.1e-18 Score=83.19 Aligned_cols=64 Identities=30% Similarity=0.501 Sum_probs=60.6
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSR 66 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~ 66 (80)
|+++|++||.|..+.++.++.++.++|||||+|.+.++|+.|+ .+|+..+.|+.|+|.++.+..
T Consensus 23 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~~~ 86 (89)
T 3ucg_A 23 LEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRTNR 86 (89)
T ss_dssp HHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTTTS
T ss_pred HHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccCCC
Confidence 7899999999999999999889999999999999999999999 899999999999999987754
No 28
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=1.6e-17 Score=84.05 Aligned_cols=68 Identities=25% Similarity=0.427 Sum_probs=62.6
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYNTD 71 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~ 71 (80)
|+++|++|| |..+.++.++.++.++|||||+|.+.++|+.|+ .||+..+.|+.|.|.++.+.......
T Consensus 32 l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~~~~ 99 (103)
T 2dng_A 32 IDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEGRKQDKSG 99 (103)
T ss_dssp HHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCCCCCCCSS
T ss_pred HHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecCCCCCCCC
Confidence 789999997 999999999989999999999999999999999 79999999999999999887765443
No 29
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.76 E-value=6.1e-18 Score=89.51 Aligned_cols=69 Identities=25% Similarity=0.442 Sum_probs=64.6
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYNT 70 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~ 70 (80)
|+++|++||.|..+.++.++.++.++|||||+|.+.++|..|+..||+..+.|+.|+|.++.+...+.+
T Consensus 59 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~ 127 (139)
T 1u6f_A 59 LRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQRPG 127 (139)
T ss_dssp HHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCCCCCC
T ss_pred HHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCCC
Confidence 789999999999999999998999999999999999999999999999999999999999988766543
No 30
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.76 E-value=3.3e-18 Score=84.20 Aligned_cols=66 Identities=30% Similarity=0.530 Sum_probs=61.2
Q ss_pred HHHHhccCCceeEEEEeecCCCCC-eeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNT-SKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~-~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
|+++|++||.|..+.++.++.++. ++|||||+|.+.++|..|+..||+..+.|+.|.|+++.++..
T Consensus 21 l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 87 (88)
T 4a8x_A 21 IMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPWP 87 (88)
T ss_dssp HHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECCCCC
T ss_pred HHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCCCCC
Confidence 789999999999999999987666 899999999999999999999999999999999999987654
No 31
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.76 E-value=3.5e-18 Score=87.34 Aligned_cols=65 Identities=38% Similarity=0.620 Sum_probs=61.9
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSR 66 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~ 66 (80)
|+++|++||.|..+.++.++.++.++|||||+|.+.++|..|+..+++..+.|+.|+|+++.++.
T Consensus 43 l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k~ 107 (108)
T 2jrs_A 43 LRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERT 107 (108)
T ss_dssp HHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSSC
T ss_pred HHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccCC
Confidence 78999999999999999999899999999999999999999999999999999999999998764
No 32
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5e-18 Score=87.11 Aligned_cols=70 Identities=30% Similarity=0.405 Sum_probs=64.7
Q ss_pred HHHHhccCCcee--------EEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCCCC
Q 035722 2 IADAFSQFGQVT--------KATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYNTD 71 (80)
Q Consensus 2 l~~~f~~~G~i~--------~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~ 71 (80)
|+++|++||.|. .+.++.++.++.++|||||+|.+.++|..|+..||+..+.|+.|+|.++.+.....+.
T Consensus 32 l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~~~ 109 (113)
T 2cpe_A 32 LADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNSG 109 (113)
T ss_dssp HHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSCCCCSTTC
T ss_pred HHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCCCCCCCCC
Confidence 789999999999 6999999889999999999999999999999999999999999999999988765544
No 33
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.6e-18 Score=87.56 Aligned_cols=70 Identities=33% Similarity=0.637 Sum_probs=64.8
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYNTD 71 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~ 71 (80)
|+++|++||.|..+.++.++.++.++|||||+|.+.++|..|++.||+..+.|+.|+|.++.+.....+.
T Consensus 29 l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~ 98 (102)
T 1x5s_A 29 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSG 98 (102)
T ss_dssp HHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCCCCCCC
T ss_pred HHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCCCC
Confidence 7899999999999999999889999999999999999999999999999999999999999887765443
No 34
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=7.3e-18 Score=83.94 Aligned_cols=62 Identities=34% Similarity=0.474 Sum_probs=59.4
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~ 63 (80)
|+++|++||.|..+.++.++.++.++|||||+|.+.++|..|++.||+..+.|+.|+|++++
T Consensus 33 l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 33 LYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp HHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred HHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence 78999999999999999999889999999999999999999999999999999999999974
No 35
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.6e-18 Score=87.14 Aligned_cols=68 Identities=26% Similarity=0.369 Sum_probs=63.9
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYN 69 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~ 69 (80)
|+++|++||.|..+.++.++.++.++|||||+|.+.++|..|+..||+..+.|+.|.|.++.+.....
T Consensus 32 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 99 (105)
T 1x5u_A 32 LWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHNKNL 99 (105)
T ss_dssp HHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTSCCC
T ss_pred HHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCcCC
Confidence 78999999999999999999899999999999999999999999999999999999999998876543
No 36
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.76 E-value=2.8e-18 Score=92.42 Aligned_cols=69 Identities=30% Similarity=0.528 Sum_probs=64.3
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYNT 70 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~ 70 (80)
|+++|++||.|..+.++.++.++.++|||||+|.+.++|..|+..||+..+.|+.|+|.++.+...+.+
T Consensus 87 l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~ 155 (158)
T 2kn4_A 87 LRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDS 155 (158)
T ss_dssp HHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCCCC
T ss_pred HHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCCC
Confidence 789999999999999999988999999999999999999999999999999999999999988765443
No 37
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.76 E-value=2.6e-18 Score=90.27 Aligned_cols=66 Identities=30% Similarity=0.540 Sum_probs=62.7
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
|+++|++||+|..+.++.++.++.++|||||+|.+.++|+.|+..||+..+.|+.|.|+++.++.+
T Consensus 63 L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~~p 128 (129)
T 2kxn_B 63 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRP 128 (129)
T ss_dssp HHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSSSSC
T ss_pred HHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 789999999999999999998999999999999999999999999999999999999999987664
No 38
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3.7e-17 Score=83.92 Aligned_cols=67 Identities=34% Similarity=0.478 Sum_probs=61.5
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYN 69 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~ 69 (80)
|+++|.+||.|..+.++.++ ++.++|||||+|.+.++|+.|+..||+..+.|+.|.|+++.+...+.
T Consensus 32 l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 98 (114)
T 2do0_A 32 LKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKG 98 (114)
T ss_dssp HHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCCCCCS
T ss_pred HHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcccCCCCC
Confidence 78999999999999999998 69999999999999999999999999999999999999997654433
No 39
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=7.5e-18 Score=85.48 Aligned_cols=68 Identities=29% Similarity=0.461 Sum_probs=63.5
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYNT 70 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~ 70 (80)
|+++|.+||.|..+.++.++.++.++|||||+|.+.++|+.|+.. ++..+.|+.|.|.++.++....+
T Consensus 33 l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~~~~~~~~ 100 (105)
T 2dh8_A 33 LRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCTPRGMQPS 100 (105)
T ss_dssp HHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSCCSSCCTT
T ss_pred HHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEccCCCCCCC
Confidence 789999999999999999988999999999999999999999998 99999999999999988876544
No 40
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.76 E-value=2e-17 Score=89.07 Aligned_cols=67 Identities=28% Similarity=0.390 Sum_probs=63.2
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRY 68 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 68 (80)
|+++|++||.|..|.++.++.++.++|||||+|.+.++|+.|+..||+..+.|+.|.|+++.+....
T Consensus 56 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 122 (156)
T 1h2v_Z 56 IYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEG 122 (156)
T ss_dssp HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCCCTT
T ss_pred HHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCc
Confidence 7899999999999999999989999999999999999999999999999999999999999876543
No 41
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.2e-17 Score=84.52 Aligned_cols=68 Identities=40% Similarity=0.674 Sum_probs=62.8
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYNTD 71 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~ 71 (80)
|+++|++||.|..+.++.+ ++.++|||||+|.+.++|..|+..||+..+.|+.|.|.++.+...+...
T Consensus 32 l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~~ 99 (103)
T 2d9p_A 32 LRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQSG 99 (103)
T ss_dssp HHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCCCCCCC
T ss_pred HHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecccccCCCC
Confidence 7899999999999999988 7899999999999999999999999999999999999999888765443
No 42
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.75 E-value=8e-18 Score=90.92 Aligned_cols=64 Identities=23% Similarity=0.419 Sum_probs=61.3
Q ss_pred HHHHhccCC--ceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCC
Q 035722 2 IADAFSQFG--QVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65 (80)
Q Consensus 2 l~~~f~~~G--~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~ 65 (80)
|+++|++|| .|.++.++.|+.+|.++|||||+|.+.++|+.|+..||+..+.|+.|.|.++.+.
T Consensus 72 L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~~ 137 (156)
T 3n9u_C 72 LIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQ 137 (156)
T ss_dssp HHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCHH
T ss_pred HHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCCC
Confidence 789999999 9999999999999999999999999999999999999999999999999998764
No 43
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1e-17 Score=83.93 Aligned_cols=64 Identities=13% Similarity=0.189 Sum_probs=58.4
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRY 68 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 68 (80)
|+++|++||.|.++.++.++.+ +|||||+|.+.++|+.|+..+|+..+.|+.|+|+++.+....
T Consensus 30 l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~~~~ 93 (96)
T 2dgx_A 30 LQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATGASGP 93 (96)
T ss_dssp HHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCSSCC
T ss_pred HHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCCC
Confidence 4599999999999999998755 889999999999999999999999999999999999877643
No 44
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.75 E-value=2.8e-18 Score=87.15 Aligned_cols=71 Identities=21% Similarity=0.318 Sum_probs=65.1
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeee---cCEEEEEEecCCCCCCCCCc
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLL---DGRVLFVDNVRPSRRYNTDV 72 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~---~~~~i~v~~~~~~~~~~~~~ 72 (80)
|+++|++||.|..+.++.++.++.++|||||+|.+.++|..|+..||+..+ .|+.|.|.++.+...+.+..
T Consensus 30 l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~~~~~~ 103 (106)
T 2dgp_A 30 LKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSGP 103 (106)
T ss_dssp HHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCSCCCCCC
T ss_pred HHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCcccccCCCC
Confidence 789999999999999999998999999999999999999999999999987 88999999999887655443
No 45
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.75 E-value=1.4e-17 Score=84.39 Aligned_cols=67 Identities=25% Similarity=0.393 Sum_probs=62.4
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecC---EEEEEEecCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDG---RVLFVDNVRPSRRYN 69 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~---~~i~v~~~~~~~~~~ 69 (80)
|+++|++||.|..+.++.++ ++.++|||||+|.+.++|..|+..||+..+.| +.|.|.++.+...+.
T Consensus 32 l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~~~~ 101 (105)
T 2dnh_A 32 VLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKESG 101 (105)
T ss_dssp HHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSSCCCS
T ss_pred HHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECccCcccC
Confidence 78999999999999999998 79999999999999999999999999999998 999999998877544
No 46
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=7.6e-18 Score=85.61 Aligned_cols=69 Identities=26% Similarity=0.496 Sum_probs=64.0
Q ss_pred HHHHhccCCceeEEEEeec-CCCCCeeeEEEEEECCHHHHHHHHHhh-CCeeecCEEEEEEecCCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMD-KGKNTSKGYGSVTFSTEEEAQKALTEM-NGKLLDGRVLFVDNVRPSRRYNT 70 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~-~~~~~~~g~~~v~f~~~~~~~~a~~~l-~~~~~~~~~i~v~~~~~~~~~~~ 70 (80)
|+++|++||.|..+.++.+ +.++.++|||||+|.+.++|..|+..| |+..+.|+.|.|.++.+......
T Consensus 32 l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~~~~~ 102 (107)
T 2cph_A 32 IRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVTVQS 102 (107)
T ss_dssp HHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCCCCCC
T ss_pred HHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCCCCCCC
Confidence 7899999999999999998 788999999999999999999999999 99999999999999988766443
No 47
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=7.3e-18 Score=84.68 Aligned_cols=66 Identities=29% Similarity=0.428 Sum_probs=62.2
Q ss_pred HHHHhccCCcee-EEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEE----EEEEecCCCCC
Q 035722 2 IADAFSQFGQVT-KATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRV----LFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~-~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~----i~v~~~~~~~~ 67 (80)
|+++|++||.|. ++.++.++.++.++|||||+|.+.++|+.|+..||+..+.|+. |+|.++.+...
T Consensus 26 l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~~~ 96 (99)
T 2div_A 26 ISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYSGP 96 (99)
T ss_dssp HHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTCCSS
T ss_pred HHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCCCCC
Confidence 789999999999 9999999989999999999999999999999999999999998 99999987654
No 48
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.75 E-value=8.6e-18 Score=86.84 Aligned_cols=65 Identities=26% Similarity=0.562 Sum_probs=61.4
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
|+++|++||.|..+.++.++ ++.++|||||+|.+.++|+.|+..||+..+.|+.|.|.++.+...
T Consensus 24 l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 88 (116)
T 2fy1_A 24 LKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSF 88 (116)
T ss_dssp HHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSSC
T ss_pred HHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence 78999999999999999998 899999999999999999999999999999999999999987654
No 49
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.75 E-value=4.1e-17 Score=84.86 Aligned_cols=65 Identities=26% Similarity=0.451 Sum_probs=61.2
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
|+++|++||.|.++.++.++.++.++|||||+|.+.+++..|+ .+|+..+.|+.|.|.++.+...
T Consensus 53 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~ 117 (124)
T 2jwn_A 53 LEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRTNMP 117 (124)
T ss_dssp HHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSCCCS
T ss_pred HHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCCCCC
Confidence 7899999999999999999889999999999999999999999 6999999999999999986654
No 50
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.4e-17 Score=84.91 Aligned_cols=68 Identities=25% Similarity=0.475 Sum_probs=63.4
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYNT 70 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~ 70 (80)
|+++|.+||.|..+.++.++.++.++|||||+|.+.++|+.|+.. ++..+.|+.|.|.++.++....+
T Consensus 44 l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~~~~~~~ 111 (116)
T 1x4b_A 44 LRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAREESGS 111 (116)
T ss_dssp HHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSSCCCCCC
T ss_pred HHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCCCccCCC
Confidence 789999999999999999998999999999999999999999997 99999999999999988876543
No 51
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.75 E-value=1e-17 Score=84.24 Aligned_cols=62 Identities=26% Similarity=0.414 Sum_probs=59.3
Q ss_pred HHHHhccCCceeE--------EEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecC
Q 035722 2 IADAFSQFGQVTK--------ATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63 (80)
Q Consensus 2 l~~~f~~~G~i~~--------~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~ 63 (80)
|+++|++||.|.. +.++.++.++.++|||||+|.+.++|+.|++.||+..+.|+.|+|++++
T Consensus 30 l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 30 VADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp HHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEecC
Confidence 7899999999999 9999999899999999999999999999999999999999999999874
No 52
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.9e-17 Score=83.86 Aligned_cols=67 Identities=18% Similarity=0.333 Sum_probs=62.2
Q ss_pred HHHHhccCCceeEEEEeecCCC-CCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGK-NTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYNT 70 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~-~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~ 70 (80)
|+++|++|| |..+.++.++.+ +.++|||||+|.+.++|+.|+ .+|+..+.|+.|.|.++.++..+.+
T Consensus 32 l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~~~ 99 (104)
T 1wi8_A 32 IKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQAQDKDS 99 (104)
T ss_dssp HHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCCCCCCCC
T ss_pred HHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccCCCCCCC
Confidence 789999999 999999999877 899999999999999999999 8999999999999999998876544
No 53
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.75 E-value=2.2e-17 Score=84.45 Aligned_cols=66 Identities=27% Similarity=0.447 Sum_probs=61.3
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRY 68 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 68 (80)
|+++|++||.|.++.++.++.++.++|||||+|.+.++|..|+..+ +..+.|+.|.|.++.++..+
T Consensus 42 L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a~~~~~~ 107 (109)
T 2rs2_A 42 LREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVAFPRRAQ 107 (109)
T ss_dssp HHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEECCCCCCC
T ss_pred HHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEccCCCCC
Confidence 7899999999999999999989999999999999999999999975 59999999999999887654
No 54
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.75 E-value=2.9e-17 Score=83.47 Aligned_cols=61 Identities=34% Similarity=0.571 Sum_probs=58.8
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~ 63 (80)
|+++|.+||.|..+.++.++ ++.++|||||+|.+.++|..|+..||+..+.|+.|.|+++.
T Consensus 46 l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 46 IQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp HHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 78999999999999999999 99999999999999999999999999999999999999985
No 55
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.74 E-value=1.8e-17 Score=90.03 Aligned_cols=68 Identities=25% Similarity=0.418 Sum_probs=62.3
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYN 69 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~ 69 (80)
|+.+|++||.|..|.++.++.++.++|||||+|.+.++|..|+..||+..+.|+.|.|.++.+.....
T Consensus 89 L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 89 IQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 78999999999999999998899999999999999999999999999999999999999998766543
No 56
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7e-18 Score=85.37 Aligned_cols=67 Identities=31% Similarity=0.584 Sum_probs=63.2
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRY 68 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 68 (80)
|+++|++||.|..+.++.++.++.++|||||+|.+.++|..|+..+|+..+.|+.|.|.++.+....
T Consensus 25 l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 91 (104)
T 1p1t_A 25 LKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNK 91 (104)
T ss_dssp HHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTTHH
T ss_pred HHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCccch
Confidence 7899999999999999999889999999999999999999999999999999999999999887653
No 57
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.74 E-value=2.8e-17 Score=85.59 Aligned_cols=69 Identities=29% Similarity=0.465 Sum_probs=63.6
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYNTD 71 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~ 71 (80)
|+++|++||.|..+.+..++ ++.++|||||+|.+.++|..|+..+|+..+.|+.|+|+++.+.....+.
T Consensus 52 l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~~~ 120 (124)
T 2kt5_A 52 IQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQIDLEHH 120 (124)
T ss_dssp HHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCTTCCCCC
T ss_pred HHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCCCCC
Confidence 78999999999999999998 8999999999999999999999999999999999999999887654443
No 58
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.74 E-value=3.2e-17 Score=83.51 Aligned_cols=63 Identities=24% Similarity=0.315 Sum_probs=58.4
Q ss_pred HHHHhccCCceeEEEEeecCCC-CCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGK-NTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~-~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~ 64 (80)
|++.|++||.|.++.++.++.+ +.++||+||+|.+.++|..|+..|||..+.|+.|.|.++.+
T Consensus 30 l~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 30 TKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp HHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred HHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 6889999999999999998643 68899999999999999999999999999999999999864
No 59
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.9e-17 Score=81.89 Aligned_cols=68 Identities=31% Similarity=0.590 Sum_probs=61.5
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYNTD 71 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~ 71 (80)
|+++|++||.|..+.++.++. .++|||||+|.+.++|..|+..||+..+.|+.|.|.++.++......
T Consensus 32 l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~ 99 (103)
T 2cq3_A 32 LRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNSG 99 (103)
T ss_dssp HHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSCCCCCS
T ss_pred HHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCCCCCCC
Confidence 789999999999999998863 38999999999999999999999999999999999999888765543
No 60
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.5e-17 Score=84.88 Aligned_cols=65 Identities=29% Similarity=0.516 Sum_probs=60.7
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
|+++|++||.|..+.++.++.++.++|||||+|.+.++|+.|+..+++ .+.|+.|.|.++.+...
T Consensus 34 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~~~~ 98 (116)
T 2cqd_A 34 LRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAYLGAK 98 (116)
T ss_dssp HHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEESTTTCC
T ss_pred HHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcccCCC
Confidence 789999999999999999998999999999999999999999999998 89999999999976543
No 61
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.74 E-value=3.6e-17 Score=81.55 Aligned_cols=62 Identities=32% Similarity=0.440 Sum_probs=58.7
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~ 64 (80)
|+++|++||+|..+.++.++. +.++|||||+|.+.++|..|+..||+..+.|+.|.|++++.
T Consensus 33 l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (95)
T 2ywk_A 33 LYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPSS 94 (95)
T ss_dssp HHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred HHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcCC
Confidence 789999999999999999985 89999999999999999999999999999999999999864
No 62
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.1e-17 Score=82.11 Aligned_cols=68 Identities=25% Similarity=0.378 Sum_probs=60.9
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYNTD 71 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~ 71 (80)
|+++|++||.|..+.++.++.+ ++|||||+|.+.++|..|+..||+..+.|+.|.|.++.++..+.+.
T Consensus 32 l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~~ 99 (103)
T 2cqi_A 32 ILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKSG 99 (103)
T ss_dssp HHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTTCCCCC
T ss_pred HHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCCcccccC
Confidence 7899999999999999998633 6899999999999999999999999999999999999887654443
No 63
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=83.74 Aligned_cols=65 Identities=18% Similarity=0.257 Sum_probs=60.8
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSR 66 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~ 66 (80)
|+++|.+||.|..+.++.++.++.++|||||+|.+.++|+.|++.+|+..+.|+.|+|+++..+.
T Consensus 32 l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (98)
T 2cqp_A 32 ILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGPS 96 (98)
T ss_dssp HHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCSS
T ss_pred HHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCCC
Confidence 78999999999988888888899999999999999999999999999999999999999987654
No 64
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=7.2e-17 Score=82.71 Aligned_cols=64 Identities=23% Similarity=0.318 Sum_probs=58.6
Q ss_pred HHhccCCceeEEEEeecCCCC---CeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 4 DAFSQFGQVTKATIIMDKGKN---TSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 4 ~~f~~~G~i~~~~~~~~~~~~---~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
++|++||+|..+.++.++.++ .++|||||+|.+.++|+.|+..||+..+.|+.|+|.++.++..
T Consensus 37 ~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~~ 103 (111)
T 2cpi_A 37 EYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKYC 103 (111)
T ss_dssp TTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCCCSC
T ss_pred HHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEecccccc
Confidence 899999999999999887644 4569999999999999999999999999999999999988764
No 65
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-16 Score=80.39 Aligned_cols=67 Identities=25% Similarity=0.408 Sum_probs=61.4
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYNT 70 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~ 70 (80)
|+++|.+||.|..+.++.++.++.++|||||+|.+.++|..|+. +++.+.|+.|.|.++.++....+
T Consensus 32 l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a~~~~~~~~ 98 (103)
T 2cqg_A 32 LKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLPNSKQSQDS 98 (103)
T ss_dssp HHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECCCTTCCCCC
T ss_pred HHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEecCCCCcCCC
Confidence 78999999999999999999899999999999999999999998 47899999999999988765443
No 66
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=84.31 Aligned_cols=68 Identities=26% Similarity=0.473 Sum_probs=63.1
Q ss_pred HHHHhcc-CCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCee-ecCEEEEEEecCCCCCCCC
Q 035722 2 IADAFSQ-FGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKL-LDGRVLFVDNVRPSRRYNT 70 (80)
Q Consensus 2 l~~~f~~-~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~-~~~~~i~v~~~~~~~~~~~ 70 (80)
|+++|++ ||.|..+.++.++ ++.++|||||+|.+.++|..|+..+++.. +.|+.|.|.++.+...+..
T Consensus 26 l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~~~~~~ 95 (104)
T 2dhg_A 26 LYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRVK 95 (104)
T ss_dssp HHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCCCSCCC
T ss_pred HHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccCCCcCCC
Confidence 7899999 9999999999999 99999999999999999999999999999 9999999999987765443
No 67
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.4e-18 Score=87.93 Aligned_cols=66 Identities=27% Similarity=0.426 Sum_probs=61.7
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRY 68 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 68 (80)
|+++|++||.|..+.++.++.++.++|||||+|.+.++|+.|+ .+|+..+.|+.|.|.++.+...+
T Consensus 42 l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~ 107 (114)
T 2cq4_A 42 LEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAEKNR 107 (114)
T ss_dssp HHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHHHHHH
T ss_pred HHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCCCccC
Confidence 7899999999999999999988999999999999999999999 89999999999999999876543
No 68
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.73 E-value=9.5e-18 Score=87.49 Aligned_cols=66 Identities=30% Similarity=0.462 Sum_probs=62.3
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
|+++|++||.|..+.++.++.++.++|||||+|.+.++|+.|+..||+..+.|+.|.|.++.+...
T Consensus 39 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 104 (126)
T 3ex7_B 39 IHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGP 104 (126)
T ss_dssp HHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEESSS
T ss_pred HHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCC
Confidence 789999999999999999988999999999999999999999999999999999999999976654
No 69
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.73 E-value=1.4e-17 Score=86.04 Aligned_cols=62 Identities=34% Similarity=0.509 Sum_probs=58.9
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~ 63 (80)
|+++|++||.|.++.++.++.++.++|||||+|.+.++++.|++.||+..+.|+.|+|++++
T Consensus 57 l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ak 118 (118)
T 2khc_A 57 LASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLKK 118 (118)
T ss_dssp HHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC-
T ss_pred HHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 78999999999999999998899999999999999999999999999999999999999874
No 70
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.73 E-value=9.2e-17 Score=78.95 Aligned_cols=60 Identities=33% Similarity=0.586 Sum_probs=56.6
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEec
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV 62 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~ 62 (80)
|+++|++||.|..+.++.++.++.++|||||+|.+.++|+.|++ +++..+.|+.|.|++|
T Consensus 28 l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 28 LKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp HHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred HHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 78999999999999999999899999999999999999999997 5888999999999875
No 71
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.72 E-value=4.6e-17 Score=82.78 Aligned_cols=61 Identities=20% Similarity=0.393 Sum_probs=55.7
Q ss_pred HHHHh-ccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecC
Q 035722 2 IADAF-SQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63 (80)
Q Consensus 2 l~~~f-~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~ 63 (80)
|+..| ++||+|.++.++.+. +++++|||||.|.+.++|.+|+..|||..+.|+.|.|.++.
T Consensus 43 l~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~sp 104 (104)
T 1jmt_A 43 VFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSP 104 (104)
T ss_dssp HHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEECC
T ss_pred HHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEcC
Confidence 45667 999999999999887 47899999999999999999999999999999999999863
No 72
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.72 E-value=4.8e-17 Score=80.66 Aligned_cols=65 Identities=37% Similarity=0.479 Sum_probs=60.3
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRY 68 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 68 (80)
|+++|++||.|..+.+..+ ++.++|||||+|.+.++|+.|+..||+..+.|+.|+|+++.+....
T Consensus 25 l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~ 89 (92)
T 2dgv_A 25 LKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNASGP 89 (92)
T ss_dssp HHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCCSSC
T ss_pred HHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCCCC
Confidence 7899999999999999874 7889999999999999999999999999999999999999887654
No 73
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.6e-16 Score=78.70 Aligned_cols=63 Identities=24% Similarity=0.378 Sum_probs=59.3
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
|+++|++| .|..+.++.+ .++.++|||||+|.+.+++..|+. +|+..+.|+.|.|.++.+.+.
T Consensus 27 l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~~~~ 89 (91)
T 2dgw_A 27 VMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKSGPS 89 (91)
T ss_dssp HHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESSCCC
T ss_pred HHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCcCCC
Confidence 78999999 9999999999 689999999999999999999999 999999999999999988754
No 74
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.72 E-value=2.4e-17 Score=82.21 Aligned_cols=63 Identities=19% Similarity=0.318 Sum_probs=59.1
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~ 64 (80)
|+++|.+||.|..+.++.++.++.++|||||+|.+.++|+.|+..||+..+.|+.|+|+++.+
T Consensus 32 l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~s 94 (95)
T 2ek1_A 32 ILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPSS 94 (95)
T ss_dssp HHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC-
T ss_pred HHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEeccC
Confidence 789999999999998999988999999999999999999999999999999999999998764
No 75
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.72 E-value=3.6e-17 Score=85.59 Aligned_cols=64 Identities=17% Similarity=0.218 Sum_probs=56.5
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECC----HHH----HHHHHH--hhCCeeecCEEEEEEecCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFST----EEE----AQKALT--EMNGKLLDGRVLFVDNVRPS 65 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~----~~~----~~~a~~--~l~~~~~~~~~i~v~~~~~~ 65 (80)
|+.+|++||+|.++.++.|+.||.++|||||+|.+ +++ |.+|+. .+++..++|+.|+|.+....
T Consensus 23 Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 23 IKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNKHS 96 (136)
T ss_dssp HHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECCTT
T ss_pred HHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECccc
Confidence 78999999999999999999999999999999996 333 788888 78999999999999986544
No 76
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.71 E-value=2.7e-18 Score=84.95 Aligned_cols=66 Identities=27% Similarity=0.558 Sum_probs=57.8
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRY 68 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 68 (80)
|+++|++||.|..+.++.++.++.++|||||+|.+.+ |..|+..+|+..+.|+.|.|+++.+....
T Consensus 18 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~~~ 83 (90)
T 2ki2_A 18 VKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPKKSL 83 (90)
T ss_dssp HTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC------
T ss_pred HHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCCCC
Confidence 6789999999999999999989999999999999999 99999999999999999999999876543
No 77
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.71 E-value=4.2e-18 Score=89.54 Aligned_cols=66 Identities=24% Similarity=0.422 Sum_probs=61.6
Q ss_pred HHHHhccCCceeE--EEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCe----eecCEEEEEEecCCCCCC
Q 035722 2 IADAFSQFGQVTK--ATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGK----LLDGRVLFVDNVRPSRRY 68 (80)
Q Consensus 2 l~~~f~~~G~i~~--~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~----~~~~~~i~v~~~~~~~~~ 68 (80)
|+++|.+||.|.. |.++.|+.++.++|||||+|.+. ++..|+..||+. .+.|+.|.|+++.+...+
T Consensus 40 L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 40 ILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKGSKRD 111 (131)
T ss_dssp HHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCCSCCC
T ss_pred HHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCCCCCC
Confidence 7899999999976 99999999999999999999999 999999999999 999999999999887543
No 78
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.71 E-value=2e-17 Score=83.38 Aligned_cols=63 Identities=21% Similarity=0.350 Sum_probs=59.1
Q ss_pred HHHHhccCCceeEEEEeecC-CCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDK-GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSR 66 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~-~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~ 66 (80)
|+++|++|| |.++.++.++ .+++++|||||+|.+.++|..|+ .+++..+.|+.|+|+++.++.
T Consensus 36 l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~~~ 99 (100)
T 2j76_E 36 IKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVADQAQ 99 (100)
T ss_dssp HHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECCCSC
T ss_pred HHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEeccCCC
Confidence 789999999 9999999998 68999999999999999999999 799999999999999998764
No 79
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.70 E-value=1.3e-17 Score=88.18 Aligned_cols=68 Identities=31% Similarity=0.529 Sum_probs=63.6
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYN 69 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~ 69 (80)
|+++|++||.|..+.++.++.++.++|||||+|.+.++|+.|+..||+..+.|+.|.|.++.+.....
T Consensus 64 L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 64 LRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 131 (135)
T ss_dssp HHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCT
T ss_pred HHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCc
Confidence 78999999999999999998899999999999999999999999999999999999999998776543
No 80
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.70 E-value=7e-17 Score=85.31 Aligned_cols=61 Identities=31% Similarity=0.487 Sum_probs=58.0
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEec
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV 62 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~ 62 (80)
|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|++.||+..+.|+.|+|++|
T Consensus 80 l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 80 LHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp HHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred HHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 7899999999999999999889999999999999999999999999999999999999875
No 81
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.70 E-value=1e-17 Score=80.33 Aligned_cols=60 Identities=27% Similarity=0.523 Sum_probs=57.0
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEec
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV 62 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~ 62 (80)
|+++|++||+|..+.++.++.++.++|||||+|.+.++|+.|++ +++..+.|+.|.|++|
T Consensus 16 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 16 VKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp HHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred HHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 78999999999999999998899999999999999999999998 8999999999999875
No 82
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.70 E-value=8.1e-17 Score=79.35 Aligned_cols=55 Identities=22% Similarity=0.354 Sum_probs=52.1
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEec
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV 62 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~ 62 (80)
|+++|.+||+|.++.+.. ++|||||+|.+.++|..|++.||+..+.|+.|+|+++
T Consensus 24 L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 24 LRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp HHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred HHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 789999999999999855 5899999999999999999999999999999999988
No 83
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.70 E-value=4.3e-17 Score=82.82 Aligned_cols=64 Identities=23% Similarity=0.374 Sum_probs=58.4
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCE-EEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR-VLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~-~i~v~~~~~~~~ 67 (80)
|+++|++||.|..+.++ +.+|.++|||||+|.+.++|..|+..||+..+.|+ .|.|.++.+...
T Consensus 38 l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~~k 102 (105)
T 2nlw_A 38 IHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDFDK 102 (105)
T ss_dssp HHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCCCC
T ss_pred HHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchHhh
Confidence 78999999999999887 45789999999999999999999999999999998 999999876543
No 84
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.70 E-value=4e-16 Score=83.82 Aligned_cols=63 Identities=30% Similarity=0.582 Sum_probs=60.2
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~ 64 (80)
|+++|++||.|..+.++.++.++.++|+|||+|.+.++|..|+..||+..+.|+.|.|.++++
T Consensus 104 l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 104 LRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred HHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 789999999999999999988999999999999999999999999999999999999999863
No 85
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.6e-16 Score=81.54 Aligned_cols=64 Identities=27% Similarity=0.483 Sum_probs=59.4
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeee--------cCEEEEEEecCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLL--------DGRVLFVDNVRPSR 66 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~--------~~~~i~v~~~~~~~ 66 (80)
|+++|.+||.|..+.++.++ ++.++|||||+|.+.++|..|+..||+..+ .+++|.|.++.|+.
T Consensus 42 l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~p~~ 113 (114)
T 1x5o_A 42 LENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSGPSS 113 (114)
T ss_dssp HHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECCCSC
T ss_pred HHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccCCCC
Confidence 78999999999999999998 899999999999999999999999999998 57889999998653
No 86
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.69 E-value=1.4e-16 Score=81.15 Aligned_cols=63 Identities=24% Similarity=0.329 Sum_probs=57.5
Q ss_pred HHHHhccCCceeEEEEeecCCC--CCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGK--NTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~--~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~ 64 (80)
|++.|++||.|.++.+++++.+ +.++|++||+|.+.++|.+|+..|||..+.|+.|.|.++..
T Consensus 32 l~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 32 VRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDP 96 (105)
T ss_dssp HHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCH
Confidence 7889999999999999988754 36789999999999999999999999999999999998754
No 87
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.8e-16 Score=79.62 Aligned_cols=66 Identities=23% Similarity=0.339 Sum_probs=59.0
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYNT 70 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~ 70 (80)
|+++|++||.|..+.+..+ +.++|||||+|.+.++|+.|++.||+..+.|+.|.|.++.+.....+
T Consensus 39 l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 104 (109)
T 1x4a_A 39 IEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGS 104 (109)
T ss_dssp HHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCCCCCCC
T ss_pred HHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccCCCCCC
Confidence 7899999999999988554 45789999999999999999999999999999999999988765443
No 88
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.69 E-value=3.2e-16 Score=87.43 Aligned_cols=68 Identities=28% Similarity=0.406 Sum_probs=63.8
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYN 69 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~ 69 (80)
|+++|++||.|..+.++.++.++.++|||||+|.+.++|..|+..||+..+.|+.|.|.++.++....
T Consensus 142 l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~~ 209 (216)
T 2qfj_A 142 IKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPL 209 (216)
T ss_dssp HHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSSTT
T ss_pred HHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCCCC
Confidence 78999999999999999998899999999999999999999999999999999999999998876533
No 89
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.7e-17 Score=82.29 Aligned_cols=61 Identities=21% Similarity=0.157 Sum_probs=57.7
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~ 64 (80)
|+++|++||+|.++.++.++. +.++|||||+|.+.++|..|+. +++..+.|+.|.|.++.+
T Consensus 28 L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 28 IKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp HHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred HHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 789999999999999999986 9999999999999999999999 899999999999998765
No 90
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.69 E-value=5.2e-17 Score=85.19 Aligned_cols=63 Identities=17% Similarity=0.294 Sum_probs=56.7
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
|+++|++||.|.+|.+.. ++.++|||||+|.+.++|..|+..|||..+.|+.|.|.++.+...
T Consensus 50 L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~~ 112 (127)
T 2a3j_A 50 LYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQS 112 (127)
T ss_dssp HHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCCH
T ss_pred HHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcch
Confidence 567999999999987743 678899999999999999999999999999999999999987654
No 91
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.68 E-value=5.5e-17 Score=92.20 Aligned_cols=63 Identities=19% Similarity=0.370 Sum_probs=60.5
Q ss_pred HHHHhccCC--ceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCC
Q 035722 2 IADAFSQFG--QVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64 (80)
Q Consensus 2 l~~~f~~~G--~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~ 64 (80)
|+++|.+|| .|.+|.++.|+.+++++|||||+|.+.++|..||..||+..|.|+.|.|.++.+
T Consensus 85 L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~ 149 (229)
T 3q2s_C 85 LTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNK 149 (229)
T ss_dssp HHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCH
T ss_pred HHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECCC
Confidence 789999999 999999999999999999999999999999999999999999999999999864
No 92
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=8e-17 Score=82.09 Aligned_cols=67 Identities=18% Similarity=0.247 Sum_probs=61.2
Q ss_pred HHHHhccCCc-eeEEEEe-ecCCCCCeeeEEEEEECCHHHHHHHHHhhC--CeeecCEEEEEEecCCCCCC
Q 035722 2 IADAFSQFGQ-VTKATII-MDKGKNTSKGYGSVTFSTEEEAQKALTEMN--GKLLDGRVLFVDNVRPSRRY 68 (80)
Q Consensus 2 l~~~f~~~G~-i~~~~~~-~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~--~~~~~~~~i~v~~~~~~~~~ 68 (80)
|+++|.+||. |..+.++ .++.++.++|||||+|.+.++|..|+..|+ +..+.|+.|.|.++.+....
T Consensus 25 l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~~~ 95 (109)
T 2dis_A 25 ILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDV 95 (109)
T ss_dssp HHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSCST
T ss_pred HHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcCCCCCc
Confidence 7889999998 9999998 788888999999999999999999999996 58999999999999887653
No 93
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=4.7e-16 Score=78.30 Aligned_cols=66 Identities=23% Similarity=0.424 Sum_probs=57.8
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYNTD 71 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~ 71 (80)
|+++|++||.| .++.+ .++.++|||||+|.+.++|+.|+..||+..+.|+.|+|.++.++....+.
T Consensus 32 l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~ 97 (101)
T 2fc9_A 32 LQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNSG 97 (101)
T ss_dssp HHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCCCCCCC
T ss_pred HHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCCCCCCC
Confidence 78999999987 45566 57889999999999999999999999999999999999999887665443
No 94
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-15 Score=76.48 Aligned_cols=64 Identities=25% Similarity=0.414 Sum_probs=57.1
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYNTD 71 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~ 71 (80)
|+++|.+||.|..+.+. .++|||||+|.+.++|..|+..||+..+.|+.|.|.++.+.....+.
T Consensus 30 l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~ 93 (97)
T 1x5p_A 30 LRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPMLDSG 93 (97)
T ss_dssp HHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCCCCSS
T ss_pred HHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCCCCCC
Confidence 78999999999999883 45789999999999999999999999999999999999887665443
No 95
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=4.1e-17 Score=78.50 Aligned_cols=60 Identities=27% Similarity=0.463 Sum_probs=57.2
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEec
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV 62 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~ 62 (80)
|+++|++||+|..+.++.++.++.++|||||+|.+.++|+.|+..++ ..+.|+.|.|+++
T Consensus 17 l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 17 LREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp HHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred HHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 78999999999999999999899999999999999999999999988 9999999999986
No 96
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.68 E-value=4.2e-16 Score=80.83 Aligned_cols=63 Identities=24% Similarity=0.377 Sum_probs=57.5
Q ss_pred HHHHhccCCceeEEEEeecCC----CCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCC
Q 035722 2 IADAFSQFGQVTKATIIMDKG----KNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~----~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~ 64 (80)
|++.|++||+|.++.++.++. ++.++|++||.|.+.++|..|+..|||..+.|+.|.|.++..
T Consensus 42 l~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 42 VTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp HHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCh
Confidence 678999999999999998864 457889999999999999999999999999999999998753
No 97
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.5e-16 Score=81.27 Aligned_cols=63 Identities=32% Similarity=0.634 Sum_probs=58.2
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSR 66 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~ 66 (80)
|+++|++||.|..+.++.++ +.++|||||+|.+.++|+.|+..||+..+.|+.|.|+++.++.
T Consensus 46 l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 108 (109)
T 2err_A 46 LRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 108 (109)
T ss_dssp HHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCCSC
T ss_pred HHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCc
Confidence 78999999999999999886 3489999999999999999999999999999999999998753
No 98
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.4e-17 Score=81.55 Aligned_cols=62 Identities=26% Similarity=0.447 Sum_probs=57.7
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~ 63 (80)
|+++|++||.|..+.++.++.++.++|||||+|.+.++|..|+..||+..+.|+.+++.++.
T Consensus 22 l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 22 LVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp HHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred HHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 78899999999999999998899999999999999999999999999999999988877654
No 99
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.67 E-value=5e-16 Score=85.64 Aligned_cols=66 Identities=20% Similarity=0.417 Sum_probs=62.8
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
|+++|++||.|..+.+..++.++.++|||||+|.+.++|..|+..||+..+.|+.|.|.++.++..
T Consensus 131 l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 131 VKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp HHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred HHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 789999999999999999988999999999999999999999999999999999999999988764
No 100
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5.6e-16 Score=79.06 Aligned_cols=64 Identities=31% Similarity=0.517 Sum_probs=57.9
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYNTD 71 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~ 71 (80)
|+.+|++||.|..+.++.+ +|||||+|.+.++|..|+..|++..+.|+.|+|.++.+.....+.
T Consensus 42 l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~ 105 (109)
T 1x4g_A 42 MRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTSG 105 (109)
T ss_dssp HHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCSSCCC
T ss_pred HHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCCCCCC
Confidence 7899999999999998776 689999999999999999999999999999999999887765443
No 101
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.5e-15 Score=76.52 Aligned_cols=67 Identities=28% Similarity=0.507 Sum_probs=59.2
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYNTD 71 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~ 71 (80)
|+++|+.| ..+.++.++.++.++|||||+|.+.++|+.|+..||+..+.|+.|.|.++.++..+++.
T Consensus 32 l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~~ 98 (102)
T 2fc8_A 32 LKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGSG 98 (102)
T ss_dssp HHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCCCSSSCS
T ss_pred HHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCCCCCCCC
Confidence 67788866 46778888889999999999999999999999999999999999999999988765543
No 102
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.48 E-value=5.4e-18 Score=87.41 Aligned_cols=68 Identities=24% Similarity=0.386 Sum_probs=63.0
Q ss_pred CHHHHhccCCceeE--------EEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCC
Q 035722 1 MIADAFSQFGQVTK--------ATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRY 68 (80)
Q Consensus 1 ~l~~~f~~~G~i~~--------~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 68 (80)
.|+++|++||.|.. +.++.++.++.++|||||+|.+.++|..|+..||+..+.|+.|.|.++.++..+
T Consensus 23 ~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 23 SVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRADF 98 (116)
Confidence 37889999999998 889999888999999999999999999999999999999999999999877654
No 103
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.66 E-value=1.7e-15 Score=81.39 Aligned_cols=66 Identities=29% Similarity=0.513 Sum_probs=62.4
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
|+++|++||.|..+.++.++.++.++|||||+|.+.++|..|+..+++..+.|+.|.|.++.+...
T Consensus 19 l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~ 84 (167)
T 1fxl_A 19 FRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA 84 (167)
T ss_dssp HHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCG
T ss_pred HHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCcc
Confidence 789999999999999999998999999999999999999999999999999999999999987654
No 104
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.66 E-value=7.2e-16 Score=83.41 Aligned_cols=62 Identities=21% Similarity=0.440 Sum_probs=59.4
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~ 63 (80)
|+++|++||.|..+.++.++.++.++|||||+|.+.++|..|+..||+..+.|+.|.|++|.
T Consensus 111 l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 111 VKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp HHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 78999999999999999998899999999999999999999999999999999999999873
No 105
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.66 E-value=1.4e-15 Score=83.76 Aligned_cols=68 Identities=21% Similarity=0.436 Sum_probs=58.6
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYNT 70 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~ 70 (80)
|+++|++||.|..+.++.++.++.++|||||+|.+.++|..|+.. ++..+.|+.|.|.++.++....+
T Consensus 121 l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMAS 188 (196)
T ss_dssp HHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC-------
T ss_pred HHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHhcc
Confidence 789999999999999999998999999999999999999999986 89999999999999998876544
No 106
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=2.7e-15 Score=76.44 Aligned_cols=61 Identities=21% Similarity=0.311 Sum_probs=56.1
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecC-----EEEEEEecCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDG-----RVLFVDNVRPSRRYN 69 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~-----~~i~v~~~~~~~~~~ 69 (80)
|+++|.+||.|..+.++.+ |||||+|.+.++|+.|++.||+..+.| +.|+|.++.++....
T Consensus 32 l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~~~~~ 97 (108)
T 1x4c_A 32 LKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSPSY 97 (108)
T ss_dssp HHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCCSCCC
T ss_pred HHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCCCCCC
Confidence 7899999999999999776 799999999999999999999999999 999999998876543
No 107
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.65 E-value=1.5e-15 Score=81.83 Aligned_cols=66 Identities=27% Similarity=0.454 Sum_probs=62.4
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
|+++|++||+|.++.++.++.++.++|||||+|.+.++|..|+..+++..+.|+.|.|.++.+...
T Consensus 20 l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~ 85 (168)
T 1b7f_A 20 LYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGE 85 (168)
T ss_dssp HHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSS
T ss_pred HHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcc
Confidence 789999999999999999988999999999999999999999999999999999999999987654
No 108
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.65 E-value=2.6e-16 Score=84.81 Aligned_cols=64 Identities=22% Similarity=0.460 Sum_probs=60.4
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSR 66 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~ 66 (80)
|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|++ +++..+.|+.|.|.++.|+.
T Consensus 104 l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk~ 167 (167)
T 2cjk_A 104 FEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPRH 167 (167)
T ss_dssp HHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCCC
T ss_pred HHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCCC
Confidence 78999999999999999998899999999999999999999998 89999999999999998763
No 109
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.1e-16 Score=79.35 Aligned_cols=63 Identities=17% Similarity=0.266 Sum_probs=55.7
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCC--eeecCEEEEEEecCCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNG--KLLDGRVLFVDNVRPSRRYNT 70 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~--~~~~~~~i~v~~~~~~~~~~~ 70 (80)
|+++|++||.|.++.++.+ +|||||+|.+.++|..|++.+++ ..+.|+.|.|.++.++.....
T Consensus 33 L~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~~~~ 97 (105)
T 1sjq_A 33 VISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTD 97 (105)
T ss_dssp HHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSSCCCT
T ss_pred HHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCCCCcc
Confidence 7899999999999999865 68999999999999999998864 689999999999987765443
No 110
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.9e-15 Score=77.54 Aligned_cols=63 Identities=27% Similarity=0.512 Sum_probs=56.1
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRY 68 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 68 (80)
|+++|++||.|..+.+ .++ .++|||||+|.+.++|..|+..||+..+.|+.|.|.++.+....
T Consensus 43 l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 43 LRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp HHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCCS
T ss_pred HHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCc
Confidence 6889999999999965 554 37899999999999999999999999999999999999886553
No 111
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.65 E-value=9.8e-16 Score=93.73 Aligned_cols=66 Identities=23% Similarity=0.511 Sum_probs=62.3
Q ss_pred CHHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCC
Q 035722 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSR 66 (80)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~ 66 (80)
.|..+|++||.|..|.|+.++.++.++|||||+|.+.++|..||..||+..|.|+.|.|.++.+..
T Consensus 118 ~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~ 183 (437)
T 3pgw_S 118 KLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRT 183 (437)
T ss_pred HHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCC
Confidence 378999999999999999998899999999999999999999999999999999999999998654
No 112
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.1e-16 Score=80.69 Aligned_cols=63 Identities=22% Similarity=0.318 Sum_probs=58.9
Q ss_pred HHHHhccCCce-eEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCC
Q 035722 2 IADAFSQFGQV-TKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSR 66 (80)
Q Consensus 2 l~~~f~~~G~i-~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~ 66 (80)
|+++|++||.| ..+.++.++ ++.++|||||+|.+.++|+.|+.. |+..+.|+.|.|.++.+..
T Consensus 32 l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~~~ 95 (114)
T 2cpy_A 32 VLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVTLED 95 (114)
T ss_dssp HHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEECHHH
T ss_pred HHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECCHHH
Confidence 78999999999 889999999 999999999999999999999996 9999999999999987654
No 113
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=7.7e-16 Score=77.05 Aligned_cols=61 Identities=23% Similarity=0.385 Sum_probs=55.6
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeec--CEEEEEEecCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLD--GRVLFVDNVRPSRRY 68 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~--~~~i~v~~~~~~~~~ 68 (80)
|+++|++||.|..+.+..+ +|||||+|.+.++|+.|+..||+..+. |+.|.|+++.++..+
T Consensus 34 l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~~~ 96 (97)
T 1why_A 34 LAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGPSS 96 (97)
T ss_dssp HHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCCCC
T ss_pred HHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCCCC
Confidence 7899999999999988653 679999999999999999999999999 999999999887653
No 114
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.64 E-value=1.1e-15 Score=79.11 Aligned_cols=62 Identities=16% Similarity=0.219 Sum_probs=57.8
Q ss_pred HHHHhccCCc---eeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCC
Q 035722 2 IADAFSQFGQ---VTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65 (80)
Q Consensus 2 l~~~f~~~G~---i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~ 65 (80)
|+++|++||. |..+.++.++. ++++|||||+|.+.++++.|+. +|+..+.|+.|+|.++.+.
T Consensus 34 l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~ 98 (118)
T 2db1_A 34 VQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFKSHRT 98 (118)
T ss_dssp HHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEEECHH
T ss_pred HHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECCHH
Confidence 7899999999 89999999985 9999999999999999999999 9999999999999988644
No 115
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.3e-15 Score=75.30 Aligned_cols=62 Identities=26% Similarity=0.448 Sum_probs=56.2
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYNTD 71 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~ 71 (80)
|+++|++||.|..+.+. +|||||+|.+.++|+.|+..+|+..+.|+.|+|+++.++....+.
T Consensus 25 l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~ 86 (90)
T 2dnq_A 25 IRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSKASSG 86 (90)
T ss_dssp HHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCCCCSS
T ss_pred HHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCCCCCC
Confidence 78999999999999886 579999999999999999999999999999999999888765443
No 116
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.64 E-value=3.1e-15 Score=86.58 Aligned_cols=78 Identities=21% Similarity=0.360 Sum_probs=68.8
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCCCCccccceec
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYNTDVPLARLKI 79 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 79 (80)
|+++|++||.|..+.++.++.++.++|||||+|.+.++|..|+..+++..+.|+.|.|.++.+........+...++|
T Consensus 112 l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~l~v 189 (284)
T 3smz_A 112 FEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCV 189 (284)
T ss_dssp HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCCTTTTSCSEEEE
T ss_pred HHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCcccCCccEEEE
Confidence 789999999999999999998999999999999999999999999999999999999999987765554444455544
No 117
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.64 E-value=1e-16 Score=77.99 Aligned_cols=56 Identities=27% Similarity=0.439 Sum_probs=51.4
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCE-EEEE
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR-VLFV 59 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~-~i~v 59 (80)
|+++|++||.|.++.++ +.++.++|||||+|.+.++|..|+..||+..+.|+ .|+|
T Consensus 24 l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 24 IHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp HHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred HHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 78899999999999887 45789999999999999999999999999999998 7765
No 118
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.8e-16 Score=78.71 Aligned_cols=64 Identities=19% Similarity=0.209 Sum_probs=58.1
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRY 68 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 68 (80)
|+++|.+||. ..+.++.++ +++++|||||+|.+.++|+.|+. +|+..+.++.|+|..+.+....
T Consensus 32 l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~~~~~~ 95 (102)
T 1wez_A 32 IYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNSTAGTS 95 (102)
T ss_dssp HHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEECCCCCC
T ss_pred HHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCCCCCC
Confidence 7899999994 599999998 89999999999999999999996 7999999999999998876643
No 119
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=5.4e-15 Score=73.31 Aligned_cols=62 Identities=19% Similarity=0.393 Sum_probs=55.8
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYNTD 71 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~ 71 (80)
|+++|++||.|..+.+++ +||||+|.+.++|..|+..||+..+.|+.|.|+++.++....+.
T Consensus 27 l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~~ 88 (92)
T 2dgt_A 27 LRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTASG 88 (92)
T ss_dssp HHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCSCCCC
T ss_pred HHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCCCCCC
Confidence 789999999999998863 39999999999999999999999999999999999888765543
No 120
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.64 E-value=4e-15 Score=83.44 Aligned_cols=65 Identities=23% Similarity=0.340 Sum_probs=61.6
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSR 66 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~ 66 (80)
|+++|++||+|.+|.+++|+.+++++|||||+|.+.++|..|+..+++..+.|+.|++.++.+..
T Consensus 32 L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~ 96 (213)
T 4f02_A 32 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDP 96 (213)
T ss_dssp HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCT
T ss_pred HHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccccc
Confidence 78999999999999999999999999999999999999999999999999999999999887654
No 121
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.64 E-value=1.5e-15 Score=77.59 Aligned_cols=59 Identities=27% Similarity=0.481 Sum_probs=53.9
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRY 68 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 68 (80)
|+++|++||.|..+.+. +|||||+|.+.++|+.|+..||+..+.|+.|.|.++.+...+
T Consensus 48 L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~r 106 (108)
T 2jvo_A 48 LNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPAKR 106 (108)
T ss_dssp HHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC--
T ss_pred HHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCCCC
Confidence 78999999999999886 689999999999999999999999999999999999887654
No 122
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.64 E-value=6.6e-15 Score=79.01 Aligned_cols=65 Identities=23% Similarity=0.429 Sum_probs=59.6
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
|+++|++||+|.++.++.++ ++.++|||||+|.+.++|..|+..+++..+.|+.|.|.++.+...
T Consensus 17 l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~ 81 (166)
T 3md3_A 17 LKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQ 81 (166)
T ss_dssp HHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCC
T ss_pred HHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCC
Confidence 78999999999999999987 577999999999999999999999999999999999999977654
No 123
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.63 E-value=4.7e-16 Score=82.38 Aligned_cols=62 Identities=15% Similarity=0.206 Sum_probs=57.9
Q ss_pred HHHHhccCCc---eeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCC
Q 035722 2 IADAFSQFGQ---VTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65 (80)
Q Consensus 2 l~~~f~~~G~---i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~ 65 (80)
|+++|++||. |..+.++.++. ++++|||||+|.+.++|+.|+. +|+..+.|+.|+|.++.+.
T Consensus 61 L~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~~~ 125 (136)
T 2hgl_A 61 VQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKSHRT 125 (136)
T ss_dssp HHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEECCHH
T ss_pred HHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEECChH
Confidence 7899999999 88999999986 9999999999999999999999 9999999999999987643
No 124
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=3.6e-16 Score=78.74 Aligned_cols=62 Identities=24% Similarity=0.410 Sum_probs=57.1
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRY 68 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 68 (80)
|+++|++||+|..+.++.+ ++|||||+|.+.++|..|+..|++..+.|+.|.|.++.+....
T Consensus 17 l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 17 LERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp HHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred HHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 7899999999999999876 6789999999999999999999999999999999999877643
No 125
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.63 E-value=3.6e-16 Score=78.13 Aligned_cols=63 Identities=21% Similarity=0.308 Sum_probs=56.7
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
|+++|++||.|..+.+.. ++.++|||||+|.+.++|..|+..||+..+.|+.|.|.++.+...
T Consensus 29 l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 29 LHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSD 91 (97)
T ss_dssp HHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCCT
T ss_pred HHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCCc
Confidence 449999999999998763 567889999999999999999999999999999999999987654
No 126
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=7.3e-17 Score=82.91 Aligned_cols=70 Identities=21% Similarity=0.343 Sum_probs=58.0
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYNTD 71 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~ 71 (80)
|+++|++||.|..+.+..+..++.++|||||+|.+.++|..|+..||+..+.|+.|.|.++.+...+.+.
T Consensus 42 l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~ 111 (115)
T 2cpx_A 42 LVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKKQRSSG 111 (115)
T ss_dssp HHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCSCCCCC
T ss_pred HHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCCCCCCCC
Confidence 7889999999944322222227889999999999999999999999999999999999999988765443
No 127
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.63 E-value=1.2e-15 Score=76.18 Aligned_cols=62 Identities=23% Similarity=0.342 Sum_probs=55.3
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRY 68 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 68 (80)
|+++|++||.|..+ ..++.++|||||+|.+.++|..|+..+++..+.|+.|.|.++.++...
T Consensus 33 l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 94 (96)
T 1fjc_A 33 LKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGGT 94 (96)
T ss_dssp HHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSCCC
T ss_pred HHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCCC
Confidence 78899999988766 237889999999999999999999999999999999999999877654
No 128
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.6e-15 Score=76.86 Aligned_cols=64 Identities=25% Similarity=0.281 Sum_probs=58.1
Q ss_pred HHHHhccCCceeE-EEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTK-ATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~-~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
|+++|.+||.|.. +.++.+ .+++++|||||+|.+.++|+.|+.. ++..+.|+.|+|.++.+..-
T Consensus 32 l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~~~~ 96 (104)
T 1wg5_A 32 IVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSSRAEV 96 (104)
T ss_dssp HHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEECTTTS
T ss_pred HHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECCHHHH
Confidence 7899999999987 888888 5899999999999999999999997 99999999999999876543
No 129
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.8e-15 Score=74.67 Aligned_cols=62 Identities=16% Similarity=0.184 Sum_probs=54.6
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhh--CCeeecCEEEEEEecCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEM--NGKLLDGRVLFVDNVRPSRRYN 69 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l--~~~~~~~~~i~v~~~~~~~~~~ 69 (80)
|+++|++||.|..+.++.+ +|||||+|.+.++|..|+..+ ++..+.|+.|.|.++.+.....
T Consensus 32 L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~~~ 95 (101)
T 2cq1_A 32 VIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKT 95 (101)
T ss_dssp HHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSSCCC
T ss_pred HHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcccCcC
Confidence 7899999999999988764 689999999999999999976 4678999999999998776544
No 130
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.63 E-value=4.1e-15 Score=75.13 Aligned_cols=60 Identities=33% Similarity=0.577 Sum_probs=54.5
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYN 69 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~ 69 (80)
|+++|++||.|..+.++ ++||||+|.+.++|..|+..||+..+.|+.|.|.++.+.....
T Consensus 28 l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 87 (103)
T 2dgu_A 28 LEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKR 87 (103)
T ss_dssp HHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCCC
T ss_pred HHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcccc
Confidence 78999999999999875 4599999999999999999999999999999999998776544
No 131
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.63 E-value=3.6e-15 Score=83.61 Aligned_cols=63 Identities=41% Similarity=0.769 Sum_probs=58.6
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSR 66 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~ 66 (80)
|+++|++||.|..+.++.+. +.++|||||+|.+.++|.+|++.||+..+.|+.|.|.++.++.
T Consensus 120 l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 120 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp HHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHH
T ss_pred HHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCc
Confidence 78999999999999999985 4579999999999999999999999999999999999998764
No 132
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.62 E-value=1.9e-17 Score=83.49 Aligned_cols=66 Identities=20% Similarity=0.305 Sum_probs=59.4
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYN 69 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~ 69 (80)
|+++|++||.|.. .++.++.++.++|||||+|.+.++|+.|++ +|+..+.|+.|.|.++.++..++
T Consensus 34 l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~~~~~~ 99 (101)
T 1fj7_A 34 LKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDGTR 99 (101)
T ss_dssp HHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSCCCCSS
T ss_pred HHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCCCCCCC
Confidence 7889999999888 667777788999999999999999999999 99999999999999998876554
No 133
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.62 E-value=9.5e-16 Score=77.29 Aligned_cols=63 Identities=29% Similarity=0.493 Sum_probs=58.4
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
|+++|++||.|..+.++.++ ++.++|||||+|.+.++|+.|+. ++..+.|+.|.|.++.+...
T Consensus 26 l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~~~~ 88 (102)
T 2xs2_A 26 IRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIRKQN 88 (102)
T ss_dssp HHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEECC-
T ss_pred HHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCcCcc
Confidence 78999999999999999998 99999999999999999999998 89999999999999976654
No 134
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.62 E-value=1.1e-16 Score=76.72 Aligned_cols=60 Identities=23% Similarity=0.355 Sum_probs=56.2
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEec
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV 62 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~ 62 (80)
|+++|++||+|..+.++.++.++.++|||||+|.+.++++.|+.. ++..+.|+.|.|+++
T Consensus 16 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 16 IREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp HHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred HHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 789999999999999999988999999999999999999999995 899999999999875
No 135
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.62 E-value=1.2e-15 Score=78.31 Aligned_cols=61 Identities=21% Similarity=0.287 Sum_probs=53.6
Q ss_pred HHHHhccCC-ceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCC
Q 035722 2 IADAFSQFG-QVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSR 66 (80)
Q Consensus 2 l~~~f~~~G-~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~ 66 (80)
|+++|++|| .|..+.+.. +.++|||||+|.+.++|+.|++.||+..+.|+.|.|+++..++
T Consensus 45 L~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~p 106 (111)
T 2jvr_A 45 LKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNPP 106 (111)
T ss_dssp HHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC--
T ss_pred HHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 789999999 899988753 2478999999999999999999999999999999999987554
No 136
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.62 E-value=1e-14 Score=76.60 Aligned_cols=61 Identities=20% Similarity=0.317 Sum_probs=54.8
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeE-EEEEECCHHHHHHHHHhhCCeeecC--EEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGY-GSVTFSTEEEAQKALTEMNGKLLDG--RVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~-~~v~f~~~~~~~~a~~~l~~~~~~~--~~i~v~~~~~~~~ 67 (80)
|+++|++||.|.++.+.... +|| |||+|.+.++|..|++.|||..+.| ..|+|.|+++..-
T Consensus 45 L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l 108 (130)
T 3zzy_A 45 LHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSL 108 (130)
T ss_dssp HHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSSC
T ss_pred HHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCce
Confidence 78999999999999887642 577 9999999999999999999999998 9999999987643
No 137
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.62 E-value=9.3e-16 Score=84.27 Aligned_cols=65 Identities=31% Similarity=0.488 Sum_probs=61.0
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
|+++|++||.|..|.+..++ ++.++|||||+|.+.++|..|+..||+..+.|+.|.|.++.+...
T Consensus 105 L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~~~ 169 (177)
T 2f3j_A 105 IQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQID 169 (177)
T ss_dssp HHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSGGG
T ss_pred HHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 78999999999999999998 899999999999999999999999999999999999999976543
No 138
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.61 E-value=3.1e-16 Score=83.32 Aligned_cols=69 Identities=28% Similarity=0.362 Sum_probs=55.8
Q ss_pred HHHHhccCCceeEEE--E---eecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCCC
Q 035722 2 IADAFSQFGQVTKAT--I---IMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYNT 70 (80)
Q Consensus 2 l~~~f~~~G~i~~~~--~---~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~ 70 (80)
|+.+|++||.|..+. + +....++.++|||||+|.+.++|..|+..||+..+.|+.|.|.++.+...+..
T Consensus 62 L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~~~~ 135 (143)
T 3egn_A 62 LKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSARPKQD 135 (143)
T ss_dssp HHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECCCSCC---
T ss_pred HHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCccC
Confidence 789999999987641 1 11123788999999999999999999999999999999999999987665443
No 139
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.61 E-value=1e-14 Score=80.27 Aligned_cols=65 Identities=28% Similarity=0.497 Sum_probs=59.0
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
|+++|++||.|.++.++.++.++.++|||||+|.+.++|..|+.. ++..+.|+.|.|.++.+...
T Consensus 30 l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~~~~ 94 (196)
T 1l3k_A 30 LRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSRED 94 (196)
T ss_dssp HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECCC---
T ss_pred HHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecccCccc
Confidence 789999999999999999998999999999999999999999985 89999999999999876644
No 140
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.3e-15 Score=78.09 Aligned_cols=64 Identities=17% Similarity=0.264 Sum_probs=56.2
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCC--eeecCEEEEEEecCCCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNG--KLLDGRVLFVDNVRPSRRYNTD 71 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~--~~~~~~~i~v~~~~~~~~~~~~ 71 (80)
|+++|++||.|.++.++.+ +|||||+|.+.++|..|+..+++ ..+.|+.|.|.++.++......
T Consensus 48 L~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~~~~~ 113 (119)
T 2ad9_A 48 VISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 113 (119)
T ss_dssp HHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSSCCCCC
T ss_pred HHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCCCCccc
Confidence 7899999999999998875 68999999999999999998874 5799999999999887665443
No 141
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.1e-16 Score=82.31 Aligned_cols=64 Identities=20% Similarity=0.310 Sum_probs=58.0
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSR 66 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~ 66 (80)
|+++|.+||.|..+.++.+..++.++|||||+|.+.++|..|+. +|+..+.|+.|.|.++.+..
T Consensus 42 l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~~ 105 (124)
T 1wel_A 42 VIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPITKKG 105 (124)
T ss_dssp HHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEECHHH
T ss_pred HHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCHHH
Confidence 78999999999986666776799999999999999999999999 99999999999999987543
No 142
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.61 E-value=3.7e-15 Score=76.10 Aligned_cols=58 Identities=29% Similarity=0.567 Sum_probs=53.5
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
|+++|++||.|..+.+ ++|||||+|.+.++|+.|+..||+..+.|+.|.|.++.++..
T Consensus 45 l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 45 VETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp HHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCCS
T ss_pred HHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCCC
Confidence 7899999999999988 578999999999999999999999999999999999986554
No 143
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.61 E-value=8.8e-15 Score=73.36 Aligned_cols=57 Identities=16% Similarity=0.388 Sum_probs=52.6
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSR 66 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~ 66 (80)
|+++|++||.|..+.+. +|||||+|.+.++|..|+..+|+..+.|+.|+|+++++..
T Consensus 40 L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (97)
T 2xnq_A 40 LFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSNA 96 (97)
T ss_dssp HHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCCC
T ss_pred HHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCCC
Confidence 78999999999999882 6899999999999999999999999999999999987653
No 144
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.61 E-value=4e-15 Score=75.09 Aligned_cols=59 Identities=19% Similarity=0.319 Sum_probs=52.6
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCee--ecCEEEEEEecCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKL--LDGRVLFVDNVRPSR 66 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~--~~~~~i~v~~~~~~~ 66 (80)
|+++|++||.|.++.+++ .+|||||+|.+.++|..|+..+++.. +.|++|.|++++++.
T Consensus 38 L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 38 LVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQK 98 (100)
T ss_dssp HHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCSC
T ss_pred HHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccccc
Confidence 789999999999998864 36899999999999999999998765 789999999998754
No 145
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.60 E-value=5.5e-15 Score=79.59 Aligned_cols=61 Identities=26% Similarity=0.485 Sum_probs=58.0
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecC--EEEEEEec
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDG--RVLFVDNV 62 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~--~~i~v~~~ 62 (80)
|+++|++||.|..+.++.++.++.++|+|||+|.+.++|..|+..||+..+.| ++|.|++|
T Consensus 106 l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 106 LDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 78999999999999999998899999999999999999999999999999988 99999885
No 146
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=5.7e-15 Score=75.61 Aligned_cols=61 Identities=23% Similarity=0.334 Sum_probs=55.8
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~ 65 (80)
|+++|++| .|..+.++.++. ++++|||||+|.+.++|+.|+ .+|+..+.|+.|+|..+.+.
T Consensus 33 l~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 33 VRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred HHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence 78999999 899999999984 999999999999999999999 58999999999999887543
No 147
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.60 E-value=2.1e-15 Score=75.91 Aligned_cols=58 Identities=19% Similarity=0.272 Sum_probs=53.3
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~ 65 (80)
|+++|++||.|.++.+. .++|||||+|.+.++|..|+..||+..+.|+.|+|.+++++
T Consensus 44 l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 44 LIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp HHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred HHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 78999999999999886 35689999999999999999999999999999999998764
No 148
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=3.6e-15 Score=75.56 Aligned_cols=60 Identities=20% Similarity=0.272 Sum_probs=53.0
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCe--eecCEEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGK--LLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~--~~~~~~i~v~~~~~~~~ 67 (80)
|+++|++||.|.++.++.+ +|||||+|.+.++|..|++.|++. .+.|+.|.|.++.+...
T Consensus 33 L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~ 94 (102)
T 1x4d_A 33 LLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKR 94 (102)
T ss_dssp HHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCCTT
T ss_pred HHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCCCC
Confidence 7889999999999998765 479999999999999999988864 59999999999986543
No 149
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.60 E-value=1.8e-15 Score=80.96 Aligned_cols=60 Identities=22% Similarity=0.414 Sum_probs=55.8
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSR 66 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~ 66 (80)
|+++|++||.|.++.++.+ ++|||||+|.+.+++..|+..||+..+.|+.|+|.++.++.
T Consensus 90 l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 90 LERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 7899999999999999776 57899999999999999999999999999999999998764
No 150
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=3.4e-15 Score=75.85 Aligned_cols=62 Identities=18% Similarity=0.285 Sum_probs=53.9
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCe--eecCEEEEEEecCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGK--LLDGRVLFVDNVRPSRRYN 69 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~--~~~~~~i~v~~~~~~~~~~ 69 (80)
|+++|++||.|..+.++.+ +|||||+|.+.++|..|+..|++. .+.|+.|.|.++.++....
T Consensus 32 L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~~~ 95 (104)
T 1wex_A 32 LVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRITR 95 (104)
T ss_dssp HHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSCCC
T ss_pred HHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCccccC
Confidence 7899999999999988653 689999999999999999988654 5999999999998776543
No 151
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.59 E-value=2.6e-15 Score=77.08 Aligned_cols=64 Identities=19% Similarity=0.352 Sum_probs=57.5
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRY 68 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 68 (80)
|+++|++||.|..+.++.+. .++|||||+|.+.++|..|+..||+..+.|+.|.|.++.+....
T Consensus 25 l~~~F~~~G~v~~v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 88 (115)
T 3lqv_A 25 MYDIFGKYGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRAF 88 (115)
T ss_dssp HHHHHHTTSCEEEEEEECST---TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHHT
T ss_pred HHHHHHhcCCeEEEEEeeCC---CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCChhh
Confidence 78999999999999998753 45899999999999999999999999999999999999875543
No 152
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.59 E-value=2.8e-15 Score=77.96 Aligned_cols=61 Identities=26% Similarity=0.414 Sum_probs=55.1
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRY 68 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 68 (80)
|+++|++||.|..+.+. .++|||||+|.+.++|..|+..||+..+.|+.|.|.++.+....
T Consensus 54 L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~~ 114 (121)
T 2bz2_A 54 LRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPML 114 (121)
T ss_dssp HHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC-
T ss_pred HHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCCC
Confidence 78999999999999885 45789999999999999999999999999999999999877543
No 153
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.5e-14 Score=71.69 Aligned_cols=60 Identities=33% Similarity=0.581 Sum_probs=53.9
Q ss_pred HHHHhccC--CceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCC
Q 035722 2 IADAFSQF--GQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYN 69 (80)
Q Consensus 2 l~~~f~~~--G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~ 69 (80)
|+++|++| |.|..+.+. +|||||+|.+.++|..|+..||+..+.|+.|.|.++.+.....
T Consensus 32 l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 93 (99)
T 2cpd_A 32 IEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDKDS 93 (99)
T ss_dssp HHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCCCCC
T ss_pred HHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCC
Confidence 78999999 899988763 5699999999999999999999999999999999998876543
No 154
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.59 E-value=7.6e-15 Score=85.25 Aligned_cols=64 Identities=23% Similarity=0.394 Sum_probs=58.4
Q ss_pred HHHHhccCCceeEEEEeecCC-CCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKG-KNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSR 66 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~-~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~ 66 (80)
|+++|++||.|..+.++.++. ++.++|||||+|.+.++|..|+ .||+..+.|+.|.|.++.+++
T Consensus 228 l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 228 LRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp HHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCCC
T ss_pred HHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCCC
Confidence 789999999999999999875 5899999999999999999999 999999999999999998763
No 155
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=4.7e-15 Score=74.40 Aligned_cols=60 Identities=27% Similarity=0.380 Sum_probs=55.2
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
|+++|++||.|..+.+..+ +|||||+|.+.++|..|+..||+..+.|+.|+|.++.+...
T Consensus 32 l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 32 MRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSAS 91 (99)
T ss_dssp HHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCSC
T ss_pred HHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCCC
Confidence 7899999999999998754 68999999999999999999999999999999999988764
No 156
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.59 E-value=9.5e-15 Score=84.56 Aligned_cols=67 Identities=22% Similarity=0.285 Sum_probs=62.7
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYN 69 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~ 69 (80)
|+++|++||.|..+.++.++ +|.++|+|||.|.+.++|..|+..||+..+.|+.|.|.++.++..+.
T Consensus 202 l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 268 (284)
T 3smz_A 202 LCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGR 268 (284)
T ss_dssp HHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSCHH
T ss_pred HHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCccc
Confidence 78999999999999999988 79999999999999999999999999999999999999998877643
No 157
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=9.9e-15 Score=73.69 Aligned_cols=61 Identities=16% Similarity=0.196 Sum_probs=52.7
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYN 69 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~ 69 (80)
|+++|++||.|.++.++ +.++|||||+|.+.++|..|+..+ ..+.++.|+|.|+.+.....
T Consensus 34 L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~--~~~~g~~l~V~~a~~~~~~~ 94 (100)
T 2d9o_A 34 LLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNE--VGLVDNPLKISWLEGQPQDA 94 (100)
T ss_dssp HHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTC--CBCSSSBCEEECSSCCCCCC
T ss_pred HHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhc--CCCCCCeEEEEEccCCCCCC
Confidence 78999999999999986 367899999999999999999974 44689999999998776543
No 158
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.59 E-value=5.6e-15 Score=76.15 Aligned_cols=59 Identities=15% Similarity=0.265 Sum_probs=53.6
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~ 64 (80)
|++.|++||.|.++.+.++. .+|++||.|.+.++|..|+..|||..++|+.|.|.++..
T Consensus 34 l~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 34 VIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPL 92 (114)
T ss_dssp HHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcH
Confidence 67899999999999886653 489999999999999999999999999999999999853
No 159
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.59 E-value=8.6e-15 Score=78.63 Aligned_cols=61 Identities=28% Similarity=0.531 Sum_probs=57.0
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEE--EEEEec
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRV--LFVDNV 62 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~--i~v~~~ 62 (80)
|+++|++||.|..+.++.++.++.++|||||+|.+.++|..|+..||+..+.|+. |.|.||
T Consensus 105 l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 105 LEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 7899999999999999999889999999999999999999999999999999965 888875
No 160
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.3e-14 Score=71.70 Aligned_cols=59 Identities=22% Similarity=0.447 Sum_probs=53.9
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRY 68 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 68 (80)
|+++|++||.|..+.+++ +||||+|.+.++|+.|+..||+..+.|+.|.|.++.+...+
T Consensus 26 l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 84 (90)
T 2dnp_A 26 LRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKK 84 (90)
T ss_dssp HHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCCC
T ss_pred HHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCCC
Confidence 789999999999998863 39999999999999999999999999999999999887553
No 161
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.6e-14 Score=71.90 Aligned_cols=61 Identities=23% Similarity=0.340 Sum_probs=53.6
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRY 68 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 68 (80)
|+++|++||.|.+| +.++.++. ||||+|.+.++++.|+. +|+..+.|+.|.|+++.++...
T Consensus 25 l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~~ 85 (94)
T 2e5g_A 25 LSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEFQ 85 (94)
T ss_dssp HHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCCC
T ss_pred HHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCCC
Confidence 78999999999987 56665655 99999999999999999 9999999999999988766543
No 162
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.58 E-value=7e-15 Score=79.84 Aligned_cols=61 Identities=20% Similarity=0.278 Sum_probs=54.8
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecC--EEEEEEecCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDG--RVLFVDNVRPSR 66 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~--~~i~v~~~~~~~ 66 (80)
|+++|++||+|.++.+.... .+|||||+|.+.++|+.|++.|||..+.| +.|+|+|++++.
T Consensus 63 L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 63 LHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp HHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred HHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 78999999999999986432 57899999999999999999999999976 999999998774
No 163
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.3e-14 Score=70.80 Aligned_cols=56 Identities=27% Similarity=0.432 Sum_probs=51.7
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhh-CCeeecCEEEEEEecC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEM-NGKLLDGRVLFVDNVR 63 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l-~~~~~~~~~i~v~~~~ 63 (80)
|+++|++||.|..+.++.+ +|||||+|.+.++|..|+..| ++..+.|+.|+|++++
T Consensus 29 l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 29 LRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp HHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred HHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 7899999999999998764 689999999999999999988 9999999999999874
No 164
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5.6e-15 Score=73.35 Aligned_cols=63 Identities=17% Similarity=0.327 Sum_probs=54.2
Q ss_pred HHHHhccCCc-eeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCC-eeecCEEEEEEecCCCCCCCCC
Q 035722 2 IADAFSQFGQ-VTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNG-KLLDGRVLFVDNVRPSRRYNTD 71 (80)
Q Consensus 2 l~~~f~~~G~-i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~-~~~~~~~i~v~~~~~~~~~~~~ 71 (80)
|+++|++||. +..+.+ .++|||||+|.+.++|+.|+..||+ ..+.|+.|.|+++.++..+...
T Consensus 25 l~~~F~~~G~vv~~~~~-------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~~~~~~ 89 (93)
T 2cqh_A 25 LRQLFGDRKLPLAGQVL-------LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKKLRSSG 89 (93)
T ss_dssp HHHHHHHTTCCCSSCEE-------EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCCCCCCS
T ss_pred HHHHHHHcCCceEEEEE-------cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCccccCCC
Confidence 7899999999 555554 2468999999999999999999999 9999999999999988765443
No 165
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=3e-15 Score=74.93 Aligned_cols=61 Identities=20% Similarity=0.291 Sum_probs=54.0
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
|+++|++||.|. +.++.+ .++|||||+|.+.++|+.|+..||+..+.|+.|.|.++.++..
T Consensus 36 l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 96 (97)
T 2e5j_A 36 LKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQRD 96 (97)
T ss_dssp HHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCCC
T ss_pred HHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCCC
Confidence 789999999996 566544 5688999999999999999999999999999999999987654
No 166
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=5.9e-15 Score=75.63 Aligned_cols=59 Identities=20% Similarity=0.241 Sum_probs=53.5
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSR 66 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~ 66 (80)
|+++|++||.|..+.++. .+|||||+|.+.++|+.|+..||+..+.|+.|.|.|+....
T Consensus 27 L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 27 IQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp HHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred HHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 789999999999998753 56899999999999999999999999999999999997654
No 167
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.57 E-value=4.9e-15 Score=74.03 Aligned_cols=59 Identities=17% Similarity=0.364 Sum_probs=53.5
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRY 68 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 68 (80)
|+++|++||.|..+.+. +|||||+|.+.++|..|+..||+..+.|+.|.|.++.+....
T Consensus 28 l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 86 (96)
T 2kvi_A 28 LFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNARP 86 (96)
T ss_dssp HHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC-
T ss_pred HHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCCCC
Confidence 78999999999999883 689999999999999999999999999999999999876543
No 168
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.56 E-value=7.6e-16 Score=78.42 Aligned_cols=63 Identities=16% Similarity=0.280 Sum_probs=58.0
Q ss_pred HHHHhccCCc---eeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCC
Q 035722 2 IADAFSQFGQ---VTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSR 66 (80)
Q Consensus 2 l~~~f~~~G~---i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~ 66 (80)
|+++|+.||. |..+.++.++. ++++|||||+|.+.++++.|+. +|+..+.|+.|+|.++.+..
T Consensus 28 l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~~~ 93 (107)
T 2lmi_A 28 VLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYEINNED 93 (107)
T ss_dssp HHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEECCHHH
T ss_pred HHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEECCHHH
Confidence 7899999988 89999999986 9999999999999999999999 89999999999999987543
No 169
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.56 E-value=3.9e-14 Score=73.95 Aligned_cols=60 Identities=27% Similarity=0.381 Sum_probs=53.3
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeE-EEEEECCHHHHHHHHHhhCCeeecC--EEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGY-GSVTFSTEEEAQKALTEMNGKLLDG--RVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~-~~v~f~~~~~~~~a~~~l~~~~~~~--~~i~v~~~~~~~~ 67 (80)
|+++|++||.|.++.+.. + .|| |||+|.+.++|..|++.|||..+.| +.|+|.+++++..
T Consensus 42 L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l 104 (124)
T 2e5i_A 42 LYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRL 104 (124)
T ss_dssp HHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCC
T ss_pred HHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCcc
Confidence 789999999999998864 2 276 9999999999999999999999988 6899999987753
No 170
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.55 E-value=1.3e-14 Score=80.82 Aligned_cols=65 Identities=31% Similarity=0.438 Sum_probs=58.2
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSR 66 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~ 66 (80)
|+++|++||.|.++.++.++.++.++|||||+|.+.++|..|++.+++..+.|+.|.|.++.+..
T Consensus 45 l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~ 109 (216)
T 2qfj_A 45 IRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIG 109 (216)
T ss_dssp HHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCG
T ss_pred HHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCcc
Confidence 78999999999999999998899999999999999999999999999999999999999876654
No 171
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.55 E-value=3.6e-14 Score=79.43 Aligned_cols=59 Identities=19% Similarity=0.350 Sum_probs=54.2
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~ 65 (80)
|+++|++||.|.+++++.+ .+|||||+|.+.++|+.|++.||+..+.|+.|.|.+++..
T Consensus 22 L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 22 VFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQP 80 (205)
T ss_dssp HHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred HHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCC
Confidence 7899999999999999765 3689999999999999999999999999999999998643
No 172
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.5e-14 Score=74.54 Aligned_cols=60 Identities=22% Similarity=0.344 Sum_probs=52.7
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeee-----cCEEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLL-----DGRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~-----~~~~i~v~~~~~~~~ 67 (80)
|+++|++||.|..+.++. .+|||||+|.+.++|+.|++.|||..+ .|++|.|.++...+.
T Consensus 44 L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 44 LLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQW 108 (114)
T ss_dssp HHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCCCC
T ss_pred HHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccCcc
Confidence 789999999999987753 268999999999999999999999988 689999999875543
No 173
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.55 E-value=2.9e-14 Score=77.10 Aligned_cols=61 Identities=30% Similarity=0.377 Sum_probs=55.8
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeec---CEEEEEEecC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLD---GRVLFVDNVR 63 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~---~~~i~v~~~~ 63 (80)
|+++|++||.|..+.++.++ ++.++|||||+|.+.++|.+|+..||+..+. +++|.|.|+.
T Consensus 112 l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 112 IRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 78999999999999999997 6899999999999999999999999998766 3999999873
No 174
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.5e-14 Score=72.11 Aligned_cols=61 Identities=25% Similarity=0.376 Sum_probs=54.8
Q ss_pred HHHHhccCCceeEE-EEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCC
Q 035722 2 IADAFSQFGQVTKA-TIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSR 66 (80)
Q Consensus 2 l~~~f~~~G~i~~~-~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~ 66 (80)
|+++|++||.|..+ .++.++.++. |||+|.+.++|..|+..||+..+.|+.|.|.++.+..
T Consensus 32 l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 93 (96)
T 2e44_A 32 LDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDEM 93 (96)
T ss_dssp HHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCCC
T ss_pred HHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCccc
Confidence 78999999999999 5887765443 9999999999999999999999999999999998874
No 175
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.54 E-value=4e-14 Score=76.80 Aligned_cols=60 Identities=23% Similarity=0.370 Sum_probs=54.4
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSR 66 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~ 66 (80)
|+++|++||.|..+ ..++.++|||||+|.+.++|..|+..||+..+.|+.|.|.++.+++
T Consensus 116 l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k~ 175 (175)
T 1fje_B 116 LKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 175 (175)
T ss_dssp HHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSCC
T ss_pred HHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCCC
Confidence 78899999988766 4478899999999999999999999999999999999999998763
No 176
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=9.4e-15 Score=72.71 Aligned_cols=56 Identities=16% Similarity=0.223 Sum_probs=51.2
Q ss_pred HHHHhccC-CceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 2 IADAFSQF-GQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~-G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
|+++|++| |+|.+| ++ |+|||.|.+.++|++|++.|++..+.|++|+|.+++....
T Consensus 30 L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd 86 (96)
T 2diu_A 30 LRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNRE 86 (96)
T ss_dssp HHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCC
T ss_pred HHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCcc
Confidence 67899999 599998 33 8999999999999999999999999999999999987754
No 177
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.54 E-value=1.6e-15 Score=80.54 Aligned_cols=64 Identities=20% Similarity=0.210 Sum_probs=57.8
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRY 68 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 68 (80)
|+++|++|| +..|.++.|+. ++++|||||+|.+.++|+.|+ .+|+..+.|+.|+|..+.+....
T Consensus 63 L~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~~ 126 (139)
T 2hgn_A 63 IYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGAS 126 (139)
T ss_dssp HHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC-
T ss_pred HHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCCC
Confidence 789999999 77999999985 999999999999999999999 68999999999999998876653
No 178
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.54 E-value=1.1e-13 Score=76.96 Aligned_cols=63 Identities=21% Similarity=0.131 Sum_probs=56.2
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSR 66 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~ 66 (80)
|+++|++||.|..+.++.+. ++.++|||||+|.+.++|..|+..+ +..+.|+.|.|.++..-.
T Consensus 126 L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y~ 188 (193)
T 2voo_A 126 IKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDYF 188 (193)
T ss_dssp HHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC-
T ss_pred HHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHHH
Confidence 78999999999999999987 5889999999999999999999865 569999999999876543
No 179
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=1.1e-14 Score=75.96 Aligned_cols=62 Identities=23% Similarity=0.251 Sum_probs=55.7
Q ss_pred HHHHhccCCce----eEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCC
Q 035722 2 IADAFSQFGQV----TKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65 (80)
Q Consensus 2 l~~~f~~~G~i----~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~ 65 (80)
|+++|++||.| ..|.++.++ +++++|||||+|.+.++++.|+.. |+..+.|+.|+|..+.+.
T Consensus 40 l~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~a~~~ 105 (123)
T 2dha_A 40 VVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFRSTAA 105 (123)
T ss_dssp HHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEEECHH
T ss_pred HHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEECCHH
Confidence 78999999875 689999985 899999999999999999999996 999999999999987543
No 180
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=1.5e-14 Score=74.38 Aligned_cols=60 Identities=15% Similarity=0.246 Sum_probs=52.5
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCC--eeecCEEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNG--KLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~--~~~~~~~i~v~~~~~~~~ 67 (80)
|+++|++||.|.++.+++ .+|||||+|.+.++|..|+..|++ ..+.|+.|.|.++.....
T Consensus 43 L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~ 104 (112)
T 1x4f_A 43 VLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKK 104 (112)
T ss_dssp HHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSS
T ss_pred HHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccccc
Confidence 788999999999999864 368999999999999999998864 569999999999977654
No 181
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.52 E-value=1e-13 Score=80.17 Aligned_cols=62 Identities=23% Similarity=0.314 Sum_probs=56.7
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSR 66 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~ 66 (80)
|.++|++||.|.+|.+.. ++.++|||||+|.+.++|..|+..+|+..+.|+.|+|.++.+..
T Consensus 30 L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 91 (282)
T 3pgw_A 30 LYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDS 91 (282)
T ss_pred HHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEeccCc
Confidence 558999999999998875 67899999999999999999999999999999999999997654
No 182
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.51 E-value=4.4e-14 Score=72.73 Aligned_cols=59 Identities=22% Similarity=0.343 Sum_probs=50.8
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEE-----EEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRV-----LFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~-----i~v~~~~~~~~ 67 (80)
|+++|.+||+|..+.++.+ |||||+|.+.++|+.|++.||+..+.|+. |+|..+.+...
T Consensus 33 l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~~~~ 96 (115)
T 3beg_B 33 LKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSP 96 (115)
T ss_dssp HHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC----
T ss_pred HHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCCCCC
Confidence 7899999999999998765 89999999999999999999999999988 78887766543
No 183
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.50 E-value=1.3e-13 Score=67.88 Aligned_cols=58 Identities=19% Similarity=0.236 Sum_probs=52.7
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSR 66 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~ 66 (80)
|+++|++| .|.++.+. .++|||||+|.+.++|+.|+..+|+..+.|+.|+|+++....
T Consensus 22 l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 22 VHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp HHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred HHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 78999999 99999873 578999999999999999999999999999999999986543
No 184
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.50 E-value=1.3e-13 Score=74.50 Aligned_cols=65 Identities=23% Similarity=0.363 Sum_probs=57.1
Q ss_pred HHHHhccCCceeEEEEeecCCCC--CeeeEEEEEECCHHHHHHHHHhhCCeeec---CEEEEEEecCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKN--TSKGYGSVTFSTEEEAQKALTEMNGKLLD---GRVLFVDNVRPSR 66 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~--~~~g~~~v~f~~~~~~~~a~~~l~~~~~~---~~~i~v~~~~~~~ 66 (80)
|+++|++||+|.++.++.++.++ .++|||||+|.+.++|..|++.+++..+. ++.+.+.++.+..
T Consensus 20 l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~ 89 (175)
T 3nmr_A 20 LRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEK 89 (175)
T ss_dssp HHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGC
T ss_pred HHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccccccc
Confidence 78999999999999999998776 89999999999999999999999998765 5777777766544
No 185
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.48 E-value=1.1e-13 Score=79.20 Aligned_cols=60 Identities=27% Similarity=0.373 Sum_probs=52.5
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeee------------cCEEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLL------------DGRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~------------~~~~i~v~~~~~~~~ 67 (80)
|+.+|++||+|.+|.++. ++|||||+|.+.++|+.|++.|++..+ .|+.|.|.|+.+.+.
T Consensus 160 L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 160 IRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp HHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred HHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCC
Confidence 789999999999999875 378999999999999999999999999 899999999986654
No 186
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.47 E-value=3e-13 Score=66.79 Aligned_cols=57 Identities=25% Similarity=0.465 Sum_probs=45.4
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCee--ecCEEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKL--LDGRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~--~~~~~i~v~~~~~~~~ 67 (80)
|+++|++||.|.++.++.+ ++|||||+|.+.++|+. +++.. +.|+.|.|.++.++..
T Consensus 28 L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~k~~ 86 (89)
T 3d2w_A 28 LQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEPKHN 86 (89)
T ss_dssp HHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC----
T ss_pred HHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCCCCc
Confidence 7899999999999998764 68999999999999884 34544 5699999999987654
No 187
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.47 E-value=1.8e-13 Score=79.50 Aligned_cols=66 Identities=18% Similarity=0.308 Sum_probs=53.9
Q ss_pred HHHHhccCC-ceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCC
Q 035722 2 IADAFSQFG-QVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRY 68 (80)
Q Consensus 2 l~~~f~~~G-~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 68 (80)
|+++|.+|| .|..+.++.++. +.++|||||.|.+.++|..|+..+++..+.|+.|.|.++.+....
T Consensus 134 l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 200 (292)
T 2ghp_A 134 IRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKS 200 (292)
T ss_dssp HHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC---
T ss_pred HHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCccc
Confidence 788999999 999999998874 788999999999999999999999999999999999999877653
No 188
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.47 E-value=1.3e-13 Score=74.23 Aligned_cols=63 Identities=24% Similarity=0.527 Sum_probs=57.5
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSR 66 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~ 66 (80)
|+++|++||.|.++.++.++.++.++|||||+|.+.++|..|+.. +..+.|+.|.+.++.+..
T Consensus 20 l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~~~ 82 (167)
T 2cjk_A 20 LREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIPRD 82 (167)
T ss_dssp HHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECCCHH
T ss_pred HHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccccchh
Confidence 789999999999999999988999999999999999999999984 678999999999876543
No 189
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.46 E-value=3.4e-14 Score=74.34 Aligned_cols=60 Identities=25% Similarity=0.304 Sum_probs=54.1
Q ss_pred HHHHhccCCcee--EEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCC
Q 035722 2 IADAFSQFGQVT--KATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64 (80)
Q Consensus 2 l~~~f~~~G~i~--~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~ 64 (80)
|+++|++| .|. .|.++.|+. |+++|||||+|.+.++|+.|+.. ++..+.|+.|+|..+.+
T Consensus 59 L~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~a~~ 120 (126)
T 2hgm_A 59 IVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFKSSQ 120 (126)
T ss_dssp HHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEEECH
T ss_pred HHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEECCH
Confidence 78999999 577 899999986 99999999999999999999985 77999999999998754
No 190
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=2.2e-13 Score=69.93 Aligned_cols=58 Identities=21% Similarity=0.330 Sum_probs=48.2
Q ss_pred HHHHhccCCceeEEEEeecCCC---CCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEec
Q 035722 2 IADAFSQFGQVTKATIIMDKGK---NTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNV 62 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~---~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~ 62 (80)
|+++|++||.|. +.++.++.+ |.++|||||+|.+.++|+.|+..+ ..++|+.+.+..+
T Consensus 25 L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~--~~~~G~~~~~~~~ 85 (114)
T 2dnl_A 25 ITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC--LEEDGKLYLCVSS 85 (114)
T ss_dssp HHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS--EEETTEEEEEECC
T ss_pred HHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh--hhcCCcEEEeccC
Confidence 789999999999 888888766 789999999999999999999987 2366666655543
No 191
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.8e-13 Score=67.20 Aligned_cols=63 Identities=25% Similarity=0.427 Sum_probs=51.6
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRRYNTD 71 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~ 71 (80)
|+++|++||.|.++.++.+ ++|||||+|.+.++|+.+... ...+.|+.|.|.++.++....+.
T Consensus 22 l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~~~~~~ 84 (88)
T 1wf0_A 22 LREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKHNSNSG 84 (88)
T ss_dssp HHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCCCCCSC
T ss_pred HHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCCCCCCC
Confidence 7899999999999998754 689999999999999865432 45568999999999888765443
No 192
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.42 E-value=1.2e-12 Score=75.33 Aligned_cols=65 Identities=32% Similarity=0.517 Sum_probs=57.4
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCC-eeec---CEEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNG-KLLD---GRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~-~~~~---~~~i~v~~~~~~~~ 67 (80)
|+++|++||.|..+.++.++ ++.++|||||+|.+.++|..|+..+|+ ..+. +++|.|.++.+...
T Consensus 113 l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 113 LEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDD 181 (261)
T ss_dssp HHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEES
T ss_pred HHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccCc
Confidence 78999999999999999995 899999999999999999999999954 4444 89999999887643
No 193
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.41 E-value=1.1e-12 Score=75.78 Aligned_cols=58 Identities=17% Similarity=0.296 Sum_probs=53.2
Q ss_pred CHHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeec-CEEEEEEecC
Q 035722 1 MIADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLD-GRVLFVDNVR 63 (80)
Q Consensus 1 ~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~-~~~i~v~~~~ 63 (80)
.|+++|++||.|..+.++.++ +|||||+|.+.++|..|+..||+..+. |+.|+|.|++
T Consensus 223 ~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 223 MLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred HHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 378999999999999998654 589999999999999999999999999 9999999985
No 194
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.41 E-value=1.1e-12 Score=73.83 Aligned_cols=62 Identities=24% Similarity=0.385 Sum_probs=56.1
Q ss_pred HHHHhccCCceeEEEEeecC----CCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecC
Q 035722 2 IADAFSQFGQVTKATIIMDK----GKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~----~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~ 63 (80)
|+..|++||.|.++.++.+. .++.++|++||+|.+.++|.+|+..|||..+.|+.|.+.++.
T Consensus 146 l~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 146 VTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 67889999999999998654 345899999999999999999999999999999999999875
No 195
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=2.5e-12 Score=63.46 Aligned_cols=55 Identities=33% Similarity=0.445 Sum_probs=50.8
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~ 65 (80)
|.+.|++||.|..++++.++ +||+|.+.+.|..|++ |||..+.|+.|+|+++.|.
T Consensus 32 L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 32 LLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNRTITIALKSPS 86 (91)
T ss_dssp HHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCCS
T ss_pred HHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCCC
Confidence 67899999999999998874 8999999999999999 9999999999999998764
No 196
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.40 E-value=8e-13 Score=74.74 Aligned_cols=59 Identities=24% Similarity=0.428 Sum_probs=55.0
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~ 65 (80)
|+++|++||.|.++.++.++ +|||||+|.+.++|..|++.+++..+.|+.|.|.++.+.
T Consensus 52 L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 52 LFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp HHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred HHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 78999999999999998875 789999999999999999999999999999999999765
No 197
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.37 E-value=1.8e-12 Score=63.32 Aligned_cols=53 Identities=25% Similarity=0.475 Sum_probs=47.8
Q ss_pred HHHHhccC----C-------ceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEe
Q 035722 2 IADAFSQF----G-------QVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDN 61 (80)
Q Consensus 2 l~~~f~~~----G-------~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~ 61 (80)
|+++|++| | .|.++.+..+ +|||||+|.+.++|..|+ .+|+..+.|+.|+|+.
T Consensus 23 l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 23 MMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRR 86 (87)
T ss_dssp HHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEETTEECEEEC
T ss_pred HHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEECCeEEEEeC
Confidence 78899999 8 8999987644 689999999999999999 8999999999999974
No 198
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.37 E-value=6.9e-13 Score=73.25 Aligned_cols=59 Identities=24% Similarity=0.428 Sum_probs=54.7
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~ 65 (80)
|+++|++||.|.++.++.++ +|||||+|.+.++|..|+..+++..+.|+.|.|.++.+.
T Consensus 21 l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 21 LFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp HHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred HHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 78999999999999987765 789999999999999999999999999999999999755
No 199
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.35 E-value=1.7e-13 Score=74.35 Aligned_cols=64 Identities=20% Similarity=0.326 Sum_probs=53.9
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
|+++|.+||.+.. .++.+..++.++|||||+|.+.++|..|++ +++..+.|+.|.|.++.+...
T Consensus 30 l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~~~~~~ 93 (175)
T 1fje_B 30 LKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDS 93 (175)
T ss_dssp HHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCCCSSC
T ss_pred HHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecCCCccc
Confidence 6778888887766 334444578889999999999999999995 999999999999999987654
No 200
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.33 E-value=1.3e-12 Score=72.18 Aligned_cols=59 Identities=20% Similarity=0.249 Sum_probs=53.6
Q ss_pred HHHHhccCC-ceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeec-CEEEEEEecCCC
Q 035722 2 IADAFSQFG-QVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLD-GRVLFVDNVRPS 65 (80)
Q Consensus 2 l~~~f~~~G-~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~-~~~i~v~~~~~~ 65 (80)
|+++|++|| .|..+.+..+. +|+|||+|.+.++|..|+..||+..+. |+.|.|.|++++
T Consensus 137 l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 137 LKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp HHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred HHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 788999999 99999886542 689999999999999999999999999 999999999875
No 201
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.32 E-value=3.7e-12 Score=72.00 Aligned_cols=59 Identities=20% Similarity=0.249 Sum_probs=53.5
Q ss_pred HHHHhccCC-ceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeec-CEEEEEEecCCC
Q 035722 2 IADAFSQFG-QVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLD-GRVLFVDNVRPS 65 (80)
Q Consensus 2 l~~~f~~~G-~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~-~~~i~v~~~~~~ 65 (80)
|+++|++|| .|..+.++.+ .+|+|||+|.+.++|..|+..||+..+. |+.|.|.|++++
T Consensus 168 l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 168 LKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp HHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred HHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 789999999 9999988543 3689999999999999999999999999 999999999875
No 202
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.29 E-value=1.4e-11 Score=70.78 Aligned_cols=58 Identities=22% Similarity=0.432 Sum_probs=53.0
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~ 65 (80)
|+++|++||.|..+.+..+ +|||||.|.+.++|..|+..+++..+.|+.|.|.++.+.
T Consensus 39 l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 96 (261)
T 3sde_A 39 FKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHG 96 (261)
T ss_dssp HHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred HHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccC
Confidence 7899999999999988543 689999999999999999999999999999999998764
No 203
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.28 E-value=6.4e-12 Score=70.28 Aligned_cols=59 Identities=12% Similarity=0.186 Sum_probs=51.0
Q ss_pred HHHHhccCCce--eEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCE----EEEEEec
Q 035722 2 IADAFSQFGQV--TKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGR----VLFVDNV 62 (80)
Q Consensus 2 l~~~f~~~G~i--~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~----~i~v~~~ 62 (80)
|+++|++||.| ..++++.+. +.++|+|||+|.+.++|..|+..||+..+.|+ ++.|+++
T Consensus 140 L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 140 FFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred HHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 78999999999 888887775 45669999999999999999999999999885 5666654
No 204
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=2.1e-11 Score=60.49 Aligned_cols=54 Identities=19% Similarity=0.349 Sum_probs=49.7
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRP 64 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~ 64 (80)
|.+.|.+||.+..+++..|+ +||+|.+.+.|.+|++ |||..+.|+.|+|++..|
T Consensus 41 L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 41 LMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKGRAVKISGPSS 94 (95)
T ss_dssp HHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETTEEEEEECCCC
T ss_pred HHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCCeEEEEeccCC
Confidence 67899999999999998875 9999999999999999 999999999999997654
No 205
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.18 E-value=1.2e-10 Score=63.95 Aligned_cols=57 Identities=23% Similarity=0.440 Sum_probs=48.4
Q ss_pred HHHHhccC----C-------ceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCC
Q 035722 2 IADAFSQF----G-------QVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPS 65 (80)
Q Consensus 2 l~~~f~~~----G-------~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~ 65 (80)
|+++|++| | .|..+.+ +.++|||||+|.+.++|..|+ .+|+..+.|+.|.|.++.+.
T Consensus 21 l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 21 MMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDY 88 (198)
T ss_dssp HHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEEECCCCC
T ss_pred HHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeCCCCC
Confidence 78899999 4 4555544 445789999999999999999 79999999999999998765
No 206
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.16 E-value=1e-10 Score=69.93 Aligned_cols=56 Identities=25% Similarity=0.425 Sum_probs=47.2
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeec---CE--EEEEEecC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLD---GR--VLFVDNVR 63 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~---~~--~i~v~~~~ 63 (80)
|+++|++||+|.++.+.. .+|||||+|.+.++|+.|++.|||..+. |+ .+.+.++.
T Consensus 37 L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 37 LLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 97 (345)
T ss_dssp HHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECS
T ss_pred HHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEee
Confidence 789999999999886642 4689999999999999999999999873 34 57777764
No 207
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.14 E-value=2.3e-10 Score=61.64 Aligned_cols=58 Identities=21% Similarity=0.403 Sum_probs=49.1
Q ss_pred HHHHhccC----C-------ceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCC
Q 035722 2 IADAFSQF----G-------QVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSR 66 (80)
Q Consensus 2 l~~~f~~~----G-------~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~ 66 (80)
|+++|++| | .|.++.+. .++|||||+|.+.++|..|+ .+|+..+.|+.|.|.++.+..
T Consensus 21 l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~ 89 (172)
T 2g4b_A 21 MMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQ 89 (172)
T ss_dssp HHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSSCC
T ss_pred HHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCcccC
Confidence 78899999 6 66666653 34789999999999999999 799999999999999876554
No 208
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.69 E-value=4.6e-08 Score=50.72 Aligned_cols=55 Identities=16% Similarity=0.218 Sum_probs=46.5
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECC-HHHHHHHHHhhC--CeeecCEEEEEEec
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFST-EEEAQKALTEMN--GKLLDGRVLFVDNV 62 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~-~~~~~~a~~~l~--~~~~~~~~i~v~~~ 62 (80)
|+++|++||+|..|.+..+.. .|||.|.+ +.+|..|+..++ +..|.|..+.++..
T Consensus 36 Lke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 36 LHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp HHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred HHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 789999999999999988764 49999999 899999999885 56788877777643
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.06 E-value=2.4e-05 Score=39.83 Aligned_cols=53 Identities=21% Similarity=0.291 Sum_probs=46.0
Q ss_pred HHHHhccC-----CceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEE
Q 035722 2 IADAFSQF-----GQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVD 60 (80)
Q Consensus 2 l~~~f~~~-----G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~ 60 (80)
++.+..++ |.+..+.+..|- +-|++.|.+...|.+|.-.|+|..+.|+.|++.
T Consensus 38 Ir~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 38 ICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp HHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred HHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 56777778 999999887764 369999999999999998899999999999986
No 210
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.74 E-value=0.0002 Score=36.94 Aligned_cols=55 Identities=20% Similarity=0.394 Sum_probs=43.7
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecC-EEEEEEecC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDG-RVLFVDNVR 63 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~-~~i~v~~~~ 63 (80)
+...|++||.|.+.... ....+-.+.|.+..+|++|+. .||..+.+ -.|-|....
T Consensus 40 VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 40 ILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp HHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECC
T ss_pred HHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECC
Confidence 56789999999988751 123589999999999999999 59999985 666776643
No 211
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=97.68 E-value=6.2e-05 Score=39.75 Aligned_cols=41 Identities=22% Similarity=0.236 Sum_probs=36.9
Q ss_pred CCCeeeEEEEEECCHHHHHHHHHhh-CCeeecCEEEEEEecCC
Q 035722 23 KNTSKGYGSVTFSTEEEAQKALTEM-NGKLLDGRVLFVDNVRP 64 (80)
Q Consensus 23 ~~~~~g~~~v~f~~~~~~~~a~~~l-~~~~~~~~~i~v~~~~~ 64 (80)
....+|+++++|.+.+.|++|+..+ |+..++| .+.+.++.+
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 3567899999999999999999999 9999999 999998765
No 212
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=97.58 E-value=0.0002 Score=38.02 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=28.3
Q ss_pred EEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCC
Q 035722 14 KATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNG 49 (80)
Q Consensus 14 ~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~ 49 (80)
.+++.++. ..++||+||+|.+.++|++|+..+++
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~ 35 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYAN 35 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcc
Confidence 45677775 36899999999999999999987765
No 213
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.42 E-value=0.0019 Score=32.49 Aligned_cols=60 Identities=12% Similarity=0.079 Sum_probs=50.2
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
++++|..|+++........- . -..|.|.++++|.+|-..|++..+.|+.++|-++.+...
T Consensus 27 ~e~Lf~~~~~~~tF~~lkSF--R----Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~~~ 86 (104)
T 1wey_A 27 FESLFRTYDKDTTFQYFKSF--K----RVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTLHI 86 (104)
T ss_dssp HHHHHHTTCSSCEEEEETTT--T----EEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCSSC
T ss_pred HHHHHHhhCcCcceeecCcc--e----EEEEEeCChHHHHHHHHHhccceecCceeEEEecCCCCC
Confidence 57889999998887665542 1 357999999999999999999999999999999986653
No 214
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.29 E-value=0.00027 Score=37.00 Aligned_cols=61 Identities=20% Similarity=0.382 Sum_probs=43.4
Q ss_pred HHHHhccCCceeE-EEEeec--------CCCCC-----eeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecC
Q 035722 2 IADAFSQFGQVTK-ATIIMD--------KGKNT-----SKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63 (80)
Q Consensus 2 l~~~f~~~G~i~~-~~~~~~--------~~~~~-----~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~ 63 (80)
+-+.|++||.|.+ .....+ +...+ ...|-.++|.++.+|.+||. .||..+.|.-|-|....
T Consensus 23 VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 23 VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAVFNGVLLGVIPYT 97 (132)
T ss_dssp HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCEETTEECEEEECC
T ss_pred HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeEeCcEEEEEEECC
Confidence 4578999999876 211110 00011 24588999999999999999 59999999888887664
No 215
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.15 E-value=0.016 Score=28.89 Aligned_cols=38 Identities=29% Similarity=0.351 Sum_probs=31.1
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhh
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEM 47 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l 47 (80)
|.++|+.|| -..|+.+.|- -||+.|.+++.|..|+..+
T Consensus 32 I~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 32 LYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp HHHHHTTTC-SCCCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred HHHHhhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 788999999 4555666664 7999999999999999865
No 216
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.79 E-value=0.016 Score=28.94 Aligned_cols=39 Identities=26% Similarity=0.339 Sum_probs=31.9
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMN 48 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~ 48 (80)
|.++|+.|| -..|..+.|- -||+.|.+++.|..|+..+.
T Consensus 22 i~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 22 LYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp HHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred HHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 788999999 5566666664 79999999999999998764
No 217
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.55 E-value=0.087 Score=26.46 Aligned_cols=57 Identities=21% Similarity=0.243 Sum_probs=42.7
Q ss_pred HHHHhcc-----CCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 2 IADAFSQ-----FGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 2 l~~~f~~-----~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
|+-+|+. -|++..+.... +-|+|+|.+...+++.+.. ..+.+.+..|.|.-..+...
T Consensus 25 L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~~~~~ 86 (104)
T 2dhx_A 25 LTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAPPRAP 86 (104)
T ss_dssp HHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECCCCCC
T ss_pred heEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCCCCCc
Confidence 4556765 26788876522 3689999999999999984 47889999999976555543
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.81 E-value=0.044 Score=34.34 Aligned_cols=40 Identities=20% Similarity=0.245 Sum_probs=29.8
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHh
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTE 46 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~ 46 (80)
|.++|++||+|.++.+..+. | -|+.|+|.+.+.+..++..
T Consensus 69 l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 69 FLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHSS
T ss_pred HHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHhc
Confidence 78899999999998775543 2 6999999999988877653
No 219
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=79.77 E-value=5 Score=25.48 Aligned_cols=40 Identities=28% Similarity=0.331 Sum_probs=30.6
Q ss_pred HHHHhccCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCC
Q 035722 2 IADAFSQFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNG 49 (80)
Q Consensus 2 l~~~f~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~ 49 (80)
|.+.|+.||. ..|..+.+. .++|.|.+.+.+..++..+..
T Consensus 456 i~~~fs~fg~-v~V~widdt-------~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 456 LYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp HHHHGGGGCC-CEEEECSSS-------EEEEECSCHHHHHHHHHHHTT
T ss_pred HHHHHHhcCC-EEEEEEcCC-------eEEEEECCHHHHHHHHHHHHh
Confidence 6788999994 455444432 699999999999999988753
No 220
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=76.19 E-value=3.4 Score=18.86 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=23.7
Q ss_pred EEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecC
Q 035722 29 YGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVR 63 (80)
Q Consensus 29 ~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~ 63 (80)
|.|+.... ..+..++..+++..+.|+.+.++.+.
T Consensus 42 ~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 42 ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp CEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred cEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 78888765 45677888899999999998887653
No 221
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=68.12 E-value=9.3 Score=18.84 Aligned_cols=36 Identities=8% Similarity=0.105 Sum_probs=28.2
Q ss_pred eEEEEEECCHHHHHHHHHhhCCeeecC-----EEEEEEecC
Q 035722 28 GYGSVTFSTEEEAQKALTEMNGKLLDG-----RVLFVDNVR 63 (80)
Q Consensus 28 g~~~v~f~~~~~~~~a~~~l~~~~~~~-----~~i~v~~~~ 63 (80)
..||+.|.+.++...-...++|..+-+ ..-.|++|.
T Consensus 54 SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~VE~AP 94 (97)
T 2l08_A 54 SRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAVVEFAP 94 (97)
T ss_dssp CCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEEEEECC
T ss_pred eEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeEEEecC
Confidence 568999999999999999999988654 234566553
No 222
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=61.91 E-value=12 Score=18.06 Aligned_cols=60 Identities=7% Similarity=0.042 Sum_probs=37.9
Q ss_pred HHhccCCceeEEEEeecCCCCC--eeeEEEEEECCHHHHHHHHHhhCCeeecC-----EEEEEEecC
Q 035722 4 DAFSQFGQVTKATIIMDKGKNT--SKGYGSVTFSTEEEAQKALTEMNGKLLDG-----RVLFVDNVR 63 (80)
Q Consensus 4 ~~f~~~G~i~~~~~~~~~~~~~--~~g~~~v~f~~~~~~~~a~~~l~~~~~~~-----~~i~v~~~~ 63 (80)
+.++....+..........+.+ ..+-||+.|.+.+++..-...++|+.+-+ ..-.|++|.
T Consensus 20 ~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~VE~AP 86 (91)
T 1uw4_A 20 EHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAP 86 (91)
T ss_dssp HHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECEEEECS
T ss_pred HHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeEEEEcC
Confidence 3444555544444444332222 33679999999999999999999988654 233555553
No 223
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=50.34 E-value=21 Score=17.19 Aligned_cols=26 Identities=19% Similarity=0.173 Sum_probs=19.6
Q ss_pred ceeEEEEeecCCCCCeeeEEEEEECC
Q 035722 11 QVTKATIIMDKGKNTSKGYGSVTFST 36 (80)
Q Consensus 11 ~i~~~~~~~~~~~~~~~g~~~v~f~~ 36 (80)
+|.++++..-...++.+++|-++|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 45667665555578899999999975
No 224
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=47.53 E-value=26 Score=17.37 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=19.5
Q ss_pred ceeEEEEeecCCCCCeeeEEEEEECC
Q 035722 11 QVTKATIIMDKGKNTSKGYGSVTFST 36 (80)
Q Consensus 11 ~i~~~~~~~~~~~~~~~g~~~v~f~~ 36 (80)
+|.++++..-...++.+++|-|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 45677765555568899999999975
No 225
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=45.78 E-value=22 Score=17.69 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=21.9
Q ss_pred CeeeEEEEEECCHHHHHHHHHhhCCe
Q 035722 25 TSKGYGSVTFSTEEEAQKALTEMNGK 50 (80)
Q Consensus 25 ~~~g~~~v~f~~~~~~~~a~~~l~~~ 50 (80)
..+||-||+=.+..++..|+..+.+.
T Consensus 49 ~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 49 HVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp TCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred CCceEEEEEeCCHHHHHHHHhcccce
Confidence 36899999999999999999876443
No 226
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=44.39 E-value=30 Score=17.30 Aligned_cols=26 Identities=19% Similarity=0.173 Sum_probs=19.0
Q ss_pred ceeEEEEeecCCCCCeeeEEEEEECC
Q 035722 11 QVTKATIIMDKGKNTSKGYGSVTFST 36 (80)
Q Consensus 11 ~i~~~~~~~~~~~~~~~g~~~v~f~~ 36 (80)
+|.++++..-...++.+++|-|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 35566665555578899999999975
No 227
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=40.34 E-value=32 Score=16.42 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=21.0
Q ss_pred eeeEEEEEECCHHHHHHHHHhhCCe
Q 035722 26 SKGYGSVTFSTEEEAQKALTEMNGK 50 (80)
Q Consensus 26 ~~g~~~v~f~~~~~~~~a~~~l~~~ 50 (80)
-+||-|++....++...+++...+.
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cCCEEEEEEecchhHHHHHHCCCCc
Confidence 6899999999998888888776654
No 228
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=34.03 E-value=39 Score=16.53 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=23.2
Q ss_pred eEEEEEECCHHHHHHHHHhhCCe-------eecCEEEEEE
Q 035722 28 GYGSVTFSTEEEAQKALTEMNGK-------LLDGRVLFVD 60 (80)
Q Consensus 28 g~~~v~f~~~~~~~~a~~~l~~~-------~~~~~~i~v~ 60 (80)
|-+.+.|.+.++...|+..|-.+ .+.|..+.|-
T Consensus 47 gqamirfqnsdeqrlaiqkllnhnnnklqieirgqicdvi 86 (129)
T 4eyt_A 47 GQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQICDVI 86 (129)
T ss_dssp SCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEEEEEE
T ss_pred CeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcceeeeee
Confidence 46889999999999998876222 2556555554
No 229
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=33.16 E-value=49 Score=16.47 Aligned_cols=50 Identities=16% Similarity=0.183 Sum_probs=31.8
Q ss_pred CCceeEEEEeecCCCCCeeeEEEEEECCHHHHHHHHHhhCCeeecCEEEEEEecCCCCC
Q 035722 9 FGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQKALTEMNGKLLDGRVLFVDNVRPSRR 67 (80)
Q Consensus 9 ~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~a~~~l~~~~~~~~~i~v~~~~~~~~ 67 (80)
||.-..+....+ -..|...+.++.++|++.|+.. ...+.++|-...+...
T Consensus 41 fGq~ldL~y~n~--------EllIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~~~~~ 90 (103)
T 2cu1_A 41 FGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVINGST 90 (103)
T ss_dssp HSSCEEEEECSS--------SSCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEECCCC
T ss_pred hCCeeeEEEecc--------eEEEeccCHHHHHHHHHHHccC-CcccceEEEEecCCCC
Confidence 566666655421 2568888999999999987554 3334456655555543
No 230
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=30.56 E-value=65 Score=18.00 Aligned_cols=26 Identities=8% Similarity=-0.036 Sum_probs=22.7
Q ss_pred CeeeEEEEEECCHHHHHHHHHhhCCe
Q 035722 25 TSKGYGSVTFSTEEEAQKALTEMNGK 50 (80)
Q Consensus 25 ~~~g~~~v~f~~~~~~~~a~~~l~~~ 50 (80)
..+||-||+=.+...+..|+..+.+.
T Consensus 147 ~lkGYIyVEA~~~~~V~~ai~Gi~~v 172 (200)
T 2exu_A 147 NYTGRIYIEAPKQSVIEKFCNGVPDI 172 (200)
T ss_dssp TSTTEEEEECSCHHHHHHHHTTCTTE
T ss_pred CCcEEEEEEECCHHHHHHHHhhhhhh
Confidence 36899999999999999999987664
No 231
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=29.06 E-value=19 Score=12.76 Aligned_cols=9 Identities=22% Similarity=0.770 Sum_probs=5.5
Q ss_pred HHHHhccCC
Q 035722 2 IADAFSQFG 10 (80)
Q Consensus 2 l~~~f~~~G 10 (80)
+..+|.++|
T Consensus 17 vkklfkkwg 25 (26)
T 1ytr_A 17 VKKLFKKWG 25 (26)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHHcC
Confidence 456676665
No 232
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=26.57 E-value=75 Score=16.48 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=21.0
Q ss_pred eeeEEEEEECCHHHHHHHHHhhCCe
Q 035722 26 SKGYGSVTFSTEEEAQKALTEMNGK 50 (80)
Q Consensus 26 ~~g~~~v~f~~~~~~~~a~~~l~~~ 50 (80)
-+||-|+.....++.-.+++...+.
T Consensus 42 fPGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 42 VKGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCTTE
T ss_pred CCcEEEEEEEchHHHHHHHhCCCCE
Confidence 5799999999988888888877664
No 233
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=26.20 E-value=87 Score=17.11 Aligned_cols=40 Identities=15% Similarity=0.240 Sum_probs=25.0
Q ss_pred HHHHh--ccCCceeEEEEeecCCCCCeeeEEEEEECC-HHHHHHHH
Q 035722 2 IADAF--SQFGQVTKATIIMDKGKNTSKGYGSVTFST-EEEAQKAL 44 (80)
Q Consensus 2 l~~~f--~~~G~i~~~~~~~~~~~~~~~g~~~v~f~~-~~~~~~a~ 44 (80)
|.+.| +.|.++. +....++ ..+.|++.|.|.+ -.....|+
T Consensus 38 l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 38 LRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp HHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHH
T ss_pred HHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHH
Confidence 45655 7888755 4444554 3478999999975 33444444
No 234
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=24.09 E-value=1.4e+02 Score=18.87 Aligned_cols=34 Identities=18% Similarity=0.126 Sum_probs=22.6
Q ss_pred cCCceeEEEEeecCCCCCeeeEEEEEECCHHHHHH
Q 035722 8 QFGQVTKATIIMDKGKNTSKGYGSVTFSTEEEAQK 42 (80)
Q Consensus 8 ~~G~i~~~~~~~~~~~~~~~g~~~v~f~~~~~~~~ 42 (80)
.+|-|.++.+-..+. ......+++.|.+.+++..
T Consensus 226 ~lGiVt~~~l~l~p~-p~~~~~~~~~f~~~~~~~~ 259 (520)
T 1wvf_A 226 NYGICTKMGFWLMPK-PPVFKPFEVIFEDEADIVE 259 (520)
T ss_dssp SSCEEEEEEEECEEC-CSEEEEEEEEECCGGGHHH
T ss_pred ceEEEEEEEEEEEec-CCeEEEEEEEeCCHHHHHH
Confidence 578888888766652 3344456788888666544
No 235
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=23.46 E-value=31 Score=15.86 Aligned_cols=11 Identities=27% Similarity=0.564 Sum_probs=8.2
Q ss_pred eeeEEEEEECC
Q 035722 26 SKGYGSVTFST 36 (80)
Q Consensus 26 ~~g~~~v~f~~ 36 (80)
.+||+|+.-.+
T Consensus 13 ~KGfGFI~~~d 23 (74)
T 2k5n_A 13 DKGFGFIKDEN 23 (74)
T ss_dssp TTTEEEEEESS
T ss_pred CCCeEEEecCC
Confidence 36899998754
No 236
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=22.13 E-value=34 Score=15.73 Aligned_cols=11 Identities=27% Similarity=0.401 Sum_probs=8.4
Q ss_pred eeeEEEEEECC
Q 035722 26 SKGYGSVTFST 36 (80)
Q Consensus 26 ~~g~~~v~f~~ 36 (80)
.+||+|++-.+
T Consensus 11 ~KGfGFI~~~d 21 (74)
T 2kcm_A 11 AKKYGFIQGDD 21 (74)
T ss_dssp TTTEEEEEETT
T ss_pred CCCEEEEecCC
Confidence 36899998754
No 237
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=22.01 E-value=35 Score=15.25 Aligned_cols=11 Identities=36% Similarity=0.667 Sum_probs=8.2
Q ss_pred eeeEEEEEECC
Q 035722 26 SKGYGSVTFST 36 (80)
Q Consensus 26 ~~g~~~v~f~~ 36 (80)
.+||+|+.-.+
T Consensus 12 ~kGfGFI~~~~ 22 (67)
T 3cam_A 12 AKGFGFITPDE 22 (67)
T ss_dssp TTTEEEEEETT
T ss_pred CCCeEEEecCC
Confidence 36899998654
No 238
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=21.82 E-value=35 Score=15.11 Aligned_cols=11 Identities=36% Similarity=0.721 Sum_probs=7.9
Q ss_pred eeeEEEEEECC
Q 035722 26 SKGYGSVTFST 36 (80)
Q Consensus 26 ~~g~~~v~f~~ 36 (80)
.+||+|+.-.+
T Consensus 12 ~kGfGFI~~~~ 22 (66)
T 1c9o_A 12 EKGYGFIEVEG 22 (66)
T ss_dssp TTTEEEEEETT
T ss_pred CCCeEEEecCC
Confidence 36899997653
No 239
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=20.87 E-value=38 Score=15.41 Aligned_cols=11 Identities=36% Similarity=0.622 Sum_probs=8.0
Q ss_pred eeeEEEEEECC
Q 035722 26 SKGYGSVTFST 36 (80)
Q Consensus 26 ~~g~~~v~f~~ 36 (80)
.+||+|+.-.+
T Consensus 12 ~kGfGFI~~~~ 22 (73)
T 3a0j_A 12 EKGYGFIEREG 22 (73)
T ss_dssp TTTEEEEECTT
T ss_pred CCCEEEEecCC
Confidence 36899997654
No 240
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=20.04 E-value=40 Score=15.61 Aligned_cols=11 Identities=27% Similarity=0.609 Sum_probs=8.1
Q ss_pred eeeEEEEEECC
Q 035722 26 SKGYGSVTFST 36 (80)
Q Consensus 26 ~~g~~~v~f~~ 36 (80)
.+||+|++-.+
T Consensus 19 ~kGfGFI~~~~ 29 (79)
T 1h95_A 19 RNGYGFINRND 29 (79)
T ss_dssp TTTEEEEEEGG
T ss_pred CCCcEEEecCC
Confidence 36899997643
Done!