BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035724
(1939 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O15050|TRNK1_HUMAN TPR and ankyrin repeat-containing protein 1 OS=Homo sapiens GN=TRANK1
PE=2 SV=4
Length = 2925
Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 118/475 (24%), Positives = 206/475 (43%), Gaps = 64/475 (13%)
Query: 891 ETSLIYGEPPILLESRNDENAIIKIFGNSGDAGGNMVGFGAEQVILVRDDCVRKEISNYV 950
++ L G P +LES + + I + GN + FGA QVILV ++ +++I +
Sbjct: 1499 DSGLFDGPKPTVLESCSVSDLAILLRGNKRKT--QPIEFGAHQVILVANETAKEKIPEEL 1556
Query: 951 GKQALVLTIVESKGLEFQ-VIHYT-----------------------SQCCNSPFKHALF 986
G ALVLTI E+KGLEF V+ Y S+ N P
Sbjct: 1557 G-LALVLTIYEAKGLEFDDVLLYNFFTDSEAYKEWKIISSFTPTSTDSREENRPLVEVPL 1615
Query: 987 D--STSPGSFPSFNEAKHNVLCSELKQLYVAITRTRQRLWIWENMEEFSKPMFDYWKKKS 1044
D +S G N + +L ELKQLY AITR R LWI++ E P F Y+ ++
Sbjct: 1616 DKPGSSQGRSLMVNPEMYKLLNGELKQLYTAITRARVNLWIFDENREKRAPAFKYFIRRD 1675
Query: 1045 LVQVRQLDDS--LAQAMQV-ASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSK 1101
VQV + D++ +M V S+P EW ++G + +A C++K ++ + +
Sbjct: 1676 FVQVVKTDENKDFDDSMFVKTSTPAEWIAQGDYYAKHQCWKVAAKCYQKG-GAFEKEKLA 1734
Query: 1102 ATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERR 1161
A + + + +PK+ + E AK + + + KC E++ + ++ ER
Sbjct: 1735 LAHDTALSMKSKKVSPKEKQLEYLELAKTYLECKEPTLSLKCLSYAKEFQLSAQL-CERL 1793
Query: 1162 EEPELEKAGECFFLAGCYKLAADVYAKGKFFSECLAVCSKGKLFEIGLQYMNHWKQHADT 1221
++ A + + CYK A + + + F L + + +LFE + +++ T
Sbjct: 1794 --GKIRDAAYFYKRSQCYKDAFRCFEQIQEFDLALKMYCQEELFEEAAIAVEKYEEMLKT 1851
Query: 1222 DVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRSVDLMRKFLK 1281
+++ I+K L A +Y ++ + S + M++ +
Sbjct: 1852 -------------KTLPISK-----LSYSASQFY--------LEAAAKYLSANKMKEMMA 1885
Query: 1282 SLSCFD--DLLVLEEESGNFMDAANIARLRGDIFLAVDLLQKAGCFKEACNVTLN 1334
LS D D LV + +AA++ G A L+++ GC EA +T +
Sbjct: 1886 VLSKLDIEDQLVFLKSRKRLAEAADLLNREGRREEAALLMKQHGCLLEAARLTAD 1940
Score = 42.7 bits (99), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 663 DSESDLGGAASDSTSYVENSNVSDSLLLMKFYSLSSGAVSHLLSDRDGGELDLPFEVTDE 722
D+E++ G + + S V +MKF+S S+ ++L+D ++ PF V +
Sbjct: 955 DTEAEKGREHVNPEYFPPASAVETEYNIMKFHSFSTNMAFNILND-TTATVEYPFRVGEL 1013
Query: 723 QLEMI-LFPKS---SFILGRSGTGKTTILTMKLFQK 754
+ +I L P+ ++GRSGTGKTT +L++K
Sbjct: 1014 EYAVIDLNPRPLEPIILIGRSGTGKTTCCLYRLWKK 1049
>sp|Q8BV79|TRNK1_MOUSE TPR and ankyrin repeat-containing protein 1 OS=Mus musculus GN=Trank1
PE=2 SV=3
Length = 2999
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 115/475 (24%), Positives = 195/475 (41%), Gaps = 65/475 (13%)
Query: 891 ETSLIYGEPPILLESRNDENAIIKIFGNSGDAGGNMVGFGAEQVILVRDDCVRKEISNYV 950
++ L G P LL+S + + I + GN + FGA QVILV ++ +++I +
Sbjct: 1573 DSGLFDGPKPTLLDSCSVSDLAILLRGNKRKT--QPIEFGAHQVILVANEKAKEKIPEEL 1630
Query: 951 GKQALVLTIVESKGLEF------------------QVIHYTSQCCNS-----PFKHALFD 987
G ALVLT+ E+KGLEF ++I + +S P +
Sbjct: 1631 G-LALVLTVYEAKGLEFDDVLLYNFFTDSEAYKEWKIISSFTPSSDSREEKWPLVDVPLE 1689
Query: 988 STSPGSFPSF--NEAKHNVLCSELKQLYVAITRTRQRLWIWENMEEFSKPMFDYWKKKSL 1045
+SP S N + +L ELKQLY AITR R LWI++ E P F Y+ ++
Sbjct: 1690 RSSPSQARSLMVNPEMYKLLNGELKQLYTAITRARVNLWIFDENLEKRAPAFKYFIRRDF 1749
Query: 1046 VQVRQLDDS--LAQAMQV-ASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKA 1102
VQV + D++ +M V S+P EW +G + +A C++K D+ + +
Sbjct: 1750 VQVVKTDENKDFDDSMFVKTSTPYEWIIQGDYYAKHQCWKVAAKCYQKG-DALEKEKLAL 1808
Query: 1103 TGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERRE 1162
A + + +PK+ + E AK + + + KC E++ + ++
Sbjct: 1809 AHYTALNMKSKKFSPKEKELQYLELAKTYLECNEPKLSLKCLSYAKEFQLSAQL------ 1862
Query: 1163 EPELEKAGECFFLAGCYKLAADVYAKGKFFSECLAVCSKGKLFEIGLQYMNHWKQHADTD 1222
C L G + AA Y + + F + + + F++ L+ + +
Sbjct: 1863 ---------CERL-GKIRDAAYFYKRSQCFQDAFRCFEQIQEFDLALRMYCQEELFEEAA 1912
Query: 1223 VEHAGTDVGLLVRSMEINKIE---QEFLEKCAIHYYGLQDKKSMMKFVKSFRSVDLMRKF 1279
+ + L ++ I K+ +F + A Y K MM + D + F
Sbjct: 1913 IAVEKYEEMLKNKTFPIPKLSYSASQFYLEAAAKYLSANKSKEMMAVLSKLDVEDQL-VF 1971
Query: 1280 LKSLSCFDDLLVLEEESGNFMDAANIARLRGDIFLAVDLLQKAGCFKEACNVTLN 1334
LKS C +AA + G A L+++ GC EA +T N
Sbjct: 1972 LKSRKC-------------LAEAAELLNREGRREEAALLMKQHGCLLEAARLTAN 2013
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 91/222 (40%), Gaps = 44/222 (19%)
Query: 593 YFQVLKVWDILPLEDVPKLVARLDNILAKYTDEFINHCKEKC-------IEGNLEVPKTW 645
Y +++++WDI+ D KL + I + YT ++K + N+++ K
Sbjct: 967 YTEIIRIWDIV--LDHCKLSDSIMAICSAYTRGLSCVLRKKLKGINKGQVSANMKIQK-- 1022
Query: 646 AATSKVVRFKNLADIDSDSESDLGGAASDSTSYVENSNVSDSLLLMKFYSLSSGAVSHLL 705
R D+++E L D + S V +MKF+S S+ ++L
Sbjct: 1023 -------RIPRCYVEDTEAEKSLEQV--DPEYFPPASAVETEYSIMKFHSFSTNMALNIL 1073
Query: 706 SDRDGGELDLPFEVTDEQLEMI-LFPKS---SFILGRSGTGKTTILTMKLFQKEKLHHMA 761
+D ++ PF V + + +I L PK ++GRSGTGKTT +L++K
Sbjct: 1074 NDMTAT-VEYPFRVGELEYAVIDLNPKPLEPIILIGRSGTGKTTCCLYRLWKK------- 1125
Query: 762 MDGFYGVNNSVTLHSSWESGAEEGLGETERPILRQLFVTVSP 803
H WE + G + IL + + V P
Sbjct: 1126 ------------FHVYWEKAEQAGSPLLSKQILPKRRLEVEP 1155
>sp|Q00416|SEN1_YEAST Helicase SEN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SEN1 PE=1 SV=2
Length = 2231
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 96/174 (55%), Gaps = 7/174 (4%)
Query: 261 IFCTASSSYKLHRVAMEQLKF--LVIDEAAQLKEVESAIPLKLPGIQHAILIGDECQLPA 318
I C+ S +A +KF ++IDEA Q E+ S IPL+ G + I++GD QLP
Sbjct: 1564 IICSTLSGSAHDVLATMGIKFDTVIIDEACQCTELSSIIPLRYGG-KRCIMVGDPNQLPP 1622
Query: 319 MVESSVSGEACLGRSLFERLSNLGQAKHLLSIQYRMHPSISSFPNSYFYDNKIFDSPNVK 378
V S + +SLF R+ + +LL +QYRMHPSIS FP+S FY ++ D P +
Sbjct: 1623 TVLSGAASNFKYNQSLFVRMEK-NSSPYLLDVQYRMHPSISKFPSSEFYQGRLKDGPGMD 1681
Query: 379 EKNYEKRFLPGRMYGPYSFINVLDGREESIAH--SYRNMVEVFVVMKILLNLYK 430
N ++ + PY F +++ GR+E A SY NM E+ V ++++ L++
Sbjct: 1682 ILN-KRPWHQLEPLAPYKFFDIISGRQEQNAKTMSYTNMEEIRVAIELVDYLFR 1734
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 6/42 (14%)
Query: 206 SSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTV 247
S LN SQA+A+++ + K LI GPPGTGKTKT+
Sbjct: 1332 SYKLNTSQAEAIVNSV------SKEGFSLIQGPPGTGKTKTI 1367
>sp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2
SV=1
Length = 818
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 101/199 (50%), Gaps = 10/199 (5%)
Query: 239 PGTGKTKT-VSMLLDFCFTKASLIFCTAS-SSYKLHRVAMEQLKFLVIDEAAQLKEVESA 296
P G T T + + +A+++F T S S L + ++IDEAAQ E +
Sbjct: 442 PKQGTTGTDIDSIRTAILEEAAIVFATLSFSGSALLAKSNRGFDVVIIDEAAQAVEPATL 501
Query: 297 IPLKLPGIQHAILIGDECQLPAMVESSVSGEACLGRSLFERLSNLGQAKHLLSIQYRMHP 356
IPL + L+GD QLPA V S+V+ ++ G S+FERL G +L QYRMHP
Sbjct: 502 IPLAT-RCKQVFLVGDPKQLPATVISTVAQDSGYGTSMFERLQKAGYPVKMLKTQYRMHP 560
Query: 357 SISSFPNSYFYDNKIFDSPNVKEKNYEKRFLPGRMYGPYSFINVLDGREE---SIAHSYR 413
I SFP+ FY+ + D ++ E + + R +GP+ F ++ +G+E S
Sbjct: 561 EIRSFPSKQFYEGALEDGSDI-EAQTTRDWHKYRCFGPFCFFDIHEGKESQHPGATGSRV 619
Query: 414 NMVEVFVVMKI---LLNLY 429
N+ EV V+ I L+ +Y
Sbjct: 620 NLDEVEFVLLIYHRLVTMY 638
Score = 37.7 bits (86), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 120/271 (44%), Gaps = 55/271 (20%)
Query: 7 SFQSVNRYFESFVFPLLEETRAQL--SSSMEKISEAPFAQVVDLEDSKPYGAMLSDVKVD 64
+++ V+ YFE+F L EE +AQ+ + E+ S V++ + + + +L V
Sbjct: 53 TYKDVDDYFETFEPLLFEEVKAQILQNKDGEEASVCKMRLVMECNEGEGFHFLL----VT 108
Query: 65 YWRNRFSNYSKESYKVLPGDILVLADAKPETAS---------------DLRRVGRMWTFV 109
Y + ++ Y + D+L+L+ + + S +L R+ RM+
Sbjct: 109 Y------EHEEDEY-LAQNDLLLLSKEEVKGNSFPSSYGFAVVEHRQNNLLRL-RMYLAE 160
Query: 110 SVTKVTEDKNESDTTS------TSFKVKASKENQIDGANKSLFAIFLTNVTSNTRIWNSL 163
+ ++T++ S T S + S + ID K +F++ L +++ R + +L
Sbjct: 161 DIVQITKNTKSSRTKSFIQALSNMRSLITSSASPID---KRVFSLKLCGLSTIIREYIAL 217
Query: 164 HMSGNLKIIKELLCTDSVVKEDCELCPVQSDGIWNDIFGPS---LSSTLNDSQAQAVLSC 220
+L K+L+ T ++ C D W I GP + LN SQ +A+
Sbjct: 218 RSVSSLPF-KDLIFT--AAEKSCGF----GDEAWK-ISGPLNEFFNENLNKSQKEAIDVG 269
Query: 221 LRRTHCDHKATVELIWGPPGTGKTKTVSMLL 251
L R + LI GPPGTGKT+T+ +L
Sbjct: 270 LSRK------SFVLIQGPPGTGKTQTILSIL 294
>sp|Q9FJR0|RENT1_ARATH Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana
GN=UPF1 PE=1 SV=2
Length = 1254
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 91/175 (52%), Gaps = 4/175 (2%)
Query: 258 ASLIFCTASSSYKLHRVAMEQLKFLVIDEAAQLKEVESAIPLKLPGIQHAILIGDECQLP 317
A +I CT + L R++ + + ++IDE+ Q E E IPL L G++ +L+GD CQL
Sbjct: 630 ADVICCTCVGAADL-RLSNFRFRQVLIDESTQATEPECLIPLVL-GVKQVVLVGDHCQLG 687
Query: 318 AMVESSVSGEACLGRSLFERLSNLGQAKHLLSIQYRMHPSISSFPNSYFYDNKIFDSPNV 377
++ + A L +SLFERL LG L +QYRMHP++S FP++ FY+ + + +
Sbjct: 688 PVIMCKKAARAGLAQSLFERLVTLGIKPIRLQVQYRMHPALSEFPSNSFYEGTLQNGVTI 747
Query: 378 KEKNYEKRFLPGRMYGPYSFINVLDGREESIAH--SYRNMVEVFVVMKILLNLYK 430
E+ P + F V G+EE A SY N E V K++ K
Sbjct: 748 IERQTTGIDFPWPVPNRPMFFYVQLGQEEISASGTSYLNRTEAANVEKLVTAFLK 802
>sp|Q9EPU0|RENT1_MOUSE Regulator of nonsense transcripts 1 OS=Mus musculus GN=Upf1 PE=1
SV=2
Length = 1124
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 92/178 (51%), Gaps = 8/178 (4%)
Query: 258 ASLIFCTASSSYKLHRVAMEQLKFLVIDEAAQLKEVESAIPLKLPGIQHAILIGDECQLP 317
A +I CT + R+A Q + ++IDE+ Q E E +P+ L G + IL+GD CQL
Sbjct: 616 ADVICCTCVGAGD-PRLAKMQFRSILIDESTQATEPECMVPVVL-GAKQLILVGDHCQLG 673
Query: 318 AMVESSVSGEACLGRSLFERLSNLGQAKHLLSIQYRMHPSISSFPNSYFYDNKIFDSPNV 377
+V + +A L +SLFERL LG L +QYRMHP++S+FP++ FY+ + + V
Sbjct: 674 PVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQN--GV 731
Query: 378 KEKNYEKRFLPGRMYGPYS--FINVLDGREE--SIAHSYRNMVEVFVVMKILLNLYKV 431
+ K+ + P F V G+EE S SY N E V KI L K
Sbjct: 732 TAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKA 789
>sp|Q92900|RENT1_HUMAN Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1
SV=2
Length = 1129
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 92/178 (51%), Gaps = 8/178 (4%)
Query: 258 ASLIFCTASSSYKLHRVAMEQLKFLVIDEAAQLKEVESAIPLKLPGIQHAILIGDECQLP 317
A +I CT + R+A Q + ++IDE+ Q E E +P+ L G + IL+GD CQL
Sbjct: 621 ADVICCTCVGAGD-PRLAKMQFRSILIDESTQATEPECMVPVVL-GAKQLILVGDHCQLG 678
Query: 318 AMVESSVSGEACLGRSLFERLSNLGQAKHLLSIQYRMHPSISSFPNSYFYDNKIFDSPNV 377
+V + +A L +SLFERL LG L +QYRMHP++S+FP++ FY+ + + V
Sbjct: 679 PVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQN--GV 736
Query: 378 KEKNYEKRFLPGRMYGPYS--FINVLDGREE--SIAHSYRNMVEVFVVMKILLNLYKV 431
+ K+ + P F V G+EE S SY N E V KI L K
Sbjct: 737 TAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKA 794
>sp|Q92355|SEN1_SCHPO Helicase sen1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sen1 PE=1 SV=1
Length = 1687
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 84/165 (50%), Gaps = 5/165 (3%)
Query: 257 KASLIFCTASSSYKLHRVAMEQLKF--LVIDEAAQLKEVESAIPLKLPGIQHAILIGDEC 314
K + + C S VA L F ++IDEAAQ E+++ IPL+ G + IL+GD
Sbjct: 1348 KQADVVCATLSGSGHDLVAHSSLNFSTVIIDEAAQAVELDTIIPLRY-GAKKCILVGDPN 1406
Query: 315 QLPAMVESSVSGEACLGRSLFERLS-NLGQAKHLLSIQYRMHPSISSFPNSYFYDNKIFD 373
QLP V S + +SLF R+ N LLSIQYRMHP IS FP+ FYD+++ D
Sbjct: 1407 QLPPTVLSKKAASLNYSQSLFVRIQKNFSNQMCLLSIQYRMHPDISHFPSKKFYDSRLED 1466
Query: 374 SPNVKEKNYEKRFLPGRMYGPYSFINVLDGREESIAHSYRNMVEV 418
N+ EK + + + + Y +V S S N+ EV
Sbjct: 1467 GDNMAEKTQQVWHVNPK-FTQYRLFDVRGKERTSNTMSTYNLEEV 1510
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 15/112 (13%)
Query: 136 NQIDGANKSLFAIFLTNVTSNTRIWNSLHMSGNLKIIKELLCTDSVVKEDCELCPVQSDG 195
N++ G N +L+ + LTN+ + TR + ++ + D +++ PV+
Sbjct: 1066 NKLQG-NCALWFLKLTNLATFTRQY------AGIRGLPYFHLADDIIRARPCSQPVKHSS 1118
Query: 196 IWNDIFGPSLSSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTV 247
++I +N+ QA+A++ L D+ LI GPPGTGKTKT+
Sbjct: 1119 --SEIKAAMKRYQVNEPQAKAIMCAL-----DNNG-FTLIQGPPGTGKTKTI 1162
>sp|O94387|YGSA_SCHPO Uncharacterized ATP-dependent helicase C29A10.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC29A10.10c PE=3 SV=1
Length = 1944
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 4/168 (2%)
Query: 257 KASLIFCTASSS-YKLHRVAMEQLKFLVIDEAAQLKEVESAIPLKLPGIQHAILIGDECQ 315
+A ++ T S+S ++L A + ++IDEAAQ E+ S IPLK G + +++GD Q
Sbjct: 1487 EADIVCATLSASGHELLLNAGLTFRTVIIDEAAQAVELSSIIPLKY-GCESCVMVGDPNQ 1545
Query: 316 LPAMVESSVSGEACLGRSLFERL-SNLGQAKHLLSIQYRMHPSISSFPNSYFYDNKIFDS 374
LP V S S + +SL+ R+ ++ LLSIQYRM+P IS FP+ +FY++K+ D
Sbjct: 1546 LPPTVLSKTSAKFGYSQSLYVRMFKQHNESACLLSIQYRMNPEISRFPSKFFYNSKLLDG 1605
Query: 375 PNVKEKNYEKRFLPGRMYGPYSFINVLDGREESIAHSYRNMVEVFVVM 422
PN+ + + G Y F NV S + S N+ E ++
Sbjct: 1606 PNMSAVT-SRPWHEDPQLGIYRFFNVHGTEAFSNSKSLYNVEEASFIL 1652
>sp|Q9VYS3|RENT1_DROME Regulator of nonsense transcripts 1 homolog OS=Drosophila
melanogaster GN=Upf1 PE=1 SV=2
Length = 1180
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 86/171 (50%), Gaps = 7/171 (4%)
Query: 263 CTASSSYKLHRVAMEQLKFLVIDEAAQLKEVESAIPLKLPGIQHAILIGDECQLPAMVES 322
C + +L RV + ++IDE+ Q E E +P+ L G + IL+GD CQL +V
Sbjct: 598 CVGAGDGRLSRV---KFTSILIDESMQSTEPECMVPVVL-GAKQLILVGDHCQLGPVVMC 653
Query: 323 SVSGEACLGRSLFERLSNLGQAKHLLSIQYRMHPSISSFPNSYFYDNKIFDSPNVKEKNY 382
+ A L +SLFERL LG L +QYRMHP +S FP+++FY+ + + +++
Sbjct: 654 KKAARAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRRL 713
Query: 383 EKRFLPGRMYGPYSFINVLDGREE--SIAHSYRNMVEVFVVMKILLNLYKV 431
+ F + P F+ V G+EE S+ N E V KI K
Sbjct: 714 KLDFPWPQPERPMFFL-VTQGQEEIAGSGTSFLNRTEAANVEKITTRFLKA 763
>sp|Q54I89|RENT1_DICDI Regulator of nonsense transcripts 1 OS=Dictyostelium discoideum
GN=upf1 PE=3 SV=1
Length = 1331
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 89/177 (50%), Gaps = 2/177 (1%)
Query: 250 LLDFCFTKASLIFCTASSSYKLHRVAMEQLKFLVIDEAAQLKEVESAIPLKLPGIQHAIL 309
+++ + + + C R++ + ++IDE+ Q E E IPL + G + IL
Sbjct: 671 MMEMAILRKADVICATCVGAGDPRLSQFRFPHILIDESTQASEPECLIPLMM-GAKQVIL 729
Query: 310 IGDECQLPAMVESSVSGEACLGRSLFERLSNLGQAKHLLSIQYRMHPSISSFPNSYFYDN 369
+GD QL ++ +A L +SLFERL +LG L+IQYRMHPS++ FP++ Y+
Sbjct: 730 VGDHRQLGPVLLCKKVVDAGLSQSLFERLISLGHHPERLTIQYRMHPSLTEFPSNTSYEG 789
Query: 370 KIFDSPNVKEKNYEKRFLPGRMYGPYSFINVLDGRE-ESIAHSYRNMVEVFVVMKIL 425
++ + +++ + +F + P F N E S S+ N E + KI+
Sbjct: 790 QLVSELSHTDRDSQSKFPWPQPKDPMFFFNCTGSEEISSSGTSFINTTEASICEKIV 846
>sp|P30771|NAM7_YEAST ATP-dependent helicase NAM7 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=NAM7 PE=1 SV=1
Length = 971
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 91/178 (51%), Gaps = 5/178 (2%)
Query: 255 FTKASLIFCTASSSYKLHRVAMEQLKFLVIDEAAQLKEVESAIPLKLPGIQHAILIGDEC 314
KA ++ CT + + + + ++IDE+ Q E E IP+ + G + IL+GD
Sbjct: 544 LNKADVVCCTCVGAGD--KRLDTKFRTVLIDESTQASEPECLIPI-VKGAKQVILVGDHQ 600
Query: 315 QLPAMVESSVSGEACLGRSLFERLSNLGQAKHLLSIQYRMHPSISSFPNSYFYDNKIFDS 374
QL ++ + +A L +SLFERL +LG L +QYRM+P +S FP++ FY+ + +
Sbjct: 601 QLGPVILERKAADAGLKQSLFERLISLGHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNG 660
Query: 375 PNVKEKNYEKRFLPGRMYGPYSFINVLDGREESIAH--SYRNMVEVFVVMKILLNLYK 430
++++ P + G GREE A+ S+ N +E +I+ L++
Sbjct: 661 VTIEQRTVPNSKFPWPIRGIPMMFWANYGREEISANGTSFLNRIEAMNCERIITKLFR 718
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Query: 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFC--FTKASLIFCT 264
+ LN SQ+ AV L+R + LI GPPGTGKT T + ++ K ++ C
Sbjct: 407 AQLNSSQSNAVSHVLQRP-------LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCA 459
Query: 265 ASSSYKLHRVA-MEQLKFLVIDEAAQLKE-VESAI 297
S+ H A + L V+ A+ +E VES++
Sbjct: 460 PSNVAVDHLAAKLRDLGLKVVRLTAKSREDVESSV 494
>sp|Q09820|RENT1_SCHPO ATP-dependent helicase upf1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=upf1 PE=3 SV=2
Length = 925
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 68/124 (54%), Gaps = 1/124 (0%)
Query: 257 KASLIFCTASSSYKLHRVAMEQLKFLVIDEAAQLKEVESAIPLKLPGIQHAILIGDECQL 316
+A+ + C R++ + + ++IDEA Q E E IPL L G + +L+GD QL
Sbjct: 536 RAAHVICCTCVGAGDRRISKYKFRSVLIDEATQASEPECMIPLVL-GAKQVVLVGDHQQL 594
Query: 317 PAMVESSVSGEACLGRSLFERLSNLGQAKHLLSIQYRMHPSISSFPNSYFYDNKIFDSPN 376
+V + A L +SLFERL LG + L +QYRMHP +S FP++ FY+ + +
Sbjct: 595 GPVVMNKKVALASLSQSLFERLIILGNSPFRLVVQYRMHPCLSEFPSNTFYEGTLQNGVT 654
Query: 377 VKEK 380
E+
Sbjct: 655 TSER 658
>sp|Q86AS0|Y4399_DICDI Probable helicase DDB_G0274399 OS=Dictyostelium discoideum
GN=DDB_G0274399 PE=3 SV=1
Length = 967
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 81/158 (51%), Gaps = 5/158 (3%)
Query: 244 TKTVSMLLDFCFTKASLIFCTAS-SSYKLHRVAMEQLKFLVIDEAAQLKEVESAIPLKLP 302
T+ S + +A ++ T S S L ++IDEAAQ E + IP++
Sbjct: 549 TQDTSSIRTLVLDEADIVATTLSFSGASLLTKMAGGFDIVIIDEAAQAVETSTLIPIQH- 607
Query: 303 GIQHAILIGDECQLPAMVESSVSGEACLGRSLFERLSNLGQAKHLLSIQYRMHPSISSFP 362
G + +L+GD QLPA + S ++ + +SLF+RL + H+L+ QYRMH I +FP
Sbjct: 608 GCKKVVLVGDPKQLPATIISPLAIKYKYDQSLFQRLQE-KNSPHMLTTQYRMHSLIRAFP 666
Query: 363 NSYFYDNKIFDSPNVKEKNYEKRFLPGRMYGPYSFINV 400
+ +FY + + D PN+ + P +GP F ++
Sbjct: 667 SRHFYQDLLLDGPNIPSRATHYHSNP--FFGPLVFYDL 702
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 49/107 (45%), Gaps = 23/107 (21%)
Query: 150 LTNVTSNTRIWNSLHMSGNLKIIKELLCTDSVVKEDCELCPVQSDGIWNDIFGPSL---- 205
L N+++ R + +L+ +K L+ D +D E DGI I P L
Sbjct: 283 LCNLSTLQREFAALYQCSQSNFMKTLMMRD----DDGE------DGIVMKI--PPLLHDQ 330
Query: 206 -SSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLL 251
SST NDSQ A+ S L + LI GPPGTGKT + L+
Sbjct: 331 FSSTYNDSQLNALTSAL------EGNAITLIQGPPGTGKTHVILGLI 371
>sp|O76512|RENT1_CAEEL Regulator of nonsense transcripts 1 OS=Caenorhabditis elegans
GN=smg-2 PE=1 SV=1
Length = 1069
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 68/117 (58%), Gaps = 2/117 (1%)
Query: 255 FTKASLIFCTASSSYKLHRVAMEQLKFLVIDEAAQLKEVESAIPLKLPGIQHAILIGDEC 314
A +I CT SS+ R++ + + ++IDE+ Q E E + + + G++ +L+GD C
Sbjct: 581 LAAADVICCTCSSAADA-RLSKIRTRTVLIDESTQATEPEILVSI-MRGVRQLVLVGDHC 638
Query: 315 QLPAMVESSVSGEACLGRSLFERLSNLGQAKHLLSIQYRMHPSISSFPNSYFYDNKI 371
QL +V + A L +SLFERL LG L +QYRMHP +S FP++ FYD +
Sbjct: 639 QLGPVVICKKAAIAGLSQSLFERLVLLGIRPFRLQVQYRMHPVLSEFPSNVFYDGSL 695
Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 19/115 (16%)
Query: 209 LNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCF--TKASLIFCTAS 266
LN SQ QAV L R + LI GPPGTGKT + ++ T+ +++ C+ S
Sbjct: 446 LNSSQMQAVKQVLTRP-------LSLIQGPPGTGKTVVSATIVYHLVQKTEGNVLVCSPS 498
Query: 267 S------SYKLHRVAMEQLKFLVIDEAAQLKEVESAIPLKLPGIQHAILIGDECQ 315
+ + K+H+ ++ ++ A + E+ +P Q ++ G E Q
Sbjct: 499 NIAVDHLAEKIHKTGLKVVRLC----ARSREHSETTVPYLTLQHQLKVMGGAELQ 549
>sp|P32644|ECM32_YEAST Putative ATP-dependent RNA helicase ECM32 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ECM32 PE=1
SV=1
Length = 1121
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 13/176 (7%)
Query: 256 TKASLIFCTASSSYKLHRVAMEQLKFLVIDEAAQLKEVESAIPLKLPGIQHAILIGDECQ 315
+++ +IF T ++ +++ +++DEA Q E + +PL LPGI++ + +GDE Q
Sbjct: 791 SQSQIIFTTNIAAGGRELKVIKECPVVIMDEATQSSEASTLVPLSLPGIRNFVFVGDEKQ 850
Query: 316 LPAMVESSVSGEACLGRSLFERLSNLGQAKH--LLSIQYRMHPSISSFPNSYFYDNKIFD 373
L SS S L SLFER+ + G K+ +L QYRMHP IS FP Y+ ++ D
Sbjct: 851 L-----SSFSNIPQLETSLFERVLSNGTYKNPLMLDTQYRMHPKISEFPIKKIYNGELKD 905
Query: 374 SPNVKEKNYEKRFLPGRMY----GPYSFINVLDGREESIAHSYRNMVEVFVVMKIL 425
++K + P Y GP S V + + + +Y N E ++KI+
Sbjct: 906 GVTDEQKAWPGVQHPLFFYQCDLGPES--RVRSTQRDIVGFTYENKHECVEIVKII 959
Score = 35.0 bits (79), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 15/87 (17%)
Query: 206 SSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTK--ASLIFC 263
S LN SQ AV L + + ++ GPPGTGKT T+ ++ + A I C
Sbjct: 646 SDKLNRSQKTAVEHVLNNS-------ITILQGPPGTGKTSTIEEIIIQVIERFHAFPILC 698
Query: 264 TASSSYKLHRVA---ME---QLKFLVI 284
A+S+ + +A ME Q+K L I
Sbjct: 699 VAASNIAIDNIAEKIMENRPQIKILRI 725
>sp|Q9HEH1|RENT1_NEUCR Regulator of nonsense transcripts 1 homolog OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=2E4.130 PE=3 SV=1
Length = 1093
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 89/176 (50%), Gaps = 4/176 (2%)
Query: 258 ASLIFCTASSSYKLHRVAMEQLKFLVIDEAAQLKEVESAIPLKLPGIQHAILIGDECQLP 317
A ++ CT + R++ + + ++IDE+ Q E E IPL L G + +L+GD QL
Sbjct: 595 ADVVCCTCVGAGD-PRLSKMKFRNVLIDESTQSAEPECMIPLVL-GCKQVVLVGDHKQLG 652
Query: 318 AMVESSVSGEACLGRSLFERLSNLGQAKHLLSIQYRMHPSISSFPNSYFYDNKIFDSPNV 377
++ + + +A L +SLFERL L L +QYRMHP +S FP++ FY+ + +
Sbjct: 653 PVIMNKKAAKAGLNQSLFERLVKLQFTPIRLKVQYRMHPCLSEFPSNMFYEGSLQNGVTA 712
Query: 378 KEKNYEKRFLPGRMY-GPYSFINVLDGREESIAH-SYRNMVEVFVVMKILLNLYKV 431
E+ + P + P F + L E S + SY N E V KI+ +K
Sbjct: 713 AERLRKDVDFPWPVPETPMMFWSNLGNEEISASGTSYLNRTEAANVEKIVTRFFKA 768
>sp|Q6ZU11|YD002_HUMAN Uncharacterized protein FLJ44066 OS=Homo sapiens PE=2 SV=1
Length = 926
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 79/156 (50%), Gaps = 8/156 (5%)
Query: 276 MEQLKF--LVIDEAAQLKEVESAIPLKLPGIQHAILIGDECQLPAMVESS-VSGEACLGR 332
M LKF +V+DE +Q+ E S +P+ + IL+GD QLP ++ S + E L +
Sbjct: 620 MNDLKFPVVVLDECSQITEPASLLPIARFECEKLILVGDPKQLPPTIQGSDAAHENGLEQ 679
Query: 333 SLFERLSNLGQAKHLLSIQYRMHPSISSFPNSYFYDNKIFDSPNVKEKNYEKRFLPGRMY 392
+LF+RL +G LL QYR HP+IS+ N FY + + E++ +LP
Sbjct: 680 TLFDRLCLMGHKPILLRTQYRCHPAISAIANDLFYKGALMNGVTEIERSPLLEWLPT--- 736
Query: 393 GPYSFINVLDGREESIAHSYRNMVEVFVVMKILLNL 428
F NV + +S+ N+ E +K++ +L
Sbjct: 737 --LCFYNVKGLEQIERDNSFHNVAEATFTLKLIQSL 770
>sp|Q98TR3|RENT1_TAKRU Putative regulator of nonsense transcripts 1 OS=Takifugu rubripes
GN=rent1 PE=3 SV=1
Length = 1097
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 9/178 (5%)
Query: 258 ASLIFCTASSSYKLHRVAMEQLKFLVIDEAAQLKEVESAIPLKLPGIQHAILIGDECQLP 317
A +I+CT + R+A Q + ++IDE+ Q E + P++L Q +++G+
Sbjct: 592 ADVIWCTCVRAGD-PRLAKMQFRSILIDESTQATEPKCIGPVELGAKQ--LILGEITASW 648
Query: 318 AMVESSVSGEACLGRSLFERLSNLGQAKHLLSIQYRMHPSISSFPNSYFYDNKIFDSPNV 377
+ V + +A L +SLFERL LG L +QYRMHP++S+FP++ FY+ + + V
Sbjct: 649 SCVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQN--GV 706
Query: 378 KEKNYEKRFLPGRMYGPYS--FINVLDGREE--SIAHSYRNMVEVFVVMKILLNLYKV 431
+ K+ + P F V G+EE S SY N E V KI L K
Sbjct: 707 TAGDRIKKGFDFQWPQPEKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKA 764
>sp|A2AKX3|SETX_MOUSE Probable helicase senataxin OS=Mus musculus GN=Setx PE=2 SV=1
Length = 2646
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 76/155 (49%), Gaps = 16/155 (10%)
Query: 282 LVIDEAAQLKEVESAIPLKLPGIQHAILIGDECQLPAMVESSVSGEACLGRSLFERLSNL 341
+++DEA Q EVE+ PL + IL+GD QLP V S + E +S+ R L
Sbjct: 2154 VIVDEAGQSCEVETLSPL-IHRCNKLILVGDPKQLPPTVISMKAQEYGYDQSMMARFCKL 2212
Query: 342 ----------GQAKHL-LSIQYRMHPSISSFPNSYFYDNKIFDSPNVKEKNYEKRFLPGR 390
G+ L L+IQYRMHP I FP++Y Y NK + + E P
Sbjct: 2213 LEENVEQNMIGRLPVLQLTIQYRMHPDICLFPSNYVY-NKNLKTNRLTESIRCSSEWP-- 2269
Query: 391 MYGPYSFINVLDGREESIAHSYRNMVEVFVVMKIL 425
+ PY +V DG E SY N+ E+ +VM+I+
Sbjct: 2270 -FQPYLVFDVGDGSERRDNDSYINVQEIKLVMEII 2303
>sp|O94247|HCS1_SCHPO DNA polymerase alpha-associated DNA helicase A
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hcs1 PE=3 SV=1
Length = 660
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 75/145 (51%), Gaps = 24/145 (16%)
Query: 243 KTKTVSMLLDFCFTKASLIFCTASSSYKLHRVAMEQLK-----FLVIDEAAQLKEVESAI 297
+ KTV+ ++ + + ++FCT LH QLK ++IDEA+Q E + I
Sbjct: 352 EAKTVANIV----SASKVVFCT------LHGAGSRQLKGQRFDAVIIDEASQALEPQCWI 401
Query: 298 PLKLPGIQHAILIGDECQLPAMVESSVSGEACLGRSLFERL--SNLGQAKHLLSIQYRMH 355
PL G+ IL GD QL V+S S+FERL S K L+IQYRMH
Sbjct: 402 PLL--GMNKVILAGDHMQLSPNVQSKRPY-----ISMFERLVKSQGDLVKCFLNIQYRMH 454
Query: 356 PSISSFPNSYFYDNKIFDSPNVKEK 380
IS FP+ FYD+K+ + VK++
Sbjct: 455 ELISKFPSDTFYDSKLVPAEEVKKR 479
>sp|Q7Z333|SETX_HUMAN Probable helicase senataxin OS=Homo sapiens GN=SETX PE=1 SV=4
Length = 2677
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 74/155 (47%), Gaps = 16/155 (10%)
Query: 282 LVIDEAAQLKEVESAIPLKLPGIQHAILIGDECQLPAMVESSVSGEACLGRSLFERLSNL 341
+++DEA Q E+E+ PL + IL+GD QLP V S + E +S+ R L
Sbjct: 2178 VIVDEAGQSCEIETLTPL-IHRCNKLILVGDPKQLPPTVISMKAQEYGYDQSMMARFCRL 2236
Query: 342 GQ--AKH---------LLSIQYRMHPSISSFPNSYFYDNKIFDSPNVKEKNYEKRFLPGR 390
+ +H L++QYRMHP I FP++Y Y+ + + R
Sbjct: 2237 LEENVEHNMISRLPILQLTVQYRMHPDICLFPSNYVYNRNL----KTNRQTEAIRCSSDW 2292
Query: 391 MYGPYSFINVLDGREESIAHSYRNMVEVFVVMKIL 425
+ PY +V DG E SY N+ E+ +VM+I+
Sbjct: 2293 PFQPYLVFDVGDGSERRDNDSYINVQEIKLVMEII 2327
>sp|Q9BYK8|HELZ2_HUMAN Helicase with zinc finger domain 2 OS=Homo sapiens GN=HELZ2 PE=1 SV=6
Length = 2649
Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 9/110 (8%)
Query: 263 CTASSSYKLHRVAMEQLKFLVIDEAAQLKEVESAIPL-KLPGIQHAILIGDECQLPAMVE 321
C AS+S K+ V + +++DEA E E+ IPL + P + +L+GD QL +V+
Sbjct: 2343 CAASASLKILDV-----RQILVDEAGMATEPETLIPLVQFPQAEKVVLLGDHKQLRPVVK 2397
Query: 322 SSVSGEACLGRSLFERLSNLGQAKHLLSIQYRMHPSISSFPNSYFYDNKI 371
+ L RSLFER + H+L QYRMH I +FP+ FY +K+
Sbjct: 2398 NERLQNLGLDRSLFERYH---EDAHMLDTQYRMHEGICAFPSVAFYKSKL 2444
>sp|Q57568|Y104_METJA Uncharacterized ATP-dependent helicase MJ0104 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0104 PE=3 SV=1
Length = 663
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 86/172 (50%), Gaps = 22/172 (12%)
Query: 282 LVIDEAAQLKEVESAIPLKLPGIQHAILIGDECQLPAMVESSVSGEACLGRSLFERL-SN 340
+VIDE +Q E IP+ + G + I+ GD QLP V +S L ++LFERL
Sbjct: 398 IVIDEGSQAMEPSCLIPI-VKG-RKLIMAGDHKQLPPTV---LSENEELKKTLFERLIKK 452
Query: 341 LGQAKHLLSIQYRMHPSISSFPNSYFYDNKIFDSPNVK-----------EKNYEKRFLPG 389
+ +L IQYRM+ I FPN FY+NK+ +VK E + R +
Sbjct: 453 YPEFSSILEIQYRMNEKIMEFPNKMFYNNKLKADESVKNITLLDLVKEEEIDEVDRDIIN 512
Query: 390 RMYGPYSFINVLDG--REESIAHSYRNMVEVFVVMKILLNLYKVHNVSNLCS 439
+ P FINV +G R++ + SY N+ E V++I+ L K +N+ +
Sbjct: 513 EI--PVQFINV-EGIERKDKESPSYYNIEEAEKVLEIVKKLVKYKIPTNVIT 561
>sp|Q60560|SMBP2_MESAU DNA-binding protein SMUBP-2 OS=Mesocricetus auratus GN=IGHMBP2 PE=1
SV=1
Length = 989
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 62/129 (48%), Gaps = 9/129 (6%)
Query: 255 FTKASLIFCT---ASSSYKLHRVAMEQLKFLVIDEAAQLKEVESAIPL-KLPGIQHAILI 310
T A ++ T ASS L + +V+DE AQ E IPL K P IL
Sbjct: 341 LTAADVVLATNTGASSDGPLKLLPENHFDVVVVDECAQALEASCWIPLLKAP---KCILA 397
Query: 311 GDECQLPAMVESSVSGEACLGRSLFERL--SNLGQAKHLLSIQYRMHPSISSFPNSYFYD 368
GD QLP S + A L RSL ERL + A +L++QYRMH +I+ + + Y
Sbjct: 398 GDHRQLPPTTISHKAALAGLSRSLMERLVEKHGAGAVRMLTVQYRMHQAITRWASEAMYH 457
Query: 369 NKIFDSPNV 377
++ P+V
Sbjct: 458 GQLTAHPSV 466
Score = 37.7 bits (86), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Query: 206 SSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTA 265
++ L+ SQ +AV L + V +I GPPGTGKT TV ++ + I C A
Sbjct: 188 NTALDPSQKEAVSFALAQKE------VAIIHGPPGTGKTTTVVEIILQAVKQGLKILCCA 241
Query: 266 SSSYK----LHRVAMEQLKFLVIDEAAQLKE 292
S+ + R+A+ + + L + A+L E
Sbjct: 242 PSNVAVDNLVERLALCKKRILRLGHPARLLE 272
>sp|P40694|SMBP2_MOUSE DNA-binding protein SMUBP-2 OS=Mus musculus GN=Ighmbp2 PE=1 SV=1
Length = 993
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 61/129 (47%), Gaps = 9/129 (6%)
Query: 255 FTKASLIFCT---ASSSYKLHRVAMEQLKFLVIDEAAQLKEVESAIPL-KLPGIQHAILI 310
T A ++ T ASS L + + +V+DE AQ E IPL K P IL
Sbjct: 341 LTAADVVLATNTGASSDGPLKLLPEDYFDVVVVDECAQALEASCWIPLLKAP---KCILA 397
Query: 311 GDECQLPAMVESSVSGEACLGRSLFERLSNLGQAK--HLLSIQYRMHPSISSFPNSYFYD 368
GD QLP S + A L RSL ERL+ A +L++QYRMH +I + + Y
Sbjct: 398 GDHRQLPPTTVSHRAALAGLSRSLMERLAEKHGAGVVRMLTVQYRMHQAIMCWASEAMYH 457
Query: 369 NKIFDSPNV 377
+ P+V
Sbjct: 458 GQFTSHPSV 466
Score = 37.0 bits (84), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 13/97 (13%)
Query: 203 PSLS---STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTKAS 259
P LS +TL+ SQ +AV L + + +I GPPGTGKT TV ++ +
Sbjct: 182 PPLSFYNTTLDLSQKEAVSFALAQKE------LAIIHGPPGTGKTTTVVEIILQAVKQGL 235
Query: 260 LIFCTASSSYK----LHRVAMEQLKFLVIDEAAQLKE 292
+ C A S+ + R+A+ + + L + A+L E
Sbjct: 236 KVLCCAPSNIAVDNLVERLALCKKRILRLGHPARLLE 272
>sp|Q9EQN5|SMBP2_RAT DNA-binding protein SMUBP-2 OS=Rattus norvegicus GN=Ighmbp2 PE=1
SV=1
Length = 988
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 63/129 (48%), Gaps = 9/129 (6%)
Query: 255 FTKASLIFCT---ASSSYKLHRVAMEQLKFLVIDEAAQLKEVESAIPL-KLPGIQHAILI 310
+ A ++ T AS+ L + + +V+DE AQ E IPL K P IL
Sbjct: 341 LSAADVVLATNTGASTDGPLKLLPEDYFDVVVVDECAQALEASCWIPLLKAP---KCILA 397
Query: 311 GDECQLPAMVESSVSGEACLGRSLFERLSNLGQAK--HLLSIQYRMHPSISSFPNSYFYD 368
GD QLP S + A L RSL ERL+ A +L++QYRMH +I+ + + Y
Sbjct: 398 GDHKQLPPTTVSHKAALAGLSRSLMERLAEKHGAAVVRMLAVQYRMHQAITRWASEAMYH 457
Query: 369 NKIFDSPNV 377
++ P+V
Sbjct: 458 GQLTAHPSV 466
Score = 38.5 bits (88), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 206 SSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTA 265
++TL+ SQ +AV L + V +I GPPGTGKT TV ++ + + C A
Sbjct: 188 NTTLDPSQKEAVSFALAQKE------VAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCA 241
Query: 266 SSSYK----LHRVAMEQLKFLVIDEAAQLKE 292
S+ + R+A+ + + L + A+L E
Sbjct: 242 PSNIAVDNLVERLALCKKQILRLGHPARLLE 272
>sp|Q5ZKG3|DNA2_CHICK DNA replication ATP-dependent helicase/nuclease DNA2 OS=Gallus
gallus GN=DNA2 PE=2 SV=2
Length = 992
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 277 EQLKFLVIDEAAQLKEVESAIPLKLPGIQHAILIGDECQLPAMVESSVSGEACLGRSLFE 336
+Q F ++DEA+Q+ + PL + +L+GD QLP +V++S + + + SLF+
Sbjct: 723 KQFDFCIVDEASQISQPICLGPLFCS--KRFVLVGDHQQLPPLVQNSEARDLGMSESLFK 780
Query: 337 RLSNLGQAKHLLSIQYRMHPSISSFPNSYFYDNKI 371
RL A L++QYRM+ I S N Y+ K+
Sbjct: 781 RLEQNQNAVVQLTVQYRMNSKIMSLSNKLVYEGKL 815
>sp|Q8QHA5|DNA2_XENLA DNA replication ATP-dependent helicase/nuclease DNA2 OS=Xenopus
laevis GN=dna2 PE=1 SV=1
Length = 1053
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 281 FLVIDEAAQLKEVESAIPLKLPGIQHAILIGDECQLPAMVESSVSGEACLGRSLFERLSN 340
F ++DEA+Q+ + PL +L+GD QLP +V+S+ + E + SLF+RL
Sbjct: 759 FCIVDEASQISQPICLGPLFFA--DRFVLVGDHQQLPPLVKSAEARELGMSESLFKRLER 816
Query: 341 LGQAKHLLSIQYRMHPSISSFPNSYFYDNKI 371
+A L++QYRM+ I + N Y+ ++
Sbjct: 817 NQEAVVQLTVQYRMNSKIMALSNKLVYEGRL 847
>sp|E1BMP7|DNA2_BOVIN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Bos taurus
GN=DNA2 PE=3 SV=3
Length = 1061
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 18/127 (14%)
Query: 281 FLVIDEAAQLKEVESAIPLKLPGIQHAILIGDECQLPAMVESSVSGEACLGRSLFERLSN 340
F ++DEA+Q+ + PL + +L+GD QLP +V + + + SLF+RL
Sbjct: 758 FCIVDEASQISQPVCLGPLFFS--RRFVLVGDHQQLPPLVLNREARALGMSESLFKRLEQ 815
Query: 341 LGQAKHLLSIQYRMHPSISSFPNSYFYD-----------NKIFDSPNVKEKNYEKRFLPG 389
A L++QYRM+ I S N Y+ N + + PN K+ E F
Sbjct: 816 NKNAVVQLTVQYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLPNFKDVKLELEF--- 872
Query: 390 RMYGPYS 396
Y YS
Sbjct: 873 --YADYS 877
>sp|P51530|DNA2_HUMAN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Homo
sapiens GN=DNA2 PE=1 SV=3
Length = 1060
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 281 FLVIDEAAQLKEVESAIPLKLPGIQHAILIGDECQLPAMVESSVSGEACLGRSLFERLSN 340
F ++DEA+Q+ + PL + +L+GD QLP +V + + + SLF+RL
Sbjct: 758 FCIVDEASQISQPICLGPLFFS--RRFVLVGDHQQLPPLVLNREARALGMSESLFKRLEQ 815
Query: 341 LGQAKHLLSIQYRMHPSISSFPNSYFYDNKI 371
A L++QYRM+ I S N Y+ K+
Sbjct: 816 NKSAVVQLTVQYRMNSKIMSLSNKLTYEGKL 846
>sp|D3ZG52|DNA2_RAT DNA replication ATP-dependent helicase/nuclease DNA2 OS=Rattus
norvegicus GN=Dna2 PE=3 SV=1
Length = 1059
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 281 FLVIDEAAQLKEVESAIPLKLPGIQHAILIGDECQLPAMVESSVSGEACLGRSLFERLSN 340
F ++DEA+Q+ + PL + +L+GD QLP +V + + + SLF+RL
Sbjct: 758 FCIVDEASQISQPICLGPLFFS--RRFVLVGDHKQLPPLVLNREARALGMSESLFKRLER 815
Query: 341 LGQAKHLLSIQYRMHPSISSFPNSYFYDNKI 371
A L+IQYRM+ I S N Y+ K+
Sbjct: 816 NESAVVQLTIQYRMNRKIMSLSNKLTYEGKL 846
>sp|Q6ZQJ5|DNA2_MOUSE DNA replication ATP-dependent helicase/nuclease DNA2 OS=Mus
musculus GN=Dna2 PE=2 SV=2
Length = 1062
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 281 FLVIDEAAQLKEVESAIPLKLPGIQHAILIGDECQLPAMVESSVSGEACLGRSLFERLSN 340
F ++DEA+Q+ + PL + +L+GD QLP +V + + + SLF+RL
Sbjct: 759 FCIVDEASQISQPVCLGPLFFS--RRFVLVGDHQQLPPLVVNREARALGMSESLFKRLER 816
Query: 341 LGQAKHLLSIQYRMHPSISSFPNSYFYDNKI 371
A L++QYRM+ I S N Y K+
Sbjct: 817 NESAVVQLTVQYRMNRKIMSLSNKLTYAGKL 847
>sp|Q6NYU2|HELZ_DANRE Probable helicase with zinc finger domain OS=Danio rerio GN=helz
PE=2 SV=1
Length = 1860
Score = 48.1 bits (113), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 87/184 (47%), Gaps = 17/184 (9%)
Query: 260 LIFCTASSSYKLHRVAMEQLKF--LVIDEAAQLKEVESAIPLKLP-GIQHAILIGDECQL 316
++ T S+S L ++ +E F +++DEAAQ E E+ +PL L +L GD QL
Sbjct: 760 VVVVTLSTSQYLCQLDLEPGIFTHILLDEAAQAMECETIMPLALAVKSTRVVLAGDHMQL 819
Query: 317 PAMVESSVSGEACLGRSLFERLSNLGQAKH----LLSIQYRMHPSISSFPNSYFYDNKIF 372
V S + E L SL +RL +++ LL YR H +I ++ + FY+ K+
Sbjct: 820 SPFVYSEFARERNLHVSLLDRLYEHYPSEYPCRILLCENYRSHEAIINYTSDLFYEGKLM 879
Query: 373 DSPNVKEKNYEKRFLPGRMYGPYSFINVL-DGREESIAHSYRNMVEVFVVMKILLNLYKV 431
S + P + + P +F + +E + +Y N EVF +++ + + K
Sbjct: 880 AS---------GKQPPHKDFYPLTFFTARGEDVQEKNSTAYYNNAEVFEIVERVEEMRKK 930
Query: 432 HNVS 435
VS
Sbjct: 931 WPVS 934
>sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3
Length = 993
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 64/140 (45%), Gaps = 9/140 (6%)
Query: 255 FTKASLIFCT---ASSSYKLHRVAMEQLKFLVIDEAAQLKEVESAIPLKLPGIQHAILIG 311
T A+++ T AS+ L + +VIDE AQ E IPL + IL G
Sbjct: 342 LTSANVVLATNTGASADGPLKLLPESYFDVVVIDECAQALEASCWIPLL--KARKCILAG 399
Query: 312 DECQLPAMVESSVSGEACLGRSLFERLSNLGQAK--HLLSIQYRMHPSISSFPNSYFYDN 369
D QLP S + A L SL ERL+ A+ L++QYRMH +I + + Y
Sbjct: 400 DHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVVRTLTVQYRMHQAIMRWASDTMYLG 459
Query: 370 KIFDSPNVKEKNYEKRFLPG 389
++ +V + R LPG
Sbjct: 460 QLTAHSSV--ARHLLRDLPG 477
Score = 37.7 bits (86), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
Query: 209 LNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASSS 268
L+ SQ +AVL L + + +I GPPGTGKT TV ++ + + C A S+
Sbjct: 192 LDTSQKEAVLFAL------SQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSN 245
Query: 269 YK----LHRVAMEQLKFLVIDEAAQLKE 292
+ R+A+ + + L + A+L E
Sbjct: 246 IAVDNLVERLALCKQRILRLGHPARLLE 273
>sp|P38859|DNA2_YEAST DNA replication ATP-dependent helicase/nuclease DNA2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DNA2 PE=1 SV=1
Length = 1522
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 53/95 (55%), Gaps = 9/95 (9%)
Query: 281 FLVIDEAAQLKEVESAIPLKLPGIQHA---ILIGDECQLPAMVESSVSGEACLGRSLFER 337
++++DEA+Q+ ++P+ L +++ I++GD QLP +V++ + L SLF+
Sbjct: 1182 YVILDEASQI-----SMPVALGPLRYGNRFIMVGDHYQLPPLVKNDAARLGGLEESLFKT 1236
Query: 338 L-SNLGQAKHLLSIQYRMHPSISSFPNSYFYDNKI 371
++ L++QYRM I + N YDNK+
Sbjct: 1237 FCEKHPESVAELTLQYRMCGDIVTLSNFLIYDNKL 1271
>sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=1
SV=1
Length = 1002
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 14/188 (7%)
Query: 254 CFTKASLIFCTASSSYKLHRVAMEQLKF--LVIDEAAQLKEVESAIPLKLPGIQHAILI- 310
T+ L+ T S+ L+ + + F +++DEA Q E E+ I + + +++
Sbjct: 512 ALTRYKLVVSTYMSASLLNAEGVNRGHFTHILLDEAGQASEPENMIAVSNLCLTETVVVL 571
Query: 311 -GDECQLPAMVESSVSGEACLGRSLFERLSNL-----GQAKHLLSI--QYRMHPSISSFP 362
GD QL ++ S + LG+S ERL G ++ + YR HP I P
Sbjct: 572 AGDPRQLGPVIYSRDAESLGLGKSYLERLFECDYYCEGDENYVTKLVKNYRCHPEILDLP 631
Query: 363 NSYFYDNKIFDSPNVKEKNYEK-RFLPGRMYGPYSFINVLDGRE-ESIAHSYRNMVEVFV 420
+ FYD ++ S + FLP + + P F + E E S+ N +E+
Sbjct: 632 SKLFYDGELVASKEDTDSVLASLNFLPNKEF-PMVFYGIQGCDEREGNNPSWFNRIEISK 690
Query: 421 VMKILLNL 428
V++ + L
Sbjct: 691 VIETIKRL 698
>sp|Q1LXK4|M10B1_DANRE Putative helicase mov-10-B.1 OS=Danio rerio GN=mov10b.1 PE=2 SV=2
Length = 1013
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 83/192 (43%), Gaps = 27/192 (14%)
Query: 260 LIFCTASSSYKL--HRVAMEQLKFLVIDEAAQLKEVESAIPLKLPGIQHA-----ILIGD 312
++ CT ++ +L + + +DEA VE I + + G+ +A +L GD
Sbjct: 645 IVVCTLVTAGRLVSGGFPVGHFSHIFVDEAGHA--VEPEIVISVAGLLNAETGQLVLAGD 702
Query: 313 ECQLPAMVESSVSGEACLGRSLFERLSNLGQ-------------AKHLLSIQYRMHPSIS 359
QL ++ S + + LG SL ERL + LL YR HPSI
Sbjct: 703 PKQLGPILRSPFAIKYGLGLSLLERLMTQNELYQKGDTGFDNRYVTKLLQ-NYRSHPSIL 761
Query: 360 SFPNSYFYDNKIFD-SPNVKEKNYEK-RFLPGRMYGPYSFINVLDGRE-ESIAHSYRNMV 416
PN FYDN++ + + + Y LP R + P F V+ E ES + S+ N
Sbjct: 762 KVPNELFYDNELKACADEISSRQYCTWEHLPKRGF-PVIFHGVVGKDERESTSPSFFNTS 820
Query: 417 EVFVVMKILLNL 428
E+ +M L L
Sbjct: 821 EIDKIMDYLKKL 832
>sp|P42694|HELZ_HUMAN Probable helicase with zinc finger domain OS=Homo sapiens GN=HELZ
PE=1 SV=2
Length = 1942
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 64/126 (50%), Gaps = 9/126 (7%)
Query: 257 KASLIFCTASSSYKLHRVAMEQLKF--LVIDEAAQLKEVESAIPLKLPGIQHA--ILIGD 312
K ++ T ++S L ++ +E F +++DEAAQ E E+ +PL L Q+ +L GD
Sbjct: 764 KHRVVVVTLNTSQYLCQLDLEPGFFTHILLDEAAQAMECETIMPLAL-ATQNTRIVLAGD 822
Query: 313 ECQLPAMVESSVSGEACLGRSLFERLSNLGQAKH----LLSIQYRMHPSISSFPNSYFYD 368
QL V S + E L SL +RL A+ LL YR H +I ++ + FY+
Sbjct: 823 HMQLSPFVYSEFARERNLHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYTSELFYE 882
Query: 369 NKIFDS 374
K+ S
Sbjct: 883 GKLMAS 888
>sp|Q6DFV5|HELZ_MOUSE Probable helicase with zinc finger domain OS=Mus musculus GN=Helz
PE=1 SV=2
Length = 1964
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 62/125 (49%), Gaps = 7/125 (5%)
Query: 257 KASLIFCTASSSYKLHRVAMEQLKF--LVIDEAAQLKEVESAIPLKLPGIQHAI-LIGDE 313
K ++ T S+S L ++ +E F +++DEAAQ E E+ +PL L I L GD
Sbjct: 764 KHRVVVVTLSTSQYLCQLDLEPGFFTHVLLDEAAQAMECETIMPLALATKNTRIVLAGDH 823
Query: 314 CQLPAMVESSVSGEACLGRSLFERLSNLGQAKH----LLSIQYRMHPSISSFPNSYFYDN 369
QL V S + E L SL +RL A+ LL YR H +I ++ + FY+
Sbjct: 824 MQLSPFVYSEFARERNLHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEG 883
Query: 370 KIFDS 374
K+ S
Sbjct: 884 KLMAS 888
>sp|P34243|HCS1_YEAST DNA polymerase alpha-associated DNA helicase A OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HCS1 PE=1
SV=1
Length = 683
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 282 LVIDEAAQLKEVESAIPLKLPGIQHA------ILIGDECQLPAMVESSVSGEAC--LGRS 333
L+IDE +Q E + IPL I H +L GD QLP +++ L +
Sbjct: 392 LIIDEVSQAMEPQCWIPL----IAHQNQFHKLVLAGDNKQLPPTIKTEDDKNVIHNLETT 447
Query: 334 LFERLSNLGQAKHL---LSIQYRMHPSISSFPNSYFYDNKIFDSPNVKEK 380
LF+R+ + + + L++QYRM+ I FP+ Y+ K+ V +
Sbjct: 448 LFDRIIKIFPKRDMVKFLNVQYRMNQKIMEFPSHSMYNGKLLADATVANR 497
>sp|Q8CFQ3|AQR_MOUSE Intron-binding protein aquarius OS=Mus musculus GN=Aqr PE=2 SV=2
Length = 1481
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 19/190 (10%)
Query: 253 FCFTKASLIFCTASSSYKLHRVAMEQLKF----LVIDEAAQLKEVESAIPLKLPGIQHA- 307
+ K + I + L R + +L F ++++EAAQ+ E+E+ IPL L Q
Sbjct: 1030 YLLVKEAKIIAMTCTHAALKRHDLVKLGFKYDNILMEEAAQILEIETFIPLLLQNPQDGF 1089
Query: 308 ------ILIGDECQLPAMVES-SVSGEACLGRSLFERLSNLGQAKHLLSIQYRMHPSISS 360
I+IGD QLP ++++ + + + +SLF R +G L Q R S+ +
Sbjct: 1090 SRLKRWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRFVRVGVPTVDLDAQGRARASLCN 1149
Query: 361 FPNSYFYDNKIFDSPNVKEKNYEKRFLPGRMYGPYSFINVLD----GREESIAHSYRNMV 416
N + Y N + + P+V+ G +Y + INV D G E + Y+N+
Sbjct: 1150 LYN-WRYKN-LGNLPHVQLLPEFSTANAGLLYD-FQLINVEDFQGVGESEPNPYFYQNLG 1206
Query: 417 EVFVVMKILL 426
E V+ + +
Sbjct: 1207 EAEYVVALFM 1216
>sp|O60306|AQR_HUMAN Intron-binding protein aquarius OS=Homo sapiens GN=AQR PE=1 SV=4
Length = 1485
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 19/190 (10%)
Query: 253 FCFTKASLIFCTASSSYKLHRVAMEQLKF----LVIDEAAQLKEVESAIPLKLPGIQHA- 307
+ K + I + L R + +L F ++++EAAQ+ E+E+ IPL L Q
Sbjct: 1026 YLLVKEAKIIAMTCTHAALKRHDLVKLGFKYDNILMEEAAQILEIETFIPLLLQNPQDGF 1085
Query: 308 ------ILIGDECQLPAMVES-SVSGEACLGRSLFERLSNLGQAKHLLSIQYRMHPSISS 360
I+IGD QLP ++++ + + + +SLF R +G L Q R S+ +
Sbjct: 1086 SRLKRWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRFVRVGVPTVDLDAQGRARASLCN 1145
Query: 361 FPNSYFYDNKIFDSPNVKEKNYEKRFLPGRMYGPYSFINVLD----GREESIAHSYRNMV 416
N + Y N + + P+V+ G +Y + INV D G E + Y+N+
Sbjct: 1146 LYN-WRYKN-LGNLPHVQLLPEFSTANAGLLYD-FQLINVEDFQGVGESEPNPYFYQNLG 1202
Query: 417 EVFVVMKILL 426
E V+ + +
Sbjct: 1203 EAEYVVALFM 1212
>sp|Q9URU2|DNA2_SCHPO DNA replication ATP-dependent helicase/nuclease dna2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=dna2 PE=1 SV=2
Length = 1397
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 83/235 (35%), Gaps = 78/235 (33%)
Query: 200 IFGPSLSSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLL-------- 251
+ P LN+ Q A+ C H LI G PGTGKT T+S L+
Sbjct: 923 LIDPEFLKCLNEDQITALKKCHAAEH------YSLILGMPGTGKTTTISSLIRSLLAKKK 976
Query: 252 ----------------------------------------DFCFTKASLIFCTAS----- 266
+FC T+ + AS
Sbjct: 977 KILLTSFTHLAVDNILIKLKGCDSTIVRLGSPHKIHPLVKEFCLTEGTTFDDLASLKHFY 1036
Query: 267 --------SSYKLHRVAMEQLKF--LVIDEAAQLKEVESAIPLKLPGIQHA---ILIGDE 313
SS ++ + KF +IDEA+Q+ +P+ L +Q A +L+GD
Sbjct: 1037 EDPQIVACSSLGVYHSIFNKRKFDYCIIDEASQI-----PLPICLGPLQLAEKFVLVGDH 1091
Query: 314 CQLPAMVESS-VSGEACLGRSLFERLSNLGQAKHLLSIQYRMHPSISSFPNSYFY 367
QLP +V++S S + +A L +QYRM+ I+S + Y
Sbjct: 1092 YQLPPLVKNSRTSKDGLSLSLFKLLSEKHPEAVTTLRLQYRMNEDINSLSSELIY 1146
>sp|O74465|HRR1_SCHPO Helicase required for RNAi-mediated heterochromatin assembly 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hrr1 PE=1 SV=2
Length = 999
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Query: 258 ASLIFCTASSSYKLHRVAMEQL--KFLVIDEAAQLKEVESAIPLKLPGIQHAILIGDECQ 315
A++I T + K +R +E++ K I+EAA + E IP P ++ +LIGD Q
Sbjct: 683 ANVIGMTTTGLNK-YRDILERINPKICFIEEAADVLE-GPIIPAVFPSLEQLVLIGDHKQ 740
Query: 316 L-PAMVESSVSGEA-CLGRSLFERLSNLGQAKHLLSIQYRMHPSISSFPNSYFYD 368
L P ++ + L S+FERL L++Q RMHP I +S + D
Sbjct: 741 LRPGCSTYALRQDPFNLSISMFERLVENDMEYTRLTMQRRMHPQIRRLVSSVYED 795
>sp|Q5ZKD7|MOV10_CHICK Putative helicase MOV-10 OS=Gallus gallus GN=MOV10 PE=2 SV=1
Length = 967
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 88/237 (37%), Gaps = 38/237 (16%)
Query: 239 PGTGKTKTVSMLLDFCFTKASLIFCTASSSYKLHRVAMEQLKFLVIDEAAQLKEVESAI- 297
P K +L+ T L+ Y H + IDE E ES +
Sbjct: 601 PSKKLLKPYRILITTLVTAGRLVSANFPPGYFSH---------VFIDECGHAVEPESVVA 651
Query: 298 ---------PLKLPGIQHAILIGDECQLPAMVESSVSGEACLGRSLFERL---------S 339
P P +L GD QL + S ++ + LG SL ERL S
Sbjct: 652 IAGLLTTMDPDTNPNGGQLVLAGDPQQLGPVPRSPLAAQHGLGTSLLERLMLHNALYAKS 711
Query: 340 NLGQAKHLLSI---QYRMHPSISSFPNSYFYDNKI----FDSPNVKEKNYEKRFLPGRMY 392
+ G ++ YR H +I PN FYD+++ P+V+ LP R
Sbjct: 712 DEGYNPQFVTKLLWNYRSHKAILKVPNELFYDSELKAYEGSEPDVRNFYCTWEELPNRGV 771
Query: 393 GPYSFINVLDGRE-ESIAHSYRNMVEVFVVMKILLNLYKVHNVSNLCSSLMKKCINV 448
P F V E E+ + S+ N E+ VV++ L L + C ++ K I +
Sbjct: 772 -PIIFHGVCGEDEREAKSPSFFNTAEIEVVVQYLQKLLQSQGRRG-CPTISPKEIGI 826
>sp|Q8R151|ZNFX1_MOUSE NFX1-type zinc finger-containing protein 1 OS=Mus musculus GN=Znfx1
PE=2 SV=3
Length = 1909
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Query: 258 ASLIFCTASSSYKLHRVAME-QLKFLVIDEAAQLKEVESAIPLKLPGIQHAILIGDECQL 316
A ++ T + + K ++ + + + ++++EAA++ E + L QH ILIGD QL
Sbjct: 971 AEVVGMTTTGAAKYRQILQQVEPRIVIVEEAAEVLEAHTIATLS-KACQHLILIGDHQQL 1029
Query: 317 -PAMVESSVSGEACLGRSLFERLSNLGQAKHLLSIQYRMHPSISSFPNSYFYDNKIFDSP 375
P+ ++ L SLFERL + L+ Q+RM P I+ + Y + + + P
Sbjct: 1030 RPSANVYDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMRPEIARLLTPHIYQD-LENHP 1088
Query: 376 NV 377
+V
Sbjct: 1089 SV 1090
>sp|Q9P2E3|ZNFX1_HUMAN NFX1-type zinc finger-containing protein 1 OS=Homo sapiens GN=ZNFX1
PE=1 SV=2
Length = 1918
Score = 41.6 bits (96), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 66/129 (51%), Gaps = 6/129 (4%)
Query: 258 ASLIFCTASSSYKLHRVAME-QLKFLVIDEAAQLKEVESAIPLKLPGIQHAILIGDECQL 316
A ++ T + + K ++ + + + ++++EAA++ E + L QH ILIGD QL
Sbjct: 978 AQVVGMTTTGAAKYRQILQKVEPRIVIVEEAAEVLEAHTIATLS-KACQHLILIGDHQQL 1036
Query: 317 -PAMVESSVSGEACLGRSLFERLSNLGQAKHLLSIQYRMHPSISSFPNSYFYDNKIFDSP 375
P+ ++ L SLFERL + L+ Q+RM P I+ + Y + + + P
Sbjct: 1037 RPSANVYDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMCPEIARLLTPHIYQD-LENHP 1095
Query: 376 NVKEKNYEK 384
+V + YEK
Sbjct: 1096 SVLK--YEK 1102
>sp|P23249|MOV10_MOUSE Putative helicase MOV-10 OS=Mus musculus GN=Mov10 PE=1 SV=2
Length = 1004
Score = 40.4 bits (93), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 22/118 (18%)
Query: 275 AMEQLKFLVIDEAAQLKEVESAIPLKL---------PGIQHAILIGDECQLPAMVESSVS 325
++ + IDEA E ES + + PG Q +L GD QL ++ S ++
Sbjct: 636 PIDHFTHIFIDEAGHCMEPESLVAIAGLMDVKETGNPGGQ-LVLAGDPRQLGPVLRSPLA 694
Query: 326 GEACLGRSLFERL----------SNLGQAKHLLSI--QYRMHPSISSFPNSYFYDNKI 371
+ LG SL ERL N + + + YR HP+I PN +YD ++
Sbjct: 695 LKHGLGYSLLERLLAYNSLYKKGPNGYDPQFITKLLRNYRSHPTILDIPNQLYYDGEL 752
>sp|Q49WA6|ADDA_STAS1 ATP-dependent helicase/nuclease subunit A OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=addA PE=3 SV=1
Length = 1219
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 37/120 (30%)
Query: 929 FGAEQVILVRDDCVRKEISNYVGKQALVLTIVESKGLEFQVIHYTSQCCNSPFKH----- 983
FG E ++ DD VR ++TI SKGLEF + Y+ + F+
Sbjct: 763 FGEENIVGPNDDVVR------------MMTIHSSKGLEFPFVIYSG--LSRKFRRDDLHR 808
Query: 984 ------------ALFDSTSPGSFPSFNE------AKHNVLCSELKQLYVAITRTRQRLWI 1025
A +D S S+PS + A+ ++ E++ +YVA+TR +++L++
Sbjct: 809 PVILNQSYGLGMAYYDVESNLSYPSLSSVTYKAIAEKEMVSEEMRLIYVALTRAKEQLFL 868
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 707,319,225
Number of Sequences: 539616
Number of extensions: 30032039
Number of successful extensions: 84944
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 84650
Number of HSP's gapped (non-prelim): 275
length of query: 1939
length of database: 191,569,459
effective HSP length: 133
effective length of query: 1806
effective length of database: 119,800,531
effective search space: 216359758986
effective search space used: 216359758986
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 69 (31.2 bits)