Query 035723
Match_columns 528
No_of_seqs 306 out of 1557
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 05:46:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035723.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035723hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00331 Glyco_hydro_10: Glyco 100.0 1.8E-68 3.9E-73 547.3 24.0 282 182-470 5-319 (320)
2 COG3693 XynA Beta-1,4-xylanase 100.0 2.1E-63 4.7E-68 486.5 26.9 259 206-471 53-341 (345)
3 smart00633 Glyco_10 Glycosyl h 100.0 4.9E-59 1.1E-63 463.7 26.3 242 220-467 1-254 (254)
4 PF07745 Glyco_hydro_53: Glyco 99.6 3.8E-13 8.2E-18 137.5 24.1 250 204-467 30-332 (332)
5 PF00150 Cellulase: Cellulase 99.4 4.3E-12 9.4E-17 127.3 18.8 244 166-444 1-279 (281)
6 PF01229 Glyco_hydro_39: Glyco 99.4 3.2E-12 6.9E-17 138.9 16.2 246 209-470 52-359 (486)
7 PF02449 Glyco_hydro_42: Beta- 99.4 1.6E-11 3.4E-16 129.4 20.9 247 207-474 20-371 (374)
8 TIGR03356 BGL beta-galactosida 99.4 8.8E-11 1.9E-15 125.4 22.3 244 208-459 65-414 (427)
9 PF02018 CBM_4_9: Carbohydrate 99.3 9.3E-11 2E-15 103.8 14.5 91 31-123 33-127 (131)
10 PF11790 Glyco_hydro_cc: Glyco 99.2 9.9E-10 2.1E-14 108.5 18.5 165 292-466 63-238 (239)
11 PF00232 Glyco_hydro_1: Glycos 99.2 4.3E-10 9.4E-15 121.3 15.8 257 209-472 70-451 (455)
12 PLN02998 beta-glucosidase 99.1 1.1E-08 2.5E-13 110.8 24.4 255 210-473 95-487 (497)
13 PRK10150 beta-D-glucuronidase; 99.1 1.4E-08 3.1E-13 113.5 25.0 228 209-471 325-592 (604)
14 PRK13511 6-phospho-beta-galact 99.1 2.2E-08 4.8E-13 108.2 25.1 257 209-473 66-465 (469)
15 PLN02814 beta-glucosidase 99.0 3.9E-08 8.5E-13 106.8 23.5 257 209-473 89-482 (504)
16 PRK09593 arb 6-phospho-beta-gl 99.0 6.8E-08 1.5E-12 104.5 23.8 257 209-473 85-472 (478)
17 PRK15014 6-phospho-beta-glucos 99.0 1.3E-07 2.8E-12 102.2 25.8 262 205-473 76-472 (477)
18 PRK09852 cryptic 6-phospho-bet 99.0 9.6E-08 2.1E-12 103.1 24.2 258 209-472 83-467 (474)
19 PRK09589 celA 6-phospho-beta-g 98.9 2.7E-07 5.9E-12 99.8 25.5 258 209-473 79-471 (476)
20 PLN02849 beta-glucosidase 98.9 3E-07 6.6E-12 99.9 23.4 256 209-473 91-482 (503)
21 TIGR01233 lacG 6-phospho-beta- 98.8 7.2E-07 1.6E-11 96.4 24.5 257 209-473 65-463 (467)
22 COG2723 BglB Beta-glucosidase/ 98.6 8.1E-06 1.8E-10 86.3 22.2 263 202-472 60-451 (460)
23 COG3867 Arabinogalactan endo-1 98.5 2E-05 4.3E-10 77.8 20.2 278 180-469 32-393 (403)
24 PF02836 Glyco_hydro_2_C: Glyc 98.4 3.7E-05 8E-10 78.5 19.7 215 208-471 47-293 (298)
25 PF01301 Glyco_hydro_35: Glyco 98.3 7.8E-05 1.7E-09 76.8 21.7 262 187-473 10-318 (319)
26 PRK10340 ebgA cryptic beta-D-g 97.9 0.0018 3.9E-08 76.6 23.8 202 209-472 367-600 (1021)
27 PF02055 Glyco_hydro_30: O-Gly 97.8 0.004 8.7E-08 67.8 21.9 258 240-519 158-475 (496)
28 PF12876 Cellulase-like: Sugar 97.5 0.0001 2.2E-09 61.2 3.8 53 287-339 1-64 (88)
29 PLN03059 beta-galactosidase; P 97.4 0.002 4.4E-08 73.1 13.7 148 187-339 45-222 (840)
30 PF14587 Glyco_hydr_30_2: O-Gl 97.1 0.023 4.9E-07 59.3 16.4 213 225-445 91-359 (384)
31 PRK09525 lacZ beta-D-galactosi 97.1 0.05 1.1E-06 64.6 21.4 212 209-472 383-626 (1027)
32 COG1874 LacA Beta-galactosidas 97.0 0.0021 4.6E-08 71.7 8.7 115 186-304 15-161 (673)
33 PF04862 DUF642: Protein of un 96.7 0.033 7.1E-07 51.6 13.0 113 19-138 44-159 (159)
34 COG3664 XynB Beta-xylosidase [ 96.5 0.024 5.1E-07 59.1 11.0 234 210-469 18-290 (428)
35 COG3934 Endo-beta-mannanase [C 95.6 0.02 4.3E-07 60.6 5.8 223 233-475 65-323 (587)
36 COG5520 O-Glycosyl hydrolase [ 95.0 2.4 5.1E-05 43.8 18.1 247 244-521 111-388 (433)
37 PF13620 CarboxypepD_reg: Carb 95.0 0.074 1.6E-06 42.8 6.3 49 479-528 30-81 (82)
38 PF13204 DUF4038: Protein of u 94.6 0.21 4.6E-06 50.8 9.9 224 187-438 14-279 (289)
39 COG2730 BglC Endoglucanase [Ca 94.1 0.46 1E-05 50.8 11.5 119 208-333 84-219 (407)
40 cd06263 MAM Meprin, A5 protein 93.2 1.9 4E-05 39.2 12.5 106 30-139 41-154 (157)
41 PLN02161 beta-amylase 91.8 0.86 1.9E-05 49.1 9.2 63 204-269 124-196 (531)
42 PLN00197 beta-amylase; Provisi 91.3 1 2.2E-05 49.0 9.2 63 205-270 135-207 (573)
43 PLN02803 beta-amylase 90.9 1.2 2.5E-05 48.4 9.2 63 204-269 114-186 (548)
44 smart00137 MAM Domain in mepri 90.9 4.6 0.0001 37.1 12.2 104 32-139 47-158 (161)
45 PF01373 Glyco_hydro_14: Glyco 90.8 0.12 2.6E-06 54.3 1.8 95 203-304 22-150 (402)
46 PLN03089 hypothetical protein; 90.8 2.7 5.8E-05 44.1 11.5 114 20-141 72-187 (373)
47 PF03425 CBM_11: Carbohydrate 90.3 5.1 0.00011 37.6 12.1 103 35-142 45-172 (178)
48 KOG0626 Beta-glucosidase, lact 90.1 1.1 2.4E-05 48.7 8.2 90 210-305 104-203 (524)
49 KOG0496 Beta-galactosidase [Ca 89.4 0.69 1.5E-05 51.2 6.2 116 187-305 35-176 (649)
50 PF00332 Glyco_hydro_17: Glyco 89.4 0.62 1.3E-05 47.9 5.5 77 385-461 214-305 (310)
51 PF00629 MAM: MAM domain; Int 89.2 7.4 0.00016 34.7 12.1 106 31-139 44-155 (160)
52 PLN03089 hypothetical protein; 89.1 3.7 8.1E-05 43.0 11.0 102 32-141 253-366 (373)
53 PLN02801 beta-amylase 89.0 2.1 4.6E-05 46.2 9.3 63 204-269 44-116 (517)
54 PLN02705 beta-amylase 88.9 2.1 4.4E-05 47.2 9.1 63 204-269 275-347 (681)
55 PLN02905 beta-amylase 88.4 2.4 5.1E-05 46.9 9.2 63 205-270 294-366 (702)
56 PF13715 DUF4480: Domain of un 88.3 1.9 4.1E-05 35.1 6.8 40 479-518 27-67 (88)
57 TIGR01370 cysRS possible cyste 86.3 6.5 0.00014 40.5 10.7 142 273-431 142-296 (315)
58 PF03422 CBM_6: Carbohydrate b 86.3 15 0.00032 31.8 11.7 82 52-138 39-124 (125)
59 PF02638 DUF187: Glycosyl hydr 85.4 16 0.00036 37.5 13.3 157 233-396 68-281 (311)
60 PF02057 Glyco_hydro_59: Glyco 80.4 1.1E+02 0.0024 34.7 23.7 230 239-503 116-369 (669)
61 PF05688 DUF824: Salmonella re 79.4 2.4 5.3E-05 30.7 3.1 24 159-182 15-38 (47)
62 smart00560 LamGL LamG-like jel 78.9 10 0.00022 33.5 7.9 23 98-122 61-83 (133)
63 PF14488 DUF4434: Domain of un 78.2 29 0.00063 32.3 10.9 97 235-341 65-163 (166)
64 PF14299 PP2: Phloem protein 2 78.0 20 0.00043 32.9 9.6 86 53-139 55-153 (154)
65 cd03863 M14_CPD_II The second 77.6 5.9 0.00013 41.9 6.8 48 479-527 324-372 (375)
66 PF15432 Sec-ASP3: Accessory S 76.5 56 0.0012 29.1 12.1 78 53-139 49-126 (128)
67 PF12891 Glyco_hydro_44: Glyco 75.4 7.4 0.00016 38.3 6.3 56 279-337 105-177 (239)
68 cd06245 M14_CPD_III The third 75.1 7.6 0.00017 40.9 6.8 47 480-527 313-360 (363)
69 PF13547 GTA_TIM: GTA TIM-barr 74.2 6.1 0.00013 39.7 5.4 34 397-430 205-265 (299)
70 cd03858 M14_CP_N-E_like Carbox 73.4 11 0.00025 39.6 7.7 50 479-528 324-374 (374)
71 PF08400 phage_tail_N: Prophag 73.3 9.9 0.00022 34.0 6.0 43 479-521 39-83 (134)
72 cd03865 M14_CPE_H Peptidase M1 73.0 8.5 0.00018 41.0 6.5 48 480-528 353-401 (402)
73 PF08308 PEGA: PEGA domain; I 71.8 8.6 0.00019 29.9 4.9 35 493-528 32-67 (71)
74 PF07675 Cleaved_Adhesin: Clea 68.6 96 0.0021 28.7 11.9 79 53-137 69-167 (167)
75 PF01120 Alpha_L_fucos: Alpha- 67.7 42 0.00091 35.0 10.3 92 235-338 138-244 (346)
76 smart00812 Alpha_L_fucos Alpha 65.1 44 0.00095 35.5 9.9 92 235-339 128-233 (384)
77 cd03864 M14_CPN Peptidase M14 65.1 16 0.00035 38.9 6.6 47 479-527 342-390 (392)
78 PF14871 GHL6: Hypothetical gl 62.8 38 0.00082 30.2 7.6 91 202-292 4-124 (132)
79 KOG0626 Beta-glucosidase, lact 61.2 34 0.00073 37.6 8.2 90 384-473 391-508 (524)
80 smart00634 BID_1 Bacterial Ig- 60.9 8.9 0.00019 31.7 3.1 29 158-186 19-47 (92)
81 COG3250 LacZ Beta-galactosidas 57.0 66 0.0014 37.6 10.1 75 209-307 333-410 (808)
82 PF12866 DUF3823: Protein of u 56.9 34 0.00074 33.4 6.8 48 478-526 58-111 (222)
83 COG5309 Exo-beta-1,3-glucanase 55.0 42 0.00091 33.6 7.0 160 236-431 88-272 (305)
84 COG1453 Predicted oxidoreducta 54.8 1.7E+02 0.0036 30.9 11.5 197 211-443 18-253 (391)
85 cd03868 M14_CPD_I The first ca 53.8 37 0.0008 35.8 7.0 48 480-528 323-372 (372)
86 cd03867 M14_CPZ Peptidase M14- 53.6 34 0.00074 36.4 6.8 50 479-528 344-395 (395)
87 cd06547 GH85_ENGase Endo-beta- 51.8 34 0.00075 35.6 6.3 93 239-337 50-146 (339)
88 cd03866 M14_CPM Peptidase M14 49.9 48 0.001 35.1 7.1 39 480-518 324-363 (376)
89 PF15425 DUF4627: Domain of un 49.9 1.3E+02 0.0027 28.4 8.8 80 58-138 87-211 (212)
90 PF03944 Endotoxin_C: delta en 49.0 73 0.0016 28.6 7.3 35 105-140 107-142 (143)
91 COG2040 MHT1 Homocysteine/sele 48.6 58 0.0013 33.0 6.9 47 357-409 137-183 (300)
92 PRK07534 methionine synthase I 48.6 1.1E+02 0.0024 31.9 9.4 83 317-404 85-176 (336)
93 PF04491 Pox_T4_N: Poxvirus T4 48.2 19 0.00042 25.7 2.5 28 6-39 16-43 (46)
94 PF03746 LamB_YcsF: LamB/YcsF 48.0 1E+02 0.0022 30.5 8.5 92 235-338 42-143 (242)
95 PF13620 CarboxypepD_reg: Carb 45.7 22 0.00047 28.1 3.0 27 161-187 2-28 (82)
96 KOG2499 Beta-N-acetylhexosamin 45.6 39 0.00083 36.6 5.5 59 235-293 250-327 (542)
97 COG5016 Pyruvate/oxaloacetate 45.6 2.9E+02 0.0064 29.5 11.7 77 279-375 99-175 (472)
98 PF02574 S-methyl_trans: Homoc 45.5 1.5E+02 0.0032 30.1 9.8 118 316-440 81-220 (305)
99 PF02369 Big_1: Bacterial Ig-l 45.3 16 0.00035 30.7 2.2 23 158-180 24-46 (100)
100 PRK09485 mmuM homocysteine met 43.5 1.3E+02 0.0027 30.9 8.9 50 354-409 140-191 (304)
101 cd00152 PTX Pentraxins are pla 43.0 1.3E+02 0.0028 28.5 8.4 66 56-123 29-113 (201)
102 PF07611 DUF1574: Protein of u 42.1 28 0.00061 36.3 3.8 62 234-303 251-312 (345)
103 PF13385 Laminin_G_3: Concanav 42.0 1.7E+02 0.0037 25.1 8.6 17 57-73 21-37 (157)
104 PF03662 Glyco_hydro_79n: Glyc 41.3 32 0.0007 35.5 4.1 22 231-252 105-126 (319)
105 cd00952 CHBPH_aldolase Trans-o 40.7 3.8E+02 0.0083 27.3 12.0 88 229-340 23-113 (309)
106 smart00606 CBD_IV Cellulose Bi 40.3 2.4E+02 0.0052 24.3 12.0 78 52-136 47-128 (129)
107 PF07210 DUF1416: Protein of u 40.2 87 0.0019 25.7 5.5 66 456-527 16-84 (85)
108 TIGR03066 Gem_osc_para_1 Gemma 40.1 92 0.002 27.0 6.0 67 78-173 38-105 (111)
109 TIGR03079 CH4_NH3mon_ox_B meth 39.2 46 0.001 34.7 4.7 62 40-107 86-150 (399)
110 PRK14042 pyruvate carboxylase 39.1 3.8E+02 0.0083 30.3 12.3 92 279-381 97-208 (596)
111 PF03198 Glyco_hydro_72: Gluca 38.6 3.8E+02 0.0082 27.7 11.1 224 210-471 66-310 (314)
112 cd06563 GH20_chitobiase-like T 38.6 51 0.0011 34.5 5.2 69 224-294 75-167 (357)
113 PF05738 Cna_B: Cna protein B- 38.5 1.7E+02 0.0036 22.2 7.0 42 480-521 20-67 (70)
114 PRK12569 hypothetical protein; 38.0 2E+02 0.0044 28.5 8.8 92 235-338 47-148 (245)
115 cd03869 M14_CPX_like Peptidase 37.8 58 0.0013 34.8 5.5 48 480-527 356-404 (405)
116 PRK09936 hypothetical protein; 37.6 4.6E+02 0.01 26.8 13.7 157 199-376 36-214 (296)
117 PRK12331 oxaloacetate decarbox 36.8 4.8E+02 0.01 28.3 12.4 25 280-304 98-122 (448)
118 PRK14041 oxaloacetate decarbox 36.3 5.8E+02 0.013 27.9 12.9 26 279-304 96-121 (467)
119 cd06564 GH20_DspB_LnbB-like Gl 35.8 43 0.00094 34.5 4.1 65 226-292 73-155 (326)
120 PF13115 YtkA: YtkA-like 35.8 39 0.00085 27.2 3.1 23 160-183 23-45 (86)
121 PRK09875 putative hydrolase; P 35.5 4.9E+02 0.011 26.5 11.7 136 236-391 62-200 (292)
122 TIGR03212 uraD_N-term-dom puta 35.4 3.3E+02 0.0072 27.8 10.4 45 359-404 233-282 (297)
123 TIGR00977 LeuA_rel 2-isopropyl 35.1 6.5E+02 0.014 28.0 13.3 122 237-380 83-208 (526)
124 PRK10076 pyruvate formate lyas 34.4 3.5E+02 0.0077 26.1 9.9 100 315-426 52-155 (213)
125 COG2342 Predicted extracellula 33.6 5.3E+02 0.011 26.2 15.4 208 199-442 32-280 (300)
126 PRK09282 pyruvate carboxylase 33.2 6.4E+02 0.014 28.5 13.0 55 316-381 153-208 (592)
127 PRK12330 oxaloacetate decarbox 33.1 6.1E+02 0.013 28.0 12.5 92 279-381 98-211 (499)
128 COG1182 AcpD Acyl carrier prot 32.8 2.4E+02 0.0051 27.2 8.1 109 277-410 19-129 (202)
129 PF02065 Melibiase: Melibiase; 32.5 6.4E+02 0.014 26.9 13.3 122 208-338 69-233 (394)
130 PF00701 DHDPS: Dihydrodipicol 32.5 3.9E+02 0.0085 26.7 10.4 46 356-403 85-132 (289)
131 PF07364 DUF1485: Protein of u 32.4 1.4E+02 0.0031 30.4 7.1 57 353-411 77-143 (292)
132 COG2160 AraA L-arabinose isome 32.4 1.3E+02 0.0027 32.1 6.6 66 371-442 11-81 (497)
133 PRK02654 putative inner membra 32.2 73 0.0016 33.1 4.9 43 42-86 143-189 (375)
134 TIGR01531 glyc_debranch glycog 31.8 2E+02 0.0044 35.6 9.1 87 237-338 451-545 (1464)
135 PF10794 DUF2606: Protein of u 31.7 1.3E+02 0.0029 26.3 5.6 49 480-528 81-131 (131)
136 PRK12999 pyruvate carboxylase; 31.5 4.2E+02 0.0092 32.5 11.9 25 280-304 629-653 (1146)
137 COG4724 Endo-beta-N-acetylgluc 31.4 1.4E+02 0.0031 31.5 6.8 86 31-123 440-534 (553)
138 cd03459 3,4-PCD Protocatechuat 31.3 44 0.00096 30.8 2.9 24 160-183 17-40 (158)
139 PRK05926 hypothetical protein; 31.1 2.9E+02 0.0062 29.2 9.4 126 314-445 128-266 (370)
140 PRK11354 kil FtsZ inhibitor pr 30.7 1.1E+02 0.0023 24.2 4.4 54 92-174 13-69 (73)
141 cd06599 GH31_glycosidase_Aec37 30.3 1.1E+02 0.0023 31.5 5.9 51 353-403 28-91 (317)
142 PF07680 DoxA: TQO small subun 30.1 2.9E+02 0.0063 24.7 7.8 98 53-173 25-127 (133)
143 PF06483 ChiC: Chitinase C; I 30.0 1.5E+02 0.0032 27.9 6.1 28 53-80 127-154 (180)
144 cd06570 GH20_chitobiase-like_1 30.0 79 0.0017 32.5 4.8 63 230-294 63-149 (311)
145 TIGR01235 pyruv_carbox pyruvat 29.9 5.9E+02 0.013 31.3 12.7 93 278-381 625-743 (1143)
146 COG3485 PcaH Protocatechuate 3 29.8 58 0.0013 31.9 3.6 24 160-183 74-97 (226)
147 PRK08445 hypothetical protein; 29.6 5.4E+02 0.012 26.8 11.1 125 314-444 103-240 (348)
148 PF00775 Dioxygenase_C: Dioxyg 29.4 50 0.0011 31.2 3.0 24 160-183 31-54 (183)
149 cd00945 Aldolase_Class_I Class 29.4 4.2E+02 0.0092 24.1 9.5 77 354-438 65-147 (201)
150 cd00953 KDG_aldolase KDG (2-ke 29.3 5.9E+02 0.013 25.5 12.6 21 230-250 15-35 (279)
151 COG3233 Predicted deacetylase 29.0 4.3E+02 0.0093 25.9 9.1 76 317-403 18-114 (233)
152 TIGR03700 mena_SCO4494 putativ 29.0 6.7E+02 0.015 26.0 12.0 122 314-443 109-245 (351)
153 TIGR01108 oadA oxaloacetate de 29.0 8.5E+02 0.018 27.5 13.0 55 316-381 148-203 (582)
154 PRK10425 DNase TatD; Provision 28.8 3.7E+02 0.008 26.7 9.3 17 389-405 112-128 (258)
155 PRK15315 outer membrane protei 28.5 88 0.0019 38.6 5.3 48 135-182 1001-1051(1865)
156 PLN02489 homocysteine S-methyl 28.4 3.8E+02 0.0081 27.9 9.6 47 354-405 167-215 (335)
157 cd06810 PLPDE_III_ODC_DapDC_li 28.2 3.4E+02 0.0073 28.1 9.4 53 353-409 147-208 (368)
158 cd06604 GH31_glucosidase_II_Ma 28.2 1.1E+02 0.0023 31.8 5.5 49 354-402 24-81 (339)
159 PRK14040 oxaloacetate decarbox 27.9 9.1E+02 0.02 27.3 13.0 92 279-381 98-209 (593)
160 PF00682 HMGL-like: HMGL-like 27.8 5.5E+02 0.012 24.6 11.6 147 235-409 67-218 (237)
161 PF13501 SoxY: Sulfur oxidatio 27.8 2.2E+02 0.0048 24.5 6.5 38 57-96 69-107 (111)
162 KOG2649 Zinc carboxypeptidase 27.7 1E+02 0.0022 33.5 5.1 47 479-526 404-451 (500)
163 PF11141 DUF2914: Protein of u 27.7 32 0.0007 26.8 1.2 34 143-176 28-61 (66)
164 KOG2566 Beta-glucocerebrosidas 27.6 7.8E+02 0.017 26.3 17.1 205 247-470 192-444 (518)
165 PF14686 fn3_3: Polysaccharide 27.3 1.5E+02 0.0033 24.8 5.2 41 481-521 44-90 (95)
166 COG4124 ManB Beta-mannanase [C 27.3 4.2E+02 0.009 27.8 9.3 119 277-410 160-299 (355)
167 cd03463 3,4-PCD_alpha Protocat 27.2 56 0.0012 31.0 2.9 25 159-183 37-61 (185)
168 PF02383 Syja_N: SacI homology 27.2 1.8E+02 0.0039 29.8 6.9 49 249-301 216-271 (319)
169 COG1060 ThiH Thiamine biosynth 26.8 3E+02 0.0065 29.1 8.5 129 313-445 119-258 (370)
170 smart00159 PTX Pentraxin / C-r 26.6 3.2E+02 0.0069 26.0 8.2 16 56-71 29-44 (206)
171 cd06602 GH31_MGAM_SI_GAA This 26.2 96 0.0021 32.2 4.8 52 353-404 23-85 (339)
172 cd06568 GH20_SpHex_like A subg 26.1 97 0.0021 32.1 4.7 31 228-258 68-104 (329)
173 TIGR03711 acc_sec_asp3 accesso 26.0 4.9E+02 0.011 23.4 9.4 54 53-113 60-113 (135)
174 PF07691 PA14: PA14 domain; I 25.7 1.3E+02 0.0028 26.3 5.0 38 101-141 48-85 (145)
175 cd00408 DHDPS-like Dihydrodipi 25.5 6.7E+02 0.014 24.8 12.0 22 229-250 12-33 (281)
176 cd00421 intradiol_dioxygenase 25.4 80 0.0017 28.6 3.5 27 159-185 12-38 (146)
177 PRK08645 bifunctional homocyst 25.0 4.4E+02 0.0095 29.8 10.0 83 317-404 83-171 (612)
178 TIGR02423 protocat_alph protoc 24.9 79 0.0017 30.2 3.5 25 160-184 41-65 (193)
179 cd00954 NAL N-Acetylneuraminic 24.8 7.1E+02 0.015 24.9 15.2 113 277-410 20-138 (288)
180 PF03659 Glyco_hydro_71: Glyco 24.8 3E+02 0.0065 29.3 8.2 76 353-433 16-92 (386)
181 PRK03170 dihydrodipicolinate s 24.7 7.1E+02 0.015 24.9 12.0 19 230-248 17-35 (292)
182 cd06565 GH20_GcnA-like Glycosy 24.2 1.1E+02 0.0024 31.2 4.6 200 229-447 54-281 (301)
183 PF14701 hDGE_amylase: glucano 23.9 1.6E+02 0.0035 31.7 5.9 80 237-332 338-422 (423)
184 PF02784 Orn_Arg_deC_N: Pyrido 23.9 1.1E+02 0.0024 30.0 4.5 71 356-430 143-232 (251)
185 PRK09358 adenosine deaminase; 23.9 7.9E+02 0.017 25.1 14.5 122 271-406 74-205 (340)
186 PF05089 NAGLU: Alpha-N-acetyl 23.7 1.8E+02 0.004 30.2 6.1 125 210-339 69-218 (333)
187 PRK05406 LamB/YcsF family prot 23.5 4.3E+02 0.0093 26.3 8.3 92 235-338 44-145 (246)
188 cd06594 GH31_glucosidase_YihQ 23.5 1.3E+02 0.0028 31.0 5.0 24 353-376 22-45 (317)
189 cd02742 GH20_hexosaminidase Be 23.3 86 0.0019 32.0 3.7 32 227-258 64-101 (303)
190 COG3534 AbfA Alpha-L-arabinofu 23.3 2.1E+02 0.0045 31.0 6.4 140 220-381 95-247 (501)
191 PF11974 MG1: Alpha-2-macroglo 23.2 1.3E+02 0.0028 25.2 4.1 34 160-193 14-48 (97)
192 PRK08508 biotin synthase; Prov 22.9 3.9E+02 0.0084 26.8 8.3 74 316-404 74-156 (279)
193 PLN02746 hydroxymethylglutaryl 22.8 5.7E+02 0.012 26.8 9.6 124 240-381 126-252 (347)
194 cd06830 PLPDE_III_ADC Type III 22.8 1.5E+02 0.0032 31.6 5.5 55 354-410 169-232 (409)
195 TIGR02873 spore_ylxY probable 22.7 2.8E+02 0.0062 27.8 7.2 54 313-380 94-147 (268)
196 cd06562 GH20_HexA_HexB-like Be 22.5 1.2E+02 0.0026 31.7 4.6 63 229-293 64-150 (348)
197 TIGR02102 pullulan_Gpos pullul 22.5 6.4E+02 0.014 30.9 11.0 97 235-341 555-674 (1111)
198 PRK15314 outer membrane protei 22.2 1E+02 0.0022 38.9 4.3 47 135-181 1010-1059(2435)
199 PRK12581 oxaloacetate decarbox 22.2 1E+03 0.022 26.1 11.6 91 280-381 107-217 (468)
200 TIGR00433 bioB biotin syntheta 21.8 8E+02 0.017 24.4 12.0 130 192-337 115-246 (296)
201 COG1540 Uncharacterized protei 21.5 5.9E+02 0.013 25.2 8.6 91 235-337 44-144 (252)
202 PF03644 Glyco_hydro_85: Glyco 21.4 2E+02 0.0043 29.6 5.9 93 239-337 46-141 (311)
203 COG4981 Enoyl reductase domain 21.1 5E+02 0.011 28.9 8.8 40 359-400 113-152 (717)
204 COG0825 AccA Acetyl-CoA carbox 20.9 4.7E+02 0.01 26.8 8.0 131 277-430 36-186 (317)
205 PF11730 DUF3297: Protein of u 20.6 1.1E+02 0.0024 23.9 2.8 25 57-81 34-64 (71)
206 TIGR02660 nifV_homocitr homoci 20.3 9.8E+02 0.021 25.0 11.0 118 238-381 75-196 (365)
207 PF07367 FB_lectin: Fungal fru 20.2 4.8E+02 0.01 23.5 7.1 27 97-123 31-59 (140)
No 1
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=100.00 E-value=1.8e-68 Score=547.27 Aligned_cols=282 Identities=34% Similarity=0.634 Sum_probs=249.9
Q ss_pred eecCCCceEEeecCCccCCh-hHHHHHHhhcCeeccCCcccCcccccCCCccCcchHHHHHHHHHhcCceEEEeeeeeCC
Q 035723 182 QVSKDFPFGSAIASTILGNL-PYQKWFVERFNAAVFENELKWYATEPEQGKINYTIADQMMEFVRSNQLIARGHNIFWED 260 (528)
Q Consensus 182 ~~~~~F~fG~av~~~~~~~~-~y~~~~~~~Fn~vt~eN~~kW~~~Ep~~G~~~~~~~D~~v~~a~~~gi~vrGH~L~W~~ 260 (528)
+.++.|.||+|++...+.+. .|++++.++||.+|+||+|||..+||++|+|+|+.+|++++||+++||+||||+|+||+
T Consensus 5 ~~~~~f~~G~av~~~~~~~~~~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~~~D~~~~~a~~~g~~vrGH~LvW~~ 84 (320)
T PF00331_consen 5 AAKHKFPFGAAVNAQQLEDDPRYRELFAKHFNSVTPENEMKWGSIEPEPGRFNFESADAILDWARENGIKVRGHTLVWHS 84 (320)
T ss_dssp HHCTTTEEEEEEBGGGHTHHHHHHHHHHHH-SEEEESSTTSHHHHESBTTBEE-HHHHHHHHHHHHTT-EEEEEEEEESS
T ss_pred HHhccCCEEEEechhHcCCcHHHHHHHHHhCCeeeeccccchhhhcCCCCccCccchhHHHHHHHhcCcceeeeeEEEcc
Confidence 36899999999998876654 89999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCcccccCC---ChHH---HHHHHHHHHHHHHHHcc--CceeEEEeeccccccc---------ccccccChHHHHHHH
Q 035723 261 PKYTPAWVRNL---TGPA---LQSAVNSRIQSLMNKYK--EEFIHWDVSNEMLHFD---------FYEQRLGHDATLHFY 323 (528)
Q Consensus 261 ~~~~P~W~~~~---~~~~---~~~~~~~~I~~v~~rY~--g~v~~WDVvNE~~~~~---------~~~~~~G~d~~~~af 323 (528)
+ +|+|+..+ ++++ ++++|++||+++++||+ |+|.+||||||+++++ .|.+.+|++|+..||
T Consensus 85 ~--~P~w~~~~~~~~~~~~~~~~~~l~~~I~~v~~~y~~~g~i~~WDVvNE~i~~~~~~~~~r~~~~~~~lG~~yi~~aF 162 (320)
T PF00331_consen 85 Q--TPDWVFNLANGSPDEKEELRARLENHIKTVVTRYKDKGRIYAWDVVNEAIDDDGNPGGLRDSPWYDALGPDYIADAF 162 (320)
T ss_dssp S--S-HHHHTSTTSSBHHHHHHHHHHHHHHHHHHHHTTTTTTESEEEEEES-B-TTSSSSSBCTSHHHHHHTTCHHHHHH
T ss_pred c--ccceeeeccCCCcccHHHHHHHHHHHHHHHHhHhccccceEEEEEeeecccCCCccccccCChhhhcccHhHHHHHH
Confidence 6 99999986 4444 99999999999999999 7999999999999865 589999999999999
Q ss_pred HHHHhhCCCcEEEeecCCcccCCCCcchhHHHHHHHHHHHHhCCceeeEEeeeccCCCC-CHHHHHHHHHHHHhCCCCEE
Q 035723 324 ETAHQSDPLATLFMNEFNVVETCSDENSTVDRYISRLRELKRGGVLMDGIGLESHFTVP-NLPLMRAILDKLATLNLPIW 402 (528)
Q Consensus 324 ~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~v~~l~~~G~~iDgIG~Q~H~~~p-~~~~i~~~L~~~a~~glpI~ 402 (528)
+.||+++|+++||||||++. .+ .|++.|+++|+.|+++|+||||||+|+|+... .++.+++.|++|+++|+||+
T Consensus 163 ~~A~~~~P~a~L~~NDy~~~-~~----~k~~~~~~lv~~l~~~gvpIdgIG~Q~H~~~~~~~~~i~~~l~~~~~~Gl~i~ 237 (320)
T PF00331_consen 163 RAAREADPNAKLFYNDYNIE-SP----AKRDAYLNLVKDLKARGVPIDGIGLQSHFDAGYPPEQIWNALDRFASLGLPIH 237 (320)
T ss_dssp HHHHHHHTTSEEEEEESSTT-ST----HHHHHHHHHHHHHHHTTHCS-EEEEEEEEETTSSHHHHHHHHHHHHTTTSEEE
T ss_pred HHHHHhCCCcEEEecccccc-ch----HHHHHHHHHHHHHHhCCCccceechhhccCCCCCHHHHHHHHHHHHHcCCceE
Confidence 99999999999999999984 32 57899999999999999999999999999652 37899999999999999999
Q ss_pred EEeeecCCCC------ChhHHHHHHHHHHHHHhcCC--CeeEEEEEeeecCCCCCc------ccccCCCCCCchHHHHHH
Q 035723 403 LTEVDISGKL------DKETQAVYLEQVLREGFSHP--SVNGIMLWTALHPNGCYQ------MCLTDNNLQNLPAGNIVD 468 (528)
Q Consensus 403 iTE~dv~~~~------~~~~QA~~~~~~~~~~~s~p--~v~gi~~Wg~~d~~~~~~------~gL~d~d~~pKPAy~~~~ 468 (528)
||||||.... .++.||++|+++++++++|| +|.||++|||+|..+|.. ++|||.|++|||||+++.
T Consensus 238 ITElDv~~~~~~~~~~~~~~qA~~~~~~~~~~~~~~~~~v~git~Wg~~D~~sW~~~~~~~~~~lfd~~~~~Kpa~~~~~ 317 (320)
T PF00331_consen 238 ITELDVRDDDNPPDAEEEEAQAEYYRDFLTACFSHPPAAVEGITWWGFTDGYSWRPDTPPDRPLLFDEDYQPKPAYDAIV 317 (320)
T ss_dssp EEEEEEESSSTTSCHHHHHHHHHHHHHHHHHHHHTTHCTEEEEEESSSBTTGSTTGGHSEG--SSB-TTSBB-HHHHHHH
T ss_pred EEeeeecCCCCCcchHHHHHHHHHHHHHHHHHHhCCccCCCEEEEECCCCCCcccCCCCCCCCeeECCCcCCCHHHHHHH
Confidence 9999999853 16789999999999999999 999999999999988753 699999999999999987
Q ss_pred HH
Q 035723 469 KL 470 (528)
Q Consensus 469 ~l 470 (528)
+.
T Consensus 318 ~a 319 (320)
T PF00331_consen 318 DA 319 (320)
T ss_dssp HH
T ss_pred hc
Confidence 63
No 2
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.1e-63 Score=486.54 Aligned_cols=259 Identities=31% Similarity=0.548 Sum_probs=230.1
Q ss_pred HHHhhcCeeccCCcccCcccccCCCccCcchHHHHHHHHHhcCceEEEeeeeeCCCCCCcccccC--CChHHHHHHHHHH
Q 035723 206 WFVERFNAAVFENELKWYATEPEQGKINYTIADQMMEFVRSNQLIARGHNIFWEDPKYTPAWVRN--LTGPALQSAVNSR 283 (528)
Q Consensus 206 ~~~~~Fn~vt~eN~~kW~~~Ep~~G~~~~~~~D~~v~~a~~~gi~vrGH~L~W~~~~~~P~W~~~--~~~~~~~~~~~~~ 283 (528)
...++||.+|+||+|||..++|++|.|||+.+|++++||++|||++|||+|+||+| .|+|+.. ++++.+.++|++|
T Consensus 53 ~~~re~n~iTpenemKwe~i~p~~G~f~Fe~AD~ia~FAr~h~m~lhGHtLvW~~q--~P~W~~~~e~~~~~~~~~~e~h 130 (345)
T COG3693 53 YYARECNQITPENEMKWEAIEPERGRFNFEAADAIANFARKHNMPLHGHTLVWHSQ--VPDWLFGDELSKEALAKMVEEH 130 (345)
T ss_pred HHHhhhcccccccccccccccCCCCccCccchHHHHHHHHHcCCeeccceeeeccc--CCchhhccccChHHHHHHHHHH
Confidence 34889999999999999999999999999999999999999999999999999998 9999998 7889999999999
Q ss_pred HHHHHHHccCceeEEEeecccccc------ccccc-ccChHHHHHHHHHHHhhCCCcEEEeecCCcccCCCCcchhHHHH
Q 035723 284 IQSLMNKYKEEFIHWDVSNEMLHF------DFYEQ-RLGHDATLHFYETAHQSDPLATLFMNEFNVVETCSDENSTVDRY 356 (528)
Q Consensus 284 I~~v~~rY~g~v~~WDVvNE~~~~------~~~~~-~~G~d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~ 356 (528)
|.+|++||+|++..||||||++++ +.|++ ..|+|||+.||+.||++||+||||||||++ +.. ..|+..+
T Consensus 131 I~tV~~rYkg~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~NDY~i-e~~---~~kr~~~ 206 (345)
T COG3693 131 IKTVVGRYKGSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVINDYSI-EGN---PAKRNYV 206 (345)
T ss_pred HHHHHHhccCceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEeecccc-cCC---hHHHHHH
Confidence 999999999999999999999975 46887 789999999999999999999999999996 332 2588899
Q ss_pred HHHHHHHHhCCceeeEEeeeccCCC--CCHHHHHHHHHHHHhCCCCEEEEeeecCC--CCC------hhHHHHHHHHHHH
Q 035723 357 ISRLRELKRGGVLMDGIGLESHFTV--PNLPLMRAILDKLATLNLPIWLTEVDISG--KLD------KETQAVYLEQVLR 426 (528)
Q Consensus 357 ~~~v~~l~~~G~~iDgIG~Q~H~~~--p~~~~i~~~L~~~a~~glpI~iTE~dv~~--~~~------~~~QA~~~~~~~~ 426 (528)
+++|++|+++|+||||||+|+||+. |+.+.++..|.+++.+|+||+|||||++. +.+ ...|+. ..+.+.
T Consensus 207 ~nlI~~LkekG~pIDgiG~QsH~~~~~~~~~~~~~a~~~~~k~Gl~i~VTELD~~~~~P~~~~p~~~~~~~~~-~~~~f~ 285 (345)
T COG3693 207 LNLIEELKEKGAPIDGIGIQSHFSGDGPSIEKMRAALLKFSKLGLPIYVTELDMSDYTPDSGAPRLYLQKAAS-RAKAFL 285 (345)
T ss_pred HHHHHHHHHCCCCccceeeeeeecCCCCCHHHHHHHHHHHhhcCCCceEEEeeeeccCCCCccHHHHHHHHHH-HHHHHH
Confidence 9999999999999999999999975 78889999999999999999999999987 311 122333 455666
Q ss_pred HHhcCCC-eeEEEEEeeecCCCC----------CcccccCCCCCCchHHHHHHHHH
Q 035723 427 EGFSHPS-VNGIMLWTALHPNGC----------YQMCLTDNNLQNLPAGNIVDKLL 471 (528)
Q Consensus 427 ~~~s~p~-v~gi~~Wg~~d~~~~----------~~~gL~d~d~~pKPAy~~~~~li 471 (528)
.+...|+ |++|++||+.|.++| ..+.|||++++|||||.++.+.+
T Consensus 286 ~~~~~~~~v~~it~WGi~D~ySWl~g~~~~~~~~rPl~~D~n~~pKPa~~aI~e~l 341 (345)
T COG3693 286 LLLLNPNQVKAITFWGITDRYSWLRGRDPRRDGLRPLLFDDNYQPKPAYKAIAEVL 341 (345)
T ss_pred HHHhcccccceEEEeeeccCcccccCCccCcCCCCCcccCCCCCcchHHHHHHHHh
Confidence 6777777 999999999987653 14899999999999999998654
No 3
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=100.00 E-value=4.9e-59 Score=463.70 Aligned_cols=242 Identities=36% Similarity=0.642 Sum_probs=225.1
Q ss_pred ccCcccccCCCccCcchHHHHHHHHHhcCceEEEeeeeeCCCCCCcccccCCChHHHHHHHHHHHHHHHHHccCceeEEE
Q 035723 220 LKWYATEPEQGKINYTIADQMMEFVRSNQLIARGHNIFWEDPKYTPAWVRNLTGPALQSAVNSRIQSLMNKYKEEFIHWD 299 (528)
Q Consensus 220 ~kW~~~Ep~~G~~~~~~~D~~v~~a~~~gi~vrGH~L~W~~~~~~P~W~~~~~~~~~~~~~~~~I~~v~~rY~g~v~~WD 299 (528)
|||..+||++|+|||+.+|++++||+++||++|||+|+||.+ .|+|+..++++++++++.+||+++++||+|+|..||
T Consensus 1 ~kW~~~ep~~G~~n~~~~D~~~~~a~~~gi~v~gH~l~W~~~--~P~W~~~~~~~~~~~~~~~~i~~v~~ry~g~i~~wd 78 (254)
T smart00633 1 MKWDSTEPSRGQFNFSGADAIVNFAKENGIKVRGHTLVWHSQ--TPDWVFNLSKETLLARLENHIKTVVGRYKGKIYAWD 78 (254)
T ss_pred CCcccccCCCCccChHHHHHHHHHHHHCCCEEEEEEEeeccc--CCHhhhcCCHHHHHHHHHHHHHHHHHHhCCcceEEE
Confidence 799999999999999999999999999999999999999986 999999888889999999999999999999999999
Q ss_pred eeccccccc-------ccccccChHHHHHHHHHHHhhCCCcEEEeecCCcccCCCCcchhHHHHHHHHHHHHhCCceeeE
Q 035723 300 VSNEMLHFD-------FYEQRLGHDATLHFYETAHQSDPLATLFMNEFNVVETCSDENSTVDRYISRLRELKRGGVLMDG 372 (528)
Q Consensus 300 VvNE~~~~~-------~~~~~~G~d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~v~~l~~~G~~iDg 372 (528)
|||||++.+ +|.+.+|++|+..+|++||+++|+++|++|||++.. +. .+...|+++++.|+++|+||||
T Consensus 79 V~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Ndy~~~~-~~---~k~~~~~~~v~~l~~~g~~iDg 154 (254)
T smart00633 79 VVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYNDYNTEE-PN---AKRQAIYELVKKLKAKGVPIDG 154 (254)
T ss_pred EeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEeccCCcC-cc---HHHHHHHHHHHHHHHCCCccce
Confidence 999998764 799999999999999999999999999999999853 32 4678999999999999999999
Q ss_pred EeeeccCCC--CCHHHHHHHHHHHHhCCCCEEEEeeecCCCCChhHHHHHHHHHHHHHhcCCCeeEEEEEeeecCCCCC-
Q 035723 373 IGLESHFTV--PNLPLMRAILDKLATLNLPIWLTEVDISGKLDKETQAVYLEQVLREGFSHPSVNGIMLWTALHPNGCY- 449 (528)
Q Consensus 373 IG~Q~H~~~--p~~~~i~~~L~~~a~~glpI~iTE~dv~~~~~~~~QA~~~~~~~~~~~s~p~v~gi~~Wg~~d~~~~~- 449 (528)
||+|+|+.. |+++.+.+.|++|+++|+||+|||+|++...+.+.||++|+++++++++||+|.||++||++|..+|.
T Consensus 155 iGlQ~H~~~~~~~~~~~~~~l~~~~~~g~pi~iTE~dv~~~~~~~~qA~~~~~~l~~~~~~p~v~gi~~Wg~~d~~~W~~ 234 (254)
T smart00633 155 IGLQSHLSLGSPNIAEIRAALDRFASLGLEIQITELDISGYPNPQAQAADYEEVFKACLAHPAVTGVTVWGVTDKYSWLD 234 (254)
T ss_pred eeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEeecCCCCcHHHHHHHHHHHHHHHHcCCCeeEEEEeCCccCCcccC
Confidence 999999864 67889999999999999999999999998645589999999999999999999999999999988764
Q ss_pred --cccccCCCCCCchHHHHH
Q 035723 450 --QMCLTDNNLQNLPAGNIV 467 (528)
Q Consensus 450 --~~gL~d~d~~pKPAy~~~ 467 (528)
.++|||.|++|||||.++
T Consensus 235 ~~~~~L~d~~~~~kpa~~~~ 254 (254)
T smart00633 235 GGAPLLFDANYQPKPAYWAV 254 (254)
T ss_pred CCCceeECCCCCCChhhhcC
Confidence 479999999999999864
No 4
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.58 E-value=3.8e-13 Score=137.48 Aligned_cols=250 Identities=21% Similarity=0.252 Sum_probs=172.2
Q ss_pred HHHHH-hhcCeeccCCcccCcccccCC-CccCcchHHHHHHHHHhcCceEE--Eeee-eeCCC--CCCc-ccccCCChHH
Q 035723 204 QKWFV-ERFNAAVFENELKWYATEPEQ-GKINYTIADQMMEFVRSNQLIAR--GHNI-FWEDP--KYTP-AWVRNLTGPA 275 (528)
Q Consensus 204 ~~~~~-~~Fn~vt~eN~~kW~~~Ep~~-G~~~~~~~D~~v~~a~~~gi~vr--GH~L-~W~~~--~~~P-~W~~~~~~~~ 275 (528)
.++++ .++|+|++. -| ..|.. |..+.+..-++.+-|+++||++. .|-- .|..+ +..| .|. .++.++
T Consensus 30 ~~ilk~~G~N~vRlR---vw--v~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~-~~~~~~ 103 (332)
T PF07745_consen 30 FQILKDHGVNAVRLR---VW--VNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWA-NLSFDQ 103 (332)
T ss_dssp HHHHHHTT--EEEEE---E---SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCT-SSSHHH
T ss_pred HHHHHhcCCCeEEEE---ec--cCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCC-CCCHHH
Confidence 35554 579999998 24 34665 88888888889999999999986 2211 23221 1233 354 357789
Q ss_pred HHHHHHHHHHHHHHHccC---ceeEEEeecccccccccccccCh------HHHHHHHHHHHhhCCCcEEEeecCCcccCC
Q 035723 276 LQSAVNSRIQSLMNKYKE---EFIHWDVSNEMLHFDFYEQRLGH------DATLHFYETAHQSDPLATLFMNEFNVVETC 346 (528)
Q Consensus 276 ~~~~~~~~I~~v~~rY~g---~v~~WDVvNE~~~~~~~~~~~G~------d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~ 346 (528)
+.+++.+|.+.+++..+. .+..+.|=||...+-.|..--.. .++..+++++|+.+|++|+.+.- +.+
T Consensus 104 l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~----~~~ 179 (332)
T PF07745_consen 104 LAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPNIKVMLHL----ANG 179 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSSTSEEEEEE----S-T
T ss_pred HHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEEE----CCC
Confidence 999999999999998764 68899999998765555221121 35788999999999999999973 333
Q ss_pred CCcchhHHHHHHHHHHHHhCCceeeEEeeeccCCC-CCHHHHHHHHHHHH-hCCCCEEEEeeecCCC-------------
Q 035723 347 SDENSTVDRYISRLRELKRGGVLMDGIGLESHFTV-PNLPLMRAILDKLA-TLNLPIWLTEVDISGK------------- 411 (528)
Q Consensus 347 ~~~~~~~~~~~~~v~~l~~~G~~iDgIG~Q~H~~~-p~~~~i~~~L~~~a-~~glpI~iTE~dv~~~------------- 411 (528)
.+ ...+..+.+.|+++|+.+|.||+..|..- ..+..++..|+.++ ++|+||.|+|.+.+..
T Consensus 180 ~~----~~~~~~~f~~l~~~g~d~DviGlSyYP~w~~~l~~l~~~l~~l~~ry~K~V~V~Et~yp~t~~d~D~~~n~~~~ 255 (332)
T PF07745_consen 180 GD----NDLYRWFFDNLKAAGVDFDVIGLSYYPFWHGTLEDLKNNLNDLASRYGKPVMVVETGYPWTLDDGDGTGNIIGA 255 (332)
T ss_dssp TS----HHHHHHHHHHHHHTTGG-SEEEEEE-STTST-HHHHHHHHHHHHHHHT-EEEEEEE---SBS--SSSS--SSSS
T ss_pred Cc----hHHHHHHHHHHHhcCCCcceEEEecCCCCcchHHHHHHHHHHHHHHhCCeeEEEeccccccccccccccccCcc
Confidence 22 34555667888999999999999877543 46888999999885 5799999999998752
Q ss_pred --------CChhHHHHHHHHHHHHHhcCC--CeeEEEEEee-ec----------CCCCCcccccCCCCCCchHHHHH
Q 035723 412 --------LDKETQAVYLEQVLREGFSHP--SVNGIMLWTA-LH----------PNGCYQMCLTDNNLQNLPAGNIV 467 (528)
Q Consensus 412 --------~~~~~QA~~~~~~~~~~~s~p--~v~gi~~Wg~-~d----------~~~~~~~gL~d~d~~pKPAy~~~ 467 (528)
.+.+-|++++++++....+.| ...||++|.- |- +.+|.+.+|||.+.++.|+.+++
T Consensus 256 ~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~~~g~GvfYWeP~w~~~~~~~~~~~g~~w~n~~lFD~~g~~l~sl~~f 332 (332)
T PF07745_consen 256 TSLISGYPATPQGQADFLRDLINAVKNVPNGGGLGVFYWEPAWIPVENGWDWGGGSSWDNQALFDFNGNALPSLDVF 332 (332)
T ss_dssp STGGTTS-SSHHHHHHHHHHHHHHHHTS--TTEEEEEEE-TT-GGGTTHHHHTTTSSSSBGSSB-TTSBB-GGGGHH
T ss_pred ccccCCCCCCHHHHHHHHHHHHHHHHHhccCCeEEEEeeccccccCCcccccCCCCCccccccCCCCCCCchHhhcC
Confidence 146789999999999999985 6999999984 21 12367889999999999998764
No 5
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.45 E-value=4.3e-12 Score=127.31 Aligned_cols=244 Identities=15% Similarity=0.140 Sum_probs=154.0
Q ss_pred eCCCCCccCCcceeeeeecCCCceEEeecCCc--cCChhHHHHHHhhcCeeccCCcccCcccc-cCCCc-c---CcchHH
Q 035723 166 ADGSGDTLQGAEITIEQVSKDFPFGSAIASTI--LGNLPYQKWFVERFNAAVFENELKWYATE-PEQGK-I---NYTIAD 238 (528)
Q Consensus 166 ~d~~g~p~~~a~v~v~~~~~~F~fG~av~~~~--~~~~~y~~~~~~~Fn~vt~eN~~kW~~~E-p~~G~-~---~~~~~D 238 (528)
+|.+|+++. .+|...+... .....+..+-..+||.||+. +-|..++ +.++. + .+...|
T Consensus 1 ~~~~G~~v~-------------~~G~n~~w~~~~~~~~~~~~~~~~G~n~VRi~--v~~~~~~~~~~~~~~~~~~~~~ld 65 (281)
T PF00150_consen 1 VDQNGKPVN-------------WRGFNTHWYNPSITEADFDQLKALGFNTVRIP--VGWEAYQEPNPGYNYDETYLARLD 65 (281)
T ss_dssp ECTTSEBEE-------------EEEEEETTSGGGSHHHHHHHHHHTTESEEEEE--EESTSTSTTSTTTSBTHHHHHHHH
T ss_pred CCCCCCeEE-------------eeeeecccCCCCCHHHHHHHHHHCCCCEEEeC--CCHHHhcCCCCCccccHHHHHHHH
Confidence 466777762 2466655221 11223334445689999998 8897666 55553 2 345689
Q ss_pred HHHHHHHhcCceEEEeeeeeCCCCCCcccccCC----ChHHHHHHHHHHHHHHHHHccC--ceeEEEeecccccccc---
Q 035723 239 QMMEFVRSNQLIARGHNIFWEDPKYTPAWVRNL----TGPALQSAVNSRIQSLMNKYKE--EFIHWDVSNEMLHFDF--- 309 (528)
Q Consensus 239 ~~v~~a~~~gi~vrGH~L~W~~~~~~P~W~~~~----~~~~~~~~~~~~I~~v~~rY~g--~v~~WDVvNE~~~~~~--- 309 (528)
++|++|+++||.|. |.+|. .|.|.... ......+.+.++++.+++||++ .|..||++|||.....
T Consensus 66 ~~v~~a~~~gi~vi---ld~h~---~~~w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~ 139 (281)
T PF00150_consen 66 RIVDAAQAYGIYVI---LDLHN---APGWANGGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDAN 139 (281)
T ss_dssp HHHHHHHHTT-EEE---EEEEE---STTCSSSTSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTT
T ss_pred HHHHHHHhCCCeEE---EEecc---CccccccccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccc
Confidence 99999999999984 55654 47884331 2345677788899999999965 7889999999986432
Q ss_pred cccccCh---HHHHHHHHHHHhhCCCcEEEeecCCcccCCCCcchhHHH-HHHHHHHHHhCCceeeEEeeeccCCCC---
Q 035723 310 YEQRLGH---DATLHFYETAHQSDPLATLFMNEFNVVETCSDENSTVDR-YISRLRELKRGGVLMDGIGLESHFTVP--- 382 (528)
Q Consensus 310 ~~~~~G~---d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~-~~~~v~~l~~~G~~iDgIG~Q~H~~~p--- 382 (528)
|...... +++..+++.+|+++|+..+++.+.+. .. .... ... +=......+.+.+|.+....
T Consensus 140 w~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~~~~-~~------~~~~~~~~----~P~~~~~~~~~~~H~Y~~~~~~~ 208 (281)
T PF00150_consen 140 WNAQNPADWQDWYQRAIDAIRAADPNHLIIVGGGGW-GA------DPDGAAAD----NPNDADNNDVYSFHFYDPYDFSD 208 (281)
T ss_dssp TSHHHTHHHHHHHHHHHHHHHHTTSSSEEEEEEHHH-HT------BHHHHHHH----STTTTTTSEEEEEEEETTTCHHT
T ss_pred cccccchhhhhHHHHHHHHHHhcCCcceeecCCCcc-cc------ccchhhhc----CcccccCceeEEeeEeCCCCcCC
Confidence 4111122 46788999999999999999988332 11 0111 111 10112356777777665321
Q ss_pred --C----------HHHHHHHHHHHHhCCCCEEEEeeecCCCCChhHHHHHHHHHHHHHhcCCCeeEEEEEeeec
Q 035723 383 --N----------LPLMRAILDKLATLNLPIWLTEVDISGKLDKETQAVYLEQVLREGFSHPSVNGIMLWTALH 444 (528)
Q Consensus 383 --~----------~~~i~~~L~~~a~~glpI~iTE~dv~~~~~~~~QA~~~~~~~~~~~s~p~v~gi~~Wg~~d 444 (528)
. ...+...+..+...|+||+|+|+++.... .....++...++..+.++ -.|.++|.+..
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~pv~~gE~G~~~~~-~~~~~~~~~~~~~~~~~~--~~g~~~W~~~~ 279 (281)
T PF00150_consen 209 QWNPGNWGDASALESSFRAALNWAKKNGKPVVVGEFGWSNND-GNGSTDYADAWLDYLEQN--GIGWIYWSWKP 279 (281)
T ss_dssp TTSTCSHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSTTT-SCHHHHHHHHHHHHHHHT--TCEEEECEESS
T ss_pred ccccccchhhhHHHHHHHHHHHHHHHcCCeEEEeCcCCcCCC-CCcCHHHHHHHHHHHHHC--CCeEEEEecCC
Confidence 1 12355566666788999999999998532 213334444456666665 44778888753
No 6
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=99.41 E-value=3.2e-12 Score=138.92 Aligned_cols=246 Identities=18% Similarity=0.155 Sum_probs=132.7
Q ss_pred hhcCeeccCCcc--cCccccc--CCC--ccCcchHHHHHHHHHhcCceEEEeeeeeCCCCCCcccccC-----------C
Q 035723 209 ERFNAAVFENEL--KWYATEP--EQG--KINYTIADQMMEFVRSNQLIARGHNIFWEDPKYTPAWVRN-----------L 271 (528)
Q Consensus 209 ~~Fn~vt~eN~~--kW~~~Ep--~~G--~~~~~~~D~~v~~a~~~gi~vrGH~L~W~~~~~~P~W~~~-----------~ 271 (528)
-+|..|++.|-| .+..... ..| .|||+..|+++|+..++||++--. |. ..|.++.. .
T Consensus 52 ~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~ve-l~-----f~p~~~~~~~~~~~~~~~~~ 125 (486)
T PF01229_consen 52 LGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVE-LG-----FMPMALASGYQTVFWYKGNI 125 (486)
T ss_dssp S--SEEEES-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEE-E------SB-GGGBSS--EETTTTEE-
T ss_pred cCceEEEEEeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEE-EE-----echhhhcCCCCccccccCCc
Confidence 369999998876 4443322 233 299999999999999999998421 21 24444321 2
Q ss_pred ChHHHHHHHHHHHHHHHHHccC-----ce--eEEEeecccccccccccccChHH---HHHHHHHHHhhCCCcEEEeecCC
Q 035723 272 TGPALQSAVNSRIQSLMNKYKE-----EF--IHWDVSNEMLHFDFYEQRLGHDA---TLHFYETAHQSDPLATLFMNEFN 341 (528)
Q Consensus 272 ~~~~~~~~~~~~I~~v~~rY~g-----~v--~~WDVvNE~~~~~~~~~~~G~d~---~~~af~~Ar~~dP~a~L~~Ndy~ 341 (528)
+|+...+.|.+.|++++.||.+ .| ..|||||||....+|....-.+| ...+++++|+++|++++--- .
T Consensus 126 ~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~p~~~vGGp--~ 203 (486)
T PF01229_consen 126 SPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVDPELKVGGP--A 203 (486)
T ss_dssp S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH-TTSEEEEE--E
T ss_pred CCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhCCCCcccCc--c
Confidence 3444456666666666655543 23 46799999987776653322344 57789999999999996422 1
Q ss_pred cccCCCCcchhHHHHHHHHHHHHhCCceeeEEeeeccCCC-----C-----CHHHHHH-------HHHHHH---hCCCCE
Q 035723 342 VVETCSDENSTVDRYISRLRELKRGGVLMDGIGLESHFTV-----P-----NLPLMRA-------ILDKLA---TLNLPI 401 (528)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~v~~l~~~G~~iDgIG~Q~H~~~-----p-----~~~~i~~-------~L~~~a---~~glpI 401 (528)
.. .. .......| ++.+.++++|+|-|.+|.+-.. + .+..++. ..+.+. ..++|+
T Consensus 204 ~~-~~--~~~~~~~~---l~~~~~~~~~~DfiS~H~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~~ 277 (486)
T PF01229_consen 204 FA-WA--YDEWCEDF---LEFCKGNNCPLDFISFHSYGTDSAEDINENMYERIEDSRRLFPELKETRPIINDEADPNLPL 277 (486)
T ss_dssp EE-TT---THHHHHH---HHHHHHCT---SEEEEEEE-BESESE-SS-EEEEB--HHHHHHHHHHHHHHHHTSSSTT--E
T ss_pred cc-cc--HHHHHHHH---HHHHhcCCCCCCEEEEEecccccccccchhHHhhhhhHHHHHHHHHHHHHHHhhccCCCCce
Confidence 11 00 11233444 4566778899999999866431 1 1112222 222232 235789
Q ss_pred EEEeeecCCCC-----ChhHHHHHHHH-HHHHHhcCCCeeEEEEEeeecCC-----C----CCcccccCCCCCCchHHHH
Q 035723 402 WLTEVDISGKL-----DKETQAVYLEQ-VLREGFSHPSVNGIMLWTALHPN-----G----CYQMCLTDNNLQNLPAGNI 466 (528)
Q Consensus 402 ~iTE~dv~~~~-----~~~~QA~~~~~-~~~~~~s~p~v~gi~~Wg~~d~~-----~----~~~~gL~d~d~~pKPAy~~ 466 (528)
++||...+... +-..+|.++-+ ++... .-.+.++..|.+.|-- . ...+||+..+.-+||+|.+
T Consensus 278 ~~tE~n~~~~~~~~~~dt~~~aA~i~k~lL~~~--~~~l~~~sywt~sD~Fee~~~~~~pf~ggfGLlt~~gI~KPa~~A 355 (486)
T PF01229_consen 278 YITEWNASISPRNPQHDTCFKAAYIAKNLLSND--GAFLDSFSYWTFSDRFEENGTPRKPFHGGFGLLTKLGIPKPAYYA 355 (486)
T ss_dssp EEEEEES-SSTT-GGGGSHHHHHHHHH-HHHHG--GGT-SEEEES-SBS---TTSS-SSSSSS-S-SEECCCEE-HHHHH
T ss_pred eecccccccCCCcchhccccchhhHHHHHHHhh--hhhhhhhhccchhhhhhccCCCCCceecchhhhhccCCCchHHHH
Confidence 99998887631 22345666544 33221 1248899999998631 1 1368999999999999999
Q ss_pred HHHH
Q 035723 467 VDKL 470 (528)
Q Consensus 467 ~~~l 470 (528)
+.-|
T Consensus 356 ~~~L 359 (486)
T PF01229_consen 356 FQLL 359 (486)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8654
No 7
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.41 E-value=1.6e-11 Score=129.35 Aligned_cols=247 Identities=17% Similarity=0.259 Sum_probs=141.5
Q ss_pred HHhhcCeeccCCcccCcccccCCCccCcchHHHHHHHHHhcCceEEEeeeeeCCCCCCcccccC----------------
Q 035723 207 FVERFNAAVFENELKWYATEPEQGKINYTIADQMMEFVRSNQLIARGHNIFWEDPKYTPAWVRN---------------- 270 (528)
Q Consensus 207 ~~~~Fn~vt~eN~~kW~~~Ep~~G~~~~~~~D~~v~~a~~~gi~vrGH~L~W~~~~~~P~W~~~---------------- 270 (528)
-..+||.|++. .+.|..+||++|+|+|+..|++++.|.++||+|-- .... ...|.|+..
T Consensus 20 ~~~G~n~vri~-~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL---~~~~-~~~P~Wl~~~~Pe~~~~~~~g~~~~ 94 (374)
T PF02449_consen 20 KEAGFNTVRIG-EFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVIL---GTPT-AAPPAWLYDKYPEILPVDADGRRRG 94 (374)
T ss_dssp HHHT-SEEEE--CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEE---EECT-TTS-HHHHCCSGCCC-B-TTTSBEE
T ss_pred HHcCCCEEEEE-EechhhccCCCCeeecHHHHHHHHHHHhccCeEEE---Eecc-cccccchhhhcccccccCCCCCcCc
Confidence 34689999963 49999999999999999999999999999999863 2322 247889753
Q ss_pred --------CChHHHHHHHHHHHHHHHHHccC--ceeEEEeeccccc-c------------------------------cc
Q 035723 271 --------LTGPALQSAVNSRIQSLMNKYKE--EFIHWDVSNEMLH-F------------------------------DF 309 (528)
Q Consensus 271 --------~~~~~~~~~~~~~I~~v~~rY~g--~v~~WDVvNE~~~-~------------------------------~~ 309 (528)
.+.+..++.+.++++++++||++ .|..|+|.||+.. . .+
T Consensus 95 ~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~~~~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ 174 (374)
T PF02449_consen 95 FGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYHRCYSPACQAAFRQWLKEKYGTIEALNRAWGTAF 174 (374)
T ss_dssp CCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCTS--SHHHHHHHHHHHHHHHSSHHHHHHHHTTTG
T ss_pred cCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcCcCCChHHHHHHHHHHHHHhCCHHHHHHHHcCCc
Confidence 12356889999999999999997 5899999999743 1 12
Q ss_pred -------ccccc---------Ch---------------HHHHHHHHHHHhhCCCcEEEeecCCc-ccCCCCcchhHHHHH
Q 035723 310 -------YEQRL---------GH---------------DATLHFYETAHQSDPLATLFMNEFNV-VETCSDENSTVDRYI 357 (528)
Q Consensus 310 -------~~~~~---------G~---------------d~~~~af~~Ar~~dP~a~L~~Ndy~~-~~~~~~~~~~~~~~~ 357 (528)
|.++. .+ +++....+.+|+.+|+..+..|-+.. .. ..++.
T Consensus 175 ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ir~~~p~~~vt~n~~~~~~~--------~~d~~ 246 (374)
T PF02449_consen 175 WSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADIIREYDPDHPVTTNFMGSWFN--------GIDYF 246 (374)
T ss_dssp GG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-EEE-EE-TT-----------SS-HH
T ss_pred ccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCccccccC--------cCCHH
Confidence 22211 01 12334567888999999988886553 11 11222
Q ss_pred HHHHHHHhCCceeeEEeeeccCC-----CC-CHHHHHHHHHHH--HhCCCCEEEEeeecCCC----CChhHHHHHHHHHH
Q 035723 358 SRLRELKRGGVLMDGIGLESHFT-----VP-NLPLMRAILDKL--ATLNLPIWLTEVDISGK----LDKETQAVYLEQVL 425 (528)
Q Consensus 358 ~~v~~l~~~G~~iDgIG~Q~H~~-----~p-~~~~i~~~L~~~--a~~glpI~iTE~dv~~~----~~~~~QA~~~~~~~ 425 (528)
++ .-.+|.+|...+.. .. ....+.-..+.. ...|.|.+++|.-.... .........++...
T Consensus 247 ~~-------a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~kpf~v~E~~~g~~~~~~~~~~~~pg~~~~~~ 319 (374)
T PF02449_consen 247 KW-------AKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSLAKGKPFWVMEQQPGPVNWRPYNRPPRPGELRLWS 319 (374)
T ss_dssp HH-------GGGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHHTTT--EEEEEE--S--SSSSS-----TTHHHHHH
T ss_pred HH-------HhhCCcceeccccCcccCCCCCCHHHHHHHHHHHHhhcCCCceEeecCCCCCCCCccCCCCCCCCHHHHHH
Confidence 21 12568888876654 11 112222223322 25699999999966521 11111122334444
Q ss_pred HHHhcCCCeeEEEEEeeecCC-C-C-CcccccCCCC-CCchHHHHHHHHHHHh
Q 035723 426 REGFSHPSVNGIMLWTALHPN-G-C-YQMCLTDNNL-QNLPAGNIVDKLLKEW 474 (528)
Q Consensus 426 ~~~~s~p~v~gi~~Wg~~d~~-~-~-~~~gL~d~d~-~pKPAy~~~~~li~ew 474 (528)
-.+++| +..||.+|.+.... | + ...||++.|+ +|.+-|..+.++-++.
T Consensus 320 ~~~~A~-Ga~~i~~~~wr~~~~g~E~~~~g~~~~dg~~~~~~~~e~~~~~~~l 371 (374)
T PF02449_consen 320 WQAIAH-GADGILFWQWRQSRFGAEQFHGGLVDHDGREPTRRYREVAQLGREL 371 (374)
T ss_dssp HHHHHT-T-S-EEEC-SB--SSSTTTTS--SB-TTS--B-HHHHHHHHHHHHH
T ss_pred HHHHHH-hCCeeEeeeccCCCCCchhhhcccCCccCCCCCcHHHHHHHHHHHH
Confidence 455666 89999999986543 3 3 4789999999 9999999999887653
No 8
>TIGR03356 BGL beta-galactosidase.
Probab=99.35 E-value=8.8e-11 Score=125.37 Aligned_cols=244 Identities=15% Similarity=0.152 Sum_probs=161.4
Q ss_pred HhhcCeeccCCcccCcccccC-CCccC---cchHHHHHHHHHhcCceEEEeeeeeCCCCCCcccccC---CChHHHHHHH
Q 035723 208 VERFNAAVFENELKWYATEPE-QGKIN---YTIADQMMEFVRSNQLIARGHNIFWEDPKYTPAWVRN---LTGPALQSAV 280 (528)
Q Consensus 208 ~~~Fn~vt~eN~~kW~~~Ep~-~G~~~---~~~~D~~v~~a~~~gi~vrGH~L~W~~~~~~P~W~~~---~~~~~~~~~~ 280 (528)
.-+||..++. +.|..++|. +|.+| ++..|++++.|+++||.+.- +| .|-. .|.|+.. ...++..+.+
T Consensus 65 ~~G~~~~R~s--i~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~piv-tL-~Hfd--~P~~l~~~gGw~~~~~~~~f 138 (427)
T TIGR03356 65 ELGVDAYRFS--IAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFV-TL-YHWD--LPQALEDRGGWLNRDTAEWF 138 (427)
T ss_pred HcCCCeEEcc--cchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEE-ee-ccCC--ccHHHHhcCCCCChHHHHHH
Confidence 3589999998 999999999 78887 45678999999999999863 33 3322 8999762 3345678899
Q ss_pred HHHHHHHHHHccCceeEEEeecccccccc-------cccc-cC-h-HH---------HHHHHHHHHhhCCCcEEEeecCC
Q 035723 281 NSRIQSLMNKYKEEFIHWDVSNEMLHFDF-------YEQR-LG-H-DA---------TLHFYETAHQSDPLATLFMNEFN 341 (528)
Q Consensus 281 ~~~I~~v~~rY~g~v~~WDVvNE~~~~~~-------~~~~-~G-~-d~---------~~~af~~Ar~~dP~a~L~~Ndy~ 341 (528)
.+|.+.+++||+++|..|..+|||..... +... .. . .| .+.|+++.|+..|++++-+.-..
T Consensus 139 ~~ya~~~~~~~~d~v~~w~t~NEp~~~~~~~y~~G~~~P~~~~~~~~~~~~hnll~Aha~A~~~~~~~~~~~~IGi~~~~ 218 (427)
T TIGR03356 139 AEYAAVVAERLGDRVKHWITLNEPWCSAFLGYGLGVHAPGLRDLRAALQAAHHLLLAHGLAVQALRANGPGAQVGIVLNL 218 (427)
T ss_pred HHHHHHHHHHhCCcCCEEEEecCcceecccchhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 99999999999999999999999974321 1100 01 1 11 15688889999999887553222
Q ss_pred cccCCCCcch--h-----HHHHHH--------------HHHH--------------HHhCCceeeEEeeeccCCC-----
Q 035723 342 VVETCSDENS--T-----VDRYIS--------------RLRE--------------LKRGGVLMDGIGLESHFTV----- 381 (528)
Q Consensus 342 ~~~~~~~~~~--~-----~~~~~~--------------~v~~--------------l~~~G~~iDgIG~Q~H~~~----- 381 (528)
..-.|..... . ...+.. .+++ ++ +| .+|=||++.+...
T Consensus 219 ~~~~P~~~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l~~~p~~~~~d~~~l-~~-~~DFiGiNyY~~~~v~~~ 296 (427)
T TIGR03356 219 TPVYPASDSPEDVAAARRADGLLNRWFLDPLLKGRYPEDLLEYLGDAPFVQDGDLETI-AQ-PLDFLGINYYTRSVVAAD 296 (427)
T ss_pred CeeeeCCCCHHHHHHHHHHHHHHhhhhhHHHhCCCCCHHHHHHhccCCCCCHHHHHHh-cC-CCCEEEEeccccceeccC
Confidence 1112211000 0 011100 0011 11 23 5699999865421
Q ss_pred --------------C--------CHHHHHHHHHHHH-hCCC-CEEEEeeecCCC-------CChhHHHHHHHHHHHHHhc
Q 035723 382 --------------P--------NLPLMRAILDKLA-TLNL-PIWLTEVDISGK-------LDKETQAVYLEQVLREGFS 430 (528)
Q Consensus 382 --------------p--------~~~~i~~~L~~~a-~~gl-pI~iTE~dv~~~-------~~~~~QA~~~~~~~~~~~s 430 (528)
| .+..++..|..+. ..++ ||.|||-++... ..+..+.+||++.+..+..
T Consensus 297 ~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~L~~~~~rY~~ppi~ITENG~~~~d~~~~g~~~D~~Ri~yl~~hl~~~~~ 376 (427)
T TIGR03356 297 PGTGAGFVEVPEGVPKTAMGWEVYPEGLYDLLLRLKEDYPGPPIYITENGAAFDDEVTDGEVHDPERIAYLRDHLAALAR 376 (427)
T ss_pred CCCCCCccccCCCCCcCCCCCeechHHHHHHHHHHHHhcCCCCEEEeCCCCCcCCCCcCCCcCCHHHHHHHHHHHHHHHH
Confidence 1 1356889998764 5786 799999999742 1355677888877765542
Q ss_pred ----CCCeeEEEEEeeecCCCC-----CcccccCCCCC
Q 035723 431 ----HPSVNGIMLWTALHPNGC-----YQMCLTDNNLQ 459 (528)
Q Consensus 431 ----~p~v~gi~~Wg~~d~~~~-----~~~gL~d~d~~ 459 (528)
-=.|.|.+.|.+.|.-.| ..+||+.=|+.
T Consensus 377 Ai~dGv~v~GY~~Wsl~Dn~ew~~gy~~rfGl~~VD~~ 414 (427)
T TIGR03356 377 AIEEGVDVRGYFVWSLLDNFEWAEGYSKRFGLVHVDYE 414 (427)
T ss_pred HHHCCCCEEEEEecccccccchhcccccccceEEECCC
Confidence 235999999999886432 36888866654
No 9
>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus. These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....
Probab=99.28 E-value=9.3e-11 Score=103.76 Aligned_cols=91 Identities=24% Similarity=0.433 Sum_probs=76.4
Q ss_pred CCceEEEEecCCCCCCCceEEE--EEeCCCEEEEEEEEEEccCCCcEEEEEEEEeCC-eeEEeee-EEEeCCCEEEEEeE
Q 035723 31 PENFSSIAHFSTGFYTPAFILH--NLTPGTIYCFSIWLKIEGANSAHVRASLKTENS-VYNCVGS-AAAKQGCWSFLKGG 106 (528)
Q Consensus 31 g~~~sl~vt~Rt~~w~G~~~~~--~l~~G~~Y~vSawVk~~~g~~~~~~vt~~~~~g-~y~~~~~-~~v~~~~Wt~l~g~ 106 (528)
.|.++|.|++|++.|+++.+.+ .|++|++|.||+|||..++ ..+.+.+...++ .|..+.. ....+++|++++++
T Consensus 33 ~g~~~l~v~~~~~~~~~~~~~~~~~l~~G~~Y~~s~~vk~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~s~~ 110 (131)
T PF02018_consen 33 SGNYSLKVSNRSATWDGQSQQQTISLKPGKTYTVSFWVKADSG--GTVSVSLRDEDGSPYNWYTGQTVTITGEWTKYSGT 110 (131)
T ss_dssp SSSEEEEEECCSSGCGEEEEEEEEEE-TTSEEEEEEEEEESSS--EEEEEEEEESSTTTEEEEEEEEEEETSSEEEEEEE
T ss_pred CCeEEEEEECCCCCccccceecceEecCCCEEEEEEEEEeCCC--CEEEEEEEEcCCCCcEEEEEEEEECCCCcEEEEEE
Confidence 4567899999999999998765 8999999999999999997 677777777666 5655543 77778999999999
Q ss_pred EEecCCCCeeEEEEEcC
Q 035723 107 FVLDSPSNLSILFFQNS 123 (528)
Q Consensus 107 ~t~~~~~~~~~ly~E~~ 123 (528)
||++.+.+.+.|||+.+
T Consensus 111 ft~~~~~~~~~l~~~~~ 127 (131)
T PF02018_consen 111 FTAPSDDDTVRLYFEIG 127 (131)
T ss_dssp EEEESSCEEEEEEEEES
T ss_pred EEECCCCceEEEEEEec
Confidence 99997778999999984
No 10
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=99.20 E-value=9.9e-10 Score=108.53 Aligned_cols=165 Identities=19% Similarity=0.144 Sum_probs=113.0
Q ss_pred cCceeEEEeecccccccccccccChH-HHHHHHHHHHh-hCCCcEEEeecCCcccCCCCcchhHHHHHHHHHHHHh---C
Q 035723 292 KEEFIHWDVSNEMLHFDFYEQRLGHD-ATLHFYETAHQ-SDPLATLFMNEFNVVETCSDENSTVDRYISRLRELKR---G 366 (528)
Q Consensus 292 ~g~v~~WDVvNE~~~~~~~~~~~G~d-~~~~af~~Ar~-~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~v~~l~~---~ 366 (528)
+..+.++-.+|||+... ...+.++ ++..+-+.... .++.++|.--........ .. ....+ ++++++ .
T Consensus 63 ~~~~~~ll~fNEPD~~~--qsn~~p~~aa~~w~~~~~~~~~~~~~l~sPa~~~~~~~-~~--~g~~W---l~~F~~~~~~ 134 (239)
T PF11790_consen 63 HPGSKHLLGFNEPDLPG--QSNMSPEEAAALWKQYMNPLRSPGVKLGSPAVAFTNGG-TP--GGLDW---LSQFLSACAR 134 (239)
T ss_pred ccCccceeeecCCCCCC--CCCCCHHHHHHHHHHHHhHhhcCCcEEECCeecccCCC-CC--CccHH---HHHHHHhccc
Confidence 67799999999998644 3344444 33333332222 148888875554221110 00 01123 233333 4
Q ss_pred CceeeEEeeeccCCCCCHHHHHHHHHHH-HhCCCCEEEEeeecCC---CCChhHHHHHHHHHHHHHhcCCCeeEEEEEee
Q 035723 367 GVLMDGIGLESHFTVPNLPLMRAILDKL-ATLNLPIWLTEVDISG---KLDKETQAVYLEQVLREGFSHPSVNGIMLWTA 442 (528)
Q Consensus 367 G~~iDgIG~Q~H~~~p~~~~i~~~L~~~-a~~glpI~iTE~dv~~---~~~~~~QA~~~~~~~~~~~s~p~v~gi~~Wg~ 442 (528)
|..+|.|.+|.+ ..++..+...|+.+ ...|+||||||+.+.. ..+++.|++++++++..+-+.|.|+++.|+++
T Consensus 135 ~~~~D~iavH~Y--~~~~~~~~~~i~~~~~~~~kPIWITEf~~~~~~~~~~~~~~~~fl~~~~~~ld~~~~VeryawF~~ 212 (239)
T PF11790_consen 135 GCRVDFIAVHWY--GGDADDFKDYIDDLHNRYGKPIWITEFGCWNGGSQGSDEQQASFLRQALPWLDSQPYVERYAWFGF 212 (239)
T ss_pred CCCccEEEEecC--CcCHHHHHHHHHHHHHHhCCCEEEEeecccCCCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEeccc
Confidence 789999999877 43467788888887 6789999999999742 35788999999999999999999999999996
Q ss_pred ecCC-C-CCcccccCCCCCCchHHHH
Q 035723 443 LHPN-G-CYQMCLTDNNLQNLPAGNI 466 (528)
Q Consensus 443 ~d~~-~-~~~~gL~d~d~~pKPAy~~ 466 (528)
.+.. + .....|++.+.++.|+++.
T Consensus 213 ~~~~~~~~~~~~L~~~~G~lt~lG~~ 238 (239)
T PF11790_consen 213 MNDGSGVNPNSALLDADGSLTPLGKA 238 (239)
T ss_pred ccccCCCccccccccCCCCcChhhhh
Confidence 4432 2 3456789989999998865
No 11
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=99.17 E-value=4.3e-10 Score=121.31 Aligned_cols=257 Identities=15% Similarity=0.206 Sum_probs=162.0
Q ss_pred hhcCeeccCCcccCcccccC--CCccCcc---hHHHHHHHHHhcCceEEEeeeeeCCCCCCcccccC---CChHHHHHHH
Q 035723 209 ERFNAAVFENELKWYATEPE--QGKINYT---IADQMMEFVRSNQLIARGHNIFWEDPKYTPAWVRN---LTGPALQSAV 280 (528)
Q Consensus 209 ~~Fn~vt~eN~~kW~~~Ep~--~G~~~~~---~~D~~v~~a~~~gi~vrGH~L~W~~~~~~P~W~~~---~~~~~~~~~~ 280 (528)
-++|.-++. +.|..++|. +|.+|-+ -.+++++-++++||++.- || +|-. +|.|+.. ...++..+.+
T Consensus 70 lg~~~yRfs--i~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~v-tL-~H~~--~P~~l~~~ggw~~~~~~~~F 143 (455)
T PF00232_consen 70 LGVNAYRFS--ISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIV-TL-YHFD--LPLWLEDYGGWLNRETVDWF 143 (455)
T ss_dssp HT-SEEEEE----HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEE-EE-ESS----BHHHHHHTGGGSTHHHHHH
T ss_pred hccceeeee--cchhheeecccccccCHhHhhhhHHHHHHHHhhccceee-ee-eecc--cccceeecccccCHHHHHHH
Confidence 468999987 999999999 6998844 468899999999999873 33 4432 8999864 2345678899
Q ss_pred HHHHHHHHHHccCceeEEEeecccccccc---ccc--ccC----hH-H---------HHHHHHHHHhhCCCcEEEe-ecC
Q 035723 281 NSRIQSLMNKYKEEFIHWDVSNEMLHFDF---YEQ--RLG----HD-A---------TLHFYETAHQSDPLATLFM-NEF 340 (528)
Q Consensus 281 ~~~I~~v~~rY~g~v~~WDVvNE~~~~~~---~~~--~~G----~d-~---------~~~af~~Ar~~dP~a~L~~-Ndy 340 (528)
.+|++.++++|+++|..|=..|||..... ... ..| .. + -..|+++.|+..|++++-+ ..+
T Consensus 144 ~~Ya~~~~~~~gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~~~~IGi~~~~ 223 (455)
T PF00232_consen 144 ARYAEFVFERFGDRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYPDGKIGIALNF 223 (455)
T ss_dssp HHHHHHHHHHHTTTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTCTSEEEEEEEE
T ss_pred HHHHHHHHHHhCCCcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhcccceEEeccccc
Confidence 99999999999999999999999974311 100 111 11 1 2578899999999999854 222
Q ss_pred CcccCCCCcchhH--------HHHH-----H----------HHHHHHhC--------------CceeeEEeeeccCCC--
Q 035723 341 NVVETCSDENSTV--------DRYI-----S----------RLRELKRG--------------GVLMDGIGLESHFTV-- 381 (528)
Q Consensus 341 ~~~~~~~~~~~~~--------~~~~-----~----------~v~~l~~~--------------G~~iDgIG~Q~H~~~-- 381 (528)
... .|.+..... ..+. + +...+..+ ..++|=||+..+...
T Consensus 224 ~~~-~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v 302 (455)
T PF00232_consen 224 SPF-YPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYV 302 (455)
T ss_dssp EEE-EESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEE
T ss_pred ccc-CCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhccccceee
Confidence 221 111111000 1111 0 11111112 126899999866320
Q ss_pred ---C-------------------------------CHHHHHHHHHHHH-hCC-CCEEEEeeecCCCCC-------hhHHH
Q 035723 382 ---P-------------------------------NLPLMRAILDKLA-TLN-LPIWLTEVDISGKLD-------KETQA 418 (528)
Q Consensus 382 ---p-------------------------------~~~~i~~~L~~~a-~~g-lpI~iTE~dv~~~~~-------~~~QA 418 (528)
+ .+..++..|..+. ..+ +||.|||-++..... +..+-
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~P~Gl~~~L~~l~~~Y~~~pI~ITENG~~~~~~~~~~~v~D~~Ri 382 (455)
T PF00232_consen 303 RADPNPSSPPSYDSDAPFGQPYNPGGPTTDWGWEIYPEGLRDVLRYLKDRYGNPPIYITENGIGDPDEVDDGKVDDDYRI 382 (455)
T ss_dssp EESSSSTSSTTHEEEESEEEECETSSEBCTTSTBBETHHHHHHHHHHHHHHTSSEEEEEEE---EETTCTTSHBSHHHHH
T ss_pred ccCccccccccccCCccccccccccccccccCcccccchHhhhhhhhccccCCCcEEEecccccccccccccCcCcHHHH
Confidence 1 1456899999884 556 999999999987421 45666
Q ss_pred HHHHHHHHHHh----cCCCeeEEEEEeeecCCCC-----CcccccCCC------CCCchHHHHHHHHHH
Q 035723 419 VYLEQVLREGF----SHPSVNGIMLWTALHPNGC-----YQMCLTDNN------LQNLPAGNIVDKLLK 472 (528)
Q Consensus 419 ~~~~~~~~~~~----s~p~v~gi~~Wg~~d~~~~-----~~~gL~d~d------~~pKPAy~~~~~li~ 472 (528)
+|+++.+..+. .--.|.|.+.|.+.|.-.| ..+||+.=| .+||+++..++++|+
T Consensus 383 ~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~Ew~~Gy~~rfGl~~VD~~~~~~R~pK~S~~~y~~~i~ 451 (455)
T PF00232_consen 383 DYLQDHLNQVLKAIEDGVNVRGYFAWSLLDNFEWAEGYKKRFGLVYVDFFDTLKRTPKKSAYWYKDFIR 451 (455)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEEETSB---BGGGGGGSE--SEEEETTTTTEEEEBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccCCCeeeEeeeccccccccccCccCccCceEEcCCCCcCeeeccHHHHHHHHHH
Confidence 66666554433 3456999999999987432 368888777 679999999999985
No 12
>PLN02998 beta-glucosidase
Probab=99.13 E-value=1.1e-08 Score=110.77 Aligned_cols=255 Identities=14% Similarity=0.206 Sum_probs=163.8
Q ss_pred hcCeeccCCcccCcccccC-CCccCcch---HHHHHHHHHhcCceEEEeeeeeCCCCCCcccccC----CChHHHHHHHH
Q 035723 210 RFNAAVFENELKWYATEPE-QGKINYTI---ADQMMEFVRSNQLIARGHNIFWEDPKYTPAWVRN----LTGPALQSAVN 281 (528)
Q Consensus 210 ~Fn~vt~eN~~kW~~~Ep~-~G~~~~~~---~D~~v~~a~~~gi~vrGH~L~W~~~~~~P~W~~~----~~~~~~~~~~~ 281 (528)
++|.-++. +.|.+|+|+ .|.+|-+. .+++++-+.++||+..- || +|=. +|.|+.. +..++..+.+.
T Consensus 95 G~~~YRfS--IsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~V-TL-~H~d--lP~~L~~~yGGW~n~~~v~~F~ 168 (497)
T PLN02998 95 GLEAYRFS--ISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHV-TL-HHFD--LPQALEDEYGGWLSQEIVRDFT 168 (497)
T ss_pred CCCeEEee--ccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEE-Ee-cCCC--CCHHHHHhhCCcCCchHHHHHH
Confidence 68888887 999999997 45555433 57899999999999863 43 4433 8999864 23456788999
Q ss_pred HHHHHHHHHccCceeEEEeeccccccc-------cccccc-----------Ch----HH---------HHHHHHHHHhh-
Q 035723 282 SRIQSLMNKYKEEFIHWDVSNEMLHFD-------FYEQRL-----------GH----DA---------TLHFYETAHQS- 329 (528)
Q Consensus 282 ~~I~~v~~rY~g~v~~WDVvNE~~~~~-------~~~~~~-----------G~----d~---------~~~af~~Ar~~- 329 (528)
+|.+.+++||++||..|=..|||.... .+.... |. -| -+.|++..|+.
T Consensus 169 ~YA~~~~~~fgdrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~~~~~ 248 (497)
T PLN02998 169 AYADTCFKEFGDRVSHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIAVHNMLLAHASATILYKQQY 248 (497)
T ss_pred HHHHHHHHHhcCcCCEEEEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999997431 111000 00 11 14567777775
Q ss_pred --CCCcEE--EeecCCcccCCCCcch--h-----HHHHHH--------------HHHHHHh--------------CCcee
Q 035723 330 --DPLATL--FMNEFNVVETCSDENS--T-----VDRYIS--------------RLRELKR--------------GGVLM 370 (528)
Q Consensus 330 --dP~a~L--~~Ndy~~~~~~~~~~~--~-----~~~~~~--------------~v~~l~~--------------~G~~i 370 (528)
.|+.++ .+|.. .. .|..... . ...|.. .+++.+. +| ++
T Consensus 249 ~~~~~g~IGi~~~~~-~~-~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~t~~d~~~i~~-~~ 325 (497)
T PLN02998 249 KYKQHGSVGISVYTY-GA-VPLTNSVKDKQATARVNDFYIGWILHPLVFGDYPETMKTNVGSRLPAFTEEESEQVKG-AF 325 (497)
T ss_pred ccCCCCcEEEEEeCC-ee-ecCCCCHHHHHHHHHHHHHHhhhhhhHHhCCCcCHHHHHHHhcCCCCCCHHHHHHhcC-CC
Confidence 666544 33432 11 1211000 0 010110 0011110 22 56
Q ss_pred eEEeeeccCCC----------C---------------------------CHHHHHHHHHHHH-hCCC-CEEEEeeecCCC
Q 035723 371 DGIGLESHFTV----------P---------------------------NLPLMRAILDKLA-TLNL-PIWLTEVDISGK 411 (528)
Q Consensus 371 DgIG~Q~H~~~----------p---------------------------~~~~i~~~L~~~a-~~gl-pI~iTE~dv~~~ 411 (528)
|=||++-+... + .+..++..|..+. ..++ ||.|||-++...
T Consensus 326 DFlGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~ 405 (497)
T PLN02998 326 DFVGVINYMALYVKDNSSSLKPNLQDFNTDIAVEMTLVGNTSIENEYANTPWSLQQILLYVKETYGNPPVYILENGQMTP 405 (497)
T ss_pred CEEEEchhcCcccccCCCcCCCCccccccccccccccCCCcCCCCCCEEChHHHHHHHHHHHHHcCCCCEEEeCCCCccC
Confidence 88888733210 0 1345788888774 5677 699999999753
Q ss_pred ----CChhHHHHHHHHHHHHHh----cCCCeeEEEEEeeecCCCC-----CcccccCCCCC-------CchHHHHHHHHH
Q 035723 412 ----LDKETQAVYLEQVLREGF----SHPSVNGIMLWTALHPNGC-----YQMCLTDNNLQ-------NLPAGNIVDKLL 471 (528)
Q Consensus 412 ----~~~~~QA~~~~~~~~~~~----s~p~v~gi~~Wg~~d~~~~-----~~~gL~d~d~~-------pKPAy~~~~~li 471 (528)
..+..+.+|+++.+..+. .--.|.|.+.|++.|.-.| ..+||+.=|+. ||+++..++++|
T Consensus 406 ~~g~v~D~~Ri~Yl~~hl~~~~kAi~dGv~V~GY~~WSl~DnfEW~~Gy~~RfGLv~VD~~~~~~~R~pK~S~~wy~~ii 485 (497)
T PLN02998 406 HSSSLVDTTRVKYLSSYIKAVLHSLRKGSDVKGYFQWSLMDVFELFGGYERSFGLLYVDFKDPSLKRSPKLSAHWYSSFL 485 (497)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceecccHHHHHHHHH
Confidence 235567777777766544 2245999999999886332 36888865554 899999999999
Q ss_pred HH
Q 035723 472 KE 473 (528)
Q Consensus 472 ~e 473 (528)
+.
T Consensus 486 ~~ 487 (497)
T PLN02998 486 KG 487 (497)
T ss_pred hc
Confidence 53
No 13
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.11 E-value=1.4e-08 Score=113.47 Aligned_cols=228 Identities=16% Similarity=0.155 Sum_probs=150.9
Q ss_pred hhcCeeccCCcccCcccccCCCccCcchHHHHHHHHHhcCceEEEeeeeeC-----C------CCCCcccccCCChHHHH
Q 035723 209 ERFNAAVFENELKWYATEPEQGKINYTIADQMMEFVRSNQLIARGHNIFWE-----D------PKYTPAWVRNLTGPALQ 277 (528)
Q Consensus 209 ~~Fn~vt~eN~~kW~~~Ep~~G~~~~~~~D~~v~~a~~~gi~vrGH~L~W~-----~------~~~~P~W~~~~~~~~~~ 277 (528)
.+||.++.. .+ ....++++.|.+.||-|---+-.|. . ....|.|-.....++.+
T Consensus 325 ~G~N~vR~s--h~-------------p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (604)
T PRK10150 325 IGANSFRTS--HY-------------PYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPKETYSEEAVNGETQ 389 (604)
T ss_pred CCCCEEEec--cC-------------CCCHHHHHHHHhcCcEEEEecccccccccccccccccccccccccccccchhHH
Confidence 479999873 11 1235789999999997764332221 1 00112232211224567
Q ss_pred HHHHHHHHHHHHHccC--ceeEEEeecccccccccccccChHHHHHHHHHHHhhCCCcEEEeecCCcccCCCCcchhHHH
Q 035723 278 SAVNSRIQSLMNKYKE--EFIHWDVSNEMLHFDFYEQRLGHDATLHFYETAHQSDPLATLFMNEFNVVETCSDENSTVDR 355 (528)
Q Consensus 278 ~~~~~~I~~v~~rY~g--~v~~WDVvNE~~~~~~~~~~~G~d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~ 355 (528)
+..++.+++++.|++. .|..|-+-||+.... ....++++...+++|+.||.-.+-+..... ..+. ...
T Consensus 390 ~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~~~----~~~~~~~~~l~~~~k~~DptR~vt~~~~~~-~~~~-----~~~ 459 (604)
T PRK10150 390 QAHLQAIRELIARDKNHPSVVMWSIANEPASRE----QGAREYFAPLAELTRKLDPTRPVTCVNVMF-ATPD-----TDT 459 (604)
T ss_pred HHHHHHHHHHHHhccCCceEEEEeeccCCCccc----hhHHHHHHHHHHHHHhhCCCCceEEEeccc-CCcc-----ccc
Confidence 7888999999999987 799999999974321 112367788999999999984443322110 0000 000
Q ss_pred HHHHHHHHHhCCceeeEEeeeccCC----CCCHHH----HHHHHHHHH-hCCCCEEEEeeecCC----------CCChhH
Q 035723 356 YISRLRELKRGGVLMDGIGLESHFT----VPNLPL----MRAILDKLA-TLNLPIWLTEVDISG----------KLDKET 416 (528)
Q Consensus 356 ~~~~v~~l~~~G~~iDgIG~Q~H~~----~p~~~~----i~~~L~~~a-~~glpI~iTE~dv~~----------~~~~~~ 416 (528)
+ ....|.+|+..+++ ..+... +...|+++. ..++|+.+||++..+ ..+|+.
T Consensus 460 ~----------~~~~Dv~~~N~Y~~wy~~~~~~~~~~~~~~~~~~~~~~~~~kP~~isEyg~~~~~~~h~~~~~~~~ee~ 529 (604)
T PRK10150 460 V----------SDLVDVLCLNRYYGWYVDSGDLETAEKVLEKELLAWQEKLHKPIIITEYGADTLAGLHSMYDDMWSEEY 529 (604)
T ss_pred c----------cCcccEEEEcccceecCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEccCCccccccccCCCCCCCHHH
Confidence 0 12579999876553 223322 334444443 238999999998543 246999
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEEEeeecCCC--------CCcccccCCCCCCchHHHHHHHHH
Q 035723 417 QAVYLEQVLREGFSHPSVNGIMLWTALHPNG--------CYQMCLTDNNLQNLPAGNIVDKLL 471 (528)
Q Consensus 417 QA~~~~~~~~~~~s~p~v~gi~~Wg~~d~~~--------~~~~gL~d~d~~pKPAy~~~~~li 471 (528)
|+++++..++++.++|.+.|-.+|.+.|-.+ -...||++.|.+|||++..++.+.
T Consensus 530 q~~~~~~~~~~~~~~p~~~G~~iW~~~D~~~~~g~~~~~g~~~Gl~~~dr~~k~~~~~~k~~~ 592 (604)
T PRK10150 530 QCAFLDMYHRVFDRVPAVVGEQVWNFADFATSQGILRVGGNKKGIFTRDRQPKSAAFLLKKRW 592 (604)
T ss_pred HHHHHHHHHHHHhcCCceEEEEEEeeeccCCCCCCcccCCCcceeEcCCCCChHHHHHHHHHh
Confidence 9999999999999999999999999998321 136799999999999997665553
No 14
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=99.10 E-value=2.2e-08 Score=108.24 Aligned_cols=257 Identities=13% Similarity=0.122 Sum_probs=165.2
Q ss_pred hhcCeeccCCcccCcccccC-CCccCcc---hHHHHHHHHHhcCceEEEeeeeeCCCCCCcccccC---CChHHHHHHHH
Q 035723 209 ERFNAAVFENELKWYATEPE-QGKINYT---IADQMMEFVRSNQLIARGHNIFWEDPKYTPAWVRN---LTGPALQSAVN 281 (528)
Q Consensus 209 ~~Fn~vt~eN~~kW~~~Ep~-~G~~~~~---~~D~~v~~a~~~gi~vrGH~L~W~~~~~~P~W~~~---~~~~~~~~~~~ 281 (528)
-++|+-++. +.|.+|+|. .|.+|-+ -.+++++.|.++||+..- || +|-. +|.|+.. ...++..+.+.
T Consensus 66 lG~~~yRfS--IsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~V-TL-~H~d--lP~~L~~~GGW~n~~~v~~F~ 139 (469)
T PRK13511 66 FGVNGIRIS--IAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFV-TL-HHFD--TPEALHSNGDWLNRENIDHFV 139 (469)
T ss_pred hCCCEEEee--ccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEE-Ee-cCCC--CcHHHHHcCCCCCHHHHHHHH
Confidence 369999987 999999997 3555543 358899999999999863 43 4433 8999964 33457788999
Q ss_pred HHHHHHHHHccCceeEEEeeccccccc-------ccccc-cCh--H-H---------HHHHHHHHHhhCCCcEEEee-cC
Q 035723 282 SRIQSLMNKYKEEFIHWDVSNEMLHFD-------FYEQR-LGH--D-A---------TLHFYETAHQSDPLATLFMN-EF 340 (528)
Q Consensus 282 ~~I~~v~~rY~g~v~~WDVvNE~~~~~-------~~~~~-~G~--d-~---------~~~af~~Ar~~dP~a~L~~N-dy 340 (528)
+|.+.+++||++ |..|=-+|||.... .+... -+. . | -+.|+++.|+..|+.++-+. .+
T Consensus 140 ~YA~~~~~~fgd-Vk~W~T~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~g~IGi~~~~ 218 (469)
T PRK13511 140 RYAEFCFEEFPE-VKYWTTFNEIGPIGDGQYLVGKFPPGIKYDLAKVFQSHHNMMVAHARAVKLFKDKGYKGEIGVVHAL 218 (469)
T ss_pred HHHHHHHHHhCC-CCEEEEccchhhhhhcchhhcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 999999999999 99999999997432 11110 011 1 1 15678888888887665332 22
Q ss_pred CcccCCCC---cchhH-----HHH------------------HHHHH-----------------HHHhCC-ceeeEEeee
Q 035723 341 NVVETCSD---ENSTV-----DRY------------------ISRLR-----------------ELKRGG-VLMDGIGLE 376 (528)
Q Consensus 341 ~~~~~~~~---~~~~~-----~~~------------------~~~v~-----------------~l~~~G-~~iDgIG~Q 376 (528)
... .|.. ..... ..+ .+.++ +++... .++|=||++
T Consensus 219 ~~~-~P~~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~~~~~~~~~~~~l~~t~~d~~~ik~~~~~~DFiGiN 297 (469)
T PRK13511 219 PTK-YPIDPDNPEDVRAAELEDIIHNKFILDATYLGYYSEETMEGVNHILEANGGSLDIRDEDFEILKAAKDLNDFLGIN 297 (469)
T ss_pred ceE-eeCCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHHhhhhcCCCCCCCHHHHHHHhcCCCCCCEEEec
Confidence 121 1211 00000 001 11111 011111 257888887
Q ss_pred ccCCC--------------------------------------C--------CHHHHHHHHHHHH-hCCC--CEEEEeee
Q 035723 377 SHFTV--------------------------------------P--------NLPLMRAILDKLA-TLNL--PIWLTEVD 407 (528)
Q Consensus 377 ~H~~~--------------------------------------p--------~~~~i~~~L~~~a-~~gl--pI~iTE~d 407 (528)
-+... | .+..++..|..+. ..+. ||.|||-+
T Consensus 298 yYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~l~~~~~~Y~~~~pi~ITENG 377 (469)
T PRK13511 298 YYMSDWMRAYDGETEIIHNGTGEKGSSKYQLKGVGERVKPPDVPTTDWDWIIYPQGLYDQLMRIKKDYPNYKKIYITENG 377 (469)
T ss_pred hhhcceeecCCCccccccCCCCccccccccccCccccccCCCCCcCCCCCeECcHHHHHHHHHHHHHcCCCCCEEEecCC
Confidence 55210 0 1345778888774 4665 79999999
Q ss_pred cCCC--------CChhHHHHHHHHHHHHHh----cCCCeeEEEEEeeecCCCC-----CcccccCCCC-----CCchHHH
Q 035723 408 ISGK--------LDKETQAVYLEQVLREGF----SHPSVNGIMLWTALHPNGC-----YQMCLTDNNL-----QNLPAGN 465 (528)
Q Consensus 408 v~~~--------~~~~~QA~~~~~~~~~~~----s~p~v~gi~~Wg~~d~~~~-----~~~gL~d~d~-----~pKPAy~ 465 (528)
+... ..+..+.+||++.+..+. +--.|.|.+.|.+.|.-.| ..+||+.=|+ .||+++.
T Consensus 378 ~~~~d~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~DnfEW~~Gy~~RfGl~~VD~~~~~R~pK~S~~ 457 (469)
T PRK13511 378 LGYKDEFVDGKTVDDDKRIDYVKQHLEVISDAISDGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFETQERYPKKSAY 457 (469)
T ss_pred cCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecccccccchhcCccCccceEEECCCcCccccccHHH
Confidence 9732 224567777777766544 2245999999999987432 3578886655 4899999
Q ss_pred HHHHHHHH
Q 035723 466 IVDKLLKE 473 (528)
Q Consensus 466 ~~~~li~e 473 (528)
.++++++.
T Consensus 458 wy~~~i~~ 465 (469)
T PRK13511 458 WYKKLAET 465 (469)
T ss_pred HHHHHHHh
Confidence 99999853
No 15
>PLN02814 beta-glucosidase
Probab=99.03 E-value=3.9e-08 Score=106.79 Aligned_cols=257 Identities=13% Similarity=0.205 Sum_probs=164.2
Q ss_pred hhcCeeccCCcccCcccccC-CCccCcch---HHHHHHHHHhcCceEEEeeeeeCCCCCCcccccC----CChHHHHHHH
Q 035723 209 ERFNAAVFENELKWYATEPE-QGKINYTI---ADQMMEFVRSNQLIARGHNIFWEDPKYTPAWVRN----LTGPALQSAV 280 (528)
Q Consensus 209 ~~Fn~vt~eN~~kW~~~Ep~-~G~~~~~~---~D~~v~~a~~~gi~vrGH~L~W~~~~~~P~W~~~----~~~~~~~~~~ 280 (528)
-++|+-++. +.|.+|+|+ +|.+|-+. .+++++-|.++||++.- || +|=. +|.|+.. ....+..+.+
T Consensus 89 lG~~ayRfS--IsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~V-TL-~H~d--lP~~L~~~yGGW~n~~~i~~F 162 (504)
T PLN02814 89 MGLESFRFS--ISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHV-TL-YHYD--LPQSLEDEYGGWINRKIIEDF 162 (504)
T ss_pred cCCCEEEEe--ccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEE-Ee-cCCC--CCHHHHHhcCCcCChhHHHHH
Confidence 368999987 999999996 56666543 57899999999999863 44 3433 8999864 2356788899
Q ss_pred HHHHHHHHHHccCceeEEEeecccccccc--cc-c-cc-------------C---hH-H---------HHHHHHHHHhh-
Q 035723 281 NSRIQSLMNKYKEEFIHWDVSNEMLHFDF--YE-Q-RL-------------G---HD-A---------TLHFYETAHQS- 329 (528)
Q Consensus 281 ~~~I~~v~~rY~g~v~~WDVvNE~~~~~~--~~-~-~~-------------G---~d-~---------~~~af~~Ar~~- 329 (528)
.+|.+.+++||+++|..|=..|||..... +. . .. + .+ | -+.|+++.|+.
T Consensus 163 ~~YA~~~f~~fgdrVk~WiT~NEP~~~~~~gy~~G~~pg~~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~ 242 (504)
T PLN02814 163 TAFADVCFREFGEDVKLWTTINEATIFAIGSYGQGIRYGHCSPNKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKY 242 (504)
T ss_pred HHHHHHHHHHhCCcCCEEEeccccchhhhcccccCcCCCCCCcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999973210 00 0 00 0 01 1 14567777764
Q ss_pred --CCCcEEEee-cCCcccCCCCcch--h-----HHHHH-----H---------HHHHHHh--------------CCceee
Q 035723 330 --DPLATLFMN-EFNVVETCSDENS--T-----VDRYI-----S---------RLRELKR--------------GGVLMD 371 (528)
Q Consensus 330 --dP~a~L~~N-dy~~~~~~~~~~~--~-----~~~~~-----~---------~v~~l~~--------------~G~~iD 371 (528)
.|+.++-+- .+... .|..... . ...+. + .+++.+. +| ++|
T Consensus 243 ~~~~~g~IGi~~~~~~~-~P~~~~~~D~~Aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~ikg-~~D 320 (504)
T PLN02814 243 KSKQRGSIGLSIFAFGL-SPYTNSKDDEIATQRAKAFLYGWMLKPLVFGDYPDEMKRTLGSRLPVFSEEESEQVKG-SSD 320 (504)
T ss_pred ccCCCCeEEEEEeCcee-ecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcC-CCC
Confidence 677655332 22221 1211000 0 01011 0 0011110 12 457
Q ss_pred EEeeeccCCC------------------------------C--------CHHHHHHHHHHHH-hCCC-CEEEEeeecCCC
Q 035723 372 GIGLESHFTV------------------------------P--------NLPLMRAILDKLA-TLNL-PIWLTEVDISGK 411 (528)
Q Consensus 372 gIG~Q~H~~~------------------------------p--------~~~~i~~~L~~~a-~~gl-pI~iTE~dv~~~ 411 (528)
=||++.+... + .+..++..|..+. ..+. ||.|||-++...
T Consensus 321 FiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gWei~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~ 400 (504)
T PLN02814 321 FVGIIHYTTFYVTNRPAPSIFPSMNEGFFTDMGAYIISAGNSSFFEFDATPWGLEGILEHIKQSYNNPPIYILENGMPMK 400 (504)
T ss_pred EEEEcccccceeccCCCCCcccccCCCcccccccccCCCCCcCCCCCeECcHHHHHHHHHHHHhcCCCCEEEECCCCCCC
Confidence 7776644210 0 2456888888874 4666 799999999742
Q ss_pred ----CChhHHHHHHHHHHHHHh----cCCCeeEEEEEeeecCCCC-----CcccccCCCCC-------CchHHHHHHHHH
Q 035723 412 ----LDKETQAVYLEQVLREGF----SHPSVNGIMLWTALHPNGC-----YQMCLTDNNLQ-------NLPAGNIVDKLL 471 (528)
Q Consensus 412 ----~~~~~QA~~~~~~~~~~~----s~p~v~gi~~Wg~~d~~~~-----~~~gL~d~d~~-------pKPAy~~~~~li 471 (528)
..+..+.+|+++.+..+. .--.|.|.+.|++.|.-.| ..+||+-=|+. ||+++..+++++
T Consensus 401 ~~g~i~D~~Ri~Yl~~hl~~l~~Ai~dGv~V~GY~~WSllDnfEW~~Gy~~RfGLvyVD~~~~~~~R~pK~S~~wy~~~i 480 (504)
T PLN02814 401 HDSTLQDTPRVEFIQAYIGAVLNAIKNGSDTRGYFVWSMIDLYELLGGYTTSFGMYYVNFSDPGRKRSPKLSASWYTGFL 480 (504)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceeeecHHHHHHHHH
Confidence 235667778887775443 2245999999999886332 36788755443 899999999998
Q ss_pred HH
Q 035723 472 KE 473 (528)
Q Consensus 472 ~e 473 (528)
+.
T Consensus 481 ~~ 482 (504)
T PLN02814 481 NG 482 (504)
T ss_pred hc
Confidence 54
No 16
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=99.00 E-value=6.8e-08 Score=104.50 Aligned_cols=257 Identities=13% Similarity=0.137 Sum_probs=165.7
Q ss_pred hhcCeeccCCcccCcccccC--CCccCcc---hHHHHHHHHHhcCceEEEeeeeeCCCCCCcccccC----CChHHHHHH
Q 035723 209 ERFNAAVFENELKWYATEPE--QGKINYT---IADQMMEFVRSNQLIARGHNIFWEDPKYTPAWVRN----LTGPALQSA 279 (528)
Q Consensus 209 ~~Fn~vt~eN~~kW~~~Ep~--~G~~~~~---~~D~~v~~a~~~gi~vrGH~L~W~~~~~~P~W~~~----~~~~~~~~~ 279 (528)
-.+|+-++. +.|.+|+|. .|.+|-+ -.+++++-|.++||+..- || +|=. +|.|+.. ...++..+.
T Consensus 85 lG~~aYRfS--IsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~V-TL-~H~d--lP~~L~~~~GGW~n~~~v~~ 158 (478)
T PRK09593 85 MGFKTYRMS--IAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLV-TI-THFD--CPMHLIEEYGGWRNRKMVGF 158 (478)
T ss_pred cCCCEEEEe--cchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE-Ee-cccC--CCHHHHhhcCCCCChHHHHH
Confidence 369999987 999999997 4455543 358899999999998863 33 4433 8999863 344567889
Q ss_pred HHHHHHHHHHHccCceeEEEeeccccccc---cc-cc---ccCh-----HH---------HHHHHHHHHhhCCCcEEEee
Q 035723 280 VNSRIQSLMNKYKEEFIHWDVSNEMLHFD---FY-EQ---RLGH-----DA---------TLHFYETAHQSDPLATLFMN 338 (528)
Q Consensus 280 ~~~~I~~v~~rY~g~v~~WDVvNE~~~~~---~~-~~---~~G~-----d~---------~~~af~~Ar~~dP~a~L~~N 338 (528)
+.+|.+.+++||+++|..|=-+|||.... ++ .. ..|. -| -+.|+++.|+..|+.++-+.
T Consensus 159 F~~YA~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~~~~~~~~a~h~~llAHa~A~~~~~~~~~~g~VGi~ 238 (478)
T PRK09593 159 YERLCRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGENKEQVKYQAAHHELVASAIATKIAHEVDPENKVGCM 238 (478)
T ss_pred HHHHHHHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 99999999999999999999999997421 11 00 1121 11 14678888888888766332
Q ss_pred -cCCcccCCCCcc--hhHHH----------------------HHHHHH-------------HHHhCCceeeEEeeeccCC
Q 035723 339 -EFNVVETCSDEN--STVDR----------------------YISRLR-------------ELKRGGVLMDGIGLESHFT 380 (528)
Q Consensus 339 -dy~~~~~~~~~~--~~~~~----------------------~~~~v~-------------~l~~~G~~iDgIG~Q~H~~ 380 (528)
.+... .|.... ....+ +.+.+. +++.+| ++|=||+.-+..
T Consensus 239 ~~~~~~-~P~~~~~~D~~aa~~~~~~~~~fld~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~ik~g-~~DFlGiNyYt~ 316 (478)
T PRK09593 239 LAAGQY-YPNTCHPEDVWAAMKEDRENYFFIDVQARGEYPNYAKKRFEREGITIEMTEEDLELLKEN-TVDFISFSYYSS 316 (478)
T ss_pred EeCCee-EeCCCCHHHHHHHHHHHHHhhhhhhhhhCCCccHHHHHHHHhcCCCCCCCHHHHHHHhcC-CCCEEEEecccC
Confidence 12111 121100 00000 011111 111123 568888764321
Q ss_pred C----------------------C-----------CHHHHHHHHHHH-HhCCCCEEEEeeecCCC--------CChhHHH
Q 035723 381 V----------------------P-----------NLPLMRAILDKL-ATLNLPIWLTEVDISGK--------LDKETQA 418 (528)
Q Consensus 381 ~----------------------p-----------~~~~i~~~L~~~-a~~glpI~iTE~dv~~~--------~~~~~QA 418 (528)
. | .+..++..|..+ ...++||.|||-++... ..+..+-
T Consensus 317 ~~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~gw~i~P~Gl~~~l~~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri 396 (478)
T PRK09593 317 RVASGDPKVNEKTAGNIFASLKNPYLKASEWGWQIDPLGLRITLNTIWDRYQKPMFIVENGLGAVDKPDENGYVEDDYRI 396 (478)
T ss_pred cccccCCCCCCCCCCCccccccCCCcccCCCCCEECHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCccCCHHHH
Confidence 0 1 145688888877 46789999999998742 1244566
Q ss_pred HHHHHHHHHHh-----cCCCeeEEEEEeeecCCCC------CcccccCCCCC----------CchHHHHHHHHHHH
Q 035723 419 VYLEQVLREGF-----SHPSVNGIMLWTALHPNGC------YQMCLTDNNLQ----------NLPAGNIVDKLLKE 473 (528)
Q Consensus 419 ~~~~~~~~~~~-----s~p~v~gi~~Wg~~d~~~~------~~~gL~d~d~~----------pKPAy~~~~~li~e 473 (528)
+|++..+..+. .--.|.|.+.|.+.|.-.| ..+||+.=|+. ||+++..++++++.
T Consensus 397 ~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn~EW~~G~y~~RfGl~~VD~~~~~~~~~~R~pK~S~~wy~~ii~~ 472 (478)
T PRK09593 397 DYLAAHIKAMRDAINEDGVELLGYTTWGCIDLVSAGTGEMKKRYGFIYVDRDNEGKGTLKRSKKKSFDWYKKVIAS 472 (478)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeeccchHhhcccCCCccCeeceEEECCCCCCCcccceecccHHHHHHHHHHh
Confidence 67776665443 2235999999999886322 35888865554 89999999999963
No 17
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=99.00 E-value=1.3e-07 Score=102.22 Aligned_cols=262 Identities=16% Similarity=0.149 Sum_probs=167.7
Q ss_pred HHHH-hhcCeeccCCcccCcccccC--CCccCc---chHHHHHHHHHhcCceEEEeeeeeCCCCCCcccccC----CChH
Q 035723 205 KWFV-ERFNAAVFENELKWYATEPE--QGKINY---TIADQMMEFVRSNQLIARGHNIFWEDPKYTPAWVRN----LTGP 274 (528)
Q Consensus 205 ~~~~-~~Fn~vt~eN~~kW~~~Ep~--~G~~~~---~~~D~~v~~a~~~gi~vrGH~L~W~~~~~~P~W~~~----~~~~ 274 (528)
++++ -+||+-++. +.|.+|+|. .|.+|- +-.+++++.|.++||++. -|| +|-. +|.|+.. +..+
T Consensus 76 ~Lm~elG~~~yRfS--IsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~-vTL-~H~d--lP~~L~~~yGGW~n~ 149 (477)
T PRK15014 76 KLFAEMGFKCFRTS--IAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPV-ITL-SHFE--MPLHLVQQYGSWTNR 149 (477)
T ss_pred HHHHHcCCCEEEec--ccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEE-EEe-eCCC--CCHHHHHhcCCCCCh
Confidence 3444 479999998 999999997 344553 346899999999999986 344 4433 8999853 3456
Q ss_pred HHHHHHHHHHHHHHHHccCceeEEEeecccccc--------cccc-cc---cC----h-HH---------HHHHHHHHHh
Q 035723 275 ALQSAVNSRIQSLMNKYKEEFIHWDVSNEMLHF--------DFYE-QR---LG----H-DA---------TLHFYETAHQ 328 (528)
Q Consensus 275 ~~~~~~~~~I~~v~~rY~g~v~~WDVvNE~~~~--------~~~~-~~---~G----~-d~---------~~~af~~Ar~ 328 (528)
+..+.+.+|.+.+++||+++|..|=.+|||... .+.. .. .+ . -| -+.|+++.|+
T Consensus 150 ~~~~~F~~Ya~~~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~~~~~~~~~~~h~~llAHa~A~~~~~~ 229 (477)
T PRK15014 150 KVVDFFVRFAEVVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHENPEETMYQVLHHQFVASALAVKAARR 229 (477)
T ss_pred HHHHHHHHHHHHHHHHhcCcCCEEEEecCcccccccccccccccccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999632 1110 10 11 1 11 1467888888
Q ss_pred hCCCcEEEeecCCcccCCCCcc--hhHHH-------H--HH----------HHHHH----------------HhCCceee
Q 035723 329 SDPLATLFMNEFNVVETCSDEN--STVDR-------Y--IS----------RLREL----------------KRGGVLMD 371 (528)
Q Consensus 329 ~dP~a~L~~Ndy~~~~~~~~~~--~~~~~-------~--~~----------~v~~l----------------~~~G~~iD 371 (528)
..|+.++-+.-....-.|.... ....+ + ++ +.+.+ +.+| ++|
T Consensus 230 ~~~~~~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~i~~~-~~D 308 (477)
T PRK15014 230 INPEMKVGCMLAMVPLYPYSCNPDDVMFAQESMRERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDLDVLREG-TCD 308 (477)
T ss_pred hCCCCeEEEEEeCceeccCCCCHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHhcCCCCCCCHHHHHHHhcC-CCC
Confidence 8898776432211111121100 00000 0 00 01111 1123 567
Q ss_pred EEeeeccCC---------------------CC-----------CHHHHHHHHHHH-HhCCCCEEEEeeecCCC-------
Q 035723 372 GIGLESHFT---------------------VP-----------NLPLMRAILDKL-ATLNLPIWLTEVDISGK------- 411 (528)
Q Consensus 372 gIG~Q~H~~---------------------~p-----------~~~~i~~~L~~~-a~~glpI~iTE~dv~~~------- 411 (528)
=||+.-+.+ .| .+..++..|..+ ...++||.|||-++...
T Consensus 309 FlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~l~~~~~~Y~~Pi~ItENG~~~~d~~~~~g 388 (477)
T PRK15014 309 YLGFSYYMTNAVKAEGGTGDAISGFEGSVPNPYVKASDWGWQIDPVGLRYALCELYERYQKPLFIVENGFGAYDKVEEDG 388 (477)
T ss_pred EEEEcceeCeeeccCCCCCCCccccccccCCCCcccCCCCCccCcHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCcCcCC
Confidence 787764411 01 245688888876 45789999999999842
Q ss_pred -CChhHHHHHHHHHHHHHh-----cCCCeeEEEEEeeecCC----C--CCcccccCCC----------CCCchHHHHHHH
Q 035723 412 -LDKETQAVYLEQVLREGF-----SHPSVNGIMLWTALHPN----G--CYQMCLTDNN----------LQNLPAGNIVDK 469 (528)
Q Consensus 412 -~~~~~QA~~~~~~~~~~~-----s~p~v~gi~~Wg~~d~~----~--~~~~gL~d~d----------~~pKPAy~~~~~ 469 (528)
..+..+.+|+++.+..+. .--.|.|.+.|++.|.- | ...+||+-=| ..||+++..+++
T Consensus 389 ~i~D~~Ri~Yl~~hl~~l~~Ai~~dGv~v~GY~~WSl~DnfEw~~G~y~~RfGl~~VD~~~~~~~~~~R~pK~S~~wy~~ 468 (477)
T PRK15014 389 SINDDYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCIDCVSFTTGQYSKRYGFIYVNKHDDGTGDMSRSRKKSFNWYKE 468 (477)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhcccCCCccCccceEEECCCCCCCcccceecccHHHHHHH
Confidence 124456677777665443 22359999999998852 3 2357887443 348999999999
Q ss_pred HHHH
Q 035723 470 LLKE 473 (528)
Q Consensus 470 li~e 473 (528)
+|+.
T Consensus 469 ii~~ 472 (477)
T PRK15014 469 VIAS 472 (477)
T ss_pred HHHh
Confidence 9963
No 18
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=98.99 E-value=9.6e-08 Score=103.12 Aligned_cols=258 Identities=12% Similarity=0.112 Sum_probs=165.9
Q ss_pred hhcCeeccCCcccCcccccC--CCccC---cchHHHHHHHHHhcCceEEEeeeeeCCCCCCcccccC----CChHHHHHH
Q 035723 209 ERFNAAVFENELKWYATEPE--QGKIN---YTIADQMMEFVRSNQLIARGHNIFWEDPKYTPAWVRN----LTGPALQSA 279 (528)
Q Consensus 209 ~~Fn~vt~eN~~kW~~~Ep~--~G~~~---~~~~D~~v~~a~~~gi~vrGH~L~W~~~~~~P~W~~~----~~~~~~~~~ 279 (528)
-++|+.++. +.|.+++|+ .+.+| ++..|++++.|+++||.+.- || .|-. +|.|+.. ...++..+.
T Consensus 83 lG~~~yR~s--i~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~V-tL-~H~~--~P~~l~~~~GGW~~~~~~~~ 156 (474)
T PRK09852 83 MGFKVFRTS--IAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLV-TL-CHFD--VPMHLVTEYGSWRNRKMVEF 156 (474)
T ss_pred cCCCeEEee--ceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE-Ee-eCCC--CCHHHHHhcCCCCCHHHHHH
Confidence 479999998 999999997 33333 34568999999999999852 33 3433 8999853 345677889
Q ss_pred HHHHHHHHHHHccCceeEEEeeccccccc---cc-cc---ccC----h-HH---------HHHHHHHHHhhCCCcEEEee
Q 035723 280 VNSRIQSLMNKYKEEFIHWDVSNEMLHFD---FY-EQ---RLG----H-DA---------TLHFYETAHQSDPLATLFMN 338 (528)
Q Consensus 280 ~~~~I~~v~~rY~g~v~~WDVvNE~~~~~---~~-~~---~~G----~-d~---------~~~af~~Ar~~dP~a~L~~N 338 (528)
+.+|.+.+++||+++|..|=..|||.... +. .. ..| . -| -+.|+++.|+..|+.++-+.
T Consensus 157 F~~ya~~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~IGi~ 236 (474)
T PRK09852 157 FSRYARTCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQDQVKYQAAHHELVASALATKIAHEVNPQNQVGCM 236 (474)
T ss_pred HHHHHHHHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCCchHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 99999999999999999999999997321 11 00 111 1 11 15678888888888666432
Q ss_pred cCCcccCCCCcc--hhHHH----H-----HH----------HHHHHHhCC--------------ceeeEEeeeccCC---
Q 035723 339 EFNVVETCSDEN--STVDR----Y-----IS----------RLRELKRGG--------------VLMDGIGLESHFT--- 380 (528)
Q Consensus 339 dy~~~~~~~~~~--~~~~~----~-----~~----------~v~~l~~~G--------------~~iDgIG~Q~H~~--- 380 (528)
-....-.|.... ....+ + ++ +.+.|.++| .++|=||+.-+..
T Consensus 237 ~~~~~~~P~~~~~~d~~AA~~~~~~~~~~~d~~~~G~YP~~~~~~~~~~~~~p~~~~~d~~~i~~~~DFlGiNyYt~~~v 316 (474)
T PRK09852 237 LAGGNFYPYSCKPEDVWAALEKDRENLFFIDVQARGAYPAYSARVFREKGVTIDKAPGDDEILKNTVDFVSFSYYASRCA 316 (474)
T ss_pred EeCCeeeeCCCCHHHHHHHHHHHHHhhhhcchhhCCCccHHHHHHHHhcCCCCCCCHHHHHHhcCCCCEEEEccccCeec
Confidence 211111121100 00000 0 00 011121112 1457788763311
Q ss_pred -------------------CC-----------CHHHHHHHHHHH-HhCCCCEEEEeeecCCC--------CChhHHHHHH
Q 035723 381 -------------------VP-----------NLPLMRAILDKL-ATLNLPIWLTEVDISGK--------LDKETQAVYL 421 (528)
Q Consensus 381 -------------------~p-----------~~~~i~~~L~~~-a~~glpI~iTE~dv~~~--------~~~~~QA~~~ 421 (528)
.| .+..++..|..+ ...++||.|||-++... ..+..+-+|+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~gw~i~P~Gl~~~l~~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl 396 (474)
T PRK09852 317 SAEMNANNSSAANVVKSLRNPYLQVSDWGWGIDPLGLRITMNMMYDRYQKPLFLVENGLGAKDEIAANGEINDDYRISYL 396 (474)
T ss_pred ccCCCCCCCCcCCceecccCCCcccCCCCCeeChHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCcCCCCccCCHHHHHHH
Confidence 01 245688889877 46789999999999742 1244566677
Q ss_pred HHHHHHHh----cCCCeeEEEEEeeecCC----C--CCcccccCCCCC----------CchHHHHHHHHHH
Q 035723 422 EQVLREGF----SHPSVNGIMLWTALHPN----G--CYQMCLTDNNLQ----------NLPAGNIVDKLLK 472 (528)
Q Consensus 422 ~~~~~~~~----s~p~v~gi~~Wg~~d~~----~--~~~~gL~d~d~~----------pKPAy~~~~~li~ 472 (528)
++.+..+. .--.|.|.+.|++.|.- | ...+||+.=|+. ||+++..++++|+
T Consensus 397 ~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn~Ew~~G~y~~RfGLv~VD~~~~~~~t~~R~pK~S~~wy~~ii~ 467 (474)
T PRK09852 397 REHIRAMGEAIADGIPLMGYTTWGCIDLVSASTGEMSKRYGFVYVDRDDAGNGTLTRTRKKSFWWYKKVIA 467 (474)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeecccccccccCCCccceeeeEEECCCCCCCcccceecccHHHHHHHHHH
Confidence 76665443 22459999999998863 3 135888865554 8999999999995
No 19
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=98.94 E-value=2.7e-07 Score=99.83 Aligned_cols=258 Identities=13% Similarity=0.136 Sum_probs=165.8
Q ss_pred hhcCeeccCCcccCcccccC--CCccCcc---hHHHHHHHHHhcCceEEEeeeeeCCCCCCcccccC----CChHHHHHH
Q 035723 209 ERFNAAVFENELKWYATEPE--QGKINYT---IADQMMEFVRSNQLIARGHNIFWEDPKYTPAWVRN----LTGPALQSA 279 (528)
Q Consensus 209 ~~Fn~vt~eN~~kW~~~Ep~--~G~~~~~---~~D~~v~~a~~~gi~vrGH~L~W~~~~~~P~W~~~----~~~~~~~~~ 279 (528)
-++|+-++. +.|.+|+|. .|.+|-+ -.+++++-|.++||+.. -|| +|-. +|.|+.. +..+++.+.
T Consensus 79 lG~~~yRfS--IsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~-VTL-~H~d--lP~~L~~~yGGW~n~~~i~~ 152 (476)
T PRK09589 79 MGFKCFRTS--IAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPV-VTL-SHFE--MPYHLVTEYGGWRNRKLIDF 152 (476)
T ss_pred cCCCEEEec--cchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEE-EEe-cCCC--CCHHHHHhcCCcCChHHHHH
Confidence 369999987 999999997 4445543 35789999999999886 344 4433 8999853 345678889
Q ss_pred HHHHHHHHHHHccCceeEEEeeccccccc--------cc-cc---ccC----h-HH---------HHHHHHHHHhhCCCc
Q 035723 280 VNSRIQSLMNKYKEEFIHWDVSNEMLHFD--------FY-EQ---RLG----H-DA---------TLHFYETAHQSDPLA 333 (528)
Q Consensus 280 ~~~~I~~v~~rY~g~v~~WDVvNE~~~~~--------~~-~~---~~G----~-d~---------~~~af~~Ar~~dP~a 333 (528)
+.+|.+.++++|+++|..|=-.|||.... +. .. ..| . -| -+.|+++.|+..|+.
T Consensus 153 F~~YA~~~f~~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~~~~~~~~~~h~~llAha~A~~~~~~~~~~~ 232 (476)
T PRK09589 153 FVRFAEVVFTRYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGEDREQIMYQAAHYELVASALAVKTGHEINPDF 232 (476)
T ss_pred HHHHHHHHHHHhcCCCCEEEEecchhhhhccccccCCccccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999997421 11 00 112 1 11 145788888888987
Q ss_pred EEEeecCCcccCCCCcc--hhH----------------------HHHHHHHH-------------HHHhCCceeeEEeee
Q 035723 334 TLFMNEFNVVETCSDEN--STV----------------------DRYISRLR-------------ELKRGGVLMDGIGLE 376 (528)
Q Consensus 334 ~L~~Ndy~~~~~~~~~~--~~~----------------------~~~~~~v~-------------~l~~~G~~iDgIG~Q 376 (528)
++-+.-....-.|.... ... ..+.+.++ +++.+| ++|=||++
T Consensus 233 ~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~t~~d~~~l~~g-~~DFlGiN 311 (476)
T PRK09589 233 QIGCMIAMCPIYPLTCAPNDMMMATKAMHRRYWFTDVHVRGYYPQHILNYFARKGFNLDITPEDNAILAEG-CVDYIGFS 311 (476)
T ss_pred cEEEEEeCCeeeeCCCCHHHHHHHHHHHHhccceecceeCCCCcHHHHHHHHhcCCCCCCCHHHHHHHhcC-CCCEEEEe
Confidence 76322111111111000 000 00111111 112233 56888876
Q ss_pred ccCCC----------------------C-----------CHHHHHHHHHHH-HhCCCCEEEEeeecCCC--------CCh
Q 035723 377 SHFTV----------------------P-----------NLPLMRAILDKL-ATLNLPIWLTEVDISGK--------LDK 414 (528)
Q Consensus 377 ~H~~~----------------------p-----------~~~~i~~~L~~~-a~~glpI~iTE~dv~~~--------~~~ 414 (528)
.+.+. | .+..++..|..+ ...++||.|||-++... ..+
T Consensus 312 yYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~L~~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D 391 (476)
T PRK09589 312 YYMSFATKFHEDNPQLDYVETRDLVSNPYVKASEWGWQIDPAGLRYSLNWFWDHYQLPLFIVENGFGAIDQREADGTVND 391 (476)
T ss_pred cccCcccccCCCCCCCCcccccccccCCCcccCCCCCccCcHHHHHHHHHHHHhcCCCEEEEeCCcccCCCCCcCCcccC
Confidence 44320 0 135688888877 46789999999999742 124
Q ss_pred hHHHHHHHHHHHHHh-----cCCCeeEEEEEeeecCC----C--CCcccccCCCCC----------CchHHHHHHHHHHH
Q 035723 415 ETQAVYLEQVLREGF-----SHPSVNGIMLWTALHPN----G--CYQMCLTDNNLQ----------NLPAGNIVDKLLKE 473 (528)
Q Consensus 415 ~~QA~~~~~~~~~~~-----s~p~v~gi~~Wg~~d~~----~--~~~~gL~d~d~~----------pKPAy~~~~~li~e 473 (528)
..+-+|+++.+..+. .--.|.|.+.|++.|.- | ...+||+-=|+. ||+++..++++++.
T Consensus 392 ~~Ri~Yl~~hl~~~~~Ai~~dGv~V~GY~~WSl~Dn~Ew~~G~y~~RfGlv~VD~~~~~~~t~~R~pK~S~~wy~~~i~~ 471 (476)
T PRK09589 392 HYRIDYLAAHIREMKKAVVEDGVDLMGYTPWGCIDLVSAGTGEMKKRYGFIYVDKDNEGKGTLERSRKKSFYWYRDVIAN 471 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccccccccccCCccccceeeEEEcCCCCCCcccccccccHHHHHHHHHHh
Confidence 456677776665443 22358999999998863 3 236888855554 89999999999853
No 20
>PLN02849 beta-glucosidase
Probab=98.89 E-value=3e-07 Score=99.89 Aligned_cols=256 Identities=13% Similarity=0.180 Sum_probs=164.2
Q ss_pred hhcCeeccCCcccCcccccCC-CccCcch---HHHHHHHHHhcCceEEEeeeeeCCCCCCcccccC----CChHHHHHHH
Q 035723 209 ERFNAAVFENELKWYATEPEQ-GKINYTI---ADQMMEFVRSNQLIARGHNIFWEDPKYTPAWVRN----LTGPALQSAV 280 (528)
Q Consensus 209 ~~Fn~vt~eN~~kW~~~Ep~~-G~~~~~~---~D~~v~~a~~~gi~vrGH~L~W~~~~~~P~W~~~----~~~~~~~~~~ 280 (528)
-++|.-++. +.|.+|+|.. |.+|-+. .+++++-|.++||+..- || +|=. +|.|+.. +..++..+.+
T Consensus 91 lG~~aYRfS--IsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~V-TL-~H~d--lP~~L~~~yGGW~nr~~v~~F 164 (503)
T PLN02849 91 TGLDAFRFS--ISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHV-TL-FHYD--HPQYLEDDYGGWINRRIIKDF 164 (503)
T ss_pred cCCCeEEEe--ccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEE-ee-cCCC--CcHHHHHhcCCcCCchHHHHH
Confidence 368988887 9999999973 5555433 57899999999999873 43 3432 8999864 2345678899
Q ss_pred HHHHHHHHHHccCceeEEEeeccccccc-------ccccc--c--------C----hHH---------HHHHHHHHHhh-
Q 035723 281 NSRIQSLMNKYKEEFIHWDVSNEMLHFD-------FYEQR--L--------G----HDA---------TLHFYETAHQS- 329 (528)
Q Consensus 281 ~~~I~~v~~rY~g~v~~WDVvNE~~~~~-------~~~~~--~--------G----~d~---------~~~af~~Ar~~- 329 (528)
.+|.+.+++||+++|..|=-.|||.... .+... . + .-| -+.|+++.|+.
T Consensus 165 ~~YA~~~f~~fgDrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~A~~~~~~~~ 244 (503)
T PLN02849 165 TAYADVCFREFGNHVKFWTTINEANIFTIGGYNDGITPPGRCSSPGRNCSSGNSSTEPYIVGHNLLLAHASVSRLYKQKY 244 (503)
T ss_pred HHHHHHHHHHhcCcCCEEEEecchhhhhhchhhhccCCCCccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999997421 11100 0 1 011 14567777765
Q ss_pred --CCCcEEEe-ecCCcccCCCCcch--h-----HHHH------------------HHHHH-----------HHHhCCcee
Q 035723 330 --DPLATLFM-NEFNVVETCSDENS--T-----VDRY------------------ISRLR-----------ELKRGGVLM 370 (528)
Q Consensus 330 --dP~a~L~~-Ndy~~~~~~~~~~~--~-----~~~~------------------~~~v~-----------~l~~~G~~i 370 (528)
.|+.++-+ +..... .|..... . ...+ .+.++ +++ +| ++
T Consensus 245 ~~~~~~~IGi~~~~~~~-~P~~~~~~D~~AA~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~i-~~-~~ 321 (503)
T PLN02849 245 KDMQGGSIGFSLFALGF-TPSTSSKDDDIATQRAKDFYLGWMLEPLIFGDYPDEMKRTIGSRLPVFSKEESEQV-KG-SS 321 (503)
T ss_pred cCCCCCEEEEEEECcee-ecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHh-cC-CC
Confidence 37766643 222221 1211000 0 0001 11110 111 22 56
Q ss_pred eEEeeeccCC-----------------------C--C---------CHHHHHHHHHHHH-hCCC-CEEEEeeecCCC---
Q 035723 371 DGIGLESHFT-----------------------V--P---------NLPLMRAILDKLA-TLNL-PIWLTEVDISGK--- 411 (528)
Q Consensus 371 DgIG~Q~H~~-----------------------~--p---------~~~~i~~~L~~~a-~~gl-pI~iTE~dv~~~--- 411 (528)
|=||++-+.. . + .+..++..|..+. ..++ ||.|||-++...
T Consensus 322 DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~L~~~~~rY~~pPi~ITENG~~~~d~~ 401 (503)
T PLN02849 322 DFIGVIHYLAASVTNIKIKPSLSGNPDFYSDMGVSLGKFSAFEYAVAPWAMESVLEYIKQSYGNPPVYILENGTPMKQDL 401 (503)
T ss_pred CEEEEeccchhhcccCCCCCCCCCCCccccccCCCCCccCCCCCeEChHHHHHHHHHHHHhcCCCCEEEeCCCCCccCCC
Confidence 8888773321 0 0 1446888888764 5777 799999999742
Q ss_pred ---CChhHHHHHHHHHHHHHh----cCCCeeEEEEEeeecCCCC-----CcccccCCCCC-------CchHHHHHHHHHH
Q 035723 412 ---LDKETQAVYLEQVLREGF----SHPSVNGIMLWTALHPNGC-----YQMCLTDNNLQ-------NLPAGNIVDKLLK 472 (528)
Q Consensus 412 ---~~~~~QA~~~~~~~~~~~----s~p~v~gi~~Wg~~d~~~~-----~~~gL~d~d~~-------pKPAy~~~~~li~ 472 (528)
..+..+.+|+++.+..+. .--.|.|.+.|++.|.-.| ..+||+.=|+. ||+++..++++|+
T Consensus 402 ~~~v~D~~Ri~Yl~~hL~~l~~Ai~dGv~V~GY~~WSl~DnfEW~~Gy~~RfGLi~VD~~~~~~~R~pK~S~~wy~~ii~ 481 (503)
T PLN02849 402 QLQQKDTPRIEYLHAYIGAVLKAVRNGSDTRGYFVWSFMDLYELLKGYEFSFGLYSVNFSDPHRKRSPKLSAHWYSAFLK 481 (503)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceecccHHHHHHHHHH
Confidence 235567778877776544 2245999999999886432 36888865543 8999999999996
Q ss_pred H
Q 035723 473 E 473 (528)
Q Consensus 473 e 473 (528)
.
T Consensus 482 ~ 482 (503)
T PLN02849 482 G 482 (503)
T ss_pred h
Confidence 4
No 21
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=98.85 E-value=7.2e-07 Score=96.41 Aligned_cols=257 Identities=12% Similarity=0.100 Sum_probs=164.9
Q ss_pred hhcCeeccCCcccCcccccC-CCccCcch---HHHHHHHHHhcCceEEEeeeeeCCCCCCcccccC---CChHHHHHHHH
Q 035723 209 ERFNAAVFENELKWYATEPE-QGKINYTI---ADQMMEFVRSNQLIARGHNIFWEDPKYTPAWVRN---LTGPALQSAVN 281 (528)
Q Consensus 209 ~~Fn~vt~eN~~kW~~~Ep~-~G~~~~~~---~D~~v~~a~~~gi~vrGH~L~W~~~~~~P~W~~~---~~~~~~~~~~~ 281 (528)
-++|.-++. +.|.+|+|. .|.+|-+. .+++++-|.++||+.. -|| +|=. +|.|+.. ...++..+.+.
T Consensus 65 lG~~~yRfS--IsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~-VTL-~H~d--lP~~L~~~GGW~n~~~v~~F~ 138 (467)
T TIGR01233 65 YGVNGIRIS--IAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPF-VTL-HHFD--TPEALHSNGDFLNRENIEHFI 138 (467)
T ss_pred cCCCEEEEe--cchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEE-Eec-cCCC--CcHHHHHcCCCCCHHHHHHHH
Confidence 479999987 999999996 45555433 5789999999999986 343 4433 8999964 34567889999
Q ss_pred HHHHHHHHHccCceeEEEeeccccccc-------cccccc-C---hHH---------HHHHHHHHHhhCCCcEEEeecCC
Q 035723 282 SRIQSLMNKYKEEFIHWDVSNEMLHFD-------FYEQRL-G---HDA---------TLHFYETAHQSDPLATLFMNEFN 341 (528)
Q Consensus 282 ~~I~~v~~rY~g~v~~WDVvNE~~~~~-------~~~~~~-G---~d~---------~~~af~~Ar~~dP~a~L~~Ndy~ 341 (528)
+|.+.++++|++ |..|=-.|||.... .+.... . .-| -+.|+++.|+..|+.++-+.-..
T Consensus 139 ~YA~~~f~~fgd-Vk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~a~hn~l~AHa~A~~~~~~~~~~~~IGi~~~~ 217 (467)
T TIGR01233 139 DYAAFCFEEFPE-VNYWTTFNEIGPIGDGQYLVGKFPPGIKYDLAKVFQSHHNMMVSHARAVKLYKDKGYKGEIGVVHAL 217 (467)
T ss_pred HHHHHHHHHhCC-CCEEEEecchhhhhhccchhcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 999999999997 99999999997421 111100 1 111 15688888988898777433211
Q ss_pred cccCCCC-cch--hH-----HHH------------------HHHHH-----------------HHHh--CCceeeEEeee
Q 035723 342 VVETCSD-ENS--TV-----DRY------------------ISRLR-----------------ELKR--GGVLMDGIGLE 376 (528)
Q Consensus 342 ~~~~~~~-~~~--~~-----~~~------------------~~~v~-----------------~l~~--~G~~iDgIG~Q 376 (528)
..-.|.+ ... .. ..+ .+.+. +++. +| ++|=||++
T Consensus 218 ~~~~P~~~~~~~D~~aA~~~~~~~~~~f~d~~~~G~Yp~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~-~~DFlGin 296 (467)
T TIGR01233 218 PTKYPYDPENPADVRAAELEDIIHNKFILDATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALDAAKD-LNDFLGIN 296 (467)
T ss_pred ceeEECCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHhhhhccCCCCCCCHHHHHHHhccCC-CCCEEEEc
Confidence 1112211 100 00 001 11110 1111 12 45777765
Q ss_pred ccCCC--------------------------------------C--------CHHHHHHHHHHHH-hCCC--CEEEEeee
Q 035723 377 SHFTV--------------------------------------P--------NLPLMRAILDKLA-TLNL--PIWLTEVD 407 (528)
Q Consensus 377 ~H~~~--------------------------------------p--------~~~~i~~~L~~~a-~~gl--pI~iTE~d 407 (528)
-+... + .+..++..|..+. ..++ ||.|||-+
T Consensus 297 yYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~P~Gl~~~L~~~~~~Y~~~ppi~ItENG 376 (467)
T TIGR01233 297 YYMSDWMQAFDGETEIIHNGKGEKGSSKYQIKGVGRRVAPDYVPRTDWDWIIYPEGLYDQIMRVKNDYPNYKKIYITENG 376 (467)
T ss_pred cccceeeccCCCccccccCCccccCcccccCCCcccccCCCCCCcCCCCCeeChHHHHHHHHHHHHHcCCCCCEEEeCCC
Confidence 43110 0 1456888888764 5676 69999999
Q ss_pred cCCC-------CChhHHHHHHHHHHHHHh----cCCCeeEEEEEeeecCCCC-----CcccccCCCC-----CCchHHHH
Q 035723 408 ISGK-------LDKETQAVYLEQVLREGF----SHPSVNGIMLWTALHPNGC-----YQMCLTDNNL-----QNLPAGNI 466 (528)
Q Consensus 408 v~~~-------~~~~~QA~~~~~~~~~~~----s~p~v~gi~~Wg~~d~~~~-----~~~gL~d~d~-----~pKPAy~~ 466 (528)
+... ..+..+.+||++.+..+. +--.|.|.+.|++.|.-.| ..+||+.=|+ +||+++..
T Consensus 377 ~~~~d~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~v~GY~~WSl~Dn~Ew~~Gy~~RfGLv~VD~~t~~R~~K~S~~w 456 (467)
T TIGR01233 377 LGYKDEFVDNTVYDDGRIDYVKQHLEVLSDAIADGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFDTQERYPKKSAHW 456 (467)
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCccccccHHHH
Confidence 9742 124556777777766444 2245999999999886432 3578876555 48999999
Q ss_pred HHHHHHH
Q 035723 467 VDKLLKE 473 (528)
Q Consensus 467 ~~~li~e 473 (528)
++++|+.
T Consensus 457 y~~ii~~ 463 (467)
T TIGR01233 457 YKKLAET 463 (467)
T ss_pred HHHHHHh
Confidence 9999853
No 22
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.59 E-value=8.1e-06 Score=86.35 Aligned_cols=263 Identities=16% Similarity=0.221 Sum_probs=167.3
Q ss_pred hHHH---HHH-hhcCeeccCCcccCcccccCCCc--cCcch---HHHHHHHHHhcCceEEEeeeeeCCCCCCcccccCC-
Q 035723 202 PYQK---WFV-ERFNAAVFENELKWYATEPEQGK--INYTI---ADQMMEFVRSNQLIARGHNIFWEDPKYTPAWVRNL- 271 (528)
Q Consensus 202 ~y~~---~~~-~~Fn~vt~eN~~kW~~~Ep~~G~--~~~~~---~D~~v~~a~~~gi~vrGH~L~W~~~~~~P~W~~~~- 271 (528)
+|++ +++ -+||+.++. +.|.+|.|..+. .|=.. .|++++-|.++||...- || .|=. +|-|+...
T Consensus 60 rYkeDi~L~~emG~~~~R~S--I~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~v-TL-~Hfd--~P~~L~~~y 133 (460)
T COG2723 60 RYKEDIALAKEMGLNAFRTS--IEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFV-TL-YHFD--LPLWLQKPY 133 (460)
T ss_pred hhHHHHHHHHHcCCCEEEee--eeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEE-Ee-cccC--CcHHHhhcc
Confidence 4554 444 379999887 999999997655 44332 58999999999999873 43 2322 88888652
Q ss_pred ---ChHHHHHHHHHHHHHHHHHccCceeEEEeeccccccc-------cccc-ccChH-----------HHHHHHHHHHhh
Q 035723 272 ---TGPALQSAVNSRIQSLMNKYKEEFIHWDVSNEMLHFD-------FYEQ-RLGHD-----------ATLHFYETAHQS 329 (528)
Q Consensus 272 ---~~~~~~~~~~~~I~~v~~rY~g~v~~WDVvNE~~~~~-------~~~~-~~G~d-----------~~~~af~~Ar~~ 329 (528)
...+...++.+|.+.+++||+++|..|=..|||+... .+.. ..... .-+.|.+..|+.
T Consensus 134 gGW~nR~~i~~F~~ya~~vf~~f~dkVk~W~TFNE~n~~~~~~y~~~~~~p~~~~~~~~~qa~hh~~lA~A~avk~~~~~ 213 (460)
T COG2723 134 GGWENRETVDAFARYAATVFERFGDKVKYWFTFNEPNVVVELGYLYGGHPPGIVDPKAAYQVAHHMLLAHALAVKAIKKI 213 (460)
T ss_pred CCccCHHHHHHHHHHHHHHHHHhcCcceEEEEecchhhhhcccccccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2356788999999999999999999999999997421 1110 11111 114577888888
Q ss_pred CCC--cEEEeecCCcccCCCCcch------h-HHHHH-----H----------HHHHHHhCC---------------cee
Q 035723 330 DPL--ATLFMNEFNVVETCSDENS------T-VDRYI-----S----------RLRELKRGG---------------VLM 370 (528)
Q Consensus 330 dP~--a~L~~Ndy~~~~~~~~~~~------~-~~~~~-----~----------~v~~l~~~G---------------~~i 370 (528)
.|+ +-+.+|--.. +|-+... . .+.+- + +++.|.+.| ..+
T Consensus 214 ~~~~kIG~~~~~~p~--YP~s~~p~dv~aA~~~~~~~n~~FlD~~~~G~yp~~~~~~~~~~~~~~~~~~~Dl~~lk~~~~ 291 (460)
T COG2723 214 NPKGKVGIILNLTPA--YPLSDKPEDVKAAENADRFHNRFFLDAQVKGEYPEYLEKELEENGILPEIEDGDLEILKENTV 291 (460)
T ss_pred CCcCceEEEeccCcC--CCCCCCHHHHHHHHHHHHHhhhhhcchhhcCcCCHHHHHHHHhcCCCcccCcchHHHHhcCCC
Confidence 885 5556663221 2211100 0 00000 0 122222222 137
Q ss_pred eEEeeeccC-C-----------------------CC-----------CHHHHHHHHHHHH-hCCCCEEEEeeecCCC---
Q 035723 371 DGIGLESHF-T-----------------------VP-----------NLPLMRAILDKLA-TLNLPIWLTEVDISGK--- 411 (528)
Q Consensus 371 DgIG~Q~H~-~-----------------------~p-----------~~~~i~~~L~~~a-~~glpI~iTE~dv~~~--- 411 (528)
|=||+--+. + .| .+..++..|.++- +.++|+.|||=++...
T Consensus 292 DfiG~NYY~~s~v~~~~~~~~~~~~~~~~~~~~~~p~~~~sdwGWeI~P~GL~~~l~~~~~rY~~p~fItENG~G~~d~~ 371 (460)
T COG2723 292 DFIGLNYYTPSRVKAAEPRYVSGYGPGGFFTSVPNPGLEVSDWGWEIYPKGLYDILEKLYERYGIPLFITENGLGVKDEV 371 (460)
T ss_pred CeEEEeeeeeeeEeeccCCcCCcccccccccccCCCCCcccCCCceeChHHHHHHHHHHHHHhCCCeEEecCCCCccccc
Confidence 888886554 1 01 2567888898875 7899999999886642
Q ss_pred ----CChhHHHHHHHHHHHHHh----cCCCeeEEEEEeeecCCCC-----Cccccc--CC----CCCCchHHHHHHHHHH
Q 035723 412 ----LDKETQAVYLEQVLREGF----SHPSVNGIMLWTALHPNGC-----YQMCLT--DN----NLQNLPAGNIVDKLLK 472 (528)
Q Consensus 412 ----~~~~~QA~~~~~~~~~~~----s~p~v~gi~~Wg~~d~~~~-----~~~gL~--d~----d~~pKPAy~~~~~li~ 472 (528)
..+..+-+|+++.+..+. .--.|.|.+.|++.|--.| ..+||+ |. ..++|+.+..+++++.
T Consensus 372 ~~~~i~DdyRI~Yl~~Hl~~v~~AI~dGv~v~GY~~Ws~iD~~sw~~gy~kRYGli~VD~~~~~~R~~KkS~~WyK~vi~ 451 (460)
T COG2723 372 DFDGINDDYRIDYLKEHLKAVKKAIEDGVDVRGYFAWSLIDNYSWANGYKKRYGLVYVDYDTDLERTPKKSFYWYKEVIE 451 (460)
T ss_pred ccCCcCchHHHHHHHHHHHHHHHHHHcCCCcccceecccccccchhhccccccccEEEcccccceeeecCceeeeHHHHh
Confidence 134556678777775443 2246999999999886432 245655 32 2357888888888874
No 23
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.49 E-value=2e-05 Score=77.78 Aligned_cols=278 Identities=20% Similarity=0.219 Sum_probs=184.9
Q ss_pred eeeecCCCceEEeecCC---------ccC-C---hhHHHHHH-hhcCeeccCCcccCcccccCCC------ccCcchHHH
Q 035723 180 IEQVSKDFPFGSAIAST---------ILG-N---LPYQKWFV-ERFNAAVFENELKWYATEPEQG------KINYTIADQ 239 (528)
Q Consensus 180 v~~~~~~F~fG~av~~~---------~~~-~---~~y~~~~~-~~Fn~vt~eN~~kW~~~Ep~~G------~~~~~~~D~ 239 (528)
|+..+.+|.+|+.++.- ..+ + +.-.+.++ ...|+|+++ -|..=-.+.| .=+...+-+
T Consensus 32 v~~~~~dFikGaDis~l~~lE~~Gvkf~d~ng~~qD~~~iLK~~GvNyvRlR---vwndP~dsngn~yggGnnD~~k~ie 108 (403)
T COG3867 32 VENSPNDFIKGADISSLIELENSGVKFFDTNGVRQDALQILKNHGVNYVRLR---VWNDPYDSNGNGYGGGNNDLKKAIE 108 (403)
T ss_pred ccCChHHhhccccHHHHHHHHHcCceEEccCChHHHHHHHHHHcCcCeEEEE---EecCCccCCCCccCCCcchHHHHHH
Confidence 34456778888766521 111 1 22234444 579999997 5544222332 234455566
Q ss_pred HHHHHHhcCceEEE--eee-eeCCCC--CCc-ccccCCChHHHHHHHHHHHHHHHHHccC---ceeEEEeeccccccccc
Q 035723 240 MMEFVRSNQLIARG--HNI-FWEDPK--YTP-AWVRNLTGPALQSAVNSRIQSLMNKYKE---EFIHWDVSNEMLHFDFY 310 (528)
Q Consensus 240 ~v~~a~~~gi~vrG--H~L-~W~~~~--~~P-~W~~~~~~~~~~~~~~~~I~~v~~rY~g---~v~~WDVvNE~~~~~~~ 310 (528)
+..-|+.+||+|.. |-- +|..+. ..| .|. .++-+.++.++-+|-+.++++.+. .+..-.|=||....-.|
T Consensus 109 iakRAk~~GmKVl~dFHYSDfwaDPakQ~kPkaW~-~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflw 187 (403)
T COG3867 109 IAKRAKNLGMKVLLDFHYSDFWADPAKQKKPKAWE-NLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLW 187 (403)
T ss_pred HHHHHHhcCcEEEeeccchhhccChhhcCCcHHhh-hcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceec
Confidence 77788899999973 432 243221 123 343 357788999999999999998774 46677899998765445
Q ss_pred ccccCh------HHHHHHHHHHHhhCCCcEEEeecCCcccCCCCcchhHHHHHHHHHHHHhCCceeeEEeeeccCC-CCC
Q 035723 311 EQRLGH------DATLHFYETAHQSDPLATLFMNEFNVVETCSDENSTVDRYISRLRELKRGGVLMDGIGLESHFT-VPN 383 (528)
Q Consensus 311 ~~~~G~------d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~v~~l~~~G~~iDgIG~Q~H~~-~p~ 383 (528)
..--|. ..+.++++++|+.+|+.++.+-=-+. . +...|.-..++|..+++++|.||+-.+.. -.+
T Consensus 188 p~Ge~~~f~k~a~L~n~g~~avrev~p~ikv~lHla~g----~----~n~~y~~~fd~ltk~nvdfDVig~SyYpyWhgt 259 (403)
T COG3867 188 PDGEGRNFDKMAALLNAGIRAVREVSPTIKVALHLAEG----E----NNSLYRWIFDELTKRNVDFDVIGSSYYPYWHGT 259 (403)
T ss_pred cCCCCcChHHHHHHHHHHhhhhhhcCCCceEEEEecCC----C----CCchhhHHHHHHHHcCCCceEEeeeccccccCc
Confidence 432222 34678899999999999998863222 1 12345555688999999999999976643 246
Q ss_pred HHHHHHHHHHHHh-CCCCEEEEeeecCC--------------C-------CChhHHHHHHHHHHHHHhcCCC--eeEEEE
Q 035723 384 LPLMRAILDKLAT-LNLPIWLTEVDISG--------------K-------LDKETQAVYLEQVLREGFSHPS--VNGIML 439 (528)
Q Consensus 384 ~~~i~~~L~~~a~-~glpI~iTE~dv~~--------------~-------~~~~~QA~~~~~~~~~~~s~p~--v~gi~~ 439 (528)
+..+...|+..|. .++.+.|-|....- . .+-+-||.++++++....+.|. -.||..
T Consensus 260 l~nL~~nl~dia~rY~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~nvp~~~GlGvFY 339 (403)
T COG3867 260 LNNLTTNLNDIASRYHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKNVPKSNGLGVFY 339 (403)
T ss_pred HHHHHhHHHHHHHHhcCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHhCCCCCceEEEE
Confidence 7788888888764 69999999987731 0 1235689999999999998875 478888
Q ss_pred Eee-ec----CCC-------------------CCcccccCCCCCCchHHHHHHH
Q 035723 440 WTA-LH----PNG-------------------CYQMCLTDNNLQNLPAGNIVDK 469 (528)
Q Consensus 440 Wg~-~d----~~~-------------------~~~~gL~d~d~~pKPAy~~~~~ 469 (528)
|.- |- +.+ ..+-.|||-+..|.|+..++.-
T Consensus 340 WEp~wipv~~g~gwat~~~~~y~~e~w~~gsavdNqaLfdf~G~~LPSl~vFn~ 393 (403)
T COG3867 340 WEPAWIPVVLGSGWATSYAAKYDPENWGEGSAVDNQALFDFNGHPLPSLNVFNY 393 (403)
T ss_pred ecccceeccCCCccccchhhccCcccccCCCccchhhhhhccCCcCcchhhhhh
Confidence 874 21 111 1355789999999999888754
No 24
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=98.36 E-value=3.7e-05 Score=78.49 Aligned_cols=215 Identities=13% Similarity=0.134 Sum_probs=125.7
Q ss_pred HhhcCeeccCCcccCcccccCCCccCcchHHHHHHHHHhcCceEEEeeeeeCCCCCCcccc---cCCChHHHHHHHHHHH
Q 035723 208 VERFNAAVFENELKWYATEPEQGKINYTIADQMMEFVRSNQLIARGHNIFWEDPKYTPAWV---RNLTGPALQSAVNSRI 284 (528)
Q Consensus 208 ~~~Fn~vt~eN~~kW~~~Ep~~G~~~~~~~D~~v~~a~~~gi~vrGH~L~W~~~~~~P~W~---~~~~~~~~~~~~~~~I 284 (528)
..+||+++.. .+ ....+++++|.+.||.|---...+..- ....+- .....++..+.+.+.+
T Consensus 47 ~~G~N~iR~~--h~-------------p~~~~~~~~cD~~GilV~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (298)
T PF02836_consen 47 EMGFNAIRTH--HY-------------PPSPRFYDLCDELGILVWQEIPLEGHG-SWQDFGNCNYDADDPEFRENAEQEL 110 (298)
T ss_dssp HTT-SEEEET--TS---------------SHHHHHHHHHHT-EEEEE-S-BSCT-SSSSTSCTSCTTTSGGHHHHHHHHH
T ss_pred hcCcceEEcc--cc-------------cCcHHHHHHHhhcCCEEEEeccccccC-ccccCCccccCCCCHHHHHHHHHHH
Confidence 3589999974 11 133679999999999886443331100 000010 0112345677888899
Q ss_pred HHHHHHccC--ceeEEEeecccccccccccccChHHHHHHHHHHHhhCCCcEEEeecCCcccCCCCcchhHHHHHHHHHH
Q 035723 285 QSLMNKYKE--EFIHWDVSNEMLHFDFYEQRLGHDATLHFYETAHQSDPLATLFMNEFNVVETCSDENSTVDRYISRLRE 362 (528)
Q Consensus 285 ~~v~~rY~g--~v~~WDVvNE~~~~~~~~~~~G~d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~v~~ 362 (528)
++++.|++. .|..|.+-||+ ....+++...+.+|+.||.-.+.++.... ..
T Consensus 111 ~~~v~~~~NHPSIi~W~~gNE~---------~~~~~~~~l~~~~k~~DptRpv~~~~~~~-~~----------------- 163 (298)
T PF02836_consen 111 REMVRRDRNHPSIIMWSLGNES---------DYREFLKELYDLVKKLDPTRPVTYASNGW-DP----------------- 163 (298)
T ss_dssp HHHHHHHTT-TTEEEEEEEESS---------HHHHHHHHHHHHHHHH-TTSEEEEETGTS-GG-----------------
T ss_pred HHHHHcCcCcCchheeecCccC---------ccccchhHHHHHHHhcCCCCceeeccccc-cc-----------------
Confidence 999999987 79999999999 22456788999999999997665554311 00
Q ss_pred HHhCCceeeEEee--eccC--CCCCHHHHHHHHHHH-HhCCCCEEEEeeecCCCC---ChhHHHHHHH-----------H
Q 035723 363 LKRGGVLMDGIGL--ESHF--TVPNLPLMRAILDKL-ATLNLPIWLTEVDISGKL---DKETQAVYLE-----------Q 423 (528)
Q Consensus 363 l~~~G~~iDgIG~--Q~H~--~~p~~~~i~~~L~~~-a~~glpI~iTE~dv~~~~---~~~~QA~~~~-----------~ 423 (528)
.+|.+++ -..+ ..+....+...++.. ...+.|+.+||++..... .......... .
T Consensus 164 ------~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~kP~i~sEyg~~~~~~~g~~~~~~~~~~~~~~~q~~~~~~ 237 (298)
T PF02836_consen 164 ------YVDDIIFDIYSGWYNGYGDPEDFEKYLEDWYKYPDKPIIISEYGADAYNSKGGDSEYWQLWSWYEEYQGAFIWD 237 (298)
T ss_dssp ------STSSCEECSETTTSSSCCHHHHHHHHHHHHHHHCTS-EEEEEESEBBSST-TTHHHHHHHHHHCTTEEEEEESH
T ss_pred ------ccccccccccccccCCcccHHHHHHHHHhccccCCCCeEehhccccccccCCCccccccccccCchhhhhhhhh
Confidence 0111111 1111 123455666667663 568999999999987632 1111111111 1
Q ss_pred HHHHHh--cCCCeeEEEEEeeecCCC------CCcccccCCCCCCchHHHHHHHHH
Q 035723 424 VLREGF--SHPSVNGIMLWTALHPNG------CYQMCLTDNNLQNLPAGNIVDKLL 471 (528)
Q Consensus 424 ~~~~~~--s~p~v~gi~~Wg~~d~~~------~~~~gL~d~d~~pKPAy~~~~~li 471 (528)
....+. ..+.+.|-.+|.+.|=.+ ...-||+|.|.+||++|..++...
T Consensus 238 ~~~~~~~~~~~~~~g~~~w~~~Df~~~~~~~~~~~nGlv~~dR~pK~~~~~~k~~~ 293 (298)
T PF02836_consen 238 YQDQAIQRRDPYVAGEFYWTGFDFGTEPTDYEFEYNGLVDYDRRPKPAYYEYKSQW 293 (298)
T ss_dssp SBHHHEEEEETTESEEEEEETTTTSCSSBTGGGGSBESBETTSEBBHHHHHHHHHH
T ss_pred hhhhhhccccccccceeeecceEeccCCCCCeeeeccEECCcCCcCHHHHHHHHHh
Confidence 222222 235677777887665322 113499999999999998776553
No 25
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=98.34 E-value=7.8e-05 Score=76.84 Aligned_cols=262 Identities=15% Similarity=0.084 Sum_probs=137.8
Q ss_pred CceEEeecCCccCChhHHHHH----HhhcCeeccCCcccCcccccCCCccCcc---hHHHHHHHHHhcCceEEEeeee--
Q 035723 187 FPFGSAIASTILGNLPYQKWF----VERFNAAVFENELKWYATEPEQGKINYT---IADQMMEFVRSNQLIARGHNIF-- 257 (528)
Q Consensus 187 F~fG~av~~~~~~~~~y~~~~----~~~Fn~vt~eN~~kW~~~Ep~~G~~~~~---~~D~~v~~a~~~gi~vrGH~L~-- 257 (528)
|.++..+|...+..+.+++.+ ..+||.|..- +.|...||++|+|||+ ..+++++.|+++||.|.-..-=
T Consensus 10 ~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~y--v~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi 87 (319)
T PF01301_consen 10 FILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTY--VPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVILRPGPYI 87 (319)
T ss_dssp -EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE----HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEEEEEES--
T ss_pred EEEEeeeccccCChhHHHHHHHHHHhCCcceEEEe--ccccccCCCCCcccccchhhHHHHHHHHHHcCcEEEeccccee
Confidence 578889998777644444433 3589999887 9999999999999998 4679999999999987422211
Q ss_pred ---eCCCCCCcccccCC-------ChHHHHHHHHHHHHHHHHHcc-------CceeEEEeecccccccccccccChHHHH
Q 035723 258 ---WEDPKYTPAWVRNL-------TGPALQSAVNSRIQSLMNKYK-------EEFIHWDVSNEMLHFDFYEQRLGHDATL 320 (528)
Q Consensus 258 ---W~~~~~~P~W~~~~-------~~~~~~~~~~~~I~~v~~rY~-------g~v~~WDVvNE~~~~~~~~~~~G~d~~~ 320 (528)
|.. ...|.|+... +.+..++++++|.+.++..-+ |-|..-.|=||-- ......+|++
T Consensus 88 ~aE~~~-gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg-----~~~~~~~Y~~ 161 (319)
T PF01301_consen 88 CAEWDN-GGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYG-----SYGTDRAYME 161 (319)
T ss_dssp -TTBGG-GG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGG-----CTSS-HHHHH
T ss_pred cccccc-hhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhC-----CCcccHhHHH
Confidence 211 2489998653 235677788888887776433 5799999999964 1123457998
Q ss_pred HHHHHHHhhCCC-cEEEeecCCcccCCCCcchhHHHHHHHHHHHHhCCceeeEEeeeccCCCCCHHHHHHHHHHHHhCCC
Q 035723 321 HFYETAHQSDPL-ATLFMNEFNVVETCSDENSTVDRYISRLRELKRGGVLMDGIGLESHFTVPNLPLMRAILDKLATLNL 399 (528)
Q Consensus 321 ~af~~Ar~~dP~-a~L~~Ndy~~~~~~~~~~~~~~~~~~~v~~l~~~G~~iDgIG~Q~H~~~p~~~~i~~~L~~~a~~gl 399 (528)
..-+.+++.-++ +.++-.|......... . . +..+.-+...+++++. +..+....+..+ ..+.
T Consensus 162 ~l~~~~~~~g~~~~~~~t~d~~~~~~~~~-----~-------~-~~g~~~~~~~~~~~~~---~~~~~~~~~~~~-~p~~ 224 (319)
T PF01301_consen 162 ALKDAYRDWGIDPVLLYTTDGPWGSWLPD-----G-------G-LPGADIYATDNFPPGD---NPDEYFGDQRSF-QPNQ 224 (319)
T ss_dssp HHHHHHHHTT-SSSBEEEEESSSHCCHCC-----C---------TTTGSCEEEEEETTTS---SHHHHHHHHHHH-HTTS
T ss_pred HHHHHHHHhhCccceeeccCCCccccccc-----C-------C-CCcceEEeccccCCCc---hHHHHHhhhhhc-CCCC
Confidence 888888888777 5555555432110000 0 0 0111245566666652 111222222323 3456
Q ss_pred CEEEEeeecCC--CCChhHH---HHHHHHHHHHHhcCCCeeEE------EEEeeecC---C------CCCcccccCCCCC
Q 035723 400 PIWLTEVDISG--KLDKETQ---AVYLEQVLREGFSHPSVNGI------MLWTALHP---N------GCYQMCLTDNNLQ 459 (528)
Q Consensus 400 pI~iTE~dv~~--~~~~~~Q---A~~~~~~~~~~~s~p~v~gi------~~Wg~~d~---~------~~~~~gL~d~d~~ 459 (528)
|..++|+.... .++.+.+ ++.+...+...++.....++ |=||++.. . +-.....++++.+
T Consensus 225 P~~~~E~~~Gwf~~WG~~~~~~~~~~~~~~l~~~l~~g~~~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~E~G~ 304 (319)
T PF01301_consen 225 PLMCTEFWGGWFDHWGGPHYTRPAEDVAADLARMLSKGNSLNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPIDEYGQ 304 (319)
T ss_dssp --EEEEEESS---BTTS--HHHHHHHHHHHHHHHHHHCSEEEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-TTS-
T ss_pred CeEEEEeccccccccCCCCccCCHHHHHHHHHHHHHhhcccceeeccccCCccccccCCCCCCCCcccCCcCCccCcCCC
Confidence 99999996443 2322211 22222233333333222222 22344432 1 1123468899999
Q ss_pred CchHHHHHHHHHHH
Q 035723 460 NLPAGNIVDKLLKE 473 (528)
Q Consensus 460 pKPAy~~~~~li~e 473 (528)
+.|-|..+++|+++
T Consensus 305 ~~~Ky~~lr~l~~~ 318 (319)
T PF01301_consen 305 LTPKYYELRRLHQK 318 (319)
T ss_dssp B-HHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHhc
Confidence 99999999999864
No 26
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=97.90 E-value=0.0018 Score=76.63 Aligned_cols=202 Identities=15% Similarity=0.159 Sum_probs=126.2
Q ss_pred hhcCeeccCCcccCcccccCCCccCcchHHHHHHHHHhcCceEEEeeee-eCCCCCCc--ccccCCChHHHHHHHHHHHH
Q 035723 209 ERFNAAVFENELKWYATEPEQGKINYTIADQMMEFVRSNQLIARGHNIF-WEDPKYTP--AWVRNLTGPALQSAVNSRIQ 285 (528)
Q Consensus 209 ~~Fn~vt~eN~~kW~~~Ep~~G~~~~~~~D~~v~~a~~~gi~vrGH~L~-W~~~~~~P--~W~~~~~~~~~~~~~~~~I~ 285 (528)
.+||+++.. . +....++++.|.+.||-|.--.-+ +|.-.... .|+ ...++..+++.+.++
T Consensus 367 ~g~NavR~s--H-------------yP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~--~~~p~~~~~~~~~~~ 429 (1021)
T PRK10340 367 HNINSVRTA--H-------------YPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRI--TDDPQWEKVYVDRIV 429 (1021)
T ss_pred CCCCEEEec--C-------------CCCCHHHHHHHHHCCCEEEECCcccccCcccccccccc--cCCHHHHHHHHHHHH
Confidence 579999863 1 123357899999999987643211 12100011 121 133456677788899
Q ss_pred HHHHHccC--ceeEEEeecccccccccccccChHHHHHHHHHHHhhCCCcEEEeecCCcccCCCCcchhHHHHHHHHHHH
Q 035723 286 SLMNKYKE--EFIHWDVSNEMLHFDFYEQRLGHDATLHFYETAHQSDPLATLFMNEFNVVETCSDENSTVDRYISRLREL 363 (528)
Q Consensus 286 ~v~~rY~g--~v~~WDVvNE~~~~~~~~~~~G~d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~v~~l 363 (528)
+++.|++. .|..|-+-||... |.+ ...+++++|+.||.-.+-+.+ ..
T Consensus 430 ~mV~RdrNHPSIi~WslGNE~~~--------g~~-~~~~~~~~k~~DptR~v~~~~------~~---------------- 478 (1021)
T PRK10340 430 RHIHAQKNHPSIIIWSLGNESGY--------GCN-IRAMYHAAKALDDTRLVHYEE------DR---------------- 478 (1021)
T ss_pred HHHHhCCCCCEEEEEECccCccc--------cHH-HHHHHHHHHHhCCCceEEeCC------Cc----------------
Confidence 99999997 7999999999731 333 478899999999986553321 00
Q ss_pred HhCCceeeEEeeeccCCCCCHHHHHHHHHHHHh--CCCCEEEEeeecCCCCChhHHHHHHHHHHHHHhcCCCeeEEEEEe
Q 035723 364 KRGGVLMDGIGLESHFTVPNLPLMRAILDKLAT--LNLPIWLTEVDISGKLDKETQAVYLEQVLREGFSHPSVNGIMLWT 441 (528)
Q Consensus 364 ~~~G~~iDgIG~Q~H~~~p~~~~i~~~L~~~a~--~glpI~iTE~dv~~~~~~~~QA~~~~~~~~~~~s~p~v~gi~~Wg 441 (528)
.....|.+|. + .+.+.. ++.++. .++|+.++|+.=.-..+.-. ++++.....+||.+.|-.+|.
T Consensus 479 --~~~~~Dv~~~-~---Y~~~~~----~~~~~~~~~~kP~i~~Ey~hamgn~~g~----~~~yw~~~~~~p~l~GgfiW~ 544 (1021)
T PRK10340 479 --DAEVVDVIST-M---YTRVEL----MNEFGEYPHPKPRILCEYAHAMGNGPGG----LTEYQNVFYKHDCIQGHYVWE 544 (1021)
T ss_pred --Cccccceecc-c---cCCHHH----HHHHHhCCCCCcEEEEchHhccCCCCCC----HHHHHHHHHhCCceeEEeeee
Confidence 0113566663 1 122332 333433 36999999986332111111 233334556799999999999
Q ss_pred eecC-------CC------------CC----cc--cccCCCCCCchHHHHHHHHHH
Q 035723 442 ALHP-------NG------------CY----QM--CLTDNNLQNLPAGNIVDKLLK 472 (528)
Q Consensus 442 ~~d~-------~~------------~~----~~--gL~d~d~~pKPAy~~~~~li~ 472 (528)
+.|. .| ++ .. ||++.|.+|||++..++.+.+
T Consensus 545 ~~D~~~~~~~~~G~~~~~ygGd~g~~p~~~~f~~~Glv~~dr~p~p~~~e~k~~~~ 600 (1021)
T PRK10340 545 WCDHGIQAQDDNGNVWYKYGGDYGDYPNNYNFCIDGLIYPDQTPGPGLKEYKQVIA 600 (1021)
T ss_pred cCcccccccCCCCCEEEEECCCCCCCCCCcCcccceeECCCCCCChhHHHHHHhcc
Confidence 9873 11 11 12 899999999999999988764
No 27
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=97.76 E-value=0.004 Score=67.85 Aligned_cols=258 Identities=16% Similarity=0.192 Sum_probs=138.5
Q ss_pred HHHHHHhc--CceEEEeeeeeCCCCCCcccccC---C------C---hHHHHHHHHHHHHHHHHHccC---ceeEEEeec
Q 035723 240 MMEFVRSN--QLIARGHNIFWEDPKYTPAWVRN---L------T---GPALQSAVNSRIQSLMNKYKE---EFIHWDVSN 302 (528)
Q Consensus 240 ~v~~a~~~--gi~vrGH~L~W~~~~~~P~W~~~---~------~---~~~~~~~~~~~I~~v~~rY~g---~v~~WDVvN 302 (528)
++..|.+. +|++-+- -|. .|.|++. + . .++..+.+.+|..+.++.|+. .|.+--+-|
T Consensus 158 ~ik~a~~~~~~lki~aS--pWS----pP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QN 231 (496)
T PF02055_consen 158 LIKEALAINPNLKIFAS--PWS----PPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQN 231 (496)
T ss_dssp HHHHHHHHHTT-EEEEE--ES-------GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSS
T ss_pred HHHHHHHhCCCcEEEEe--cCC----CCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccC
Confidence 45545443 4555543 474 6899974 1 1 235678888888888888885 689999999
Q ss_pred cccccc----ccccc-cC----hHHHHHHHH-HHHhhCC--CcEEEeecCCcccCCCCcchhHHHHHHHHHHHHhC---C
Q 035723 303 EMLHFD----FYEQR-LG----HDATLHFYE-TAHQSDP--LATLFMNEFNVVETCSDENSTVDRYISRLRELKRG---G 367 (528)
Q Consensus 303 E~~~~~----~~~~~-~G----~d~~~~af~-~Ar~~dP--~a~L~~Ndy~~~~~~~~~~~~~~~~~~~v~~l~~~---G 367 (528)
||.... .|... .. .++++..+. ..++..+ ++||++.|-|-... ..|. +.+++. .
T Consensus 232 EP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~--------~~~~---~~il~d~~A~ 300 (496)
T PF02055_consen 232 EPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDNL--------PDYA---DTILNDPEAA 300 (496)
T ss_dssp SCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGT--------THHH---HHHHTSHHHH
T ss_pred CCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCccc--------chhh---hhhhcChhhH
Confidence 998632 23221 11 245655443 4566667 89999988654211 1232 223321 2
Q ss_pred ceeeEEeeeccCCCCCHHHHHHHHHHHH--hCCCCEEEEeeecCCCC-------ChhHHHHHHHHHHHHHhcCCCeeEEE
Q 035723 368 VLMDGIGLESHFTVPNLPLMRAILDKLA--TLNLPIWLTEVDISGKL-------DKETQAVYLEQVLREGFSHPSVNGIM 438 (528)
Q Consensus 368 ~~iDgIG~Q~H~~~p~~~~i~~~L~~~a--~~glpI~iTE~dv~~~~-------~~~~QA~~~~~~~~~~~s~p~v~gi~ 438 (528)
-.|||||+|.+.+.+.. ..|.+.. -.++.|+.||--..... ..-.+++.|...+-..+.| .+.|.+
T Consensus 301 ~yv~GiA~HwY~g~~~~----~~l~~~h~~~P~k~l~~TE~~~g~~~~~~~~~~g~w~~~~~y~~~ii~~lnn-~~~gw~ 375 (496)
T PF02055_consen 301 KYVDGIAFHWYGGDPSP----QALDQVHNKFPDKFLLFTEACCGSWNWDTSVDLGSWDRAERYAHDIIGDLNN-WVSGWI 375 (496)
T ss_dssp TTEEEEEEEETTCS-HC----HHHHHHHHHSTTSEEEEEEEESS-STTS-SS-TTHHHHHHHHHHHHHHHHHT-TEEEEE
T ss_pred hheeEEEEECCCCCchh----hHHHHHHHHCCCcEEEeeccccCCCCcccccccccHHHHHHHHHHHHHHHHh-hceeee
Confidence 37999999998875422 2344433 24789999998765421 1123454444434445666 799999
Q ss_pred EEeee-cCCC---C-----CcccccCC---CCCCchHHHHHHHHHHHhcCCcee--eeec-CCceEEEeeee---eeEEE
Q 035723 439 LWTAL-HPNG---C-----YQMCLTDN---NLQNLPAGNIVDKLLKEWQTGEVT--GHTD-GHGSFSFYGFL---GEYTV 500 (528)
Q Consensus 439 ~Wg~~-d~~~---~-----~~~gL~d~---d~~pKPAy~~~~~li~ew~t~~~~--~~t~-~~G~~~~rgf~---G~y~v 500 (528)
.|.+. |..| + ..+.+.|. .+...|.|.++..+-+--.....+ .+.+ .++.+..-+|. |...|
T Consensus 376 ~WNl~LD~~GGP~~~~n~~d~~iivd~~~~~~~~~p~yY~~gHfSKFV~PGa~RI~st~~~~~~~l~~vAF~nPDGs~vv 455 (496)
T PF02055_consen 376 DWNLALDENGGPNWVGNFCDAPIIVDSDTGEFYKQPEYYAMGHFSKFVRPGAVRIGSTSSSSDSGLEAVAFLNPDGSIVV 455 (496)
T ss_dssp EEESEBETTS---TT---B--SEEEEGGGTEEEE-HHHHHHHHHHTTS-TT-EEEEEEESSSTTTEEEEEEEETTSEEEE
T ss_pred eeeeecCCCCCCcccCCCCCceeEEEcCCCeEEEcHHHHHHHHHhcccCCCCEEEEeeccCCCCceeEEEEECCCCCEEE
Confidence 99974 4322 1 23445554 355689999888775422211122 2222 22234445555 77655
Q ss_pred EEEeCC-eeeEEEEEEecCC
Q 035723 501 SVKYGN-RTANSTFSLCQGD 519 (528)
Q Consensus 501 ~v~~~~-~~~~~~~~l~~~~ 519 (528)
-+--.+ .....+|+|..+.
T Consensus 456 Vv~N~~~~~~~~~v~v~~~~ 475 (496)
T PF02055_consen 456 VVLNRGDSDQNFSVTVKDGS 475 (496)
T ss_dssp EEEE-SSS-EEEEEEEECTT
T ss_pred EEEcCCCCccceEEEEecCC
Confidence 443322 2233345555544
No 28
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=97.48 E-value=0.0001 Score=61.19 Aligned_cols=53 Identities=11% Similarity=0.213 Sum_probs=32.0
Q ss_pred HHHHccC--ceeEEEeecc-ccccc-----ccccccCh---HHHHHHHHHHHhhCCCcEEEeec
Q 035723 287 LMNKYKE--EFIHWDVSNE-MLHFD-----FYEQRLGH---DATLHFYETAHQSDPLATLFMNE 339 (528)
Q Consensus 287 v~~rY~g--~v~~WDVvNE-~~~~~-----~~~~~~G~---d~~~~af~~Ar~~dP~a~L~~Nd 339 (528)
++++|+. +|-+|||+|| |.... .+.+...+ ++++++|+++|++||+..|.++-
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~g~ 64 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTSGF 64 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE--B
T ss_pred CchhhcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEeec
Confidence 4667764 8999999999 54111 11111112 56899999999999999997763
No 29
>PLN03059 beta-galactosidase; Provisional
Probab=97.39 E-value=0.002 Score=73.13 Aligned_cols=148 Identities=12% Similarity=0.132 Sum_probs=108.6
Q ss_pred CceEEeecCCccCChhHHHHH----HhhcCeeccCCcccCcccccCCCccCcch---HHHHHHHHHhcCceEEEe--ee-
Q 035723 187 FPFGSAIASTILGNLPYQKWF----VERFNAAVFENELKWYATEPEQGKINYTI---ADQMMEFVRSNQLIARGH--NI- 256 (528)
Q Consensus 187 F~fG~av~~~~~~~~~y~~~~----~~~Fn~vt~eN~~kW~~~Ep~~G~~~~~~---~D~~v~~a~~~gi~vrGH--~L- 256 (528)
+.+..++|......+.+++.+ ..+||.|..= .-|..-||+||+|||+. ..++++.|++.||-|.-. +-
T Consensus 45 ~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tY--V~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYI 122 (840)
T PLN03059 45 ILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTY--VFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYI 122 (840)
T ss_pred EEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEE--ecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcce
Confidence 467788887666555555544 3579988754 89999999999999974 467889999999876422 11
Q ss_pred --eeCCCCCCcccccCC-------ChHHHHHHHHHHHHHHHHHc---------cCceeEEEeeccccccccccc--ccCh
Q 035723 257 --FWEDPKYTPAWVRNL-------TGPALQSAVNSRIQSLMNKY---------KEEFIHWDVSNEMLHFDFYEQ--RLGH 316 (528)
Q Consensus 257 --~W~~~~~~P~W~~~~-------~~~~~~~~~~~~I~~v~~rY---------~g~v~~WDVvNE~~~~~~~~~--~~G~ 316 (528)
=|.. .+.|.|+... +++..++++++|++.++.+. +|-|....|=||-. ++... .-+.
T Consensus 123 cAEw~~-GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYG--s~~~~~~~~d~ 199 (840)
T PLN03059 123 CAEWNF-GGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYG--PVEWEIGAPGK 199 (840)
T ss_pred eeeecC-CCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEeccccc--ceecccCcchH
Confidence 2543 3689998642 24568888999988888765 36799999999953 22211 2235
Q ss_pred HHHHHHHHHHHhhCCCcEEEeec
Q 035723 317 DATLHFYETAHQSDPLATLFMNE 339 (528)
Q Consensus 317 d~~~~af~~Ar~~dP~a~L~~Nd 339 (528)
+|++..-+.|++..-++.||..|
T Consensus 200 ~Yl~~l~~~~~~~Gi~VPl~t~d 222 (840)
T PLN03059 200 AYTKWAADMAVKLGTGVPWVMCK 222 (840)
T ss_pred HHHHHHHHHHHHcCCCcceEECC
Confidence 79999999999999899999887
No 30
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=97.08 E-value=0.023 Score=59.32 Aligned_cols=213 Identities=17% Similarity=0.217 Sum_probs=103.5
Q ss_pred cccCCCccCcchH---HHHHHHHHhcCceEEEeeeeeCCCCCCcccccC-------------CChHHHHHHHHHHHHHHH
Q 035723 225 TEPEQGKINYTIA---DQMMEFVRSNQLIARGHNIFWEDPKYTPAWVRN-------------LTGPALQSAVNSRIQSLM 288 (528)
Q Consensus 225 ~Ep~~G~~~~~~~---D~~v~~a~~~gi~vrGH~L~W~~~~~~P~W~~~-------------~~~~~~~~~~~~~I~~v~ 288 (528)
..+..|.|+|+.- ..+++.|+++|+... +..... .|-|+.. | .++-.+.+.+|+.+|+
T Consensus 91 f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f---~aFSNS--PP~~MT~NG~~~g~~~~~~NL-k~d~y~~FA~YLa~Vv 164 (384)
T PF14587_consen 91 FLPADGSYDWDADAGQRWFLKAAKERGVNIF---EAFSNS--PPWWMTKNGSASGGDDGSDNL-KPDNYDAFADYLADVV 164 (384)
T ss_dssp SB-TTS-B-TTSSHHHHHHHHHHHHTT---E---EEE-SS--S-GGGSSSSSSB-S-SSS-SS--TT-HHHHHHHHHHHH
T ss_pred ccCCCCCcCCCCCHHHHHHHHHHHHcCCCeE---EEeecC--CCHHHhcCCCCCCCCcccccc-ChhHHHHHHHHHHHHH
Confidence 3467799999752 247888999998853 222211 3445432 1 1345788999999999
Q ss_pred HHccC---ceeEEEeecccccccccccc--cC--------hHHHHHHHHHHHhhCCCcEEEeecCCcccCCCCcchhHHH
Q 035723 289 NKYKE---EFIHWDVSNEMLHFDFYEQR--LG--------HDATLHFYETAHQSDPLATLFMNEFNVVETCSDENSTVDR 355 (528)
Q Consensus 289 ~rY~g---~v~~WDVvNE~~~~~~~~~~--~G--------~d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~ 355 (528)
.+|+. .|.+-+-+|||.. .|... -| .++++...+..++...++++.+.|-+.++.-.........
T Consensus 165 ~~~~~~GI~f~~IsP~NEP~~--~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea~~~~~l~~~~~~~~~ 242 (384)
T PF14587_consen 165 KHYKKWGINFDYISPFNEPQW--NWAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEAGDWEYLYKTDKNDWG 242 (384)
T ss_dssp HHHHCTT--EEEEE--S-TTS---GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEESSGGGGS---S-TTS
T ss_pred HHHHhcCCccceeCCcCCCCC--CCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecchhhHHHHhhccCCchh
Confidence 99964 7999999999973 25211 11 1345556666777888999999875544322110000000
Q ss_pred HHHHHHHHHhCC---------ceeeEEeeeccCCC-C--CHHHHHHHHHH-HHhC--CCCEEEEeeecCCCC-------C
Q 035723 356 YISRLRELKRGG---------VLMDGIGLESHFTV-P--NLPLMRAILDK-LATL--NLPIWLTEVDISGKL-------D 413 (528)
Q Consensus 356 ~~~~v~~l~~~G---------~~iDgIG~Q~H~~~-p--~~~~i~~~L~~-~a~~--glpI~iTE~dv~~~~-------~ 413 (528)
.-..|+.+-... .--.-|.-|+++.. | .+..+|+.|.. +... |+++|-||+-+-... +
T Consensus 243 r~~~i~~ff~~~s~~yi~~l~~v~~~i~~HsYwt~~~~~~l~~~R~~~~~~~~~~~~~~~~wqtE~~il~~~~~~~~~~g 322 (384)
T PF14587_consen 243 RGNQIEAFFNPDSSTYIGDLPNVPNIISGHSYWTDSPWDDLRDIRKQLADKLDKYSPGLKYWQTEYCILGDNYEIIEGGG 322 (384)
T ss_dssp ---HHHHHHSTTSTT--TT-TTEEEEEEE--TT-SSSHHHHHHHHHHHHHHHHTTSS--EEEE----S----TTT-SSS-
T ss_pred hhhhHHhhcCCCchhhhhccccchhheeecccccCCCHHHHHHHHHHHHHHHHhhCcCCceeeeeeeeccCCcccccCCC
Confidence 112234443322 12355777888765 3 34455655554 3445 899999999887531 1
Q ss_pred -----hhHHHHHHHHHHHHHhcCCCeeEEEEEeeecC
Q 035723 414 -----KETQAVYLEQVLREGFSHPSVNGIMLWTALHP 445 (528)
Q Consensus 414 -----~~~QA~~~~~~~~~~~s~p~v~gi~~Wg~~d~ 445 (528)
.-.=|-|+.+++..=+-+.++.+-.||.-..+
T Consensus 323 ~~~~~~m~~aLy~arviH~DL~~anassW~wW~a~~~ 359 (384)
T PF14587_consen 323 YDRDLGMDTALYVARVIHNDLTYANASSWQWWTAISP 359 (384)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHTS--SEEEEEESEES
T ss_pred cccchhHHHHHHHHHHHHhhhhhcccchhHHHHHhcc
Confidence 01125666777765556678999899987654
No 31
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=97.07 E-value=0.05 Score=64.60 Aligned_cols=212 Identities=17% Similarity=0.183 Sum_probs=127.0
Q ss_pred hhcCeeccCCcccCcccccCCCccCcchHHHHHHHHHhcCceEEEeeeee-CCCCCCcc-cccCCChHHHHHHHHHHHHH
Q 035723 209 ERFNAAVFENELKWYATEPEQGKINYTIADQMMEFVRSNQLIARGHNIFW-EDPKYTPA-WVRNLTGPALQSAVNSRIQS 286 (528)
Q Consensus 209 ~~Fn~vt~eN~~kW~~~Ep~~G~~~~~~~D~~v~~a~~~gi~vrGH~L~W-~~~~~~P~-W~~~~~~~~~~~~~~~~I~~ 286 (528)
.+||+++.. . +....+++++|.+.||-|---.-++ |.. .|. ++ ...++..+.+.+.+++
T Consensus 383 ~g~NaVR~s--H-------------yP~~p~fydlcDe~GilV~dE~~~e~hg~--~~~~~~--~~dp~~~~~~~~~~~~ 443 (1027)
T PRK09525 383 HNFNAVRCS--H-------------YPNHPLWYELCDRYGLYVVDEANIETHGM--VPMNRL--SDDPRWLPAMSERVTR 443 (1027)
T ss_pred CCCCEEEec--C-------------CCCCHHHHHHHHHcCCEEEEecCccccCC--ccccCC--CCCHHHHHHHHHHHHH
Confidence 579999873 1 1233678999999999776332221 211 121 11 1235567788889999
Q ss_pred HHHHccC--ceeEEEeecccccccccccccChHHHHHHHHHHHhhCCCcEEEeecCCcccCCCCcchhHHHHHHHHHHHH
Q 035723 287 LMNKYKE--EFIHWDVSNEMLHFDFYEQRLGHDATLHFYETAHQSDPLATLFMNEFNVVETCSDENSTVDRYISRLRELK 364 (528)
Q Consensus 287 v~~rY~g--~v~~WDVvNE~~~~~~~~~~~G~d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~v~~l~ 364 (528)
++.|.+. .|..|-+-||.-. | .....+++++|+.||.-.+-+.+-.. .. . +.+++-.+.
T Consensus 444 mV~RdrNHPSIi~WSlgNE~~~--------g-~~~~~l~~~~k~~DptRpV~y~~~~~-~~------~---~~Dv~~~my 504 (1027)
T PRK09525 444 MVQRDRNHPSIIIWSLGNESGH--------G-ANHDALYRWIKSNDPSRPVQYEGGGA-DT------A---ATDIICPMY 504 (1027)
T ss_pred HHHhCCCCCEEEEEeCccCCCc--------C-hhHHHHHHHHHhhCCCCcEEECCCCC-CC------C---ccccccCCC
Confidence 9999997 7999999999732 2 23467889999999986665543100 00 0 000000011
Q ss_pred hCCceeeEEeeeccCCCCCHHHHHHHHHHHHhC---CCCEEEEeeecCCCCChhHHHHHHHHHHHHHhcCCCeeEEEEEe
Q 035723 365 RGGVLMDGIGLESHFTVPNLPLMRAILDKLATL---NLPIWLTEVDISGKLDKETQAVYLEQVLREGFSHPSVNGIMLWT 441 (528)
Q Consensus 365 ~~G~~iDgIG~Q~H~~~p~~~~i~~~L~~~a~~---glpI~iTE~dv~~~~~~~~QA~~~~~~~~~~~s~p~v~gi~~Wg 441 (528)
. .++. .+.....+ ...|+.+... ++|+.++|+.=.-..+. -.++++...+.++|.+.|=.+|.
T Consensus 505 ~---~~~~--~~~~~~~~-----~~~~~~~~~~~~~~kP~i~cEY~Hamgn~~----g~l~~yw~~~~~~~~~~GgfIW~ 570 (1027)
T PRK09525 505 A---RVDE--DQPFPAVP-----KWSIKKWISLPGETRPLILCEYAHAMGNSL----GGFAKYWQAFRQYPRLQGGFIWD 570 (1027)
T ss_pred C---Cccc--cccccccc-----hHHHHHHHhcCCCCCCEEEEechhcccCcC----ccHHHHHHHHhcCCCeeEEeeEe
Confidence 1 1110 00000011 1224444433 69999999963221111 13456666667899999999999
Q ss_pred eecC-------CC---------C---C---c---ccccCCCCCCchHHHHHHHHHH
Q 035723 442 ALHP-------NG---------C---Y---Q---MCLTDNNLQNLPAGNIVDKLLK 472 (528)
Q Consensus 442 ~~d~-------~~---------~---~---~---~gL~d~d~~pKPAy~~~~~li~ 472 (528)
+.|. .| + . + -||+..|.+|+|++.-++++++
T Consensus 571 w~Dqg~~~~~~~G~~~~~YGGDfgd~p~d~nFc~dGlv~~dR~p~p~~~E~K~v~q 626 (1027)
T PRK09525 571 WVDQGLTKYDENGNPWWAYGGDFGDTPNDRQFCMNGLVFPDRTPHPALYEAKHAQQ 626 (1027)
T ss_pred ccCcceeeECCCCCEEEEECCcCCCCCCCCCceeceeECCCCCCCccHHHHHhhcC
Confidence 8663 11 1 0 1 2899999999999999998874
No 32
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.01 E-value=0.0021 Score=71.73 Aligned_cols=115 Identities=20% Similarity=0.343 Sum_probs=83.0
Q ss_pred CCceEEeecCCccCChh----HHHHHHhhcCeeccCCcccCcccccCCCccCcchHHHH-HHHHHhcCceEEEeeeeeCC
Q 035723 186 DFPFGSAIASTILGNLP----YQKWFVERFNAAVFENELKWYATEPEQGKINYTIADQM-MEFVRSNQLIARGHNIFWED 260 (528)
Q Consensus 186 ~F~fG~av~~~~~~~~~----y~~~~~~~Fn~vt~eN~~kW~~~Ep~~G~~~~~~~D~~-v~~a~~~gi~vrGH~L~W~~ 260 (528)
-+..|.+.++....... .+.+-..+||.++.. .+-|..+||++|+|+|+..|.. ++-|.+.|+.+.--+- .
T Consensus 15 ~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig-~faW~~~eP~eG~fdf~~~D~~~l~~a~~~Gl~vil~t~--P- 90 (673)
T COG1874 15 ILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIG-YFAWNLHEPEEGKFDFTWLDEIFLERAYKAGLYVILRTG--P- 90 (673)
T ss_pred eEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEee-eEEeeccCccccccCcccchHHHHHHHHhcCceEEEecC--C-
Confidence 35678899888766533 333445789999992 4999999999999999999998 9999999998863330 0
Q ss_pred CCCCcccccC------------------------CChHHHHHHHHHHHHHHHHH-ccC--ceeEEEeeccc
Q 035723 261 PKYTPAWVRN------------------------LTGPALQSAVNSRIQSLMNK-YKE--EFIHWDVSNEM 304 (528)
Q Consensus 261 ~~~~P~W~~~------------------------~~~~~~~~~~~~~I~~v~~r-Y~g--~v~~WDVvNE~ 304 (528)
....|.|+.. .+.+-.++.+...++.++.| |+. -|..|-+=||=
T Consensus 91 ~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY 161 (673)
T COG1874 91 TGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEY 161 (673)
T ss_pred CCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCcc
Confidence 1134555532 01123566667777788889 874 78999999984
No 33
>PF04862 DUF642: Protein of unknown function (DUF642); InterPro: IPR006946 This family contains a conserved region found in a number of uncharacterised plant proteins.
Probab=96.75 E-value=0.033 Score=51.58 Aligned_cols=113 Identities=19% Similarity=0.221 Sum_probs=73.5
Q ss_pred ccCCCceeecCCCCceEEEEecCCCCCCCceEEEEEeCCCEEEEEEEEEEccCCCcEEEEEEEEeCCeeEEeeeEEEeCC
Q 035723 19 PLYNGGMLKNHPPENFSSIAHFSTGFYTPAFILHNLTPGTIYCFSIWLKIEGANSAHVRASLKTENSVYNCVGSAAAKQG 98 (528)
Q Consensus 19 ~~~~gg~~~~~~g~~~sl~vt~Rt~~w~G~~~~~~l~~G~~Y~vSawVk~~~g~~~~~~vt~~~~~g~y~~~~~~~v~~~ 98 (528)
..+.||+......|++++-. ++.+. +.|.+...+|++|++++.+.-.......+.|.+... .............+
T Consensus 44 ~~~~g~~~~~~p~G~~aveL-g~~~~---I~Q~~~t~~G~~Y~LtF~~~~~~~~~~~l~V~v~~~-~~~~~~~~~~~~~~ 118 (159)
T PF04862_consen 44 GHFQGGMYFAVPEGKQAVEL-GNEGS---ISQTFTTVPGSTYTLTFSLARNCAQSESLSVSVGGQ-FSFVVTIQTSYGSG 118 (159)
T ss_pred CCccCceeeeCCCCceEEEc-CCCce---EEEEEEccCCCEEEEEEEecCCCCCCccEEEEEecc-cceEEEeeccCCCC
Confidence 33446665555666666777 55544 889999999999999999992112233555544432 22222222333456
Q ss_pred CEEEEEeEEEecCCCCeeEEEEEcC---CCCcceEEEeccccC
Q 035723 99 CWSFLKGGFVLDSPSNLSILFFQNS---DDRDINIAVASASLQ 138 (528)
Q Consensus 99 ~Wt~l~g~~t~~~~~~~~~ly~E~~---~~~~~~f~vDd~~l~ 138 (528)
.|+...-.|+. .. +...|.+..+ +++..==+||||+|+
T Consensus 119 ~w~~~s~~F~A-~~-t~~~l~f~~~~~~~d~~cGp~iDnV~vk 159 (159)
T PF04862_consen 119 GWDTYSFTFTA-SS-TRITLTFHNPGMESDSACGPVIDNVSVK 159 (159)
T ss_pred CcEEEEEEEEe-CC-CEEEEEEECCCccCCCCceeEEEEEEeC
Confidence 79999999998 44 6788877654 245677789998874
No 34
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=96.47 E-value=0.024 Score=59.06 Aligned_cols=234 Identities=17% Similarity=0.177 Sum_probs=147.0
Q ss_pred hcCeeccCCcccCcccccCCCccCcchHHHHHHHHHhcCceEEEeeeeeCCCCCC-cccccCCChH-HHHHHHHHHHHHH
Q 035723 210 RFNAAVFENELKWYATEPEQGKINYTIADQMMEFVRSNQLIARGHNIFWEDPKYT-PAWVRNLTGP-ALQSAVNSRIQSL 287 (528)
Q Consensus 210 ~Fn~vt~eN~~kW~~~Ep~~G~~~~~~~D~~v~~a~~~gi~vrGH~L~W~~~~~~-P~W~~~~~~~-~~~~~~~~~I~~v 287 (528)
.||.|+.- --|...+. .=-|+|+..|++++-..+.|+++----|.|+..... -.|-.+.+++ ...+++..+|..+
T Consensus 18 ~v~yi~~~--~v~h~~~q-~~~~~~t~~d~i~d~~~~~~~~~ie~~l~~~~l~~~~~~wq~n~~~~~~~~dl~~~fl~h~ 94 (428)
T COG3664 18 QVNYIRRH--GVWHVNAQ-KLFYPFTYIDEIIDTLLDLGLDLIELFLIWNNLNTKEHQWQLNVDDPKSVFDLIAAFLKHV 94 (428)
T ss_pred ceeeehhc--ceeeeeec-cccCChHHHHHHHHHHHHhccHHHHHhhcccchhhhhhhcccccCCcHhHHHHHHHHHHHH
Confidence 36666543 23332222 456788999999999999887765445677753221 2465554444 4788888999999
Q ss_pred HHHccC---ceeEEEeecccccccccccccChHHHHHHHHHHHhhCCCcEEEeecCCcccCCCCcchhHHHHHHHHHHHH
Q 035723 288 MNKYKE---EFIHWDVSNEMLHFDFYEQRLGHDATLHFYETAHQSDPLATLFMNEFNVVETCSDENSTVDRYISRLRELK 364 (528)
Q Consensus 288 ~~rY~g---~v~~WDVvNE~~~~~~~~~~~G~d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~v~~l~ 364 (528)
+.||+- +.....++|||... .--.+|.+.-+..||+.+|...|--. .+ .... ..+.
T Consensus 95 ~~~vg~e~v~kw~f~~~~~pn~~-----ad~~eyfk~y~~~a~~~~p~i~vg~~-w~-----------~e~l----~~~~ 153 (428)
T COG3664 95 IRRVGVEFVRKWPFYSPNEPNLL-----ADKQEYFKLYDATARQRAPSIQVGGS-WN-----------TERL----HEFL 153 (428)
T ss_pred HHHhChhheeecceeecCCCCcc-----cchHHHHHHHHhhhhccCcceeeccc-cC-----------cHHH----hhhh
Confidence 999884 34566899998642 22257888888999999999887420 11 1111 2233
Q ss_pred hCCceeeEEeeeccC------CCCC------------HHHHHHHHHHHH--hCCCCEEEEeeecCCCCC-----hhHHHH
Q 035723 365 RGGVLMDGIGLESHF------TVPN------------LPLMRAILDKLA--TLNLPIWLTEVDISGKLD-----KETQAV 419 (528)
Q Consensus 365 ~~G~~iDgIG~Q~H~------~~p~------------~~~i~~~L~~~a--~~glpI~iTE~dv~~~~~-----~~~QA~ 419 (528)
..+.+||=+-.+... ..|+ ++..+.+.+++. .+|+|..+||..-.+... .-..|.
T Consensus 154 k~~d~idfvt~~a~~~~av~~~~~~~~~~~l~~~~~~l~~~r~~~d~i~~~~~~~pl~~~~wntlt~~~~~~n~sy~raa 233 (428)
T COG3664 154 KKADEIDFVTELANSVDAVDFSTPGAEEVKLSELKRTLEDLRGLKDLIQHHSLGLPLLLTNWNTLTGPREPTNGSYVRAA 233 (428)
T ss_pred hccCcccceeecccccccccccCCCchhhhhhhhhhhhhHHHHHHHHHHhccCCCcceeecccccCCCccccCceeehHH
Confidence 345566666555432 2221 233444444443 457899999998876422 223466
Q ss_pred HHHHHHHHHhcCCCeeEEEEEeeecCC---C--C----CcccccCCCCCCchHHHHHHH
Q 035723 420 YLEQVLREGFSHPSVNGIMLWTALHPN---G--C----YQMCLTDNNLQNLPAGNIVDK 469 (528)
Q Consensus 420 ~~~~~~~~~~s~p~v~gi~~Wg~~d~~---~--~----~~~gL~d~d~~pKPAy~~~~~ 469 (528)
++-+.|+.+- +-|.++..|+..|.. | + ..++|++.-.-.||||-+..-
T Consensus 234 ~i~~~Lr~~g--~~v~a~~yW~~sdl~e~~g~~~~~~~~gfel~~~~~~rrpa~~~~l~ 290 (428)
T COG3664 234 YIMRLLREAG--SPVDAFGYWTNSDLHEEHGPPEAPFVGGFELFAPYGGRRPAWMAALF 290 (428)
T ss_pred HHHHHHHhcC--ChhhhhhhhhcccccccCCCcccccccceeeecccccchhHHHHHHH
Confidence 6655555432 569999999987753 2 1 257888888788999976543
No 35
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=95.63 E-value=0.02 Score=60.60 Aligned_cols=223 Identities=13% Similarity=0.129 Sum_probs=142.5
Q ss_pred CcchHHHHHHHHHhcCceEEEeeee-eCCC---CCCcccccCCC------hHHHHHHHHHHHHHHHHHccC--ceeEEEe
Q 035723 233 NYTIADQMMEFVRSNQLIARGHNIF-WEDP---KYTPAWVRNLT------GPALQSAVNSRIQSLMNKYKE--EFIHWDV 300 (528)
Q Consensus 233 ~~~~~D~~v~~a~~~gi~vrGH~L~-W~~~---~~~P~W~~~~~------~~~~~~~~~~~I~~v~~rY~g--~v~~WDV 300 (528)
++..++.+++-|..++|++.-..++ |..- .+.=.|.-..+ ++..+...++||+.++.-||- -|-.|..
T Consensus 65 ~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipwag~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l 144 (587)
T COG3934 65 NVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPWAGEQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWAL 144 (587)
T ss_pred cHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeecCCCCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHh
Confidence 3566788999999999998632222 3221 11234553222 234677789999999998885 5789999
Q ss_pred ecccccccccccccCh---HHHHHHHHHHHhhCCCcEEEeecCCcccCCCCcchhHHHHHHHHHHHHhCCceeeEEeeec
Q 035723 301 SNEMLHFDFYEQRLGH---DATLHFYETAHQSDPLATLFMNEFNVVETCSDENSTVDRYISRLRELKRGGVLMDGIGLES 377 (528)
Q Consensus 301 vNE~~~~~~~~~~~G~---d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~v~~l~~~G~~iDgIG~Q~ 377 (528)
-||+.-..+ ..+. ++...++.++|..||+-.+-.+|-.- ++.. .++.+ .++ .+|--+.|.
T Consensus 145 ~Ne~lv~~p---~s~N~f~~w~~emy~yiK~ldd~hlvsvGD~~s---p~~~-~~pyN---------~r~-~vDya~~hL 207 (587)
T COG3934 145 RNEPLVEAP---ISVNNFWDWSGEMYAYIKWLDDGHLVSVGDPAS---PWPQ-YAPYN---------ARF-YVDYAANHL 207 (587)
T ss_pred cCCcccccc---CChhHHHHHHHHHHHHhhccCCCCeeecCCcCC---cccc-cCCcc---------cce-eeccccchh
Confidence 999753211 1122 56788999999999999888887432 1110 01110 011 233334433
Q ss_pred --cCCC-C----CHHHHHHHHHHHHhCC-CCEEEEeeecCCCC-ChhHHHHHHHHHHHHHhcCCCeeEEEEEeeecCC--
Q 035723 378 --HFTV-P----NLPLMRAILDKLATLN-LPIWLTEVDISGKL-DKETQAVYLEQVLREGFSHPSVNGIMLWTALHPN-- 446 (528)
Q Consensus 378 --H~~~-p----~~~~i~~~L~~~a~~g-lpI~iTE~dv~~~~-~~~~QA~~~~~~~~~~~s~p~v~gi~~Wg~~d~~-- 446 (528)
|... | +.......|+-....| +|+-+-|++.+++. .+..||.++-.-+ ++.. +-.|-.+|.|.|-.
T Consensus 208 Y~hyd~sl~~r~s~~yg~~~l~i~~~~g~~pV~leefGfsta~g~e~s~ayfiw~~l--al~~-ggdGaLiwclsdf~~g 284 (587)
T COG3934 208 YRHYDTSLVSRVSTVYGKPYLDIPTIMGWQPVNLEEFGFSTAFGQENSPAYFIWIRL--ALDT-GGDGALIWCLSDFHLG 284 (587)
T ss_pred hhhccCChhheeeeeecchhhccchhcccceeeccccCCcccccccccchhhhhhhh--HHhh-cCCceEEEEecCCccC
Confidence 2222 2 1223344677777889 99999999999853 4566666553333 5554 45677899986532
Q ss_pred ------CC----CcccccCCCCCCchHHHHHHHHHHHhc
Q 035723 447 ------GC----YQMCLTDNNLQNLPAGNIVDKLLKEWQ 475 (528)
Q Consensus 447 ------~~----~~~gL~d~d~~pKPAy~~~~~li~ew~ 475 (528)
+| ..+|+.++|..+|-++..+..+..+|.
T Consensus 285 sdd~ey~w~p~el~fgiIradgpek~~a~~~~~fsn~~k 323 (587)
T COG3934 285 SDDSEYTWGPMELEFGIIRADGPEKIDAMTLHIFSNNWK 323 (587)
T ss_pred CCCCCCccccccceeeeecCCCchhhhHHHHHHhccccc
Confidence 22 368999999999999999998887665
No 36
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=95.02 E-value=2.4 Score=43.79 Aligned_cols=247 Identities=13% Similarity=0.102 Sum_probs=131.5
Q ss_pred HHhcCceEEEeeeeeCCCCCCcccccC---CC-------hHHHHHHHHHHHHHHHHHccC---ceeEEEeeccccccc--
Q 035723 244 VRSNQLIARGHNIFWEDPKYTPAWVRN---LT-------GPALQSAVNSRIQSLMNKYKE---EFIHWDVSNEMLHFD-- 308 (528)
Q Consensus 244 a~~~gi~vrGH~L~W~~~~~~P~W~~~---~~-------~~~~~~~~~~~I~~v~~rY~g---~v~~WDVvNE~~~~~-- 308 (528)
+..+|+.|-.-+ |. .|.|+.. +. ..+-...+.+|+.+.+..|+. .+++--|=|||.-..
T Consensus 111 ~in~g~ivfASP--Ws----pPa~Mktt~~~ngg~~g~Lk~e~Ya~yA~~l~~fv~~m~~nGvnlyalSVQNEPd~~p~~ 184 (433)
T COG5520 111 AINPGMIVFASP--WS----PPASMKTTNNRNGGNAGRLKYEKYADYADYLNDFVLEMKNNGVNLYALSVQNEPDYAPTY 184 (433)
T ss_pred hcCCCcEEEecC--CC----CchhhhhccCcCCccccccchhHhHHHHHHHHHHHHHHHhCCCceeEEeeccCCcccCCC
Confidence 455666665433 53 5788863 11 123466788888888887774 689999999997542
Q ss_pred ccccccChHHHHHHHHHHHhhCCCcEEEeecCCcccCCCCcchhHHHHHHHHHHHHhCCceeeEEeeeccCCCCCHHHHH
Q 035723 309 FYEQRLGHDATLHFYETAHQSDPLATLFMNEFNVVETCSDENSTVDRYISRLRELKRGGVLMDGIGLESHFTVPNLPLMR 388 (528)
Q Consensus 309 ~~~~~~G~d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~v~~l~~~G~~iDgIG~Q~H~~~p~~~~i~ 388 (528)
.|.--+..+..+-+-+.++-..-.+++++-|-.- ..+. . .+-.+ .+=+ +=+.+|++|+|.+-+. +...-
T Consensus 185 d~~~wtpQe~~rF~~qyl~si~~~~rV~~pes~~-~~~~-~---~dp~l---nDp~-a~a~~~ilg~H~Ygg~--v~~~p 253 (433)
T COG5520 185 DWCWWTPQEELRFMRQYLASINAEMRVIIPESFK-DLPN-M---SDPIL---NDPK-ALANMDILGTHLYGGQ--VSDQP 253 (433)
T ss_pred CcccccHHHHHHHHHHhhhhhccccEEecchhcc-cccc-c---ccccc---cCHh-HhcccceeEeeecccc--cccch
Confidence 2222233455555555555556678888765332 1110 0 00000 0000 1136899999776543 11112
Q ss_pred HHHHHHHhCCCCEEEEeeecCCCC--ChhHHHHHHHHHHHHHhcCCCeeEEEEEeeecCCC--CCc---------ccccC
Q 035723 389 AILDKLATLNLPIWLTEVDISGKL--DKETQAVYLEQVLREGFSHPSVNGIMLWTALHPNG--CYQ---------MCLTD 455 (528)
Q Consensus 389 ~~L~~~a~~glpI~iTE~dv~~~~--~~~~QA~~~~~~~~~~~s~p~v~gi~~Wg~~d~~~--~~~---------~gL~d 455 (528)
..|.+.-..|+.||.||.-.+... +..+.+-.+...+..+.-..++.|+.||.+.-+.+ ..+ ++-|-
T Consensus 254 ~~lak~~~~gKdlwmte~y~~esd~~s~dr~~~~~~~hi~~gm~~gg~~ayv~W~i~~~~~~~~~~gg~~k~~y~ma~fs 333 (433)
T COG5520 254 YPLAKQKPAGKDLWMTECYPPESDPNSADREALHVALHIHIGMTEGGFQAYVWWNIRLDYGGGPNHGGNSKRGYCMAHFS 333 (433)
T ss_pred hhHhhCCCcCCceEEeecccCCCCCCcchHHHHHHHHHHHhhccccCccEEEEEEEeeccCCCcCCCcccccceeEeeee
Confidence 234444455999999999877531 12211222223333343346899999999965432 111 12221
Q ss_pred CCCCCchHHHHHHHHHHHhcCCceeeeecCCceEEEeeeeeeEEEEEEeCC---eeeEEEEEEecCCCe
Q 035723 456 NNLQNLPAGNIVDKLLKEWQTGEVTGHTDGHGSFSFYGFLGEYTVSVKYGN---RTANSTFSLCQGDET 521 (528)
Q Consensus 456 ~d~~pKPAy~~~~~li~ew~t~~~~~~t~~~G~~~~rgf~G~y~v~v~~~~---~~~~~~~~l~~~~~~ 521 (528)
.+-+ |-|. .++.+-+..|...+..|.|.-.|-+-..+ ....++|.+-..+..
T Consensus 334 kf~q--~gy~------------rldat~sp~~nvyvsayvg~nkvvivaink~~~~vnq~f~fqNpdgs 388 (433)
T COG5520 334 KFVQ--NGYV------------RLDATKSPYGNVYVSAYVGPNKVVIVAINKGTYPVNQSFNFQNPDGS 388 (433)
T ss_pred eecc--CCce------------EEecccCccceEEEEEEecCCcEEEEeecccccccceeEEEECCCCC
Confidence 1111 1111 13344455666777777777555443332 346667766665543
No 37
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=95.02 E-value=0.074 Score=42.81 Aligned_cols=49 Identities=31% Similarity=0.386 Sum_probs=34.5
Q ss_pred eeeeecCCceEEEe-eeeeeEEEEEEeCCe-eeEE-EEEEecCCCeeEEEEEC
Q 035723 479 VTGHTDGHGSFSFY-GFLGEYTVSVKYGNR-TANS-TFSLCQGDETRHVTIRV 528 (528)
Q Consensus 479 ~~~~t~~~G~~~~r-gf~G~y~v~v~~~~~-~~~~-~~~l~~~~~~~~~~i~~ 528 (528)
....||++|.|.|+ ...|.|.|.+++.+. ...+ .+.|..+..+ .+.|.|
T Consensus 30 ~~~~Td~~G~f~~~~l~~g~Y~l~v~~~g~~~~~~~~v~v~~~~~~-~~~i~L 81 (82)
T PF13620_consen 30 YTTTTDSDGRFSFEGLPPGTYTLRVSAPGYQPQTQENVTVTAGQTT-TVDITL 81 (82)
T ss_dssp CEEE--TTSEEEEEEE-SEEEEEEEEBTTEE-EEEEEEEESSSSEE-E--EEE
T ss_pred EEEEECCCceEEEEccCCEeEEEEEEECCcceEEEEEEEEeCCCEE-EEEEEE
Confidence 47899999999999 777999999999983 4444 6889988764 556553
No 38
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=94.62 E-value=0.21 Score=50.82 Aligned_cols=224 Identities=14% Similarity=0.152 Sum_probs=101.4
Q ss_pred CceEEeecCC--ccCCh---hHHHHH-HhhcCeeccCCcccCccc--------cc----CCCccCc--------chHHHH
Q 035723 187 FPFGSAIAST--ILGNL---PYQKWF-VERFNAAVFENELKWYAT--------EP----EQGKINY--------TIADQM 240 (528)
Q Consensus 187 F~fG~av~~~--~~~~~---~y~~~~-~~~Fn~vt~eN~~kW~~~--------Ep----~~G~~~~--------~~~D~~ 240 (528)
|.+|...=.- .++.. .|.+.. .+.||.|.+.---+|... .| .++.++| +.+|++
T Consensus 14 f~lgdT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~ 93 (289)
T PF13204_consen 14 FWLGDTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRR 93 (289)
T ss_dssp -EEEEE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHH
T ss_pred eehhHHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHH
Confidence 7888543211 12222 234333 468998877433354433 11 1122343 458999
Q ss_pred HHHHHhcCceEEEeeeeeCCCCCC-cccccC---CChHHHHHHHHHHHHHHHHHccCce-eEEEeecccccccccccccC
Q 035723 241 MEFVRSNQLIARGHNIFWEDPKYT-PAWVRN---LTGPALQSAVNSRIQSLMNKYKEEF-IHWDVSNEMLHFDFYEQRLG 315 (528)
Q Consensus 241 v~~a~~~gi~vrGH~L~W~~~~~~-P~W~~~---~~~~~~~~~~~~~I~~v~~rY~g~v-~~WDVvNE~~~~~~~~~~~G 315 (528)
|+.|.++||.+- -+++|+.. +. ..|-.. +++ +..+.|++-|+.||+..- .-|.+-||- +....-
T Consensus 94 i~~a~~~Gi~~~-lv~~wg~~-~~~~~Wg~~~~~m~~----e~~~~Y~~yv~~Ry~~~~NviW~l~gd~-----~~~~~~ 162 (289)
T PF13204_consen 94 IEKANELGIEAA-LVPFWGCP-YVPGTWGFGPNIMPP----ENAERYGRYVVARYGAYPNVIWILGGDY-----FDTEKT 162 (289)
T ss_dssp HHHHHHTT-EEE-EESS-HHH-HH-------TTSS-H----HHHHHHHHHHHHHHTT-SSEEEEEESSS-------TTSS
T ss_pred HHHHHHCCCeEE-EEEEECCc-cccccccccccCCCH----HHHHHHHHHHHHHHhcCCCCEEEecCcc-----CCCCcC
Confidence 999999999995 67789432 22 347652 233 347889999999999862 469999998 222333
Q ss_pred hHHHHHHHHHHHhhCCCcEEEeecCCcccCCCCcchhHHHHHHHHHHHHhCCceeeEEeeec-cCCC-C-CHHHHHHHHH
Q 035723 316 HDATLHFYETAHQSDPLATLFMNEFNVVETCSDENSTVDRYISRLRELKRGGVLMDGIGLES-HFTV-P-NLPLMRAILD 392 (528)
Q Consensus 316 ~d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~v~~l~~~G~~iDgIG~Q~-H~~~-p-~~~~i~~~L~ 392 (528)
.++...+.+.+|+.||...+-+-..+. ......| .++ --+|-+-+|+ |-.. . ....+-. -.
T Consensus 163 ~~~w~~~~~~i~~~dp~~L~T~H~~~~-------~~~~~~~-------~~~-~Wldf~~~Qsgh~~~~~~~~~~~~~-~~ 226 (289)
T PF13204_consen 163 RADWDAMARGIKENDPYQLITIHPCGR-------TSSPDWF-------HDE-PWLDFNMYQSGHNRYDQDNWYYLPE-EF 226 (289)
T ss_dssp HHHHHHHHHHHHHH--SS-EEEEE-BT-------EBTHHHH-------TT--TT--SEEEB--S--TT--THHHH---HH
T ss_pred HHHHHHHHHHHHhhCCCCcEEEeCCCC-------CCcchhh-------cCC-CcceEEEeecCCCcccchHHHHHhh-hh
Confidence 578889999999999988322322211 0112222 111 2478888885 6432 1 1111211 12
Q ss_pred HHH-hCCCCEEEEeeecCC---CCCh---hHH-HHHHHHHHHHHhcCCCeeEEE
Q 035723 393 KLA-TLNLPIWLTEVDISG---KLDK---ETQ-AVYLEQVLREGFSHPSVNGIM 438 (528)
Q Consensus 393 ~~a-~~glpI~iTE~dv~~---~~~~---~~Q-A~~~~~~~~~~~s~p~v~gi~ 438 (528)
.++ ...+||..-|...-. .... ... .+.-+++...+++-. -.|++
T Consensus 227 ~~~~~p~KPvin~Ep~YEg~~~~~~~~~~~~~~~dvrr~aw~svlaGa-~aG~t 279 (289)
T PF13204_consen 227 DYRRKPVKPVINGEPCYEGIPYSRWGYNGRFSAEDVRRRAWWSVLAGA-YAGHT 279 (289)
T ss_dssp HHTSSS---EEESS---BT-BTTSS-TS-B--HHHHHHHHHHHHHCT---SEEE
T ss_pred hhhhCCCCCEEcCcccccCCCCCcCcccCCCCHHHHHHHHHHHHhcCC-Ccccc
Confidence 333 458999999976532 1111 122 244455666667642 24554
No 39
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=94.09 E-value=0.46 Score=50.80 Aligned_cols=119 Identities=13% Similarity=0.096 Sum_probs=71.7
Q ss_pred HhhcCeeccCCcccCcccccC----CCcc---CcchHHHHHHHHHhcCceEE--EeeeeeCCCCCCcccccC-CC-hHHH
Q 035723 208 VERFNAAVFENELKWYATEPE----QGKI---NYTIADQMMEFVRSNQLIAR--GHNIFWEDPKYTPAWVRN-LT-GPAL 276 (528)
Q Consensus 208 ~~~Fn~vt~eN~~kW~~~Ep~----~G~~---~~~~~D~~v~~a~~~gi~vr--GH~L~W~~~~~~P~W~~~-~~-~~~~ 276 (528)
..+||.||++ +-|..+++. |... .+...|++|++|++.||.|. -|..-+........|... .. .++.
T Consensus 84 ~~G~n~VRiP--i~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~~~~~~~ 161 (407)
T COG2730 84 SAGFNAVRIP--IGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDYKEENEN 161 (407)
T ss_pred HcCCcEEEcc--cchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccccccchh
Confidence 4789999998 775555443 2222 11257899999999999985 132221111112344322 11 2345
Q ss_pred HHHHHHHHHHHHHHccC--ceeEEEeeccccc---ccccccccChHHHHHHHHHHH-hhCCCc
Q 035723 277 QSAVNSRIQSLMNKYKE--EFIHWDVSNEMLH---FDFYEQRLGHDATLHFYETAH-QSDPLA 333 (528)
Q Consensus 277 ~~~~~~~I~~v~~rY~g--~v~~WDVvNE~~~---~~~~~~~~G~d~~~~af~~Ar-~~dP~a 333 (528)
.++..+..+.++.||+. .|...|++|||.. ...|.... ..|+..+| +....+
T Consensus 162 ~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~~~~~~~w~~~~-----~~A~~~v~~~i~~~~ 219 (407)
T COG2730 162 VEATIDIWKFIANRFKNYDTVIGFELINEPNGIVTSETWNGGD-----DEAYDVVRNAILSNA 219 (407)
T ss_pred HHHHHHHHHHHHHhccCCCceeeeeeecCCcccCCccccccch-----HHHHHHHHhhhhhcC
Confidence 56777788899999997 5777899999973 33343222 56666664 334443
No 40
>cd06263 MAM Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.
Probab=93.20 E-value=1.9 Score=39.17 Aligned_cols=106 Identities=18% Similarity=0.241 Sum_probs=67.3
Q ss_pred CCCceEEEEecCCCCCCCceEEE---EEeCC-CEEEEEEEEEEccCCCcEEEEEEEEeCC-eeEEeeeEEEe-CCCEEEE
Q 035723 30 PPENFSSIAHFSTGFYTPAFILH---NLTPG-TIYCFSIWLKIEGANSAHVRASLKTENS-VYNCVGSAAAK-QGCWSFL 103 (528)
Q Consensus 30 ~g~~~sl~vt~Rt~~w~G~~~~~---~l~~G-~~Y~vSawVk~~~g~~~~~~vt~~~~~g-~y~~~~~~~v~-~~~Wt~l 103 (528)
.+|.| |++...... .|-.-.+ .|..- ....+++|-++.+.....++|.++..++ ....+-+.... .+.|.+.
T Consensus 41 ~~G~y-l~~~~s~~~-~~~~A~L~SP~~~~~~~~~Cl~F~y~~~g~~~g~L~V~v~~~~~~~~~~lw~~~~~~~~~W~~~ 118 (157)
T cd06263 41 GSGHY-LYVESSSGR-EGQKARLLSPLLPPPRSSHCLSFWYHMYGSGVGTLNVYVREEGGGLGTLLWSASGGQGNQWQEA 118 (157)
T ss_pred CccEE-EEEECCCCC-CCCEEEEEcccCcCCCCCeEEEEEEEecCCCCCeEEEEEEeCCCCcceEEEEEECCCCCeeEEE
Confidence 46777 888755444 3333222 33332 5677999998887666677776665554 23333333222 5889988
Q ss_pred EeEEEecCCCCeeEEEEEcCC--CCcceEEEeccccCc
Q 035723 104 KGGFVLDSPSNLSILFFQNSD--DRDINIAVASASLQP 139 (528)
Q Consensus 104 ~g~~t~~~~~~~~~ly~E~~~--~~~~~f~vDd~~l~~ 139 (528)
.-.+.. ....++|-||+.. ...-++-||||+|.+
T Consensus 119 ~v~l~~--~~~~fqi~fe~~~~~~~~g~IAIDdI~l~~ 154 (157)
T cd06263 119 EVTLSA--SSKPFQVVFEGVRGSGSRGDIALDDISLSP 154 (157)
T ss_pred EEEECC--CCCceEEEEEEEECCCccccEEEeEEEEec
Confidence 776544 3357888888641 356899999999865
No 41
>PLN02161 beta-amylase
Probab=91.83 E-value=0.86 Score=49.14 Aligned_cols=63 Identities=11% Similarity=0.301 Sum_probs=50.4
Q ss_pred HHHHHhhcCeeccCCcccCccccc-CCCccCcchHHHHHHHHHhcCceEEEeeeeeCC------C---CCCccccc
Q 035723 204 QKWFVERFNAAVFENELKWYATEP-EQGKINYTIADQMMEFVRSNQLIARGHNIFWED------P---KYTPAWVR 269 (528)
Q Consensus 204 ~~~~~~~Fn~vt~eN~~kW~~~Ep-~~G~~~~~~~D~~v~~a~~~gi~vrGH~L~W~~------~---~~~P~W~~ 269 (528)
+.+-.....-|..+ .=|+-+|+ .|++|||+-..++++.+++.||+++- +|-.|. . -..|.|+.
T Consensus 124 ~~LK~~GVdGVmvD--VWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKlq~-vmSFHqCGGNvGd~~~IpLP~WV~ 196 (531)
T PLN02161 124 KALKLAGVHGIAVE--VWWGIVERFSPLEFKWSLYEELFRLISEAGLKLHV-ALCFHSNMHLFGGKGGISLPLWIR 196 (531)
T ss_pred HHHHHcCCCEEEEE--eeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeEEE-EEEecccCCCCCCccCccCCHHHH
Confidence 34444678888887 89999997 89999999999999999999999983 556663 0 03899985
No 42
>PLN00197 beta-amylase; Provisional
Probab=91.30 E-value=1 Score=49.01 Aligned_cols=63 Identities=14% Similarity=0.292 Sum_probs=50.2
Q ss_pred HHHHhhcCeeccCCcccCccccc-CCCccCcchHHHHHHHHHhcCceEEEeeeeeCC------C---CCCcccccC
Q 035723 205 KWFVERFNAAVFENELKWYATEP-EQGKINYTIADQMMEFVRSNQLIARGHNIFWED------P---KYTPAWVRN 270 (528)
Q Consensus 205 ~~~~~~Fn~vt~eN~~kW~~~Ep-~~G~~~~~~~D~~v~~a~~~gi~vrGH~L~W~~------~---~~~P~W~~~ 270 (528)
.+-..+..-|..+ .=|+-+|+ .|++|||+-..++++.+++.||+++- +|-+|. . -..|.|+..
T Consensus 135 ~LK~~GVdGVmvD--vWWGiVE~~~p~~YdWsgY~~L~~mvr~~GLKlq~-VmSFHqCGGNVGD~~~IpLP~WV~~ 207 (573)
T PLN00197 135 ALKSAGVEGIMMD--VWWGLVERESPGVYNWGGYNELLEMAKRHGLKVQA-VMSFHQCGGNVGDSCTIPLPKWVVE 207 (573)
T ss_pred HHHHcCCCEEEEe--eeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEE-EEEecccCCCCCCcccccCCHHHHH
Confidence 3334678888887 89999997 89999999999999999999999983 566663 0 138999853
No 43
>PLN02803 beta-amylase
Probab=90.94 E-value=1.2 Score=48.41 Aligned_cols=63 Identities=14% Similarity=0.202 Sum_probs=50.1
Q ss_pred HHHHHhhcCeeccCCcccCccccc-CCCccCcchHHHHHHHHHhcCceEEEeeeeeCC-------C--CCCccccc
Q 035723 204 QKWFVERFNAAVFENELKWYATEP-EQGKINYTIADQMMEFVRSNQLIARGHNIFWED-------P--KYTPAWVR 269 (528)
Q Consensus 204 ~~~~~~~Fn~vt~eN~~kW~~~Ep-~~G~~~~~~~D~~v~~a~~~gi~vrGH~L~W~~-------~--~~~P~W~~ 269 (528)
+.+-..+..-|..+ .=|+-+|+ .|++|||+-..++++.+++.||+++- +|-.|. . -..|.|+.
T Consensus 114 ~~LK~~GVdGVmvD--VWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKlq~-vmSFHqCGGNVGD~~~IpLP~WV~ 186 (548)
T PLN02803 114 MALRSAGVEGVMVD--AWWGLVEKDGPMKYNWEGYAELVQMVQKHGLKLQV-VMSFHQCGGNVGDSCSIPLPPWVL 186 (548)
T ss_pred HHHHHcCCCEEEEE--eeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEE-EEEecccCCCCCCcccccCCHHHH
Confidence 34444678888887 89999998 59999999999999999999999984 556663 0 13899985
No 44
>smart00137 MAM Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others). Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.
Probab=90.86 E-value=4.6 Score=37.05 Aligned_cols=104 Identities=16% Similarity=0.210 Sum_probs=63.6
Q ss_pred CceEEEEecCCCCCCCceEEE---EEeCC-CEEEEEEEEEEccCCCcEEEEEEEEeCCee-EEeeeEEE-eCCCEEEEEe
Q 035723 32 ENFSSIAHFSTGFYTPAFILH---NLTPG-TIYCFSIWLKIEGANSAHVRASLKTENSVY-NCVGSAAA-KQGCWSFLKG 105 (528)
Q Consensus 32 ~~~sl~vt~Rt~~w~G~~~~~---~l~~G-~~Y~vSawVk~~~g~~~~~~vt~~~~~g~y-~~~~~~~v-~~~~Wt~l~g 105 (528)
|.| |++..+...- |-.-.| .+..- ..+.+++|-++.+.....+.|.++..++.. ..+-+... ..+.|.+-+-
T Consensus 47 G~y-~~v~~~~~~~-g~~A~L~SP~~~~~~~~~cl~F~Y~m~G~~~g~L~V~~~~~~~~~~~~lw~~~g~~~~~W~~~~v 124 (161)
T smart00137 47 GHF-MFFETSSGAP-GQTARLLSPPLYENRSTHCLTFWYYMYGSGSGTLNVYVRENNGSQDTLLWSRSGTQGGQWLQAEV 124 (161)
T ss_pred eeE-EEEECCCCCC-CCEEEEECCcccCCCCCeEEEEEEEecCCCCCEEEEEEEeCCCCCceEeEEEcCCCCCceEEEEE
Confidence 567 8888765433 332222 23322 467899998888655556777666444443 22333222 2567977664
Q ss_pred EEEecCCCCeeEEEEEcCC--CCcceEEEeccccCc
Q 035723 106 GFVLDSPSNLSILFFQNSD--DRDINIAVASASLQP 139 (528)
Q Consensus 106 ~~t~~~~~~~~~ly~E~~~--~~~~~f~vDd~~l~~ 139 (528)
.++......+|-||+.. ...-++-||||+|.+
T Consensus 125 --~l~~~~~~fqi~fe~~~g~~~~g~IAiDDI~i~~ 158 (161)
T smart00137 125 --ALSKWQQPFQVVFEGTRGKGHSGYIALDDILLSN 158 (161)
T ss_pred --EecCCCCcEEEEEEEEEcCCccceEEEeEEEeec
Confidence 45434457888888741 356899999999864
No 45
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=90.84 E-value=0.12 Score=54.26 Aligned_cols=95 Identities=14% Similarity=0.261 Sum_probs=61.4
Q ss_pred HHHHHHhhcCeeccCCcccCcccccC-CCccCcchHHHHHHHHHhcCceEEEeeeeeCCC---------CCCcccccC--
Q 035723 203 YQKWFVERFNAAVFENELKWYATEPE-QGKINYTIADQMMEFVRSNQLIARGHNIFWEDP---------KYTPAWVRN-- 270 (528)
Q Consensus 203 y~~~~~~~Fn~vt~eN~~kW~~~Ep~-~G~~~~~~~D~~v~~a~~~gi~vrGH~L~W~~~---------~~~P~W~~~-- 270 (528)
.+++-..+...|..+ .=|+.+|+. |++|||+..+++.+.+++.||+++- +|..|.- -..|.|+..
T Consensus 22 L~~LK~~GV~GVmvd--vWWGiVE~~~p~~ydWs~Y~~l~~~vr~~GLk~~~-vmsfH~cGgNvgD~~~IpLP~Wv~~~~ 98 (402)
T PF01373_consen 22 LRALKSAGVDGVMVD--VWWGIVEGEGPQQYDWSGYRELFEMVRDAGLKLQV-VMSFHQCGGNVGDDCNIPLPSWVWEIG 98 (402)
T ss_dssp HHHHHHTTEEEEEEE--EEHHHHTGSSTTB---HHHHHHHHHHHHTT-EEEE-EEE-S-BSSSTTSSSEB-S-HHHHHHH
T ss_pred HHHHHHcCCcEEEEE--eEeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEE-EEeeecCCCCCCCccCCcCCHHHHhcc
Confidence 334444567777776 899999997 9999999999999999999999984 4555531 137999852
Q ss_pred ------------------CCh----HHHHHHHHHHHHHHHHHccCceeEEEeeccc
Q 035723 271 ------------------LTG----PALQSAVNSRIQSLMNKYKEEFIHWDVSNEM 304 (528)
Q Consensus 271 ------------------~~~----~~~~~~~~~~I~~v~~rY~g~v~~WDVvNE~ 304 (528)
++| .. .+...+|++...++|++.+ +++-|.
T Consensus 99 ~~~di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~f~~~~---~~I~~I 150 (402)
T PF01373_consen 99 KKDDIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDNFSDYL---STITEI 150 (402)
T ss_dssp HHSGGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHHCHHHH---TGEEEE
T ss_pred ccCCcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHHHHHHH---hhheEE
Confidence 121 23 6677788888887776544 445543
No 46
>PLN03089 hypothetical protein; Provisional
Probab=90.76 E-value=2.7 Score=44.09 Aligned_cols=114 Identities=11% Similarity=0.098 Sum_probs=68.1
Q ss_pred cCCCceeecCCCCceEEEEecCCCCCCCceEEEEEeCCCEEEEEEEEEEccC-CCcEEEEEEEEeCCeeEEeeeEEEeCC
Q 035723 20 LYNGGMLKNHPPENFSSIAHFSTGFYTPAFILHNLTPGTIYCFSIWLKIEGA-NSAHVRASLKTENSVYNCVGSAAAKQG 98 (528)
Q Consensus 20 ~~~gg~~~~~~g~~~sl~vt~Rt~~w~G~~~~~~l~~G~~Y~vSawVk~~~g-~~~~~~vt~~~~~g~y~~~~~~~v~~~ 98 (528)
++|+.++.-|.|+. ++-. |+. -+++|.+...+|+.|.+|+++. ... .+..+.++.....+.+.. +..-.++
T Consensus 72 ~~~~m~~~vP~G~~-Av~L-G~e---~sI~Q~i~t~~G~~Y~LTFs~a-r~c~~~~~v~vsv~~~~~~~~~--qt~~~~~ 143 (373)
T PLN03089 72 KQGGMLLVVPEGAH-AVRL-GNE---ASISQTLTVTKGSYYSLTFSAA-RTCAQDESLNVSVPPESGVLPL--QTLYSSS 143 (373)
T ss_pred ccCceeEECCCCch-hhhc-CCC---ceEEEEEEccCCCEEEEEEEec-CCCCCCceEEEEecCCCcEEee--EEeccCC
Confidence 44555555566544 4654 443 4578999999999999999998 322 233455543322232221 1112578
Q ss_pred CEEEEEeEEEecCCCCeeEEEEEcC-CCCcceEEEeccccCccc
Q 035723 99 CWSFLKGGFVLDSPSNLSILFFQNS-DDRDINIAVASASLQPFT 141 (528)
Q Consensus 99 ~Wt~l~g~~t~~~~~~~~~ly~E~~-~~~~~~f~vDd~~l~~~~ 141 (528)
+|..-.-.|+...+...+.+|.-+. .++.+==.||||+|..+.
T Consensus 144 gw~~~s~~F~A~s~~t~l~F~~~~~~~D~~CGPviD~VaIk~l~ 187 (373)
T PLN03089 144 GWDSYAWAFKAESDVVNLVFHNPGVEEDPACGPLIDAVAIKTLF 187 (373)
T ss_pred CcEEEEEEEEEecccEEEEEECcccCCCCcccceeeeEEEeecc
Confidence 9999998998766654555542221 133333359999997644
No 47
>PF03425 CBM_11: Carbohydrate binding domain (family 11); InterPro: IPR005087 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM11 from CAZY which binds both beta-1,4-glucan and beta-1,3-1,4-mixed linked glucans.; GO: 0008810 cellulase activity, 0030245 cellulose catabolic process; PDB: 1V0A_A.
Probab=90.28 E-value=5.1 Score=37.58 Aligned_cols=103 Identities=14% Similarity=0.170 Sum_probs=45.9
Q ss_pred EEEEecCCCCCCCceEEEE--EeC---CCEEEEEEEEEEccCCCcEEEEEEEEeCCeeEE-eeeEEEeCCCEEEEEeE--
Q 035723 35 SSIAHFSTGFYTPAFILHN--LTP---GTIYCFSIWLKIEGANSAHVRASLKTENSVYNC-VGSAAAKQGCWSFLKGG-- 106 (528)
Q Consensus 35 sl~vt~Rt~~w~G~~~~~~--l~~---G~~Y~vSawVk~~~g~~~~~~vt~~~~~g~y~~-~~~~~v~~~~Wt~l~g~-- 106 (528)
.|.++.. ..+.|-...+. |-+ -..--|+.|+|-. |+.+.++|.++... .+.. ..++.++.. |++++-.
T Consensus 45 ~l~~~y~-~~~~~~~~~v~~~l~~~DwS~~~gl~Fw~k~d-gs~~~l~vqi~d~~-~~e~~~~~~~~~~~-W~~V~IPF~ 120 (178)
T PF03425_consen 45 ALAISYD-GGGSGGWAGVTKDLDPGDWSGYGGLSFWIKGD-GSGNKLRVQIKDGG-DYEYWEASFTDSST-WKTVEIPFS 120 (178)
T ss_dssp EEEEEEE---SS-EEEEE-EE-S----TT--EEEEEEEE-------EEEEEEEE--EEEEEEEEE---SS--EEEEEEGG
T ss_pred EEEEEEe-cCCCCceEEEecCCCcCCcccCCcEEEEEEcC-CCCcEEEEEEecCC-cceeeEeecCCCCc-CEEEEEEHH
Confidence 4666655 55555554442 211 1344799999988 66666655444322 2332 234555555 9999875
Q ss_pred -EEe-----cCC--------C---CeeEEEEEcCCCCcceEEEeccccCccch
Q 035723 107 -FVL-----DSP--------S---NLSILFFQNSDDRDINIAVASASLQPFTD 142 (528)
Q Consensus 107 -~t~-----~~~--------~---~~~~ly~E~~~~~~~~f~vDd~~l~~~~~ 142 (528)
|+. |.. - ..+.+|+-+. ....+|+||||.+.+.++
T Consensus 121 ~f~~~~~~~p~g~~~~~~ldl~~v~~~~~~~~~~-~~~~~~~iDdI~l~~~~~ 172 (178)
T PF03425_consen 121 DFTQRPDYQPGGWGADGTLDLTNVWEFAFYVNGG-GGAGTFYIDDIRLYGAAD 172 (178)
T ss_dssp G-EE--S---TT----SS--TTSEEEEEEEESSS----EEEEEEEEEEE-B--
T ss_pred HcccccccCCCCCCcccccChHHcEEEEEEEcCC-CceeEEEEEeEEEEeCcc
Confidence 444 211 1 2345566554 223899999999987543
No 48
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=90.07 E-value=1.1 Score=48.69 Aligned_cols=90 Identities=13% Similarity=0.228 Sum_probs=67.9
Q ss_pred hcCeeccCCcccCcccccCCC---ccCcch---HHHHHHHHHhcCceEEEeeeeeCCCCCCcccccC----CChHHHHHH
Q 035723 210 RFNAAVFENELKWYATEPEQG---KINYTI---ADQMMEFVRSNQLIARGHNIFWEDPKYTPAWVRN----LTGPALQSA 279 (528)
Q Consensus 210 ~Fn~vt~eN~~kW~~~Ep~~G---~~~~~~---~D~~v~~a~~~gi~vrGH~L~W~~~~~~P~W~~~----~~~~~~~~~ 279 (528)
+++.-++- +.|.+|-|.-- ..|-+- ...+++-+.+|||++.- || +|-. +|.++.. +-.+++.+.
T Consensus 104 gv~afRFS--IsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~V-TL-fHwD--lPq~LeDeYgGwLn~~ived 177 (524)
T KOG0626|consen 104 GVDAFRFS--ISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFV-TL-FHWD--LPQALEDEYGGWLNPEIVED 177 (524)
T ss_pred CCCeEEEE--eehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEE-EE-ecCC--CCHHHHHHhccccCHHHHHH
Confidence 46666665 99999998532 344333 34688999999999863 33 3432 8888874 223456778
Q ss_pred HHHHHHHHHHHccCceeEEEeecccc
Q 035723 280 VNSRIQSLMNKYKEEFIHWDVSNEML 305 (528)
Q Consensus 280 ~~~~I~~v~~rY~g~v~~WDVvNE~~ 305 (528)
+++|.+-+.++|++||..|=-.|||.
T Consensus 178 F~~yA~~CF~~fGDrVK~WiT~NEP~ 203 (524)
T KOG0626|consen 178 FRDYADLCFQEFGDRVKHWITFNEPN 203 (524)
T ss_pred HHHHHHHHHHHhcccceeeEEecccc
Confidence 99999999999999999999999997
No 49
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=89.42 E-value=0.69 Score=51.19 Aligned_cols=116 Identities=15% Similarity=0.219 Sum_probs=79.3
Q ss_pred CceEEeecCCccCChhHHHHHH----hhcCeeccCCcccCcccccCCCccCcch-HH--HHHHHHHhcCceEE--Eeee-
Q 035723 187 FPFGSAIASTILGNLPYQKWFV----ERFNAAVFENELKWYATEPEQGKINYTI-AD--QMMEFVRSNQLIAR--GHNI- 256 (528)
Q Consensus 187 F~fG~av~~~~~~~~~y~~~~~----~~Fn~vt~eN~~kW~~~Ep~~G~~~~~~-~D--~~v~~a~~~gi~vr--GH~L- 256 (528)
..|...+|.-....+.+.+++. ..+|.|..- .-|.-.||++|+|+|+- .| +++..|.++|+-|. ..+-
T Consensus 35 ~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtY--VfWn~Hep~~g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyI 112 (649)
T KOG0496|consen 35 ILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTY--VFWNLHEPSPGKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYI 112 (649)
T ss_pred EEEEeccccccCChhhhHHHHHHHHhcCCceeeee--eecccccCCCCcccccchhHHHHHHHHHHHCCeEEEecCCCeE
Confidence 3567777765555444555543 468888765 89999999999999985 33 45677889997663 2232
Q ss_pred --eeCCCCCCcccccCC-------ChHHHHHHHHHHHHHHHHHc-------cCceeEEEeecccc
Q 035723 257 --FWEDPKYTPAWVRNL-------TGPALQSAVNSRIQSLMNKY-------KEEFIHWDVSNEML 305 (528)
Q Consensus 257 --~W~~~~~~P~W~~~~-------~~~~~~~~~~~~I~~v~~rY-------~g~v~~WDVvNE~~ 305 (528)
-|.- ...|-|+... +.+..+.+|++|.+.++.+- +|-|..=.|=||--
T Consensus 113 caEw~~-GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG 176 (649)
T KOG0496|consen 113 CAEWNF-GGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYG 176 (649)
T ss_pred EecccC-CCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhh
Confidence 2543 3578666542 45668888888888777643 36788889999954
No 50
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=89.41 E-value=0.62 Score=47.94 Aligned_cols=77 Identities=17% Similarity=0.197 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhCCCCEEEEeeecCCCCC----hhHHHHHHHHHHHHHhc----CCC-eeEEEEEeeecCC------CCC
Q 035723 385 PLMRAILDKLATLNLPIWLTEVDISGKLD----KETQAVYLEQVLREGFS----HPS-VNGIMLWTALHPN------GCY 449 (528)
Q Consensus 385 ~~i~~~L~~~a~~glpI~iTE~dv~~~~~----~~~QA~~~~~~~~~~~s----~p~-v~gi~~Wg~~d~~------~~~ 449 (528)
+.+...|++++..++||+|||.++++..+ .+..+.+.+.+.+.+.+ +|. -..+.++.++|.. .|.
T Consensus 214 da~~~a~~~~g~~~~~vvv~ETGWPs~G~~~a~~~nA~~~~~nl~~~~~~gt~~~~~~~~~~y~F~~FdE~~K~~~~~E~ 293 (310)
T PF00332_consen 214 DAVYAAMEKLGFPNVPVVVGETGWPSAGDPGATPENAQAYNQNLIKHVLKGTPLRPGNGIDVYIFEAFDENWKPGPEVER 293 (310)
T ss_dssp HHHHHHHHTTT-TT--EEEEEE---SSSSTTCSHHHHHHHHHHHHHHCCGBBSSSBSS---EEES-SB--TTSSSSGGGG
T ss_pred HHHHHHHHHhCCCCceeEEeccccccCCCCCCCcchhHHHHHHHHHHHhCCCcccCCCCCeEEEEEEecCcCCCCCcccc
Confidence 34555555555557899999999998532 34444555666655442 233 2234444555532 256
Q ss_pred cccccCCCCCCc
Q 035723 450 QMCLTDNNLQNL 461 (528)
Q Consensus 450 ~~gL~d~d~~pK 461 (528)
++|||+.|.+||
T Consensus 294 ~wGlf~~d~~~k 305 (310)
T PF00332_consen 294 HWGLFYPDGTPK 305 (310)
T ss_dssp G--SB-TTSSBS
T ss_pred eeeeECCCCCee
Confidence 899999999876
No 51
>PF00629 MAM: MAM domain; InterPro: IPR000998 MAM is an acronym derived from meprin, A-5 protein, and receptor protein-tyrosine phosphatase mu. The MAM domain consists of approximately 170 amino acids. It occurs in several cell surface proteins, including Meprins, and is thought to function as an interaction or adhesion domain []. The domain has been shown to play a role in homodimerization of protein-tyrosine phosphatase mu [] and appears to help determine the specificity of these interactions. It has been reported that certain cysteine mutations in the MAM domain of murine meprin A result in the formation of monomeric meprin, which has altered stability and activity []. This indicates that these domain-domain interactions are critical for structure and function of the enzyme. It has also been shown that the MAM domain of meprins is necessary for correct folding and transport through the secretory pathway []. ; GO: 0016020 membrane; PDB: 2C9A_A 2V5Y_A.
Probab=89.23 E-value=7.4 Score=34.67 Aligned_cols=106 Identities=17% Similarity=0.226 Sum_probs=53.4
Q ss_pred CCceEEEEecCCCCCCCceEEE--EEeCCCEEEEEEEEEEccCCCcEEEEEEEEeC-CeeEEeee-EEEeCCCEEEEEeE
Q 035723 31 PENFSSIAHFSTGFYTPAFILH--NLTPGTIYCFSIWLKIEGANSAHVRASLKTEN-SVYNCVGS-AAAKQGCWSFLKGG 106 (528)
Q Consensus 31 g~~~sl~vt~Rt~~w~G~~~~~--~l~~G~~Y~vSawVk~~~g~~~~~~vt~~~~~-g~y~~~~~-~~v~~~~Wt~l~g~ 106 (528)
+|.| |++......=...+.-. .+.....+.|++|....+.....+.|.+.... +....+.+ .....+.|.+..-.
T Consensus 44 ~G~y-l~~~~~~~~~~~~a~L~Sp~~~~~~~~cl~F~y~~~g~~~~~L~V~v~~~~~~~~~~l~~~~~~~~~~W~~~~v~ 122 (160)
T PF00629_consen 44 SGHY-LYVDSSSGSPGDSARLISPVFPASGNSCLSFWYYMYGSSVGTLRVYVREESTGNSTPLWSITGSQGNSWQRAQVN 122 (160)
T ss_dssp -SEE-EEEE-TT--TT-EEEEEEEEE--SS--EEEEEEEEE-SSSEEEEEEEEETT----S-SEEE-----SSEEEEEEE
T ss_pred ceeE-EEEeecccccCceEeeccccccccccceeEEEEeeccccceeeEEEEEecCCccceeeeeecCCCcCCccceEEE
Confidence 4777 77766555222222211 45666688899999997766566777666542 22222322 33346899977665
Q ss_pred EEecCCCCeeEEEEEcCC--CCcceEEEeccccCc
Q 035723 107 FVLDSPSNLSILFFQNSD--DRDINIAVASASLQP 139 (528)
Q Consensus 107 ~t~~~~~~~~~ly~E~~~--~~~~~f~vDd~~l~~ 139 (528)
+... ...++|.||... ...-.+-||||++.+
T Consensus 123 l~~~--~~~~~i~f~~~~~~~~~~~iaiDdi~~~~ 155 (160)
T PF00629_consen 123 LPPI--SSPFQIIFEAIRGSSYRGDIAIDDISLSP 155 (160)
T ss_dssp E-----TS-EEEEEEEEE--SS--EEEEEEEEEES
T ss_pred cccc--cccceEEEEEEEcCCCceEEEEEEEEEeC
Confidence 4443 557888887531 345899999999974
No 52
>PLN03089 hypothetical protein; Provisional
Probab=89.12 E-value=3.7 Score=43.04 Aligned_cols=102 Identities=12% Similarity=0.112 Sum_probs=61.4
Q ss_pred CceEE-EEecCCCCCCCceEEEEEeCCCEEEEEEEEEEccC-CCcEEEEEEEEeC-Ce---eEEeeeEEEeCCCEEEEEe
Q 035723 32 ENFSS-IAHFSTGFYTPAFILHNLTPGTIYCFSIWLKIEGA-NSAHVRASLKTEN-SV---YNCVGSAAAKQGCWSFLKG 105 (528)
Q Consensus 32 ~~~sl-~vt~Rt~~w~G~~~~~~l~~G~~Y~vSawVk~~~g-~~~~~~vt~~~~~-g~---y~~~~~~~v~~~~Wt~l~g 105 (528)
|++++ ++++|. .+++|.+...+|++|++|+.+--... -...+.|.....+ .+ |..- ..|+|++-.-
T Consensus 253 G~~aveL~~g~e---~aI~Q~v~T~~G~~Y~LsFs~g~a~~~c~gs~~V~a~ag~~~~~v~~~s~-----g~gg~~~~s~ 324 (373)
T PLN03089 253 GKRAVELVSGKE---SAIAQVVRTVPGKSYNLSFTVGDANNGCHGSMMVEAFAGKDTQKVPYESQ-----GKGGFKRASL 324 (373)
T ss_pred CceEEEeccCCc---ceEEEEEEccCCCEEEEEEEEccCCCCCCCcEEEEEEeecccceEEEecC-----CCcceEEEEE
Confidence 34445 456666 34789999999999999999865443 1223333222211 11 2221 2457999999
Q ss_pred EEEecCCCCeeEE---EEEcCCCCcceEE---EeccccCccc
Q 035723 106 GFVLDSPSNLSIL---FFQNSDDRDINIA---VASASLQPFT 141 (528)
Q Consensus 106 ~~t~~~~~~~~~l---y~E~~~~~~~~f~---vDd~~l~~~~ 141 (528)
.|+..+..+.+.+ |..+..+....++ ||||+|.+..
T Consensus 325 ~F~A~s~~Trl~F~s~~y~~~~d~~~~~cGPvlDdV~v~~~~ 366 (373)
T PLN03089 325 RFKAVSNRTRITFYSSFYHTKSDDFGSLCGPVVDDVRVVPVR 366 (373)
T ss_pred EEEeccCCEEEEEEEeecccccCcCCCcccceeeeEEEEEcc
Confidence 9997777655554 3344312233445 9999997753
No 53
>PLN02801 beta-amylase
Probab=88.99 E-value=2.1 Score=46.20 Aligned_cols=63 Identities=16% Similarity=0.323 Sum_probs=49.8
Q ss_pred HHHHHhhcCeeccCCcccCccccc-CCCccCcchHHHHHHHHHhcCceEEEeeeeeCC------C---CCCccccc
Q 035723 204 QKWFVERFNAAVFENELKWYATEP-EQGKINYTIADQMMEFVRSNQLIARGHNIFWED------P---KYTPAWVR 269 (528)
Q Consensus 204 ~~~~~~~Fn~vt~eN~~kW~~~Ep-~~G~~~~~~~D~~v~~a~~~gi~vrGH~L~W~~------~---~~~P~W~~ 269 (528)
+++-..+...|..+ .=|+-+|. .|++|||+...++++.+++.||+++- +|-.|. . -..|.|+.
T Consensus 44 ~~LK~~GVdGVmvD--VWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlq~-vmSFHqCGGNVGD~~~IpLP~WV~ 116 (517)
T PLN02801 44 KRLKEAGVDGVMVD--VWWGIVESKGPKQYDWSAYRSLFELVQSFGLKIQA-IMSFHQCGGNVGDAVNIPIPQWVR 116 (517)
T ss_pred HHHHHcCCCEEEEe--eeeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEE-EEEecccCCCCCCcccccCCHHHH
Confidence 34444678888887 89999997 69999999999999999999999983 455663 0 02799985
No 54
>PLN02705 beta-amylase
Probab=88.88 E-value=2.1 Score=47.19 Aligned_cols=63 Identities=14% Similarity=0.222 Sum_probs=50.3
Q ss_pred HHHHHhhcCeeccCCcccCccccc-CCCccCcchHHHHHHHHHhcCceEEEeeeeeCC-------C--CCCccccc
Q 035723 204 QKWFVERFNAAVFENELKWYATEP-EQGKINYTIADQMMEFVRSNQLIARGHNIFWED-------P--KYTPAWVR 269 (528)
Q Consensus 204 ~~~~~~~Fn~vt~eN~~kW~~~Ep-~~G~~~~~~~D~~v~~a~~~gi~vrGH~L~W~~-------~--~~~P~W~~ 269 (528)
+.+-..+..-|..+ .=|+-+|. .|++|+|+...++++.+++.||+++- +|-+|. . -..|.|+.
T Consensus 275 ~aLK~aGVdGVmvD--VWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqv-VmSFHqCGGNVGD~~~IPLP~WV~ 347 (681)
T PLN02705 275 SHMKSLNVDGVVVD--CWWGIVEGWNPQKYVWSGYRELFNIIREFKLKLQV-VMAFHEYGGNASGNVMISLPQWVL 347 (681)
T ss_pred HHHHHcCCCEEEEe--eeeeEeecCCCCcCCcHHHHHHHHHHHHcCCeEEE-EEEeeccCCCCCCcccccCCHHHH
Confidence 34444678888887 89999998 69999999999999999999999983 556663 0 13899985
No 55
>PLN02905 beta-amylase
Probab=88.39 E-value=2.4 Score=46.89 Aligned_cols=63 Identities=14% Similarity=0.218 Sum_probs=50.2
Q ss_pred HHHHhhcCeeccCCcccCccccc-CCCccCcchHHHHHHHHHhcCceEEEeeeeeCC------C---CCCcccccC
Q 035723 205 KWFVERFNAAVFENELKWYATEP-EQGKINYTIADQMMEFVRSNQLIARGHNIFWED------P---KYTPAWVRN 270 (528)
Q Consensus 205 ~~~~~~Fn~vt~eN~~kW~~~Ep-~~G~~~~~~~D~~v~~a~~~gi~vrGH~L~W~~------~---~~~P~W~~~ 270 (528)
.+-.....-|..+ .=|+-+|+ .|++|+|+...++++.+++.||+++- +|-+|. . -..|.|+..
T Consensus 294 aLK~aGVdGVmvD--VWWGiVE~~gP~~YdWsgY~~L~~mvr~~GLKlqv-VMSFHqCGGNVGD~~~IPLP~WV~e 366 (702)
T PLN02905 294 ILKSINVDGVKVD--CWWGIVEAHAPQEYNWNGYKRLFQMVRELKLKLQV-VMSFHECGGNVGDDVCIPLPHWVAE 366 (702)
T ss_pred HHHHcCCCEEEEe--eeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeEEE-EEEecccCCCCCCcccccCCHHHHH
Confidence 3334678888887 89999997 78999999999999999999999983 566663 0 138999853
No 56
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=88.34 E-value=1.9 Score=35.06 Aligned_cols=40 Identities=30% Similarity=0.344 Sum_probs=32.3
Q ss_pred eeeeecCCceEEEeeeeeeEEEEEEeCC-eeeEEEEEEecC
Q 035723 479 VTGHTDGHGSFSFYGFLGEYTVSVKYGN-RTANSTFSLCQG 518 (528)
Q Consensus 479 ~~~~t~~~G~~~~rgf~G~y~v~v~~~~-~~~~~~~~l~~~ 518 (528)
....||++|.|.+..-.|+|.+.+++-| ......+++..+
T Consensus 27 ~~~~Td~~G~F~i~~~~g~~~l~is~~Gy~~~~~~i~~~~~ 67 (88)
T PF13715_consen 27 KGTVTDENGRFSIKLPEGDYTLKISYIGYETKTITISVNSN 67 (88)
T ss_pred ceEEECCCeEEEEEEcCCCeEEEEEEeCEEEEEEEEEecCC
Confidence 4679999999999988999999999998 455556666444
No 57
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=86.30 E-value=6.5 Score=40.48 Aligned_cols=142 Identities=8% Similarity=0.005 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHHHHHHHH-ccC----ceeEEEeecccccccccccccChHHHHHHHHHHHhhCCCcEEEee-cCCcccCC
Q 035723 273 GPALQSAVNSRIQSLMNK-YKE----EFIHWDVSNEMLHFDFYEQRLGHDATLHFYETAHQSDPLATLFMN-EFNVVETC 346 (528)
Q Consensus 273 ~~~~~~~~~~~I~~v~~r-Y~g----~v~~WDVvNE~~~~~~~~~~~G~d~~~~af~~Ar~~dP~a~L~~N-dy~~~~~~ 346 (528)
.++.++.|.+++..++.+ |.| .+..|.-+++..........---+++....+.||+..|+++|+.| ++.+++..
T Consensus 142 ~~~W~~il~~rl~~l~~kGfDGvfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II~NnG~eil~~~ 221 (315)
T TIGR01370 142 DPEWKAIAFSYLDRVIAQGFDGVYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNPQFVIIPQNGEELLRDD 221 (315)
T ss_pred cHHHHHHHHHHHHHHHHcCCCeEeeccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCCCEEEEecCchhhhhcc
Confidence 456788888888877653 554 566666555542110010000014667777888999999999866 33332110
Q ss_pred CCcchhHHHHHHHHHHHHhCCceeeEEeeeccCCCC----C---HHHHHHHHHHHHhCCCCEEEEeeecCCCCChhHHHH
Q 035723 347 SDENSTVDRYISRLRELKRGGVLMDGIGLESHFTVP----N---LPLMRAILDKLATLNLPIWLTEVDISGKLDKETQAV 419 (528)
Q Consensus 347 ~~~~~~~~~~~~~v~~l~~~G~~iDgIG~Q~H~~~p----~---~~~i~~~L~~~a~~glpI~iTE~dv~~~~~~~~QA~ 419 (528)
. ..+. ..||||+..+=+..+ + .......|+++...|+||.+.|+--+.. ...+...
T Consensus 222 ---~---g~~~----------~~idgV~~Eslf~~~~~~~~e~dr~~~l~~L~~~~~~G~~Vl~IDY~~~~~-~~~~n~~ 284 (315)
T TIGR01370 222 ---H---GGLA----------ATVSGWAVEELFYYAANRPTEAERQRRLLALYRLWQQGKFVLTVDYVDDGT-KTNENPA 284 (315)
T ss_pred ---c---cchh----------hhceEEEecceEEcCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEEecCCcc-cchhhHH
Confidence 0 0111 158888888754321 1 2345566777777799999999976542 1122233
Q ss_pred HHHHHHHHHhcC
Q 035723 420 YLEQVLREGFSH 431 (528)
Q Consensus 420 ~~~~~~~~~~s~ 431 (528)
..+++.+.+.++
T Consensus 285 ~~~~~~~~~~~~ 296 (315)
T TIGR01370 285 RMKDAAEKARAA 296 (315)
T ss_pred HHHHHHHHHHHc
Confidence 445555555554
No 58
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=86.26 E-value=15 Score=31.83 Aligned_cols=82 Identities=9% Similarity=0.121 Sum_probs=45.5
Q ss_pred EEEeCCCEEEEEEEEEEccCCCcEEEEEEEEeC--CeeEEeeeEEE--eCCCEEEEEeEEEecCCCCeeEEEEEcCCCCc
Q 035723 52 HNLTPGTIYCFSIWLKIEGANSAHVRASLKTEN--SVYNCVGSAAA--KQGCWSFLKGGFVLDSPSNLSILFFQNSDDRD 127 (528)
Q Consensus 52 ~~l~~G~~Y~vSawVk~~~g~~~~~~vt~~~~~--g~y~~~~~~~v--~~~~Wt~l~g~~t~~~~~~~~~ly~E~~~~~~ 127 (528)
|.+..+-+|.|++.+....+. -++.|..++ |+...--.... .-..|+.+.....++... =.|||......+
T Consensus 39 Vd~~~~g~y~~~~~~a~~~~~---~~~~l~id~~~g~~~~~~~~~~tg~w~~~~~~~~~v~l~~G~--h~i~l~~~~~~~ 113 (125)
T PF03422_consen 39 VDVPEAGTYTLTIRYANGGGG---GTIELRIDGPDGTLIGTVSLPPTGGWDTWQTVSVSVKLPAGK--HTIYLVFNGGDG 113 (125)
T ss_dssp EEESSSEEEEEEEEEEESSSS---EEEEEEETTTTSEEEEEEEEE-ESSTTEEEEEEEEEEEESEE--EEEEEEESSSSS
T ss_pred EeeCCCceEEEEEEEECCCCC---cEEEEEECCCCCcEEEEEEEcCCCCccccEEEEEEEeeCCCe--eEEEEEEECCCC
Confidence 789999999999555544433 334445433 44211111212 234588888888887733 356665541222
Q ss_pred ceEEEeccccC
Q 035723 128 INIAVASASLQ 138 (528)
Q Consensus 128 ~~f~vDd~~l~ 138 (528)
-.+.||-+++.
T Consensus 114 ~~~niD~~~f~ 124 (125)
T PF03422_consen 114 WAFNIDYFQFT 124 (125)
T ss_dssp B-EEEEEEEEE
T ss_pred ceEEeEEEEEE
Confidence 55777877663
No 59
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=85.42 E-value=16 Score=37.50 Aligned_cols=157 Identities=17% Similarity=0.267 Sum_probs=92.4
Q ss_pred CcchHHHHHHHHHhcCceEEEeee---eeCC----CCCCccccc--------C----------CC--hHHHHHHHHHHHH
Q 035723 233 NYTIADQMMEFVRSNQLIARGHNI---FWED----PKYTPAWVR--------N----------LT--GPALQSAVNSRIQ 285 (528)
Q Consensus 233 ~~~~~D~~v~~a~~~gi~vrGH~L---~W~~----~~~~P~W~~--------~----------~~--~~~~~~~~~~~I~ 285 (528)
.|+.+..+++.|.++||+|++=.- .... ....|.|+. . ++ .++.++.+.+-|+
T Consensus 68 g~DpL~~~I~eaHkrGlevHAW~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~ 147 (311)
T PF02638_consen 68 GFDPLEFMIEEAHKRGLEVHAWFRVGFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVK 147 (311)
T ss_pred CccHHHHHHHHHHHcCCEEEEEEEeecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHH
Confidence 478899999999999999974220 0010 012355532 1 22 2689999999999
Q ss_pred HHHHHccCceeEEE-ee---ccc----ccccccccccC--------------------hHHHHHHHHHHHhhCCCcEEEe
Q 035723 286 SLMNKYKEEFIHWD-VS---NEM----LHFDFYEQRLG--------------------HDATLHFYETAHQSDPLATLFM 337 (528)
Q Consensus 286 ~v~~rY~g~v~~WD-Vv---NE~----~~~~~~~~~~G--------------------~d~~~~af~~Ar~~dP~a~L~~ 337 (528)
+++++|.=.=.++| .. .+. .....|.+..| .++++..++.+|+..|++++-+
T Consensus 148 Eiv~~YdvDGIhlDdy~yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~kP~v~~si 227 (311)
T PF02638_consen 148 EIVKNYDVDGIHLDDYFYPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAIKPWVKFSI 227 (311)
T ss_pred HHHhcCCCCeEEecccccccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 99999971111344 11 000 00011222111 1356788999999999999987
Q ss_pred ecCCcccCCCCcchhHHHHHHHHHHHHhCCceeeEEeeeccCC-CCC-HHHHHHHHHHHHh
Q 035723 338 NEFNVVETCSDENSTVDRYISRLRELKRGGVLMDGIGLESHFT-VPN-LPLMRAILDKLAT 396 (528)
Q Consensus 338 Ndy~~~~~~~~~~~~~~~~~~~v~~l~~~G~~iDgIG~Q~H~~-~p~-~~~i~~~L~~~a~ 396 (528)
.-++.... ....+++-....+++| .||-|=-|.+.. ... ...+...+...+.
T Consensus 228 sp~g~~~~------~y~~~~qD~~~W~~~G-~iD~i~Pq~Y~~~~~~~~~~~~~~~~~w~~ 281 (311)
T PF02638_consen 228 SPFGIWNS------AYDDYYQDWRNWLKEG-YIDYIVPQIYWSDFSHFTAPYEQLAKWWAK 281 (311)
T ss_pred Eeecchhh------hhhheeccHHHHHhcC-CccEEEeeecccccchhHHHHHHHHHHHHH
Confidence 55443211 1233444445566677 899999999986 432 3345555555543
No 60
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=80.43 E-value=1.1e+02 Score=34.73 Aligned_cols=230 Identities=16% Similarity=0.186 Sum_probs=99.3
Q ss_pred HHHHHHHhcC--ceEEEeeeeeCCCCCCcccccCC---C--hHH-HHHHHHHHHHHHHHHccCceeEEEeeccccccccc
Q 035723 239 QMMEFVRSNQ--LIARGHNIFWEDPKYTPAWVRNL---T--GPA-LQSAVNSRIQSLMNKYKEEFIHWDVSNEMLHFDFY 310 (528)
Q Consensus 239 ~~v~~a~~~g--i~vrGH~L~W~~~~~~P~W~~~~---~--~~~-~~~~~~~~I~~v~~rY~g~v~~WDVvNE~~~~~~~ 310 (528)
.+++-|++++ |++-| |-|. .|.|+.+- + .+. ....+.++|....+.|+=.|.+-.+|||-..+
T Consensus 116 ~L~~eAKkrNP~ikl~~--L~W~----~PgW~~~g~~~~~~~~~~~a~Y~~~wl~ga~~~~gl~idYvg~~NEr~~~--- 186 (669)
T PF02057_consen 116 WLMAEAKKRNPNIKLYG--LPWG----FPGWVGNGWNWPYDNPQLTAYYVVSWLLGAKKTHGLDIDYVGIWNERGFD--- 186 (669)
T ss_dssp HHHHHHHHH-TT-EEEE--EES-----B-GGGGTTSS-TTSSHHHHHHHHHHHHHHHHHHH-----EE-S-TTS------
T ss_pred hhHHHHHhhCCCCeEEE--eccC----CCccccCCCCCcccchhhhhHHHHHHHHHHHHHhCCCceEechhhccCCC---
Confidence 3667777775 66654 7786 79999762 1 122 23345688887778888789999999996432
Q ss_pred ccccChHHHHHHHHHHHh-hCCCcEEEeecCCcccCCCCcchhHHHHHHHHHHHHhCCceeeEEeeeccCCCCCHHHHHH
Q 035723 311 EQRLGHDATLHFYETAHQ-SDPLATLFMNEFNVVETCSDENSTVDRYISRLRELKRGGVLMDGIGLESHFTVPNLPLMRA 389 (528)
Q Consensus 311 ~~~~G~d~~~~af~~Ar~-~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~v~~l~~~G~~iDgIG~Q~H~~~p~~~~i~~ 389 (528)
.+|++..-+...+ ..-++||+..|-. .+. -...++. =.+|.+ -+|.||.|-- ...+...
T Consensus 187 -----~~~ik~lr~~l~~~gy~~vkiva~D~~-~~~------~~~~m~~-D~~l~~---avdvig~HY~-~~~~~~~--- 246 (669)
T PF02057_consen 187 -----VNYIKWLRKALNSNGYNKVKIVAADNN-WES------ISDDMLS-DPELRN---AVDVIGYHYP-GTYSSKN--- 246 (669)
T ss_dssp -----HHHHHHHHHHHHHTT-TT-EEEEEEE--STT------HHHHHHH--HHHHH---H--EEEEES--TT---HH---
T ss_pred -----hhHHHHHHHHHhhccccceEEEEeCCC-ccc------hhhhhhc-CHHHHh---cccEeccccC-CCCcHHH---
Confidence 3454332222223 3456999999832 111 1122221 122322 5799999632 1121111
Q ss_pred HHHHHHhCCCCEEEEeeecCCCCChhHHHHHHHHHHHHHhcCCCeeEEEEEeeecC----CCCCcccccCC------CCC
Q 035723 390 ILDKLATLNLPIWLTEVDISGKLDKETQAVYLEQVLREGFSHPSVNGIMLWTALHP----NGCYQMCLTDN------NLQ 459 (528)
Q Consensus 390 ~L~~~a~~glpI~iTE~dv~~~~~~~~QA~~~~~~~~~~~s~p~v~gi~~Wg~~d~----~~~~~~gL~d~------d~~ 459 (528)
. ...|+|||-+|=-..-. ...=+-.+.+.+..-+-.......+.|.+... -.+...||..+ .|.
T Consensus 247 a----~~~~K~lW~SE~~s~~~--~~~g~g~~ar~ln~~yv~g~mT~~I~w~lVasyYp~lpy~~~gL~~A~ePWSG~Y~ 320 (669)
T PF02057_consen 247 A----KLTGKPLWSSEDYSTFN--YNVGAGCWARILNRNYVNGRMTAYINWPLVASYYPGLPYSRKGLMTANEPWSGHYE 320 (669)
T ss_dssp H----HHHT-EEEEEEEE-S-T--THHHHHHHHHHHHHHHHHH--SEEEEE-SEE-S-TTSTTTT-SSCE---TTT---B
T ss_pred H----HHhCCCeEEcCCccccc--CcCchHHHHHHHHhhhhccceEEEEeehhhhhhcCCCCCCCccceEecCCcccceE
Confidence 1 12499999999433321 22223333444433332334777888886433 12333444443 334
Q ss_pred CchHHHHHHHHH---H-HhcCCceeeeecCCceE-EEeeeeeeEEEEEE
Q 035723 460 NLPAGNIVDKLL---K-EWQTGEVTGHTDGHGSF-SFYGFLGEYTVSVK 503 (528)
Q Consensus 460 pKPAy~~~~~li---~-ew~t~~~~~~t~~~G~~-~~rgf~G~y~v~v~ 503 (528)
.-++..++...- + .|.--+..+.....|.| ++..=.|+|.+.++
T Consensus 321 v~~~iWv~AHtTQFt~pGW~YL~~~G~l~~gGSYVtLtd~~gn~tiiiE 369 (669)
T PF02057_consen 321 VDSPIWVTAHTTQFTQPGWRYLDSVGHLRGGGSYVTLTDGTGNYTIIIE 369 (669)
T ss_dssp --HHHHHHHHHHTT--TT-EEES--EE-TTS-EEEEEE-SSS-EEEEEE
T ss_pred ecceeeeeeehhccCCCCeEEccCccccCCCcceEEeecCCCCceEEEE
Confidence 455666665543 2 47632334666666665 33333678877665
No 61
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=79.40 E-value=2.4 Score=30.74 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCCccCCcceeeee
Q 035723 159 RAVTIHAADGSGDTLQGAEITIEQ 182 (528)
Q Consensus 159 ~~~~v~v~d~~g~p~~~a~v~v~~ 182 (528)
-.++|++.|++|+|++++.+.|..
T Consensus 15 I~ltVt~kda~G~pv~n~~f~l~r 38 (47)
T PF05688_consen 15 IPLTVTVKDANGNPVPNAPFTLTR 38 (47)
T ss_pred EEEEEEEECCCCCCcCCceEEEEe
Confidence 378899999999999999888874
No 62
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=78.88 E-value=10 Score=33.48 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=15.7
Q ss_pred CCEEEEEeEEEecCCCCeeEEEEEc
Q 035723 98 GCWSFLKGGFVLDSPSNLSILFFQN 122 (528)
Q Consensus 98 ~~Wt~l~g~~t~~~~~~~~~ly~E~ 122 (528)
+.|.+|.++|-- ....+.||+.+
T Consensus 61 ~~W~hva~v~d~--~~g~~~lYvnG 83 (133)
T smart00560 61 GVWVHLAGVYDG--GAGKLSLYVNG 83 (133)
T ss_pred CCEEEEEEEEEC--CCCeEEEEECC
Confidence 889999988762 22356777765
No 63
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=78.19 E-value=29 Score=32.26 Aligned_cols=97 Identities=9% Similarity=0.155 Sum_probs=64.9
Q ss_pred chHHHHHHHHHhcCceEEEeeeeeCCCCCCcccccCCChHHHHHHHHHHHHHHHHHccC--ceeEEEeeccccccccccc
Q 035723 235 TIADQMMEFVRSNQLIARGHNIFWEDPKYTPAWVRNLTGPALQSAVNSRIQSLMNKYKE--EFIHWDVSNEMLHFDFYEQ 312 (528)
Q Consensus 235 ~~~D~~v~~a~~~gi~vrGH~L~W~~~~~~P~W~~~~~~~~~~~~~~~~I~~v~~rY~g--~v~~WDVvNE~~~~~~~~~ 312 (528)
...+++++.|.++||+|.-..- ..|.|....+.+...+.-..-++++.++|+. .+..|=+-.|+...+ |..
T Consensus 65 d~l~~~L~~A~~~Gmkv~~Gl~------~~~~~w~~~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~~~~-~~~ 137 (166)
T PF14488_consen 65 DLLEMILDAADKYGMKVFVGLY------FDPDYWDQGDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEIDDYN-WNA 137 (166)
T ss_pred cHHHHHHHHHHHcCCEEEEeCC------CCchhhhccCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccCCcc-cch
Confidence 3578899999999999974322 2455665433332112222346667778876 689999999986544 332
Q ss_pred ccChHHHHHHHHHHHhhCCCcEEEeecCC
Q 035723 313 RLGHDATLHFYETAHQSDPLATLFMNEFN 341 (528)
Q Consensus 313 ~~G~d~~~~af~~Ar~~dP~a~L~~Ndy~ 341 (528)
.+..+..-+.+++..|+..+.|.-|.
T Consensus 138 ---~~~~~~l~~~lk~~s~~~Pv~ISpf~ 163 (166)
T PF14488_consen 138 ---PERFALLGKYLKQISPGKPVMISPFI 163 (166)
T ss_pred ---HHHHHHHHHHHHHhCCCCCeEEecCc
Confidence 46666667788888898888887664
No 64
>PF14299 PP2: Phloem protein 2
Probab=78.03 E-value=20 Score=32.85 Aligned_cols=86 Identities=20% Similarity=0.296 Sum_probs=51.4
Q ss_pred EEeCCCEEEEEEEEEEccC----CCcEEEEEEEEeCCe-eEE---eeeEEEeCCCEEEEEe-EEEecCCCCeeEEEE---
Q 035723 53 NLTPGTIYCFSIWLKIEGA----NSAHVRASLKTENSV-YNC---VGSAAAKQGCWSFLKG-GFVLDSPSNLSILFF--- 120 (528)
Q Consensus 53 ~l~~G~~Y~vSawVk~~~g----~~~~~~vt~~~~~g~-y~~---~~~~~v~~~~Wt~l~g-~~t~~~~~~~~~ly~--- 120 (528)
.|.+|++|.++.-+|+.+. ....+.+++...+++ +.. +.-.....++|.+++. .|..+... +..|+|
T Consensus 55 ~Lsp~t~Y~vy~v~kl~~~~~Gw~~~pv~~~v~~~~~~~~~~~~~~~~~~~r~dgW~Eie~GeF~~~~~~-~~ev~f~~~ 133 (154)
T PF14299_consen 55 MLSPGTTYAVYFVFKLKDDAYGWDSPPVEFSVKVPDGEKYEQERKVCLPKERGDGWMEIELGEFFNEGGD-DGEVEFSMY 133 (154)
T ss_pred EcCCCCEEEEEEEEEecCCCCCCCcCCEEEEEEeCCCccccceeeEEcCCCCCCCEEEEEcceEEecCCC-CcEEEEEEE
Confidence 4789999999999999875 233566666655543 221 1112345789999997 78877432 334433
Q ss_pred EcC-CCCcceEEEeccccCc
Q 035723 121 QNS-DDRDINIAVASASLQP 139 (528)
Q Consensus 121 E~~-~~~~~~f~vDd~~l~~ 139 (528)
|.. ..--.=+.|+.+.|.|
T Consensus 134 E~~~~~wK~GLiv~GieIRP 153 (154)
T PF14299_consen 134 EVDSGHWKGGLIVEGIEIRP 153 (154)
T ss_pred EecCCcccCeEEEEEEEEec
Confidence 221 0233345555555544
No 65
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=77.61 E-value=5.9 Score=41.91 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=39.5
Q ss_pred eeeeecCCceEEEeeeeeeEEEEEEeCC-eeeEEEEEEecCCCeeEEEEE
Q 035723 479 VTGHTDGHGSFSFYGFLGEYTVSVKYGN-RTANSTFSLCQGDETRHVTIR 527 (528)
Q Consensus 479 ~~~~t~~~G~~~~rgf~G~y~v~v~~~~-~~~~~~~~l~~~~~~~~~~i~ 527 (528)
....||.+|.|....--|+|.|+|+..| ..+++++.|..+..+ ++.|.
T Consensus 324 ~~~~Td~~G~f~~~l~pG~ytl~vs~~GY~~~~~~v~V~~~~~~-~~~~~ 372 (375)
T cd03863 324 HPVTTYKDGDYWRLLVPGTYKVTASARGYDPVTKTVEVDSKGAV-QVNFT 372 (375)
T ss_pred CceEECCCccEEEccCCeeEEEEEEEcCcccEEEEEEEcCCCcE-EEEEE
Confidence 4578999999998888999999999999 567778888887664 55554
No 66
>PF15432 Sec-ASP3: Accessory Sec secretory system ASP3
Probab=76.46 E-value=56 Score=29.09 Aligned_cols=78 Identities=12% Similarity=0.105 Sum_probs=49.5
Q ss_pred EEeCCCEEEEEEEEEEccCCCcEEEEEEEEeCCeeEEeeeEEEeCCCEEEEEeEEEecCCCCeeEEEEEcCCCCcceEEE
Q 035723 53 NLTPGTIYCFSIWLKIEGANSAHVRASLKTENSVYNCVGSAAAKQGCWSFLKGGFVLDSPSNLSILFFQNSDDRDINIAV 132 (528)
Q Consensus 53 ~l~~G~~Y~vSawVk~~~g~~~~~~vt~~~~~g~y~~~~~~~v~~~~Wt~l~g~~t~~~~~~~~~ly~E~~~~~~~~f~v 132 (528)
.|++|++|++.+-+......+.-++|+|-...+ ..++..+...++ ..|+.|.++-.-.|=+=+. +..+|-.
T Consensus 49 lLk~G~~Y~l~~~~~~~P~~svylki~F~dr~~--e~i~~~i~k~~~-----~~F~yP~~aysY~I~Lina--G~~~l~F 119 (128)
T PF15432_consen 49 LLKRGHTYQLKFNIDVVPENSVYLKIIFFDRQG--EEIEEQIIKNDS-----FEFTYPEEAYSYTISLINA--GCQSLTF 119 (128)
T ss_pred EecCCCEEEEEEEEEEccCCeEEEEEEEEccCC--CEeeEEEEecCc-----eEEeCCCCceEEEEEEeeC--CCCeeEE
Confidence 799999999999999998777778888864333 334444444432 6788887764444433332 2334444
Q ss_pred eccccCc
Q 035723 133 ASASLQP 139 (528)
Q Consensus 133 Dd~~l~~ 139 (528)
.++.|.+
T Consensus 120 ~~i~I~e 126 (128)
T PF15432_consen 120 HSIEISE 126 (128)
T ss_pred eEEEEEE
Confidence 5555543
No 67
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=75.37 E-value=7.4 Score=38.31 Aligned_cols=56 Identities=20% Similarity=0.251 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHcc-----CceeEEEeeccccccccccc--------ccC-hHHHHHHHH---HHHhhCCCcEEEe
Q 035723 279 AVNSRIQSLMNKYK-----EEFIHWDVSNEMLHFDFYEQ--------RLG-HDATLHFYE---TAHQSDPLATLFM 337 (528)
Q Consensus 279 ~~~~~I~~v~~rY~-----g~v~~WDVvNE~~~~~~~~~--------~~G-~d~~~~af~---~Ar~~dP~a~L~~ 337 (528)
.+.++|.-++.+|+ +.|..|.+=|||.. |.. .++ ++++.+.++ ++|++||+|+++=
T Consensus 105 y~~ewV~~l~~~~g~a~~~~gvk~y~lDNEP~L---W~~TH~dVHP~~~t~~El~~r~i~~AkaiK~~DP~a~v~G 177 (239)
T PF12891_consen 105 YMDEWVNYLVNKYGNASTNGGVKYYSLDNEPDL---WHSTHRDVHPEPVTYDELRDRSIEYAKAIKAADPDAKVFG 177 (239)
T ss_dssp EHHHHHHHHHHHH--TTSTTS--EEEESS-GGG---HHHHTTTT--S---HHHHHHHHHHHHHHHHHH-TTSEEEE
T ss_pred HHHHHHHHHHHHHhccccCCCceEEEecCchHh---hcccccccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEee
Confidence 35566777777765 46999999999973 321 112 356666555 4567899999983
No 68
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=75.08 E-value=7.6 Score=40.87 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=38.2
Q ss_pred eeeecCCceEEEeeeeeeEEEEEEeCC-eeeEEEEEEecCCCeeEEEEE
Q 035723 480 TGHTDGHGSFSFYGFLGEYTVSVKYGN-RTANSTFSLCQGDETRHVTIR 527 (528)
Q Consensus 480 ~~~t~~~G~~~~rgf~G~y~v~v~~~~-~~~~~~~~l~~~~~~~~~~i~ 527 (528)
...||.+|.|.+.--.|.|.|+++..| ...+++|.|..+..+ ++.+.
T Consensus 313 ~~~T~~~G~y~~~L~pG~y~v~vs~~Gy~~~~~~V~v~~~~~~-~~~f~ 360 (363)
T cd06245 313 RVYTKEGGYFHVLLAPGQHNINVIAEGYQQEHLPVVVSHDEAS-SVKIV 360 (363)
T ss_pred ceEeCCCcEEEEecCCceEEEEEEEeCceeEEEEEEEcCCCeE-EEEEE
Confidence 467999999999888899999999998 667888888877653 45544
No 69
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=74.22 E-value=6.1 Score=39.69 Aligned_cols=34 Identities=32% Similarity=0.348 Sum_probs=26.6
Q ss_pred CCCCEEEEeeecCCC---------------------------CChhHHHHHHHHHHHHHhc
Q 035723 397 LNLPIWLTEVDISGK---------------------------LDKETQAVYLEQVLREGFS 430 (528)
Q Consensus 397 ~glpI~iTE~dv~~~---------------------------~~~~~QA~~~~~~~~~~~s 430 (528)
..+|||+||++.++- .++-.|..+|+.++..+.+
T Consensus 205 ~sKpIwftE~GcpavDkgtNqPNvF~DpkSsEs~~P~~S~g~rDd~~Qr~~lea~~~~w~~ 265 (299)
T PF13547_consen 205 QSKPIWFTEYGCPAVDKGTNQPNVFLDPKSSESALPYFSNGARDDLIQRRYLEATLGYWDD 265 (299)
T ss_pred CCcceEEEecCCchhcCcCCCCccccCcccccccCCCCCCCCccHHHHHHHHHHHHHHhcC
Confidence 368999999999861 2567799999999876654
No 70
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=73.39 E-value=11 Score=39.63 Aligned_cols=50 Identities=12% Similarity=0.133 Sum_probs=39.3
Q ss_pred eeeeecCCceEEEeeeeeeEEEEEEeCC-eeeEEEEEEecCCCeeEEEEEC
Q 035723 479 VTGHTDGHGSFSFYGFLGEYTVSVKYGN-RTANSTFSLCQGDETRHVTIRV 528 (528)
Q Consensus 479 ~~~~t~~~G~~~~rgf~G~y~v~v~~~~-~~~~~~~~l~~~~~~~~~~i~~ 528 (528)
....||.+|.|.+..-.|.|.|+++..| ..+++++.+...+.++++.+.|
T Consensus 324 ~~~~Td~~G~f~~~l~~G~y~l~vs~~Gy~~~~~~v~v~~~g~~~~~~~~l 374 (374)
T cd03858 324 HDVTTAEDGDYWRLLLPGTYNVTASAPGYEPQTKSVVVPNDNSAVVVDFTL 374 (374)
T ss_pred eeeEECCCceEEEecCCEeEEEEEEEcCcceEEEEEEEecCCceEEEeeEC
Confidence 3578999999999888999999999988 5677788887734444666654
No 71
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=73.27 E-value=9.9 Score=34.03 Aligned_cols=43 Identities=21% Similarity=0.273 Sum_probs=35.3
Q ss_pred eeeeecCCceEEEeeeeeeEEEEEEeCCee--eEEEEEEecCCCe
Q 035723 479 VTGHTDGHGSFSFYGFLGEYTVSVKYGNRT--ANSTFSLCQGDET 521 (528)
Q Consensus 479 ~~~~t~~~G~~~~rgf~G~y~v~v~~~~~~--~~~~~~l~~~~~~ 521 (528)
.+..|+++|.|.|....|.|.|++..++.. ....|.|..++..
T Consensus 39 as~~t~~~G~Ys~~~epG~Y~V~l~~~g~~~~~vG~I~V~~dS~p 83 (134)
T PF08400_consen 39 ASVVTGEAGEYSFDVEPGVYRVTLKVEGRPPVYVGDITVYEDSKP 83 (134)
T ss_pred EEEEcCCCceEEEEecCCeEEEEEEECCCCceeEEEEEEecCCCC
Confidence 367899999999999999999999988743 4467888777643
No 72
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=72.96 E-value=8.5 Score=41.02 Aligned_cols=48 Identities=8% Similarity=0.068 Sum_probs=39.1
Q ss_pred eeeecCCceEEEeeeeeeEEEEEEeCC-eeeEEEEEEecCCCeeEEEEEC
Q 035723 480 TGHTDGHGSFSFYGFLGEYTVSVKYGN-RTANSTFSLCQGDETRHVTIRV 528 (528)
Q Consensus 480 ~~~t~~~G~~~~rgf~G~y~v~v~~~~-~~~~~~~~l~~~~~~~~~~i~~ 528 (528)
...|+.+|.|.+.--.|.|.|+|+..| ..+++++.|..+..+ ++.+.|
T Consensus 353 ~~~T~~~G~Y~~~L~pG~Ytv~vsa~Gy~~~~~~V~V~~~~~~-~vdf~L 401 (402)
T cd03865 353 DITSAKDGDYWRLLAPGNYKLTASAPGYLAVVKKVAVPYSPAV-RVDFEL 401 (402)
T ss_pred ccEECCCeeEEECCCCEEEEEEEEecCcccEEEEEEEcCCCcE-EEeEEe
Confidence 468899999998777899999999998 667789999888754 666543
No 73
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=71.83 E-value=8.6 Score=29.92 Aligned_cols=35 Identities=26% Similarity=0.268 Sum_probs=28.2
Q ss_pred eeeeeEEEEEEeCC-eeeEEEEEEecCCCeeEEEEEC
Q 035723 493 GFLGEYTVSVKYGN-RTANSTFSLCQGDETRHVTIRV 528 (528)
Q Consensus 493 gf~G~y~v~v~~~~-~~~~~~~~l~~~~~~~~~~i~~ 528 (528)
.-.|.|.|+++.+| ...++++++.++... .+.++|
T Consensus 32 l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~-~v~~~L 67 (71)
T PF08308_consen 32 LPPGEHTVTVEKPGYEPYTKTVTVKPGETT-TVNVTL 67 (71)
T ss_pred cCCccEEEEEEECCCeeEEEEEEECCCCEE-EEEEEE
Confidence 55899999999999 678899999977754 666654
No 74
>PF07675 Cleaved_Adhesin: Cleaved Adhesin Domain; InterPro: IPR011628 This conserved region is found in a group of haemagglutinins and peptidases, e.g. IPR001769 from INTERPRO, that, in Porphyromonas gingivalis (Bacteroides gingivalis), form components of the major extracellular virulence complex RgpA-Kgp - a mixture of proteinases and adhesins []. These domains are cleaved from the original polyprotein and form part of the adhesins [].; PDB: 3KM5_B 3M1H_A.
Probab=68.65 E-value=96 Score=28.65 Aligned_cols=79 Identities=15% Similarity=0.310 Sum_probs=38.3
Q ss_pred EEeCCCEEEEEEEEEEccCC--CcEEEEEEEEeC---CeeEEeeeEEEe--------------CCCEEEEEeEEEecCCC
Q 035723 53 NLTPGTIYCFSIWLKIEGAN--SAHVRASLKTEN---SVYNCVGSAAAK--------------QGCWSFLKGGFVLDSPS 113 (528)
Q Consensus 53 ~l~~G~~Y~vSawVk~~~g~--~~~~~vt~~~~~---g~y~~~~~~~v~--------------~~~Wt~l~g~~t~~~~~ 113 (528)
.| +|. .+++.||+....+ +....|-+.+.+ +.+..+...+.+ .+.|++..-. ||...
T Consensus 69 ~l-~g~-~~i~f~v~~~~~~~~~E~y~V~~Sttg~~~~~f~~i~e~t~~~~~~~~~~~~~~~~~~~w~~~~v~--Lp~gt 144 (167)
T PF07675_consen 69 QL-SGA-QTISFWVKSQDASYGPEHYEVLYSTTGNNIADFTTILEETITANTFTNAEKIEGKTQGEWTERTVD--LPAGT 144 (167)
T ss_dssp ---TT--EEEEEEEEECTTTC---EEEEEEESS-SSGGGEEECEEEE---SS-SSSSSSSSS-----EEEEEE--E-TT-
T ss_pred Cc-CCC-CEEEEEEEeccCCCCCceEEEEEecCCCChhheEEeeeeeecccccccccccccccCccEEEEEEe--CCCCC
Confidence 46 774 6999999997742 455655334322 236655432222 3689988764 56665
Q ss_pred CeeEEE-EEcCCCCcceEEEecccc
Q 035723 114 NLSILF-FQNSDDRDINIAVASASL 137 (528)
Q Consensus 114 ~~~~ly-~E~~~~~~~~f~vDd~~l 137 (528)
.-+-+. +.+ ....-|+||||+|
T Consensus 145 ~Y~afrh~~~--td~~~l~iDDV~v 167 (167)
T PF07675_consen 145 KYFAFRHYNS--TDAFYLMIDDVTV 167 (167)
T ss_dssp -EEEEEEES----SS-EEEEEEEEE
T ss_pred cEEEEEeccC--CCceEEEeccEEC
Confidence 433332 333 3456899999975
No 75
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=67.69 E-value=42 Score=35.02 Aligned_cols=92 Identities=13% Similarity=0.174 Sum_probs=56.0
Q ss_pred chHHHHHHHHHhcCceEEEe--eeeeCCCCCCcccccCC----------Ch--HH-HHHHHHHHHHHHHHHccCceeEEE
Q 035723 235 TIADQMMEFVRSNQLIARGH--NIFWEDPKYTPAWVRNL----------TG--PA-LQSAVNSRIQSLMNKYKEEFIHWD 299 (528)
Q Consensus 235 ~~~D~~v~~a~~~gi~vrGH--~L~W~~~~~~P~W~~~~----------~~--~~-~~~~~~~~I~~v~~rY~g~v~~WD 299 (528)
+...++++.|+++||++--+ ..-|+.+ .+.... .. ++ ..+.+...++++++||+-.+.-+|
T Consensus 138 Div~El~~A~rk~Glk~G~Y~S~~dw~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfD 213 (346)
T PF01120_consen 138 DIVGELADACRKYGLKFGLYYSPWDWHHP----DYPPDEEGDENGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFD 213 (346)
T ss_dssp -HHHHHHHHHHHTT-EEEEEEESSSCCCT----TTTSSCHCHHCC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEE
T ss_pred CHHHHHHHHHHHcCCeEEEEecchHhcCc----ccCCCccCCcccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEec
Confidence 34678899999999998643 2244432 221111 00 12 345788999999999943455556
Q ss_pred eecccccccccccccChHHHHHHHHHHHhhCCCcEEEee
Q 035723 300 VSNEMLHFDFYEQRLGHDATLHFYETAHQSDPLATLFMN 338 (528)
Q Consensus 300 VvNE~~~~~~~~~~~G~d~~~~af~~Ar~~dP~a~L~~N 338 (528)
..+.. ....--....++.+|+..|++.+.-+
T Consensus 214 g~~~~--------~~~~~~~~~~~~~i~~~qp~~ii~~r 244 (346)
T PF01120_consen 214 GGWPD--------PDEDWDSAELYNWIRKLQPDVIINNR 244 (346)
T ss_dssp STTSC--------CCTHHHHHHHHHHHHHHSTTSEEECC
T ss_pred CCCCc--------cccccCHHHHHHHHHHhCCeEEEecc
Confidence 55443 11112247889999999998877654
No 76
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=65.14 E-value=44 Score=35.49 Aligned_cols=92 Identities=18% Similarity=0.300 Sum_probs=57.7
Q ss_pred chHHHHHHHHHhcCceEEE-ee-eeeCCCCCCcccccC-------CChHHHHHH---HHHHHHHHHHHccCceeEEEeec
Q 035723 235 TIADQMMEFVRSNQLIARG-HN-IFWEDPKYTPAWVRN-------LTGPALQSA---VNSRIQSLMNKYKEEFIHWDVSN 302 (528)
Q Consensus 235 ~~~D~~v~~a~~~gi~vrG-H~-L~W~~~~~~P~W~~~-------~~~~~~~~~---~~~~I~~v~~rY~g~v~~WDVvN 302 (528)
+...++.+.|+++||++-- |. +-|+. |.|... ...+...+. +...|++++++|+..+.-+|...
T Consensus 128 Div~el~~A~rk~Glk~G~Y~S~~DW~~----p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~~ 203 (384)
T smart00812 128 DLVGELADAVRKRGLKFGLYHSLFDWFN----PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGGW 203 (384)
T ss_pred chHHHHHHHHHHcCCeEEEEcCHHHhCC----CccccccccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCCC
Confidence 5677899999999999852 22 34553 443211 011223334 48899999999998666667543
Q ss_pred ccccccccccccChH-HHHHHHHHHHhhCCCc-EEEeec
Q 035723 303 EMLHFDFYEQRLGHD-ATLHFYETAHQSDPLA-TLFMNE 339 (528)
Q Consensus 303 E~~~~~~~~~~~G~d-~~~~af~~Ar~~dP~a-~L~~Nd 339 (528)
+.. +.. -....++.+|+..|++ .+++|+
T Consensus 204 ~~~---------~~~~~~~~l~~~~~~~qP~~~~vvvn~ 233 (384)
T smart00812 204 EAP---------DDYWRSKEFLAWLYNLSPVKDTVVVND 233 (384)
T ss_pred CCc---------cchhcHHHHHHHHHHhCCCCceEEEEc
Confidence 321 111 2467788899999987 455665
No 77
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=65.07 E-value=16 Score=38.90 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=36.6
Q ss_pred eeeeecCCceEEEee-eeeeEEEEEEeCC-eeeEEEEEEecCCCeeEEEEE
Q 035723 479 VTGHTDGHGSFSFYG-FLGEYTVSVKYGN-RTANSTFSLCQGDETRHVTIR 527 (528)
Q Consensus 479 ~~~~t~~~G~~~~rg-f~G~y~v~v~~~~-~~~~~~~~l~~~~~~~~~~i~ 527 (528)
....||.+|.| +|. -.|.|.|+++..| ..++++++|..+..+ ++.+.
T Consensus 342 ~~~~T~~~G~y-~r~l~pG~Y~l~vs~~Gy~~~t~~v~V~~~~~~-~~df~ 390 (392)
T cd03864 342 HDVTSGTLGDY-FRLLLPGTYTVTASAPGYQPSTVTVTVGPAEAT-LVNFQ 390 (392)
T ss_pred cceEECCCCcE-EecCCCeeEEEEEEEcCceeEEEEEEEcCCCcE-EEeeE
Confidence 35788999999 664 4799999999998 678888999877654 45554
No 78
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=62.76 E-value=38 Score=30.23 Aligned_cols=91 Identities=9% Similarity=0.257 Sum_probs=55.7
Q ss_pred hHHHHHH-hhcCeeccC----CcccC--cccccCCCccCcchHHHHHHHHHhcCceEEEee-eeeCCC--CCCcccccC-
Q 035723 202 PYQKWFV-ERFNAAVFE----NELKW--YATEPEQGKINYTIADQMMEFVRSNQLIARGHN-IFWEDP--KYTPAWVRN- 270 (528)
Q Consensus 202 ~y~~~~~-~~Fn~vt~e----N~~kW--~~~Ep~~G~~~~~~~D~~v~~a~~~gi~vrGH~-L~W~~~--~~~P~W~~~- 270 (528)
.+.+.++ .+.|++++- +.+-| ..+.+.-.....+..-++++.|.++||+|-+.. +.|+.. ..-|+|+..
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~~HPeW~~~~ 83 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFSWDEDAAERHPEWFVRD 83 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeeecChHHHHhCCceeeEC
Confidence 3455554 578888872 22222 223222222335567789999999999987654 446532 136888741
Q ss_pred ---C----------------ChHHHHHHHHHHHHHHHHHcc
Q 035723 271 ---L----------------TGPALQSAVNSRIQSLMNKYK 292 (528)
Q Consensus 271 ---~----------------~~~~~~~~~~~~I~~v~~rY~ 292 (528)
- .....++.+...|+++++||.
T Consensus 84 ~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y~ 124 (132)
T PF14871_consen 84 ADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRYD 124 (132)
T ss_pred CCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcCC
Confidence 0 012356788888999999995
No 79
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=61.16 E-value=34 Score=37.56 Aligned_cols=90 Identities=20% Similarity=0.243 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHh-C-CCCEEEEeeecCCCC----------ChhHHHHHHHHHHHHHh-----cCCCeeEEEEEeeecCC
Q 035723 384 LPLMRAILDKLAT-L-NLPIWLTEVDISGKL----------DKETQAVYLEQVLREGF-----SHPSVNGIMLWTALHPN 446 (528)
Q Consensus 384 ~~~i~~~L~~~a~-~-glpI~iTE~dv~~~~----------~~~~QA~~~~~~~~~~~-----s~p~v~gi~~Wg~~d~~ 446 (528)
+..++..|+-... . +.||.|||=++.... .+..+.+|+...|..+. .--.|.|.+.|.+.|..
T Consensus 391 P~Glr~~L~yiK~~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~dgvnv~GYf~WSLmDnf 470 (524)
T KOG0626|consen 391 PWGLRKLLNYIKDKYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKEDGVNVKGYFVWSLLDNF 470 (524)
T ss_pred cHHHHHHHHHHHhhcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHhcCCceeeEEEeEcccch
Confidence 3468888887655 3 578999999887631 23344556665555443 22469999999998853
Q ss_pred C-----CCcccccCCC------CCCchHHHHHHHHHHH
Q 035723 447 G-----CYQMCLTDNN------LQNLPAGNIVDKLLKE 473 (528)
Q Consensus 447 ~-----~~~~gL~d~d------~~pKPAy~~~~~li~e 473 (528)
- ...+||+.=| ..||-....+.++|+.
T Consensus 471 Ew~~Gy~~RFGlyyVDf~d~l~R~pK~Sa~wy~~fl~~ 508 (524)
T KOG0626|consen 471 EWLDGYKVRFGLYYVDFKDPLKRYPKLSAKWYKKFLKG 508 (524)
T ss_pred hhhcCcccccccEEEeCCCCCcCCchhHHHHHHHHHcC
Confidence 2 2468888744 4577788888888853
No 80
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=60.93 E-value=8.9 Score=31.67 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=23.9
Q ss_pred cceEEEEEeCCCCCccCCcceeeeeecCC
Q 035723 158 KRAVTIHAADGSGDTLQGAEITIEQVSKD 186 (528)
Q Consensus 158 k~~~~v~v~d~~g~p~~~a~v~v~~~~~~ 186 (528)
...++++|+|.+|+|+++..|++.....+
T Consensus 19 ~~~i~v~v~D~~Gnpv~~~~V~f~~~~~~ 47 (92)
T smart00634 19 AITLTATVTDANGNPVAGQEVTFTTPSGG 47 (92)
T ss_pred cEEEEEEEECCCCCCcCCCEEEEEECCCc
Confidence 45788999999999999999888765443
No 81
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=57.02 E-value=66 Score=37.62 Aligned_cols=75 Identities=15% Similarity=0.334 Sum_probs=54.3
Q ss_pred hhcCeeccCCcccCcccccCCCccCcchHHHHHHHHHhcCceEEEeeee-eCCCCCCcccccCCChHHHHHHHHHHHHHH
Q 035723 209 ERFNAAVFENELKWYATEPEQGKINYTIADQMMEFVRSNQLIARGHNIF-WEDPKYTPAWVRNLTGPALQSAVNSRIQSL 287 (528)
Q Consensus 209 ~~Fn~vt~eN~~kW~~~Ep~~G~~~~~~~D~~v~~a~~~gi~vrGH~L~-W~~~~~~P~W~~~~~~~~~~~~~~~~I~~v 287 (528)
.++|+++.- . +-....++++|.+.||-|-=-..+ ||. .| ..++.++.+...|+++
T Consensus 333 ~n~N~vRts--H-------------yP~~~~~ydLcDelGllV~~Ea~~~~~~---~~------~~~~~~k~~~~~i~~m 388 (808)
T COG3250 333 ANMNSVRTS--H-------------YPNSEEFYDLCDELGLLVIDEAMIETHG---MP------DDPEWRKEVSEEVRRM 388 (808)
T ss_pred cCCCEEEec--C-------------CCCCHHHHHHHHHhCcEEEEecchhhcC---CC------CCcchhHHHHHHHHHH
Confidence 579999864 2 223467899999999988644433 332 22 3345567788899999
Q ss_pred HHHccC--ceeEEEeecccccc
Q 035723 288 MNKYKE--EFIHWDVSNEMLHF 307 (528)
Q Consensus 288 ~~rY~g--~v~~WDVvNE~~~~ 307 (528)
++|=+. .|..|=+-||..++
T Consensus 389 ver~knHPSIiiWs~gNE~~~g 410 (808)
T COG3250 389 VERDRNHPSIIIWSLGNESGHG 410 (808)
T ss_pred HHhccCCCcEEEEeccccccCc
Confidence 998775 89999999997653
No 82
>PF12866 DUF3823: Protein of unknown function (DUF3823); InterPro: IPR024278 This is a family of uncharacterised proteins from Bacteroidetes. These proteins have characteristic DN and DR sequence-motifs but their function is not known.; PDB: 3HN5_B 4EIU_A.
Probab=56.85 E-value=34 Score=33.44 Aligned_cols=48 Identities=21% Similarity=0.309 Sum_probs=29.9
Q ss_pred ceeeeecCCceE-EEeeeeeeEEEEEEeCCe-----eeEEEEEEecCCCeeEEEE
Q 035723 478 EVTGHTDGHGSF-SFYGFLGEYTVSVKYGNR-----TANSTFSLCQGDETRHVTI 526 (528)
Q Consensus 478 ~~~~~t~~~G~~-~~rgf~G~y~v~v~~~~~-----~~~~~~~l~~~~~~~~~~i 526 (528)
+.......||.| ...-|.|+|.|....+.. .-+..++|. |..++.+.|
T Consensus 58 ~~~~~v~qDGtf~n~~lF~G~Yki~~~~G~fp~~~~~dti~v~i~-G~t~~d~eV 111 (222)
T PF12866_consen 58 PQDVYVKQDGTFRNTKLFDGDYKIVPKNGNFPWVVPVDTIEVDIK-GNTTQDFEV 111 (222)
T ss_dssp SEEEEB-TTSEEEEEEE-SEEEEEEE-CTSCSBSCCE--EEEEES-SCEEEEEEE
T ss_pred CcceEEccCCceeeeeEeccceEEEEcCCCCcccCCCccEEEEec-CceEEeEEe
Confidence 456788899999 999999999999954433 344455555 444444443
No 83
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=55.05 E-value=42 Score=33.64 Aligned_cols=160 Identities=16% Similarity=0.184 Sum_probs=83.6
Q ss_pred hHHHHHHHHHhcCceEEEeeeeeCCCCCCcccccCCChHHHHHHHHHHHHHHHHHcc--CceeEEEeecccccccccccc
Q 035723 236 IADQMMEFVRSNQLIARGHNIFWEDPKYTPAWVRNLTGPALQSAVNSRIQSLMNKYK--EEFIHWDVSNEMLHFDFYEQR 313 (528)
Q Consensus 236 ~~D~~v~~a~~~gi~vrGH~L~W~~~~~~P~W~~~~~~~~~~~~~~~~I~~v~~rY~--g~v~~WDVvNE~~~~~~~~~~ 313 (528)
....+...+.+.|+++-- -+|.. |+= ...+++-|..-..-|. +.|...-|=||.+..+ .
T Consensus 88 ~le~v~pAa~~~g~kv~l--Giw~t----dd~---------~~~~~~til~ay~~~~~~d~v~~v~VGnEal~r~----~ 148 (305)
T COG5309 88 TLENVLPAAEASGFKVFL--GIWPT----DDI---------HDAVEKTILSAYLPYNGWDDVTTVTVGNEALNRN----D 148 (305)
T ss_pred hhhhhHHHHHhcCceEEE--EEeec----cch---------hhhHHHHHHHHHhccCCCCceEEEEechhhhhcC----C
Confidence 445678888999987742 24642 221 1222222222222233 3677888889998544 2
Q ss_pred cCh----HHHHHHHHHHHhhCCCcEEEeec-CCcccCCCCcchhHHHHHHHHHHHHhCCceeeEEeeeccC--CC-C--C
Q 035723 314 LGH----DATLHFYETAHQSDPLATLFMNE-FNVVETCSDENSTVDRYISRLRELKRGGVLMDGIGLESHF--TV-P--N 383 (528)
Q Consensus 314 ~G~----d~~~~af~~Ar~~dP~a~L~~Nd-y~~~~~~~~~~~~~~~~~~~v~~l~~~G~~iDgIG~Q~H~--~~-p--~ 383 (528)
+.. +|+...=-..++++=+.++.--| ++.+... ...++. .|=|+.+.|- .. + +
T Consensus 149 ~tasql~~~I~~vrsav~~agy~gpV~T~dsw~~~~~n-------p~l~~~----------SDfia~N~~aYwd~~~~a~ 211 (305)
T COG5309 149 LTASQLIEYIDDVRSAVKEAGYDGPVTTVDSWNVVINN-------PELCQA----------SDFIAANAHAYWDGQTVAN 211 (305)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCceeecccceeeeCC-------hHHhhh----------hhhhhcccchhccccchhh
Confidence 222 45554444555555444443222 2222110 111111 1444444453 22 2 1
Q ss_pred HH--HHHHHHHHHH-hC--CCCEEEEeeecCCC--------CChhHHHHHHHHHHHHHhcC
Q 035723 384 LP--LMRAILDKLA-TL--NLPIWLTEVDISGK--------LDKETQAVYLEQVLREGFSH 431 (528)
Q Consensus 384 ~~--~i~~~L~~~a-~~--glpI~iTE~dv~~~--------~~~~~QA~~~~~~~~~~~s~ 431 (528)
.. -+.+.|++.- .. .+++||||.++++. .+.+.|++++++++-...+.
T Consensus 212 ~~~~f~~~q~e~vqsa~g~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~~ 272 (305)
T COG5309 212 AAGTFLLEQLERVQSACGTKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRSC 272 (305)
T ss_pred hhhHHHHHHHHHHHHhcCCCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhcc
Confidence 11 1334466652 22 38999999999984 35678999999998766664
No 84
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=54.84 E-value=1.7e+02 Score=30.93 Aligned_cols=197 Identities=16% Similarity=0.180 Sum_probs=102.1
Q ss_pred cCeeccCCcccCcccccCCCccCcchHHHHHHHHHhcCceEEEeeeeeCCC---------------------CCCccccc
Q 035723 211 FNAAVFENELKWYATEPEQGKINYTIADQMMEFVRSNQLIARGHNIFWEDP---------------------KYTPAWVR 269 (528)
Q Consensus 211 Fn~vt~eN~~kW~~~Ep~~G~~~~~~~D~~v~~a~~~gi~vrGH~L~W~~~---------------------~~~P~W~~ 269 (528)
|...+++ +||. |..|-..+.++++.|.++||.-.=..--+|.. ...|.|..
T Consensus 18 fG~MRlp--~~~~------~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv~LaTKlp~~~~ 89 (391)
T COG1453 18 FGCMRLP--LKEQ------GSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKVKLATKLPSWPV 89 (391)
T ss_pred cceeecc--cccC------CCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccceEEEEeecCCccc
Confidence 4445554 5554 55555666666777777766543222122211 01344433
Q ss_pred CCChHHHHHHHHHHHHHHHHHccC-ceeEEEe--eccccccccccc--ccChHHHHHHHHHHHhhCCCcEEEeecCCccc
Q 035723 270 NLTGPALQSAVNSRIQSLMNKYKE-EFIHWDV--SNEMLHFDFYEQ--RLGHDATLHFYETAHQSDPLATLFMNEFNVVE 344 (528)
Q Consensus 270 ~~~~~~~~~~~~~~I~~v~~rY~g-~v~~WDV--vNE~~~~~~~~~--~~G~d~~~~af~~Ar~~dP~a~L~~Ndy~~~~ 344 (528)
+ .++.|++++.+-.+|++- -|+.+=+ +|+ ..|.. .+| +|..++++--+-|+-.=+|+...
T Consensus 90 ~-----~~edm~r~fneqLekl~~Dy~D~yliH~l~~----e~~~k~~~~g------~~df~~kak~eGkIr~~GFSfHg 154 (391)
T COG1453 90 K-----DREDMERIFNEQLEKLGTDYIDYYLIHGLNT----ETWEKIERLG------VFDFLEKAKAEGKIRNAGFSFHG 154 (391)
T ss_pred c-----CHHHHHHHHHHHHHHhCCchhhhhhhccccH----HHHHHHHccC------hHHHHHHHHhcCcEEEeeecCCC
Confidence 2 345566677777777653 2222211 222 11321 222 45566665555666666777632
Q ss_pred CCCCcchhHHHHHHHHHHHHhCCceeeEEeeeccCCCCCHHHHHHHHHHHHhCCCCEEEEeeecCCC----CChhHHH--
Q 035723 345 TCSDENSTVDRYISRLRELKRGGVLMDGIGLESHFTVPNLPLMRAILDKLATLNLPIWLTEVDISGK----LDKETQA-- 418 (528)
Q Consensus 345 ~~~~~~~~~~~~~~~v~~l~~~G~~iDgIG~Q~H~~~p~~~~i~~~L~~~a~~glpI~iTE~dv~~~----~~~~~QA-- 418 (528)
+ .+.++++++.+ +.|=+-+|..+-.-.-....+.|+.-++.|++|-|-|=-=... ..++.+-
T Consensus 155 -s----------~e~~~~iv~a~-~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~vP~~~~~l~ 222 (391)
T COG1453 155 -S----------TEVFKEIVDAY-PWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYNVPEKLEELC 222 (391)
T ss_pred -C----------HHHHHHHHhcC-CcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccCCCHHHHHHH
Confidence 1 23345666666 6898877766533211122567777778899999987321110 1122211
Q ss_pred --H-----HHHHHHHHHhcCCCeeEEEEEeee
Q 035723 419 --V-----YLEQVLREGFSHPSVNGIMLWTAL 443 (528)
Q Consensus 419 --~-----~~~~~~~~~~s~p~v~gi~~Wg~~ 443 (528)
. =.+-.++-+++||.|.-+ +=|..
T Consensus 223 ~~~~~~~sP~~wa~R~~~shp~V~~v-lsGm~ 253 (391)
T COG1453 223 RPASPKRSPAEWALRYLLSHPEVTTV-LSGMN 253 (391)
T ss_pred HhcCCCCCcHHHHHHHHhcCCCeEEE-ecCCC
Confidence 0 133456778899999865 33443
No 85
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=53.76 E-value=37 Score=35.82 Aligned_cols=48 Identities=19% Similarity=0.257 Sum_probs=35.1
Q ss_pred eeeecCCceEEEeeeeeeEEEEEEeCC-eeeEEE-EEEecCCCeeEEEEEC
Q 035723 480 TGHTDGHGSFSFYGFLGEYTVSVKYGN-RTANST-FSLCQGDETRHVTIRV 528 (528)
Q Consensus 480 ~~~t~~~G~~~~rgf~G~y~v~v~~~~-~~~~~~-~~l~~~~~~~~~~i~~ 528 (528)
...||.+|.|...--.|.|.|+|+..| ..++++ +.|..+..+ ++.+.|
T Consensus 323 ~~~td~~G~y~~~l~~G~Y~l~vs~~Gf~~~~~~~v~v~~g~~~-~~~~~L 372 (372)
T cd03868 323 NVTTAKFGDYWRLLLPGTYTITAVAPGYEPSTVTDVVVKEGEAT-SVNFTL 372 (372)
T ss_pred ceEeCCCceEEecCCCEEEEEEEEecCCCceEEeeEEEcCCCeE-EEeeEC
Confidence 468999999986566899999999988 444444 457666554 666654
No 86
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=53.63 E-value=34 Score=36.45 Aligned_cols=50 Identities=14% Similarity=-0.002 Sum_probs=38.3
Q ss_pred eeeeecCCceEEEeeeeeeEEEEEEeCC-eeeEEEEEEecC-CCeeEEEEEC
Q 035723 479 VTGHTDGHGSFSFYGFLGEYTVSVKYGN-RTANSTFSLCQG-DETRHVTIRV 528 (528)
Q Consensus 479 ~~~~t~~~G~~~~rgf~G~y~v~v~~~~-~~~~~~~~l~~~-~~~~~~~i~~ 528 (528)
....||.+|.|...--.|.|.|+++..| ...+++++|... ..+..+.++|
T Consensus 344 ~~~~Td~~G~y~~~l~~G~y~l~vs~~Gy~~~~~~v~v~~~~~~~~~~d~~l 395 (395)
T cd03867 344 HDITTAEDGDYWRLLPPGIHIVSAQAPGYTKVMKRVTLPARMKRAGRVDFVL 395 (395)
T ss_pred cceEECCCceEEEecCCCcEEEEEEecCeeeEEEEEEeCCcCCCceEeeeEC
Confidence 4578999999986667899999999998 667788888653 2345666654
No 87
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=51.83 E-value=34 Score=35.64 Aligned_cols=93 Identities=16% Similarity=0.214 Sum_probs=59.7
Q ss_pred HHHHHHHhcCceEEEeeee-eCCCCCCcccccCC-Ch-HHHHHHHHHHHHHHHHHccCceeEEEeecccccc-ccccccc
Q 035723 239 QMMEFVRSNQLIARGHNIF-WEDPKYTPAWVRNL-TG-PALQSAVNSRIQSLMNKYKEEFIHWDVSNEMLHF-DFYEQRL 314 (528)
Q Consensus 239 ~~v~~a~~~gi~vrGH~L~-W~~~~~~P~W~~~~-~~-~~~~~~~~~~I~~v~~rY~g~v~~WDVvNE~~~~-~~~~~~~ 314 (528)
..++.|.+||++|.|-.++ |. ..++|+..+ .. ++.+..+.+-+-+++..|+ ++.|-|-=|.... ....+.+
T Consensus 50 ~~idaAHknGV~Vlgti~~e~~---~~~~~~~~lL~~~~~~~~~~a~kLv~lak~yG--fDGw~iN~E~~~~~~~~~~~l 124 (339)
T cd06547 50 DWINAAHRNGVPVLGTFIFEWT---GQVEWLEDFLKKDEDGSFPVADKLVEVAKYYG--FDGWLINIETELGDAEKAKRL 124 (339)
T ss_pred HHHHHHHhcCCeEEEEEEecCC---CchHHHHHHhccCcccchHHHHHHHHHHHHhC--CCceEeeeeccCCcHHHHHHH
Confidence 4789999999999985432 32 134566543 23 5566777788888888885 7777776676431 1011111
Q ss_pred ChHHHHHHHHHHHhhCCCcEEEe
Q 035723 315 GHDATLHFYETAHQSDPLATLFM 337 (528)
Q Consensus 315 G~d~~~~af~~Ar~~dP~a~L~~ 337 (528)
.++++...+.+++..|+.+++-
T Consensus 125 -~~F~~~L~~~~~~~~~~~~v~W 146 (339)
T cd06547 125 -IAFLRYLKAKLHENVPGSLVIW 146 (339)
T ss_pred -HHHHHHHHHHHhhcCCCcEEEE
Confidence 2456677777788888887754
No 88
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=49.89 E-value=48 Score=35.07 Aligned_cols=39 Identities=15% Similarity=0.224 Sum_probs=33.0
Q ss_pred eeeecCCceEEEeeeeeeEEEEEEeCC-eeeEEEEEEecC
Q 035723 480 TGHTDGHGSFSFYGFLGEYTVSVKYGN-RTANSTFSLCQG 518 (528)
Q Consensus 480 ~~~t~~~G~~~~rgf~G~y~v~v~~~~-~~~~~~~~l~~~ 518 (528)
...||++|.|.+.---|.|.|+|+..| ...++++.|..+
T Consensus 324 ~~~T~~~G~y~~~l~pG~Y~v~vsa~Gy~~~~~~v~v~~~ 363 (376)
T cd03866 324 PYRTNVNGEYFLLLLPGKYMINVTAPGFKTVITNVIIPYN 363 (376)
T ss_pred EEEECCCceEEEecCCeeEEEEEEeCCcceEEEEEEeCCC
Confidence 458999999988777899999999998 567888888754
No 89
>PF15425 DUF4627: Domain of unknown function (DUF4627); PDB: 3SEE_A.
Probab=49.86 E-value=1.3e+02 Score=28.43 Aligned_cols=80 Identities=18% Similarity=0.241 Sum_probs=43.6
Q ss_pred CEEEEEEEEEEccCC-CcEEEEEEEEeCCe-----eEE---------------eeeEEEeCCCEEEEEeEEEecC-----
Q 035723 58 TIYCFSIWLKIEGAN-SAHVRASLKTENSV-----YNC---------------VGSAAAKQGCWSFLKGGFVLDS----- 111 (528)
Q Consensus 58 ~~Y~vSawVk~~~g~-~~~~~vt~~~~~g~-----y~~---------------~~~~~v~~~~Wt~l~g~~t~~~----- 111 (528)
..|.+|+|.|....+ .-.|-|+++.+||+ ++. ...+.-..|.|+.+...|-+..
T Consensus 87 ~mYtLsF~AkA~t~g~qv~V~Irl~~~ngK~~~~Ffmr~~~d~~sqpn~s~a~y~~~ikkAgkWtkv~~~fdfgkvvNai 166 (212)
T PF15425_consen 87 GMYTLSFDAKADTNGTQVHVFIRLHNDNGKDNQRFFMRRDYDAQSQPNQSDAQYNFKIKKAGKWTKVSVYFDFGKVVNAI 166 (212)
T ss_dssp SEEEEEEEEEESSTT-EEEEEEE-B-TTS-B---EEEETT--TTT-TTSBSS-EEEE--STT--EEEEEEEEEEEEES-S
T ss_pred ceEEEEEEeecccCCCcEEEEEEEecCCCccceeEEEEeccccccCccchhhhhhhccccCCceEEEEEEeehhHHhHHH
Confidence 469999999988754 33455555544542 110 0113445699999999885431
Q ss_pred ---CC----------------CeeEEEEEcCCCCcceEEEeccccC
Q 035723 112 ---PS----------------NLSILFFQNSDDRDINIAVASASLQ 138 (528)
Q Consensus 112 ---~~----------------~~~~ly~E~~~~~~~~f~vDd~~l~ 138 (528)
++ ....|-|++. +.+....||+|+|.
T Consensus 167 ~s~k~n~~~~vt~td~~~a~Lkdf~i~iq~q-~k~s~vlId~VsLk 211 (212)
T PF15425_consen 167 SSFKMNPAEEVTDTDDDAAILKDFYICIQSQ-NKPSSVLIDDVSLK 211 (212)
T ss_dssp SBTTT-TT--EEE--TT-HHHHSEEEEEE---STT-EEEEEEEEEE
T ss_pred hhhccCCCCccccCccchhhhcceEEEEEEc-CCCceEEecccEec
Confidence 00 1345667776 67777888888874
No 90
>PF03944 Endotoxin_C: delta endotoxin; InterPro: IPR005638 This family contains insecticidal toxins produced by Bacillus species of bacteria. During spore formation the bacteria produce crystals of this protein. When an insect ingests these proteins, they are activated by proteolytic cleavage. The N terminus is cleaved in all of the proteins and a C-terminal extension is cleaved in some members. Once activated, the endotoxin binds to the gut epithelium and causes cell lysis by the formation of cation-selective channels, which leads to death. The activated region of the delta toxin is composed of three distinct structural domains: an N-terminal helical bundle domain (IPR005639 from INTERPRO) involved in membrane insertion and pore formation; a beta-sheet central domain (IPR001178 from INTERPRO) involved in receptor binding; and a C-terminal beta-sandwich domain that interacts with the N-terminal domain to form a channel [, ]. This entry represents the conserved C-terminal domain.; PDB: 1DLC_A 1JI6_A 1W99_A 1CIY_A 1I5P_A 2C9K_A 3EB7_A.
Probab=49.04 E-value=73 Score=28.61 Aligned_cols=35 Identities=17% Similarity=0.195 Sum_probs=23.8
Q ss_pred eEEEecCCC-CeeEEEEEcCCCCcceEEEeccccCcc
Q 035723 105 GGFVLDSPS-NLSILFFQNSDDRDINIAVASASLQPF 140 (528)
Q Consensus 105 g~~t~~~~~-~~~~ly~E~~~~~~~~f~vDd~~l~~~ 140 (528)
..|+++... ..+.|+++.. ....+||||.+.+.|+
T Consensus 107 ~~~~~~~~~~~~~~i~i~~~-~~~~~v~IDkIEFIPv 142 (143)
T PF03944_consen 107 TPFTFSSNQSITITISIQNI-SSNGNVYIDKIEFIPV 142 (143)
T ss_dssp SEEEESTSEEEEEEEEEESS-TTTS-EEEEEEEEEEC
T ss_pred ceEEecCCCceEEEEEEEec-CCCCeEEEEeEEEEeC
Confidence 357775554 4567778875 4559999999888764
No 91
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=48.62 E-value=58 Score=33.02 Aligned_cols=47 Identities=26% Similarity=0.547 Sum_probs=35.5
Q ss_pred HHHHHHHHhCCceeeEEeeeccCCCCCHHHHHHHHHHHHhCCCCEEEEeeecC
Q 035723 357 ISRLRELKRGGVLMDGIGLESHFTVPNLPLMRAILDKLATLNLPIWLTEVDIS 409 (528)
Q Consensus 357 ~~~v~~l~~~G~~iDgIG~Q~H~~~p~~~~i~~~L~~~a~~glpI~iTE~dv~ 409 (528)
...|+.|.++| +|-+|+. ..|++.+.+..++...++++|.||+ +.+.
T Consensus 137 ~~rie~l~~ag--~Dlla~E---Tip~i~Ea~Aiv~l~~~~s~p~wIS-fT~~ 183 (300)
T COG2040 137 RPRIEALNEAG--ADLLACE---TLPNITEAEAIVQLVQEFSKPAWIS-FTLN 183 (300)
T ss_pred HHHHHHHHhCC--CcEEeec---ccCChHHHHHHHHHHHHhCCceEEE-EEeC
Confidence 34567777887 7888763 3477888888888888889999998 5555
No 92
>PRK07534 methionine synthase I; Validated
Probab=48.56 E-value=1.1e+02 Score=31.90 Aligned_cols=83 Identities=17% Similarity=0.160 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhhCCC---cEEEeecCCcccC---C-C--CcchhHHHHHHHHHHHHhCCceeeEEeeeccCCCCCHHHH
Q 035723 317 DATLHFYETAHQSDPL---ATLFMNEFNVVET---C-S--DENSTVDRYISRLRELKRGGVLMDGIGLESHFTVPNLPLM 387 (528)
Q Consensus 317 d~~~~af~~Ar~~dP~---a~L~~Ndy~~~~~---~-~--~~~~~~~~~~~~v~~l~~~G~~iDgIG~Q~H~~~p~~~~i 387 (528)
++...+.+.||++.-+ -.++..+.+.... + + +.......|...++.|.+.| +|.|.+. ..|++.++
T Consensus 85 ~l~~~av~lAr~a~~~~~~~~~VaGsIGP~g~~l~~~~~~~~~e~~~~~~~qi~~l~~~g--vD~l~~E---T~p~l~E~ 159 (336)
T PRK07534 85 ELNRAAAEIAREVADKAGRKVIVAGSVGPTGEIMEPMGALTHALAVEAFHEQAEGLKAGG--ADVLWVE---TISAPEEI 159 (336)
T ss_pred HHHHHHHHHHHHHHHhcCCccEEEEecCCCccccCCCCCCCHHHHHHHHHHHHHHHHhCC--CCEEEEe---ccCCHHHH
Confidence 4567788888877421 2344444332110 0 1 11123455667777787776 6777552 23688888
Q ss_pred HHHHHHHHhCCCCEEEE
Q 035723 388 RAILDKLATLNLPIWLT 404 (528)
Q Consensus 388 ~~~L~~~a~~glpI~iT 404 (528)
+.+++.+...++|+|++
T Consensus 160 ~a~~~~~~~~~~Pv~vS 176 (336)
T PRK07534 160 RAAAEAAKLAGMPWCGT 176 (336)
T ss_pred HHHHHHHHHcCCeEEEE
Confidence 88888888889999986
No 93
>PF04491 Pox_T4_N: Poxvirus T4 protein, N terminus; InterPro: IPR007580 Poxvirus T4 protein is thought to be secreted or retained in the endoplasmic reticulum if the protein also contains an additional C-terminal region (IPR007579 from INTERPRO). M-T4 of myxoma virus (O55698 from SWISSPROT) is thought to protect infected lymphocytes from apoptosis and modulate the inflammatory response to virus infection [].
Probab=48.18 E-value=19 Score=25.71 Aligned_cols=28 Identities=29% Similarity=0.554 Sum_probs=21.0
Q ss_pred cccccccccCcccccCCCceeecCCCCceEEEEe
Q 035723 6 FTAYTECKELPEQPLYNGGMLKNHPPENFSSIAH 39 (528)
Q Consensus 6 ~~~~~~c~~~~~~~~~~gg~~~~~~g~~~sl~vt 39 (528)
|+..++| ++|+..||.|. +|+-|-+++.
T Consensus 16 ~~~~t~C----~~~~~~GGLIt--egNGfki~~h 43 (46)
T PF04491_consen 16 KSSRTGC----HRPQGPGGLIT--EGNGFKIFAH 43 (46)
T ss_pred EeecCCc----ccccCCCcEEe--eCCcEEEEEe
Confidence 4568999 99999999994 4555756654
No 94
>PF03746 LamB_YcsF: LamB/YcsF family; InterPro: IPR005501 This entry represents the uncharacterised protein family UPF0271, including LamB. The lam locus of Emericella nidulans (Aspergillus nidulans) consists of two divergently transcribed genes, lamA and lamB, involved in the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression []. The exact molecular function of the proteins in this family is unknown.; PDB: 1V6T_A 1XW8_A 2XU2_A 2DFA_A.
Probab=48.01 E-value=1e+02 Score=30.54 Aligned_cols=92 Identities=13% Similarity=0.147 Sum_probs=53.2
Q ss_pred chHHHHHHHHHhcCceEEEeeeeeCCCCCCccccc------CCChHHHHHHHHHHHHH---HHHHccCceeEEEeecccc
Q 035723 235 TIADQMMEFVRSNQLIARGHNIFWEDPKYTPAWVR------NLTGPALQSAVNSRIQS---LMNKYKEEFIHWDVSNEML 305 (528)
Q Consensus 235 ~~~D~~v~~a~~~gi~vrGH~L~W~~~~~~P~W~~------~~~~~~~~~~~~~~I~~---v~~rY~g~v~~WDVvNE~~ 305 (528)
....+.+++|+++|+.+-.|+- .|+-.. .++++++++.+..-|.. ++...+.++.+-- |
T Consensus 42 ~~M~~tv~lA~~~gV~iGAHPs-------yPD~~gFGRr~m~~s~~el~~~v~yQigaL~~~a~~~g~~l~hVK----P- 109 (242)
T PF03746_consen 42 ETMRRTVRLAKEHGVAIGAHPS-------YPDREGFGRRSMDISPEELRDSVLYQIGALQAIAAAEGVPLHHVK----P- 109 (242)
T ss_dssp HHHHHHHHHHHHTT-EEEEE----------S-TTTTT-S-----HHHHHHHHHHHHHHHHHHHHHTT--EEEE-------
T ss_pred HHHHHHHHHHHHcCCEeccCCC-------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeeEEec----c-
Confidence 4567889999999999999984 454331 35778887777666554 5667777776543 3
Q ss_pred ccccccccc-ChHHHHHHHHHHHhhCCCcEEEee
Q 035723 306 HFDFYEQRL-GHDATLHFYETAHQSDPLATLFMN 338 (528)
Q Consensus 306 ~~~~~~~~~-G~d~~~~af~~Ar~~dP~a~L~~N 338 (528)
|+-.+.... .++......+++++.+|+..|+.-
T Consensus 110 HGALYn~~~~d~~lA~~i~~ai~~~~~~l~l~~~ 143 (242)
T PF03746_consen 110 HGALYNMAAKDEELARAIAEAIKAFDPDLPLYGL 143 (242)
T ss_dssp -HHHHHHHHH-HHHHHHHHHHHHHH-TT-EEEEE
T ss_pred cHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEEc
Confidence 333222211 235667778899999999988764
No 95
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=45.69 E-value=22 Score=28.10 Aligned_cols=27 Identities=19% Similarity=0.375 Sum_probs=18.9
Q ss_pred EEEEEeCCCCCccCCcceeeeeecCCC
Q 035723 161 VTIHAADGSGDTLQGAEITIEQVSKDF 187 (528)
Q Consensus 161 ~~v~v~d~~g~p~~~a~v~v~~~~~~F 187 (528)
+.=+|.|++|+|+++|.|.+.......
T Consensus 2 I~G~V~d~~g~pv~~a~V~l~~~~~~~ 28 (82)
T PF13620_consen 2 ISGTVTDATGQPVPGATVTLTDQDGGT 28 (82)
T ss_dssp EEEEEEETTSCBHTT-EEEET--TTTE
T ss_pred EEEEEEcCCCCCcCCEEEEEEEeeCCC
Confidence 345788999999999999988654443
No 96
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=45.62 E-value=39 Score=36.63 Aligned_cols=59 Identities=15% Similarity=0.325 Sum_probs=41.5
Q ss_pred chHHHHHHHHHhcCceEE------EeeeeeCCCC---CCcccccC--------CC--hHHHHHHHHHHHHHHHHHccC
Q 035723 235 TIADQMMEFVRSNQLIAR------GHNIFWEDPK---YTPAWVRN--------LT--GPALQSAVNSRIQSLMNKYKE 293 (528)
Q Consensus 235 ~~~D~~v~~a~~~gi~vr------GH~L~W~~~~---~~P~W~~~--------~~--~~~~~~~~~~~I~~v~~rY~g 293 (528)
+.+-.+|++|+-+||+|. ||+.-|+.-. .+|.|-.. ++ .+...+.+.+++.+|.+-|.+
T Consensus 250 eDv~evV~yarlRGIRVlpEfD~PgHt~sWg~g~~~fl~p~~~~~~~~~~~gplnP~~n~tydvls~i~~dv~evFp~ 327 (542)
T KOG2499|consen 250 EDVSEVVEYARLRGIRVLPEFDTPGHTGSWGPGYPDFLTPCWSSFEVQPPFGPLNPTNNHTYDVLSEIFEDVSEVFPD 327 (542)
T ss_pred HHHHHHHHHHHhccceeeecccCCcccccccCCCCcccCCcccccccCCCCcCCCCCchhHHHHHHHHHHHHHHhCcH
Confidence 345578999999999987 9999996431 13444321 11 246788889999999987764
No 97
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=45.57 E-value=2.9e+02 Score=29.54 Aligned_cols=77 Identities=17% Similarity=0.216 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHccCceeEEEeecccccccccccccChHHHHHHHHHHHhhCCCcEEEeecCCcccCCCCcchhHHHHHH
Q 035723 279 AVNSRIQSLMNKYKEEFIHWDVSNEMLHFDFYEQRLGHDATLHFYETAHQSDPLATLFMNEFNVVETCSDENSTVDRYIS 358 (528)
Q Consensus 279 ~~~~~I~~v~~rY~g~v~~WDVvNE~~~~~~~~~~~G~d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~ 358 (528)
.++.||+..+.+=-+-++-+|-.|-+.+ ++.+.+.+|+..-.++..+. |.+ . | ....+.|++
T Consensus 99 vVe~Fv~ka~~nGidvfRiFDAlND~RN------------l~~ai~a~kk~G~h~q~~i~-YT~-s-P---vHt~e~yv~ 160 (472)
T COG5016 99 VVEKFVEKAAENGIDVFRIFDALNDVRN------------LKTAIKAAKKHGAHVQGTIS-YTT-S-P---VHTLEYYVE 160 (472)
T ss_pred HHHHHHHHHHhcCCcEEEechhccchhH------------HHHHHHHHHhcCceeEEEEE-ecc-C-C---cccHHHHHH
Confidence 4677888777765567788888887643 46777778877666665553 332 1 1 234567778
Q ss_pred HHHHHHhCCceeeEEee
Q 035723 359 RLRELKRGGVLMDGIGL 375 (528)
Q Consensus 359 ~v~~l~~~G~~iDgIG~ 375 (528)
++++|.+.|+ |-|-+
T Consensus 161 ~akel~~~g~--DSIci 175 (472)
T COG5016 161 LAKELLEMGV--DSICI 175 (472)
T ss_pred HHHHHHHcCC--CEEEe
Confidence 8888888775 54443
No 98
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=45.47 E-value=1.5e+02 Score=30.12 Aligned_cols=118 Identities=18% Similarity=0.209 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHhhCCC-----cEEEeecCCcc-------cCCCC----cchhHHHHHHHHHHHHhCCceeeEEeeeccC
Q 035723 316 HDATLHFYETAHQSDPL-----ATLFMNEFNVV-------ETCSD----ENSTVDRYISRLRELKRGGVLMDGIGLESHF 379 (528)
Q Consensus 316 ~d~~~~af~~Ar~~dP~-----a~L~~Ndy~~~-------~~~~~----~~~~~~~~~~~v~~l~~~G~~iDgIG~Q~H~ 379 (528)
.++...+.+.||++... -.++....+.. ++.++ ...-.+.|...++.|.++| +|.|.+..-.
T Consensus 81 ~~l~~~av~lA~~a~~~~~~~~~~~VaGsiGP~ga~l~g~~y~~~~~~~~~~~~~~~~~q~~~l~~~g--vD~l~~ET~~ 158 (305)
T PF02574_consen 81 EELNRAAVELAREAADEYGSGRKVLVAGSIGPYGAYLSGSEYPGDYGLSFEELRDFHREQAEALADAG--VDLLLFETMP 158 (305)
T ss_dssp HHHHHHHHHHHHHHHTT---TT-SEEEEEEE--S--------CTTCTT-HHHHHHHHHHHHHHHHHTT---SEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhhccCCCccEEEEEcccccccchhhhccccccccHHHHHHHHHHHHHHHHhcC--CCEEEEecCc
Confidence 46778888888876444 12333322211 11111 1122345667788888887 7988886544
Q ss_pred CCCCHHHHHHHHHHHHh-CCCCEEEE-----eeecCCCCChhHHHHHHHHHHHHHhcCCCeeEEEEE
Q 035723 380 TVPNLPLMRAILDKLAT-LNLPIWLT-----EVDISGKLDKETQAVYLEQVLREGFSHPSVNGIMLW 440 (528)
Q Consensus 380 ~~p~~~~i~~~L~~~a~-~glpI~iT-----E~dv~~~~~~~~QA~~~~~~~~~~~s~p~v~gi~~W 440 (528)
+..+++.+++...+ .++|+||+ ........+...-++.++..+..+ .+.+.+|-+=
T Consensus 159 ---~~~E~~aa~~a~~~~~~~p~~is~~~~~~~~l~~g~~~~~~~~~~~~~~~~~--~~~~~~iGvN 220 (305)
T PF02574_consen 159 ---SLAEAKAALEAIKEVTGLPVWISFSCKDSGRLRDGTSLEDAVQVIDELLRAL--PPGPDAIGVN 220 (305)
T ss_dssp ----CSCHHHHHHHHHHHHHCCSSEEE-EEEEES-TCTTBCTTSHHHHHHHHHHH--CTT-SEEEEE
T ss_pred ---HHHHHHHHHHHHHhhhhhhceeccchhhhccccCCCCHHHHHHHHHHHHHHh--hhhhheEEcC
Confidence 33345555555555 57787765 111212223333455666666655 4555555333
No 99
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=45.32 E-value=16 Score=30.75 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=18.3
Q ss_pred cceEEEEEeCCCCCccCCcceee
Q 035723 158 KRAVTIHAADGSGDTLQGAEITI 180 (528)
Q Consensus 158 k~~~~v~v~d~~g~p~~~a~v~v 180 (528)
+..++++|.|.+|+||+|..|..
T Consensus 24 ~~tltatV~D~~gnpv~g~~V~f 46 (100)
T PF02369_consen 24 TNTLTATVTDANGNPVPGQPVTF 46 (100)
T ss_dssp -EEEEEEEEETTSEB-TS-EEEE
T ss_pred cEEEEEEEEcCCCCCCCCCEEEE
Confidence 45788999999999999999988
No 100
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=43.46 E-value=1.3e+02 Score=30.85 Aligned_cols=50 Identities=28% Similarity=0.515 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhCCceeeEEeeeccCCCCCHHHHHHHHHHHHhC--CCCEEEEeeecC
Q 035723 354 DRYISRLRELKRGGVLMDGIGLESHFTVPNLPLMRAILDKLATL--NLPIWLTEVDIS 409 (528)
Q Consensus 354 ~~~~~~v~~l~~~G~~iDgIG~Q~H~~~p~~~~i~~~L~~~a~~--glpI~iTE~dv~ 409 (528)
..|.++++.|.+.| +|.|-+.. .|++.+++.+++..... ++|+|++ |.+.
T Consensus 140 ~~~~~q~~~l~~~g--vD~i~~ET---~~~~~E~~~~~~~~~~~~~~~pv~is-~~~~ 191 (304)
T PRK09485 140 DFHRPRIEALAEAG--ADLLACET---IPNLDEAEALVELLKEEFPGVPAWLS-FTLR 191 (304)
T ss_pred HHHHHHHHHHhhCC--CCEEEEec---cCCHHHHHHHHHHHHHhcCCCcEEEE-EEeC
Confidence 44556677777766 68876632 36777888888877645 8999997 3443
No 101
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=43.03 E-value=1.3e+02 Score=28.54 Aligned_cols=66 Identities=15% Similarity=0.356 Sum_probs=35.3
Q ss_pred CCCEEEEEEEEEEccCCCcEEEEEEEE------------eCCeeE-Eee------eEEEeCCCEEEEEeEEEecCCCCee
Q 035723 56 PGTIYCFSIWLKIEGANSAHVRASLKT------------ENSVYN-CVG------SAAAKQGCWSFLKGGFVLDSPSNLS 116 (528)
Q Consensus 56 ~G~~Y~vSawVk~~~g~~~~~~vt~~~------------~~g~y~-~~~------~~~v~~~~Wt~l~g~~t~~~~~~~~ 116 (528)
.=..++|++|||+........-++... .+|.+. .++ ......+.|++|..+|.-. ...+
T Consensus 29 ~l~~fTv~~Wv~~~~~~~~~~ifSy~~~~~~~~~~l~~~~~g~~~~~i~~~~~~~~~~~~~g~W~hv~~t~d~~--~g~~ 106 (201)
T cd00152 29 PLQAFTLCLWVYTDLSTREYSLFSYATKGQDNELLLYKEKDGGYSLYIGGKEVTFKVPESDGAWHHICVTWEST--SGIA 106 (201)
T ss_pred ChhhEEEEEEEEecCCCCCeEEEEEeCCCCCCeEEEEEcCCCeEEEEEcCEEEEEeccCCCCCEEEEEEEEECC--CCcE
Confidence 667899999999976321111111111 122211 111 1222577899998887643 2246
Q ss_pred EEEEEcC
Q 035723 117 ILFFQNS 123 (528)
Q Consensus 117 ~ly~E~~ 123 (528)
.||+.+.
T Consensus 107 ~lyvnG~ 113 (201)
T cd00152 107 ELWVNGK 113 (201)
T ss_pred EEEECCE
Confidence 6776653
No 102
>PF07611 DUF1574: Protein of unknown function (DUF1574); InterPro: IPR011468 This is a family of hypothetical proteins found in Leptospira interrogans and other bacteria.
Probab=42.07 E-value=28 Score=36.33 Aligned_cols=62 Identities=15% Similarity=0.349 Sum_probs=46.0
Q ss_pred cchHHHHHHHHHhcCceEEEeeeeeCCCCCCcccccCCChHHHHHHHHHHHHHHHHHccCceeEEEeecc
Q 035723 234 YTIADQMMEFVRSNQLIARGHNIFWEDPKYTPAWVRNLTGPALQSAVNSRIQSLMNKYKEEFIHWDVSNE 303 (528)
Q Consensus 234 ~~~~D~~v~~a~~~gi~vrGH~L~W~~~~~~P~W~~~~~~~~~~~~~~~~I~~v~~rY~g~v~~WDVvNE 303 (528)
+.-.+++++.|+++||++. |+|..- .|+.-..+....+.+.|...++.+.+++ .+..|| +||
T Consensus 251 ~~F~e~~L~~ake~~I~~v---l~~P~V--~~~~~~~~~~~~~~~~w~~~i~~l~~~~--~~~~~d-mn~ 312 (345)
T PF07611_consen 251 FFFLEKFLKLAKENGIPVV---LWWPKV--SPPYEKLYKELKVYESWWPIIKKLAKEY--GIPFLD-MNE 312 (345)
T ss_pred HHHHHHHHHHHHHcCCcEE---EEEecc--CHHHHHHHHhhchhhHHHHHHHHHHhcC--CceEec-ccC
Confidence 3446889999999999985 667542 4455444444567888999999999988 477788 677
No 103
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=41.98 E-value=1.7e+02 Score=25.14 Aligned_cols=17 Identities=24% Similarity=0.577 Sum_probs=13.2
Q ss_pred CCEEEEEEEEEEccCCC
Q 035723 57 GTIYCFSIWLKIEGANS 73 (528)
Q Consensus 57 G~~Y~vSawVk~~~g~~ 73 (528)
...++|++|||......
T Consensus 21 ~~~fTi~~w~~~~~~~~ 37 (157)
T PF13385_consen 21 SGSFTISFWVKPDSPSS 37 (157)
T ss_dssp GTEEEEEEEEEESS--S
T ss_pred CCCEEEEEEEEeCCCCC
Confidence 78999999999988743
No 104
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=41.29 E-value=32 Score=35.48 Aligned_cols=22 Identities=14% Similarity=0.157 Sum_probs=13.1
Q ss_pred ccCcchHHHHHHHHHhcCceEE
Q 035723 231 KINYTIADQMMEFVRSNQLIAR 252 (528)
Q Consensus 231 ~~~~~~~D~~v~~a~~~gi~vr 252 (528)
-+.-++.|++.+||++.|+.+.
T Consensus 105 clt~~rwd~l~~F~~~tG~~li 126 (319)
T PF03662_consen 105 CLTMSRWDELNNFAQKTGLKLI 126 (319)
T ss_dssp -------HHHHHHHHHHT-EEE
T ss_pred ccchhHHHHHHHHHHHhCCEEE
Confidence 3444567999999999999886
No 105
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=40.74 E-value=3.8e+02 Score=27.32 Aligned_cols=88 Identities=8% Similarity=0.017 Sum_probs=48.4
Q ss_pred CCccCcchHHHHHHHHHhcCce---EEEeeeeeCCCCCCcccccCCChHHHHHHHHHHHHHHHHHccCceeEEEeecccc
Q 035723 229 QGKINYTIADQMMEFVRSNQLI---ARGHNIFWEDPKYTPAWVRNLTGPALQSAVNSRIQSLMNKYKEEFIHWDVSNEML 305 (528)
Q Consensus 229 ~G~~~~~~~D~~v~~a~~~gi~---vrGH~L~W~~~~~~P~W~~~~~~~~~~~~~~~~I~~v~~rY~g~v~~WDVvNE~~ 305 (528)
.|..|++...++++++.++|+. +.|++= ... .+ -.+.-++.++.+++.-+||+. |+--.
T Consensus 23 ~g~iD~~~l~~lv~~li~~Gv~Gi~v~GstG---------E~~-~L----t~eEr~~v~~~~~~~~~grvp---vi~Gv- 84 (309)
T cd00952 23 TDTVDLDETARLVERLIAAGVDGILTMGTFG---------ECA-TL----TWEEKQAFVATVVETVAGRVP---VFVGA- 84 (309)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECcccc---------cch-hC----CHHHHHHHHHHHHHHhCCCCC---EEEEe-
Confidence 5788888888888888887653 334321 111 11 135556777777777777663 11000
Q ss_pred cccccccccChHHHHHHHHHHHhhCCCcEEEeecC
Q 035723 306 HFDFYEQRLGHDATLHFYETAHQSDPLATLFMNEF 340 (528)
Q Consensus 306 ~~~~~~~~~G~d~~~~af~~Ar~~dP~a~L~~Ndy 340 (528)
...+.+-..+.-+.|+++..++.+++.=|
T Consensus 85 ------~~~~t~~ai~~a~~A~~~Gad~vlv~~P~ 113 (309)
T cd00952 85 ------TTLNTRDTIARTRALLDLGADGTMLGRPM 113 (309)
T ss_pred ------ccCCHHHHHHHHHHHHHhCCCEEEECCCc
Confidence 01122333344455555666777776554
No 106
>smart00606 CBD_IV Cellulose Binding Domain Type IV.
Probab=40.26 E-value=2.4e+02 Score=24.25 Aligned_cols=78 Identities=13% Similarity=0.226 Sum_probs=37.4
Q ss_pred EEEeCCCEEEEEEEEEEccCCCcEEEEEEEEeCCeeEEeeeEEEe-CC---CEEEEEeEEEecCCCCeeEEEEEcCCCCc
Q 035723 52 HNLTPGTIYCFSIWLKIEGANSAHVRASLKTENSVYNCVGSAAAK-QG---CWSFLKGGFVLDSPSNLSILFFQNSDDRD 127 (528)
Q Consensus 52 ~~l~~G~~Y~vSawVk~~~g~~~~~~vt~~~~~g~y~~~~~~~v~-~~---~Wt~l~g~~t~~~~~~~~~ly~E~~~~~~ 127 (528)
|.+.....|.|++.+.-..+. ..+.|.+-..+|.. ++++.++ .+ .|+.+.....++.....+.+-++++ + .
T Consensus 47 vd~~~~g~~~i~~~~as~~~~-~~i~v~~d~~~G~~--~~~~~~p~tg~~~~~~~~~~~v~~~~G~~~l~~~~~~~-~-~ 121 (129)
T smart00606 47 VDFGSSGAYTFTARVASGNAG-GSIELRLDSPTGTL--VGTVDVPSTGGWQTYQTVSATVTLPAGVHDVYLVFKGG-N-Y 121 (129)
T ss_pred EecCCCCceEEEEEEeCCCCC-ceEEEEECCCCCcE--EEEEEeCCCCCCccCEEEEEEEccCCceEEEEEEEECC-C-c
Confidence 556566889999876443322 23434332223543 3333333 33 4566655444433323333444443 2 2
Q ss_pred ceEEEeccc
Q 035723 128 INIAVASAS 136 (528)
Q Consensus 128 ~~f~vDd~~ 136 (528)
+.+|.+.
T Consensus 122 --~~ld~~~ 128 (129)
T smart00606 122 --FNIDWFR 128 (129)
T ss_pred --EEEEEEE
Confidence 6666553
No 107
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=40.23 E-value=87 Score=25.65 Aligned_cols=66 Identities=21% Similarity=0.353 Sum_probs=43.3
Q ss_pred CCCCCchHHHHHHHHH---HHhcCCceeeeecCCceEEEeeeeeeEEEEEEeCCeeeEEEEEEecCCCeeEEEEE
Q 035723 456 NNLQNLPAGNIVDKLL---KEWQTGEVTGHTDGHGSFSFYGFLGEYTVSVKYGNRTANSTFSLCQGDETRHVTIR 527 (528)
Q Consensus 456 ~d~~pKPAy~~~~~li---~ew~t~~~~~~t~~~G~~~~rgf~G~y~v~v~~~~~~~~~~~~l~~~~~~~~~~i~ 527 (528)
.+.+ |...++..|+ .|+. ....+++.|.|.|.+--|...|.+-++..+....++-+.+.- .++.|.
T Consensus 16 ~~G~--Pv~gAyVRLLD~sgEFt---aEvvts~~G~FRFfaapG~WtvRal~~~g~~d~~V~a~~g~v-~~v~v~ 84 (85)
T PF07210_consen 16 RDGE--PVGGAYVRLLDSSGEFT---AEVVTSATGDFRFFAAPGSWTVRALSRGGNGDAMVTAEGGGV-HEVDVT 84 (85)
T ss_pred cCCc--CCCCeEEEEEcCCCCeE---EEEEecCCccEEEEeCCCceEEEEEccCCCCceEEecCCCce-EEEEee
Confidence 4444 4444444445 3564 257899999999999999999999887655555554444332 355554
No 108
>TIGR03066 Gem_osc_para_1 Gemmata obscuriglobus paralogous family TIGR03066. This model represents an uncharacterized paralogous family in Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. This family shows sequence similarity to TIGR03067, which is also found in Gemmata obscuriglobus as well as in a few other species.
Probab=40.13 E-value=92 Score=27.01 Aligned_cols=67 Identities=15% Similarity=0.183 Sum_probs=38.6
Q ss_pred EEEEEeCCe-eEEeeeEEEeCCCEEEEEeEEEecCCCCeeEEEEEcCCCCcceEEEeccccCccchhhhhhhhhhhhhhh
Q 035723 78 ASLKTENSV-YNCVGSAAAKQGCWSFLKGGFVLDSPSNLSILFFQNSDDRDINIAVASASLQPFTDEQWRFNQQYIINTE 156 (528)
Q Consensus 78 vt~~~~~g~-y~~~~~~~v~~~~Wt~l~g~~t~~~~~~~~~ly~E~~~~~~~~f~vDd~~l~~~~~~~w~~~a~~~Ie~~ 156 (528)
|.|. .+|+ -+++|+ .|||.+..|+|++... .+.+-+... +.+. ..++++..+++
T Consensus 38 leF~-~dGKL~v~~gn----ng~~~~~~Gty~L~G~--kLtL~~~p~---g~t~-k~~Vtv~~l~~-------------- 92 (111)
T TIGR03066 38 IEFA-KDGKLVVTIGE----KGKEVKADGTYKLDGN--KLTLTLKAG---GKEK-KETLTVKKLTD-------------- 92 (111)
T ss_pred EEEc-CCCeEEEecCC----CCcEeccCceEEEECC--EEEEEEcCC---Cccc-cceEEEEEecC--------------
Confidence 3444 5666 345554 7899999999999755 233322321 2221 13444433322
Q ss_pred hcceEEEEEeCCCCCcc
Q 035723 157 RKRAVTIHAADGSGDTL 173 (528)
Q Consensus 157 Rk~~~~v~v~d~~g~p~ 173 (528)
=++.+.|++|+++
T Consensus 93 ----~~Lvl~d~dg~~~ 105 (111)
T TIGR03066 93 ----DELVGKDPDGKKD 105 (111)
T ss_pred ----CeEEEEcCCCCEe
Confidence 2577889998876
No 109
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=39.20 E-value=46 Score=34.72 Aligned_cols=62 Identities=21% Similarity=0.293 Sum_probs=40.7
Q ss_pred cCCCCCCCce---EEEEEeCCCEEEEEEEEEEccCCCcEEEEEEEEeCCeeEEeeeEEEeCCCEEEEEeEE
Q 035723 40 FSTGFYTPAF---ILHNLTPGTIYCFSIWLKIEGANSAHVRASLKTENSVYNCVGSAAAKQGCWSFLKGGF 107 (528)
Q Consensus 40 ~Rt~~w~G~~---~~~~l~~G~~Y~vSawVk~~~g~~~~~~vt~~~~~g~y~~~~~~~v~~~~Wt~l~g~~ 107 (528)
-|+++|=|-. ..+.|+.|++|+|..-+|-.-.+.-++...|...++. -.+-+|.|+.|+|++
T Consensus 86 vR~~t~lng~~~~~S~~LelG~dYefkv~lkaR~pG~~hvh~m~Nv~~~G------piiGPg~w~~I~Gs~ 150 (399)
T TIGR03079 86 VRLSTKVNGMPVFISGPLEIGRDYEFEVTLQARIPGRHHMHAMLNVKDAG------PIAGPGKWMNITGSW 150 (399)
T ss_pred EEeeEEECCEeecceeEeecCCceeEEEEEeeccCCcccceeEEEeccCC------CCcCCceEEEeecch
Confidence 4666665443 2447999999999998887665554554434433432 233479999999963
No 110
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=39.06 E-value=3.8e+02 Score=30.28 Aligned_cols=92 Identities=16% Similarity=0.163 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHccCceeEEEeeccccccc------------------c-cccccChHHHHHHHHHHHhhCCCcEEEeec
Q 035723 279 AVNSRIQSLMNKYKEEFIHWDVSNEMLHFD------------------F-YEQRLGHDATLHFYETAHQSDPLATLFMNE 339 (528)
Q Consensus 279 ~~~~~I~~v~~rY~g~v~~WDVvNE~~~~~------------------~-~~~~~G~d~~~~af~~Ar~~dP~a~L~~Nd 339 (528)
.++.|++..+.+--+.++-.|-.|+..+-- + .......+|+....+.+.++..+ .|.+-|
T Consensus 97 vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad-~I~IkD 175 (596)
T PRK14042 97 VVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMGCD-SIAIKD 175 (596)
T ss_pred HHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCC-EEEeCC
Confidence 466678877777777888899999875310 0 01123357777777777776654 667776
Q ss_pred CCcccCCCCcchhHHHHHHHHHHHHhC-CceeeEEeeeccCCC
Q 035723 340 FNVVETCSDENSTVDRYISRLRELKRG-GVLMDGIGLESHFTV 381 (528)
Q Consensus 340 y~~~~~~~~~~~~~~~~~~~v~~l~~~-G~~iDgIG~Q~H~~~ 381 (528)
-.-+ .++....++++.|+++ ++| |++|+|-..
T Consensus 176 taG~-------l~P~~v~~lv~alk~~~~ip---i~~H~Hnt~ 208 (596)
T PRK14042 176 MAGL-------LTPTVTVELYAGLKQATGLP---VHLHSHSTS 208 (596)
T ss_pred cccC-------CCHHHHHHHHHHHHhhcCCE---EEEEeCCCC
Confidence 4332 2456667778887764 344 678888644
No 111
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=38.63 E-value=3.8e+02 Score=27.67 Aligned_cols=224 Identities=9% Similarity=0.086 Sum_probs=98.4
Q ss_pred hcCeeccCCcccCcccccCCCccCcchHHHHHHHHHhcCceEEEeeeeeCCCCCCcc-cccCCCh-HHHHHHHHHHHHHH
Q 035723 210 RFNAAVFENELKWYATEPEQGKINYTIADQMMEFVRSNQLIARGHNIFWEDPKYTPA-WVRNLTG-PALQSAVNSRIQSL 287 (528)
Q Consensus 210 ~Fn~vt~eN~~kW~~~Ep~~G~~~~~~~D~~v~~a~~~gi~vrGH~L~W~~~~~~P~-W~~~~~~-~~~~~~~~~~I~~v 287 (528)
+.|.++.= .+.|.. ..|+.+..+.+.||-|.--. ..|. =+.+.+| +.--..+.++...+
T Consensus 66 giNtIRVY------~vdp~~------nHd~CM~~~~~aGIYvi~Dl-------~~p~~sI~r~~P~~sw~~~l~~~~~~v 126 (314)
T PF03198_consen 66 GINTIRVY------SVDPSK------NHDECMSAFADAGIYVILDL-------NTPNGSINRSDPAPSWNTDLLDRYFAV 126 (314)
T ss_dssp T-SEEEES---------TTS--------HHHHHHHHHTT-EEEEES--------BTTBS--TTS------HHHHHHHHHH
T ss_pred CCCEEEEE------EeCCCC------CHHHHHHHHHhCCCEEEEec-------CCCCccccCCCCcCCCCHHHHHHHHHH
Confidence 58888774 666665 45889999999999886321 1331 1112222 12333455565666
Q ss_pred HHHccC--ceeEEEeecccccccccccccChHHHHHHHHHHHh----hCC-CcEEEeecCCcccCCCCcchhHHHHHHHH
Q 035723 288 MNKYKE--EFIHWDVSNEMLHFDFYEQRLGHDATLHFYETAHQ----SDP-LATLFMNEFNVVETCSDENSTVDRYISRL 360 (528)
Q Consensus 288 ~~rY~g--~v~~WDVvNE~~~~~~~~~~~G~d~~~~af~~Ar~----~dP-~a~L~~Ndy~~~~~~~~~~~~~~~~~~~v 360 (528)
+..++. .+-..=+=||.++...= ..-.-|++.+.|-+|+ ... .+.+- |...+.. . .+ ..+.
T Consensus 127 id~fa~Y~N~LgFf~GNEVin~~~~--t~aap~vKAavRD~K~Yi~~~~~R~IPVG---YsaaD~~-~---~r---~~~a 194 (314)
T PF03198_consen 127 IDAFAKYDNTLGFFAGNEVINDASN--TNAAPYVKAAVRDMKAYIKSKGYRSIPVG---YSAADDA-E---IR---QDLA 194 (314)
T ss_dssp HHHHTT-TTEEEEEEEESSS-STT---GGGHHHHHHHHHHHHHHHHHSSS----EE---EEE---T-T---TH---HHHH
T ss_pred HHHhccCCceEEEEecceeecCCCC--cccHHHHHHHHHHHHHHHHhcCCCCCcee---EEccCCh-h---HH---HHHH
Confidence 655443 57889999998864311 1124566666555443 222 22332 4332211 0 11 1223
Q ss_pred HHHH--hCCceeeEEeeeccCCC-C-C--HHHHHHHHHHHHhCCCCEEEEeeecCCCC--ChhHHHHHHHHHHHHHhcCC
Q 035723 361 RELK--RGGVLMDGIGLESHFTV-P-N--LPLMRAILDKLATLNLPIWLTEVDISGKL--DKETQAVYLEQVLREGFSHP 432 (528)
Q Consensus 361 ~~l~--~~G~~iDgIG~Q~H~~~-p-~--~~~i~~~L~~~a~~glpI~iTE~dv~~~~--~~~~QA~~~~~~~~~~~s~p 432 (528)
+.|. .....+|=.|+-.+-.- + + .......++.|+...+||.++|++..... .-.++...|..-|.-.||
T Consensus 195 ~Yl~Cg~~~~~iDf~g~N~Y~WCg~Stf~~SGy~~l~~~f~~y~vPvffSEyGCn~~~pR~f~ev~aly~~~Mt~v~S-- 272 (314)
T PF03198_consen 195 NYLNCGDDDERIDFFGLNSYEWCGDSTFETSGYDRLTKEFSNYSVPVFFSEYGCNTVTPRTFTEVPALYSPEMTDVWS-- 272 (314)
T ss_dssp HHTTBTT-----S-EEEEE----SS--HHHHSHHHHHHHHTT-SS-EEEEEE---SSSS---THHHHHTSHHHHTTEE--
T ss_pred HHhcCCCcccccceeeeccceecCCCccccccHHHHHHHhhCCCCCeEEcccCCCCCCCccchHhHHhhCccchhhee--
Confidence 3332 12247888888776533 2 2 23477888899999999999999998741 122334444444443333
Q ss_pred CeeEEEEEeeecCCCCCcccccCCC--C--CCchHHHHHHHHH
Q 035723 433 SVNGIMLWTALHPNGCYQMCLTDNN--L--QNLPAGNIVDKLL 471 (528)
Q Consensus 433 ~v~gi~~Wg~~d~~~~~~~gL~d~d--~--~pKPAy~~~~~li 471 (528)
|=+.+-+... ..+.||+.-+ . ++.+-|..|++-+
T Consensus 273 ---GGivYEy~~e--~n~yGlV~~~~~~~~~~~~Df~~L~~~~ 310 (314)
T PF03198_consen 273 ---GGIVYEYFQE--ANNYGLVEISGDGSVTTLDDFDNLKSQY 310 (314)
T ss_dssp ---EEEES-SB----SSS--SEEE-TTS-EEE-THHHHHHHHH
T ss_pred ---ceEEEEEecc--CCceEEEEEcCCCCeeecHhHHHHHHHH
Confidence 3334443322 1346666422 2 2455666665544
No 112
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=38.57 E-value=51 Score=34.53 Aligned_cols=69 Identities=9% Similarity=0.110 Sum_probs=44.3
Q ss_pred ccccCCCccCcchHHHHHHHHHhcCceEE------EeeeeeCCCCCCcccc------------------cCCChHHHHHH
Q 035723 224 ATEPEQGKINYTIADQMMEFVRSNQLIAR------GHNIFWEDPKYTPAWV------------------RNLTGPALQSA 279 (528)
Q Consensus 224 ~~Ep~~G~~~~~~~D~~v~~a~~~gi~vr------GH~L~W~~~~~~P~W~------------------~~~~~~~~~~~ 279 (528)
.-.+..|.|+-+...+++++|+++||.|. ||+..|-.. .|.-. ...+.++..+.
T Consensus 75 ~~~~~~~~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~~--~pel~~~~~~~~~~~~~~~~~~~L~~~~~~t~~f 152 (357)
T cd06563 75 DGTPYGGFYTQEEIREIVAYAAERGITVIPEIDMPGHALAALAA--YPELGCTGGPGSVVSVQGVVSNVLCPGKPETYTF 152 (357)
T ss_pred CCCccCceECHHHHHHHHHHHHHcCCEEEEecCCchhHHHHHHh--CccccCCCCCCccccccCcCCCccCCCChhHHHH
Confidence 33455677888888899999999999875 888655321 22111 11233456666
Q ss_pred HHHHHHHHHHHccCc
Q 035723 280 VNSRIQSLMNKYKEE 294 (528)
Q Consensus 280 ~~~~I~~v~~rY~g~ 294 (528)
+++-+++++.-|+++
T Consensus 153 ~~~ll~E~~~lF~~~ 167 (357)
T cd06563 153 LEDVLDEVAELFPSP 167 (357)
T ss_pred HHHHHHHHHHhCCCC
Confidence 777777777766643
No 113
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=38.49 E-value=1.7e+02 Score=22.25 Aligned_cols=42 Identities=21% Similarity=0.362 Sum_probs=31.0
Q ss_pred eeeecCCceEEEee-eeeeEEEEEEe-C-C---eeeEEEEEEecCCCe
Q 035723 480 TGHTDGHGSFSFYG-FLGEYTVSVKY-G-N---RTANSTFSLCQGDET 521 (528)
Q Consensus 480 ~~~t~~~G~~~~rg-f~G~y~v~v~~-~-~---~~~~~~~~l~~~~~~ 521 (528)
...||++|.+.|.+ -.|.|.|.-.. + | ......|.+..++..
T Consensus 20 ~~~Td~~G~~~f~~L~~G~Y~l~E~~aP~GY~~~~~~~~~~i~~~~~~ 67 (70)
T PF05738_consen 20 TVTTDENGKYTFKNLPPGTYTLKETKAPDGYQLDDTPYEFTITEDGDV 67 (70)
T ss_dssp EEEGGTTSEEEEEEEESEEEEEEEEETTTTEEEEECEEEEEECTTSCE
T ss_pred EEEECCCCEEEEeecCCeEEEEEEEECCCCCEECCCceEEEEecCCEE
Confidence 37899999999985 68999999876 4 3 234456677776663
No 114
>PRK12569 hypothetical protein; Provisional
Probab=37.96 E-value=2e+02 Score=28.50 Aligned_cols=92 Identities=16% Similarity=0.153 Sum_probs=61.3
Q ss_pred chHHHHHHHHHhcCceEEEeeeeeCCCCCCcccc------cCCChHHHHHHHHHHHHH---HHHHccCceeEEEeecccc
Q 035723 235 TIADQMMEFVRSNQLIARGHNIFWEDPKYTPAWV------RNLTGPALQSAVNSRIQS---LMNKYKEEFIHWDVSNEML 305 (528)
Q Consensus 235 ~~~D~~v~~a~~~gi~vrGH~L~W~~~~~~P~W~------~~~~~~~~~~~~~~~I~~---v~~rY~g~v~~WDVvNE~~ 305 (528)
..-++.|++|+++|+.+-.|+- .|+-. -.++++++++.+..-|.. ++...+.++.+-- |
T Consensus 47 ~~M~~tv~lA~~~~V~IGAHPs-------yPD~~gFGRr~m~~s~~el~~~v~yQigaL~~~~~~~g~~l~hVK----P- 114 (245)
T PRK12569 47 NIMRRTVELAKAHGVGIGAHPG-------FRDLVGFGRRHINASPQELVNDVLYQLGALREFARAHGVRLQHVK----P- 114 (245)
T ss_pred HHHHHHHHHHHHcCCEeccCCC-------CCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeeEEec----C-
Confidence 3567889999999999999984 45432 136788888777766644 4566666766543 2
Q ss_pred ccccccccc-ChHHHHHHHHHHHhhCCCcEEEee
Q 035723 306 HFDFYEQRL-GHDATLHFYETAHQSDPLATLFMN 338 (528)
Q Consensus 306 ~~~~~~~~~-G~d~~~~af~~Ar~~dP~a~L~~N 338 (528)
|+-.+-... .++......+.+++.+|+..|+.-
T Consensus 115 HGALYN~~~~d~~la~av~~ai~~~~~~l~l~~~ 148 (245)
T PRK12569 115 HGALYMHAARDEALARLLVEALARLDPLLILYCM 148 (245)
T ss_pred CHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEec
Confidence 332222211 245666777888999999888664
No 115
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Proteins belonging to this subgroup include CP-like protein X1 (CPX1), CP-like protein X2 (CPX2), and aortic CP-like protein (ACLP) and its isoform adipocyte enhancer binding protein-1 (AEBP1). AEBP1 is a truncated form of ACLP, which may arise from alternative splicing of the gene. These proteins are inactive towards standard CP substrates because they lack one or more critical active site and substrate-binding residues that are necessary for activity. They may function as binding proteins rather than as active CPs or display catalytic activity toward other substrates. Pro
Probab=37.85 E-value=58 Score=34.83 Aligned_cols=48 Identities=13% Similarity=0.104 Sum_probs=35.0
Q ss_pred eeeecCCceEEEeeeeeeEEEEEEeCC-eeeEEEEEEecCCCeeEEEEE
Q 035723 480 TGHTDGHGSFSFYGFLGEYTVSVKYGN-RTANSTFSLCQGDETRHVTIR 527 (528)
Q Consensus 480 ~~~t~~~G~~~~rgf~G~y~v~v~~~~-~~~~~~~~l~~~~~~~~~~i~ 527 (528)
..+|..+|-|-=-.--|.|.|+|+.+| ...++++.|..+..++++...
T Consensus 356 ~v~t~~~GdywRll~pG~y~v~~~a~gy~~~~~~~~v~~~~~~~~~~f~ 404 (405)
T cd03869 356 DIRTASDGDYWRLLNPGEYRVTAHAEGYTSSTKNCEVGYEMGPTQCNFT 404 (405)
T ss_pred ceeeCCCCceEEecCCceEEEEEEecCCCcccEEEEEcCCCCceeeccC
Confidence 456677777754445799999999999 578899999987555455443
No 116
>PRK09936 hypothetical protein; Provisional
Probab=37.62 E-value=4.6e+02 Score=26.75 Aligned_cols=157 Identities=17% Similarity=0.302 Sum_probs=88.0
Q ss_pred CChhHHHHH----HhhcCeeccCCcccCcccccCCCccCcchHH----HHHHHHHhcCceEEEeeeeeCCCCCCcccccC
Q 035723 199 GNLPYQKWF----VERFNAAVFENELKWYATEPEQGKINYTIAD----QMMEFVRSNQLIARGHNIFWEDPKYTPAWVRN 270 (528)
Q Consensus 199 ~~~~y~~~~----~~~Fn~vt~eN~~kW~~~Ep~~G~~~~~~~D----~~v~~a~~~gi~vrGH~L~W~~~~~~P~W~~~ 270 (528)
++..+++++ ..+|+.+.. -|..+ |.-+|...| +.++.|.+.||+++-.. . .-|+|...
T Consensus 36 ~~~qWq~~~~~~~~~G~~tLiv----QWt~y----G~~~fg~~~g~La~~l~~A~~~Gl~v~vGL--~----~Dp~y~q~ 101 (296)
T PRK09936 36 TDTQWQGLWSQLRLQGFDTLVV----QWTRY----GDADFGGQRGWLAKRLAAAQQAGLKLVVGL--Y----ADPEFFMH 101 (296)
T ss_pred CHHHHHHHHHHHHHcCCcEEEE----Eeeec----cCCCcccchHHHHHHHHHHHHcCCEEEEcc--c----CChHHHHH
Confidence 344455544 357888874 68766 222665443 57899999999996322 1 36888775
Q ss_pred C--ChHHHHHHHHHHHHHH-------HHHccCceeEEEeecccccccccccccChHHHHHHHHHHHhhCC--CcEEEeec
Q 035723 271 L--TGPALQSAVNSRIQSL-------MNKYKEEFIHWDVSNEMLHFDFYEQRLGHDATLHFYETAHQSDP--LATLFMNE 339 (528)
Q Consensus 271 ~--~~~~~~~~~~~~I~~v-------~~rY~g~v~~WDVvNE~~~~~~~~~~~G~d~~~~af~~Ar~~dP--~a~L~~Nd 339 (528)
+ +++.+...+.....+- .++.+-.|..|=+==|....+ |.+.--.+.+....+.+.+.-| +..|.|.-
T Consensus 102 ~~~d~~~~~~yl~~~l~~~~~qa~~~~~~~~~~v~GWYiP~ElDd~~-W~~~~rR~~L~~~L~~~~~~l~~~~kPv~ISa 180 (296)
T PRK09936 102 QKQDGAALESYLNRQLGASLQQARLWSAAWGVPVDGWYLPAELDDLN-WRDEARRQPLLTWLNAAQRLIDVSAKPVHISA 180 (296)
T ss_pred HhcCchhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEeeeccchhc-ccCHHHHHHHHHHHHHHHHhCCCCCCCeEEEe
Confidence 4 3344444444433332 233333456777766764322 5443223444455555555544 55677777
Q ss_pred CCcccCCCCcchhHHHHHHHHHHHHhCCce---eeEEeee
Q 035723 340 FNVVETCSDENSTVDRYISRLRELKRGGVL---MDGIGLE 376 (528)
Q Consensus 340 y~~~~~~~~~~~~~~~~~~~v~~l~~~G~~---iDgIG~Q 376 (528)
|..-+ ..+..+-..++.|...|+. =||+|.+
T Consensus 181 y~~g~------~sP~~l~~Wl~~l~~~~l~V~~QDGvGv~ 214 (296)
T PRK09936 181 FFAGN------MSPDGYRQWLEQLKATGVNVWVQDGSGVD 214 (296)
T ss_pred ecccC------CChHHHHHHHHHHhhcCCeEEEEcCCCcc
Confidence 75411 1245555667777777753 3777764
No 117
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=36.80 E-value=4.8e+02 Score=28.34 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHccCceeEEEeeccc
Q 035723 280 VNSRIQSLMNKYKEEFIHWDVSNEM 304 (528)
Q Consensus 280 ~~~~I~~v~~rY~g~v~~WDVvNE~ 304 (528)
+..+|+..+..--+.|...|-.|+.
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~ 122 (448)
T PRK12331 98 VESFVQKSVENGIDIIRIFDALNDV 122 (448)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCcH
Confidence 4556666666655667777777775
No 118
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=36.25 E-value=5.8e+02 Score=27.91 Aligned_cols=26 Identities=12% Similarity=0.121 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHccCceeEEEeeccc
Q 035723 279 AVNSRIQSLMNKYKEEFIHWDVSNEM 304 (528)
Q Consensus 279 ~~~~~I~~v~~rY~g~v~~WDVvNE~ 304 (528)
.++.||+..+..--+.|...|-+|+.
T Consensus 96 vv~~fv~~A~~~Gvd~irif~~lnd~ 121 (467)
T PRK14041 96 VVELFVKKVAEYGLDIIRIFDALNDI 121 (467)
T ss_pred hhHHHHHHHHHCCcCEEEEEEeCCHH
Confidence 34556666666555667777777764
No 119
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=35.84 E-value=43 Score=34.55 Aligned_cols=65 Identities=9% Similarity=0.278 Sum_probs=41.6
Q ss_pred ccCCCccCcchHHHHHHHHHhcCceEE------EeeeeeCCCCCCccccc------------CCChHHHHHHHHHHHHHH
Q 035723 226 EPEQGKINYTIADQMMEFVRSNQLIAR------GHNIFWEDPKYTPAWVR------------NLTGPALQSAVNSRIQSL 287 (528)
Q Consensus 226 Ep~~G~~~~~~~D~~v~~a~~~gi~vr------GH~L~W~~~~~~P~W~~------------~~~~~~~~~~~~~~I~~v 287 (528)
-+..|.|+-+....++++|+++||.|. ||+..|-.. .|.... ..+.++..+.+++-++++
T Consensus 73 ~~~~~~YT~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~~--~pel~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~E~ 150 (326)
T cd06564 73 TANDGYYTKEEFKELIAYAKDRGVNIIPEIDSPGHSLAFTKA--MPELGLKNPFSKYDKDTLDISNPEAVKFVKALFDEY 150 (326)
T ss_pred CCCCCcccHHHHHHHHHHHHHcCCeEeccCCCcHHHHHHHHh--hHHhcCCCcccCCCcccccCCCHHHHHHHHHHHHHH
Confidence 345677777788899999999999875 887766321 222111 123345566666666666
Q ss_pred HHHcc
Q 035723 288 MNKYK 292 (528)
Q Consensus 288 ~~rY~ 292 (528)
+.-++
T Consensus 151 ~~~f~ 155 (326)
T cd06564 151 LDGFN 155 (326)
T ss_pred HHhcC
Confidence 66665
No 120
>PF13115 YtkA: YtkA-like
Probab=35.84 E-value=39 Score=27.15 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=19.1
Q ss_pred eEEEEEeCCCCCccCCcceeeeee
Q 035723 160 AVTIHAADGSGDTLQGAEITIEQV 183 (528)
Q Consensus 160 ~~~v~v~d~~g~p~~~a~v~v~~~ 183 (528)
.++|+ ++.+|+||.+|.|.+.-.
T Consensus 23 ~i~v~-~~~~g~pv~~a~V~~~~~ 45 (86)
T PF13115_consen 23 TITVT-VDQGGKPVTDADVQFEIW 45 (86)
T ss_pred EEEEE-ECCCCCCCCCCEEEEEEE
Confidence 57777 889999999999888754
No 121
>PRK09875 putative hydrolase; Provisional
Probab=35.46 E-value=4.9e+02 Score=26.46 Aligned_cols=136 Identities=13% Similarity=0.161 Sum_probs=71.8
Q ss_pred hHHHHHHHHHhcCceEEEeeeeeCCCCCCcccccCCChHHHHHHHHHHHHHHHHHccCceeEEEeecccccccccccccC
Q 035723 236 IADQMMEFVRSNQLIARGHNIFWEDPKYTPAWVRNLTGPALQSAVNSRIQSLMNKYKEEFIHWDVSNEMLHFDFYEQRLG 315 (528)
Q Consensus 236 ~~D~~v~~a~~~gi~vrGH~L~W~~~~~~P~W~~~~~~~~~~~~~~~~I~~v~~rY~g~v~~WDVvNE~~~~~~~~~~~G 315 (528)
....+.+.+++-|+.+..-|=++.. ...|.|+...+.+++.+.|.+=|..=+..-.=|- -|+-|.-. .+ ..+
T Consensus 62 d~~~l~~is~~tgv~Iv~~TG~y~~-~~~p~~~~~~~~e~la~~~i~ei~~Gi~gt~ika---GvIGeiG~--~~-~~i- 133 (292)
T PRK09875 62 NAQFMLDVMRETGINVVACTGYYQD-AFFPEHVATRSVQELAQEMVDEIEQGIDGTELKA---GIIAEIGS--SE-GKI- 133 (292)
T ss_pred CHHHHHHHHHHhCCcEEEcCcCCCC-ccCCHHHhcCCHHHHHHHHHHHHHHhhccCCCcc---cEEEEEec--CC-CCC-
Confidence 4577889999999999877765544 4689999988887766555444444332110011 12333321 01 111
Q ss_pred hHHHHHHHHHHHhh--CCCcEEEeecCCcccCCCCcchhHHHHHHHHHHHHhCCceeeEEeeeccCCC-CCHHHHHHHH
Q 035723 316 HDATLHFYETAHQS--DPLATLFMNEFNVVETCSDENSTVDRYISRLRELKRGGVLMDGIGLESHFTV-PNLPLMRAIL 391 (528)
Q Consensus 316 ~d~~~~af~~Ar~~--dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~v~~l~~~G~~iDgIG~Q~H~~~-p~~~~i~~~L 391 (528)
.+.-+++|++|.++ .-.+.+.+-- .. + . .-.+.++-|.+.|++.+-|=+ +|... +++..+++.+
T Consensus 134 t~~E~kvl~Aaa~a~~~TG~pi~~Ht----~~-~-----~-~g~e~l~il~e~Gvd~~rvvi-~H~d~~~d~~~~~~l~ 200 (292)
T PRK09875 134 TPLEEKVFIAAALAHNQTGRPISTHT----SF-S-----T-MGLEQLALLQAHGVDLSRVTV-GHCDLKDNLDNILKMI 200 (292)
T ss_pred CHHHHHHHHHHHHHHHHHCCcEEEcC----CC-c-----c-chHHHHHHHHHcCcCcceEEE-eCCCCCCCHHHHHHHH
Confidence 12334445444333 2234444320 10 1 0 113346667788987776644 67754 4555555444
No 122
>TIGR03212 uraD_N-term-dom putative urate catabolism protein. This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family.
Probab=35.39 E-value=3.3e+02 Score=27.75 Aligned_cols=45 Identities=22% Similarity=0.471 Sum_probs=28.9
Q ss_pred HHHHHHhCCc---eeeEEeeeccCC-CCC-HHHHHHHHHHHHhCCCCEEEE
Q 035723 359 RLRELKRGGV---LMDGIGLESHFT-VPN-LPLMRAILDKLATLNLPIWLT 404 (528)
Q Consensus 359 ~v~~l~~~G~---~iDgIG~Q~H~~-~p~-~~~i~~~L~~~a~~glpI~iT 404 (528)
..+.|.+.|. .+=.|++|+++. .|. +..+++.|+.+++.+ .||++
T Consensus 233 ~fd~l~~eg~~~~~~~~i~lHp~i~G~p~R~~~L~~~l~~i~~~~-~VW~a 282 (297)
T TIGR03212 233 AFDVLYAEGEGAPKMMSIGLHCRLVGRPGRIAALQRFLDYVQSHD-KVWVA 282 (297)
T ss_pred HHHHHHHhCCCCCceEEEecCccccCCHHHHHHHHHHHHHHHhCC-CEEEE
Confidence 3445666664 477899988885 463 445666777666543 38886
No 123
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=35.08 E-value=6.5e+02 Score=27.96 Aligned_cols=122 Identities=16% Similarity=0.146 Sum_probs=70.3
Q ss_pred HHHHHHHHHhcCceEEEeeeeeCCCCCCcccc---cCCChHHHHHHHHHHHHHHHHHccCceeEEEeeccccccccccc-
Q 035723 237 ADQMMEFVRSNQLIARGHNIFWEDPKYTPAWV---RNLTGPALQSAVNSRIQSLMNKYKEEFIHWDVSNEMLHFDFYEQ- 312 (528)
Q Consensus 237 ~D~~v~~a~~~gi~vrGH~L~W~~~~~~P~W~---~~~~~~~~~~~~~~~I~~v~~rY~g~v~~WDVvNE~~~~~~~~~- 312 (528)
.|+.++.+.+.|.+.. |.++=- .+-.+ .+.+.++..+.+.+-|+...++ +.+|. +. =|. ++..
T Consensus 83 ~d~~~ea~~~~~~~~v-~i~~~~----Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~-g~~V~-~~--~e~----f~D~~ 149 (526)
T TIGR00977 83 EDKMLQALIKAETPVV-TIFGKS----WDLHVLEALQTTLEENLAMIYDTVAYLKRQ-GDEVI-YD--AEH----FFDGY 149 (526)
T ss_pred hHHHHHHHhcCCCCEE-EEEeCC----CHHHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCeEE-EE--eee----eeecc
Confidence 4677888888888754 443211 12122 2346677676666666655544 33332 11 121 1111
Q ss_pred ccChHHHHHHHHHHHhhCCCcEEEeecCCcccCCCCcchhHHHHHHHHHHHHhCCceeeEEeeeccCC
Q 035723 313 RLGHDATLHFYETAHQSDPLATLFMNEFNVVETCSDENSTVDRYISRLRELKRGGVLMDGIGLESHFT 380 (528)
Q Consensus 313 ~~G~d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~v~~l~~~G~~iDgIG~Q~H~~ 380 (528)
...++|+...++.|.++.++. +.+-|-.-. ..+..+.++++.+.++ ++.--||+|+|-.
T Consensus 150 r~~~~~l~~~~~~a~~aGad~-i~i~DTvG~-------~~P~~v~~li~~l~~~-~~~~~i~vH~HND 208 (526)
T TIGR00977 150 KANPEYALATLATAQQAGADW-LVLCDTNGG-------TLPHEISEITTKVKRS-LKQPQLGIHAHND 208 (526)
T ss_pred cCCHHHHHHHHHHHHhCCCCe-EEEecCCCC-------cCHHHHHHHHHHHHHh-CCCCEEEEEECCC
Confidence 245799999999998877665 444442221 2356777788888764 3433589999954
No 124
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=34.45 E-value=3.5e+02 Score=26.08 Aligned_cols=100 Identities=14% Similarity=0.017 Sum_probs=62.0
Q ss_pred ChHHHHHHHHHHHhhCCCcEEEeecCCcccCCCCcchhHHHHHHHHHHHHhCCceeeEEeeeccCC----CCCHHHHHHH
Q 035723 315 GHDATLHFYETAHQSDPLATLFMNEFNVVETCSDENSTVDRYISRLRELKRGGVLMDGIGLESHFT----VPNLPLMRAI 390 (528)
Q Consensus 315 G~d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~v~~l~~~G~~iDgIG~Q~H~~----~p~~~~i~~~ 390 (528)
-.+|+...++.+|+..=...|-.|+|... ..+.+++ .+. ..+.+|--++-.... .-+.+.+.+.
T Consensus 52 q~~fl~~l~~~~k~~gi~~~leTnG~~~~----------~~~~~l~-~~~-D~~l~DiK~~d~~~~~~~tG~~~~~il~n 119 (213)
T PRK10076 52 QAEFATRFLQRLRLWGVSCAIETAGDAPA----------SKLLPLA-KLC-DEVLFDLKIMDATQARDVVKMNLPRVLEN 119 (213)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCH----------HHHHHHH-Hhc-CEEEEeeccCCHHHHHHHHCCCHHHHHHH
Confidence 36899999999999877777777887541 2222222 111 235667665532221 1256678899
Q ss_pred HHHHHhCCCCEEEEeeecCCCCChhHHHHHHHHHHH
Q 035723 391 LDKLATLNLPIWLTEVDISGKLDKETQAVYLEQVLR 426 (528)
Q Consensus 391 L~~~a~~glpI~iTE~dv~~~~~~~~QA~~~~~~~~ 426 (528)
|+.+++.|.+++|+=.=|+.-.+.+...+-+.+++.
T Consensus 120 l~~l~~~g~~v~iR~~vIPg~nd~~e~i~~ia~~l~ 155 (213)
T PRK10076 120 LRLLVSEGVNVIPRLPLIPGFTLSRENMQQALDVLI 155 (213)
T ss_pred HHHHHhCCCcEEEEEEEECCCCCCHHHHHHHHHHHH
Confidence 999999999999987777753233333333344443
No 125
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=33.57 E-value=5.3e+02 Score=26.22 Aligned_cols=208 Identities=16% Similarity=0.285 Sum_probs=107.5
Q ss_pred CChhHHHHHHhhcCeeccCCcccCcccccCCCccCcchHHHHHHHHHhcCceEEE---------eeeeeCCC--CCCccc
Q 035723 199 GNLPYQKWFVERFNAAVFENELKWYATEPEQGKINYTIADQMMEFVRSNQLIARG---------HNIFWEDP--KYTPAW 267 (528)
Q Consensus 199 ~~~~y~~~~~~~Fn~vt~eN~~kW~~~Ep~~G~~~~~~~D~~v~~a~~~gi~vrG---------H~L~W~~~--~~~P~W 267 (528)
.+..+.++..++|..++++ -.+ .|.++-...-+=+.-.+++|..+.. |-..|... ...|+|
T Consensus 32 ~d~~~~~i~~~~f~llVVD--ps~------~g~~~~~~~~eelr~~~~gg~~pIAYlsIg~ae~yR~Ywd~~w~~~~p~w 103 (300)
T COG2342 32 QDAYINEILNSPFDLLVVD--PSY------CGPFNTPWTIEELRTKADGGVKPIAYLSIGEAESYRFYWDKYWLTGRPDW 103 (300)
T ss_pred ccchHHHHhcCCCcEEEEe--ccc------cCCCCCcCcHHHHHHHhcCCeeEEEEEechhhhhhhhHhhhhhhcCCccc
Confidence 3566778888999999886 212 2222212222236677788833321 11123211 137888
Q ss_pred ccCCCh------------HHHHHHHHHHHHHHHHH-ccCceeEEEeeccccccccccc-ccCh-------HHHHHHHHHH
Q 035723 268 VRNLTG------------PALQSAVNSRIQSLMNK-YKEEFIHWDVSNEMLHFDFYEQ-RLGH-------DATLHFYETA 326 (528)
Q Consensus 268 ~~~~~~------------~~~~~~~~~~I~~v~~r-Y~g~v~~WDVvNE~~~~~~~~~-~~G~-------d~~~~af~~A 326 (528)
+-.-+| ++-++.+..+.+++... |.|- .-|+|-.- .--.|.+ ..|. .++.+.-..+
T Consensus 104 Lg~edP~W~Gny~VkYW~~eWkdii~~~l~rL~d~GfdGv--yLD~VD~y-~Y~~~~~~~~~~~~~k~m~~~i~~i~~~~ 180 (300)
T COG2342 104 LGEEDPEWPGNYAVKYWEPEWKDIIRSYLDRLIDQGFDGV--YLDVVDAY-WYVEWNDRETGVNAAKKMVKFIAAIAEYA 180 (300)
T ss_pred ccCCCCCCCCCceeeccCHHHHHHHHHHHHHHHHccCceE--EEeeechH-HHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 865332 35666677777777653 5441 23443321 0000111 1121 3556666788
Q ss_pred HhhCCCcEEEeec-CCcccCCCCcchhHHHHHHHHHHHHh---CCceeeEEeeeccCC---CC--CHHHHHHHHHHHHhC
Q 035723 327 HQSDPLATLFMNE-FNVVETCSDENSTVDRYISRLRELKR---GGVLMDGIGLESHFT---VP--NLPLMRAILDKLATL 397 (528)
Q Consensus 327 r~~dP~a~L~~Nd-y~~~~~~~~~~~~~~~~~~~v~~l~~---~G~~iDgIG~Q~H~~---~p--~~~~i~~~L~~~a~~ 397 (528)
|++.|.-.++.|. =.+++..+ ..|+. .|+-++ .-+. .| +.+..++.|+++.++
T Consensus 181 ra~~~~~~Vi~qng~~l~d~~~-------------a~l~~~~~~~~~vE-----~~~~d~~~~~~~~~~~e~~Lr~l~~~ 242 (300)
T COG2342 181 RAANPLFRVIPQNGAELFDADG-------------AGLLPRLGFGVAVE-----TVFYDDERPLESADTFEEYLRKLCRL 242 (300)
T ss_pred HhcCCcEEEEecccHhhcCccc-------------cchhhccccceEEE-----EEEecCccCCCchhhHHHHHHHHHhc
Confidence 8999996666653 22222211 01111 122222 1221 12 334566899999999
Q ss_pred CCCEEEEeeecCCCCChhHHHHHHHHHHHHHhcCCCeeEEEEEee
Q 035723 398 NLPIWLTEVDISGKLDKETQAVYLEQVLREGFSHPSVNGIMLWTA 442 (528)
Q Consensus 398 glpI~iTE~dv~~~~~~~~QA~~~~~~~~~~~s~p~v~gi~~Wg~ 442 (528)
|+||.+-|.+...+ ++.. .-+++++..+ .+.|+...-.
T Consensus 243 G~~V~vieY~~d~~-~~~~--~r~~~~~~kt----r~~g~~p~~~ 280 (300)
T COG2342 243 GKPVYVIEYALDPT-DPRE--SRLEDLFEKT----RAEGVYPYVA 280 (300)
T ss_pred CCcEEEEEecCCCC-chhh--HHHHHHHHHh----hccceEEeee
Confidence 99999999998864 2222 4445555443 3555555544
No 126
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=33.21 E-value=6.4e+02 Score=28.46 Aligned_cols=55 Identities=13% Similarity=0.144 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHhhCCCcEEEeecCCcccCCCCcchhHHHHHHHHHHHHhC-CceeeEEeeeccCCC
Q 035723 316 HDATLHFYETAHQSDPLATLFMNEFNVVETCSDENSTVDRYISRLRELKRG-GVLMDGIGLESHFTV 381 (528)
Q Consensus 316 ~d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~v~~l~~~-G~~iDgIG~Q~H~~~ 381 (528)
.+|+....+.+.++.. -.|.+-|-+-. ..+....++++.|+++ ++| ||+|+|-..
T Consensus 153 ~~~~~~~a~~l~~~Ga-d~I~i~Dt~G~-------~~P~~~~~lv~~lk~~~~~p---i~~H~Hnt~ 208 (592)
T PRK09282 153 IEKYVELAKELEEMGC-DSICIKDMAGL-------LTPYAAYELVKALKEEVDLP---VQLHSHCTS 208 (592)
T ss_pred HHHHHHHHHHHHHcCC-CEEEECCcCCC-------cCHHHHHHHHHHHHHhCCCe---EEEEEcCCC
Confidence 4666666666665543 35667664432 1355666777777664 333 678888654
No 127
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=33.10 E-value=6.1e+02 Score=28.00 Aligned_cols=92 Identities=11% Similarity=0.145 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHccCceeEEEeecccccc-----------cc------c--ccccChHHHHHHHHHHHhhCCCcEEEeec
Q 035723 279 AVNSRIQSLMNKYKEEFIHWDVSNEMLHF-----------DF------Y--EQRLGHDATLHFYETAHQSDPLATLFMNE 339 (528)
Q Consensus 279 ~~~~~I~~v~~rY~g~v~~WDVvNE~~~~-----------~~------~--~~~~G~d~~~~af~~Ar~~dP~a~L~~Nd 339 (528)
.++.+|+..+..--+.|+-.|-+|+..+- .. + ......+|+....+.+.++.. -.|.+-|
T Consensus 98 vv~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Ga-d~I~IkD 176 (499)
T PRK12330 98 VVDRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGA-DSICIKD 176 (499)
T ss_pred HHHHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCC-CEEEeCC
Confidence 46667777777766778888888876321 00 0 111234666666666665543 3566666
Q ss_pred CCcccCCCCcchhHHHHHHHHHHHHhC---CceeeEEeeeccCCC
Q 035723 340 FNVVETCSDENSTVDRYISRLRELKRG---GVLMDGIGLESHFTV 381 (528)
Q Consensus 340 y~~~~~~~~~~~~~~~~~~~v~~l~~~---G~~iDgIG~Q~H~~~ 381 (528)
-.-+ ..+....++++.|+++ ++| |++|+|-..
T Consensus 177 taGl-------l~P~~~~~LV~~Lk~~~~~~ip---I~~H~Hnt~ 211 (499)
T PRK12330 177 MAAL-------LKPQPAYDIVKGIKEACGEDTR---INLHCHSTT 211 (499)
T ss_pred CccC-------CCHHHHHHHHHHHHHhCCCCCe---EEEEeCCCC
Confidence 3322 1356666777777764 234 567777544
No 128
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=32.76 E-value=2.4e+02 Score=27.19 Aligned_cols=109 Identities=17% Similarity=0.195 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHccC-ceeEEEeecccccccccccccChHHHHHHHHHHHhhCCCcEEEeecCCcccCCCCcchhHHH
Q 035723 277 QSAVNSRIQSLMNKYKE-EFIHWDVSNEMLHFDFYEQRLGHDATLHFYETAHQSDPLATLFMNEFNVVETCSDENSTVDR 355 (528)
Q Consensus 277 ~~~~~~~I~~v~~rY~g-~v~~WDVvNE~~~~~~~~~~~G~d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~ 355 (528)
+...+.||++.-...++ .|..||+.+|++- .+..+.+..+|+..-... .. + .......
T Consensus 19 ~~l~~~Fi~~yk~~~P~dev~~~DL~~e~iP------~ld~~~~~a~~~~~~~~~----------t~-~----~~~~~~~ 77 (202)
T COG1182 19 RKLADEFIETYKEKHPNDEVIERDLAAEPIP------HLDEELLAAWFKPQAGEG----------TA-E----EKEALAR 77 (202)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEeecccCCCc------ccCHHHHhcccCCccCCC----------CH-H----HHHHHHH
Confidence 45566777776666654 8999999999972 233344433332211110 00 0 0012233
Q ss_pred HHHHHHHHHhCCceeeEEeeeccCCC-CCHHHHHHHHHHHHhCCCCEEEEeeecCC
Q 035723 356 YISRLRELKRGGVLMDGIGLESHFTV-PNLPLMRAILDKLATLNLPIWLTEVDISG 410 (528)
Q Consensus 356 ~~~~v~~l~~~G~~iDgIG~Q~H~~~-p~~~~i~~~L~~~a~~glpI~iTE~dv~~ 410 (528)
.-+++++|+++... .|+. -+.+ .-++.++.-+|..+..|+-...||=+...
T Consensus 78 sd~l~~ef~aAD~v--Vi~~--PM~Nf~iPa~LK~yiD~i~~aGkTFkYte~Gp~G 129 (202)
T COG1182 78 SDKLLEEFLAADKV--VIAA--PMYNFNIPAQLKAYIDHIAVAGKTFKYTENGPVG 129 (202)
T ss_pred HHHHHHHHHhcCeE--EEEe--cccccCCCHHHHHHHHHHhcCCceEEeccCCccc
Confidence 33456777776432 2333 2222 23468999999999999999999977653
No 129
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=32.53 E-value=6.4e+02 Score=26.88 Aligned_cols=122 Identities=17% Similarity=0.326 Sum_probs=73.2
Q ss_pred HhhcCeeccCCcccC-----------cccccCCCccCcchHHHHHHHHHhcCceEEEeeeeeCCC----------CCCcc
Q 035723 208 VERFNAAVFENELKW-----------YATEPEQGKINYTIADQMMEFVRSNQLIARGHNIFWEDP----------KYTPA 266 (528)
Q Consensus 208 ~~~Fn~vt~eN~~kW-----------~~~Ep~~G~~~~~~~D~~v~~a~~~gi~vrGH~L~W~~~----------~~~P~ 266 (528)
...++.+++. --| +.+++.+.+|- .-...+++.+.+.||++- +|-.+ +..|+
T Consensus 69 ~~G~e~fviD--DGW~~~r~~d~~~~GdW~~~~~kFP-~Gl~~l~~~i~~~Gmk~G----lW~ePe~v~~~S~l~~~hPd 141 (394)
T PF02065_consen 69 ELGYEYFVID--DGWFGGRDDDNAGLGDWEPDPKKFP-NGLKPLADYIHSLGMKFG----LWFEPEMVSPDSDLYREHPD 141 (394)
T ss_dssp HHT-SEEEE---SSSBCTESTTTSTTSBECBBTTTST-THHHHHHHHHHHTT-EEE----EEEETTEEESSSCHCCSSBG
T ss_pred HhCCEEEEEc--CccccccCCCcccCCceeEChhhhC-CcHHHHHHHHHHCCCeEE----EEeccccccchhHHHHhCcc
Confidence 3468888876 344 34555554442 236789999999999985 23211 13688
Q ss_pred cccC----------------CChHHHHHHHHHHHHHHHHHccCceeEEEeecccccccccccccCh---HHH---HHHHH
Q 035723 267 WVRN----------------LTGPALQSAVNSRIQSLMNKYKEEFIHWDVSNEMLHFDFYEQRLGH---DAT---LHFYE 324 (528)
Q Consensus 267 W~~~----------------~~~~~~~~~~~~~I~~v~~rY~g~v~~WDVvNE~~~~~~~~~~~G~---d~~---~~af~ 324 (528)
|+.. ++.++.++.+.+.|.+++..|+=.-.-||- |..+... ....+++ .|+ ...++
T Consensus 142 w~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D~-n~~~~~~-~~~~~~~~~~~~~~~~y~l~~ 219 (394)
T PF02065_consen 142 WVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWDF-NRDITEA-GSPSLPEGYHRYVLGLYRLLD 219 (394)
T ss_dssp GBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE--TS-TTS--SSTTS-GHHHHHHHHHHHHHH
T ss_pred ceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEecc-ccCCCCC-CCCCchHHHHHHHHHHHHHHH
Confidence 9742 355778888888898988888755567995 5543321 1122222 233 35678
Q ss_pred HHHhhCCCcEEEee
Q 035723 325 TAHQSDPLATLFMN 338 (528)
Q Consensus 325 ~Ar~~dP~a~L~~N 338 (528)
..|+..|++.+=..
T Consensus 220 ~L~~~~P~v~iE~C 233 (394)
T PF02065_consen 220 RLRARFPDVLIENC 233 (394)
T ss_dssp HHHHHTTTSEEEE-
T ss_pred HHHHhCCCcEEEec
Confidence 88999999877554
No 130
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=32.48 E-value=3.9e+02 Score=26.72 Aligned_cols=46 Identities=20% Similarity=0.288 Sum_probs=21.1
Q ss_pred HHHHHHHHHhCCceeeEEeee-ccCCCCCHHHHHHHHHHHHh-CCCCEEE
Q 035723 356 YISRLRELKRGGVLMDGIGLE-SHFTVPNLPLMRAILDKLAT-LNLPIWL 403 (528)
Q Consensus 356 ~~~~v~~l~~~G~~iDgIG~Q-~H~~~p~~~~i~~~L~~~a~-~glpI~i 403 (528)
-+++++...+.| +||+=+. +|+..++.+++.+.++.+++ .++||.|
T Consensus 85 ~i~~a~~a~~~G--ad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~pi~i 132 (289)
T PF00701_consen 85 AIELARHAQDAG--ADAVLVIPPYYFKPSQEELIDYFRAIADATDLPIII 132 (289)
T ss_dssp HHHHHHHHHHTT---SEEEEEESTSSSCCHHHHHHHHHHHHHHSSSEEEE
T ss_pred HHHHHHHHhhcC--ceEEEEeccccccchhhHHHHHHHHHHhhcCCCEEE
Confidence 344455555554 3554433 33333454455555554432 3556555
No 131
>PF07364 DUF1485: Protein of unknown function (DUF1485); InterPro: IPR015995 Proteins in this entry are involved in degradation of the cyanobacterial heptapeptide hepatotoxin microcystin LR, and are encoded in the mlr gene cluster []. MlrC from Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) is believed to mediate the last step of peptidolytic degradation of the tetrapeptide. It is suspected to be a metallopeptidase based on homology to known peptidases and its inhibition by metal chelators. The proteins encoded by the mlr cluster may be involved in cell wall peptidoglycan cycling and subsequently act fortuitously in hydrolysis of microcystin LR. This entry represents the N-terminal region of these proteins.; PDB: 3IUU_A.
Probab=32.44 E-value=1.4e+02 Score=30.44 Aligned_cols=57 Identities=19% Similarity=0.274 Sum_probs=33.5
Q ss_pred HHHHHHHH----HHHHhCCceeeEEeeeccCCC-----CCHH-HHHHHHHHHHhCCCCEEEEeeecCCC
Q 035723 353 VDRYISRL----RELKRGGVLMDGIGLESHFTV-----PNLP-LMRAILDKLATLNLPIWLTEVDISGK 411 (528)
Q Consensus 353 ~~~~~~~v----~~l~~~G~~iDgIG~Q~H~~~-----p~~~-~i~~~L~~~a~~glpI~iTE~dv~~~ 411 (528)
.+.|..+. +.|.+.| |+|||=+-.|-.. ++.+ ++.+.++..-..++||-+| +|...+
T Consensus 77 ~~aye~l~~eil~~l~~ag-p~Dgv~L~LHGAmv~e~~~D~EG~Ll~rvR~~vGp~vpI~~t-lDlHaN 143 (292)
T PF07364_consen 77 REAYERLRDEILDRLRAAG-PLDGVLLDLHGAMVAEGYDDGEGDLLRRVRAIVGPDVPIAAT-LDLHAN 143 (292)
T ss_dssp HHHHHHHHHHHHHHHHHS----SEEEEEE-S---BSS-SSHHHHHHHHHHHHHTTTSEEEEE-E-TT--
T ss_pred HHHHHHHHHHHHHHHHhcC-CcCEEEEeccCcEeecCCCCchHHHHHHHHHHhCCCCeEEEE-eCCCCC
Confidence 44554443 4444454 9999999999643 4554 4777777777788999887 898875
No 132
>COG2160 AraA L-arabinose isomerase [Carbohydrate transport and metabolism]
Probab=32.40 E-value=1.3e+02 Score=32.06 Aligned_cols=66 Identities=17% Similarity=0.229 Sum_probs=46.2
Q ss_pred eEEeeeccCCCCCHHHHHHH----HHHHH-hCCCCEEEEeeecCCCCChhHHHHHHHHHHHHHhcCCCeeEEEEEee
Q 035723 371 DGIGLESHFTVPNLPLMRAI----LDKLA-TLNLPIWLTEVDISGKLDKETQAVYLEQVLREGFSHPSVNGIMLWTA 442 (528)
Q Consensus 371 DgIG~Q~H~~~p~~~~i~~~----L~~~a-~~glpI~iTE~dv~~~~~~~~QA~~~~~~~~~~~s~p~v~gi~~Wg~ 442 (528)
=+||.|-..+.+..+++++. .+.++ ...+|+.|.=..+-++ ++-..++++.+-..+.|.|++.|--
T Consensus 11 FviGsq~lyg~e~le~v~~~a~~iV~~ln~~~~~P~kiv~k~l~tS------~d~i~~~~~~an~~d~cag~ItwmH 81 (497)
T COG2160 11 FVIGSQHLYGEETLEQVEQHAEGIVDQLNEEAKLPYKIVLKPLITS------PDEITAICREANYDDRCAGVITWLH 81 (497)
T ss_pred EEecchhhcCHHHHHHHHHHHHHHHHHhhhhcCCCeEEEeccccCC------HHHHHHHHHHhccCccceeEEEEEE
Confidence 36888866666655555444 44444 4578999988887764 4556677777777788999999973
No 133
>PRK02654 putative inner membrane protein translocase component YidC; Provisional
Probab=32.23 E-value=73 Score=33.14 Aligned_cols=43 Identities=16% Similarity=0.105 Sum_probs=32.9
Q ss_pred CCCCCCceEEEEEeCCCEEEEEEEEEEccC----CCcEEEEEEEEeCCe
Q 035723 42 TGFYTPAFILHNLTPGTIYCFSIWLKIEGA----NSAHVRASLKTENSV 86 (528)
Q Consensus 42 t~~w~G~~~~~~l~~G~~Y~vSawVk~~~g----~~~~~~vt~~~~~g~ 86 (528)
.+....+.+++.+..|..|.+.|-+ .+| ..+.+.+.+|+.+|+
T Consensus 143 ~~~~~~~~~~i~~~~~~h~~~~a~~--p~g~k~~vg~~~~~~~q~~~g~ 189 (375)
T PRK02654 143 PQPFKSKPQNIFITDGVHFPVIASL--PGGTKLGVGESVKIQLQTTEGK 189 (375)
T ss_pred CCCcCCCCceEEEecCccceEEEEc--CCCCcccccceeEEEEecCCCC
Confidence 4677788899999999999998864 444 235677788988775
No 134
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=31.85 E-value=2e+02 Score=35.62 Aligned_cols=87 Identities=17% Similarity=0.248 Sum_probs=55.0
Q ss_pred HHHHHHHHHhc-CceEEEeeeeeCCCCCCcccc-c-CCChHHHHHHHHHHHHHHHHHccC-ceeEEEeeccccccccccc
Q 035723 237 ADQMMEFVRSN-QLIARGHNIFWEDPKYTPAWV-R-NLTGPALQSAVNSRIQSLMNKYKE-EFIHWDVSNEMLHFDFYEQ 312 (528)
Q Consensus 237 ~D~~v~~a~~~-gi~vrGH~L~W~~~~~~P~W~-~-~~~~~~~~~~~~~~I~~v~~rY~g-~v~~WDVvNE~~~~~~~~~ 312 (528)
+|.+.|||... ..-+|=-+++|+.- +-=-. . .-+.+.|.+.|.+|++.+++-|.| ||+ |- |
T Consensus 451 ~dpl~DfA~~~S~aYLRREvIvWGDc--VKLRYG~~peDsP~LW~~M~~Y~~~~AkiF~G~RiD-----NC--H------ 515 (1464)
T TIGR01531 451 SDPLRDFASPGSRVYLRRELICWGDS--VKLRYGNKPEDSPYLWQHMKEYTEMTARIFDGVRID-----NC--H------ 515 (1464)
T ss_pred CchhhhhcCCCCceeEEEEEeeccce--eeeccCCCCcCCHHHHHHHHHHHHHHHHhhcceeee-----cc--c------
Confidence 56777877433 34456667778742 11000 0 012356999999999999999988 553 32 2
Q ss_pred ccChHHHHHHHHHHHhhCCC----cEEEee
Q 035723 313 RLGHDATLHFYETAHQSDPL----ATLFMN 338 (528)
Q Consensus 313 ~~G~d~~~~af~~Ar~~dP~----a~L~~N 338 (528)
...-...+...+.||++.|+ |.||.+
T Consensus 516 STPlhVaeylLd~AR~vnPnLyV~AELFTG 545 (1464)
T TIGR01531 516 STPIHVAEYLLDAARKYNPNLYVVAELFTG 545 (1464)
T ss_pred CCcHHHHHHHHHHHhhcCCCeEEEeeecCC
Confidence 12234567778899999999 555554
No 135
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=31.71 E-value=1.3e+02 Score=26.26 Aligned_cols=49 Identities=27% Similarity=0.440 Sum_probs=36.9
Q ss_pred eeeecCCceEEE-eeeeeeEEEEEEeCCeeeEEEEEEecCCC-eeEEEEEC
Q 035723 480 TGHTDGHGSFSF-YGFLGEYTVSVKYGNRTANSTFSLCQGDE-TRHVTIRV 528 (528)
Q Consensus 480 ~~~t~~~G~~~~-rgf~G~y~v~v~~~~~~~~~~~~l~~~~~-~~~~~i~~ 528 (528)
-|.||..|.+.- .|-+|+|-|-...++...++.+++-.+.. +..+.|.+
T Consensus 81 IGKTD~~Gki~Wk~~~kG~Y~v~l~n~e~~~~~~is~v~dr~~~~vi~i~~ 131 (131)
T PF10794_consen 81 IGKTDEEGKIIWKNGRKGKYIVFLPNGETQETRNISLVEDRKEHTVINITV 131 (131)
T ss_pred ecccCCCCcEEEecCCcceEEEEEcCCCceeEEeeeeeecCCcceEeeecC
Confidence 488999998754 57899999999888777777787766654 65666653
No 136
>PRK12999 pyruvate carboxylase; Reviewed
Probab=31.53 E-value=4.2e+02 Score=32.49 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHccCceeEEEeeccc
Q 035723 280 VNSRIQSLMNKYKEEFIHWDVSNEM 304 (528)
Q Consensus 280 ~~~~I~~v~~rY~g~v~~WDVvNE~ 304 (528)
+++||+..+..--+.|+-+|-.|+.
T Consensus 629 ~~~~i~~a~~~Gid~~rifd~lnd~ 653 (1146)
T PRK12999 629 VRAFVREAAAAGIDVFRIFDSLNWV 653 (1146)
T ss_pred HHHHHHHHHHcCCCEEEEeccCChH
Confidence 3456666666666677777877774
No 137
>COG4724 Endo-beta-N-acetylglucosaminidase D [Carbohydrate transport and metabolism]
Probab=31.37 E-value=1.4e+02 Score=31.51 Aligned_cols=86 Identities=17% Similarity=0.100 Sum_probs=46.3
Q ss_pred CCceEEEEecCCCCCCCceEE-----EEEeCCCEEEEEEEEEEccCCCcEEEEEEEEeCCeeEEeeeEEEeCCCEEEEEe
Q 035723 31 PENFSSIAHFSTGFYTPAFIL-----HNLTPGTIYCFSIWLKIEGANSAHVRASLKTENSVYNCVGSAAAKQGCWSFLKG 105 (528)
Q Consensus 31 g~~~sl~vt~Rt~~w~G~~~~-----~~l~~G~~Y~vSawVk~~~g~~~~~~vt~~~~~g~y~~~~~~~v~~~~Wt~l~g 105 (528)
||+ ||+.++--+.-..--+. +.+..+...+|+.- ++..-.|.+.|.+..++++-+.....-+..|+.=+
T Consensus 440 GGn-SLKfsgdl~~~~~~nv~Ly~t~L~i~~~tk~~v~~k----~~~glKV~~~f~~~pd~f~~~d~~K~l~~nW~~e~- 513 (553)
T COG4724 440 GGN-SLKFSGDLAGKTDQNVRLYSTKLEITEKTKLRVAHK----GGKGLKVYMAFSTTPDKFDDADAWKELSDNWTNEE- 513 (553)
T ss_pred CCc-ceeeeeccccCCccceEEEeeceeeecCceEEEEee----cCCceEEEEEEecCCccccchhhhhhhcccchhhh-
Confidence 455 78887764433322222 24667777666543 34444666677766667665433222255665433
Q ss_pred EEEecCC-C---CeeEEEEEcC
Q 035723 106 GFVLDSP-S---NLSILFFQNS 123 (528)
Q Consensus 106 ~~t~~~~-~---~~~~ly~E~~ 123 (528)
|.+..- + -.+.||||..
T Consensus 514 -~~l~~~~g~~i~av~l~~e~~ 534 (553)
T COG4724 514 -FDLSSLAGKTIYAVKLFFEHE 534 (553)
T ss_pred -eehhhccCceEEEEEEEEecc
Confidence 333321 2 2567999986
No 138
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=31.30 E-value=44 Score=30.81 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCCccCCcceeeeee
Q 035723 160 AVTIHAADGSGDTLQGAEITIEQV 183 (528)
Q Consensus 160 ~~~v~v~d~~g~p~~~a~v~v~~~ 183 (528)
.++.+|+|.+|+||++|.|.|=|.
T Consensus 17 ~l~g~V~D~~g~Pv~~A~veiWqa 40 (158)
T cd03459 17 ILEGRVLDGDGRPVPDALVEIWQA 40 (158)
T ss_pred EEEEEEECCCCCCCCCCEEEEEcc
Confidence 467789999999999999998774
No 139
>PRK05926 hypothetical protein; Provisional
Probab=31.07 E-value=2.9e+02 Score=29.19 Aligned_cols=126 Identities=13% Similarity=0.093 Sum_probs=77.1
Q ss_pred cChHHHHHHHHHHHhhCCCcEEE-ee--cCCcccCCCCcchhHHHHHHHHHHHHhCCc-eeeEEeeeccCC------CC-
Q 035723 314 LGHDATLHFYETAHQSDPLATLF-MN--EFNVVETCSDENSTVDRYISRLRELKRGGV-LMDGIGLESHFT------VP- 382 (528)
Q Consensus 314 ~G~d~~~~af~~Ar~~dP~a~L~-~N--dy~~~~~~~~~~~~~~~~~~~v~~l~~~G~-~iDgIG~Q~H~~------~p- 382 (528)
+..+++.+.++.+|+..|+..+- +. ++..+..... ....+.++.|+++|+ .+-+-|...... .|
T Consensus 128 ~~~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~-----~~~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~ 202 (370)
T PRK05926 128 CNLAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDN-----LPVKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAPG 202 (370)
T ss_pred CCHHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcC-----CCHHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCCC
Confidence 34588999999999999988753 22 1111000000 012345688899996 445444532221 13
Q ss_pred --CHHHHHHHHHHHHhCCCCEEEEeeecCCCCChhHHHHHHHHHHHHHhcCCCeeEEEEEeeecC
Q 035723 383 --NLPLMRAILDKLATLNLPIWLTEVDISGKLDKETQAVYLEQVLREGFSHPSVNGIMLWTALHP 445 (528)
Q Consensus 383 --~~~~i~~~L~~~a~~glpI~iTE~dv~~~~~~~~QA~~~~~~~~~~~s~p~v~gi~~Wg~~d~ 445 (528)
+.++..+.++...++|+++-.| +=+...++.+..++.+..+=.+--...++..|+-|.|...
T Consensus 203 ~~t~~e~l~~i~~a~~~Gi~~~sg-mi~G~gEt~edrv~~l~~Lr~Lq~~t~gf~~fIp~~f~~~ 266 (370)
T PRK05926 203 RLSSQGFLEIHKTAHSLGIPSNAT-MLCYHRETPEDIVTHMSKLRALQDKTSGFKNFILLKFASE 266 (370)
T ss_pred CCCHHHHHHHHHHHHHcCCcccCc-eEEeCCCCHHHHHHHHHHHHhcCCccCCeeeeEecccCCC
Confidence 3456678888889999999888 4444445677777665554433333457888888988644
No 140
>PRK11354 kil FtsZ inhibitor protein; Reviewed
Probab=30.75 E-value=1.1e+02 Score=24.19 Aligned_cols=54 Identities=9% Similarity=0.199 Sum_probs=34.9
Q ss_pred eEEEeCCCEEEEEe-EEEecCCC-CeeEEEEEcCCCCcceEEEeccccCccchhhhhhhhhhhhhhhhcceEEEEE-eCC
Q 035723 92 SAAAKQGCWSFLKG-GFVLDSPS-NLSILFFQNSDDRDINIAVASASLQPFTDEQWRFNQQYIINTERKRAVTIHA-ADG 168 (528)
Q Consensus 92 ~~~v~~~~Wt~l~g-~~t~~~~~-~~~~ly~E~~~~~~~~f~vDd~~l~~~~~~~w~~~a~~~Ie~~Rk~~~~v~v-~d~ 168 (528)
...|.+|--++-+| +|+.+++. ..-.||+-+- ||+.|..|..|.| +|.
T Consensus 13 Rq~V~PG~~v~~~grty~ASAN~~~r~~LYl~~~-----------------------------~e~~~i~d~~IeVyL~~ 63 (73)
T PRK11354 13 RQCVTPGDYVLHEGRTYIASANNIKKRKLYIRTL-----------------------------TTKTCITDCMIKVFLGR 63 (73)
T ss_pred ccccCCceEEEEcCcEEEEEechhhCceEEEEee-----------------------------eEEEEEeeeEEEEEEcC
Confidence 35566777777777 56666552 2445666542 4556777777877 578
Q ss_pred CCCccC
Q 035723 169 SGDTLQ 174 (528)
Q Consensus 169 ~g~p~~ 174 (528)
.|+|+.
T Consensus 64 ~G~Plt 69 (73)
T PRK11354 64 DGLPVK 69 (73)
T ss_pred CCCccc
Confidence 888873
No 141
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=30.29 E-value=1.1e+02 Score=31.52 Aligned_cols=51 Identities=14% Similarity=0.187 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhCCceeeEEeeeccCC-------------CCCHHHHHHHHHHHHhCCCCEEE
Q 035723 353 VDRYISRLRELKRGGVLMDGIGLESHFT-------------VPNLPLMRAILDKLATLNLPIWL 403 (528)
Q Consensus 353 ~~~~~~~v~~l~~~G~~iDgIG~Q~H~~-------------~p~~~~i~~~L~~~a~~glpI~i 403 (528)
....++.++.++++++|+|+|-+..... ...-++..+++++|.+.|+.+.+
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~ 91 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAP 91 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEE
Confidence 3456677777777888888876542110 00113455666777677766554
No 142
>PF07680 DoxA: TQO small subunit DoxA; InterPro: IPR011636 Thiosulphate:quinone oxidoreductase (TQO) catalyses one of the early steps in elemental sulphur oxidation. A novel TQO enzyme was purified from the thermo-acidophilic archaeon Acidianus ambivalens and shown to consist of a large subunit (DoxD) and a smaller subunit (DoxA). The DoxD- and DoxA-like two subunits are fused together in a single polypeptide in Q8AAF0 from SWISSPROT.
Probab=30.11 E-value=2.9e+02 Score=24.74 Aligned_cols=98 Identities=16% Similarity=0.067 Sum_probs=60.2
Q ss_pred EEeCCCEEEEEEEEEEccCCCc----EEEEEEEEeCCe-eEEeeeEEEeCCCEEEEEeEEEecCCCCeeEEEEEcCCCCc
Q 035723 53 NLTPGTIYCFSIWLKIEGANSA----HVRASLKTENSV-YNCVGSAAAKQGCWSFLKGGFVLDSPSNLSILFFQNSDDRD 127 (528)
Q Consensus 53 ~l~~G~~Y~vSawVk~~~g~~~----~~~vt~~~~~g~-y~~~~~~~v~~~~Wt~l~g~~t~~~~~~~~~ly~E~~~~~~ 127 (528)
.++.|. +++-|.-.+|.+. .+.+.+...+|+ +.+..+.....=-|..++..|.....+...-|.+--...++
T Consensus 25 ~~~~~~---L~f~vyr~~G~D~Ygsfl~~i~l~d~~g~vv~~~~~~~L~~lP~~~i~N~Yv~~~~~g~~gl~vpLGakA~ 101 (133)
T PF07680_consen 25 LIENGT---LSFHVYRVEGPDVYGSFLIGIQLKDSTGHVVLNWDQEKLSSLPKSNIKNDYVAKVKPGKHGLVVPLGAKAT 101 (133)
T ss_pred EEeCCe---EEEEEEEcCCCccCCceeeEEEEECCCCCEEEEeCHHHhhhCChhHcCccEEccccCCceeEEEEcCCcEE
Confidence 466665 7888888888542 455666656665 44555555666678888888876555444555554321444
Q ss_pred ceEEEeccccCccchhhhhhhhhhhhhhhhcceEEEEEeCCCCCcc
Q 035723 128 INIAVASASLQPFTDEQWRFNQQYIINTERKRAVTIHAADGSGDTL 173 (528)
Q Consensus 128 ~~f~vDd~~l~~~~~~~w~~~a~~~Ie~~Rk~~~~v~v~d~~g~p~ 173 (528)
+.+.+. +.+ -+++.+|++.|.+|...
T Consensus 102 i~L~~~-~~l-------------------~~g~Y~l~L~disG~~w 127 (133)
T PF07680_consen 102 ITLPLP-DHL-------------------PPGTYTLKLYDISGITW 127 (133)
T ss_pred EEecCC-Ccc-------------------CCCcEEEEEEcCCCCee
Confidence 444432 111 25788999999887554
No 143
>PF06483 ChiC: Chitinase C; InterPro: IPR009470 This ~170 aa region is found at the C-terminal to the catalytic domain (IPR001223 from INTERPRO) found in members of glycoside hydrolase family 18.
Probab=30.05 E-value=1.5e+02 Score=27.88 Aligned_cols=28 Identities=11% Similarity=0.245 Sum_probs=22.2
Q ss_pred EEeCCCEEEEEEEEEEccCCCcEEEEEE
Q 035723 53 NLTPGTIYCFSIWLKIEGANSAHVRASL 80 (528)
Q Consensus 53 ~l~~G~~Y~vSawVk~~~g~~~~~~vt~ 80 (528)
.|.+|.+|++..--+|.-..+.+++|++
T Consensus 127 slapG~s~~~~~~YyLPiSgPsN~tv~~ 154 (180)
T PF06483_consen 127 SLAPGASVELDMVYYLPISGPSNFTVNI 154 (180)
T ss_pred ccCCCCEEEEeEEEEeccCCCceEEEEE
Confidence 5889999999999888776666776654
No 144
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=30.02 E-value=79 Score=32.54 Aligned_cols=63 Identities=11% Similarity=0.176 Sum_probs=39.9
Q ss_pred CccCcchHHHHHHHHHhcCceEE------EeeeeeCCCCCCcc-------------cc-----cCCChHHHHHHHHHHHH
Q 035723 230 GKINYTIADQMMEFVRSNQLIAR------GHNIFWEDPKYTPA-------------WV-----RNLTGPALQSAVNSRIQ 285 (528)
Q Consensus 230 G~~~~~~~D~~v~~a~~~gi~vr------GH~L~W~~~~~~P~-------------W~-----~~~~~~~~~~~~~~~I~ 285 (528)
|.|+-+....++++|+++||.|. ||+..|-.. .|+ |- ...+.++..+.+++-++
T Consensus 63 ~~yT~~di~elv~yA~~rgI~vIPEId~PGH~~a~~~~--ypel~~~~~~~~~~~~~~~~~~~l~~~~p~t~~f~~~l~~ 140 (311)
T cd06570 63 LYYTQEQIREVVAYARDRGIRVVPEIDVPGHASAIAVA--YPELASGPGPYVIERGWGVFEPLLDPTNEETYTFLDNLFG 140 (311)
T ss_pred CccCHHHHHHHHHHHHHcCCEEEEeecCccchHHHHHh--CHHhccCCCccccccccccCCCccCCCChhHHHHHHHHHH
Confidence 45666677889999999999875 888766431 121 10 01233556666777777
Q ss_pred HHHHHccCc
Q 035723 286 SLMNKYKEE 294 (528)
Q Consensus 286 ~v~~rY~g~ 294 (528)
+++.-|.++
T Consensus 141 E~~~lF~~~ 149 (311)
T cd06570 141 EMAELFPDE 149 (311)
T ss_pred HHHHhCCCC
Confidence 777666543
No 145
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=29.87 E-value=5.9e+02 Score=31.31 Aligned_cols=93 Identities=10% Similarity=0.046 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHccCceeEEEeecccccc------------------ccc-------ccccChHHHHHHHHHHHhhCCC
Q 035723 278 SAVNSRIQSLMNKYKEEFIHWDVSNEMLHF------------------DFY-------EQRLGHDATLHFYETAHQSDPL 332 (528)
Q Consensus 278 ~~~~~~I~~v~~rY~g~v~~WDVvNE~~~~------------------~~~-------~~~~G~d~~~~af~~Ar~~dP~ 332 (528)
+.++.|++..+.+--+.++-.|-.|..-+- ++- ......+|+....+.+.++..+
T Consensus 625 ~vv~~f~~~~~~~GidifrifD~lN~~~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~Gad 704 (1143)
T TIGR01235 625 NVVKYFVKQAAQGGIDIFRVFDSLNWVENMRVGMDAVAEAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEKAGAH 704 (1143)
T ss_pred HHHHHHHHHHHHcCCCEEEECccCcCHHHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHcCCC
Confidence 446667777777766778888988876431 010 1111236666666666665543
Q ss_pred cEEEeecCCcccCCCCcchhHHHHHHHHHHHHhC-CceeeEEeeeccCCC
Q 035723 333 ATLFMNEFNVVETCSDENSTVDRYISRLRELKRG-GVLMDGIGLESHFTV 381 (528)
Q Consensus 333 a~L~~Ndy~~~~~~~~~~~~~~~~~~~v~~l~~~-G~~iDgIG~Q~H~~~ 381 (528)
.|.+-|-.-+ .++....++++.|+++ ++| |++|+|-..
T Consensus 705 -~I~ikDt~Gl-------l~P~~~~~Lv~~lk~~~~~p---i~~H~Hdt~ 743 (1143)
T TIGR01235 705 -ILGIKDMAGL-------LKPAAAKLLIKALREKTDLP---IHFHTHDTS 743 (1143)
T ss_pred -EEEECCCcCC-------cCHHHHHHHHHHHHHhcCCe---EEEEECCCC
Confidence 6666664332 1355666677777654 344 566777544
No 146
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.76 E-value=58 Score=31.90 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCCccCCcceeeeee
Q 035723 160 AVTIHAADGSGDTLQGAEITIEQV 183 (528)
Q Consensus 160 ~~~v~v~d~~g~p~~~a~v~v~~~ 183 (528)
-++.+|+|.+|+||++|.|.|=|.
T Consensus 74 ~l~G~VlD~~G~Pv~~A~VEiWQA 97 (226)
T COG3485 74 LLEGRVLDGNGRPVPDALVEIWQA 97 (226)
T ss_pred EEEEEEECCCCCCCCCCEEEEEEc
Confidence 688899999999999999998774
No 147
>PRK08445 hypothetical protein; Provisional
Probab=29.65 E-value=5.4e+02 Score=26.81 Aligned_cols=125 Identities=15% Similarity=0.096 Sum_probs=76.5
Q ss_pred cChHHHHHHHHHHHhhCCCcEEEeecCCcccCCCCcchh--HHHHHHHHHHHHhCCc-eeeEEeeeccCC------CC--
Q 035723 314 LGHDATLHFYETAHQSDPLATLFMNEFNVVETCSDENST--VDRYISRLRELKRGGV-LMDGIGLESHFT------VP-- 382 (528)
Q Consensus 314 ~G~d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~--~~~~~~~v~~l~~~G~-~iDgIG~Q~H~~------~p-- 382 (528)
+..+++...++.+|+..|+.++.- |...+-.. -.+ .....+.+++|+++|+ .+-|+|+..--. .|
T Consensus 103 ~~~e~~~~l~~~Ik~~~p~i~~~a--~s~~ei~~--~a~~~~~~~~e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~ 178 (348)
T PRK08445 103 LKIEWYENLVSHIAQKYPTITIHG--FSAVEIDY--IAKISKISIKEVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKK 178 (348)
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEE--ccHHHHHH--HHHHhCCCHHHHHHHHHHcCCCCCCCCceeeCCHHHHHhhCCCC
Confidence 456899999999999999988631 11100000 000 0012456788999996 455777773221 12
Q ss_pred -CHHHHHHHHHHHHhCCCCEEEEe-eecCCCCChhHHHHHHHHHHHHHhcCCCeeEEEEEeeec
Q 035723 383 -NLPLMRAILDKLATLNLPIWLTE-VDISGKLDKETQAVYLEQVLREGFSHPSVNGIMLWTALH 444 (528)
Q Consensus 383 -~~~~i~~~L~~~a~~glpI~iTE-~dv~~~~~~~~QA~~~~~~~~~~~s~p~v~gi~~Wg~~d 444 (528)
+..+..+.++...++|+++-.|= ++.. ++.+..++.+..+-++--...++..|..|-|..
T Consensus 179 ~t~~~~i~~i~~a~~~Gi~~~sg~i~G~~--Et~edr~~~l~~lreLq~~~~g~~~fi~~~~~p 240 (348)
T PRK08445 179 LDSDRWLEVHRQAHLIGMKSTATMMFGTV--ENDEEIIEHWERIRDLQDETGGFRAFILWSFQP 240 (348)
T ss_pred CCHHHHHHHHHHHHHcCCeeeeEEEecCC--CCHHHHHHHHHHHHHHHHHhCCeeEEeccccCC
Confidence 45566788999999999988773 3433 345666666555444433445677788887754
No 148
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases. Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....
Probab=29.39 E-value=50 Score=31.24 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCCccCCcceeeeee
Q 035723 160 AVTIHAADGSGDTLQGAEITIEQV 183 (528)
Q Consensus 160 ~~~v~v~d~~g~p~~~a~v~v~~~ 183 (528)
-+..+|+|.+|+||+||.|.|=|.
T Consensus 31 ~l~G~V~D~~g~Pv~~A~veiWqa 54 (183)
T PF00775_consen 31 VLHGRVIDTDGKPVPGALVEIWQA 54 (183)
T ss_dssp EEEEEEEETTSSB-TTEEEEEEE-
T ss_pred EEEEEEECCCCCCCCCcEEEEEec
Confidence 567889999999999999999764
No 149
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=29.38 E-value=4.2e+02 Score=24.13 Aligned_cols=77 Identities=10% Similarity=0.043 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhCCceeeEEeeeccCC-CCC--HHHHHHHHHHHHh---CCCCEEEEeeecCCCCChhHHHHHHHHHHHH
Q 035723 354 DRYISRLRELKRGGVLMDGIGLESHFT-VPN--LPLMRAILDKLAT---LNLPIWLTEVDISGKLDKETQAVYLEQVLRE 427 (528)
Q Consensus 354 ~~~~~~v~~l~~~G~~iDgIG~Q~H~~-~p~--~~~i~~~L~~~a~---~glpI~iTE~dv~~~~~~~~QA~~~~~~~~~ 427 (528)
...++.++...+.| .|+|-+...+. .++ .+.+.+.+.+.++ .++|+.+.-.-... .+. +.+..+.+.
T Consensus 65 ~~~~~~a~~a~~~G--ad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~-~~~----~~~~~~~~~ 137 (201)
T cd00945 65 EVKVAEVEEAIDLG--ADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGL-KTA----DEIAKAARI 137 (201)
T ss_pred HHHHHHHHHHHHcC--CCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCC-CCH----HHHHHHHHH
Confidence 45567778888877 47777764443 233 4556666666554 48998887653332 112 233333443
Q ss_pred HhcCCCeeEEE
Q 035723 428 GFSHPSVNGIM 438 (528)
Q Consensus 428 ~~s~p~v~gi~ 438 (528)
+ .++++.+|-
T Consensus 138 ~-~~~g~~~iK 147 (201)
T cd00945 138 A-AEAGADFIK 147 (201)
T ss_pred H-HHhCCCEEE
Confidence 3 357777774
No 150
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=29.30 E-value=5.9e+02 Score=25.47 Aligned_cols=21 Identities=19% Similarity=0.064 Sum_probs=14.4
Q ss_pred CccCcchHHHHHHHHHhcCce
Q 035723 230 GKINYTIADQMMEFVRSNQLI 250 (528)
Q Consensus 230 G~~~~~~~D~~v~~a~~~gi~ 250 (528)
|+.|++...++++|..++|+.
T Consensus 15 g~iD~~~~~~li~~l~~~Gv~ 35 (279)
T cd00953 15 NKIDKEKFKKHCENLISKGID 35 (279)
T ss_pred CCcCHHHHHHHHHHHHHcCCc
Confidence 666777777777777776654
No 151
>COG3233 Predicted deacetylase [General function prediction only]
Probab=29.00 E-value=4.3e+02 Score=25.90 Aligned_cols=76 Identities=17% Similarity=0.243 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhhCC--CcE-EEe----ecCCcccCCCCcchhHHHHHHHHHHHHhCCceeeEEeeeccC--CC--CC--
Q 035723 317 DATLHFYETAHQSDP--LAT-LFM----NEFNVVETCSDENSTVDRYISRLRELKRGGVLMDGIGLESHF--TV--PN-- 383 (528)
Q Consensus 317 d~~~~af~~Ar~~dP--~a~-L~~----Ndy~~~~~~~~~~~~~~~~~~~v~~l~~~G~~iDgIG~Q~H~--~~--p~-- 383 (528)
.++...-+++.+.++ ... |++ |||.+ .+..+|++++.++.++| |-+++|++- .. |+
T Consensus 18 ~~~~~i~~~ide~~~~~~t~lLViPn~~~~~~l--------~~d~rf~~~l~~r~e~G---del~lHGy~h~d~~~~gEF 86 (233)
T COG3233 18 PTLSNIDAAIDEYGAQNSTVLLVIPNHANDYPL--------SKDPRFVDLLTEREEEG---DELVLHGYDHIDTKRRGEF 86 (233)
T ss_pred hhHHHHHHHHHHhCCCCceEEEEeeccCCCCCc--------ccChHHHHHHHHHHhcC---CEEEEechhhccccCcccc
Confidence 345556666666554 333 444 44444 24578999999999999 888888754 32 11
Q ss_pred ------H--HHHHHHHHHHHhCCCCEEE
Q 035723 384 ------L--PLMRAILDKLATLNLPIWL 403 (528)
Q Consensus 384 ------~--~~i~~~L~~~a~~glpI~i 403 (528)
. ..+...++.|...|.|+++
T Consensus 87 ~~l~~~eA~~RL~~a~~~l~~~G~~~~~ 114 (233)
T COG3233 87 ACLRAHEARLRLMAAIEELEALGFPLRG 114 (233)
T ss_pred ccchHHHHHHHHHHHHHHHHHcCCccee
Confidence 1 2356777788899999554
No 152
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=28.98 E-value=6.7e+02 Score=26.01 Aligned_cols=122 Identities=15% Similarity=0.020 Sum_probs=76.7
Q ss_pred cChHHHHHHHHHHHhhCCCcEEEeecCCccc----CCCCcchhHHHHHHHHHHHHhCCc-eeeEEeeeccCC------CC
Q 035723 314 LGHDATLHFYETAHQSDPLATLFMNEFNVVE----TCSDENSTVDRYISRLRELKRGGV-LMDGIGLESHFT------VP 382 (528)
Q Consensus 314 ~G~d~~~~af~~Ar~~dP~a~L~~Ndy~~~~----~~~~~~~~~~~~~~~v~~l~~~G~-~iDgIG~Q~H~~------~p 382 (528)
+..+++.++++.+|+..|+..+-..-...+. ..+. ...+.+++|+++|+ .+-+.|+..+.. .|
T Consensus 109 ~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~------~~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~ 182 (351)
T TIGR03700 109 LPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGL------PTEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICP 182 (351)
T ss_pred CCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCC------CHHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCC
Confidence 3458999999999999999887553211100 0000 01344678888886 344557766531 12
Q ss_pred ---CHHHHHHHHHHHHhCCCCEEEEee-ecCCCCChhHHHHHHHHHHHHHhcCCCeeEEEEEeee
Q 035723 383 ---NLPLMRAILDKLATLNLPIWLTEV-DISGKLDKETQAVYLEQVLREGFSHPSVNGIMLWTAL 443 (528)
Q Consensus 383 ---~~~~i~~~L~~~a~~glpI~iTE~-dv~~~~~~~~QA~~~~~~~~~~~s~p~v~gi~~Wg~~ 443 (528)
+.++..+.++...++|+++-.+-+ +. .++.+..++.+..+-.+--....+..++-|.|.
T Consensus 183 ~~~~~~~~l~~i~~a~~~Gi~~~sg~i~Gl--gEt~edrv~~l~~Lr~l~~~~~~f~~fiP~~f~ 245 (351)
T TIGR03700 183 EKISAERWLEIHRTAHELGLKTNATMLYGH--IETPAHRVDHMLRLRELQDETGGFQAFIPLAFQ 245 (351)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcceEEEeeC--CCCHHHHHHHHHHHHHhhHhhCCceEEEeeccc
Confidence 345666889999999999877643 44 245777777776665554444456677777765
No 153
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=28.95 E-value=8.5e+02 Score=27.45 Aligned_cols=55 Identities=18% Similarity=0.208 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHhhCCCcEEEeecCCcccCCCCcchhHHHHHHHHHHHHhC-CceeeEEeeeccCCC
Q 035723 316 HDATLHFYETAHQSDPLATLFMNEFNVVETCSDENSTVDRYISRLRELKRG-GVLMDGIGLESHFTV 381 (528)
Q Consensus 316 ~d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~v~~l~~~-G~~iDgIG~Q~H~~~ 381 (528)
.+|+....+.+.++..+ .|.+-|-.-+ ..+....++++.|+++ ++| |++|+|-..
T Consensus 148 ~~~~~~~~~~~~~~Gad-~I~i~Dt~G~-------~~P~~v~~lv~~lk~~~~~p---i~~H~Hnt~ 203 (582)
T TIGR01108 148 LETYLDLAEELLEMGVD-SICIKDMAGI-------LTPKAAYELVSALKKRFGLP---VHLHSHATT 203 (582)
T ss_pred HHHHHHHHHHHHHcCCC-EEEECCCCCC-------cCHHHHHHHHHHHHHhCCCc---eEEEecCCC
Confidence 46666666666665433 5666664332 1345556666666653 333 567777544
No 154
>PRK10425 DNase TatD; Provisional
Probab=28.82 E-value=3.7e+02 Score=26.73 Aligned_cols=17 Identities=35% Similarity=0.542 Sum_probs=8.8
Q ss_pred HHHHHHHhCCCCEEEEe
Q 035723 389 AILDKLATLNLPIWLTE 405 (528)
Q Consensus 389 ~~L~~~a~~glpI~iTE 405 (528)
+.|+.-.++++||-|--
T Consensus 112 ~ql~lA~~~~~Pv~iH~ 128 (258)
T PRK10425 112 AQLAIAAELNMPVFMHC 128 (258)
T ss_pred HHHHHHHHhCCCeEEEE
Confidence 33333345677765553
No 155
>PRK15315 outer membrane protein RatA; Provisional
Probab=28.53 E-value=88 Score=38.65 Aligned_cols=48 Identities=17% Similarity=0.349 Sum_probs=32.3
Q ss_pred cccCccchhhhhhhhhhhhhhhhc---ceEEEEEeCCCCCccCCcceeeee
Q 035723 135 ASLQPFTDEQWRFNQQYIINTERK---RAVTIHAADGSGDTLQGAEITIEQ 182 (528)
Q Consensus 135 ~~l~~~~~~~w~~~a~~~Ie~~Rk---~~~~v~v~d~~g~p~~~a~v~v~~ 182 (528)
+.|.+.+.+.|...-....-+..| -.++|++.|++|+|++++.+.|+.
T Consensus 1001 Itle~~d~a~w~~~~~~~a~KaKkGEti~L~VTvkDa~GNPv~~a~f~l~R 1051 (1865)
T PRK15315 1001 ITIEPVDPSQWYDGSDVHAVKVKKGETMQLKVTVKDASGNPIPEAPFVLTR 1051 (1865)
T ss_pred EEEeecChHHhccccccccceeccCCeEEEEEEEecCCCCCCCCCcEEEEe
Confidence 456777777885431112223333 467888899999999999998863
No 156
>PLN02489 homocysteine S-methyltransferase
Probab=28.35 E-value=3.8e+02 Score=27.86 Aligned_cols=47 Identities=30% Similarity=0.454 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhCCceeeEEeeeccCCCCCHHHHHHHHHHHHhC--CCCEEEEe
Q 035723 354 DRYISRLRELKRGGVLMDGIGLESHFTVPNLPLMRAILDKLATL--NLPIWLTE 405 (528)
Q Consensus 354 ~~~~~~v~~l~~~G~~iDgIG~Q~H~~~p~~~~i~~~L~~~a~~--glpI~iTE 405 (528)
..|...++.|++.| +|.|-+.. .|++.+++.+++.+... ++|+||+=
T Consensus 167 ~~~~~qi~~l~~~g--vD~i~~ET---~~~l~E~~a~~~~~~~~~~~~p~~iS~ 215 (335)
T PLN02489 167 DFHRRRLQVLAEAG--PDLIAFET---IPNKLEAQAYVELLEEENIKIPAWISF 215 (335)
T ss_pred HHHHHHHHHHHhCC--CCEEEEec---cCChHHHHHHHHHHHHcCCCCeEEEEE
Confidence 34556677777776 68876632 36777888888887766 58999983
No 157
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=28.19 E-value=3.4e+02 Score=28.09 Aligned_cols=53 Identities=19% Similarity=0.362 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhCCceeeEEeeeccCCCC--CHHHHHH-------HHHHHHhCCCCEEEEeeecC
Q 035723 353 VDRYISRLRELKRGGVLMDGIGLESHFTVP--NLPLMRA-------ILDKLATLNLPIWLTEVDIS 409 (528)
Q Consensus 353 ~~~~~~~v~~l~~~G~~iDgIG~Q~H~~~p--~~~~i~~-------~L~~~a~~glpI~iTE~dv~ 409 (528)
.+...++++.+.+.+ +.-+|+|.|++.. +.+.+.+ ..+++.+.|.+ +..+|+.
T Consensus 147 ~~e~~~~~~~~~~~~--l~l~Gl~~H~gs~~~d~~~~~~~~~~~~~~~~~l~~~g~~--~~~id~G 208 (368)
T cd06810 147 LSEARAALERAKELD--LRLVGLHFHVGSQILDLETIVQALSDARELIEELVEMGFP--LEMLDLG 208 (368)
T ss_pred HHHHHHHHHHHHhCC--CcEEEEEEcCCcCCCCHHHHHHHHHHHHHHHHHHHhcCCC--CCEEEeC
Confidence 345566666666665 7888999999762 3443333 33344444554 4555654
No 158
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=28.18 E-value=1.1e+02 Score=31.84 Aligned_cols=49 Identities=12% Similarity=0.222 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhCCceeeEEeeeccCCC--------C-CHHHHHHHHHHHHhCCCCEE
Q 035723 354 DRYISRLRELKRGGVLMDGIGLESHFTV--------P-NLPLMRAILDKLATLNLPIW 402 (528)
Q Consensus 354 ~~~~~~v~~l~~~G~~iDgIG~Q~H~~~--------p-~~~~i~~~L~~~a~~glpI~ 402 (528)
+..++.+++++++|+|+|+|.+...... + .-++..+++++|.+.|+.+.
T Consensus 24 ~~v~~~~~~~~~~~iP~d~i~lD~~~~~~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~ 81 (339)
T cd06604 24 EEVREIADEFRERDIPCDAIYLDIDYMDGYRVFTWDKERFPDPKELIKELHEQGFKVV 81 (339)
T ss_pred HHHHHHHHHHHHhCCCcceEEECchhhCCCCceeeccccCCCHHHHHHHHHHCCCEEE
Confidence 4456666777777777777776643210 0 11234455666666666543
No 159
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=27.92 E-value=9.1e+02 Score=27.31 Aligned_cols=92 Identities=12% Similarity=0.129 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHccCceeEEEeecccccc----------cc-------c--ccccChHHHHHHHHHHHhhCCCcEEEeec
Q 035723 279 AVNSRIQSLMNKYKEEFIHWDVSNEMLHF----------DF-------Y--EQRLGHDATLHFYETAHQSDPLATLFMNE 339 (528)
Q Consensus 279 ~~~~~I~~v~~rY~g~v~~WDVvNE~~~~----------~~-------~--~~~~G~d~~~~af~~Ar~~dP~a~L~~Nd 339 (528)
.+..+|+..+..--+.|+-.|-+|+..+- .. + ....-.+|+....+.+.++.. -.|.+-|
T Consensus 98 vv~~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Ga-d~i~i~D 176 (593)
T PRK14040 98 VVERFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGV-DSLCIKD 176 (593)
T ss_pred HHHHHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCC-CEEEECC
Confidence 34556666666656667777777765310 00 0 011123677777777776654 4666766
Q ss_pred CCcccCCCCcchhHHHHHHHHHHHHhC-CceeeEEeeeccCCC
Q 035723 340 FNVVETCSDENSTVDRYISRLRELKRG-GVLMDGIGLESHFTV 381 (528)
Q Consensus 340 y~~~~~~~~~~~~~~~~~~~v~~l~~~-G~~iDgIG~Q~H~~~ 381 (528)
-+-+- .+....++++.|+++ ++| ||+|+|-..
T Consensus 177 t~G~l-------~P~~~~~lv~~lk~~~~~p---i~~H~Hnt~ 209 (593)
T PRK14040 177 MAGLL-------KPYAAYELVSRIKKRVDVP---LHLHCHATT 209 (593)
T ss_pred CCCCc-------CHHHHHHHHHHHHHhcCCe---EEEEECCCC
Confidence 44321 355666777777654 333 678888654
No 160
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=27.84 E-value=5.5e+02 Score=24.65 Aligned_cols=147 Identities=10% Similarity=0.027 Sum_probs=78.4
Q ss_pred chHHHHHHHHHhcCceEEEeeeeeCCCCCCccc---ccCCChHHHHHHHHHHHHHHHHHccCceeEEEeecccccccccc
Q 035723 235 TIADQMMEFVRSNQLIARGHNIFWEDPKYTPAW---VRNLTGPALQSAVNSRIQSLMNKYKEEFIHWDVSNEMLHFDFYE 311 (528)
Q Consensus 235 ~~~D~~v~~a~~~gi~vrGH~L~W~~~~~~P~W---~~~~~~~~~~~~~~~~I~~v~~rY~g~v~~WDVvNE~~~~~~~~ 311 (528)
...+..++.+.+.|+... +.++=- .+.. ....+.++..+.+.+.|+...++ +..+ .+|=+. .
T Consensus 67 ~~i~~~~~~~~~~g~~~i-~i~~~~----s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~-g~~v----~~~~~~-~---- 131 (237)
T PF00682_consen 67 EDIERAVEAAKEAGIDII-RIFISV----SDLHIRKNLNKSREEALERIEEAVKYAKEL-GYEV----AFGCED-A---- 131 (237)
T ss_dssp HHHHHHHHHHHHTTSSEE-EEEEET----SHHHHHHHTCSHHHHHHHHHHHHHHHHHHT-TSEE----EEEETT-T----
T ss_pred HHHHHHHHhhHhccCCEE-EecCcc----cHHHHHHhhcCCHHHHHHHHHHHHHHHHhc-CCce----EeCccc-c----
Confidence 345666777788898765 233211 2222 22345566666776666666443 3344 122111 1
Q ss_pred cccChHHHHHHHHHHHhhCCCcEEEeec-CCcccCCCCcchhHHHHHHHHHHHHhCCceeeEEeeeccCCCCCHHHHHHH
Q 035723 312 QRLGHDATLHFYETAHQSDPLATLFMNE-FNVVETCSDENSTVDRYISRLRELKRGGVLMDGIGLESHFTVPNLPLMRAI 390 (528)
Q Consensus 312 ~~~G~d~~~~af~~Ar~~dP~a~L~~Nd-y~~~~~~~~~~~~~~~~~~~v~~l~~~G~~iDgIG~Q~H~~~p~~~~i~~~ 390 (528)
....++++...++.+.++.++. +.+.| ++.. .+..+.++++.++++--. -.||+|+|-...- .+...
T Consensus 132 ~~~~~~~~~~~~~~~~~~g~~~-i~l~Dt~G~~--------~P~~v~~lv~~~~~~~~~-~~l~~H~Hnd~Gl--a~An~ 199 (237)
T PF00682_consen 132 SRTDPEELLELAEALAEAGADI-IYLADTVGIM--------TPEDVAELVRALREALPD-IPLGFHAHNDLGL--AVANA 199 (237)
T ss_dssp GGSSHHHHHHHHHHHHHHT-SE-EEEEETTS-S---------HHHHHHHHHHHHHHSTT-SEEEEEEBBTTS---HHHHH
T ss_pred ccccHHHHHHHHHHHHHcCCeE-EEeeCccCCc--------CHHHHHHHHHHHHHhccC-CeEEEEecCCccc--hhHHH
Confidence 1334688899999999998766 55555 3331 355666777777664322 5688999965431 13334
Q ss_pred HHHHHhCCCC-EEEEeeecC
Q 035723 391 LDKLATLNLP-IWLTEVDIS 409 (528)
Q Consensus 391 L~~~a~~glp-I~iTE~dv~ 409 (528)
|..+ ..|.. |..|=.++.
T Consensus 200 laA~-~aGa~~id~t~~GlG 218 (237)
T PF00682_consen 200 LAAL-EAGADRIDGTLGGLG 218 (237)
T ss_dssp HHHH-HTT-SEEEEBGGGGS
T ss_pred HHHH-HcCCCEEEccCccCC
Confidence 4444 24654 444444443
No 161
>PF13501 SoxY: Sulfur oxidation protein SoxY; PDB: 2OXG_B 2OX5_B 2OXH_F 2NNF_A 2NNC_B.
Probab=27.76 E-value=2.2e+02 Score=24.54 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=22.4
Q ss_pred CCEEEEEEEEEEccCCCcEEEEEEEEeCCe-eEEeeeEEEe
Q 035723 57 GTIYCFSIWLKIEGANSAHVRASLKTENSV-YNCVGSAAAK 96 (528)
Q Consensus 57 G~~Y~vSawVk~~~g~~~~~~vt~~~~~g~-y~~~~~~~v~ 96 (528)
+..=.||..+|+.. ++.+++-.++.||+ |.....+.++
T Consensus 69 ~~~~~~stRir~~~--~s~V~ava~t~dG~~~~a~~~Vkvt 107 (111)
T PF13501_consen 69 GGEPYVSTRIRMAQ--TSPVRAVAETSDGKLYMASKEVKVT 107 (111)
T ss_dssp CCEEEEEEEEE-SS--SEEEEEEEEETTTEEEEEEEEEEEE
T ss_pred CCCceeEEEEEecC--cccEEEEEEecCCeEEEeeEEEEee
Confidence 66666777777776 45555545666777 4444445554
No 162
>KOG2649 consensus Zinc carboxypeptidase [General function prediction only]
Probab=27.75 E-value=1e+02 Score=33.53 Aligned_cols=47 Identities=15% Similarity=0.158 Sum_probs=35.1
Q ss_pred eeeeecCCceEEEeeeeeeEEEEEEeCC-eeeEEEEEEecCCCeeEEEE
Q 035723 479 VTGHTDGHGSFSFYGFLGEYTVSVKYGN-RTANSTFSLCQGDETRHVTI 526 (528)
Q Consensus 479 ~~~~t~~~G~~~~rgf~G~y~v~v~~~~-~~~~~~~~l~~~~~~~~~~i 526 (528)
...+|..+|-|=--.=-|+|.||++++| ...++++.|+. ..+..+.+
T Consensus 404 Hdv~T~~~GDYWRLL~PG~y~vta~A~Gy~~~tk~v~V~~-~~a~~~df 451 (500)
T KOG2649|consen 404 HDVTTAKEGDYWRLLPPGKYIITASAEGYDPVTKTVTVPP-DRAARVNF 451 (500)
T ss_pred CceeecCCCceEEeeCCcceEEEEecCCCcceeeEEEeCC-CCccceeE
Confidence 3567777787765566899999999999 67889999988 44334433
No 163
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=27.69 E-value=32 Score=26.76 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=28.6
Q ss_pred hhhhhhhhhhhhhhhcceEEEEEeCCCCCccCCc
Q 035723 143 EQWRFNQQYIINTERKRAVTIHAADGSGDTLQGA 176 (528)
Q Consensus 143 ~~w~~~a~~~Ie~~Rk~~~~v~v~d~~g~p~~~a 176 (528)
..||..+..++....+++=+|.|+|.+|+.|.-.
T Consensus 28 ~r~Rt~S~k~~~~~~~G~WrV~V~~~~G~~l~~~ 61 (66)
T PF11141_consen 28 GRWRTWSSKQNFPDQPGDWRVEVVDEDGQVLGSL 61 (66)
T ss_pred CCEEEEEEeecCCCCCcCEEEEEEcCCCCEEEEE
Confidence 3499988888888899999999999999887543
No 164
>KOG2566 consensus Beta-glucocerebrosidase [Carbohydrate transport and metabolism]
Probab=27.58 E-value=7.8e+02 Score=26.30 Aligned_cols=205 Identities=16% Similarity=0.193 Sum_probs=110.7
Q ss_pred cCceEEEeeeeeCCCCCCcccccC---------C---ChHHHHHHHHHHHHHHHHHccC-ceeEEEe--eccccccc--c
Q 035723 247 NQLIARGHNIFWEDPKYTPAWVRN---------L---TGPALQSAVNSRIQSLMNKYKE-EFIHWDV--SNEMLHFD--F 309 (528)
Q Consensus 247 ~gi~vrGH~L~W~~~~~~P~W~~~---------~---~~~~~~~~~~~~I~~v~~rY~g-~v~~WDV--vNE~~~~~--~ 309 (528)
.++++-.- -|. .|.|+.. + ..+...+.+.+|+-...+.|.. .|.-|-+ =|||-.++ .
T Consensus 192 ~~lklfAs--PWs----aPgWlKttg~m~G~G~l~g~~~d~yhqtya~YfvkFleaY~~~gi~FWglt~qNEPstG~d~~ 265 (518)
T KOG2566|consen 192 GNLKLFAS--PWS----APGWLKTTGRMNGKGALLGDPGDIYHQTYARYFVKFLEAYAKHGIQFWGLTTQNEPSTGSDKK 265 (518)
T ss_pred CCceEEec--CCC----CCceeeecccccccccccCCCCchhHHHHHHHHHHHHHHHHhcCceEEeecccCCCCcCcccC
Confidence 34555443 365 7999974 1 1235778889999888888875 5666765 58987543 1
Q ss_pred c-ccccC------hHHHHHHHHHHHh---hCCCcEEEeecCCcccCCCCcchhHHHHHHHHHHHHhCCceeeEEeeeccC
Q 035723 310 Y-EQRLG------HDATLHFYETAHQ---SDPLATLFMNEFNVVETCSDENSTVDRYISRLRELKRGGVLMDGIGLESHF 379 (528)
Q Consensus 310 ~-~~~~G------~d~~~~af~~Ar~---~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~v~~l~~~G~~iDgIG~Q~H~ 379 (528)
| .+.+| .|+++.-.-=|-+ .--++||+++|=+-...|.- .+-.+ .+-. +--.++||++|.+.
T Consensus 266 ~k~Qtl~ftae~qRdFik~dLGPaLa~s~~~knvkllilDD~Rg~LP~W----adtvl---nDpe-AakYv~GIaVHwY~ 337 (518)
T KOG2566|consen 266 WKWQTLGFTAETQRDFIKKDLGPALASSKTTKNVKLLILDDQRGLLPHW----ADTVL---NDPE-AAKYVHGIAVHWYQ 337 (518)
T ss_pred CceeecccCHHHHHHHHHHhcchhhhcCCcCCceEEEEecCCccCCCcc----chhhc---cChh-hhhhccceEEEeec
Confidence 2 12333 3555544333333 33479999998654333321 01111 1111 12368999998876
Q ss_pred CCCCHHHHHHHHHHHHh--CCCCEEEEeeecCCC-------CChhHHHHHHHHHHHHHhcCCCeeEEEEEeee-cCCC--
Q 035723 380 TVPNLPLMRAILDKLAT--LNLPIWLTEVDISGK-------LDKETQAVYLEQVLREGFSHPSVNGIMLWTAL-HPNG-- 447 (528)
Q Consensus 380 ~~p~~~~i~~~L~~~a~--~glpI~iTE~dv~~~-------~~~~~QA~~~~~~~~~~~s~p~v~gi~~Wg~~-d~~~-- 447 (528)
..-++.. .|+.-.+ ...=|.-||--.... .+-.+-.+|..+++.-.--| |.|-+=|++. |+.|
T Consensus 338 df~~pa~---~L~eTh~~hP~~fifgTEAc~Gy~~~d~v~~Gswdrae~yasdii~dlnn~--vtGWtdwNl~Ld~~GGP 412 (518)
T KOG2566|consen 338 DFLEPAK---HLDETHRKHPNTFIFGTEACAGYKSKDGVDLGSWDRAEQYASDIITDLNNH--VTGWTDWNLILDAQGGP 412 (518)
T ss_pred cccChhh---hhhhHHhhCCCeEEEeehhccccccccCccccchhhHHHHHHHHHHhhhhh--ccceeeeeeEecCcCCc
Confidence 5322221 3333222 233366677544331 11233345666777766555 9999999974 5543
Q ss_pred -C-----CcccccC---CCCCCchHHHHHHHH
Q 035723 448 -C-----YQMCLTD---NNLQNLPAGNIVDKL 470 (528)
Q Consensus 448 -~-----~~~gL~d---~d~~pKPAy~~~~~l 470 (528)
| ..+-+.+ ..|...|.+.++...
T Consensus 413 ~wv~nfvDspiIv~~t~~~fYKQPmfya~~hF 444 (518)
T KOG2566|consen 413 NWVSNFVDSPIIVNPTAQEFYKQPMFYALGHF 444 (518)
T ss_pred hhHhccCCCceEecHHHHHHhhccHHHHHHHH
Confidence 2 1222332 234456666666554
No 165
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=27.35 E-value=1.5e+02 Score=24.77 Aligned_cols=41 Identities=22% Similarity=0.410 Sum_probs=23.6
Q ss_pred eeecCCceEEEeee-eeeEEEEEEeCC-----eeeEEEEEEecCCCe
Q 035723 481 GHTDGHGSFSFYGF-LGEYTVSVKYGN-----RTANSTFSLCQGDET 521 (528)
Q Consensus 481 ~~t~~~G~~~~rgf-~G~y~v~v~~~~-----~~~~~~~~l~~~~~~ 521 (528)
..+|.+|.|++..- .|.|.+++=.++ ...+.+|+|.++..+
T Consensus 44 t~td~~G~Fti~~V~pGtY~L~ay~~g~~g~~~~~~~~ItV~~g~~~ 90 (95)
T PF14686_consen 44 TRTDSDGNFTIPNVRPGTYRLYAYADGIFGDYKVASDSITVSGGTTT 90 (95)
T ss_dssp EE--TTSEEE---B-SEEEEEEEEE----TTEEEEEEEEEE-T-EEE
T ss_pred EEeCCCCcEEeCCeeCcEeEEEEEEecccCceEEecceEEEcCCcEe
Confidence 46889999998654 599999997743 233678888855443
No 166
>COG4124 ManB Beta-mannanase [Carbohydrate transport and metabolism]
Probab=27.33 E-value=4.2e+02 Score=27.77 Aligned_cols=119 Identities=20% Similarity=0.239 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHccC---ceeEEEeecccccccccccccC-hHHHHHH---HHHHHhh--CCCcEEEeecCCcccCCC
Q 035723 277 QSAVNSRIQSLMNKYKE---EFIHWDVSNEMLHFDFYEQRLG-HDATLHF---YETAHQS--DPLATLFMNEFNVVETCS 347 (528)
Q Consensus 277 ~~~~~~~I~~v~~rY~g---~v~~WDVvNE~~~~~~~~~~~G-~d~~~~a---f~~Ar~~--dP~a~L~~Ndy~~~~~~~ 347 (528)
..+|...|-..+..|+- -...|--.=|+....||...-. .+|.+.+ ....++. .|.+|..+.-=+..+
T Consensus 160 Y~~~~ski~D~~~~~~s~~~vtiy~r~~mE~n~~~FwWg~~d~~~yk~lw~~~~dy~~~~r~l~~lk~~yspn~~~~--- 236 (355)
T COG4124 160 YDAMMSKIGDALAAYKSNQVVTIYWRPEMEMNSGWFWWGFWDPNQYKQLWIRLHDYLRKSRGLPWLKFMYSPNGGFK--- 236 (355)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEechhhccCCCeeeeccCCHHHHHHHHHHHHHHHhhccCCCeeEEEEcCCCCcc---
Confidence 45566677777777873 2567777777776666654433 3554332 2344444 788888774311111
Q ss_pred CcchhHHHHHHHHHHHHhCC-ceeeEEeeeccCCCC-C------HHHHHHHH----HHHHhCCCCEEEEeeecCC
Q 035723 348 DENSTVDRYISRLRELKRGG-VLMDGIGLESHFTVP-N------LPLMRAIL----DKLATLNLPIWLTEVDISG 410 (528)
Q Consensus 348 ~~~~~~~~~~~~v~~l~~~G-~~iDgIG~Q~H~~~p-~------~~~i~~~L----~~~a~~glpI~iTE~dv~~ 410 (528)
-...|+ .| ..+|-||+-.+...| + ...+.+.+ .+.+.+++|++++|++...
T Consensus 237 ----~~~~yY--------PGd~YVDiVGL~~ysd~~~n~~~~~~~~tyaelt~~gy~~~~~~nKPf~faElGp~~ 299 (355)
T COG4124 237 ----GLEAYY--------PGDNYVDIVGLDVYSDDPYNQGDTGRDKTYAELTGPGYNRVAGFNKPFGFAELGPEG 299 (355)
T ss_pred ----cchhcC--------CCCceeeeeeeeccccCccccccccccccHHHHhcCcchhhhhcCCceeeecccccC
Confidence 011221 23 467888888887554 1 11122222 3556889999999999875
No 167
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=27.24 E-value=56 Score=30.97 Aligned_cols=25 Identities=24% Similarity=0.261 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCCccCCcceeeeee
Q 035723 159 RAVTIHAADGSGDTLQGAEITIEQV 183 (528)
Q Consensus 159 ~~~~v~v~d~~g~p~~~a~v~v~~~ 183 (528)
-.++.+|+|.+|+||+||.|.|=|.
T Consensus 37 l~l~G~V~D~~g~Pi~gA~VeiWqa 61 (185)
T cd03463 37 ITLEGRVYDGDGAPVPDAMLEIWQA 61 (185)
T ss_pred EEEEEEEECCCCCCCCCCEEEEEcC
Confidence 3567788999999999999998774
No 168
>PF02383 Syja_N: SacI homology domain; InterPro: IPR002013 Synaptic vesicles are recycled with remarkable speed and precision in nerve terminals. A major recycling pathway involves clathrin-mediated endocytosis at endocytic zones located around sites of release. Different 'accessory' proteins linked to this pathway have been shown to alter the shape and composition of lipid membranes, to modify membrane-coat protein interactions, and to influence actin polymerisation. These include the GTPase dynamin, the lysophosphatidic acid acyl transferase endophilin, and the phosphoinositide phosphatase synaptojanin []. The recessive suppressor of secretory defect in yeast Golgi and yeast actin function belongs to this family. This protein may be involved in the coordination of the activities of the secretory pathway and the actin cytoskeleton. Human synaptojanin which may be localised on coated endocytic intermediates in nerve terminals also belongs to this family.; GO: 0042578 phosphoric ester hydrolase activity; PDB: 3LWT_X.
Probab=27.16 E-value=1.8e+02 Score=29.81 Aligned_cols=49 Identities=20% Similarity=0.453 Sum_probs=29.2
Q ss_pred ceEEEee-eeeCCCCCCcccccC----C--ChHHHHHHHHHHHHHHHHHccCceeEEEee
Q 035723 249 LIARGHN-IFWEDPKYTPAWVRN----L--TGPALQSAVNSRIQSLMNKYKEEFIHWDVS 301 (528)
Q Consensus 249 i~vrGH~-L~W~~~~~~P~W~~~----~--~~~~~~~~~~~~I~~v~~rY~g~v~~WDVv 301 (528)
+.+||-+ |+|.. .|+.-.. + +.++-..++.+|...+.++| |.|..-+.+
T Consensus 216 vqiRGSVPl~W~Q---~~~~~~~p~i~i~~~~~~~~~af~kHf~~L~~~Y-~~i~~VNLl 271 (319)
T PF02383_consen 216 VQIRGSVPLFWSQ---PPNLKYKPPIKISRSSEENQPAFKKHFDELLKRY-GPIIIVNLL 271 (319)
T ss_dssp EEEEE---SBS--------SSS----------HHHHHHHHHHHHHHHHHH-SEEEEEEE-
T ss_pred eEecCCCCceeEc---CCCCCCCCCeEEEeccchhHHHHHHHHHHHHHhc-CceEEEEcc
Confidence 4578864 66753 3333211 1 34567899999999999999 788877777
No 169
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=26.78 E-value=3e+02 Score=29.09 Aligned_cols=129 Identities=16% Similarity=0.075 Sum_probs=72.9
Q ss_pred ccChHHHHHHHHHHHhhCCCcEEEeecCCcccCCCCcchhHHHHHHHHHHHHhCCc---eeeEEeeec------cCCCC-
Q 035723 313 RLGHDATLHFYETAHQSDPLATLFMNEFNVVETCSDENSTVDRYISRLRELKRGGV---LMDGIGLES------HFTVP- 382 (528)
Q Consensus 313 ~~G~d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~v~~l~~~G~---~iDgIG~Q~------H~~~p- 382 (528)
..+.+|....|+.+|+..|++- +..++..+-..-.+.....+.+.+++|+++|. |.-|-=+.. |. .|
T Consensus 119 ~~~~~y~~~~~~~ik~~~p~~~--i~a~s~~ei~~~~~~~~~s~~E~l~~Lk~aGldsmpg~~aeil~e~vr~~~~-p~K 195 (370)
T COG1060 119 ELSLEYYEELFRTIKEEFPDLH--IHALSAGEILFLAREGGLSYEEVLKRLKEAGLDSMPGGGAEILSEEVRKIHC-PPK 195 (370)
T ss_pred CcchHHHHHHHHHHHHhCcchh--hcccCHHHhHHHHhccCCCHHHHHHHHHHcCCCcCcCcceeechHHHHHhhC-CCC
Confidence 3444699999999999999532 33333211000000001224555678888873 211111111 22 22
Q ss_pred -CHHHHHHHHHHHHhCCCCEEEEeeecCCCCChhHHHHHHHHHHHHHhcCCCeeEEEEEeeecC
Q 035723 383 -NLPLMRAILDKLATLNLPIWLTEVDISGKLDKETQAVYLEQVLREGFSHPSVNGIMLWTALHP 445 (528)
Q Consensus 383 -~~~~i~~~L~~~a~~glpI~iTE~dv~~~~~~~~QA~~~~~~~~~~~s~p~v~gi~~Wg~~d~ 445 (528)
+.+.-.+.+++..++|+|--.|=+=-.. .+.+..++.+..+-.+=-..+....|+.|.|.-.
T Consensus 196 ~~~~~wle~~~~Ah~lGI~~tatml~Gh~-E~~ed~~~hl~~ir~lQ~~~gg~~~fI~~~f~p~ 258 (370)
T COG1060 196 KSPEEWLEIHERAHRLGIPTTATMLLGHV-ETREDRIDHLEHIRDLQDETGGFQEFIPLRFRPE 258 (370)
T ss_pred CCHHHHHHHHHHHHHcCCCccceeEEEec-CCHHHHHHHHHHHHHHHHHhCCcEEEEcccccCC
Confidence 5666778888889999986555332222 2455556666555554455678999999999743
No 170
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=26.65 E-value=3.2e+02 Score=26.00 Aligned_cols=16 Identities=13% Similarity=0.453 Sum_probs=13.6
Q ss_pred CCCEEEEEEEEEEccC
Q 035723 56 PGTIYCFSIWLKIEGA 71 (528)
Q Consensus 56 ~G~~Y~vSawVk~~~g 71 (528)
.=...++++|+|....
T Consensus 29 ~l~~fTvc~W~k~~~~ 44 (206)
T smart00159 29 PLQAFTVCLWFYSDLS 44 (206)
T ss_pred ChhHEEEEEEEEecCC
Confidence 6678999999999875
No 171
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=26.21 E-value=96 Score=32.24 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhCCceeeEEeeeccCCC--------C-CHHHH--HHHHHHHHhCCCCEEEE
Q 035723 353 VDRYISRLRELKRGGVLMDGIGLESHFTV--------P-NLPLM--RAILDKLATLNLPIWLT 404 (528)
Q Consensus 353 ~~~~~~~v~~l~~~G~~iDgIG~Q~H~~~--------p-~~~~i--~~~L~~~a~~glpI~iT 404 (528)
.+..++.++.++++++|+|+|.+..+... + .-++. .++++.|.+.|+.+-+.
T Consensus 23 ~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~ 85 (339)
T cd06602 23 VDEVKEVVENMRAAGIPLDVQWNDIDYMDRRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPI 85 (339)
T ss_pred HHHHHHHHHHHHHhCCCcceEEECcccccCccceecccccCCCccHHHHHHHHHHCCCEEEEE
Confidence 45678889999999999999988765421 0 11233 67778888888876554
No 172
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=26.14 E-value=97 Score=32.11 Aligned_cols=31 Identities=10% Similarity=0.126 Sum_probs=24.6
Q ss_pred CCCccCcchHHHHHHHHHhcCceEE------Eeeeee
Q 035723 228 EQGKINYTIADQMMEFVRSNQLIAR------GHNIFW 258 (528)
Q Consensus 228 ~~G~~~~~~~D~~v~~a~~~gi~vr------GH~L~W 258 (528)
..|.|+-+...+++++|+++||.|. ||...|
T Consensus 68 ~~~~YT~~di~elv~yA~~rgI~vIPEiD~PGH~~a~ 104 (329)
T cd06568 68 PGGYYTQEDYKDIVAYAAERHITVVPEIDMPGHTNAA 104 (329)
T ss_pred CCCcCCHHHHHHHHHHHHHcCCEEEEecCCcHHHHHH
Confidence 4566777778899999999999876 776554
No 173
>TIGR03711 acc_sec_asp3 accessory Sec system protein Asp3. This protein is designated Asp3 because, along with SecY2, SecA2, and other proteins it is part of the accessory Sec system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=25.98 E-value=4.9e+02 Score=23.41 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=35.1
Q ss_pred EEeCCCEEEEEEEEEEccCCCcEEEEEEEEeCCeeEEeeeEEEeCCCEEEEEeEEEecCCC
Q 035723 53 NLTPGTIYCFSIWLKIEGANSAHVRASLKTENSVYNCVGSAAAKQGCWSFLKGGFVLDSPS 113 (528)
Q Consensus 53 ~l~~G~~Y~vSawVk~~~g~~~~~~vt~~~~~g~y~~~~~~~v~~~~Wt~l~g~~t~~~~~ 113 (528)
.|++|++|.++.-+......+.-++|+|-... ...++..+..+ .+..|+.|..+
T Consensus 60 lLk~g~~Y~i~~n~~~~P~~s~~~ki~F~dr~--~~ei~~~i~~~-----~~~~F~yP~~a 113 (135)
T TIGR03711 60 LLKRGQTYKLSLNADASPEGSVYLKITFFDRQ--GEEIGTEIEKD-----DSIIFIYPDEA 113 (135)
T ss_pred EEcCCCEEEEEEeeeeCCCceEEEEEEEeccC--CceeceEEEec-----CceEEECCCcc
Confidence 69999999999999988777777888876322 23344433332 23445555444
No 174
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=25.70 E-value=1.3e+02 Score=26.27 Aligned_cols=38 Identities=8% Similarity=-0.036 Sum_probs=30.7
Q ss_pred EEEEeEEEecCCCCeeEEEEEcCCCCcceEEEeccccCccc
Q 035723 101 SFLKGGFVLDSPSNLSILFFQNSDDRDINIAVASASLQPFT 141 (528)
Q Consensus 101 t~l~g~~t~~~~~~~~~ly~E~~~~~~~~f~vDd~~l~~~~ 141 (528)
.++.|.|+++.++ ..++++.+ +.+..++||+-.+....
T Consensus 48 ~~~~G~~~~~~~G-~y~f~~~~--~d~~~l~idg~~vid~~ 85 (145)
T PF07691_consen 48 VRWTGYFKPPETG-TYTFSLTS--DDGARLWIDGKLVIDNW 85 (145)
T ss_dssp EEEEEEEEESSSE-EEEEEEEE--SSEEEEEETTEEEEECS
T ss_pred EEEEEEEecccCc-eEEEEEEe--cccEEEEECCEEEEcCC
Confidence 4789999999888 67888886 57899999998886544
No 175
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=25.53 E-value=6.7e+02 Score=24.82 Aligned_cols=22 Identities=14% Similarity=0.373 Sum_probs=14.9
Q ss_pred CCccCcchHHHHHHHHHhcCce
Q 035723 229 QGKINYTIADQMMEFVRSNQLI 250 (528)
Q Consensus 229 ~G~~~~~~~D~~v~~a~~~gi~ 250 (528)
.|+.|++...++++++.++|+.
T Consensus 12 dg~iD~~~~~~~i~~l~~~Gv~ 33 (281)
T cd00408 12 DGEVDLDALRRLVEFLIEAGVD 33 (281)
T ss_pred CCCcCHHHHHHHHHHHHHcCCC
Confidence 4567777777777777776543
No 176
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=25.37 E-value=80 Score=28.57 Aligned_cols=27 Identities=26% Similarity=0.236 Sum_probs=22.6
Q ss_pred ceEEEEEeCCCCCccCCcceeeeeecC
Q 035723 159 RAVTIHAADGSGDTLQGAEITIEQVSK 185 (528)
Q Consensus 159 ~~~~v~v~d~~g~p~~~a~v~v~~~~~ 185 (528)
-.++.+|+|.+|.|+++|.|.|-|...
T Consensus 12 l~l~G~V~D~~g~pv~~A~VeiW~~d~ 38 (146)
T cd00421 12 LTLTGTVLDGDGCPVPDALVEIWQADA 38 (146)
T ss_pred EEEEEEEECCCCCCCCCcEEEEEecCC
Confidence 367789999999999999999887543
No 177
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=24.98 E-value=4.4e+02 Score=29.83 Aligned_cols=83 Identities=14% Similarity=0.145 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhhCCCcEEEeecCCccc--CCC---CcchhHHHHHHHHHHHHhCCceeeEEeeeccCCCCCHHHHHHHH
Q 035723 317 DATLHFYETAHQSDPLATLFMNEFNVVE--TCS---DENSTVDRYISRLRELKRGGVLMDGIGLESHFTVPNLPLMRAIL 391 (528)
Q Consensus 317 d~~~~af~~Ar~~dP~a~L~~Ndy~~~~--~~~---~~~~~~~~~~~~v~~l~~~G~~iDgIG~Q~H~~~p~~~~i~~~L 391 (528)
++...|.+.||++.-.-.++..+.+... .+. +.......|...++.|.+.| +|.|.+.. .|+..+.+..+
T Consensus 83 ~l~~~av~lAr~a~~~~~~VagsiGP~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g--vD~l~~ET---~~~~~Ea~a~~ 157 (612)
T PRK08645 83 EINRAAVRLAREAAGDDVYVAGTIGPIGGRGPLGDISLEEIRREFREQIDALLEEG--VDGLLLET---FYDLEELLLAL 157 (612)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC--CCEEEEEc---cCCHHHHHHHH
Confidence 5667888888877422133333332211 110 11122344556677776766 67776532 36777888888
Q ss_pred HHHHhCC-CCEEEE
Q 035723 392 DKLATLN-LPIWLT 404 (528)
Q Consensus 392 ~~~a~~g-lpI~iT 404 (528)
+.+.+.+ +|+|++
T Consensus 158 ~a~~~~~~~p~~~S 171 (612)
T PRK08645 158 EAAREKTDLPIIAQ 171 (612)
T ss_pred HHHHHhCCCcEEEE
Confidence 8777665 999987
No 178
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=24.92 E-value=79 Score=30.22 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCCccCCcceeeeeec
Q 035723 160 AVTIHAADGSGDTLQGAEITIEQVS 184 (528)
Q Consensus 160 ~~~v~v~d~~g~p~~~a~v~v~~~~ 184 (528)
-++.+|+|.+|+||+||.|.|=|..
T Consensus 41 ~l~G~V~D~~g~Pv~~A~VeiWqad 65 (193)
T TIGR02423 41 RLEGRVLDGDGHPVPDALIEIWQAD 65 (193)
T ss_pred EEEEEEECCCCCCCCCCEEEEEccC
Confidence 5677889999999999999997743
No 179
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=24.81 E-value=7.1e+02 Score=24.92 Aligned_cols=113 Identities=12% Similarity=0.131 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHH--ccCceeEEEeecccccccccccccChHHHHHHHHHHHhh-CCCcEEEeecCCcccCCCCcchhH
Q 035723 277 QSAVNSRIQSLMNK--YKEEFIHWDVSNEMLHFDFYEQRLGHDATLHFYETAHQS-DPLATLFMNEFNVVETCSDENSTV 353 (528)
Q Consensus 277 ~~~~~~~I~~v~~r--Y~g~v~~WDVvNE~~~~~~~~~~~G~d~~~~af~~Ar~~-dP~a~L~~Ndy~~~~~~~~~~~~~ 353 (528)
.+.++++|+.+++. ..|-+ +|= ..+.+. .+..+--...++.+.++ ...+.++.+--.. ..
T Consensus 20 ~~~~~~~i~~l~~~~Gv~gi~-----~~G--stGE~~-~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~---------~~ 82 (288)
T cd00954 20 EDVLRAIVDYLIEKQGVDGLY-----VNG--STGEGF-LLSVEERKQIAEIVAEAAKGKVTLIAHVGSL---------NL 82 (288)
T ss_pred HHHHHHHHHHHHhcCCCCEEE-----ECc--CCcCcc-cCCHHHHHHHHHHHHHHhCCCCeEEeccCCC---------CH
Confidence 45677777777764 33321 222 112222 33344444555555544 4457777753111 12
Q ss_pred HHHHHHHHHHHhCCceeeEEeeec-cCCCCCHHHHHHHHHHHHh-C-CCCEEEEeeecCC
Q 035723 354 DRYISRLRELKRGGVLMDGIGLES-HFTVPNLPLMRAILDKLAT-L-NLPIWLTEVDISG 410 (528)
Q Consensus 354 ~~~~~~v~~l~~~G~~iDgIG~Q~-H~~~p~~~~i~~~L~~~a~-~-glpI~iTE~dv~~ 410 (528)
..-+++++...+.| +|++=+-+ ++..++.+++.+.++.+++ . ++||.| ++++.
T Consensus 83 ~~ai~~a~~a~~~G--ad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~i--Yn~P~ 138 (288)
T cd00954 83 KESQELAKHAEELG--YDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMII--YHIPA 138 (288)
T ss_pred HHHHHHHHHHHHcC--CCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEE--EeCcc
Confidence 34466777777777 57776544 4444677788888888764 6 799999 56654
No 180
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=24.78 E-value=3e+02 Score=29.28 Aligned_cols=76 Identities=12% Similarity=0.209 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhCCceeeEEeeeccCCC-CCHHHHHHHHHHHHhCCCCEEEEeeecCCCCChhHHHHHHHHHHHHHhcC
Q 035723 353 VDRYISRLRELKRGGVLMDGIGLESHFTV-PNLPLMRAILDKLATLNLPIWLTEVDISGKLDKETQAVYLEQVLREGFSH 431 (528)
Q Consensus 353 ~~~~~~~v~~l~~~G~~iDgIG~Q~H~~~-p~~~~i~~~L~~~a~~glpI~iTE~dv~~~~~~~~QA~~~~~~~~~~~s~ 431 (528)
..++.+-|+..++.| |||..+-..... -....+..+++.-...|..|.|+ +|+... .....+.+..++.....|
T Consensus 16 ~~dw~~di~~A~~~G--IDgFaLNig~~d~~~~~~l~~a~~AA~~~gFKlf~S-fD~~~~--~~~~~~~~~~~i~~y~~~ 90 (386)
T PF03659_consen 16 QEDWEADIRLAQAAG--IDGFALNIGSSDSWQPDQLADAYQAAEAVGFKLFFS-FDMNSL--GPWSQDELIALIKKYAGH 90 (386)
T ss_pred HHHHHHHHHHHHHcC--CCEEEEecccCCcccHHHHHHHHHHHHhcCCEEEEE-ecccCC--CCCCHHHHHHHHHHHcCC
Confidence 455665556555555 798888766322 24556777777767788888887 787642 111225667777777777
Q ss_pred CC
Q 035723 432 PS 433 (528)
Q Consensus 432 p~ 433 (528)
|+
T Consensus 91 pa 92 (386)
T PF03659_consen 91 PA 92 (386)
T ss_pred hh
Confidence 75
No 181
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=24.72 E-value=7.1e+02 Score=24.89 Aligned_cols=19 Identities=11% Similarity=0.569 Sum_probs=9.6
Q ss_pred CccCcchHHHHHHHHHhcC
Q 035723 230 GKINYTIADQMMEFVRSNQ 248 (528)
Q Consensus 230 G~~~~~~~D~~v~~a~~~g 248 (528)
|+.|++...++++++.+.|
T Consensus 17 g~iD~~~l~~~i~~l~~~G 35 (292)
T PRK03170 17 GSVDFAALRKLVDYLIANG 35 (292)
T ss_pred CCcCHHHHHHHHHHHHHcC
Confidence 4445555555555555544
No 182
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=24.19 E-value=1.1e+02 Score=31.24 Aligned_cols=200 Identities=10% Similarity=0.044 Sum_probs=98.1
Q ss_pred CCccCcchHHHHHHHHHhcCceEE------EeeeeeCCC---CCCcc-----cccCCChHHHHHHHHHHHHHHHHHccCc
Q 035723 229 QGKINYTIADQMMEFVRSNQLIAR------GHNIFWEDP---KYTPA-----WVRNLTGPALQSAVNSRIQSLMNKYKEE 294 (528)
Q Consensus 229 ~G~~~~~~~D~~v~~a~~~gi~vr------GH~L~W~~~---~~~P~-----W~~~~~~~~~~~~~~~~I~~v~~rY~g~ 294 (528)
+|.|+-+...+++++|+++||.|. ||.-.|-.. ....+ .....+.++..+.+++-+++++.-++.+
T Consensus 54 ~~~yT~~ei~ei~~yA~~~gI~vIPeid~pGH~~~~l~~~~~~~l~~~~~~~~~l~~~~~~t~~fi~~li~ev~~~f~s~ 133 (301)
T cd06565 54 RGAYTKEEIREIDDYAAELGIEVIPLIQTLGHLEFILKHPEFRHLREVDDPPQTLCPGEPKTYDFIEEMIRQVLELHPSK 133 (301)
T ss_pred CCCcCHHHHHHHHHHHHHcCCEEEecCCCHHHHHHHHhCcccccccccCCCCCccCCCChhHHHHHHHHHHHHHHhCCCC
Confidence 667777788899999999999986 787555321 00111 1112234567778888888888888754
Q ss_pred eeEE--Eeeccccccccccc---ccC-----hHHHHHHHHHHHhhCCCcEEEeecCCcccCCCCcchhHHHHHHHHHHHH
Q 035723 295 FIHW--DVSNEMLHFDFYEQ---RLG-----HDATLHFYETAHQSDPLATLFMNEFNVVETCSDENSTVDRYISRLRELK 364 (528)
Q Consensus 295 v~~W--DVvNE~~~~~~~~~---~~G-----~d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~v~~l~ 364 (528)
..+. |=++..-. ..+.+ ..+ .+++....+.+++..+.. ++=||.-. ..+. .. ..
T Consensus 134 ~~HIG~DE~~~~g~-~~~~~~~~~~~~~~l~~~~~~~v~~~v~~~g~~~-~~W~D~~~-~~~~----~~-~~-------- 197 (301)
T cd06565 134 YIHIGMDEAYDLGR-GRSLRKHGNLGRGELYLEHLKKVLKIIKKRGPKP-MMWDDMLR-KLSI----EP-EA-------- 197 (301)
T ss_pred eEEECCCcccccCC-CHHHHHhcCCCHHHHHHHHHHHHHHHHHHcCCEE-EEEhHHhc-CCCC----Ch-HH--------
Confidence 3221 11111100 00111 111 256778888888887743 34444211 0000 00 00
Q ss_pred hCCceeeEEeeeccCCC-CCHHHHHHHHHHHHhCCCCEEEEeeecCCC---CChhHHHHHHHHHHHHHhcCCCeeEEEEE
Q 035723 365 RGGVLMDGIGLESHFTV-PNLPLMRAILDKLATLNLPIWLTEVDISGK---LDKETQAVYLEQVLREGFSHPSVNGIMLW 440 (528)
Q Consensus 365 ~~G~~iDgIG~Q~H~~~-p~~~~i~~~L~~~a~~glpI~iTE~dv~~~---~~~~~QA~~~~~~~~~~~s~p~v~gi~~W 440 (528)
....+=|.+ +| ++.. ++...-...+..+...|.++.+.=-...-. ..-..--+-....++.+.++ .+.||.+=
T Consensus 198 ~~~l~~~v~-~~-~W~y~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~n~~~~~~~~~~~-~~~G~~~T 274 (301)
T cd06565 198 LSGLPKLVT-PV-VWDYYADLDEHDRPIGLWKKYGSVFAVAWGASAWKGATPPNDKHLENIKSWLKAAKKN-GVQGILLT 274 (301)
T ss_pred HhCCCCCeE-EE-EecCcCCcchhhHhHHHHHHhCCCceEeeeechhccCCCCHHHHHHHHHHHHHHHHHC-CCCEEEEE
Confidence 011222222 11 2221 211111456666777777766653222110 11222234445666666665 68887554
Q ss_pred eeecCCC
Q 035723 441 TALHPNG 447 (528)
Q Consensus 441 g~~d~~~ 447 (528)
+.-|..+
T Consensus 275 ~W~d~g~ 281 (301)
T cd06565 275 GWGDYGH 281 (301)
T ss_pred ecCCCCC
Confidence 4334433
No 183
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=23.94 E-value=1.6e+02 Score=31.70 Aligned_cols=80 Identities=15% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHHHHHH-HhcCceEEEeeeeeCCCCCCcccccCCChHH---HHHHHHHHHHHHHHHccC-ceeEEEeecccccccccc
Q 035723 237 ADQMMEFV-RSNQLIARGHNIFWEDPKYTPAWVRNLTGPA---LQSAVNSRIQSLMNKYKE-EFIHWDVSNEMLHFDFYE 311 (528)
Q Consensus 237 ~D~~v~~a-~~~gi~vrGH~L~W~~~~~~P~W~~~~~~~~---~~~~~~~~I~~v~~rY~g-~v~~WDVvNE~~~~~~~~ 311 (528)
+|.+.+|| .....-+|=.+++|+. .=.=--.-.|++ |.+.|.+|++.+++-|.| ||+ ..-.=|+|
T Consensus 338 ~dpl~dFA~~~S~~YLRREvIvWGD---cVKLRYG~~peDsP~LW~~M~~Yt~~~A~iF~G~RiD--NCHSTPlh----- 407 (423)
T PF14701_consen 338 ADPLVDFASPDSRAYLRREVIVWGD---CVKLRYGSKPEDSPFLWKHMKEYTELMAKIFHGFRID--NCHSTPLH----- 407 (423)
T ss_pred CchhhhhcCCcccceEEEEEEecCc---eeeecCCCCCCCCHHHHHHHHHHHHHHHHhcCeeeee--cCCCCcHH-----
Q ss_pred cccChHHHHHHHHHHHhhCCC
Q 035723 312 QRLGHDATLHFYETAHQSDPL 332 (528)
Q Consensus 312 ~~~G~d~~~~af~~Ar~~dP~ 332 (528)
..+.....||++.|+
T Consensus 408 ------VaeylLd~AR~v~Pn 422 (423)
T PF14701_consen 408 ------VAEYLLDAARKVNPN 422 (423)
T ss_pred ------HHHHHHHHHHhhCCC
No 184
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region [].; GO: 0003824 catalytic activity; PDB: 2OO0_A 2ON3_A 1D7K_B 3VAB_A 2J66_A 3C5Q_A 2QGH_A 1TWI_B 1TUF_A 3N2O_A ....
Probab=23.88 E-value=1.1e+02 Score=30.03 Aligned_cols=71 Identities=24% Similarity=0.313 Sum_probs=39.0
Q ss_pred HHHHHHHHHhCCceeeEEeeeccCCCC--CHHH-------HHHHHHHHH-hCCCC-EEEEeeecCCC--------CChhH
Q 035723 356 YISRLRELKRGGVLMDGIGLESHFTVP--NLPL-------MRAILDKLA-TLNLP-IWLTEVDISGK--------LDKET 416 (528)
Q Consensus 356 ~~~~v~~l~~~G~~iDgIG~Q~H~~~p--~~~~-------i~~~L~~~a-~~glp-I~iTE~dv~~~--------~~~~~ 416 (528)
..+.++.+.+.+ +.-+|+|.|+++. +.+. +.+.++++. .+|.+ +. .+|+... .+.+.
T Consensus 143 ~~~~l~~~~~~~--l~l~GlH~H~gS~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~--~idiGGG~~~~y~~~~~~~~ 218 (251)
T PF02784_consen 143 AEEALERAKELG--LRLVGLHFHVGSQILDAEAFRQAIERLLDLAEELKEELGFEDLE--FIDIGGGFGVPYDDEYDLEE 218 (251)
T ss_dssp HHHHHHHHHHTT--EEEEEEEE-HCSSBSSCHHHHHHHHHHHHHHHHHHHHTTTTT-S--EEEEESSB-SSSSSSSCHHH
T ss_pred HHHHHHhhccce--EEEEEeeeeeccCCcchHHHHHHHHHHHHHHhhhcccccccccc--EEEeeCCCCCCCcccccchh
Confidence 455566666776 8999999999752 3333 333334443 55654 43 3444431 23445
Q ss_pred HHHHHHHHHHHHhc
Q 035723 417 QAVYLEQVLREGFS 430 (528)
Q Consensus 417 QA~~~~~~~~~~~s 430 (528)
-++.+...+...+.
T Consensus 219 ~~~~i~~~~~~~~~ 232 (251)
T PF02784_consen 219 YAEVIREALKEYFE 232 (251)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh
Confidence 56666677766654
No 185
>PRK09358 adenosine deaminase; Provisional
Probab=23.87 E-value=7.9e+02 Score=25.11 Aligned_cols=122 Identities=11% Similarity=0.025 Sum_probs=56.8
Q ss_pred CChHHHHHHHHHHHHHHHHHccCceeEEEeecccccccccccccC-hHHHH---HHHHHHH-hhCCCcEEEeecCCcccC
Q 035723 271 LTGPALQSAVNSRIQSLMNKYKEEFIHWDVSNEMLHFDFYEQRLG-HDATL---HFYETAH-QSDPLATLFMNEFNVVET 345 (528)
Q Consensus 271 ~~~~~~~~~~~~~I~~v~~rY~g~v~~WDVvNE~~~~~~~~~~~G-~d~~~---~af~~Ar-~~dP~a~L~~Ndy~~~~~ 345 (528)
.+++.++......+.+.+. .-|.+-|+-..|.... ...+. +++++ .+.+.|+ +..-.+++++.-... .
T Consensus 74 ~t~ed~~~~~~~~~~e~~~---~Gvty~E~~~~p~~~~--~~gl~~~~~~~a~~~~~~~a~~~~gi~~~li~~~~r~--~ 146 (340)
T PRK09358 74 QTEEDLRRLAFEYLEDAAA---DGVVYAEIRFDPQLHT--ERGLPLEEVVEAVLDGLRAAEAEFGISVRLILCFMRH--F 146 (340)
T ss_pred CCHHHHHHHHHHHHHHHHH---cCCEEEEEEeChhhhh--hcCCCHHHHHHHHHHHHHHHHHhcCceEEEEEEecCC--C
Confidence 3556666666666555544 3466556554442100 01121 24443 3333333 234456666542211 1
Q ss_pred CCCcchhHHHHHHHHHHHHh--CCceeeEEeeec-cCCCCCHHHHHHHHHHHHhCCCCEE--EEee
Q 035723 346 CSDENSTVDRYISRLRELKR--GGVLMDGIGLES-HFTVPNLPLMRAILDKLATLNLPIW--LTEV 406 (528)
Q Consensus 346 ~~~~~~~~~~~~~~v~~l~~--~G~~iDgIG~Q~-H~~~p~~~~i~~~L~~~a~~glpI~--iTE~ 406 (528)
+ .....+.++.+++ .+-.+-|+|+-+ +.. .+.+.+...++...+.|+|+. +-|.
T Consensus 147 ~------~~~~~~~~~~~~~~~~~~~vvg~~l~g~e~~-~~~~~~~~~~~~A~~~g~~~~~H~~E~ 205 (340)
T PRK09358 147 G------EEAAARELEALAARYRDDGVVGFDLAGDELG-FPPSKFARAFDRARDAGLRLTAHAGEA 205 (340)
T ss_pred C------HHHHHHHHHHHHHHhcCCcEEEEeCCCcCCC-CCHHHHHHHHHHHHHCCCCeEEcCCCC
Confidence 0 1122333444443 343466666642 222 234567777777777888754 4553
No 186
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=23.73 E-value=1.8e+02 Score=30.17 Aligned_cols=125 Identities=15% Similarity=0.166 Sum_probs=59.0
Q ss_pred hcCeeccCCcccCcccccCCCcc---CcchHHHHHHHHHhcCceEE-----Eeee----------------eeCCCCCCc
Q 035723 210 RFNAAVFENELKWYATEPEQGKI---NYTIADQMMEFVRSNQLIAR-----GHNI----------------FWEDPKYTP 265 (528)
Q Consensus 210 ~Fn~vt~eN~~kW~~~Ep~~G~~---~~~~~D~~v~~a~~~gi~vr-----GH~L----------------~W~~~~~~P 265 (528)
++.+-+..|--.|+- |-|-.+ .++-..++++-.++-||... ||+- .|..- ..|
T Consensus 69 ~laW~rMgNl~gwgG--PLp~~w~~~q~~Lq~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f-~~~ 145 (333)
T PF05089_consen 69 FLAWWRMGNLQGWGG--PLPQSWIDQQAELQKKILDRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGF-CRP 145 (333)
T ss_dssp -HHHHHTTS--STT------TTHHHHHHHHHHHHHHHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETTE-E--
T ss_pred HHHHHHhCCcccCCC--CCCHHHHHHHHHHHHHHHHHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCC-CCC
Confidence 344445555445553 222222 12234678888999999754 6643 12110 123
Q ss_pred ccccCCChHHHHHHHHHHHHHHHHHccC-ceeEEEeecccccccccccccChHHHHHHHHHHHhhCCCcEEEeec
Q 035723 266 AWVRNLTGPALQSAVNSRIQSLMNKYKE-EFIHWDVSNEMLHFDFYEQRLGHDATLHFYETAHQSDPLATLFMNE 339 (528)
Q Consensus 266 ~W~~~~~~~~~~~~~~~~I~~v~~rY~g-~v~~WDVvNE~~~~~~~~~~~G~d~~~~af~~Ar~~dP~a~L~~Nd 339 (528)
.|+.. +++-..+.=+.|+++..+.|+. .++.-|-.||....+ .....=.+..+..|+..+++||+|.-++=.
T Consensus 146 ~~L~P-~dplF~~i~~~F~~~q~~~yG~~~~Y~~D~FnE~~p~~-~~~~~l~~~s~~v~~am~~~dp~AvWvmQg 218 (333)
T PF05089_consen 146 YFLDP-TDPLFAEIAKLFYEEQIKLYGTDHIYAADPFNEGGPPS-GDPEYLANVSKAVYKAMQAADPDAVWVMQG 218 (333)
T ss_dssp EEE-S-S--HHHHHHHHHHHHHHHHH---SEEE--TTTTS---T-TS---HHHHHHHHHHHHHHH-TT-EEEEEE
T ss_pred ceeCC-CCchHHHHHHHHHHHHHHhcCCCceeCCCccCCCCCCC-CchHHHHHHHHHHHHHHHhhCCCcEEEEcc
Confidence 33333 2333455556778888888873 789999999975432 211111234466788888999998876654
No 187
>PRK05406 LamB/YcsF family protein; Provisional
Probab=23.54 E-value=4.3e+02 Score=26.29 Aligned_cols=92 Identities=15% Similarity=0.121 Sum_probs=60.4
Q ss_pred chHHHHHHHHHhcCceEEEeeeeeCCCCCCcccc------cCCChHHHHHHHHHHHHH---HHHHccCceeEEEeecccc
Q 035723 235 TIADQMMEFVRSNQLIARGHNIFWEDPKYTPAWV------RNLTGPALQSAVNSRIQS---LMNKYKEEFIHWDVSNEML 305 (528)
Q Consensus 235 ~~~D~~v~~a~~~gi~vrGH~L~W~~~~~~P~W~------~~~~~~~~~~~~~~~I~~---v~~rY~g~v~~WDVvNE~~ 305 (528)
..-++.++.|++||+.+-.|+- .|+-. -.++++++++.+.--|.. ++...+.++.+-- |
T Consensus 44 ~~M~~tv~lA~~~gV~IGAHPg-------ypD~~gFGRR~m~~s~~el~~~v~yQigAL~~~a~~~g~~l~hVK----P- 111 (246)
T PRK05406 44 AVMRRTVRLAKENGVAIGAHPG-------YPDLEGFGRRNMDLSPEELYALVLYQIGALQAIARAAGGRVSHVK----P- 111 (246)
T ss_pred HHHHHHHHHHHHcCCeEccCCC-------CCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeeEEeC----c-
Confidence 3467889999999999999984 45432 136788877776665544 4556666776543 2
Q ss_pred ccccccccc-ChHHHHHHHHHHHhhCCCcEEEee
Q 035723 306 HFDFYEQRL-GHDATLHFYETAHQSDPLATLFMN 338 (528)
Q Consensus 306 ~~~~~~~~~-G~d~~~~af~~Ar~~dP~a~L~~N 338 (528)
|+-.+-... .++......+.+++.+|+..|+..
T Consensus 112 HGALYN~~~~d~~~a~av~~ai~~~~~~l~l~~~ 145 (246)
T PRK05406 112 HGALYNMAAKDPALADAVAEAVAAVDPSLILVGL 145 (246)
T ss_pred cHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEec
Confidence 333222222 245667778888999999777653
No 188
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=23.48 E-value=1.3e+02 Score=30.99 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhCCceeeEEeee
Q 035723 353 VDRYISRLRELKRGGVLMDGIGLE 376 (528)
Q Consensus 353 ~~~~~~~v~~l~~~G~~iDgIG~Q 376 (528)
.+..++.++.+.++|+|+|+|-++
T Consensus 22 ~~~v~~~~~~~~~~~iP~d~i~ld 45 (317)
T cd06594 22 TDKVLEALEKARAAGVKVAGLWLQ 45 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEc
Confidence 345667777777788888887665
No 189
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=23.33 E-value=86 Score=31.99 Aligned_cols=32 Identities=16% Similarity=0.359 Sum_probs=25.3
Q ss_pred cCCCccCcchHHHHHHHHHhcCceEE------Eeeeee
Q 035723 227 PEQGKINYTIADQMMEFVRSNQLIAR------GHNIFW 258 (528)
Q Consensus 227 p~~G~~~~~~~D~~v~~a~~~gi~vr------GH~L~W 258 (528)
+..|.|+-+...+++++|+++||.|- ||...|
T Consensus 64 ~~~~~yT~~di~elv~yA~~rgI~viPEiD~PGH~~a~ 101 (303)
T cd02742 64 SPGGFYTYAQLKDIIEYAAARGIEVIPEIDMPGHSTAF 101 (303)
T ss_pred CCCCeECHHHHHHHHHHHHHcCCEEEEeccchHHHHHH
Confidence 34567777888899999999999875 776554
No 190
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=23.26 E-value=2.1e+02 Score=31.00 Aligned_cols=140 Identities=15% Similarity=0.058 Sum_probs=74.3
Q ss_pred ccCcccccCCCccCcchHHHHHHHHHhcCceEE-EeeeeeCCC--CCCcccccCC--ChHHHHHHHHHHHHHHHHH--cc
Q 035723 220 LKWYATEPEQGKINYTIADQMMEFVRSNQLIAR-GHNIFWEDP--KYTPAWVRNL--TGPALQSAVNSRIQSLMNK--YK 292 (528)
Q Consensus 220 ~kW~~~Ep~~G~~~~~~~D~~v~~a~~~gi~vr-GH~L~W~~~--~~~P~W~~~~--~~~~~~~~~~~~I~~v~~r--Y~ 292 (528)
+-|.+.|..+ + -..++++||+.-|..+- .-.| ++. +..-.|+.-. +... |...+-.. ++
T Consensus 95 laW~t~EtN~--~---Gt~EF~~~~e~iGaep~~avN~--Gsrgvd~ar~~vEY~n~pggt-------ywsdlR~~~G~~ 160 (501)
T COG3534 95 LAWGTTETNE--F---GTHEFMDWCELIGAEPYIAVNL--GSRGVDEARNWVEYCNHPGGT-------YWSDLRRENGRE 160 (501)
T ss_pred cccccccccc--c---cHHHHHHHHHHhCCceEEEEec--CCccHHHHHHHHHHccCCCCC-------hhHHHHHhcCCC
Confidence 5788655543 3 24678999999998764 2222 111 0011232211 1110 01111111 11
Q ss_pred C--ceeEEEeecccccccccccccChHHHHHHHHHHHh---hCCCcEEEeecCCcccCCCCcchhHHHHHHHHHHHH-hC
Q 035723 293 E--EFIHWDVSNEMLHFDFYEQRLGHDATLHFYETAHQ---SDPLATLFMNEFNVVETCSDENSTVDRYISRLRELK-RG 366 (528)
Q Consensus 293 g--~v~~WDVvNE~~~~~~~~~~~G~d~~~~af~~Ar~---~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~v~~l~-~~ 366 (528)
. .|..|=+=||+...--+....-++|...|-+++|- .+|..++++..+.--..+ .+.+.-..++ +.
T Consensus 161 ~P~nvK~w~lGNEm~GpWq~G~~~a~EY~~~A~e~~k~~k~~d~t~e~~v~g~a~~~n~--------~~~~W~~~vl~~~ 232 (501)
T COG3534 161 EPWNVKYWGLGNEMDGPWQCGHKTAPEYGRLANEYRKYMKYFDPTIENVVCGSANGANP--------TDPNWEAVVLEEA 232 (501)
T ss_pred CCcccceEEeccccCCCcccccccCHHHHHHHHHHHHHHhhcCccccceEEeecCCCCC--------CchHHHHHHHHHH
Confidence 1 69999999998532122344557886555444443 489999999887641111 1222222333 33
Q ss_pred CceeeEEeeeccCCC
Q 035723 367 GVLMDGIGLESHFTV 381 (528)
Q Consensus 367 G~~iDgIG~Q~H~~~ 381 (528)
.-.+|+|.+|.+++.
T Consensus 233 ~e~vD~ISlH~Y~Gn 247 (501)
T COG3534 233 YERVDYISLHYYKGN 247 (501)
T ss_pred hhhcCeEEEEEecCc
Confidence 346999999999765
No 191
>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin [].
Probab=23.24 E-value=1.3e+02 Score=25.22 Aligned_cols=34 Identities=15% Similarity=0.298 Sum_probs=22.9
Q ss_pred eEEEEEeC-CCCCccCCcceeeeeecCCCceEEee
Q 035723 160 AVTIHAAD-GSGDTLQGAEITIEQVSKDFPFGSAI 193 (528)
Q Consensus 160 ~~~v~v~d-~~g~p~~~a~v~v~~~~~~F~fG~av 193 (528)
.+.|-|.+ .+|+|++|++|++...+.+=.++.+.
T Consensus 14 ~~~v~v~~L~tg~Pv~ga~V~l~~~~~~~~l~~g~ 48 (97)
T PF11974_consen 14 GLLVWVTSLSTGKPVAGAEVELYDSRNGQVLASGK 48 (97)
T ss_pred CEEEEEeeCCCCCccCCCEEEEEECCCCcEeeeee
Confidence 34555555 68999999999997633444666554
No 192
>PRK08508 biotin synthase; Provisional
Probab=22.94 E-value=3.9e+02 Score=26.84 Aligned_cols=74 Identities=15% Similarity=0.177 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHhhCCCcEEEeecCCcccCCCCcchhHHHHHHHHHHHHhCCceeeEEe--eec---cCC---C-CCHHH
Q 035723 316 HDATLHFYETAHQSDPLATLFMNEFNVVETCSDENSTVDRYISRLRELKRGGVLMDGIG--LES---HFT---V-PNLPL 386 (528)
Q Consensus 316 ~d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~v~~l~~~G~~iDgIG--~Q~---H~~---~-p~~~~ 386 (528)
-+|+.+.++.+|+..|+..+..+. +.. . .+.++.|+++|+ |.+. +.. ++. . -+..+
T Consensus 74 ~e~~~ei~~~ik~~~p~l~i~~s~-G~~--------~----~e~l~~Lk~aGl--d~~~~~lEt~~~~~~~i~~~~~~~~ 138 (279)
T PRK08508 74 LEYVAEAAKAVKKEVPGLHLIACN-GTA--------S----VEQLKELKKAGI--FSYNHNLETSKEFFPKICTTHTWEE 138 (279)
T ss_pred HHHHHHHHHHHHhhCCCcEEEecC-CCC--------C----HHHHHHHHHcCC--CEEcccccchHHHhcCCCCCCCHHH
Confidence 478999999999999988765431 111 0 344677888885 3332 221 111 1 13456
Q ss_pred HHHHHHHHHhCCCCEEEE
Q 035723 387 MRAILDKLATLNLPIWLT 404 (528)
Q Consensus 387 i~~~L~~~a~~glpI~iT 404 (528)
..+.++...+.|+++.-+
T Consensus 139 ~l~~i~~a~~~Gi~v~sg 156 (279)
T PRK08508 139 RFQTCENAKEAGLGLCSG 156 (279)
T ss_pred HHHHHHHHHHcCCeecce
Confidence 666777777888755433
No 193
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=22.80 E-value=5.7e+02 Score=26.79 Aligned_cols=124 Identities=8% Similarity=-0.117 Sum_probs=65.8
Q ss_pred HHHHHHhcCceEEEeeeeeCCCCCCccccc---CCChHHHHHHHHHHHHHHHHHccCceeEEEeecccccccccccccCh
Q 035723 240 MMEFVRSNQLIARGHNIFWEDPKYTPAWVR---NLTGPALQSAVNSRIQSLMNKYKEEFIHWDVSNEMLHFDFYEQRLGH 316 (528)
Q Consensus 240 ~v~~a~~~gi~vrGH~L~W~~~~~~P~W~~---~~~~~~~~~~~~~~I~~v~~rY~g~v~~WDVvNE~~~~~~~~~~~G~ 316 (528)
=++.|.+.|.... |..+=- .+.-.. +.+.++..+.+.+-|+..-+ .+.+|. +.-......++.....+
T Consensus 126 die~A~~~g~~~v-~i~~s~----Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~-~Gl~v~---~~is~~fg~p~~~r~~~ 196 (347)
T PLN02746 126 GFEAAIAAGAKEV-AVFASA----SESFSKSNINCSIEESLVRYREVALAAKK-HSIPVR---GYVSCVVGCPIEGPVPP 196 (347)
T ss_pred HHHHHHHcCcCEE-EEEEec----CHHHHHHHhCCCHHHHHHHHHHHHHHHHH-cCCeEE---EEEEeeecCCccCCCCH
Confidence 3566777787654 333211 121111 23556666655555554333 233331 11111111223334567
Q ss_pred HHHHHHHHHHHhhCCCcEEEeecCCcccCCCCcchhHHHHHHHHHHHHhCCceeeEEeeeccCCC
Q 035723 317 DATLHFYETAHQSDPLATLFMNEFNVVETCSDENSTVDRYISRLRELKRGGVLMDGIGLESHFTV 381 (528)
Q Consensus 317 d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~v~~l~~~G~~iDgIG~Q~H~~~ 381 (528)
+++....+.+.++..+ .+.+-|-.-+ ..+....++++.|+++ .+..-|++|+|-..
T Consensus 197 ~~l~~~~~~~~~~Gad-~I~l~DT~G~-------a~P~~v~~lv~~l~~~-~~~~~i~~H~Hnd~ 252 (347)
T PLN02746 197 SKVAYVAKELYDMGCY-EISLGDTIGV-------GTPGTVVPMLEAVMAV-VPVDKLAVHFHDTY 252 (347)
T ss_pred HHHHHHHHHHHHcCCC-EEEecCCcCC-------cCHHHHHHHHHHHHHh-CCCCeEEEEECCCC
Confidence 8998888888887654 5677763322 2356677777887764 34445899888654
No 194
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase. This subfamily includes plants and biosynthetic prokaryotic arginine decarboxylases (ADC, EC 4.1.1.19). ADC is involved in the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. It catalyzes the decarboxylation of L-arginine to agmatine, which is then hydrolyzed to putrescine by agmatinase. ADC is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Homodimer formation and the presence of both PLP and Mg2+ cofactors may be required for catalytic activity. Prokaryotic ADCs (biodegradative), which are fold type I PLP-dependent enzymes, are not included in this family.
Probab=22.80 E-value=1.5e+02 Score=31.64 Aligned_cols=55 Identities=24% Similarity=0.308 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhCCceeeEEeeeccCCCC--CHHHHH-------HHHHHHHhCCCCEEEEeeecCC
Q 035723 354 DRYISRLRELKRGGVLMDGIGLESHFTVP--NLPLMR-------AILDKLATLNLPIWLTEVDISG 410 (528)
Q Consensus 354 ~~~~~~v~~l~~~G~~iDgIG~Q~H~~~p--~~~~i~-------~~L~~~a~~glpI~iTE~dv~~ 410 (528)
+...+.++.+++.|..+.-+|+|+|+++. +.+.+. +.++.+.+.| +.+..+|+..
T Consensus 169 ~~~~~~~~~~~~~~~~l~l~GlH~H~GSq~~~~~~~~~~~~~~~~~~~~~~~~g--~~l~~iDiGG 232 (409)
T cd06830 169 SEILEVVEKLKEAGMLDRLKLLHFHIGSQITDIRRIKSALREAARIYAELRKLG--ANLRYLDIGG 232 (409)
T ss_pred HHHHHHHHHHHhcCcCCeEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHhC--CCCcEEEcCC
Confidence 45566677777777668889999999863 444333 3333344445 4466777765
No 195
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=22.67 E-value=2.8e+02 Score=27.76 Aligned_cols=54 Identities=17% Similarity=0.163 Sum_probs=40.3
Q ss_pred ccChHHHHHHHHHHHhhCCCcEEEeecCCcccCCCCcchhHHHHHHHHHHHHhCCceeeEEeeeccCC
Q 035723 313 RLGHDATLHFYETAHQSDPLATLFMNEFNVVETCSDENSTVDRYISRLRELKRGGVLMDGIGLESHFT 380 (528)
Q Consensus 313 ~~G~d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~v~~l~~~G~~iDgIG~Q~H~~ 380 (528)
..|.+|...++...++.+=.|..|+++-.+ ..+-++++++.++| .-||-|++-+
T Consensus 94 g~~~~~t~~iL~iLkk~~vkATFFv~G~~i-----------~~~p~l~k~i~~~G---heIGnHT~sH 147 (268)
T TIGR02873 94 AWGNEYLPEILQILKKHDVKATFFLEGKWV-----------KENSQLAKMIVEQG---HEIGNHAYNH 147 (268)
T ss_pred CCCcchHHHHHHHHHHCCCCEEEEeehHhh-----------hHCHHHHHHHHHCC---CEEEecCCcC
Confidence 345678999999999999899999987443 22345678888999 4688876543
No 196
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=22.54 E-value=1.2e+02 Score=31.66 Aligned_cols=63 Identities=16% Similarity=0.307 Sum_probs=40.9
Q ss_pred CCccCcchHHHHHHHHHhcCceEE------EeeeeeCCCCCCcc--------cc----------cCCChHHHHHHHHHHH
Q 035723 229 QGKINYTIADQMMEFVRSNQLIAR------GHNIFWEDPKYTPA--------WV----------RNLTGPALQSAVNSRI 284 (528)
Q Consensus 229 ~G~~~~~~~D~~v~~a~~~gi~vr------GH~L~W~~~~~~P~--------W~----------~~~~~~~~~~~~~~~I 284 (528)
.|.|+-+....++++|+++||.|. ||...|... .|. |- ...+.++..+.+++-+
T Consensus 64 ~~~YT~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~~--~p~l~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~vl 141 (348)
T cd06562 64 SEVYTPEDVKEIVEYARLRGIRVIPEIDTPGHTGSWGQG--YPELLTGCYAVWRKYCPEPPCGQLNPTNPKTYDFLKTLF 141 (348)
T ss_pred CceECHHHHHHHHHHHHHcCCEEEEeccCchhhHHHHHh--ChhhhCCCCccccccccCCCCccccCCChhHHHHHHHHH
Confidence 466777788899999999999876 898776421 121 11 0112345566666667
Q ss_pred HHHHHHccC
Q 035723 285 QSLMNKYKE 293 (528)
Q Consensus 285 ~~v~~rY~g 293 (528)
+++++-|++
T Consensus 142 ~E~~~lF~~ 150 (348)
T cd06562 142 KEVSELFPD 150 (348)
T ss_pred HHHHHhcCC
Confidence 777776654
No 197
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=22.52 E-value=6.4e+02 Score=30.86 Aligned_cols=97 Identities=10% Similarity=0.152 Sum_probs=59.5
Q ss_pred chHHHHHHHHHhcCceEEEeeeeeCC------CCCCcccccC---------------C--ChHHHHHHHHHHHHHHHHHc
Q 035723 235 TIADQMMEFVRSNQLIARGHNIFWED------PKYTPAWVRN---------------L--TGPALQSAVNSRIQSLMNKY 291 (528)
Q Consensus 235 ~~~D~~v~~a~~~gi~vrGH~L~W~~------~~~~P~W~~~---------------~--~~~~~~~~~~~~I~~v~~rY 291 (528)
....+||+-|-++||.|.--+++=|. +...|.|+.. + ..+.+++.|.+-++-.++.|
T Consensus 555 ~EfK~LV~alH~~GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ey 634 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDEF 634 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHhc
Confidence 35778999999999998644333221 1123444321 0 12356666777777777777
Q ss_pred cCceeEEEeecccccccccccccChHHHHHHHHHHHhhCCCcEEEeecCC
Q 035723 292 KEEFIHWDVSNEMLHFDFYEQRLGHDATLHFYETAHQSDPLATLFMNEFN 341 (528)
Q Consensus 292 ~g~v~~WDVvNE~~~~~~~~~~~G~d~~~~af~~Ar~~dP~a~L~~Ndy~ 341 (528)
+=.=...|++. ....+.+..+++.+++.+|++.|+--.++
T Consensus 635 ~VDGFRfDl~g----------~~d~~~~~~~~~~l~~~dP~~~liGE~W~ 674 (1111)
T TIGR02102 635 KVDGFRFDMMG----------DHDAASIEIAYKEAKAINPNIIMIGEGWR 674 (1111)
T ss_pred CCcEEEEeccc----------cCCHHHHHHHHHHHHHhCcCEEEEEeccc
Confidence 52112345442 13346778888899999999888765544
No 198
>PRK15314 outer membrane protein RatB; Provisional
Probab=22.19 E-value=1e+02 Score=38.91 Aligned_cols=47 Identities=15% Similarity=0.340 Sum_probs=32.1
Q ss_pred cccCccchhhhhhhhh---hhhhhhhcceEEEEEeCCCCCccCCcceeee
Q 035723 135 ASLQPFTDEQWRFNQQ---YIINTERKRAVTIHAADGSGDTLQGAEITIE 181 (528)
Q Consensus 135 ~~l~~~~~~~w~~~a~---~~Ie~~Rk~~~~v~v~d~~g~p~~~a~v~v~ 181 (528)
+.|.+.+.+.|..... ....+--+-.++|+|.|+.|+||+++...++
T Consensus 1010 Itle~vd~aqw~~~~~~~aaK~KkGEt~~~kVTvkDA~GnPv~~~pF~l~ 1059 (2435)
T PRK15314 1010 ITIEPVDAALWYNANSEHAVKVKKGDTLQLKVTVKDASGNPLPQAPFVLS 1059 (2435)
T ss_pred EEEeecCHHHhcccCCcceeeeecCCEEEEEEEEecCCCCcCCCCceEEe
Confidence 4567777888953222 2222333446788889999999999988775
No 199
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=22.16 E-value=1e+03 Score=26.14 Aligned_cols=91 Identities=12% Similarity=0.067 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHccCceeEEEeeccccccc----------c-------c--ccccChHHHHHHHHHHHhhCCCcEEEeecC
Q 035723 280 VNSRIQSLMNKYKEEFIHWDVSNEMLHFD----------F-------Y--EQRLGHDATLHFYETAHQSDPLATLFMNEF 340 (528)
Q Consensus 280 ~~~~I~~v~~rY~g~v~~WDVvNE~~~~~----------~-------~--~~~~G~d~~~~af~~Ar~~dP~a~L~~Ndy 340 (528)
++.|++..+.+--+.++..|-.|++.+-. . + ......+|+....+.+.++..+ .|.+-|-
T Consensus 107 v~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~Gad-~I~IkDt 185 (468)
T PRK12581 107 VDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMGAD-SICIKDM 185 (468)
T ss_pred HHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcCCC-EEEECCC
Confidence 45567777777667778888888764210 0 0 0111235666666666666544 5666664
Q ss_pred CcccCCCCcchhHHHHHHHHHHHHhCC-ceeeEEeeeccCCC
Q 035723 341 NVVETCSDENSTVDRYISRLRELKRGG-VLMDGIGLESHFTV 381 (528)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~v~~l~~~G-~~iDgIG~Q~H~~~ 381 (528)
.-+ ..+....++++.|++.. +| |++|+|-..
T Consensus 186 aG~-------l~P~~v~~Lv~alk~~~~~p---i~~H~Hnt~ 217 (468)
T PRK12581 186 AGI-------LTPKAAKELVSGIKAMTNLP---LIVHTHATS 217 (468)
T ss_pred CCC-------cCHHHHHHHHHHHHhccCCe---EEEEeCCCC
Confidence 322 13566667777776632 33 677888544
No 200
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=21.78 E-value=8e+02 Score=24.38 Aligned_cols=130 Identities=12% Similarity=-0.034 Sum_probs=68.2
Q ss_pred eecCCccCChhHHHHHHhhcCeeccCCcccCcccccCCCccCcchHHHHHHHHHhcCceEEEeeeeeCCCCCCcccccCC
Q 035723 192 AIASTILGNLPYQKWFVERFNAAVFENELKWYATEPEQGKINYTIADQMMEFVRSNQLIARGHNIFWEDPKYTPAWVRNL 271 (528)
Q Consensus 192 av~~~~~~~~~y~~~~~~~Fn~vt~eN~~kW~~~Ep~~G~~~~~~~D~~v~~a~~~gi~vrGH~L~W~~~~~~P~W~~~~ 271 (528)
+++...++.+.++.+-..+++.+.+.-+........-.+..+|+..-+.++.++++||.+..|.++-..+
T Consensus 115 ~~~~g~~~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl~e---------- 184 (296)
T TIGR00433 115 CATLGLLDPEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIFGLGE---------- 184 (296)
T ss_pred EecCCCCCHHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeEEEeCCC----------
Confidence 3444444444455555567888776533222222222234577776778999999999999887763211
Q ss_pred ChHHHHHHHHHHHHHHHHHccCceeEEEeeccccccccccc--ccChHHHHHHHHHHHhhCCCcEEEe
Q 035723 272 TGPALQSAVNSRIQSLMNKYKEEFIHWDVSNEMLHFDFYEQ--RLGHDATLHFYETAHQSDPLATLFM 337 (528)
Q Consensus 272 ~~~~~~~~~~~~I~~v~~rY~g~v~~WDVvNE~~~~~~~~~--~~G~d~~~~af~~Ar~~dP~a~L~~ 337 (528)
+.+++ .+.++.+. +.+-....+-+.. |..+..+.+ .+..+.....+..+|...|+..+-+
T Consensus 185 t~~d~----~~~~~~l~-~l~~~~i~l~~l~-p~~gT~l~~~~~~s~~~~~~~ia~~r~~lp~~~i~~ 246 (296)
T TIGR00433 185 TVEDR----IGLALALA-NLPPESVPINFLV-KIKGTPLADNKELSADDALKTIALARIIMPKAEIRL 246 (296)
T ss_pred CHHHH----HHHHHHHH-hCCCCEEEeeeeE-EcCCCccCCCCCCCHHHHHHHHHHHHHHCCcceEEE
Confidence 22332 22333222 2222211222221 212222222 2334556688888999999877733
No 201
>COG1540 Uncharacterized proteins, homologs of lactam utilization protein B [General function prediction only]
Probab=21.46 E-value=5.9e+02 Score=25.21 Aligned_cols=91 Identities=19% Similarity=0.140 Sum_probs=57.2
Q ss_pred chHHHHHHHHHhcCceEEEeeeeeCCCCCCccccc------CCChHHHHHHHHHHHHHH---HHHccCceeEEEeecccc
Q 035723 235 TIADQMMEFVRSNQLIARGHNIFWEDPKYTPAWVR------NLTGPALQSAVNSRIQSL---MNKYKEEFIHWDVSNEML 305 (528)
Q Consensus 235 ~~~D~~v~~a~~~gi~vrGH~L~W~~~~~~P~W~~------~~~~~~~~~~~~~~I~~v---~~rY~g~v~~WDVvNE~~ 305 (528)
...++.|++|++||+.+-.|+- .|+-.. .++++++.+.+.=-|-.+ ++-=++++.+-- |
T Consensus 44 ~~M~rtV~lA~e~gV~IGAHPg-------yPDl~gFGRr~m~~~~~e~~a~~lYQiGAL~a~~~a~G~~~~hVK----p- 111 (252)
T COG1540 44 LTMRRTVRLAKENGVAIGAHPG-------YPDLVGFGRREMALSPEELYAQVLYQIGALQAFARAQGGVVQHVK----P- 111 (252)
T ss_pred HHHHHHHHHHHHcCCeeccCCC-------CccccccCccccCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEec----c-
Confidence 3568899999999999999974 666542 357888776665444443 333444554432 2
Q ss_pred cccccccccChH-HHHHHHHHHHhhCCCcEEEe
Q 035723 306 HFDFYEQRLGHD-ATLHFYETAHQSDPLATLFM 337 (528)
Q Consensus 306 ~~~~~~~~~G~d-~~~~af~~Ar~~dP~a~L~~ 337 (528)
|+-.+.+.-.+. ......+.++..||+..|+.
T Consensus 112 HGALYN~~a~D~~la~av~~av~~~dp~L~l~~ 144 (252)
T COG1540 112 HGALYNQAAKDRALADAVAEAVAAFDPSLILMG 144 (252)
T ss_pred cHHHHHHhhcCHHHHHHHHHHHHHhCCCceEEe
Confidence 333333333333 34455677788899998875
No 202
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=21.39 E-value=2e+02 Score=29.62 Aligned_cols=93 Identities=16% Similarity=0.195 Sum_probs=51.3
Q ss_pred HHHHHHHhcCceEEEeeeeeCCCCCCcccccCC-C-hHHHHHHHHHHHHHHHHHccCceeEEEeecccccccc-cccccC
Q 035723 239 QMMEFVRSNQLIARGHNIFWEDPKYTPAWVRNL-T-GPALQSAVNSRIQSLMNKYKEEFIHWDVSNEMLHFDF-YEQRLG 315 (528)
Q Consensus 239 ~~v~~a~~~gi~vrGH~L~W~~~~~~P~W~~~~-~-~~~~~~~~~~~I~~v~~rY~g~v~~WDVvNE~~~~~~-~~~~~G 315 (528)
..++.|-+||.+|.|- ++..-. ....|+..+ . +++-...+.+.+-+++..|+ ++.|-|.-|...... -...+
T Consensus 46 ~widaAHrnGV~vLGT-iife~~-~~~~~~~~ll~~~~~g~~~~A~kLi~ia~~yG--FDGw~iN~E~~~~~~~~~~~l- 120 (311)
T PF03644_consen 46 GWIDAAHRNGVKVLGT-IIFEWG-GGAEWCEELLEKDEDGSFPYADKLIEIAKYYG--FDGWLINIETPLSGPEDAENL- 120 (311)
T ss_dssp HHHHHHHHTT--EEEE-EEEEEE---HHHHHHHT---TTS--HHHHHHHHHHHHHT----EEEEEEEESSTTGGGHHHH-
T ss_pred hhHHHHHhcCceEEEE-EEecCC-chHHHHHHHHcCCcccccHHHHHHHHHHHHcC--CCceEEEecccCCchhHHHHH-
Confidence 3789999999999995 443211 134565542 2 22233455677778888885 889997777643221 00001
Q ss_pred hHHHHHHHHHHHhhCCCcEEEe
Q 035723 316 HDATLHFYETAHQSDPLATLFM 337 (528)
Q Consensus 316 ~d~~~~af~~Ar~~dP~a~L~~ 337 (528)
.++++..-+.+++ .|..+|.-
T Consensus 121 ~~F~~~l~~~~~~-~~~~~v~W 141 (311)
T PF03644_consen 121 IDFLKYLRKEAHE-NPGSEVIW 141 (311)
T ss_dssp HHHHHHHHHHHHH-T-T-EEEE
T ss_pred HHHHHHHHHHhhc-CCCcEEEE
Confidence 3567888888888 88877754
No 203
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=21.07 E-value=5e+02 Score=28.93 Aligned_cols=40 Identities=18% Similarity=0.450 Sum_probs=20.6
Q ss_pred HHHHHHhCCceeeEEeeeccCCCCCHHHHHHHHHHHHhCCCC
Q 035723 359 RLRELKRGGVLMDGIGLESHFTVPNLPLMRAILDKLATLNLP 400 (528)
Q Consensus 359 ~v~~l~~~G~~iDgIG~Q~H~~~p~~~~i~~~L~~~a~~glp 400 (528)
+|+++.+.|.+||||-+-+- .|+.++-.+.++.|.+-|+|
T Consensus 113 Lv~kara~G~~I~gvvIsAG--IP~le~A~ElI~~L~~~G~~ 152 (717)
T COG4981 113 LVQKARASGAPIDGVVISAG--IPSLEEAVELIEELGDDGFP 152 (717)
T ss_pred HHHHHHhcCCCcceEEEecC--CCcHHHHHHHHHHHhhcCce
Confidence 45666677777777655332 24444444444444444443
No 204
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=20.90 E-value=4.7e+02 Score=26.77 Aligned_cols=131 Identities=22% Similarity=0.309 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHH-HccCceeEEEeecccccccccccccC-hHHHHHHHHHHHhhCCCcEEEeecCCcccCCCCcchhHH
Q 035723 277 QSAVNSRIQSLMN-KYKEEFIHWDVSNEMLHFDFYEQRLG-HDATLHFYETAHQSDPLATLFMNEFNVVETCSDENSTVD 354 (528)
Q Consensus 277 ~~~~~~~I~~v~~-rY~g~v~~WDVvNE~~~~~~~~~~~G-~d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~ 354 (528)
.+++++....... -|. .+..|+.+..+-|.. .++ -||+...|.---+..- .+-|-.|-.++-.
T Consensus 36 I~~Le~~~~~~~~~iy~-~L~~wq~~q~ARhp~----RP~tldyi~~i~~df~eL~G-DR~f~dD~Aivgg--------- 100 (317)
T COG0825 36 IERLEKRLAELTKKIYS-NLTPWQRVQLARHPD----RPYTLDYIELLFTDFVELHG-DRAFADDPAIVGG--------- 100 (317)
T ss_pred HHHHHhhHHHHhhhhhc-cCCHHHHHHHhhCCC----CCcHHHHHHHHHhHHHHhcC-ccccCcChhheee---------
Confidence 4455555555544 354 578899988876643 222 3787766654444321 1111112111100
Q ss_pred HHHHHHHHHHhCCceeeEEeeec----------cCCCCCHHHHHHHHHHH---HhCCCCEEEEeeecCCC---C--ChhH
Q 035723 355 RYISRLRELKRGGVLMDGIGLES----------HFTVPNLPLMRAILDKL---ATLNLPIWLTEVDISGK---L--DKET 416 (528)
Q Consensus 355 ~~~~~v~~l~~~G~~iDgIG~Q~----------H~~~p~~~~i~~~L~~~---a~~glpI~iTE~dv~~~---~--~~~~ 416 (528)
+- .-+|-|+-.||.|- .|++|.++.+|.+|..+ ..+|+|| ||=+|.+.. . .|.-
T Consensus 101 -----la--r~~G~pv~vIG~qKG~dtk~~~~rNFGm~~PeGyRKAlRlm~~AekF~lPi-itfIDT~GAypG~~AEErG 172 (317)
T COG0825 101 -----LA--RFGGQPVVVIGHQKGRDTKEKLKRNFGMPRPEGYRKALRLMKLAEKFGLPI-ITFIDTPGAYPGIGAEERG 172 (317)
T ss_pred -----ee--eECCeeEEEEeeecCccchhHHHhcCCCCCchHHHHHHHHHHHHHHhCCCE-EEEecCCCCCCCcchhhcc
Confidence 00 01467888898883 34567788888887765 3689998 666776642 1 2334
Q ss_pred HHHHHHHHHHHHhc
Q 035723 417 QAVYLEQVLREGFS 430 (528)
Q Consensus 417 QA~~~~~~~~~~~s 430 (528)
|++-..+-+..+..
T Consensus 173 Q~eAIA~nL~em~~ 186 (317)
T COG0825 173 QSEAIARNLREMAR 186 (317)
T ss_pred cHHHHHHHHHHHhC
Confidence 66655554544443
No 205
>PF11730 DUF3297: Protein of unknown function (DUF3297); InterPro: IPR021724 This family is expressed in Proteobacteria and Actinobacteria. The function is not known.
Probab=20.56 E-value=1.1e+02 Score=23.94 Aligned_cols=25 Identities=24% Similarity=0.578 Sum_probs=17.7
Q ss_pred CCEEEEE-EEEEEccCCC-----cEEEEEEE
Q 035723 57 GTIYCFS-IWLKIEGANS-----AHVRASLK 81 (528)
Q Consensus 57 G~~Y~vS-awVk~~~g~~-----~~~~vt~~ 81 (528)
=..|.|| .|||+..|.+ +.+.|+++
T Consensus 34 VeEYciSEGWvrv~~gka~DR~G~Pl~iklk 64 (71)
T PF11730_consen 34 VEEYCISEGWVRVAAGKALDRRGNPLTIKLK 64 (71)
T ss_pred ceeEeccCCEEEeecCcccccCCCeeEEEEc
Confidence 3579998 7999999853 45555554
No 206
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=20.31 E-value=9.8e+02 Score=24.97 Aligned_cols=118 Identities=10% Similarity=0.023 Sum_probs=65.6
Q ss_pred HHHHHHHHhcCceEEEeeeeeCCCCCCcccc---cCCChHHHHHHHHHHHHHHHHHccCceeEEEeeccccccccccccc
Q 035723 238 DQMMEFVRSNQLIARGHNIFWEDPKYTPAWV---RNLTGPALQSAVNSRIQSLMNKYKEEFIHWDVSNEMLHFDFYEQRL 314 (528)
Q Consensus 238 D~~v~~a~~~gi~vrGH~L~W~~~~~~P~W~---~~~~~~~~~~~~~~~I~~v~~rY~g~v~~WDVvNE~~~~~~~~~~~ 314 (528)
++-++.+.+.|+... |.++ .. .+..+ .+.+.++..+.+.+.|+...++ +-.| .+. -| + ....
T Consensus 75 ~~di~~a~~~g~~~i-~i~~-~~---Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~-g~~v-~~~--~e--d----~~r~ 139 (365)
T TIGR02660 75 DADIEAAARCGVDAV-HISI-PV---SDLQIEAKLRKDRAWVLERLARLVSFARDR-GLFV-SVG--GE--D----ASRA 139 (365)
T ss_pred HHHHHHHHcCCcCEE-EEEE-cc---CHHHHHHHhCcCHHHHHHHHHHHHHHHHhC-CCEE-EEe--ec--C----CCCC
Confidence 344777888888754 3332 10 11111 1245666666666666644432 2223 221 11 1 1133
Q ss_pred ChHHHHHHHHHHHhhCCCcEEEeecCCcccCCCCcchhHHHHHHHHHHHHhC-CceeeEEeeeccCCC
Q 035723 315 GHDATLHFYETAHQSDPLATLFMNEFNVVETCSDENSTVDRYISRLRELKRG-GVLMDGIGLESHFTV 381 (528)
Q Consensus 315 G~d~~~~af~~Ar~~dP~a~L~~Ndy~~~~~~~~~~~~~~~~~~~v~~l~~~-G~~iDgIG~Q~H~~~ 381 (528)
.++|+...++.+.++.++ .+.+-|-.-. ..+..+.++++.++++ +++ ||+|+|-..
T Consensus 140 ~~~~l~~~~~~~~~~Ga~-~i~l~DT~G~-------~~P~~v~~lv~~l~~~~~v~---l~~H~HNd~ 196 (365)
T TIGR02660 140 DPDFLVELAEVAAEAGAD-RFRFADTVGI-------LDPFSTYELVRALRQAVDLP---LEMHAHNDL 196 (365)
T ss_pred CHHHHHHHHHHHHHcCcC-EEEEcccCCC-------CCHHHHHHHHHHHHHhcCCe---EEEEecCCC
Confidence 478999999999988776 4556553221 2356677777777664 443 789999543
No 207
>PF07367 FB_lectin: Fungal fruit body lectin; InterPro: IPR009960 This family consists of several fungal fruit body lectin proteins. Fruit body lectins are thought to have insecticidal activity [] and may also function in capturing nematodes []. One member of this family, the lectin XCL from Xerocomus chrysenteron, induces drastic changes in the actin cytoskeleton after sugar binding at the cell surface and internalization, and has potent insecticidal activity. The fold of lectin xcl is not related to any of several lectin folds, but but shows significant structural similarity to cytolysins [].; PDB: 3QDX_A 3QDT_B 3QDW_A 3QDY_A 3QDU_A 3QDS_A 3QDV_B 1XI0_A 1X99_B 1Y2X_C ....
Probab=20.23 E-value=4.8e+02 Score=23.53 Aligned_cols=27 Identities=26% Similarity=0.566 Sum_probs=20.5
Q ss_pred CCCEEEEEeEEEec--CCCCeeEEEEEcC
Q 035723 97 QGCWSFLKGGFVLD--SPSNLSILFFQNS 123 (528)
Q Consensus 97 ~~~Wt~l~g~~t~~--~~~~~~~ly~E~~ 123 (528)
.+.|++..|.+++. .++++-.|-|+.+
T Consensus 31 ggtWt~~~g~~vL~mggSGTSG~LRf~~~ 59 (140)
T PF07367_consen 31 GGTWTEVNGEHVLTMGGSGTSGMLRFKSD 59 (140)
T ss_dssp -EEEEEETTEEEEEESSSSEEEEEEEEET
T ss_pred CceEEecCCEEEEEecCCCcceEEEEEcC
Confidence 57899999987665 5567888988864
Done!