BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035723
(528 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1V6Y|A Chain A, Crystal Structure Of Chimeric Xylanase Between
Streptomyces Olivaceoviridis E-86 Fxyn And Cellulomonas
Fimi Cex
Length = 324
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 129/265 (48%), Gaps = 18/265 (6%)
Query: 189 FGSAIASTILGNLPYQKWFVERFNAAVFENELKWYATEPEQGKINYTIADQMMEFVRSNQ 248
FG+AIAS LG+ Y FN ENE+K ATEP++G+ N++ D++ + N
Sbjct: 16 FGTAIASGKLGDSAYTTIASREFNMVTAENEMKIDATEPQRGQFNFSAGDRVYNWAVQNG 75
Query: 249 LIARGHNIFWEDPKYTPAWVRNLTGPALQSAVNSRIQSLMNKYKEEFIHWDVSNEML--- 305
RGH + W + P W+++L+G L+ A+ I +M YK + WDV NE
Sbjct: 76 KQVRGHTLAWHSQQ--PGWMQSLSGSTLRQAMIDHINGVMGHYKGKIAQWDVVNEAFSDD 133
Query: 306 ----HFDFYEQRLGHDATLHFYETAHQSDPLATLFMNEFNVVETCSDENSTVDRYISRLR 361
D QR G+D + TA +DP A L N++N+ + V + +R
Sbjct: 134 GSGGRRDSNLQRTGNDWIEVAFRTARAADPAAKLCYNDYNIENWTWAKTQGV---YNMVR 190
Query: 362 ELKRGGVLMDGIGLESHFTVPNLPL-MRAILDKLATLNLPIWLTEVDISGKLDKE----- 415
+ K+ GV +D +G +SH V +P R L + A L + + +TE+DI + +
Sbjct: 191 DFKQRGVPIDCVGFQSHLIVGQVPGDFRQNLQRFADLGVDVRITELDIRMRTPSDATKLA 250
Query: 416 TQAVYLEQVLREGFSHPSVNGIMLW 440
TQA ++V++ G+ +W
Sbjct: 251 TQAADYKKVVQACMQVTRCQGVTVW 275
>pdb|1XYF|A Chain A, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis
pdb|1XYF|B Chain B, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis
pdb|1ISV|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylose
pdb|1ISV|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylose
pdb|1ISW|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylobiose
pdb|1ISW|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylobiose
pdb|1ISX|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylotriose
pdb|1ISX|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylotriose
pdb|1ISY|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Glucose
pdb|1ISY|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Glucose
pdb|1ISZ|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Galactose
pdb|1ISZ|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Galactose
pdb|1IT0|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Lactose
pdb|1IT0|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Lactose
pdb|1V6U|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 2(2)-Alpha-L-
Arabinofuranosyl-Xylobiose
pdb|1V6U|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 2(2)-Alpha-L-
Arabinofuranosyl-Xylobiose
pdb|1V6V|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 3(2)-Alpha-L-
Arabinofuranosyl-Xylotriose
pdb|1V6V|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 3(2)-Alpha-L-
Arabinofuranosyl-Xylotriose
pdb|1V6W|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
2(2)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylobiose
pdb|1V6W|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
2(2)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylobiose
pdb|1V6X|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
3(3)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylotriose
pdb|1V6X|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
3(3)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylotriose
Length = 436
Score = 125 bits (314), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 117/243 (48%), Gaps = 20/243 (8%)
Query: 189 FGSAIASTILGNLPYQKWFVERFNAAVFENELKWYATEPEQGKINYTIADQMMEFVRSNQ 248
FG+AIAS LG+ Y FN ENE+K ATEP++G+ N++ D++ + N
Sbjct: 16 FGTAIASGKLGDSAYTTIASREFNMVTAENEMKIDATEPQRGQFNFSAGDRVYNWAVQNG 75
Query: 249 LIARGHNIFWEDPKYTPAWVRNLTGPALQSAVNSRIQSLMNKYKEEFIHWDVSNEMLHFD 308
RGH + W + P W+++L+G L+ A+ I +M YK + WDV NE D
Sbjct: 76 KQVRGHTLAWHSQQ--PGWMQSLSGSTLRQAMIDHINGVMGHYKGKIAQWDVVNEAFSDD 133
Query: 309 FYE-------QRLGHDATLHFYETAHQSDPLATLFMNEFNVVETCSDENST---VDRYIS 358
QR G+D + TA +DP A L N++N+ EN T +
Sbjct: 134 GSGGRRDSNLQRTGNDWIEVAFRTARAADPAAKLCYNDYNI------ENWTWAKTQGVYN 187
Query: 359 RLRELKRGGVLMDGIGLESHFT--VPNLPLMRAILDKLATLNLPIWLTEVDISGKLDKET 416
+R+ K+ GV +D +G +SHF P R L A L + + +TE+DI G
Sbjct: 188 MVRDFKQRGVPIDCVGFQSHFNSGSPYNSNFRTTLQNFAALGVDVAITELDIQGASSSTY 247
Query: 417 QAV 419
AV
Sbjct: 248 AAV 250
>pdb|2G3I|A Chain A, Structure Of S.Olivaceoviridis Xylanase Q88aR275A MUTANT
pdb|2G3J|A Chain A, Structure Of S.Olivaceoviridis Xylanase Q88aR275A MUTANT
pdb|2G4F|A Chain A, Structure Of S.Olivaceoviridis Xylanase Q88aR275A MUTANT
pdb|2G4F|B Chain B, Structure Of S.Olivaceoviridis Xylanase Q88aR275A MUTANT
Length = 313
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 118/243 (48%), Gaps = 20/243 (8%)
Query: 189 FGSAIASTILGNLPYQKWFVERFNAAVFENELKWYATEPEQGKINYTIADQMMEFVRSNQ 248
FG+AIAS LG+ Y FN ENE+K ATEP++G+ N++ D++ + N
Sbjct: 16 FGTAIASGKLGDSAYTTIASREFNMVTAENEMKIDATEPQRGQFNFSAGDRVYNWAVQNG 75
Query: 249 LIARGHNIFWEDPKYTPAWVRNLTGPALQSAVNSRIQSLMNKYKEEFIHWDVSNEMLHFD 308
RGH + W + P W+++L+G L+ A+ I +M YK + WDV NE D
Sbjct: 76 KQVRGHTLAWHSAQ--PGWMQSLSGSTLRQAMIDHINGVMGHYKGKIAQWDVVNEAFSDD 133
Query: 309 FYE-------QRLGHDATLHFYETAHQSDPLATLFMNEFNVVETCSDENSTVDR---YIS 358
QR G+D + TA +DP A L N++N+ EN T + +
Sbjct: 134 GSGGRRDSNLQRTGNDWIEVAFRTARAADPAAKLCYNDYNI------ENWTWAKTQGVYN 187
Query: 359 RLRELKRGGVLMDGIGLESHFT--VPNLPLMRAILDKLATLNLPIWLTEVDISGKLDKET 416
+R+ K+ GV +D +G +SHF P R L A L + + +TE+DI G
Sbjct: 188 MVRDFKQRGVPIDCVGFQSHFNSGSPYNSNFRTTLQNFAALGVDVAITELDIQGASSSTY 247
Query: 417 QAV 419
AV
Sbjct: 248 AAV 250
>pdb|1E0V|A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme
Intermediate At 1.7 A
Length = 313
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 117/234 (50%), Gaps = 20/234 (8%)
Query: 189 FGSAIASTILGNLPYQKWFVERFNAAVFENELKWYATEPEQGKINYTIADQMMEFVRSNQ 248
FG+AIAS L + Y FN ENE+K ATEP++G+ N++ AD++ + N
Sbjct: 16 FGTAIASGRLSDSTYTSIAGREFNMVTAENEMKIDATEPQRGQFNFSSADRVYNWAVQNG 75
Query: 249 LIARGHNIFWEDPKYTPAWVRNLTGPALQSAVNSRIQSLMNKYKEEFIHWDVSNEML--- 305
RGH + W + P W+++L+G AL+ A+ I +M YK + + WDV NE
Sbjct: 76 KQVRGHTLAWHSQQ--PGWMQSLSGSALRQAMIDHINGVMAHYKGKIVQWDVVNEAFADG 133
Query: 306 ----HFDFYEQRLGHDATLHFYETAHQSDPLATLFMNEFNVVETCSDENST---VDRYIS 358
D QR G+D + TA +DP A L N++NV EN T +
Sbjct: 134 SSGARRDSNLQRSGNDWIEVAFRTARAADPSAKLCYNDYNV------ENWTWAKTQAMYN 187
Query: 359 RLRELKRGGVLMDGIGLESHFT--VPNLPLMRAILDKLATLNLPIWLTEVDISG 410
+R+ K+ GV +D +G +SHF P R L A L + + +TE+DI G
Sbjct: 188 MVRDFKQRGVPIDCVGFQSHFNSGSPYNSNFRTTLQNFAALGVDVAITELDIQG 241
>pdb|1E0W|A Chain A, Xylanase 10a From Sreptomyces Lividans. Native Structure
At 1.2 Angstrom Resolution
pdb|1E0X|A Chain A, Xylanase 10a From Sreptomyces Lividans. Xylobiosyl-Enzyme
Intermediate At 1.65 A
pdb|1E0X|B Chain B, Xylanase 10a From Sreptomyces Lividans. Xylobiosyl-Enzyme
Intermediate At 1.65 A
pdb|1OD8|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-Isofagomine Lactam
pdb|1V0K|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-Deoxynojirimycin At Ph 5.8
pdb|1V0L|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-isofagomine At Ph 5.8
pdb|1V0M|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-deoxynojirimycin At Ph 7.5
pdb|1V0N|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-Isofagomine At Ph 7.5
Length = 313
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 117/234 (50%), Gaps = 20/234 (8%)
Query: 189 FGSAIASTILGNLPYQKWFVERFNAAVFENELKWYATEPEQGKINYTIADQMMEFVRSNQ 248
FG+AIAS L + Y FN ENE+K ATEP++G+ N++ AD++ + N
Sbjct: 16 FGTAIASGRLSDSTYTSIAGREFNMVTAENEMKIDATEPQRGQFNFSSADRVYNWAVQNG 75
Query: 249 LIARGHNIFWEDPKYTPAWVRNLTGPALQSAVNSRIQSLMNKYKEEFIHWDVSNEML--- 305
RGH + W + P W+++L+G AL+ A+ I +M YK + + WDV NE
Sbjct: 76 KQVRGHTLAWHSQQ--PGWMQSLSGSALRQAMIDHINGVMAHYKGKIVQWDVVNEAFADG 133
Query: 306 ----HFDFYEQRLGHDATLHFYETAHQSDPLATLFMNEFNVVETCSDENST---VDRYIS 358
D QR G+D + TA +DP A L N++NV EN T +
Sbjct: 134 SSGARRDSNLQRSGNDWIEVAFRTARAADPSAKLCYNDYNV------ENWTWAKTQAMYN 187
Query: 359 RLRELKRGGVLMDGIGLESHFT--VPNLPLMRAILDKLATLNLPIWLTEVDISG 410
+R+ K+ GV +D +G +SHF P R L A L + + +TE+DI G
Sbjct: 188 MVRDFKQRGVPIDCVGFQSHFNSGSPYNSNFRTTLQNFAALGVDVAITELDIQG 241
>pdb|2D1Z|A Chain A, Crystal Structure Of Catalytic-Site Mutant Xylanase From
Streptomyces Olivaceoviridis E-86
pdb|2D1Z|B Chain B, Crystal Structure Of Catalytic-Site Mutant Xylanase From
Streptomyces Olivaceoviridis E-86
pdb|2D20|A Chain A, Crystal Structure Of Michaelis Complex Of Catalytic-Site
Mutant Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D20|B Chain B, Crystal Structure Of Michaelis Complex Of Catalytic-Site
Mutant Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D22|A Chain A, Crystal Structure Of Covalent Glycosyl-Enzyme Intermediate
Of Catalytic-Site Mutant Xylanase From Streptomyces
Olivaceoviridis E-86
pdb|2D22|B Chain B, Crystal Structure Of Covalent Glycosyl-Enzyme Intermediate
Of Catalytic-Site Mutant Xylanase From Streptomyces
Olivaceoviridis E-86
pdb|2D23|A Chain A, Crystal Structure Of Ep Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D23|B Chain B, Crystal Structure Of Ep Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D24|A Chain A, Crystal Structure Of Es Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D24|B Chain B, Crystal Structure Of Es Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
Length = 436
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 116/243 (47%), Gaps = 20/243 (8%)
Query: 189 FGSAIASTILGNLPYQKWFVERFNAAVFENELKWYATEPEQGKINYTIADQMMEFVRSNQ 248
FG+AIAS LG+ Y FN ENE+K ATEP++G+ N++ D++ + N
Sbjct: 16 FGTAIASGKLGDSAYTTIASREFNMVTAENEMKIDATEPQRGQFNFSAGDRVYNWAVQNG 75
Query: 249 LIARGHNIFWEDPKYTPAWVRNLTGPALQSAVNSRIQSLMNKYKEEFIHWDVSNEMLHFD 308
RGH + W + P W+++L+G L+ A+ I +M YK + WDV + D
Sbjct: 76 KQVRGHTLAWHSQQ--PGWMQSLSGSTLRQAMIDHINGVMGHYKGKIAQWDVVSHAFSDD 133
Query: 309 FYE-------QRLGHDATLHFYETAHQSDPLATLFMNEFNVVETCSDENST---VDRYIS 358
QR G+D + TA +DP A L N++N+ EN T +
Sbjct: 134 GSGGRRDSNLQRTGNDWIEVAFRTARAADPAAKLCYNDYNI------ENWTWAKTQGVYN 187
Query: 359 RLRELKRGGVLMDGIGLESHFT--VPNLPLMRAILDKLATLNLPIWLTEVDISGKLDKET 416
+R+ K+ GV +D +G +SHF P R L A L + + +TE+DI G
Sbjct: 188 MVRDFKQRGVPIDCVGFQSHFNSGSPYNSNFRTTLQNFAALGVDVAITELDIQGASSSTY 247
Query: 417 QAV 419
AV
Sbjct: 248 AAV 250
>pdb|1XAS|A Chain A, Crystal Structure, At 2.6 Angstroms Resolution, Of The
Streptomyces Lividans Xylanase A, A Member Of The F
Family Of Beta-1,4-D-Glycanses
Length = 299
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 116/234 (49%), Gaps = 20/234 (8%)
Query: 189 FGSAIASTILGNLPYQKWFVERFNAAVFENELKWYATEPEQGKINYTIADQMMEFVRSNQ 248
FG+AIAS L + Y FN ENE+K ATEP++G+ N++ AD++ + N
Sbjct: 16 FGTAIASGRLSDSTYTSIAGREFNMVTAENEMKIDATEPQRGQFNFSSADRVYNWAVQNG 75
Query: 249 LIARGHNIFWEDPKYTPAWVRNLTGPALQSAVNSRIQSLMNKYKEEFIHWDVSNEML--- 305
RGH + W + P W+++L+G L+ A+ I +M YK + + WDV NE
Sbjct: 76 KQVRGHTLAWHSQQ--PGWMQSLSGRPLRQAMIDHINGVMAHYKGKIVQWDVVNEAFADG 133
Query: 306 ----HFDFYEQRLGHDATLHFYETAHQSDPLATLFMNEFNVVETCSDENST---VDRYIS 358
D QR G+D + TA +DP A L N++NV EN T +
Sbjct: 134 SSGARRDSNLQRSGNDWIEVAFRTARAADPSAKLCYNDYNV------ENWTWAKTQAMYN 187
Query: 359 RLRELKRGGVLMDGIGLESHFT--VPNLPLMRAILDKLATLNLPIWLTEVDISG 410
+R+ K+ GV +D +G +SHF P R L A L + + +TE+DI G
Sbjct: 188 MVRDFKQRGVPIDCVGFQSHFNSGSPYNSNFRTTLQNFAALGVDVAITELDIQG 241
>pdb|1TUX|A Chain A, High Resolution Crystal Structure Of A Thermostable
Xylanase From Thermoascus Aurantiacus
Length = 301
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 130/272 (47%), Gaps = 21/272 (7%)
Query: 211 FNAAVFENELKWYATEPEQGKINYTIADQMMEFVRSNQLIARGHNIFWEDPKYTPAWVRN 270
F EN +KW ATEP QG N+ AD ++ + + N + RGH + W P+WV +
Sbjct: 40 FGQVTPENSMKWDATEPSQGNFNFAGADYLVNWAQQNGKLIRGHTLVWH--SQLPSWVVS 97
Query: 271 LTGP-ALQSAVNSRIQSLMNKYKEEFIHWDVSNEMLHFD------FYEQRLGHDATLHFY 323
+T L + + + I ++M +Y + WDV NE + D + +G D +
Sbjct: 98 ITDKNTLTNVMKNHITTIMTRYIGKIRAWDVVNEAFNEDGSLRQTVFNNVIGEDYIPIAF 157
Query: 324 ETAHQSDPLATLFMNEFNVVETCSDENSTVDRYISRLRELKRGGVLMDGIGLESHFTVPN 383
TA +DP A L++N++N+ + S + + R+++ + GV +DGIG ++H +
Sbjct: 158 RTARAADPNAKLYINDYNLDSASKPKTSAI---VKRVKKWRAAGVPIDGIGSQTHLSAGQ 214
Query: 384 LPLMRAILDKLATLNLP-IWLTEVDISGKLDKETQAVYLEQVLREGFSHPSVNGIMLWTA 442
+ A L LA+ P + +TE+DI+G T Y++ V+ S GI +W
Sbjct: 215 GASIDAALPNLASAGTPEVAITELDIAG----ATSTDYVD-VVNACLDVDSCIGITVWGV 269
Query: 443 LHPN---GCYQMCLTDNNLQNLPAGNIVDKLL 471
P+ L D N PA N + +LL
Sbjct: 270 ADPDSWRASTTPLLFDGNFNPKPAYNAIVQLL 301
>pdb|1NQ6|A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A
From Streptomyces Halstedii Jm8
Length = 302
Score = 116 bits (290), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 123/263 (46%), Gaps = 20/263 (7%)
Query: 189 FGSAIASTILGNLPYQKWFVERFNAAVFENELKWYATEPEQGKINYTIADQMMEFVRSNQ 248
FG+A+A+ LG Y +F + ENE+KW A E + +++ AD+++ +S
Sbjct: 15 FGAAVAANHLGEAAYASTLDAQFGSVTPENEMKWDAVESSRNSFSFSAADRIVSHAQSKG 74
Query: 249 LIARGHNIFWEDPKYTPAWVRNLTGPALQSAVNSRIQSLMNKYKEEFIHWDVSNEMLH-- 306
+ RGH + W P WV L L+SA+N+ I +M YK + WDV NE
Sbjct: 75 MKVRGHTLVWH--SQLPGWVSPLAATDLRSAMNNHITQVMTHYKGKIHSWDVVNEAFQDG 132
Query: 307 ------FDFYEQRLGHDATLHFYETAHQSDPLATLFMNEFNVVETCSDENSTVDRYISRL 360
++ +LG+ + TA D A L N++N +N+ + +
Sbjct: 133 GSGARRSSPFQDKLGNGFIEEAFRTARTVDADAKLCYNDYNT----DGQNAKSNAVYEMV 188
Query: 361 RELKRGGVLMDGIGLESHFTVPNLPL---MRAILDKLATLNLPIWLTEVDISGKLDKETQ 417
++ K+ GV +D +G +SHF N P+ +A L + A L + + +TE+DI G Q
Sbjct: 189 KDFKQRGVPIDCVGFQSHFN-SNSPVPSDFQANLQRFADLGVDVQITELDIEGS--GSAQ 245
Query: 418 AVYLEQVLREGFSHPSVNGIMLW 440
A +V+ + GI +W
Sbjct: 246 AANYTKVVNACLAVTRCTGITVW 268
>pdb|1I1W|A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable
Xylanase From Thermoascus Aurantiacus
pdb|1I1X|A Chain A, 1.11 A Atomic Resolution Structure Of A Thermostable
Xylanase From Thermoascus Aurantiacus
Length = 303
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 132/274 (48%), Gaps = 21/274 (7%)
Query: 211 FNAAVFENELKWYATEPEQGKINYTIADQMMEFVRSNQLIARGHNIFWEDPKYTPAWVRN 270
F EN +KW ATEP QG N+ AD ++ + + N + RGH + W P+WV +
Sbjct: 40 FGQVTPENSMKWDATEPSQGNFNFAGADYLVNWAQQNGKLIRGHTLVWH--SQLPSWVSS 97
Query: 271 LTGP-ALQSAVNSRIQSLMNKYKEEFIHWDVSNEMLHFD------FYEQRLGHDATLHFY 323
+T L + + + I +LM +YK + WDV NE + D + +G D +
Sbjct: 98 ITDKNTLTNVMKNHITTLMTRYKGKIRAWDVVNEAFNEDGSLRQTVFLNVIGEDYIPIAF 157
Query: 324 ETAHQSDPLATLFMNEFNVVETCSDENSTVDRYISRLRELKRGGVLMDGIGLESHFTVPN 383
+TA +DP A L++N++N+ + + ++R+++ + GV +DGIG ++H +
Sbjct: 158 QTARAADPNAKLYINDYNLDSASYPKTQAI---VNRVKKWRAAGVPIDGIGSQTHLSAGQ 214
Query: 384 LPLMRAILDKLATLNLP-IWLTEVDISGKLDKETQAVYLEQVLREGFSHPSVNGIMLWTA 442
+ L LA+ P + +TE+D++G + Y+ V+ + S GI +W
Sbjct: 215 GASVLQALPLLASAGTPEVAITELDVAGASSTD----YVN-VVNACLNVSSCVGITVWGV 269
Query: 443 LHPN---GCYQMCLTDNNLQNLPAGNIVDKLLKE 473
P+ L D N PA N + + L++
Sbjct: 270 ADPDSWRASTTPLLFDGNFNPKPAYNAIVQNLQQ 303
>pdb|1GOK|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus-
Crystal Form Ii
pdb|1GOO|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus -
Cryocooled Glycerol Complex
pdb|1GOM|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus -
Crystal Form I
pdb|1GOR|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus-
Xylobiose Complex At 100 K
pdb|1GOQ|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus-Room
Temperature Xylobiose Complex
Length = 303
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 132/274 (48%), Gaps = 21/274 (7%)
Query: 211 FNAAVFENELKWYATEPEQGKINYTIADQMMEFVRSNQLIARGHNIFWEDPKYTPAWVRN 270
F EN +KW ATEP QG N+ AD ++ + + N + RGH + W P+WV +
Sbjct: 40 FGQVTPENSMKWDATEPSQGNFNFAGADYLVNWAQQNGKLIRGHTLVWH--SQLPSWVSS 97
Query: 271 LTGP-ALQSAVNSRIQSLMNKYKEEFIHWDVSNEMLHFD------FYEQRLGHDATLHFY 323
+T L + + + I +LM +YK + WDV NE + D + +G D +
Sbjct: 98 ITDKNTLTNVMKNHITTLMTRYKGKIRAWDVVNEAFNEDGSLRQTVFLNVIGEDYIPIAF 157
Query: 324 ETAHQSDPLATLFMNEFNVVETCSDENSTVDRYISRLRELKRGGVLMDGIGLESHFTVPN 383
+TA +DP A L++N++N+ + + ++R+++ + GV +DGIG ++H +
Sbjct: 158 QTARAADPNAKLYINDYNLDSASYPKTQAI---VNRVKQWRAAGVPIDGIGSQTHLSAGQ 214
Query: 384 LPLMRAILDKLATLNLP-IWLTEVDISGKLDKETQAVYLEQVLREGFSHPSVNGIMLWTA 442
+ L LA+ P + +TE+D++G + Y+ V+ + S GI +W
Sbjct: 215 GAGVLQALPLLASAGTPEVAITELDVAGASPTD----YVN-VVNACLNVQSCVGITVWGV 269
Query: 443 LHPN---GCYQMCLTDNNLQNLPAGNIVDKLLKE 473
P+ L D N PA N + + L++
Sbjct: 270 ADPDSWRASTTPLLFDGNFNPKPAYNAIVQDLQQ 303
>pdb|1K6A|A Chain A, Structural Studies On The Mobility In The Active Site Of
The Thermoascus Aurantiacus Xylanase I
Length = 303
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 132/274 (48%), Gaps = 21/274 (7%)
Query: 211 FNAAVFENELKWYATEPEQGKINYTIADQMMEFVRSNQLIARGHNIFWEDPKYTPAWVRN 270
F EN +KW ATEP QG N+ AD ++ + + N + RGH + W P+WV +
Sbjct: 40 FGQVTPENSMKWDATEPSQGNFNFAGADYLVNWAQQNGKLIRGHTLVWH--SQLPSWVSS 97
Query: 271 LTGP-ALQSAVNSRIQSLMNKYKEEFIHWDVSNEMLHFD------FYEQRLGHDATLHFY 323
+T L + + + I +LM +YK + WDV NE + D + +G D +
Sbjct: 98 ITDKNTLTNVMKNHITTLMTRYKGKIRAWDVVNEAFNEDGSLRQTVFLNVIGEDYIPIAF 157
Query: 324 ETAHQSDPLATLFMNEFNVVETCSDENSTVDRYISRLRELKRGGVLMDGIGLESHFTVPN 383
+TA +DP A L++N++N+ + + ++R+++ + GV +DGIG ++H +
Sbjct: 158 QTARAADPNAKLYINDYNLDSASYPKTQAI---VNRVKQWRAAGVPIDGIGSQTHLSAGQ 214
Query: 384 LPLMRAILDKLATLNLP-IWLTEVDISGKLDKETQAVYLEQVLREGFSHPSVNGIMLWTA 442
+ L LA+ P + +TE+D++G + Y+ V+ + S GI +W
Sbjct: 215 GAGVLQALPLLASAGTPEVAITELDVAGASPTD----YVN-VVNACLNVQSCVGITVWGV 269
Query: 443 LHPN---GCYQMCLTDNNLQNLPAGNIVDKLLKE 473
P+ L D N PA N + + L++
Sbjct: 270 ADPDSWRASTTPLLFDGNFNPKPAYNAIVQDLQQ 303
>pdb|3CUF|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Cellobiose-Like Isofagomine
pdb|3CUG|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Cellotetraose-Like Isofagomine
pdb|3CUH|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Cellotriose-Like Isofagomine
pdb|3CUI|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Sulfur Substituted Beta-1,4 Xylotetraose
pdb|3CUJ|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Sulfur Substituted Beta-1,4 Xylopentaose
Length = 315
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 120/265 (45%), Gaps = 19/265 (7%)
Query: 189 FGSAIASTILGNLPYQKWFVERFNAAVFENELKWYATEPEQGKINYTIADQMMEFVRSNQ 248
FG A+ L Y+ FN V EN +KW ATEP Q ++ D++ +
Sbjct: 15 FGFALDPNRLSEAQYKAIADSEFNLVVAENAMKWDATEPSQNSFSFGAGDRVASYAADTG 74
Query: 249 LIARGHNIFWEDPKYTPAWVRNLTGPALQSAVNSRIQSLMNKYKEEFIHWDVSNEML--- 305
GH + W P W +NL G A +SA+ + + + + ++ + WDV NE
Sbjct: 75 KELYGHTLVWH--SQLPDWAKNLNGSAFESAMVNHVTKVADHFEGKVASWDVVNEAFADG 132
Query: 306 ----HFDFYEQRLGHDATLHFYETAHQSDPLATLFMNEFNVVETCSDENSTVDRYISRLR 361
++Q+LG+ + A +DP A L +N++NV + NS D ++
Sbjct: 133 GGRRQDSAFQQKLGNGYIETAFRAARAADPTAKLCINDYNVEGINAKSNSLYD----LVK 188
Query: 362 ELKRGGVLMDGIGLESHFTVPNLPL-MRAILDKLATLNLPIWLTEVDISGKLDKE----- 415
+ K GV +D +G +SH V +P R L + A L + + +TE+DI + +
Sbjct: 189 DFKARGVPLDCVGFQSHLIVGQVPGDFRQNLQRFADLGVDVRITELDIRMRTPSDATKLA 248
Query: 416 TQAVYLEQVLREGFSHPSVNGIMLW 440
TQA ++V++ G+ +W
Sbjct: 249 TQAADYKKVVQACMQVTRCQGVTVW 273
>pdb|2BNJ|A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes
Arabinose Decorations Of Xylan As Significant Substrate
Specificity Determinants
Length = 303
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 132/274 (48%), Gaps = 21/274 (7%)
Query: 211 FNAAVFENELKWYATEPEQGKINYTIADQMMEFVRSNQLIARGHNIFWEDPKYTPAWVRN 270
F EN +KW ATEP QG N+ AD ++ + + N + RGH + W P+WV +
Sbjct: 40 FGQVTPENSMKWDATEPSQGNFNFAGADYLVNWAQQNGKLIRGHTLVWH--SQLPSWVSS 97
Query: 271 LTGP-ALQSAVNSRIQSLMNKYKEEFIHWDVSNEMLHFD------FYEQRLGHDATLHFY 323
+T L + + + I +LM +YK + WDV NE + D + +G D +
Sbjct: 98 ITDKNTLTNVMKNHITTLMTRYKGKIRAWDVVNEAFNEDGSLRQTVFLNVIGEDYIPIAF 157
Query: 324 ETAHQSDPLATLFMNEFNVVETCSDENSTVDRYISRLRELKRGGVLMDGIGLESHFTVPN 383
+TA +DP A L++N++N+ + + ++R+++ + GV +DGIG ++H +
Sbjct: 158 QTARAADPNAKLYINDYNLDSASYPKTQAI---VNRVKKWRAAGVPIDGIGSQTHLSAGQ 214
Query: 384 LPLMRAILDKLATLNLP-IWLTEVDISGKLDKETQAVYLEQVLREGFSHPSVNGIMLWTA 442
+ L LA+ P + +TE+D++G + Y+ V+ + S GI +W
Sbjct: 215 GAGVLQALPLLASAGTPEVAITELDVAGASPTD----YVN-VVNACLNVSSCVGITVWGV 269
Query: 443 LHPN---GCYQMCLTDNNLQNLPAGNIVDKLLKE 473
P+ L D N PA N + + L++
Sbjct: 270 ADPDSWRASTTPLLFDGNFNPKPAYNAIVQNLQQ 303
>pdb|1FH7|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Inhibitor Deoxynojirimycin
pdb|1FH8|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Isofagomine Inhibitor
pdb|1FH9|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Lactam Oxime Inhibitor
pdb|1FHD|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Imidazole Inhibitor
pdb|1J01|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Inhibitor Isofagomine Lactam
pdb|1EXP|A Chain A, Beta-1,4-Glycanase Cex-Cd
pdb|2EXO|A Chain A, Crystal Structure Of The Catalytic Domain Of The Beta-1,4-
Glycanase Cex From Cellulomonas Fimi
pdb|2XYL|A Chain A, Cellulomonas Fimi XylanaseCELLULASE COMPLEXED WITH
2-Deoxy- 2-Fluoro-Xylobiose
Length = 312
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 120/265 (45%), Gaps = 19/265 (7%)
Query: 189 FGSAIASTILGNLPYQKWFVERFNAAVFENELKWYATEPEQGKINYTIADQMMEFVRSNQ 248
FG A+ L Y+ FN V EN +KW ATEP Q ++ D++ +
Sbjct: 15 FGFALDPNRLSEAQYKAIADSEFNLVVAENAMKWDATEPSQNSFSFGAGDRVASYAADTG 74
Query: 249 LIARGHNIFWEDPKYTPAWVRNLTGPALQSAVNSRIQSLMNKYKEEFIHWDVSNEML--- 305
GH + W P W +NL G A +SA+ + + + + ++ + WDV NE
Sbjct: 75 KELYGHTLVWH--SQLPDWAKNLNGSAFESAMVNHVTKVADHFEGKVASWDVVNEAFADG 132
Query: 306 ----HFDFYEQRLGHDATLHFYETAHQSDPLATLFMNEFNVVETCSDENSTVDRYISRLR 361
++Q+LG+ + A +DP A L +N++NV + NS D ++
Sbjct: 133 GGRRQDSAFQQKLGNGYIETAFRAARAADPTAKLCINDYNVEGINAKSNSLYD----LVK 188
Query: 362 ELKRGGVLMDGIGLESHFTVPNLPL-MRAILDKLATLNLPIWLTEVDISGKLDKE----- 415
+ K GV +D +G +SH V +P R L + A L + + +TE+DI + +
Sbjct: 189 DFKARGVPLDCVGFQSHLIVGQVPGDFRQNLQRFADLGVDVRITELDIRMRTPSDATKLA 248
Query: 416 TQAVYLEQVLREGFSHPSVNGIMLW 440
TQA ++V++ G+ +W
Sbjct: 249 TQAADYKKVVQACMQVTRCQGVTVW 273
>pdb|1B30|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
1,2- (4-Deoxy-Beta-L-Threo-Hex-4-Enopyranosyluronic
Acid)-Beta- 1,4-Xylotriose)
pdb|1B31|A Chain A, Xylanase From Penicillium Simplicissimum, Native With
Peg200 As Cryoprotectant
pdb|1B3V|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylose
pdb|1B3W|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylobiose
pdb|1B3X|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylotriose
pdb|1B3Y|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylotetraose
pdb|1B3Z|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylopentaose
pdb|1BG4|A Chain A, Xylanase From Penicillium Simplicissimum
Length = 302
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 119/238 (50%), Gaps = 18/238 (7%)
Query: 217 ENELKWYATEPEQGKINYTIADQMMEFVRSNQLIARGHNIFWEDPKYTPAWVRNLTGP-A 275
EN +KW ATEP +G+ ++ +D ++ F +SN + RGH + W P WV ++T
Sbjct: 47 ENSMKWDATEPNRGQFTFSGSDYLVNFAQSNGKLIRGHTLVWHSQ--LPGWVSSITDKNT 104
Query: 276 LQSAVNSRIQSLMNKYKEEFIHWDVSNEMLHFD------FYEQRLGHDATLHFYETAHQS 329
L S + + I ++M +YK + WDV NE+ + D + +G D +ETA
Sbjct: 105 LISVLKNHITTVMTRYKGKIYAWDVLNEIFNEDGSLRNSVFYNVIGEDYVRIAFETARSV 164
Query: 330 DPLATLFMNEFNVVETCSDENSTVDRYISRLRELKRGGVLMDGIGLESHFTVPNLPLMRA 389
DP A L++N++N+ S S V+ +S +++ G+ +DGIG ++H +
Sbjct: 165 DPNAKLYINDYNL---DSAGYSKVNGMVSHVKKWLAAGIPIDGIGSQTHLGAGAGSAVAG 221
Query: 390 ILDKLATLNLP-IWLTEVDISGKLDKETQAVYLEQVLREGFSHPSVNGIMLWTALHPN 446
L+ LA+ I +TE+DI+G + Y+ V+ + GI +W P+
Sbjct: 222 ALNALASAGTKEIAITELDIAGASSTD----YV-NVVNACLNQAKCVGITVWGVADPD 274
>pdb|2HIS|A Chain A, Cellulomonas Fimi XylanaseCELLULASE DOUBLE MUTANT
E127aH205N WITH COVALENT CELLOBIOSE
Length = 312
Score = 105 bits (262), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 119/265 (44%), Gaps = 19/265 (7%)
Query: 189 FGSAIASTILGNLPYQKWFVERFNAAVFENELKWYATEPEQGKINYTIADQMMEFVRSNQ 248
FG A+ L Y+ FN V EN +KW ATEP Q ++ D++ +
Sbjct: 15 FGFALDPNRLSEAQYKAIADSEFNLVVAENAMKWDATEPSQNSFSFGAGDRVASYAADTG 74
Query: 249 LIARGHNIFWEDPKYTPAWVRNLTGPALQSAVNSRIQSLMNKYKEEFIHWDVSNEML--- 305
GH + W P W +NL G A +SA+ + + + + ++ + WDV N
Sbjct: 75 KELYGHTLVWH--SQLPDWAKNLNGSAFESAMVNHVTKVADHFEGKVASWDVVNAAFADG 132
Query: 306 ----HFDFYEQRLGHDATLHFYETAHQSDPLATLFMNEFNVVETCSDENSTVDRYISRLR 361
++Q+LG+ + A +DP A L +N++NV + NS D ++
Sbjct: 133 GGRRQDSAFQQKLGNGYIETAFRAARAADPTAKLCINDYNVEGINAKSNSLYD----LVK 188
Query: 362 ELKRGGVLMDGIGLESHFTVPNLPL-MRAILDKLATLNLPIWLTEVDISGKLDKE----- 415
+ K GV +D +G +S+ V +P R L + A L + + +TE+DI + +
Sbjct: 189 DFKARGVPLDCVGFQSNLIVGQVPGDFRQNLQRFADLGVDVRITELDIRMRTPSDATKLA 248
Query: 416 TQAVYLEQVLREGFSHPSVNGIMLW 440
TQA ++V++ G+ +W
Sbjct: 249 TQAADYKKVVQACMQVTRCQGVTVW 273
>pdb|1XYZ|A Chain A, A Common Protein Fold And Similar Active Site In Two
Distinct Families Of Beta-Glycanases
pdb|1XYZ|B Chain B, A Common Protein Fold And Similar Active Site In Two
Distinct Families Of Beta-Glycanases
Length = 347
Score = 105 bits (261), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 123/257 (47%), Gaps = 25/257 (9%)
Query: 203 YQKWFVERFNAAVFENELKWYATEPEQGKINYTIADQMMEFVRSNQLIARGHNIFWEDPK 262
Y F+ V ENE+K+ A +P Q +++ DQ++ F N + RGH + W +
Sbjct: 55 YNSILQREFSMVVCENEMKFDALQPRQNVFDFSKGDQLLAFAERNGMQMRGHTLIWHN-- 112
Query: 263 YTPAWVRN--LTGPALQSAVNSRIQSLMNKYKEEFIHWDVSNEM-------LHFDFYEQR 313
P+W+ N +L + + + I ++M YK + + WDV+NE L +
Sbjct: 113 QNPSWLTNGNWNRDSLLAVMKNHITTVMTHYKGKIVEWDVANECMDDSGNGLRSSIWRNV 172
Query: 314 LGHDATLHFYETAHQSDPLATLFMNEFNVVETCSDENSTVDRYISRLRELKRGGVLMDGI 373
+G D + + A ++DP A LF N++N+ + N+ + ++ +K GV +DG+
Sbjct: 173 IGQDYLDYAFRYAREADPDALLFYNDYNIEDLGPKSNAV----FNMIKSMKERGVPIDGV 228
Query: 374 GLESHFTVPNLPLMRAILD----KLATLNLPIWLTEVDISGKLDK------ETQAVYLEQ 423
G + HF P A +D + A + + + TE+DI + + QA ++
Sbjct: 229 GFQCHFINGMSPEYLASIDQNIKRYAEIGVIVSFTEIDIRIPQSENPATAFQVQANNYKE 288
Query: 424 VLREGFSHPSVNGIMLW 440
+++ ++P+ N ++W
Sbjct: 289 LMKICLANPNCNTFVMW 305
>pdb|1TA3|B Chain B, Crystal Structure Of Xylanase (Gh10) In Complex With
Inhibitor (Xip)
Length = 303
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 126/264 (47%), Gaps = 24/264 (9%)
Query: 189 FGSAIASTILGNLPYQKWFVERFNAAVFENELKWYATEPEQGKINYTIADQMMEFVRSNQ 248
FG+ +L N + +F EN +KW A EP QG ++ AD ++++ +
Sbjct: 17 FGTCSDQALLQNSQNEAIVASQFGVITPENSMKWDALEPSQGNFGWSGADYLVDYATQHN 76
Query: 249 LIARGHNIFWEDPKYTPAWVRNL-TGPALQSAVNSRIQSLMNKYKEEFIHWDVSNEMLHF 307
RGH + W P+WV ++ L+S + + I ++ +YK + +HWDV NE+ +
Sbjct: 77 KKVRGHTLVWHSQ--LPSWVSSIGDANTLRSVMTNHINEVVGRYKGKIMHWDVVNEIFNE 134
Query: 308 D-------FYEQRLGHDATLHFYETAHQSDPLATLFMNEFNVVETCSDENSTVDRYISR- 359
D FY LG D +ETA +DP A L++N++N+ + + Y+ +
Sbjct: 135 DGTFRNSVFY-NLLGEDFVRIAFETARAADPDAKLYINDYNLDSASYAKTQAMASYVKKW 193
Query: 360 LRELKRGGVLMDGIGLESHFTVPNLPLMRA--ILDKLATLNLP-IWLTEVDISGKLDKET 416
L E GV +DGIG ++H++ + A L LA + + +TE+DI+G +
Sbjct: 194 LAE----GVPIDGIGSQAHYSSSHWSSTEAAGALSSLANTGVSEVAITELDIAGAASSD- 248
Query: 417 QAVYLEQVLREGFSHPSVNGIMLW 440
YL +L + GI +W
Sbjct: 249 ---YL-NLLNACLNEQKCVGITVW 268
>pdb|2Q8X|A Chain A, The High-resolution Crystal Structure Of Ixt6, A
Thermophilic, Intracellular Xylanase From G.
Stearothermophilus
pdb|2Q8X|B Chain B, The High-resolution Crystal Structure Of Ixt6, A
Thermophilic, Intracellular Xylanase From G.
Stearothermophilus
pdb|3MSD|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MSD|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MSG|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MSG|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus
Length = 331
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 127/242 (52%), Gaps = 25/242 (10%)
Query: 184 SKDFPFGSAIASTILGNLPYQKWFVERFNAAVFENELKWYATEPEQGKINYTIADQMMEF 243
+ DF G+A+ + ++ ++ N+ EN +K+ +PE+GK + AD++++F
Sbjct: 13 ANDFRIGAAVNPVTIEM--QKQLLIDHVNSITAENHMKFEHLQPEEGKFTFQEADRIVDF 70
Query: 244 VRSNQLIARGHNIFWEDPKYTPAWVRN------LTGPALQSAVNSRIQSLMNKYKEEFIH 297
S+++ RGH + W + TP WV ++ L + I +++ +YK +
Sbjct: 71 ACSHRMAVRGHTLVWHNQ--TPDWVFQDGQGHFVSRDVLLERMKCHISTVVRRYKGKIYC 128
Query: 298 WDV--------SNEMLHFDFYEQRLGHDATLHFYETAHQSDPLATLFMNEFNVVETCSDE 349
WDV NE+L + Q +G D + A+++DP A LF N++N C E
Sbjct: 129 WDVINEAVADEGNELLRPSKWRQIIGDDFMEQAFLYAYEADPDALLFYNDYN---ECFPE 185
Query: 350 NSTVDRYISRLRELKRGGVLMDGIGLESHF--TVPNLPLMRAILDKLATLNLPIWLTEVD 407
++ + ++ L+ G+ + GIG+++H+ T P+L +RA +++ A+L + + +TE+D
Sbjct: 186 KR--EKIFALVKSLRDKGIPIHGIGMQAHWSLTRPSLDEIRAAIERYASLGVVLHITELD 243
Query: 408 IS 409
+S
Sbjct: 244 VS 245
>pdb|3O2L|A Chain A, Crystal Structure Of An Inactive Kemp Elimination Design
Hg-1
Length = 317
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 132/276 (47%), Gaps = 24/276 (8%)
Query: 218 NELKWYATEPEQGKINYTIADQMMEFVRSNQLIARGHNIFWEDPKYTPAWVRNLTGP-AL 276
N +KW ATEP QG N+ AD ++ + + N + RGH + Y P+WV ++T L
Sbjct: 48 NSMKWDATEPSQGNFNFAGADYLVNWAQQNGKLIRGHTLVGH--FYLPSWVSSITDKNTL 105
Query: 277 QSAVNSRIQSLMNKYKEEFIHWDVSNEMLHFD------FYEQRLGHDATLHFYETAHQSD 330
+ + + I +LM +YK + WDV NE + D + +G D ++TA +D
Sbjct: 106 TNVMKNHITTLMTRYKGKIRAWDVVNEAFNEDGSLRQTVFLNVIGEDYIPIAFQTARAAD 165
Query: 331 PLATLFMNEFNVVETCSDENSTVDRYISRLRELKRGGVLMDGIGLESHFTVPNLPLMRAI 390
P A L++N++N+ + + ++R+++ + GV +DGIG ++H + +
Sbjct: 166 PNAKLYINDYNLDSASYPKTQAI---VNRVKQWRAAGVPIDGIGSQTHLSAGQGAGVLQA 222
Query: 391 LDKLATLNLP-IWLTEVDISGKLDKETQAVYLEQVLREGFSHPSVNGIMLWTALHPN--- 446
L LA+ P + +TE++++G + Y+ V+ + S GI + P+
Sbjct: 223 LPLLASAGTPEVAITELNVAGASPTD----YVN-VVNACLNVQSCVGITVAGVADPDSWR 277
Query: 447 GCYQMCLTDNNLQNLPAGNIVDKLLKEWQTGEVTGH 482
L D N PA N ++++ Q G + G
Sbjct: 278 ASTTPLLFDGNFNPKPAYN---AIVQDLQQGSIEGR 310
>pdb|1N82|A Chain A, The High-Resolution Crystal Structure Of Ixt6, A
Thermophilic, Intracellular Xylanase From G.
Stearothermophilus
pdb|1N82|B Chain B, The High-Resolution Crystal Structure Of Ixt6, A
Thermophilic, Intracellular Xylanase From G.
Stearothermophilus
pdb|3MUA|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MUA|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus
Length = 331
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 127/242 (52%), Gaps = 25/242 (10%)
Query: 184 SKDFPFGSAIASTILGNLPYQKWFVERFNAAVFENELKWYATEPEQGKINYTIADQMMEF 243
+ DF G+A+ + ++ ++ N+ EN +K+ +PE+GK + AD++++F
Sbjct: 13 ANDFRIGAAVNPVTIEM--QKQLLIDHVNSITAENHMKFEHLQPEEGKFTFQEADRIVDF 70
Query: 244 VRSNQLIARGHNIFWEDPKYTPAWVRN------LTGPALQSAVNSRIQSLMNKYKEEFIH 297
S+++ RGH + W + TP WV ++ L + I +++ +YK +
Sbjct: 71 ACSHRMAVRGHTLVWHNQ--TPDWVFQDGQGHFVSRDVLLERMKCHISTVVRRYKGKIYC 128
Query: 298 WDVSN--------EMLHFDFYEQRLGHDATLHFYETAHQSDPLATLFMNEFNVVETCSDE 349
WDV N E+L + Q +G D + A+++DP A LF N++N C E
Sbjct: 129 WDVINEAVADEGDELLRPSKWRQIIGDDFMEQAFLYAYEADPDALLFYNDYN---ECFPE 185
Query: 350 NSTVDRYISRLRELKRGGVLMDGIGLESHF--TVPNLPLMRAILDKLATLNLPIWLTEVD 407
++ + ++ L+ G+ + GIG+++H+ T P+L +RA +++ A+L + + +TE+D
Sbjct: 186 KR--EKIFALVKSLRDKGIPIHGIGMQAHWSLTRPSLDEIRAAIERYASLGVVLHITELD 243
Query: 408 IS 409
+S
Sbjct: 244 VS 245
>pdb|1VBR|A Chain A, Crystal Structure Of Complex Xylanase 10b From Thermotoga
Maritima With Xylobiose
pdb|1VBR|B Chain B, Crystal Structure Of Complex Xylanase 10b From Thermotoga
Maritima With Xylobiose
pdb|1VBU|A Chain A, Crystal Structure Of Native Xylanase 10b From Thermotoga
Maritima
pdb|1VBU|B Chain B, Crystal Structure Of Native Xylanase 10b From Thermotoga
Maritima
Length = 328
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 115/246 (46%), Gaps = 22/246 (8%)
Query: 211 FNAAVFENELKWYATEPEQGKINYTIADQMMEFVRSNQLIARGHNIFWEDPKYTPAWV-- 268
FN EN++KW PE+ + N+T A++ +EF N +I GH + W + P W+
Sbjct: 42 FNILTPENQMKWDTIHPERDRYNFTPAEKHVEFAEENDMIVHGHTLVWHNQ--LPGWITG 99
Query: 269 RNLTGPALQSAVNSRIQSLMNKYKEEFIHWDVSNEML------HFDFYEQRLGHDATLHF 322
R T L + + I+++++ +K WDV NE + + + +G +
Sbjct: 100 REWTKEELLNVLEDHIKTVVSHFKGRVKIWDVVNEAVSDSGTYRESVWYKTIGPEYIEKA 159
Query: 323 YETAHQSDPLATLFMNEFNVVETCSDENSTVDRYISRLRELKRGGVLMDGIGLESHFTVP 382
+ A ++DP A L N++++ E + N + ++ELK GV +DGIG + H
Sbjct: 160 FRWAKEADPDAILIYNDYSIEEINAKSNFVYN----MIKELKEKGVPVDGIGFQMHIDYR 215
Query: 383 --NLPLMRAILDKLATLNLPIWLTEVDISGKLDK------ETQAVYLEQVLREGFSHPSV 434
N R L++ A L L I++TE+D+ L + QA ++ +P+V
Sbjct: 216 GLNYDSFRRNLERFAKLGLQIYITEMDVRIPLSGSEEYYLKKQAEVCAKIFDICLDNPAV 275
Query: 435 NGIMLW 440
I W
Sbjct: 276 KAIQFW 281
>pdb|3NIY|A Chain A, Crystal Structure Of Native Xylanase 10b From Thermotoga
Petrophila Rku-1
pdb|3NIY|B Chain B, Crystal Structure Of Native Xylanase 10b From Thermotoga
Petrophila Rku-1
pdb|3NJ3|A Chain A, Crystal Structure Of Xylanase 10b From Thermotoga
Petrophila Rku-1 In Complex With Xylobiose
pdb|3NJ3|B Chain B, Crystal Structure Of Xylanase 10b From Thermotoga
Petrophila Rku-1 In Complex With Xylobiose
Length = 341
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 117/246 (47%), Gaps = 22/246 (8%)
Query: 211 FNAAVFENELKWYATEPEQGKINYTIADQMMEFVRSNQLIARGHNIFWEDPKYTPAWV-- 268
FN EN++KW PE+ + N+T A++ +EF N +I GH + W + P W+
Sbjct: 58 FNILTPENQMKWDTIHPERDRYNFTPAEKHVEFAEENNMIVHGHTLVWHNQ--LPGWITG 115
Query: 269 RNLTGPALQSAVNSRIQSLMNKYKEEFIHWDVSNEML------HFDFYEQRLGHDATLHF 322
R T L + + I+++++ +K WDV NE + + + +G +
Sbjct: 116 REWTKEELLNVLEDHIKTVVSHFKGRVKIWDVVNEAVSDSGTYRESVWYKTIGPEYIEKA 175
Query: 323 YETAHQSDPLATLFMNEFNVVETCSDENSTVDRYISRLRELKRGGVLMDGIGLESH--FT 380
+ ++DP A L N++++ E + N + ++ELK GV +DGIG + H +
Sbjct: 176 FRWTKEADPDAILIYNDYSIEEINAKSNFVYN----MIKELKEKGVPVDGIGFQMHIDYR 231
Query: 381 VPNLPLMRAILDKLATLNLPIWLTEVDI----SGKLDK--ETQAVYLEQVLREGFSHPSV 434
N R L++ A L L I++TE+D+ SG D + QA ++ +P+V
Sbjct: 232 GLNYDSFRRNLERFAKLGLQIYITEMDVRIPLSGSEDYYLKKQAEICAKIFDICLDNPAV 291
Query: 435 NGIMLW 440
I W
Sbjct: 292 KAIQFW 297
>pdb|3MS8|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MS8|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus
Length = 331
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 126/242 (52%), Gaps = 25/242 (10%)
Query: 184 SKDFPFGSAIASTILGNLPYQKWFVERFNAAVFENELKWYATEPEQGKINYTIADQMMEF 243
+ DF G+A+ + ++ ++ N+ EN +K+ +PE+GK + AD++++F
Sbjct: 13 ANDFRIGAAVNPVTIEM--QKQLLIDHVNSITAENHMKFEHLQPEEGKFTFQEADRIVDF 70
Query: 244 VRSNQLIARGHNIFWEDPKYTPAWVRN------LTGPALQSAVNSRIQSLMNKYKEEFIH 297
S+++ RGH + W + TP WV ++ L + I +++ +YK +
Sbjct: 71 ACSHRMAVRGHTLVWHNQ--TPDWVFQDGQGHFVSRDVLLERMKCHISTVVRRYKGKIYC 128
Query: 298 WDV--------SNEMLHFDFYEQRLGHDATLHFYETAHQSDPLATLFMNEFNVVETCSDE 349
WDV NE+L + Q +G D + A+++DP A LF N++N C E
Sbjct: 129 WDVINEAVADEGNELLRPSKWRQIIGDDFMEQAFLYAYEADPDALLFYNDYN---ECFPE 185
Query: 350 NSTVDRYISRLRELKRGGVLMDGIGLESHF--TVPNLPLMRAILDKLATLNLPIWLTEVD 407
++ + ++ L+ G+ + GIG+++H+ T P+L +RA +++ A+L + + +T +D
Sbjct: 186 KR--EKIFALVKSLRDKGIPIHGIGMQAHWSLTRPSLDEIRAAIERYASLGVVLHITALD 243
Query: 408 IS 409
+S
Sbjct: 244 VS 245
>pdb|3MUI|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MUI|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus
Length = 331
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 126/242 (52%), Gaps = 25/242 (10%)
Query: 184 SKDFPFGSAIASTILGNLPYQKWFVERFNAAVFENELKWYATEPEQGKINYTIADQMMEF 243
+ DF G+A+ + ++ ++ N+ EN +K+ +PE+GK + AD++++F
Sbjct: 13 ANDFRIGAAVNPVTIEM--QKQLLIDHVNSITAENHMKFEHLQPEEGKFTFQEADRIVDF 70
Query: 244 VRSNQLIARGHNIFWEDPKYTPAWVRN------LTGPALQSAVNSRIQSLMNKYKEEFIH 297
S+++ RGH + W + TP WV ++ L + I +++ +YK +
Sbjct: 71 ACSHRMAVRGHTLVWHNQ--TPDWVFQDGQGHFVSRDVLLERMKCHISTVVRRYKGKIYC 128
Query: 298 WDVSN--------EMLHFDFYEQRLGHDATLHFYETAHQSDPLATLFMNEFNVVETCSDE 349
WDV N E+L + Q +G D + A+++DP A LF N++N C E
Sbjct: 129 WDVINEAVADEGDELLRPSKWRQIIGDDFMEQAFLYAYEADPDALLFYNDYN---ECFPE 185
Query: 350 NSTVDRYISRLRELKRGGVLMDGIGLESHF--TVPNLPLMRAILDKLATLNLPIWLTEVD 407
++ + ++ L+ G+ + GIG+++H+ T P+L +RA +++ A+L + + +T +D
Sbjct: 186 KR--EKIFALVKSLRDKGIPIHGIGMQAHWSLTRPSLDEIRAAIERYASLGVVLHITALD 243
Query: 408 IS 409
+S
Sbjct: 244 VS 245
>pdb|3EMC|A Chain A, Crystal Structure Of Xynb, An Intracellular Xylanase From
Paenibacillus Barcinonensis
pdb|3EMQ|A Chain A, Crystal Structure Of Xilanase Xynb From Paenibacillus
Barcelonensis Complexed With An Inhibitor
pdb|3EMZ|A Chain A, Crystal Structure Of Xylanase Xynb From Paenibacillus
Barcinonensis Complexed With A Conduramine Derivative
Length = 331
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 124/239 (51%), Gaps = 25/239 (10%)
Query: 187 FPFGSAIASTILGNLPYQKWFVERFNAAVFENELKWYATEPEQGKINYTIADQMMEFVRS 246
F G+A+ + +L ++ + +N+ EN++K+ P + + + AD++++F +
Sbjct: 15 FKIGAAVHTRMLQT--EGEFIAKHYNSVTAENQMKFEEVHPREHEYTFEAADEIVDFAVA 72
Query: 247 NQLIARGHNIFWEDPKYTPAWV-RNLTG-----PALQSAVNSRIQSLMNKYKEEFIHWDV 300
+ RGH + W + TPAW+ + +G + S + I +++ +YK++ WDV
Sbjct: 73 RGIGVRGHTLVWHNQ--TPAWMFEDASGGTASREMMLSRLKQHIDTVVGRYKDQIYAWDV 130
Query: 301 SNE--------MLHFDFYEQRLGHDATLHFYETAHQSDPLATLFMNEFNVVETCSDENST 352
NE ++ + + LG D + + AH++DP A LF N++N + E
Sbjct: 131 VNEAIEDKTDLIMRDTKWLRLLGEDYLVQAFNMAHEADPNALLFYNDYNETDPVKRE--- 187
Query: 353 VDRYISRLRELKRGGVLMDGIGLESHFTV--PNLPLMRAILDKLATLNLPIWLTEVDIS 409
+ + +R L G + GIG++ H+ + P++ +R +++ A+L++ + +TE+D+S
Sbjct: 188 --KIYNLVRSLLDQGAPVHGIGMQGHWNIHGPSMDEIRQAIERYASLDVQLHVTELDLS 244
>pdb|1US3|A Chain A, Native Xylanase10c From Cellvibrio Japonicus
Length = 530
Score = 91.7 bits (226), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 77/336 (22%), Positives = 145/336 (43%), Gaps = 62/336 (18%)
Query: 186 DFPFGSAIAST------ILGNLPYQKWFVERFNAAVFENELKWYATEPEQGKINYTIADQ 239
DFP G A+++T +L N Q + FN N +K +P +G N+T AD
Sbjct: 174 DFPIGVAVSNTDSATYNLLTNSREQAVVKKHFNHLTAGNIMKMSYMQPTEGNFNFTNADA 233
Query: 240 MMEFVRSNQLIARGHNIFWEDPKYTPAWVRNLTGPA--LQSAVNSRIQSLMNKY--KEEF 295
+++ N + GH + W P +++N G A +A+++ I ++++ Y K
Sbjct: 234 FVDWATENNMTVHGHALVWHSDYQVPNFMKNWAGSAEDFLAALDTHITTIVDHYEAKGNL 293
Query: 296 IHWDVSNEMLHFDFYEQRLGHDATLHF------------YETAHQSDPLATLFMNEFNVV 343
+ WDV NE + + D+ + ++TA +DP L+ N++N+
Sbjct: 294 VSWDVVNEAIDDNSPANFRTTDSAFYVKSGNSSVYIERAFQTARAADPAVILYYNDYNIE 353
Query: 344 ETCSDENSTVDRYISRLRELKRGGVLMDGIGLESHFTV--PNLPLMRAILDKLATLNLPI 401
+ N+ + + +++ + + +DG+G + H + P++ + A + K+ L L +
Sbjct: 354 Q----NNAKTTKMVDMVKDFQARSIPIDGVGFQMHVCMNYPSIANISAAMKKVVDLGLLV 409
Query: 402 WLTEVDI-----------SGKLDKETQAVYLEQ------VLREGFSHPSVN---GIMLWT 441
+TE+D+ + K++ T+A L Q V++ VN GI +W
Sbjct: 410 KITELDVAVNQPHCDAYPANKINPLTEAAQLAQKKRYCDVVKAYLDTVPVNQRGGISVWG 469
Query: 442 ALHPN----GCYQM----------CLTDNNLQNLPA 463
N G Y+ L DNN + PA
Sbjct: 470 TTDANTWLDGLYREQFEDEKISWPLLFDNNYNDKPA 505
>pdb|1US2|A Chain A, Xylanase10c (Mutant E385a) From Cellvibrio Japonicus In
Complex With Xylopentaose
Length = 530
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/336 (22%), Positives = 144/336 (42%), Gaps = 62/336 (18%)
Query: 186 DFPFGSAIAST------ILGNLPYQKWFVERFNAAVFENELKWYATEPEQGKINYTIADQ 239
DFP G A+++T +L N Q + FN N +K +P +G N+T AD
Sbjct: 174 DFPIGVAVSNTDSATYNLLTNSREQAVVKKHFNHLTAGNIMKMSYMQPTEGNFNFTNADA 233
Query: 240 MMEFVRSNQLIARGHNIFWEDPKYTPAWVRNLTGPA--LQSAVNSRIQSLMNKY--KEEF 295
+++ N + GH + W P +++N G A +A+++ I ++++ Y K
Sbjct: 234 FVDWATENNMTVHGHALVWHSDYQVPNFMKNWAGSAEDFLAALDTHITTIVDHYEAKGNL 293
Query: 296 IHWDVSNEMLHFDFYEQRLGHDATLHF------------YETAHQSDPLATLFMNEFNVV 343
+ WDV N + + D+ + ++TA +DP L+ N++N+
Sbjct: 294 VSWDVVNAAIDDNSPANFRTTDSAFYVKSGNSSVYIERAFQTARAADPAVILYYNDYNIE 353
Query: 344 ETCSDENSTVDRYISRLRELKRGGVLMDGIGLESHFTV--PNLPLMRAILDKLATLNLPI 401
+ N+ + + +++ + + +DG+G + H + P++ + A + K+ L L +
Sbjct: 354 Q----NNAKTTKMVDMVKDFQARSIPIDGVGFQMHVCMNYPSIANISAAMKKVVDLGLLV 409
Query: 402 WLTEVDI-----------SGKLDKETQAVYLEQ------VLREGFSHPSVN---GIMLWT 441
+TE+D+ + K++ T+A L Q V++ VN GI +W
Sbjct: 410 KITELDVAVNQPHCDAYPANKINPLTEAAQLAQKKRYCDVVKAYLDTVPVNQRGGISVWG 469
Query: 442 ALHPN----GCYQM----------CLTDNNLQNLPA 463
N G Y+ L DNN + PA
Sbjct: 470 TTDANTWLDGLYREQFEDEKISWPLLFDNNYNDKPA 505
>pdb|3NYD|A Chain A, Crystal Structure Of Kemp Eliminase Hg-2 Complexed With
Transition State Analog 5-Nitro Benzotriazole
pdb|3NYD|B Chain B, Crystal Structure Of Kemp Eliminase Hg-2 Complexed With
Transition State Analog 5-Nitro Benzotriazole
Length = 316
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 128/277 (46%), Gaps = 24/277 (8%)
Query: 217 ENELKWYATEPEQGKINYTIADQMMEFVRSNQLIARGHNIFWEDPKYTPAWVRNLTGP-A 275
EN +KW ATEP QG N+ AD ++ + + N + G + W P+WV ++T
Sbjct: 46 ENSMKWDATEPSQGNFNFAGADYLVNWAQQNGKLIGGGMLVWH--SQLPSWVSSITDKNT 103
Query: 276 LQSAVNSRIQSLMNKYKEEFIHWDVSNEMLHFD------FYEQRLGHDATLHFYETAHQS 329
L + + + I +LM +YK + WDV E + D + +G D ++TA +
Sbjct: 104 LTNVMKNHITTLMTRYKGKIRAWDVVGEAFNEDGSLRQTVFLNVIGEDYIPIAFQTARAA 163
Query: 330 DPLATLFMNEFNVVETCSDENSTVDRYISRLRELKRGGVLMDGIGLESHFTVPNLPLMRA 389
DP A L++ ++N+ + + ++R+++ + GV +DGIG ++H + +
Sbjct: 164 DPNAKLYIMDYNLDSASYPKTQAI---VNRVKQWRAAGVPIDGIGSQTHLSAGQGAGVLQ 220
Query: 390 ILDKLATLNLP-IWLTEVDISGKLDKETQAVYLEQVLREGFSHPSVNGIMLWTALHPN-- 446
L LA+ P + + +D++G + Y+ V+ + S GI ++ P+
Sbjct: 221 ALPLLASAGTPEVSILMLDVAGASPTD----YVN-VVNACLNVQSCVGISVFGVADPDSW 275
Query: 447 -GCYQMCLTDNNLQNLPAGNIVDKLLKEWQTGEVTGH 482
L D N PA N ++++ Q G + G
Sbjct: 276 RASTTPLLFDGNFNPKPAYN---AIVQDLQQGSIEGR 309
>pdb|3U7B|A Chain A, A New Crystal Structure Of A Fusarium Oxysporum Gh10
Xylanase Reveals The Presence Of An Extended Loop On Top
Of The Catalytic Cleft
pdb|3U7B|B Chain B, A New Crystal Structure Of A Fusarium Oxysporum Gh10
Xylanase Reveals The Presence Of An Extended Loop On Top
Of The Catalytic Cleft
pdb|3U7B|C Chain C, A New Crystal Structure Of A Fusarium Oxysporum Gh10
Xylanase Reveals The Presence Of An Extended Loop On Top
Of The Catalytic Cleft
pdb|3U7B|D Chain D, A New Crystal Structure Of A Fusarium Oxysporum Gh10
Xylanase Reveals The Presence Of An Extended Loop On Top
Of The Catalytic Cleft
pdb|3U7B|E Chain E, A New Crystal Structure Of A Fusarium Oxysporum Gh10
Xylanase Reveals The Presence Of An Extended Loop On Top
Of The Catalytic Cleft
Length = 327
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 101/210 (48%), Gaps = 24/210 (11%)
Query: 217 ENELKWYATEPEQGKINYTIADQMMEFVRSNQLIARGHNIFWEDPKYTPAWVRN--LTGP 274
EN +KW A +P +G+ N+ ADQ S R H + W P+WV N
Sbjct: 45 ENAMKWEAIQPNRGQFNWGPADQHAAAATSRGYELRCHTLVWH--SQLPSWVANGNWNNQ 102
Query: 275 ALQSAVNSRIQSLMNKYKEEFIHWDVSNEMLHFD------FYEQRLGHDATLHFYETAHQ 328
LQ+ + I ++M +Y+ + HWDV NE L+ D + + +G + A
Sbjct: 103 TLQAVMRDHINAVMGRYRGKCTHWDVVNEALNEDGTYRDSVFLRVIGEAYIPIAFRMALA 162
Query: 329 SDPLATLFMNEFNVVETCSDENSTVDRYISRLRELKRGGVLMDGIGLESHFT-------- 380
+DP L+ N++N +E + + R I+RL +K G+ +DGIGL++H T
Sbjct: 163 ADPTTKLYYNDYN-LEYGNAKTEGAKR-IARL--VKSYGLRIDGIGLQAHMTSESTPTQN 218
Query: 381 --VPNLPLMRAILDKLATLNLPIWLTEVDI 408
P+ + ++L LA L + + TE+DI
Sbjct: 219 TPTPSRAKLASVLQGLADLGVDVAYTELDI 248
>pdb|3MMD|A Chain A, Crystal Structure Of The W241a Mutant Of Xylanase From
Geobacillus Stearothermophilus T-6 (Xt6) Complexed With
Hydrolyzed Xylopentaose
Length = 379
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 123/256 (48%), Gaps = 35/256 (13%)
Query: 181 EQVSKDFPFGSAIASTILGNLPYQKWFVERFNAAVFENELKWYATEPEQGKINYTIADQM 240
++ +F G+A+ L N + FN+ V EN +K + +PE+GK N+ AD++
Sbjct: 22 QRYKNEFTIGAAVEPYQLQNEKDVQMLKRHFNSIVAENVMKPISIQPEEGKFNFEQADRI 81
Query: 241 MEFVRSNQLIARGHNIFWEDPKYTPAW---------VRNLTGPA--------LQSAVNSR 283
++F ++N + R H + W P W + N T P L + +
Sbjct: 82 VKFAKANGMDIRFHTLVWH--SQVPQWFFLDKEGKPMVNETDPVKREQNKQLLLKRLETH 139
Query: 284 IQSLMNKYKEEFIHWDVSNEMLHFDF------YEQRLGHDATLHFYETAHQ--SDPLATL 335
I++++ +YK++ +WDV NE++ D + Q G D ++ A + D + L
Sbjct: 140 IKTIVERYKDDIKYWDVVNEVVGDDGKLRNSPWYQIAGIDYIKVAFQAARKYGGDNI-KL 198
Query: 336 FMNEFNVVETCSDENSTVDRYISRLRELKRGGVLMDGIGLESHFTV--PNLPLMRAILDK 393
+MN++N T + T + +++LK GV +DGIG +SH + P+ + ++
Sbjct: 199 YMNDYN---TEVEPKRTA--LYNLVKQLKEEGVPIDGIGHQSHIQIGAPSEAEIEKTINM 253
Query: 394 LATLNLPIWLTEVDIS 409
A L L +TE+D+S
Sbjct: 254 FAALGLDNQITELDVS 269
>pdb|1HIZ|A Chain A, Xylanase T6 (Xt6) From Bacillus Stearothermophilus
pdb|1R85|A Chain A, Crystal Structure Of The Extracellular Xylanase From
Geobacillus Stearothermophilus T-6 (Xt6): The Wt Enzyme
(Monoclinic Form) At 1.45a Resolution
pdb|1R87|A Chain A, Crystal Structure Of The Extracellular Xylanase From
Geobacillus Stearothermophilus T-6 (Xt6, Monoclinic
Form): The Complex Of The Wt Enzyme With Xylopentaose At
1.67a Resolution
Length = 379
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 123/256 (48%), Gaps = 35/256 (13%)
Query: 181 EQVSKDFPFGSAIASTILGNLPYQKWFVERFNAAVFENELKWYATEPEQGKINYTIADQM 240
++ +F G+A+ L N + FN+ V EN +K + +PE+GK N+ AD++
Sbjct: 22 QRYKNEFTIGAAVEPYQLQNEKDVQMLKRHFNSIVAENVMKPISIQPEEGKFNFEQADRI 81
Query: 241 MEFVRSNQLIARGHNIFWEDPKYTPAW---------VRNLTGPA--------LQSAVNSR 283
++F ++N + R H + W P W + N T P L + +
Sbjct: 82 VKFAKANGMDIRFHTLVWH--SQVPQWFFLDKEGKPMVNETDPVKREQNKQLLLKRLETH 139
Query: 284 IQSLMNKYKEEFIHWDVSNEMLHFDF------YEQRLGHDATLHFYETAHQ--SDPLATL 335
I++++ +YK++ +WDV NE++ D + Q G D ++ A + D + L
Sbjct: 140 IKTIVERYKDDIKYWDVVNEVVGDDGKLRNSPWYQIAGIDYIKVAFQAARKYGGDNI-KL 198
Query: 336 FMNEFNVVETCSDENSTVDRYISRLRELKRGGVLMDGIGLESHFTV--PNLPLMRAILDK 393
+MN++N T + T + +++LK GV +DGIG +SH + P+ + ++
Sbjct: 199 YMNDYN---TEVEPKRTA--LYNLVKQLKEEGVPIDGIGHQSHIQIGWPSEAEIEKTINM 253
Query: 394 LATLNLPIWLTEVDIS 409
A L L +TE+D+S
Sbjct: 254 FAALGLDNQITELDVS 269
>pdb|2CNC|A Chain A, Family 10 Xylanase
Length = 386
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 120/279 (43%), Gaps = 28/279 (10%)
Query: 153 INTERKRAVTIHAAD---GSGDTLQGAEITIEQV------SKDFPFGSAIASTILGNLPY 203
+N R++ + + +A G L A EQ +F G+A+ +TI
Sbjct: 1 MNLSRRQLLALTSAGIAMGQASKLAAATKAAEQTGLKSAYKDNFLIGAALNATIASGADE 60
Query: 204 Q--KWFVERFNAAVFENELKWYATEPEQGKINYTIADQMMEFVRSNQLIARGHNIFW--- 258
+ + FN+ EN +KW QG+ N+ AD + F + L GH + W
Sbjct: 61 RLNTLIAKEFNSITPENCMKWGVLRDAQGQWNWKDADAFVAFGTKHNLHMVGHTLVWHSQ 120
Query: 259 -EDPKYTPAWVRNLTGPALQSAVNSRIQSLMNKYKEEFIHWDVSNEMLHFDF------YE 311
D + A ++ ALQ + I +L +YK + WDV NE + D +
Sbjct: 121 IHDEVFKNADGSYISKAALQKKMEEHITTLAGRYKGKLAAWDVVNEAVGDDLKMRDSHWY 180
Query: 312 QRLGHDATLHFYETAHQSDPLATLFMNEFNVVETCSDENSTVDRYISRLRELKRGGVLMD 371
+ +G D + + A++ DP A L N++N+ T E + + + L++ G+ +
Sbjct: 181 KIMGDDFIYNAFTLANEVDPKAHLMYNDYNIERTGKREAT-----VEMIERLQKRGMPIH 235
Query: 372 GIGLESHFTVPNLPL--MRAILDKLATLNLPIWLTEVDI 408
G+G++ H + P+ + + A L L + T +D+
Sbjct: 236 GLGIQGHLGIDTPPIAEIEKSIIAFAKLGLRVHFTSLDV 274
>pdb|2UWF|A Chain A, Crystal Structure Of Family 10 Xylanase From Bacillus
Halodurans
Length = 356
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 122/255 (47%), Gaps = 34/255 (13%)
Query: 181 EQVSKDFPFGSAIASTILGNLPYQKWFVERFNAAVFENELKWYATEPEQGKINYTIADQM 240
E+ + F G+A+ L Q +N+ V EN +K + +P +G+ N+ AD++
Sbjct: 13 ERYQEQFDIGAAVEPYQLEGRQAQI-LKHHYNSLVAENAMKPVSLQPREGEWNWEGADKI 71
Query: 241 MEFVRSNQLIARGHNIFWEDPKYTPAW---------VRNLTGPALQSA--------VNSR 283
+EF R + + R H + W P W + + T P + A + +
Sbjct: 72 VEFARKHNMELRFHTLVWH--SQVPEWFFIDENGNRMVDETDPEKRKANKQLLLERMENH 129
Query: 284 IQSLMNKYKEEFIHWDVSNEMLHFD------FYEQRLGHDATLHFYETAHQ-SDPLATLF 336
I++++ +YK++ WDV NE++ D + Q G D +ETA + A L+
Sbjct: 130 IKTVVERYKDDVTSWDVVNEVIDDDGGLRESEWYQITGTDYIKVAFETARKYGGEEAKLY 189
Query: 337 MNEFNVVETCSDENSTVDRYISRLRELKRGGVLMDGIGLESHFTV--PNLPLMRAILDKL 394
+N++N ++ S D + +++L GV +DG+G +SH + P++ RA +K
Sbjct: 190 INDYN-----TEVPSKRDDLYNLVKDLLEQGVPIDGVGHQSHIQIGWPSIEDTRASFEKF 244
Query: 395 ATLNLPIWLTEVDIS 409
+L L +TE+D+S
Sbjct: 245 TSLGLDNQVTELDMS 259
>pdb|1UQY|A Chain A, Xylanase Xyn10b Mutant (E262s) From Cellvibrio Mixtus In
Complex With Xylopentaose
pdb|1UQZ|A Chain A, Xylanase Xyn10b Mutant (E262s) From Cellvibrio Mixtus In
Complex With 4-O-Methyl Glucuronic Acid
pdb|1UR1|A Chain A, Xylanase Xyn10b Mutant (E262s) From Cellvibrio Mixtus In
Complex With Arabinofuranose Alpha-1,3 Linked To
Xylobiose
pdb|1UR2|A Chain A, Xylanase Xyn10b Mutant (E262s) From Cellvibrio Mixtus In
Complex With Arabinofuranose Alpha 1,3 Linked To
Xylotriose
Length = 378
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 112/263 (42%), Gaps = 25/263 (9%)
Query: 166 ADGSGDTLQGAEITIEQV------SKDFPFGSAIASTILGNLPYQ--KWFVERFNAAVFE 217
A G L A EQ +F G+A+ +TI + + FN+ E
Sbjct: 8 AMGQASKLAAATKAAEQTGLKSAYKDNFLIGAALNATIASGADERLNTLIAKEFNSITPE 67
Query: 218 NELKWYATEPEQGKINYTIADQMMEFVRSNQLIARGHNIFW----EDPKYTPAWVRNLTG 273
N +KW QG+ N+ AD + F + L GH + W D + A ++
Sbjct: 68 NCMKWGVLRDAQGQWNWKDADAFVAFGTKHNLHMVGHTLVWHSQIHDEVFKNADGSYISK 127
Query: 274 PALQSAVNSRIQSLMNKYKEEFIHWDVSNEMLHFDF------YEQRLGHDATLHFYETAH 327
ALQ + I +L +YK + WDV NE + D + + +G D + + A+
Sbjct: 128 AALQKKMEEHITTLAGRYKGKLAAWDVVNEAVGDDLKMRDSHWYKIMGDDFIYNAFTLAN 187
Query: 328 QSDPLATLFMNEFNVVETCSDENSTVDRYISRLRELKRGGVLMDGIGLESHFTVPNLPL- 386
+ DP A L N++N+ T E + + + L++ G+ + G+G++ H + P+
Sbjct: 188 EVDPKAHLMYNDYNIERTGKREAT-----VEMIERLQKRGMPIHGLGIQGHLGIDTPPIA 242
Query: 387 -MRAILDKLATLNLPIWLTEVDI 408
+ + A L L + T +D+
Sbjct: 243 EIEKSIIAFAKLGLRVHFTSLDV 265
>pdb|1R86|A Chain A, Crystal Structure Of The Extracellular Xylanase From
Geobacillus Stearothermophilus T-6 (Xt6, Monoclinic
Form): The E159aE265A MUTANT AT 1.8A RESOLUTION
Length = 379
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 121/256 (47%), Gaps = 35/256 (13%)
Query: 181 EQVSKDFPFGSAIASTILGNLPYQKWFVERFNAAVFENELKWYATEPEQGKINYTIADQM 240
++ +F G+A+ L N + FN+ V EN +K + +PE+GK N+ AD++
Sbjct: 22 QRYKNEFTIGAAVEPYQLQNEKDVQMLKRHFNSIVAENVMKPISIQPEEGKFNFEQADRI 81
Query: 241 MEFVRSNQLIARGHNIFWEDPKYTPAW---------VRNLTGPA--------LQSAVNSR 283
++F ++N + R H + W P W + N T P L + +
Sbjct: 82 VKFAKANGMDIRFHTLVWH--SQVPQWFFLDKEGKPMVNETDPVKREQNKQLLLKRLETH 139
Query: 284 IQSLMNKYKEEFIHWDVSNEMLHFDF------YEQRLGHDATLHFYETAHQ--SDPLATL 335
I++++ +YK++ +WDV N ++ D + Q G D ++ A + D + L
Sbjct: 140 IKTIVERYKDDIKYWDVVNAVVGDDGKLRNSPWYQIAGIDYIKVAFQAARKYGGDNI-KL 198
Query: 336 FMNEFNVVETCSDENSTVDRYISRLRELKRGGVLMDGIGLESHFTV--PNLPLMRAILDK 393
+MN++N T + T + +++LK GV +DGIG +SH + P+ + ++
Sbjct: 199 YMNDYN---TEVEPKRTA--LYNLVKQLKEEGVPIDGIGHQSHIQIGWPSEAEIEKTINM 253
Query: 394 LATLNLPIWLTEVDIS 409
A L L +T +D+S
Sbjct: 254 FAALGLDNQITALDVS 269
>pdb|2FGL|A Chain A, An Alkali Thermostable F10 XYLANASE FROM ALKALOPHILIC
Bacillus Sp. Ng-27
pdb|2FGL|B Chain B, An Alkali Thermostable F10 XYLANASE FROM ALKALOPHILIC
Bacillus Sp. Ng-27
Length = 354
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 115/259 (44%), Gaps = 38/259 (14%)
Query: 181 EQVSKDFPFGSAIASTILGNLPYQKWFVERFNAAVFENELKWYATEPEQGKINYTIADQM 240
++ + F G+A+ L N K +N+ V EN +K + +PE+G + AD +
Sbjct: 13 DRYEESFDIGAAVEPHQL-NGRQGKVLKHHYNSIVAENAMKPISLQPEEGVFTWDGADAI 71
Query: 241 MEFVRSNQLIARGHNIFWEDPKYTPAWV-----------------RNLTGPALQSAVNSR 283
+EF R N + R H + W + P W R L + +
Sbjct: 72 VEFARKNNMNLRFHTLVWHN--QVPDWFFLDEEGNPMVEETNEAKRQANKELLLERLETH 129
Query: 284 IQSLMNKYKEEFIHWDVSNEM----------LHFDFYEQRLGHDATLHFYETAHQ-SDPL 332
I++++ +YK++ WDV NE+ L + Q G + +ETA + +
Sbjct: 130 IKTVVERYKDDVTAWDVVNEVVDDGTPNERGLRESVWYQITGDEYIRVAFETARKYAGED 189
Query: 333 ATLFMNEFNVVETCSDENSTVDRYISRLRELKRGGVLMDGIGLESHFTV--PNLPLMRAI 390
A LF+N++N T D + +++L GV +DG+G ++H + P + +R
Sbjct: 190 AKLFINDYNTEVTPK-----RDHLYNLVQDLLADGVPIDGVGHQAHIQIDWPTIDEIRTS 244
Query: 391 LDKLATLNLPIWLTEVDIS 409
++ A L L +TE+D+S
Sbjct: 245 MEMFAGLGLDNQVTELDVS 263
>pdb|2F8Q|A Chain A, An Alkali Thermostable F10 XYLANASE FROM ALKALOPHILIC
Bacillus Sp. Ng-27
pdb|2F8Q|B Chain B, An Alkali Thermostable F10 XYLANASE FROM ALKALOPHILIC
Bacillus Sp. Ng-27
Length = 353
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 115/259 (44%), Gaps = 38/259 (14%)
Query: 181 EQVSKDFPFGSAIASTILGNLPYQKWFVERFNAAVFENELKWYATEPEQGKINYTIADQM 240
++ + F G+A+ L N K +N+ V EN +K + +PE+G + AD +
Sbjct: 12 DRYEESFDIGAAVEPHQL-NGRQGKVLKHHYNSIVAENAMKPISLQPEEGVFTWDGADAI 70
Query: 241 MEFVRSNQLIARGHNIFWEDPKYTPAWV-----------------RNLTGPALQSAVNSR 283
+EF R N + R H + W + P W R L + +
Sbjct: 71 VEFARKNNMNLRFHTLVWHN--QVPDWFFLDEEGNPMVEETNEAKRQANKELLLERLETH 128
Query: 284 IQSLMNKYKEEFIHWDVSNEM----------LHFDFYEQRLGHDATLHFYETAHQ-SDPL 332
I++++ +YK++ WDV NE+ L + Q G + +ETA + +
Sbjct: 129 IKTVVERYKDDVTAWDVVNEVVDDGTPNERGLRESVWYQITGDEYIRVAFETARKYAGED 188
Query: 333 ATLFMNEFNVVETCSDENSTVDRYISRLRELKRGGVLMDGIGLESHFTV--PNLPLMRAI 390
A LF+N++N T D + +++L GV +DG+G ++H + P + +R
Sbjct: 189 AKLFINDYNTEVTPK-----RDHLYNLVQDLLADGVPIDGVGHQAHIQIDWPTIDEIRTS 243
Query: 391 LDKLATLNLPIWLTEVDIS 409
++ A L L +TE+D+S
Sbjct: 244 MEMFAGLGLDNQVTELDVS 262
>pdb|4F8X|A Chain A, Penicillium Canescens Endo-1,4-Beta-Xylanase Xyle
Length = 335
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 72/298 (24%), Positives = 122/298 (40%), Gaps = 42/298 (14%)
Query: 200 NLPYQKWFVERFNAAVFENELKWYATEPEQGKINYTIADQMMEFVRSNQLIARGHNIFWE 259
+ Y K + F N +K+ TE EQ N+T +Q +E R HN+ W
Sbjct: 30 DAAYLKVLKQNFGEITPANAMKFMYTETEQNVFNFTEGEQFLEVAERFGSKVRCHNLVWA 89
Query: 260 DPKYTPAWVRNLTGPALQSAVNSRIQSLMNKYKEEFIHWDVSNEMLHFD-FYEQRLGHD- 317
+ T L + + + I + + WDV NE L+ D + + +D
Sbjct: 90 SQVSDFVTSKTWTAKELTAVMKNHIFKTVQHFGRRCYSWDVVNEALNGDGTFSSSVWYDT 149
Query: 318 -ATLHFYET-AHQSDPLATLFMNEFNV------VETCSDENSTVDRYISRLRELKRGGVL 369
+FY + + LA + N+ + +E +++ V + +S LR + G+
Sbjct: 150 IGEEYFYLAFKYAQEALAQIGANDVKLYYNDYGIENPGTKSTAVLQLVSNLR---KRGIR 206
Query: 370 MDGIGLESHFTVPNLPLMRAILDKLAT------LNLPIWLTEVDI--------SGKLDKE 415
+DG+GLESHF V P ++ D+LAT NL + +TE+D+ + K+
Sbjct: 207 IDGVGLESHFIVGETP---SLADQLATKQAYIKANLDVAVTELDVRFSTVPYYTAAAQKQ 263
Query: 416 TQAVYLEQVLREGFSHPSVNGIMLW----------TALHPNGCYQMCLTDNNLQNLPA 463
Y V + P G+++W +A G CL +N L+ PA
Sbjct: 264 QAEDYYVSVASCMNAGPRCIGVVVWDFDDAYSWVPSAFAGQG--GACLFNNTLEAKPA 319
>pdb|2DEP|A Chain A, Crystal Structure Of Xylanase B From Clostridium
Stercorarium F9
pdb|2DEP|B Chain B, Crystal Structure Of Xylanase B From Clostridium
Stercorarium F9
Length = 356
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 110/252 (43%), Gaps = 38/252 (15%)
Query: 187 FPFGSAI-ASTILGNLPYQKWFVERFNAAVFENELKWYATEPEQGKINYTIADQMMEFVR 245
FP G+AI G + + + + N V EN +K + +P +G + AD++++F +
Sbjct: 16 FPIGAAIEPGYTTGQI--AELYKKHVNMLVAENAMKPASLQPTEGNFQWADADRIVQFAK 73
Query: 246 SNQLIARGHNIFWEDPKYTPAWV-----------------RNLTGPALQSAVNSRIQSLM 288
N + R H + W + TP W R L + + I++++
Sbjct: 74 ENGMELRFHTLVWHN--QTPDWFFLDKEGKPMVEETDPQKREENRKLLLQRLENYIRAVV 131
Query: 289 NKYKEEFIHWDVSNE---------MLHFDFYEQRLGHDATLHFYETAHQSDPLATLFMNE 339
+YK++ WDV NE M + +Y+ + F T L++N+
Sbjct: 132 LRYKDDIKSWDVVNEVIEPNDPGGMRNSPWYQITGTEYIEVAFRATREAGGSDIKLYIND 191
Query: 340 FNVVETCSDENSTVDRYISRLRELKRGGVLMDGIGLESHFTVPNLPLMRAI--LDKLATL 397
+N +D+ D ++ L GV +DG+G ++H + N P+ R I + K A L
Sbjct: 192 YN-----TDDPVKRDILYELVKNLLEKGVPIDGVGHQTHIDIYNPPVERIIESIKKFAGL 246
Query: 398 NLPIWLTEVDIS 409
L +TE+D+S
Sbjct: 247 GLDNIITELDMS 258
>pdb|1W2V|A Chain A, The 3-Dimensional Structure Of A Thermostable Mutant Of A
Xylanase (Xyn10a) From Cellvibrio Japonicus
pdb|1W2V|B Chain B, The 3-Dimensional Structure Of A Thermostable Mutant Of A
Xylanase (Xyn10a) From Cellvibrio Japonicus
Length = 348
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 103/250 (41%), Gaps = 34/250 (13%)
Query: 186 DFPFGSAIAST-----ILGNLPYQKWFVERFNAAVFENELKWYATEPEQGKINYTIADQM 240
DFP G A+A++ I + Q FN EN +K + ++T +D++
Sbjct: 8 DFPIGVAVAASGGNADIFTSSARQNIVRAEFNQITAENIMK-MSYMYSGSNFSFTNSDRL 66
Query: 241 MEFVRSNQLIARGHNIFWEDPKYTPAWVRNLTGPALQSAVNSRIQSLMNKYKEEFIHWDV 300
+ + N GH + W P W + + + I ++ + + WDV
Sbjct: 67 VSWAAQNGQTVHGHTLVWHPSYQLPNWASD-SNANFRQDFARHIDTVAAHFAGQVKSWDV 125
Query: 301 SNEMLHFD------------------FYEQRLGHDATLHFYETAHQSDPLATLFMNEFNV 342
NE L FD FY Q G + + A +DP A L+ N+FN
Sbjct: 126 VNEAL-FDSADDPDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAELYYNDFNT 184
Query: 343 VETCSDENSTVDRYISRLRELKRGGVLMDGIGLESHFT--VPNLPLMRAILDKLATLN-- 398
E + + V+ ++ L GV +DG+G + H P++ +R + K+ L+
Sbjct: 185 EENGAKTTALVN----LVQRLLNNGVPIDGVGFQMHVMNDYPSIANIRQAMQKIVALSPT 240
Query: 399 LPIWLTEVDI 408
L I +TE+D+
Sbjct: 241 LKIKITELDV 250
>pdb|1W3H|A Chain A, The 3-Dimensional Structure Of A Thermostable Mutant Of A
Xylanase (Xyn10a) From Cellvibrio Japonicus
pdb|1W3H|B Chain B, The 3-Dimensional Structure Of A Thermostable Mutant Of A
Xylanase (Xyn10a) From Cellvibrio Japonicus
Length = 359
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 103/250 (41%), Gaps = 34/250 (13%)
Query: 186 DFPFGSAIAST-----ILGNLPYQKWFVERFNAAVFENELKWYATEPEQGKINYTIADQM 240
DFP G A+A++ I + Q FN EN +K + ++T +D++
Sbjct: 19 DFPIGVAVAASGGNADIFTSSARQNIVRAEFNQITAENIMK-MSYMYSGSNFSFTNSDRL 77
Query: 241 MEFVRSNQLIARGHNIFWEDPKYTPAWVRNLTGPALQSAVNSRIQSLMNKYKEEFIHWDV 300
+ + N GH + W P W + + + I ++ + + WDV
Sbjct: 78 VSWAAQNGQTVHGHTLVWHPSYQLPNWASD-SNANFRQDFARHIDTVAAHFAGQVKSWDV 136
Query: 301 SNEMLHFD------------------FYEQRLGHDATLHFYETAHQSDPLATLFMNEFNV 342
NE L FD FY Q G + + A +DP A L+ N+FN
Sbjct: 137 VNEAL-FDSADDPDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAELYYNDFNT 195
Query: 343 VETCSDENSTVDRYISRLRELKRGGVLMDGIGLESHFT--VPNLPLMRAILDKLATLN-- 398
E + + V+ ++ L GV +DG+G + H P++ +R + K+ L+
Sbjct: 196 EENGAKTTALVN----LVQRLLNNGVPIDGVGFQMHVMNDYPSIANIRQAMQKIVALSPT 251
Query: 399 LPIWLTEVDI 408
L I +TE+D+
Sbjct: 252 LKIKITELDV 261
>pdb|1W32|A Chain A, The 3-Dimensional Structure Of A Thermostable Mutant Of A
Xylanase (Xyn10a) From Cellvibrio Japonicus
pdb|1W32|B Chain B, The 3-Dimensional Structure Of A Thermostable Mutant Of A
Xylanase (Xyn10a) From Cellvibrio Japonicus
Length = 348
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 103/250 (41%), Gaps = 34/250 (13%)
Query: 186 DFPFGSAIAST-----ILGNLPYQKWFVERFNAAVFENELKWYATEPEQGKINYTIADQM 240
DFP G A+A++ I + Q FN EN +K + ++T +D++
Sbjct: 8 DFPIGVAVAASGGNADIFTSSARQNIVRAEFNQITAENIMK-MSYMYSGSNFSFTNSDRL 66
Query: 241 MEFVRSNQLIARGHNIFWEDPKYTPAWVRNLTGPALQSAVNSRIQSLMNKYKEEFIHWDV 300
+ + N GH + W P W + + + I ++ + + WDV
Sbjct: 67 VSWAAQNGQTVHGHALVWHPSYQLPNWASD-SNANFRQDFARHIDTVAAHFAGQVKSWDV 125
Query: 301 SNEMLHFD------------------FYEQRLGHDATLHFYETAHQSDPLATLFMNEFNV 342
NE L FD FY Q G + + A +DP A L+ N+FN
Sbjct: 126 VNEAL-FDSADDPDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAELYYNDFNT 184
Query: 343 VETCSDENSTVDRYISRLRELKRGGVLMDGIGLESHFT--VPNLPLMRAILDKLATLN-- 398
E + + V+ ++ L GV +DG+G + H P++ +R + K+ L+
Sbjct: 185 EENGAKTTALVN----LVQRLLNNGVPIDGVGFQMHVMNDYPSIANIRQAMQKIVALSPT 240
Query: 399 LPIWLTEVDI 408
L I +TE+D+
Sbjct: 241 LKIKITELDV 250
>pdb|1CLX|A Chain A, Catalytic Core Of Xylanase A
pdb|1CLX|B Chain B, Catalytic Core Of Xylanase A
pdb|1CLX|C Chain C, Catalytic Core Of Xylanase A
pdb|1CLX|D Chain D, Catalytic Core Of Xylanase A
Length = 347
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 103/250 (41%), Gaps = 34/250 (13%)
Query: 186 DFPFGSAIAST-----ILGNLPYQKWFVERFNAAVFENELKWYATEPEQGKINYTIADQM 240
DFP G A+A++ I + Q FN EN +K + ++T +D++
Sbjct: 7 DFPIGVAVAASGGNADIFTSSARQNIVRAEFNQITAENIMK-MSYMYSGSNFSFTNSDRL 65
Query: 241 MEFVRSNQLIARGHNIFWEDPKYTPAWVRNLTGPALQSAVNSRIQSLMNKYKEEFIHWDV 300
+ + N GH + W P W + + + I ++ + + WDV
Sbjct: 66 VSWAAQNGQTVHGHALVWHPSYQLPNWASD-SNANFRQDFARHIDTVAAHFAGQVKSWDV 124
Query: 301 SNEMLHFD------------------FYEQRLGHDATLHFYETAHQSDPLATLFMNEFNV 342
NE L FD FY Q G + + A +DP A L+ N+FN
Sbjct: 125 VNEAL-FDSADDPDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAELYYNDFNT 183
Query: 343 VETCSDENSTVDRYISRLRELKRGGVLMDGIGLESHFT--VPNLPLMRAILDKLATLN-- 398
E + + V+ ++ L GV +DG+G + H P++ +R + K+ L+
Sbjct: 184 EENGAKTTALVN----LVQRLLNNGVPIDGVGFQMHVMNDYPSIANIRQAMQKIVALSPT 239
Query: 399 LPIWLTEVDI 408
L I +TE+D+
Sbjct: 240 LKIKITELDV 249
>pdb|1W2P|A Chain A, The 3-Dimensional Structure Of A Xylanase (Xyn10a) From
Cellvibrio Japonicus
pdb|1W2P|B Chain B, The 3-Dimensional Structure Of A Xylanase (Xyn10a) From
Cellvibrio Japonicus
Length = 348
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 103/250 (41%), Gaps = 34/250 (13%)
Query: 186 DFPFGSAIAST-----ILGNLPYQKWFVERFNAAVFENELKWYATEPEQGKINYTIADQM 240
DFP G A+A++ I + Q FN EN +K + ++T +D++
Sbjct: 8 DFPIGVAVAASGGNADIFTSSARQNIVRAEFNQITAENIMK-MSYMYSGSNFSFTNSDRL 66
Query: 241 MEFVRSNQLIARGHNIFWEDPKYTPAWVRNLTGPALQSAVNSRIQSLMNKYKEEFIHWDV 300
+ + N GH + W P W + + + I ++ + + WDV
Sbjct: 67 VSWAAQNGQTVHGHALVWHPSYQLPNWASD-SNANFRQDFARHIDTVAAHFAGQVKSWDV 125
Query: 301 SNEMLHFD------------------FYEQRLGHDATLHFYETAHQSDPLATLFMNEFNV 342
NE L FD FY Q G + + A +DP A L+ N+FN
Sbjct: 126 VNEAL-FDSADDPDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAELYYNDFNT 184
Query: 343 VETCSDENSTVDRYISRLRELKRGGVLMDGIGLESHFT--VPNLPLMRAILDKLATLN-- 398
E + + V+ ++ L GV +DG+G + H P++ +R + K+ L+
Sbjct: 185 EENGAKTTALVN----LVQRLLNNGVPIDGVGFQMHVMNDYPSIANIRQAMQKIVALSPT 240
Query: 399 LPIWLTEVDI 408
L I +TE+D+
Sbjct: 241 LKIKITELDV 250
>pdb|1E5N|A Chain A, E246c Mutant Of P Fluorescens Subsp. Cellulosa Xylanase A
In Complex With Xylopentaose
pdb|1E5N|B Chain B, E246c Mutant Of P Fluorescens Subsp. Cellulosa Xylanase A
In Complex With Xylopentaose
Length = 348
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 102/250 (40%), Gaps = 34/250 (13%)
Query: 186 DFPFGSAIAST-----ILGNLPYQKWFVERFNAAVFENELKWYATEPEQGKINYTIADQM 240
DFP G A+A++ I + Q FN EN +K + ++T +D++
Sbjct: 8 DFPIGVAVAASGGNADIFTSSARQNIVRAEFNQITAENIMK-MSYMYSGSNFSFTNSDRL 66
Query: 241 MEFVRSNQLIARGHNIFWEDPKYTPAWVRNLTGPALQSAVNSRIQSLMNKYKEEFIHWDV 300
+ + N GH + W P W + + + I ++ + + WDV
Sbjct: 67 VSWAAQNGQTVHGHALVWHPSYQLPNWASD-SNANFRQDFARHIDTVAAHFAGQVKSWDV 125
Query: 301 SNEMLHFD------------------FYEQRLGHDATLHFYETAHQSDPLATLFMNEFNV 342
NE L FD FY Q G + + A +DP A L+ N+FN
Sbjct: 126 VNEAL-FDSADDPDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAELYYNDFNT 184
Query: 343 VETCSDENSTVDRYISRLRELKRGGVLMDGIGLESHFT--VPNLPLMRAILDKLATLN-- 398
E + + V+ ++ L GV +DG+G + H P++ +R + K+ L+
Sbjct: 185 EENGAKTTALVN----LVQRLLNNGVPIDGVGFQMHVMNDYPSIANIRQAMQKIVALSPT 240
Query: 399 LPIWLTEVDI 408
L I +T +D+
Sbjct: 241 LKIKITCLDV 250
>pdb|1XYS|A Chain A, Catalytic Core Of Xylanase A E246c Mutant
pdb|1XYS|B Chain B, Catalytic Core Of Xylanase A E246c Mutant
Length = 347
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 102/250 (40%), Gaps = 34/250 (13%)
Query: 186 DFPFGSAIAST-----ILGNLPYQKWFVERFNAAVFENELKWYATEPEQGKINYTIADQM 240
DFP G A+A++ I + Q FN EN +K + ++T +D++
Sbjct: 7 DFPIGVAVAASGGNADIFTSSARQNIVRAEFNQITAENIMK-MSYMYSGSNFSFTNSDRL 65
Query: 241 MEFVRSNQLIARGHNIFWEDPKYTPAWVRNLTGPALQSAVNSRIQSLMNKYKEEFIHWDV 300
+ + N GH + W P W + + + I ++ + + WDV
Sbjct: 66 VSWAAQNGQTVHGHALVWHPSYQLPNWASD-SNANFRQDFARHIDTVAAHFAGQVKSWDV 124
Query: 301 SNEMLHFD------------------FYEQRLGHDATLHFYETAHQSDPLATLFMNEFNV 342
NE L FD FY Q G + + A +DP A L+ N+FN
Sbjct: 125 VNEAL-FDSADDPDGRGSANGYRQSVFYRQFGGPEYIDEAFRRARAADPTAELYYNDFNT 183
Query: 343 VETCSDENSTVDRYISRLRELKRGGVLMDGIGLESHFT--VPNLPLMRAILDKLATLN-- 398
E + + V+ ++ L GV +DG+G + H P++ +R + K+ L+
Sbjct: 184 EENGAKTTALVN----LVQRLLNNGVPIDGVGFQMHVMNDYPSIANIRQAMQKIVALSPT 239
Query: 399 LPIWLTEVDI 408
L I +T +D+
Sbjct: 240 LKIKITCLDV 249
>pdb|3RDK|A Chain A, Protein Crystal Structure Of Xylanase A1 Of Paenibacillus
Sp. Jdr-2
pdb|3RDK|B Chain B, Protein Crystal Structure Of Xylanase A1 Of Paenibacillus
Sp. Jdr-2
pdb|4E4P|A Chain A, Second Native Structure Of Xylanase A1 From Paenibacillus
Sp. Jdr-2
pdb|4E4P|B Chain B, Second Native Structure Of Xylanase A1 From Paenibacillus
Sp. Jdr-2
pdb|3RO8|A Chain A, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|B Chain B, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|C Chain C, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|D Chain D, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|E Chain E, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|F Chain F, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|G Chain G, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|H Chain H, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
Length = 341
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 117/260 (45%), Gaps = 41/260 (15%)
Query: 186 DFPFGSAIASTILGNLPYQKWFVERFNAAVFENELKWYATEPEQGKINYTIADQMMEFVR 245
DF G+AI++ L + + N +K A +P +G +T AD M++ V
Sbjct: 14 DFLIGNAISAEDLEGTRLE-LLKMHHDVVTAGNAMKPDALQPTKGNFTFTAADAMIDKVL 72
Query: 246 SNQLIARGHNIFWEDPKYTPAWV------RNLTGP-----ALQSAVNSRIQSLMNKYKEE 294
+ + GH + W + +PAW+ N T P AL + + + IQ++M + +
Sbjct: 73 AEGMKMHGHVLVWH--QQSPAWLNTKKDDNNNTVPLGRDEALDN-LRTHIQTVMKHFGNK 129
Query: 295 FIHWDVSNEMLH------FDF--------YEQRLGHDATLHFYETAHQ---SDPL--ATL 335
I WDV NE ++ D+ + Q +G D + A + +P L
Sbjct: 130 VISWDVVNEAMNDNPSNPADYKASLRQTPWYQAIGSDYVEQAFLAAREVLDENPSWNIKL 189
Query: 336 FMNEFNVVETCSDENSTVDRYI----SRLRELKRGGVLMDGIGLESHFTVPNLPL-MRAI 390
+ N++N E ++ + + + R G +L+DG+G++ H+ + P ++
Sbjct: 190 YYNDYN--EDNQNKATAIYNMVKDINDRYAAAHNGKLLIDGVGMQGHYNINTNPDNVKLS 247
Query: 391 LDKLATLNLPIWLTEVDISG 410
L+K +L + + ++E+D++
Sbjct: 248 LEKFISLGVEVSVSELDVTA 267
>pdb|2W5F|A Chain A, High Resolution Crystallographic Structure Of The
Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D-
Xylanase 10b (Xyn10b) Cbm22-1-Gh10 Modules Complexed
With Xylohexaose
pdb|2W5F|B Chain B, High Resolution Crystallographic Structure Of The
Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D-
Xylanase 10b (Xyn10b) Cbm22-1-Gh10 Modules Complexed
With Xylohexaose
Length = 540
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 79/348 (22%), Positives = 124/348 (35%), Gaps = 60/348 (17%)
Query: 187 FPFGSAIASTILGNLPYQKWFVERFNAAVFENELKWYATEPEQGKINYTI------ADQM 240
F GS + S + N + + FN+ ENE+K AT + G N I A +
Sbjct: 192 FRVGSVLNSGTVNNSSIKALILREFNSITCENEMKPDATLVQSGSTNTNIRVSLNRAASI 251
Query: 241 MEFVRSNQLIARGHNIFWEDPKYTPAW-----VRNLTGPALQSAVNSRIQSLMNKYKEEF 295
+ F N + RGH + W TP W ++ QS ++ R++S + E
Sbjct: 252 LNFCAQNNIAVRGHTLVWHSQ--TPQWFFKDNFQDNGNWVSQSVMDQRLESYIKNMFAEI 309
Query: 296 IHWDVSNEMLHFDFYEQRLGHDAT-LHFYETAHQ------SDPLATLFMNE------FNV 342
S + +D + DA +Y A + P ++ + F
Sbjct: 310 QRQYPSLNLYAYDVVNAAVSDDANRTRYYGGAREPGYGNGRSPWVQIYGDNKFIEKAFTY 369
Query: 343 VETCSDENSTV-------------DRYISRLRELKRGGVLMDGIGLESHFTV-----PNL 384
+ N + D S L G L+DG+G++SH +
Sbjct: 370 ARKYAPANCKLYYNDYNEYWDHKRDCIASICANLYNKG-LLDGVGMQSHINADMNGFSGI 428
Query: 385 PLMRAILDKLATLNLPIWLTEVDIS---GKLDKETQAVYLEQVLREGF------SHPSVN 435
+A L K + + +TE+DIS GK + QA + V + S V
Sbjct: 429 QNYKAALQKYINIGCDVQITELDISTENGKFSLQQQADKYKAVFQAAVDINRTSSKGKVT 488
Query: 436 GIMLWTALHPN---GCYQMCLTDN-NLQNLPAGNIVDKLL--KEWQTG 477
+ +W N G L N N Q PA N V ++ EW G
Sbjct: 489 AVCVWGPNDANTWLGSQNAPLLFNANNQPKPAYNAVASIIPQSEWGDG 536
>pdb|2WYS|A Chain A, High Resolution Crystallographic Structure Of The
Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D-
Xylanase 10b (Xyn10b) Cbm22-1-Gh10 Modules Complexed
With Xylohexaose
pdb|2WYS|B Chain B, High Resolution Crystallographic Structure Of The
Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D-
Xylanase 10b (Xyn10b) Cbm22-1-Gh10 Modules Complexed
With Xylohexaose
pdb|2WZE|A Chain A, High Resolution Crystallographic Structure Of The
Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D
Xylanas Xylohexaose
pdb|2WZE|B Chain B, High Resolution Crystallographic Structure Of The
Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D
Xylanas Xylohexaose
Length = 540
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/348 (22%), Positives = 121/348 (34%), Gaps = 60/348 (17%)
Query: 187 FPFGSAIASTILGNLPYQKWFVERFNAAVFENELKWYATEPEQGKINYTI------ADQM 240
F GS + S + N + + FN+ ENE K AT + G N I A +
Sbjct: 192 FRVGSVLNSGTVNNSSIKALILREFNSITCENEXKPDATLVQSGSTNTNIRVSLNRAASI 251
Query: 241 MEFVRSNQLIARGHNIFWEDPKYTPAW-----VRNLTGPALQSAVNSRIQSLMNKYKEEF 295
+ F N + RGH + W TP W ++ QS + R++S + E
Sbjct: 252 LNFCAQNNIAVRGHTLVWHSQ--TPQWFFKDNFQDNGNWVSQSVXDQRLESYIKNXFAEI 309
Query: 296 IHWDVSNEMLHFDFYEQRLGHDAT-LHFYETAHQ------SDPLATLFMNE------FNV 342
S + +D + DA +Y A + P ++ + F
Sbjct: 310 QRQYPSLNLYAYDVVNAAVSDDANRTRYYGGAREPGYGNGRSPWVQIYGDNKFIEKAFTY 369
Query: 343 VETCSDENSTV-------------DRYISRLRELKRGGVLMDGIGLESHFTV-----PNL 384
+ N + D S L G L+DG+G +SH +
Sbjct: 370 ARKYAPANCKLYYNDYNEYWDHKRDCIASICANLYNKG-LLDGVGXQSHINADXNGFSGI 428
Query: 385 PLMRAILDKLATLNLPIWLTEVDIS---GKLDKETQAVYLEQVLREGF------SHPSVN 435
+A L K + + +TE+DIS GK + QA + V + S V
Sbjct: 429 QNYKAALQKYINIGCDVQITELDISTENGKFSLQQQADKYKAVFQAAVDINRTSSKGKVT 488
Query: 436 GIMLWTALHPN---GCYQMCLTDN-NLQNLPAGNIVDKLL--KEWQTG 477
+ +W N G L N N Q PA N V ++ EW G
Sbjct: 489 AVCVWGPNDANTWLGSQNAPLLFNANNQPKPAYNAVASIIPQSEWGDG 536
>pdb|2VJK|A Chain A, Formyl-Coa Transferase With Aspartyl-Coa Thioester
Intermediate Derived From Oxalyl-Coa
pdb|2VJK|B Chain B, Formyl-Coa Transferase With Aspartyl-Coa Thioester
Intermediate Derived From Oxalyl-Coa
pdb|2VJL|A Chain A, Formyl-Coa Transferase With Aspartyl-Coa Thioester
Intermediate Derived From Formyl-Coa
pdb|2VJL|B Chain B, Formyl-Coa Transferase With Aspartyl-Coa Thioester
Intermediate Derived From Formyl-Coa
pdb|2VJM|A Chain A, Formyl-Coa Transferase With Aspartyl-Formyl Anhydide
Intermediate
Length = 428
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 45/112 (40%), Gaps = 14/112 (12%)
Query: 11 ECKELPEQPLYNGGMLKNHPPENFSSIAHFSTGFYTPAFILHNLTPGTIYCFSIWLKIEG 70
E KEL EQ + ++ ENF A GF T +I L P I ++G
Sbjct: 78 EGKELLEQMIKKADVMV----ENFGPGALDRMGF-TWEYI-QELNPRVILA-----SVKG 126
Query: 71 ANSAHVRASLKTENSVYNCVGSAAAKQGCWS---FLKGGFVLDSPSNLSILF 119
H LK +V C G AAA G W + G + DS S + ++
Sbjct: 127 YAEGHANEHLKVYENVAQCSGGAAATTGFWDGPPTVSGAALGDSNSGMHLMI 178
>pdb|1P5H|A Chain A, Crystal Structure Of Formyl-Coa Transferase (Apoenzyme)
From Oxalobacter Formigenes
pdb|1P5H|B Chain B, Crystal Structure Of Formyl-Coa Transferase (Apoenzyme)
From Oxalobacter Formigenes
pdb|1P5R|A Chain A, Formyl-Coa Transferase In Complex With Coenzyme A
pdb|1P5R|B Chain B, Formyl-Coa Transferase In Complex With Coenzyme A
Length = 428
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 45/112 (40%), Gaps = 14/112 (12%)
Query: 11 ECKELPEQPLYNGGMLKNHPPENFSSIAHFSTGFYTPAFILHNLTPGTIYCFSIWLKIEG 70
E KEL EQ + ++ ENF A GF T +I L P I ++G
Sbjct: 78 EGKELLEQMIKKADVMV----ENFGPGALDRMGF-TWEYI-QELNPRVILA-----SVKG 126
Query: 71 ANSAHVRASLKTENSVYNCVGSAAAKQGCWS---FLKGGFVLDSPSNLSILF 119
H LK +V C G AAA G W + G + DS S + ++
Sbjct: 127 YAEGHANEHLKVYENVAQCSGGAAATTGFWDGPPTVSGAALGDSNSGMHLMI 178
>pdb|1T4C|A Chain A, Formyl-Coa Transferase In Complex With Oxalyl-Coa
Length = 427
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 45/112 (40%), Gaps = 14/112 (12%)
Query: 11 ECKELPEQPLYNGGMLKNHPPENFSSIAHFSTGFYTPAFILHNLTPGTIYCFSIWLKIEG 70
E KEL EQ + ++ ENF A GF T +I L P I ++G
Sbjct: 77 EGKELLEQMIKKADVMV----ENFGPGALDRMGF-TWEYI-QELNPRVILA-----SVKG 125
Query: 71 ANSAHVRASLKTENSVYNCVGSAAAKQGCWS---FLKGGFVLDSPSNLSILF 119
H LK +V C G AAA G W + G + DS S + ++
Sbjct: 126 YAEGHANEHLKVYENVAQCSGGAAATTGFWDGPPTVSGAALGDSNSGMHLMI 177
>pdb|2VJO|A Chain A, Formyl-Coa Transferase Mutant Variant Q17a With Aspartyl-
Coa Thioester Intermediates And Oxalate
pdb|2VJO|B Chain B, Formyl-Coa Transferase Mutant Variant Q17a With Aspartyl-
Coa Thioester Intermediates And Oxalate
Length = 428
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 45/112 (40%), Gaps = 14/112 (12%)
Query: 11 ECKELPEQPLYNGGMLKNHPPENFSSIAHFSTGFYTPAFILHNLTPGTIYCFSIWLKIEG 70
E KEL EQ + ++ ENF A GF T +I L P I ++G
Sbjct: 78 EGKELLEQMIKKADVMV----ENFGPGALDRMGF-TWEYI-QELNPRVILA-----SVKG 126
Query: 71 ANSAHVRASLKTENSVYNCVGSAAAKQGCWS---FLKGGFVLDSPSNLSILF 119
H LK +V C G AAA G W + G + DS S + ++
Sbjct: 127 YAEGHANEHLKVYENVAQCSGGAAATTGFWDGPPTVSGAALGDSNSGMHLMI 178
>pdb|2VJQ|A Chain A, Formyl-Coa Transferase Mutant Variant W48q
pdb|2VJQ|B Chain B, Formyl-Coa Transferase Mutant Variant W48q
pdb|2VJQ|C Chain C, Formyl-Coa Transferase Mutant Variant W48q
pdb|2VJQ|D Chain D, Formyl-Coa Transferase Mutant Variant W48q
Length = 428
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 45/112 (40%), Gaps = 14/112 (12%)
Query: 11 ECKELPEQPLYNGGMLKNHPPENFSSIAHFSTGFYTPAFILHNLTPGTIYCFSIWLKIEG 70
E KEL EQ + ++ ENF A GF T +I L P I ++G
Sbjct: 78 EGKELLEQMIKKADVMV----ENFGPGALDRMGF-TWEYI-QELNPRVILA-----SVKG 126
Query: 71 ANSAHVRASLKTENSVYNCVGSAAAKQGCWS---FLKGGFVLDSPSNLSILF 119
H LK +V C G AAA G W + G + DS S + ++
Sbjct: 127 YAEGHANEHLKVYENVAQCSGGAAATTGFWDGPPTVSGAALGDSNSGMHLMI 178
>pdb|2VJP|A Chain A, Formyl-Coa Transferase Mutant Variant W48f
pdb|2VJP|B Chain B, Formyl-Coa Transferase Mutant Variant W48f
Length = 428
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 45/112 (40%), Gaps = 14/112 (12%)
Query: 11 ECKELPEQPLYNGGMLKNHPPENFSSIAHFSTGFYTPAFILHNLTPGTIYCFSIWLKIEG 70
E KEL EQ + ++ ENF A GF T +I L P I ++G
Sbjct: 78 EGKELLEQMIKKADVMV----ENFGPGALDRMGF-TWEYI-QELNPRVILA-----SVKG 126
Query: 71 ANSAHVRASLKTENSVYNCVGSAAAKQGCWS---FLKGGFVLDSPSNLSILF 119
H LK +V C G AAA G W + G + DS S + ++
Sbjct: 127 YAEGHANEHLKVYENVAQCSGGAAATTGFWDGPPTVSGAALGDSNSGMHLMI 178
>pdb|2VJN|A Chain A, Formyl-coa Transferase Mutant Variant G260a
pdb|2VJN|B Chain B, Formyl-coa Transferase Mutant Variant G260a
Length = 428
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 45/112 (40%), Gaps = 14/112 (12%)
Query: 11 ECKELPEQPLYNGGMLKNHPPENFSSIAHFSTGFYTPAFILHNLTPGTIYCFSIWLKIEG 70
E KEL EQ + ++ ENF A GF T +I L P I ++G
Sbjct: 78 EGKELLEQMIKKADVMV----ENFGPGALDRMGF-TWEYI-QELNPRVILA-----SVKG 126
Query: 71 ANSAHVRASLKTENSVYNCVGSAAAKQGCWS---FLKGGFVLDSPSNLSILF 119
H LK +V C G AAA G W + G + DS S + ++
Sbjct: 127 YAEGHANEHLKVYENVAQCSGGAAATTGFWDGPPTVSGAALGDSNSGMHLMI 178
>pdb|1VGR|A Chain A, Formyl-Coa Transferase Mutant Asp169 To Glu
pdb|1VGR|B Chain B, Formyl-Coa Transferase Mutant Asp169 To Glu
Length = 427
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
Query: 11 ECKELPEQPLYNGGMLKNHPPENFSSIAHFSTGFYTPAFILHNLTPGTIYCFSIWLKIEG 70
E KEL EQ + ++ ENF A GF T +I L P I ++G
Sbjct: 77 EGKELLEQMIKKADVMV----ENFGPGALDRMGF-TWEYI-QELNPRVILA-----SVKG 125
Query: 71 ANSAHVRASLKTENSVYNCVGSAAAKQGCW 100
H LK +V C G AAA G W
Sbjct: 126 YAEGHANEHLKVYENVAQCSGGAAATTGFW 155
>pdb|1T3Z|A Chain A, Formyl-Coa Tranferase Mutant Asp169 To Ser
pdb|1T3Z|B Chain B, Formyl-Coa Tranferase Mutant Asp169 To Ser
Length = 427
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
Query: 11 ECKELPEQPLYNGGMLKNHPPENFSSIAHFSTGFYTPAFILHNLTPGTIYCFSIWLKIEG 70
E KEL EQ + ++ ENF A GF T +I L P I ++G
Sbjct: 77 EGKELLEQMIKKADVMV----ENFGPGALDRMGF-TWEYI-QELNPRVILA-----SVKG 125
Query: 71 ANSAHVRASLKTENSVYNCVGSAAAKQGCW 100
H LK +V C G AAA G W
Sbjct: 126 YAEGHANEHLKVYENVAQCSGGAAATTGFW 155
>pdb|1VGQ|A Chain A, Formyl-Coa Transferase Mutant Asp169 To Ala
pdb|1VGQ|B Chain B, Formyl-Coa Transferase Mutant Asp169 To Ala
Length = 427
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
Query: 11 ECKELPEQPLYNGGMLKNHPPENFSSIAHFSTGFYTPAFILHNLTPGTIYCFSIWLKIEG 70
E KEL EQ + ++ ENF A GF T +I L P I ++G
Sbjct: 77 EGKELLEQMIKKADVMV----ENFGPGALDRMGF-TWEYI-QELNPRVILA-----SVKG 125
Query: 71 ANSAHVRASLKTENSVYNCVGSAAAKQGCW 100
H LK +V C G AAA G W
Sbjct: 126 YAEGHANEHLKVYENVAQCSGGAAATTGFW 155
>pdb|2VJM|B Chain B, Formyl-Coa Transferase With Aspartyl-Formyl Anhydide
Intermediate
Length = 428
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
Query: 11 ECKELPEQPLYNGGMLKNHPPENFSSIAHFSTGFYTPAFILHNLTPGTIYCFSIWLKIEG 70
E KEL EQ + ++ ENF A GF T +I L P I ++G
Sbjct: 78 EGKELLEQMIKKADVMV----ENFGPGALDRMGF-TWEYI-QELNPRVILA-----SVKG 126
Query: 71 ANSAHVRASLKTENSVYNCVGSAAAKQGCW 100
H LK +V C G AAA G W
Sbjct: 127 YAEGHANEHLKVYENVAQCSGGAAATTGFW 156
>pdb|1T4C|B Chain B, Formyl-Coa Transferase In Complex With Oxalyl-Coa
Length = 427
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
Query: 11 ECKELPEQPLYNGGMLKNHPPENFSSIAHFSTGFYTPAFILHNLTPGTIYCFSIWLKIEG 70
E KEL EQ + ++ ENF A GF T +I L P I ++G
Sbjct: 77 EGKELLEQMIKKADVMV----ENFGPGALDRMGF-TWEYI-QELNPRVILA-----SVKG 125
Query: 71 ANSAHVRASLKTENSVYNCVGSAAAKQGCW 100
H LK +V C G AAA G W
Sbjct: 126 YAEGHANEHLKVYENVAQCSGGAAATTGFW 155
>pdb|3U7V|A Chain A, The Structure Of A Putative Beta-Galactosidase From
Caulobacter Crescentus Cb15
Length = 552
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
Query: 208 VERFNAAVFENELKWYATEPEQGKINYTIADQMMEFVRSNQLIARGHNIFW------EDP 261
+E+ A + + W EP +G+ +++ D ++E R ++ + W P
Sbjct: 82 IEKVGANTVQVPIAWEQIEPVEGQFDFSYLDLLLEQARERKVRLV---LLWFGTWKNSSP 138
Query: 262 KYTPAWVR 269
Y P WV+
Sbjct: 139 SYAPEWVK 146
>pdb|3S8W|A Chain A, D2 Domain Of Human Ifnar2
pdb|3S8W|B Chain B, D2 Domain Of Human Ifnar2
pdb|3S8W|C Chain C, D2 Domain Of Human Ifnar2
Length = 105
Score = 29.3 bits (64), Expect = 5.3, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 24 GMLKNHPPENFSSIAHFSTGFYTPAFILHNLTPGTIYCFSIWLKIEGANSAHVRASLK 81
G++K H PE I +G +T +I+ L P T YC S++L+ A +++ LK
Sbjct: 49 GIVKKHKPE----IKGNXSGNFT--YIIDKLIPNTNYCVSVYLE-HSDEQAVIKSPLK 99
>pdb|3ZIU|A Chain A, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
pdb|3ZIU|B Chain B, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
Length = 637
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 40/107 (37%), Gaps = 12/107 (11%)
Query: 144 QWRFNQQYIINTERKRAVTIHAADGSGDTLQGAEITI----EQVSK--DFP-FGSAIAST 196
QW F Q Y R V ++ G G L EI E VS+ FP + +
Sbjct: 141 QWIFKQIYKKGLAEIREVDVNWCPGLGTVLANEEIVENDKGEMVSERGSFPVYKKPMKQW 200
Query: 197 ILGNLPYQKWFVERFNAAVFENELK-----WYATEPEQGKINYTIAD 238
+L Y +E N + + LK W E GKI Y + D
Sbjct: 201 VLKITNYADRLLEDLNLLDWPDSLKKLQTNWIGKEEIDGKITYKLQD 247
>pdb|1N6U|A Chain A, Nmr Structure Of The Interferon-Binding Ectodomain Of The
Human Interferon Receptor
pdb|1N6V|A Chain A, Average Structure Of The Interferon-Binding Ectodomain Of
The Human Type I Interferon Receptor
pdb|2HYM|A Chain A, Nmr Based Docking Model Of The Complex Between The Human
Type I Interferon Receptor And Human Interferon Alpha-2
pdb|2KZ1|B Chain B, Inter-Molecular Interactions In A 44 Kda
Interferon-Receptor Complex Detected By Asymmetric
Back-Protonation And 2d Noesy
pdb|2LAG|B Chain B, Structure Of The 44 Kda Complex Of Interferon-Alpha2 With
The Extracellular Part Of Ifnar2 Obtained By 2d-Double
Difference Noesy
Length = 212
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 24 GMLKNHPPENFSSIAHFSTGFYTPAFILHNLTPGTIYCFSIWLKIEGANSAHVRASLK 81
G++K H PE I +G +T +I+ L P T YC S++L+ A +++ LK
Sbjct: 149 GIVKKHKPE----IKGNMSGNFT--YIIDKLIPNTNYCVSVYLE-HSDEQAVIKSPLK 199
>pdb|3SE3|C Chain C, Human Ifna2-Ifnar Ternary Complex
pdb|3SE4|C Chain C, Human Ifnw-Ifnar Ternary Complex
Length = 199
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 24 GMLKNHPPENFSSIAHFSTGFYTPAFILHNLTPGTIYCFSIWLKIEGANSAHVRASLK 81
G++K H PE I +G +T +I+ L P T YC S++L+ A +++ LK
Sbjct: 143 GIVKKHKPE----IKGNMSGNFT--YIIDKLIPNTNYCVSVYLE-HSDEQAVIKSPLK 193
>pdb|3S9D|B Chain B, Binary Complex Between Ifna2 And Ifnar2
pdb|3S9D|D Chain D, Binary Complex Between Ifna2 And Ifnar2
Length = 199
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 24 GMLKNHPPENFSSIAHFSTGFYTPAFILHNLTPGTIYCFSIWLKIEGANSAHVRASLK 81
G++K H PE I +G +T +I+ L P T YC S++L+ A +++ LK
Sbjct: 143 GIVKKHKPE----IKGNMSGNFT--YIIDKLIPNTNYCVSVYLE-HSDEQAVIKSPLK 193
>pdb|2IBJ|A Chain A, Structure Of House Fly Cytochrome B5
Length = 88
Score = 28.5 bits (62), Expect = 8.8, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 312 QRLGHDATLHFYETAHQSDPLATLFMNEFNVVETCSDENS 351
++ G DAT HF + H SD A M ++ V E ++E S
Sbjct: 50 EQAGKDATEHFEDVGHSSD--AREMMKQYKVGELVAEERS 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,042,467
Number of Sequences: 62578
Number of extensions: 741132
Number of successful extensions: 1812
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1652
Number of HSP's gapped (non-prelim): 75
length of query: 528
length of database: 14,973,337
effective HSP length: 103
effective length of query: 425
effective length of database: 8,527,803
effective search space: 3624316275
effective search space used: 3624316275
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)