Query 035724
Match_columns 1939
No_of_seqs 844 out of 3663
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 05:49:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035724.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035724hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1802 RNA helicase nonsense 100.0 3.3E-55 7.1E-60 525.5 30.3 434 3-491 231-841 (935)
2 KOG1803 DNA helicase [Replicat 100.0 4.3E-53 9.3E-58 511.7 23.5 438 12-491 3-633 (649)
3 TIGR00376 DNA helicase, putati 100.0 2.2E-48 4.8E-53 502.6 37.9 418 24-492 1-636 (637)
4 KOG1801 tRNA-splicing endonucl 100.0 7.6E-34 1.6E-38 375.3 15.0 486 2-499 24-822 (827)
5 KOG1805 DNA replication helica 100.0 1.5E-32 3.3E-37 344.6 13.9 270 207-488 668-1077(1100)
6 KOG1807 Helicases [Replication 100.0 3E-31 6.5E-36 324.2 23.2 229 254-490 695-980 (1025)
7 KOG3616 Selective LIM binding 100.0 1.9E-30 4.2E-35 311.0 19.6 290 1065-1375 709-1115(1636)
8 COG1112 Superfamily I DNA and 99.9 2.4E-21 5.2E-26 260.1 20.7 228 258-491 469-754 (767)
9 KOG1538 Uncharacterized conser 99.8 7.2E-20 1.6E-24 220.4 20.6 260 1033-1336 560-844 (1081)
10 KOG1804 RNA helicase [RNA proc 99.8 1.1E-20 2.3E-25 242.2 6.2 230 258-494 420-727 (775)
11 PF13086 AAA_11: AAA domain; P 99.8 1.2E-19 2.6E-24 207.4 9.3 65 256-322 169-235 (236)
12 KOG2041 WD40 repeat protein [G 99.7 7.2E-17 1.6E-21 196.0 22.6 269 1045-1334 673-948 (1189)
13 KOG3616 Selective LIM binding 99.7 6.4E-16 1.4E-20 187.5 19.1 265 1072-1371 563-863 (1636)
14 TIGR01447 recD exodeoxyribonuc 99.6 1.7E-15 3.6E-20 195.4 12.5 197 146-363 97-364 (586)
15 PF13604 AAA_30: AAA domain; P 99.6 1.9E-15 4.1E-20 171.0 10.4 150 208-372 1-179 (196)
16 PRK10875 recD exonuclease V su 99.6 2.9E-15 6.3E-20 193.4 12.8 159 146-322 101-310 (615)
17 PRK11054 helD DNA helicase IV; 99.6 3.5E-14 7.6E-19 186.1 17.7 174 845-1028 437-662 (684)
18 KOG1806 DEAD box containing he 99.5 3.7E-15 7.9E-20 188.7 6.1 177 256-435 966-1157(1320)
19 PRK11773 uvrD DNA-dependent he 99.5 4.8E-14 1E-18 188.0 15.4 61 954-1028 554-615 (721)
20 KOG3617 WD40 and TPR repeat-co 99.5 6.2E-13 1.3E-17 164.6 23.4 311 1059-1396 906-1263(1416)
21 PF13087 AAA_12: AAA domain; P 99.5 1.3E-14 2.7E-19 163.7 7.5 110 330-440 1-116 (200)
22 TIGR01448 recD_rel helicase, p 99.5 1.4E-13 3E-18 182.3 14.5 191 147-363 271-495 (720)
23 PRK13889 conjugal transfer rel 99.3 4.1E-12 8.8E-17 170.5 12.0 138 206-360 344-506 (988)
24 TIGR02768 TraA_Ti Ti-type conj 99.3 5.9E-12 1.3E-16 167.5 12.1 134 206-356 350-508 (744)
25 KOG3617 WD40 and TPR repeat-co 99.2 4E-10 8.7E-15 140.4 22.6 337 1033-1370 712-1112(1416)
26 PRK14712 conjugal transfer nic 99.2 1.9E-11 4.2E-16 168.4 12.0 143 206-363 833-1008(1623)
27 PRK13826 Dtr system oriT relax 99.2 2.5E-11 5.3E-16 163.6 11.5 134 207-357 380-538 (1102)
28 PRK13709 conjugal transfer nic 99.2 8.8E-11 1.9E-15 164.2 13.1 149 206-370 965-1146(1747)
29 TIGR02785 addA_Gpos recombinat 99.0 3.3E-10 7.2E-15 158.5 9.4 118 952-1073 781-919 (1232)
30 PF13361 UvrD_C: UvrD-like hel 99.0 1.1E-10 2.4E-15 141.5 4.1 62 952-1027 286-348 (351)
31 PF05970 PIF1: PIF1-like helic 99.0 5.1E-10 1.1E-14 138.4 8.7 114 208-322 1-159 (364)
32 TIGR02760 TraI_TIGR conjugativ 99.0 1.6E-09 3.5E-14 155.8 13.2 139 206-359 1017-1188(1960)
33 PRK10919 ATP-dependent DNA hel 99.0 2E-10 4.3E-15 152.1 3.6 63 952-1028 550-612 (672)
34 TIGR02760 TraI_TIGR conjugativ 99.0 2.2E-09 4.7E-14 154.6 12.9 138 206-358 427-601 (1960)
35 TIGR01075 uvrD DNA helicase II 98.9 5.9E-10 1.3E-14 149.3 4.5 63 952-1028 547-610 (715)
36 TIGR01073 pcrA ATP-dependent D 98.9 7.1E-10 1.5E-14 148.8 4.7 63 952-1028 548-611 (726)
37 KOG1538 Uncharacterized conser 98.9 5.3E-08 1.1E-12 119.7 18.2 192 1062-1265 630-838 (1081)
38 PRK13909 putative recombinatio 98.8 2.4E-09 5.2E-14 146.5 6.5 81 951-1031 605-704 (910)
39 COG1074 RecB ATP-dependent exo 98.8 2.8E-09 6E-14 148.1 4.3 91 939-1030 730-837 (1139)
40 TIGR01074 rep ATP-dependent DN 98.7 5.5E-09 1.2E-13 139.2 4.4 62 952-1027 550-611 (664)
41 TIGR02784 addA_alphas double-s 98.7 8.4E-09 1.8E-13 144.6 6.2 79 952-1030 774-875 (1141)
42 TIGR00609 recB exodeoxyribonuc 98.7 6.7E-09 1.5E-13 144.1 4.1 78 951-1028 650-736 (1087)
43 PF13538 UvrD_C_2: UvrD-like h 98.7 3.9E-09 8.4E-14 107.1 -0.2 50 953-1026 55-104 (104)
44 KOG2041 WD40 repeat protein [G 98.6 1.5E-06 3.2E-11 108.1 21.1 146 1069-1214 738-903 (1189)
45 PF01443 Viral_helicase1: Vira 98.6 4E-08 8.6E-13 113.7 6.5 124 234-365 2-141 (234)
46 PRK10876 recB exonuclease V su 98.6 1.7E-08 3.7E-13 140.5 3.8 74 952-1026 734-816 (1181)
47 KOG1920 IkappaB kinase complex 98.6 1E-06 2.2E-11 116.1 19.2 159 1117-1335 889-1052(1265)
48 TIGR00990 3a0801s09 mitochondr 98.5 2.4E-05 5.1E-10 103.9 27.4 55 1319-1373 518-577 (615)
49 PRK10536 hypothetical protein; 98.4 9.7E-07 2.1E-11 103.0 10.7 104 206-316 57-215 (262)
50 COG0210 UvrD Superfamily I DNA 98.4 6.6E-08 1.4E-12 128.8 0.7 64 953-1030 554-619 (655)
51 PF02562 PhoH: PhoH-like prote 98.4 9.9E-07 2.1E-11 100.4 10.0 103 207-316 3-158 (205)
52 PF14938 SNAP: Soluble NSF att 98.4 1.3E-05 2.7E-10 96.4 18.8 177 1069-1274 38-226 (282)
53 PF09848 DUF2075: Uncharacteri 98.3 9.2E-07 2E-11 109.4 8.7 133 231-372 2-185 (352)
54 TIGR01073 pcrA ATP-dependent D 98.3 1.9E-06 4.1E-11 116.2 12.3 137 278-440 209-348 (726)
55 TIGR00376 DNA helicase, putati 98.3 1.4E-06 3E-11 115.1 10.5 79 932-1030 529-610 (637)
56 PRK11773 uvrD DNA-dependent he 98.3 3.2E-06 7E-11 113.7 14.2 130 278-434 213-346 (721)
57 TIGR01075 uvrD DNA helicase II 98.3 3.7E-06 8E-11 113.2 14.2 132 277-434 207-341 (715)
58 PF14938 SNAP: Soluble NSF att 98.3 1E-05 2.3E-10 97.1 16.4 173 1119-1339 33-226 (282)
59 PF01443 Viral_helicase1: Vira 98.3 3.1E-07 6.6E-12 106.4 2.3 50 955-1026 184-233 (234)
60 COG3973 Superfamily I DNA and 98.3 3.4E-07 7.4E-12 113.8 2.7 147 842-1028 579-745 (747)
61 TIGR02917 PEP_TPR_lipo putativ 98.3 0.00015 3.2E-09 98.4 28.2 279 1063-1368 463-800 (899)
62 PRK10919 ATP-dependent DNA hel 98.1 3.3E-06 7.2E-11 112.5 8.3 83 278-367 207-292 (672)
63 TIGR02917 PEP_TPR_lipo putativ 98.1 0.00042 9E-09 94.0 26.7 278 1063-1367 395-732 (899)
64 KOG4626 O-linked N-acetylgluco 98.1 0.00018 4E-09 89.7 19.9 192 1147-1366 231-450 (966)
65 PRK11788 tetratricopeptide rep 98.0 0.0013 2.8E-08 81.9 27.8 23 1167-1189 145-167 (389)
66 KOG1586 Protein required for f 98.0 6.8E-05 1.5E-09 84.9 14.4 182 1067-1274 35-225 (288)
67 TIGR01074 rep ATP-dependent DN 98.0 3.1E-05 6.7E-10 103.8 13.7 83 278-367 206-291 (664)
68 COG2256 MGS1 ATPase related to 98.0 1.2E-05 2.5E-10 97.5 8.1 89 231-321 49-147 (436)
69 KOG0989 Replication factor C, 98.0 1E-05 2.2E-10 95.0 6.8 109 212-322 40-178 (346)
70 PRK11447 cellulose synthase su 97.9 0.0021 4.6E-08 91.5 30.3 284 1062-1367 300-666 (1157)
71 KOG4626 O-linked N-acetylgluco 97.9 0.00028 6E-09 88.2 18.0 189 1120-1329 251-493 (966)
72 PRK11054 helD DNA helicase IV; 97.9 1.8E-05 3.9E-10 105.1 8.4 82 278-366 430-516 (684)
73 PLN03081 pentatricopeptide (PP 97.9 0.003 6.4E-08 85.5 28.8 272 1064-1366 188-556 (697)
74 PLN03081 pentatricopeptide (PP 97.9 0.00079 1.7E-08 90.9 23.1 231 1064-1335 289-554 (697)
75 KOG1920 IkappaB kinase complex 97.8 0.00014 3.1E-09 96.6 14.2 97 1120-1216 951-1053(1265)
76 PRK14956 DNA polymerase III su 97.8 3.2E-05 6.9E-10 97.8 7.7 111 213-323 23-171 (484)
77 PRK11447 cellulose synthase su 97.8 0.0016 3.4E-08 92.9 25.2 275 1063-1370 383-703 (1157)
78 PLN03218 maturation of RBCL 1; 97.8 0.0029 6.3E-08 88.2 26.9 199 1141-1366 514-747 (1060)
79 PF13245 AAA_19: Part of AAA d 97.8 3.8E-05 8.3E-10 74.3 5.7 47 216-268 2-53 (76)
80 PRK10049 pgaA outer membrane p 97.7 0.0084 1.8E-07 82.0 29.2 204 1251-1466 279-514 (765)
81 COG0507 RecD ATP-dependent exo 97.7 7E-05 1.5E-09 100.9 9.2 110 205-321 316-451 (696)
82 PRK11788 tetratricopeptide rep 97.7 0.0056 1.2E-07 76.2 25.5 144 1063-1214 67-239 (389)
83 PRK08181 transposase; Validate 97.7 8.9E-05 1.9E-09 88.4 8.9 146 205-356 84-248 (269)
84 PLN03218 maturation of RBCL 1; 97.7 0.0032 7E-08 87.8 25.0 29 1063-1091 505-533 (1060)
85 PRK14958 DNA polymerase III su 97.7 6.2E-05 1.3E-09 97.2 7.6 106 215-323 26-169 (509)
86 KOG2076 RNA polymerase III tra 97.7 0.0029 6.3E-08 83.0 22.2 127 1062-1213 204-340 (895)
87 PF05496 RuvB_N: Holliday junc 97.7 6.3E-05 1.4E-09 86.2 6.4 81 231-313 51-137 (233)
88 KOG1803 DNA helicase [Replicat 97.7 9.5E-05 2.1E-09 93.2 8.5 79 933-1031 527-608 (649)
89 PRK15174 Vi polysaccharide exp 97.6 0.0089 1.9E-07 80.3 27.5 104 1251-1368 291-404 (656)
90 PRK12323 DNA polymerase III su 97.6 7.4E-05 1.6E-09 96.7 7.4 106 215-323 26-174 (700)
91 PF00580 UvrD-helicase: UvrD/R 97.6 0.0001 2.2E-09 88.8 8.2 66 719-815 1-67 (315)
92 PRK06526 transposase; Provisio 97.6 6.5E-05 1.4E-09 88.9 5.8 146 205-357 77-241 (254)
93 KOG1586 Protein required for f 97.6 0.0012 2.7E-08 75.0 15.0 166 1123-1336 29-222 (288)
94 PRK14949 DNA polymerase III su 97.6 0.00011 2.4E-09 97.9 7.6 95 228-322 36-168 (944)
95 PF13429 TPR_15: Tetratricopep 97.6 0.00018 4E-09 86.0 8.8 210 1062-1307 41-272 (280)
96 TIGR00990 3a0801s09 mitochondr 97.5 0.0054 1.2E-07 81.8 23.0 150 1065-1216 331-494 (615)
97 PRK14952 DNA polymerase III su 97.5 0.00015 3.2E-09 94.7 8.0 111 213-323 18-168 (584)
98 PRK07994 DNA polymerase III su 97.5 0.00015 3.2E-09 95.3 7.7 96 228-323 36-169 (647)
99 KOG1840 Kinesin light chain [C 97.5 0.0064 1.4E-07 78.2 22.1 232 1068-1333 202-474 (508)
100 PRK14961 DNA polymerase III su 97.5 0.00018 4E-09 89.6 8.3 110 213-322 21-168 (363)
101 PRK15174 Vi polysaccharide exp 97.5 0.0079 1.7E-07 80.8 24.1 277 1062-1367 73-381 (656)
102 PRK14962 DNA polymerase III su 97.5 0.00016 3.4E-09 92.7 7.5 95 229-323 35-167 (472)
103 KOG2028 ATPase related to the 97.5 0.00019 4.1E-09 85.4 7.1 101 213-319 149-263 (554)
104 KOG2076 RNA polymerase III tra 97.5 0.0048 1.1E-07 81.0 20.1 78 1310-1402 415-498 (895)
105 PRK07003 DNA polymerase III su 97.5 0.00023 5E-09 93.3 8.4 97 227-323 35-169 (830)
106 PLN03025 replication factor C 97.5 0.00038 8.2E-09 85.3 9.8 99 210-312 18-137 (319)
107 PF13401 AAA_22: AAA domain; P 97.5 0.00016 3.5E-09 76.0 5.8 84 230-313 4-125 (131)
108 KOG1585 Protein required for f 97.4 0.0013 2.9E-08 75.2 12.5 41 1166-1212 74-114 (308)
109 smart00487 DEXDc DEAD-like hel 97.4 0.00031 6.6E-09 77.6 7.6 39 207-251 7-45 (201)
110 PF04053 Coatomer_WDAD: Coatom 97.4 0.0033 7.2E-08 80.0 17.6 137 1122-1310 296-442 (443)
111 smart00382 AAA ATPases associa 97.4 0.00031 6.8E-09 72.8 7.0 66 230-295 2-95 (148)
112 PRK14960 DNA polymerase III su 97.4 0.00024 5.3E-09 92.3 7.3 94 228-321 35-166 (702)
113 PRK14957 DNA polymerase III su 97.4 0.00029 6.3E-09 91.2 8.0 110 213-322 21-168 (546)
114 PRK08451 DNA polymerase III su 97.4 0.00039 8.5E-09 89.7 9.1 97 227-323 33-167 (535)
115 PLN03077 Protein ECB2; Provisi 97.4 0.013 2.7E-07 81.3 24.4 223 1064-1309 353-651 (857)
116 PLN03077 Protein ECB2; Provisi 97.3 0.0075 1.6E-07 83.5 21.6 26 1067-1092 255-280 (857)
117 PRK14951 DNA polymerase III su 97.3 0.00035 7.7E-09 91.6 8.1 110 213-322 21-173 (618)
118 PRK08084 DNA replication initi 97.3 0.00076 1.6E-08 79.2 10.0 100 209-312 28-139 (235)
119 PRK14969 DNA polymerase III su 97.3 0.00041 8.9E-09 90.2 8.5 105 215-322 26-168 (527)
120 PRK14964 DNA polymerase III su 97.3 0.00035 7.7E-09 89.4 7.5 95 228-322 33-165 (491)
121 COG0210 UvrD Superfamily I DNA 97.3 0.00072 1.6E-08 90.7 10.8 132 277-434 212-347 (655)
122 PF04851 ResIII: Type III rest 97.3 0.00048 1E-08 76.1 7.4 44 208-251 3-46 (184)
123 PRK10875 recD exonuclease V su 97.3 0.00013 2.8E-09 95.9 3.2 54 952-1030 537-590 (615)
124 PRK05563 DNA polymerase III su 97.3 0.0005 1.1E-08 90.1 8.6 96 228-323 36-169 (559)
125 cd00009 AAA The AAA+ (ATPases 97.3 0.00094 2E-08 70.0 9.1 77 210-290 3-96 (151)
126 PRK09183 transposase/IS protei 97.3 0.00046 1E-08 82.1 7.4 146 204-356 80-246 (259)
127 PRK04195 replication factor C 97.2 0.00099 2.1E-08 86.2 10.2 82 209-292 18-112 (482)
128 COG1484 DnaC DNA replication p 97.2 0.00068 1.5E-08 80.5 8.0 82 210-292 85-181 (254)
129 PRK05896 DNA polymerase III su 97.2 0.00053 1.1E-08 89.1 7.4 95 228-322 36-168 (605)
130 TIGR01447 recD exodeoxyribonuc 97.2 0.00026 5.5E-09 92.9 4.5 54 952-1030 519-572 (586)
131 PRK07133 DNA polymerase III su 97.2 0.00067 1.4E-08 89.8 8.2 107 214-323 27-168 (725)
132 PRK14963 DNA polymerase III su 97.2 0.00091 2E-08 86.5 9.0 110 213-322 19-165 (504)
133 PRK07952 DNA replication prote 97.2 0.00097 2.1E-08 78.6 8.5 83 210-292 78-176 (244)
134 PF00270 DEAD: DEAD/DEAH box h 97.1 0.00097 2.1E-08 73.0 7.7 35 210-251 1-35 (169)
135 PF09848 DUF2075: Uncharacteri 97.1 0.006 1.3E-07 75.9 15.5 50 733-815 4-53 (352)
136 PRK06645 DNA polymerase III su 97.1 0.00083 1.8E-08 86.6 8.1 44 212-255 25-68 (507)
137 PF13429 TPR_15: Tetratricopep 97.1 0.002 4.2E-08 77.2 10.3 240 1066-1365 9-275 (280)
138 PRK12402 replication factor C 97.1 0.002 4.4E-08 79.0 10.5 43 210-256 20-62 (337)
139 TIGR00635 ruvB Holliday juncti 97.1 0.0015 3.3E-08 79.2 9.3 83 230-313 30-117 (305)
140 PRK14948 DNA polymerase III su 97.1 0.001 2.2E-08 87.9 8.3 93 230-322 38-170 (620)
141 cd00046 DEXDc DEAD-like helica 97.1 0.0012 2.5E-08 68.6 7.1 21 233-253 3-23 (144)
142 PF01695 IstB_IS21: IstB-like 97.1 0.00096 2.1E-08 75.1 6.9 61 232-292 49-122 (178)
143 KOG1840 Kinesin light chain [C 97.1 0.02 4.4E-07 73.8 19.2 215 1123-1368 201-439 (508)
144 PRK08903 DnaA regulatory inact 97.1 0.002 4.4E-08 74.9 9.6 82 208-293 23-105 (227)
145 PRK12377 putative replication 97.0 0.0012 2.7E-08 77.9 7.7 80 210-290 80-175 (248)
146 PRK08691 DNA polymerase III su 97.0 0.0015 3.2E-08 85.9 9.1 95 228-322 36-168 (709)
147 PRK14965 DNA polymerase III su 97.0 0.00096 2.1E-08 87.8 7.5 109 212-323 23-169 (576)
148 PRK13342 recombination factor 97.0 0.0014 3E-08 83.2 8.7 83 230-314 36-128 (413)
149 COG5290 IkappaB kinase complex 97.0 0.033 7.1E-07 71.8 20.2 181 1119-1333 875-1077(1243)
150 PF04053 Coatomer_WDAD: Coatom 97.0 0.01 2.2E-07 75.7 16.3 148 1062-1215 291-441 (443)
151 TIGR02881 spore_V_K stage V sp 97.0 0.0014 3E-08 78.1 7.9 61 231-291 43-118 (261)
152 PRK13341 recombination factor 97.0 0.0013 2.8E-08 88.1 8.5 83 231-315 53-146 (725)
153 PRK10747 putative protoheme IX 97.0 0.059 1.3E-06 68.3 22.9 76 1290-1366 270-356 (398)
154 KOG1126 DNA-binding cell divis 97.0 0.0055 1.2E-07 78.5 13.0 228 1069-1331 357-613 (638)
155 COG3972 Superfamily I DNA and 97.0 0.0025 5.4E-08 78.8 9.4 53 956-1031 526-578 (660)
156 PF13173 AAA_14: AAA domain 97.0 0.0017 3.7E-08 68.9 7.2 84 230-313 2-98 (128)
157 PRK14959 DNA polymerase III su 96.9 0.0014 3E-08 85.7 7.6 26 230-255 38-63 (624)
158 KOG0985 Vesicle coat protein c 96.9 0.051 1.1E-06 71.7 21.0 212 1121-1333 1061-1303(1666)
159 KOG0276 Vesicle coat complex C 96.9 0.0091 2E-07 75.3 13.7 82 1125-1206 618-709 (794)
160 TIGR02397 dnaX_nterm DNA polym 96.9 0.0018 3.9E-08 80.2 7.9 43 210-255 19-61 (355)
161 PRK06647 DNA polymerase III su 96.9 0.0017 3.7E-08 85.0 8.1 96 227-322 35-168 (563)
162 COG2255 RuvB Holliday junction 96.9 0.0028 6.1E-08 74.4 8.8 81 230-311 52-137 (332)
163 KOG0991 Replication factor C, 96.9 0.0014 3E-08 74.4 6.1 80 210-293 32-128 (333)
164 PF13177 DNA_pol3_delta2: DNA 96.9 0.0041 8.8E-08 69.0 9.7 111 213-323 2-152 (162)
165 PRK06893 DNA replication initi 96.9 0.0039 8.5E-08 72.9 10.0 62 230-291 39-104 (229)
166 PHA02544 44 clamp loader, smal 96.9 0.0021 4.5E-08 78.4 8.0 100 208-312 24-139 (316)
167 PRK10049 pgaA outer membrane p 96.9 0.069 1.5E-06 73.3 23.3 177 1173-1366 247-455 (765)
168 PRK14970 DNA polymerase III su 96.9 0.0027 5.8E-08 79.3 9.0 107 211-320 23-155 (367)
169 KOG0985 Vesicle coat protein c 96.9 0.12 2.7E-06 68.4 23.4 287 1062-1366 1101-1443(1666)
170 PRK07764 DNA polymerase III su 96.9 0.0022 4.8E-08 86.9 8.7 96 227-322 34-169 (824)
171 PF00004 AAA: ATPase family as 96.8 0.0026 5.6E-08 66.6 7.2 59 234-294 2-74 (132)
172 PRK08116 hypothetical protein; 96.8 0.004 8.6E-08 74.6 9.1 80 210-289 90-189 (268)
173 KOG1805 DNA replication helica 96.8 0.0078 1.7E-07 79.7 12.2 98 923-1043 970-1070(1100)
174 KOG1585 Protein required for f 96.8 0.074 1.6E-06 61.5 18.4 17 1123-1139 33-49 (308)
175 COG1875 NYN ribonuclease and A 96.8 0.0026 5.6E-08 76.8 7.2 110 206-320 226-395 (436)
176 TIGR03420 DnaA_homol_Hda DnaA 96.8 0.0038 8.3E-08 72.2 8.6 80 209-292 21-104 (226)
177 TIGR02521 type_IV_pilW type IV 96.7 0.062 1.3E-06 60.3 18.1 121 1063-1213 29-159 (234)
178 COG0470 HolB ATPase involved i 96.7 0.0032 6.9E-08 76.6 8.1 94 230-323 24-159 (325)
179 PF00580 UvrD-helicase: UvrD/R 96.7 0.0019 4.1E-08 77.8 6.0 51 209-268 1-56 (315)
180 PRK09111 DNA polymerase III su 96.7 0.0028 6.1E-08 83.4 7.7 109 211-322 30-181 (598)
181 PRK08058 DNA polymerase III su 96.7 0.0038 8.3E-08 76.9 8.2 111 213-323 11-160 (329)
182 PRK09782 bacteriophage N4 rece 96.6 0.44 9.5E-06 66.8 28.4 32 1062-1093 373-404 (987)
183 TIGR01448 recD_rel helicase, p 96.6 0.0012 2.6E-08 88.9 3.8 53 953-1030 647-699 (720)
184 PRK14953 DNA polymerase III su 96.6 0.0051 1.1E-07 79.4 9.3 43 212-254 20-62 (486)
185 PRK00080 ruvB Holliday junctio 96.6 0.0042 9.2E-08 76.5 8.2 83 210-292 30-116 (328)
186 CHL00181 cbbX CbbX; Provisiona 96.6 0.0039 8.4E-08 75.4 7.6 59 232-290 61-134 (287)
187 PRK14088 dnaA chromosomal repl 96.6 0.0047 1E-07 79.0 8.7 60 231-290 131-206 (440)
188 PRK04296 thymidine kinase; Pro 96.6 0.0046 1E-07 70.3 7.7 83 231-313 3-115 (190)
189 PRK07940 DNA polymerase III su 96.6 0.0055 1.2E-07 77.1 8.8 94 230-323 36-167 (394)
190 PRK00440 rfc replication facto 96.6 0.0099 2.2E-07 72.3 10.7 98 211-312 23-140 (319)
191 PHA00729 NTP-binding motif con 96.6 0.0035 7.6E-08 72.7 6.3 58 232-289 19-93 (226)
192 KOG2108 3'-5' DNA helicase [Re 96.5 0.0011 2.3E-08 87.0 2.3 70 954-1031 675-745 (853)
193 PRK05707 DNA polymerase III su 96.5 0.0038 8.2E-08 76.8 6.9 110 211-323 6-156 (328)
194 PRK14955 DNA polymerase III su 96.5 0.0062 1.3E-07 77.0 8.8 27 229-255 37-63 (397)
195 PRK00411 cdc6 cell division co 96.5 0.0081 1.8E-07 75.6 9.6 46 211-256 36-81 (394)
196 PF00308 Bac_DnaA: Bacterial d 96.5 0.013 2.9E-07 68.1 10.6 103 209-313 15-139 (219)
197 PTZ00424 helicase 45; Provisio 96.5 0.0053 1.2E-07 77.3 7.9 35 207-248 49-83 (401)
198 KOG1155 Anaphase-promoting com 96.4 0.027 5.9E-07 69.7 13.1 140 1062-1213 361-531 (559)
199 PRK14712 conjugal transfer nic 96.4 0.009 2E-07 84.9 10.2 125 207-349 280-428 (1623)
200 TIGR03015 pepcterm_ATPase puta 96.4 0.011 2.3E-07 70.4 9.5 45 209-255 24-68 (269)
201 COG1061 SSL2 DNA or RNA helica 96.4 0.0066 1.4E-07 77.8 8.2 86 205-293 33-161 (442)
202 TIGR02928 orc1/cdc6 family rep 96.4 0.0054 1.2E-07 76.3 7.3 47 209-255 19-65 (365)
203 PRK08727 hypothetical protein; 96.4 0.0055 1.2E-07 71.9 6.9 83 230-312 41-134 (233)
204 PF13087 AAA_12: AAA domain; P 96.4 0.0016 3.4E-08 73.8 2.0 77 932-1028 114-198 (200)
205 PRK06921 hypothetical protein; 96.3 0.006 1.3E-07 73.0 6.8 58 230-287 117-186 (266)
206 PTZ00112 origin recognition co 96.3 0.0097 2.1E-07 78.9 9.1 45 210-254 760-805 (1164)
207 KOG0547 Translocase of outer m 96.3 0.34 7.4E-06 60.8 21.5 73 1067-1140 117-202 (606)
208 PRK11331 5-methylcytosine-spec 96.3 0.017 3.6E-07 73.2 10.8 91 150-255 128-219 (459)
209 PRK08769 DNA polymerase III su 96.3 0.012 2.6E-07 72.0 9.4 115 209-323 5-163 (319)
210 PRK14954 DNA polymerase III su 96.3 0.0098 2.1E-07 78.6 9.1 43 213-255 21-63 (620)
211 PRK09112 DNA polymerase III su 96.3 0.0098 2.1E-07 73.9 8.7 44 213-256 28-71 (351)
212 PRK08939 primosomal protein Dn 96.3 0.0098 2.1E-07 72.6 8.4 60 232-291 158-230 (306)
213 PRK06835 DNA replication prote 96.3 0.0056 1.2E-07 75.3 6.3 61 231-291 184-259 (329)
214 KOG0987 DNA helicase PIF1/RRM3 96.3 0.008 1.7E-07 78.7 8.1 114 207-322 116-270 (540)
215 PHA02558 uvsW UvsW helicase; P 96.3 0.0062 1.3E-07 79.3 6.8 80 207-293 113-237 (501)
216 PRK06305 DNA polymerase III su 96.2 0.01 2.2E-07 76.1 8.6 29 228-256 37-65 (451)
217 PRK12422 chromosomal replicati 96.2 0.0072 1.6E-07 77.3 7.2 83 231-313 142-244 (445)
218 PRK07399 DNA polymerase III su 96.2 0.014 3.1E-07 71.4 9.4 111 213-323 9-173 (314)
219 PF07728 AAA_5: AAA domain (dy 96.2 0.0064 1.4E-07 65.1 5.6 68 233-300 2-89 (139)
220 KOG2002 TPR-containing nuclear 96.2 0.54 1.2E-05 63.2 23.5 148 1246-1400 272-440 (1018)
221 COG2956 Predicted N-acetylgluc 96.2 0.14 3.1E-06 61.3 16.6 181 1125-1336 73-276 (389)
222 TIGR02688 conserved hypothetic 96.2 0.0092 2E-07 74.6 7.2 104 233-340 212-344 (449)
223 TIGR02640 gas_vesic_GvpN gas v 96.2 0.012 2.6E-07 70.3 8.0 42 210-254 4-45 (262)
224 PRK09782 bacteriophage N4 rece 96.1 0.32 6.8E-06 68.2 22.6 27 1064-1091 476-502 (987)
225 TIGR00678 holB DNA polymerase 96.1 0.014 3.1E-07 65.9 8.1 95 228-322 12-145 (188)
226 PRK12723 flagellar biosynthesi 96.1 0.011 2.5E-07 74.0 7.9 63 230-292 174-268 (388)
227 KOG2114 Vacuolar assembly/sort 96.1 0.16 3.4E-06 67.0 18.0 156 1141-1317 341-511 (933)
228 PRK14974 cell division protein 96.1 0.012 2.7E-07 72.4 8.0 36 230-265 140-176 (336)
229 COG2812 DnaX DNA polymerase II 96.1 0.006 1.3E-07 78.3 5.4 103 227-330 35-175 (515)
230 PRK13531 regulatory ATPase Rav 96.1 0.0061 1.3E-07 77.5 5.4 78 213-293 25-122 (498)
231 COG0507 RecD ATP-dependent exo 96.1 0.0032 7E-08 85.1 3.2 45 207-258 200-244 (696)
232 PRK05564 DNA polymerase III su 96.1 0.013 2.8E-07 71.7 8.2 110 211-323 10-143 (313)
233 TIGR00362 DnaA chromosomal rep 96.1 0.0097 2.1E-07 75.4 7.0 61 231-291 137-212 (405)
234 COG1474 CDC6 Cdc6-related prot 96.1 0.013 2.7E-07 73.3 7.8 50 208-257 20-69 (366)
235 COG2804 PulE Type II secretory 96.0 0.021 4.6E-07 72.4 9.7 97 207-310 240-357 (500)
236 PRK14971 DNA polymerase III su 96.0 0.015 3.2E-07 77.2 8.8 110 213-322 22-170 (614)
237 TIGR02880 cbbX_cfxQ probable R 96.0 0.0098 2.1E-07 71.9 6.6 59 232-290 60-133 (284)
238 PRK10747 putative protoheme IX 96.0 0.31 6.7E-06 61.8 20.3 21 1072-1092 125-145 (398)
239 COG1702 PhoH Phosphate starvat 96.0 0.016 3.5E-07 70.1 8.2 38 207-251 127-164 (348)
240 TIGR00643 recG ATP-dependent D 96.0 0.016 3.6E-07 77.4 9.3 44 205-249 232-275 (630)
241 cd00268 DEADc DEAD-box helicas 96.0 0.017 3.7E-07 65.6 8.2 34 207-247 20-53 (203)
242 KOG0495 HAT repeat protein [RN 96.0 1 2.2E-05 58.4 23.6 304 1064-1384 515-863 (913)
243 PRK14722 flhF flagellar biosyn 96.0 0.012 2.6E-07 73.3 7.2 63 229-291 136-228 (374)
244 PRK10917 ATP-dependent DNA hel 96.0 0.016 3.6E-07 78.0 9.1 46 205-251 258-303 (681)
245 PRK14087 dnaA chromosomal repl 96.0 0.02 4.3E-07 73.5 9.4 82 231-312 142-247 (450)
246 KOG2003 TPR repeat-containing 96.0 0.42 9E-06 58.8 19.4 151 1069-1222 423-591 (840)
247 KOG1126 DNA-binding cell divis 96.0 0.087 1.9E-06 68.1 14.6 147 1062-1220 418-588 (638)
248 PRK06620 hypothetical protein; 95.9 0.017 3.6E-07 67.1 7.7 75 231-312 45-121 (214)
249 KOG1804 RNA helicase [RNA proc 95.9 0.0034 7.3E-08 83.3 2.2 190 234-432 212-418 (775)
250 PRK14950 DNA polymerase III su 95.9 0.017 3.6E-07 76.7 8.4 27 229-255 37-63 (585)
251 cd01129 PulE-GspE PulE/GspE Th 95.9 0.026 5.7E-07 67.5 9.3 44 208-256 63-106 (264)
252 PRK11192 ATP-dependent RNA hel 95.9 0.014 3E-07 74.6 7.3 34 207-247 22-55 (434)
253 PRK05642 DNA replication initi 95.9 0.021 4.6E-07 67.1 8.2 61 231-291 46-110 (234)
254 cd01120 RecA-like_NTPases RecA 95.9 0.014 2.9E-07 63.0 6.1 31 233-263 2-33 (165)
255 PRK01172 ski2-like helicase; P 95.9 0.017 3.6E-07 78.1 8.2 36 207-249 21-56 (674)
256 PRK00149 dnaA chromosomal repl 95.9 0.021 4.6E-07 73.4 8.8 61 231-291 149-224 (450)
257 PF00448 SRP54: SRP54-type pro 95.8 0.019 4.1E-07 65.8 7.2 34 230-263 1-35 (196)
258 PRK06871 DNA polymerase III su 95.8 0.03 6.5E-07 68.8 9.3 96 228-323 22-157 (325)
259 KOG0276 Vesicle coat complex C 95.7 0.053 1.2E-06 68.7 11.1 98 1120-1217 665-762 (794)
260 PRK11776 ATP-dependent RNA hel 95.7 0.018 3.9E-07 74.2 7.5 34 207-247 25-58 (460)
261 TIGR02521 type_IV_pilW type IV 95.7 0.45 9.7E-06 53.4 17.9 154 1122-1307 32-193 (234)
262 PHA02244 ATPase-like protein 95.7 0.022 4.8E-07 70.4 7.6 61 231-293 120-195 (383)
263 KOG2066 Vacuolar assembly/sort 95.7 0.84 1.8E-05 60.2 21.6 66 1261-1326 623-691 (846)
264 PRK11634 ATP-dependent RNA hel 95.7 0.023 5.1E-07 75.7 8.4 34 207-247 27-60 (629)
265 COG4096 HsdR Type I site-speci 95.6 0.011 2.3E-07 77.9 4.9 43 207-251 164-206 (875)
266 PRK07471 DNA polymerase III su 95.6 0.045 9.8E-07 68.5 10.2 43 213-255 24-66 (365)
267 PRK05580 primosome assembly pr 95.6 0.028 6E-07 75.8 8.9 42 206-251 142-183 (679)
268 COG1223 Predicted ATPase (AAA+ 95.6 0.01 2.2E-07 68.8 4.0 58 231-288 152-220 (368)
269 PRK03992 proteasome-activating 95.6 0.021 4.6E-07 72.0 7.3 25 230-254 165-189 (389)
270 PRK10865 protein disaggregatio 95.6 0.025 5.4E-07 78.0 8.5 61 231-291 200-284 (857)
271 COG3854 SpoIIIAA ncharacterize 95.6 0.015 3.3E-07 66.5 5.2 84 233-317 140-256 (308)
272 PRK07993 DNA polymerase III su 95.6 0.019 4.2E-07 70.8 6.7 97 227-323 21-158 (334)
273 TIGR00540 hemY_coli hemY prote 95.6 0.92 2E-05 57.8 21.9 120 1069-1190 88-214 (409)
274 KOG0744 AAA+-type ATPase [Post 95.6 0.0083 1.8E-07 71.3 3.2 25 230-254 177-201 (423)
275 COG5290 IkappaB kinase complex 95.5 0.57 1.2E-05 61.2 19.0 90 1121-1213 935-1032(1243)
276 PF00910 RNA_helicase: RNA hel 95.5 0.024 5.1E-07 58.5 6.1 58 234-293 2-64 (107)
277 PRK11448 hsdR type I restricti 95.5 0.025 5.5E-07 79.4 8.2 43 207-251 412-454 (1123)
278 COG1222 RPT1 ATP-dependent 26S 95.5 0.019 4.2E-07 69.6 6.0 54 233-288 188-254 (406)
279 PRK05703 flhF flagellar biosyn 95.5 0.064 1.4E-06 68.4 11.0 63 230-292 221-313 (424)
280 TIGR00580 mfd transcription-re 95.4 0.044 9.6E-07 75.7 9.8 44 206-250 449-492 (926)
281 TIGR02639 ClpA ATP-dependent C 95.3 0.033 7.1E-07 75.8 8.2 62 229-291 203-287 (731)
282 TIGR03499 FlhF flagellar biosy 95.3 0.033 7.2E-07 67.3 7.4 38 230-267 194-234 (282)
283 KOG0738 AAA+-type ATPase [Post 95.3 0.013 2.8E-07 71.3 3.8 56 233-288 248-314 (491)
284 TIGR01242 26Sp45 26S proteasom 95.3 0.022 4.7E-07 71.3 5.9 24 231-254 157-180 (364)
285 KOG0742 AAA+-type ATPase [Post 95.3 0.013 2.8E-07 71.3 3.5 83 206-288 356-453 (630)
286 TIGR02533 type_II_gspE general 95.3 0.043 9.4E-07 71.1 8.6 45 207-256 224-268 (486)
287 TIGR01650 PD_CobS cobaltochela 95.3 0.053 1.2E-06 66.3 8.8 43 206-254 46-88 (327)
288 PF13191 AAA_16: AAA ATPase do 95.2 0.022 4.7E-07 63.4 5.1 47 211-258 6-52 (185)
289 TIGR02768 TraA_Ti Ti-type conj 95.2 0.011 2.4E-07 80.3 3.2 51 952-1031 662-712 (744)
290 PRK13833 conjugal transfer pro 95.2 0.063 1.4E-06 65.9 9.2 42 207-254 127-168 (323)
291 PRK10590 ATP-dependent RNA hel 95.2 0.039 8.5E-07 71.1 7.8 34 207-247 22-55 (456)
292 PRK10689 transcription-repair 95.2 0.044 9.6E-07 77.3 8.8 44 204-248 596-639 (1147)
293 TIGR03345 VI_ClpV1 type VI sec 95.2 0.05 1.1E-06 75.0 9.1 82 212-293 570-683 (852)
294 PRK10436 hypothetical protein; 95.1 0.063 1.4E-06 69.0 9.3 46 207-257 200-245 (462)
295 PRK13709 conjugal transfer nic 95.1 0.055 1.2E-06 78.3 9.6 123 208-348 413-559 (1747)
296 PRK04837 ATP-dependent RNA hel 95.1 0.041 8.8E-07 70.2 7.6 34 207-247 29-62 (423)
297 PF07726 AAA_3: ATPase family 95.1 0.016 3.5E-07 61.6 3.2 84 233-318 2-102 (131)
298 TIGR01967 DEAH_box_HrpA ATP-de 95.1 0.043 9.4E-07 77.2 8.2 34 212-251 70-103 (1283)
299 KOG1802 RNA helicase nonsense 95.1 0.053 1.2E-06 69.4 8.1 79 933-1031 729-817 (935)
300 PRK14086 dnaA chromosomal repl 95.1 0.032 7E-07 73.1 6.6 83 231-313 315-419 (617)
301 TIGR01241 FtsH_fam ATP-depende 95.0 0.027 5.8E-07 73.4 5.7 58 232-291 90-160 (495)
302 TIGR03345 VI_ClpV1 type VI sec 95.0 0.053 1.2E-06 74.7 8.8 78 213-291 192-293 (852)
303 PRK06090 DNA polymerase III su 95.0 0.046 9.9E-07 67.1 7.2 97 227-323 22-158 (319)
304 PRK02362 ski2-like helicase; P 95.0 0.043 9.3E-07 74.9 7.7 37 207-249 22-58 (737)
305 PRK00771 signal recognition pa 95.0 0.048 1E-06 69.5 7.6 35 229-263 94-129 (437)
306 TIGR00603 rad25 DNA repair hel 95.0 0.079 1.7E-06 71.0 9.8 42 206-251 253-294 (732)
307 TIGR03346 chaperone_ClpB ATP-d 95.0 0.053 1.2E-06 75.0 8.6 60 232-291 196-279 (852)
308 KOG0743 AAA+-type ATPase [Post 94.9 0.029 6.3E-07 70.0 5.3 26 232-257 237-262 (457)
309 COG3973 Superfamily I DNA and 94.8 0.019 4.1E-07 73.1 3.4 60 684-754 189-250 (747)
310 TIGR02782 TrbB_P P-type conjug 94.8 0.1 2.3E-06 63.6 9.5 43 208-256 116-158 (299)
311 PTZ00454 26S protease regulato 94.8 0.04 8.6E-07 69.7 6.0 25 230-254 179-203 (398)
312 KOG2002 TPR-containing nuclear 94.8 0.7 1.5E-05 62.2 17.2 99 1116-1214 428-555 (1018)
313 COG2805 PilT Tfp pilus assembl 94.8 0.026 5.7E-07 67.0 4.1 29 229-257 124-152 (353)
314 PLN00020 ribulose bisphosphate 94.7 0.045 9.8E-07 67.4 6.2 26 229-254 147-172 (413)
315 KOG2003 TPR repeat-containing 94.7 0.59 1.3E-05 57.6 15.3 118 1064-1211 489-614 (840)
316 smart00299 CLH Clathrin heavy 94.7 0.91 2E-05 48.7 15.6 121 1191-1333 9-133 (140)
317 TIGR02538 type_IV_pilB type IV 94.7 0.087 1.9E-06 69.6 9.3 46 206-256 297-342 (564)
318 CHL00176 ftsH cell division pr 94.7 0.06 1.3E-06 71.8 7.6 57 232-290 218-287 (638)
319 PRK14720 transcript cleavage f 94.7 1.1 2.4E-05 61.6 19.4 68 1141-1215 123-195 (906)
320 PTZ00361 26 proteosome regulat 94.6 0.047 1E-06 69.7 6.3 25 230-254 217-241 (438)
321 PRK13826 Dtr system oriT relax 94.6 0.023 4.9E-07 78.9 3.7 51 952-1031 691-741 (1102)
322 COG0552 FtsY Signal recognitio 94.6 0.071 1.5E-06 64.7 7.4 65 229-293 138-236 (340)
323 PF13086 AAA_11: AAA domain; P 94.6 0.021 4.6E-07 65.5 3.0 37 718-754 1-41 (236)
324 PRK15359 type III secretion sy 94.6 0.17 3.7E-06 55.0 9.8 98 1062-1189 21-118 (144)
325 PRK13407 bchI magnesium chelat 94.6 0.065 1.4E-06 66.2 7.3 21 233-253 32-52 (334)
326 PRK08699 DNA polymerase III su 94.6 0.09 1.9E-06 64.9 8.5 28 228-255 19-46 (325)
327 TIGR00064 ftsY signal recognit 94.6 0.14 3E-06 61.7 9.9 35 230-264 72-107 (272)
328 PF04840 Vps16_C: Vps16, C-ter 94.6 2.5 5.4E-05 52.3 20.7 48 1287-1335 241-288 (319)
329 TIGR01618 phage_P_loop phage n 94.6 0.036 7.9E-07 64.5 4.8 22 230-251 12-33 (220)
330 cd01131 PilT Pilus retraction 94.6 0.071 1.5E-06 61.1 7.0 26 231-256 2-27 (198)
331 PRK13894 conjugal transfer ATP 94.6 0.11 2.4E-06 63.8 9.1 41 208-254 132-172 (319)
332 PF12569 NARP1: NMDA receptor- 94.6 1.7 3.7E-05 57.0 20.2 152 1198-1388 203-371 (517)
333 CHL00095 clpC Clp protease ATP 94.6 0.064 1.4E-06 74.0 7.8 46 212-257 513-566 (821)
334 PRK06964 DNA polymerase III su 94.5 0.12 2.5E-06 64.2 9.1 47 277-323 131-182 (342)
335 PRK11664 ATP-dependent RNA hel 94.5 0.066 1.4E-06 73.3 7.6 34 212-251 8-41 (812)
336 PF05707 Zot: Zonular occluden 94.5 0.042 9E-07 62.7 4.9 32 232-263 2-34 (193)
337 KOG0550 Molecular chaperone (D 94.5 0.23 5E-06 61.2 11.2 116 1044-1160 225-347 (486)
338 cd01983 Fer4_NifH The Fer4_Nif 94.4 0.11 2.5E-06 50.8 7.3 69 233-316 2-71 (99)
339 COG1618 Predicted nucleotide k 94.4 0.059 1.3E-06 59.1 5.4 24 233-256 8-31 (179)
340 PF00437 T2SE: Type II/IV secr 94.4 0.08 1.7E-06 63.4 7.2 46 211-262 114-160 (270)
341 PRK00254 ski2-like helicase; P 94.4 0.085 1.8E-06 71.9 8.2 36 207-248 22-57 (720)
342 TIGR03302 OM_YfiO outer membra 94.3 2 4.3E-05 50.0 18.4 67 1062-1147 30-96 (235)
343 COG0464 SpoVK ATPases of the A 94.3 0.083 1.8E-06 68.8 7.7 79 210-290 251-347 (494)
344 COG4889 Predicted helicase [Ge 94.3 0.12 2.6E-06 67.9 8.5 47 202-251 155-201 (1518)
345 TIGR03689 pup_AAA proteasome A 94.2 0.057 1.2E-06 69.9 5.9 25 231-255 217-241 (512)
346 PRK11189 lipoprotein NlpI; Pro 94.2 2.1 4.5E-05 52.3 18.9 119 1065-1213 64-189 (296)
347 KOG0652 26S proteasome regulat 94.2 0.048 1E-06 63.0 4.5 22 230-251 205-226 (424)
348 PRK05342 clpX ATP-dependent pr 94.2 0.052 1.1E-06 68.9 5.3 24 231-254 109-132 (412)
349 KOG0548 Molecular co-chaperone 94.2 3.4 7.5E-05 53.0 20.7 235 1069-1384 228-473 (539)
350 TIGR00348 hsdR type I site-spe 94.2 0.13 2.9E-06 69.3 9.4 43 209-251 239-284 (667)
351 KOG3785 Uncharacterized conser 94.2 2.3 4.9E-05 51.7 18.1 21 1251-1271 292-312 (557)
352 KOG0733 Nuclear AAA ATPase (VC 94.1 0.047 1E-06 69.7 4.6 60 231-290 224-294 (802)
353 TIGR02784 addA_alphas double-s 94.1 0.089 1.9E-06 75.2 8.0 85 277-368 390-496 (1141)
354 TIGR01970 DEAH_box_HrpB ATP-de 94.1 0.094 2E-06 71.8 7.8 34 212-251 5-38 (819)
355 COG2956 Predicted N-acetylgluc 94.1 8 0.00017 47.2 22.4 27 1063-1089 67-93 (389)
356 PRK10865 protein disaggregatio 94.1 0.08 1.7E-06 73.1 7.2 27 231-257 599-625 (857)
357 PRK11131 ATP-dependent RNA hel 94.1 0.087 1.9E-06 74.1 7.5 34 212-251 77-110 (1294)
358 TIGR02639 ClpA ATP-dependent C 94.1 0.088 1.9E-06 71.8 7.5 24 231-254 485-508 (731)
359 TIGR01054 rgy reverse gyrase. 94.1 0.088 1.9E-06 74.6 7.6 38 206-250 76-113 (1171)
360 PRK14574 hmsH outer membrane p 94.0 1.4 3.1E-05 60.7 18.7 129 1294-1432 303-451 (822)
361 PRK05917 DNA polymerase III su 94.0 0.14 3.1E-06 61.9 8.3 107 214-323 6-145 (290)
362 PF13207 AAA_17: AAA domain; P 94.0 0.044 9.5E-07 57.0 3.4 23 232-254 1-23 (121)
363 TIGR00614 recQ_fam ATP-depende 94.0 0.14 3E-06 66.5 8.6 33 207-246 10-42 (470)
364 TIGR00609 recB exodeoxyribonuc 93.9 0.13 2.8E-06 73.0 8.7 86 276-368 294-382 (1087)
365 PF13604 AAA_30: AAA domain; P 93.9 0.038 8.3E-07 63.2 2.9 30 718-747 1-35 (196)
366 CHL00195 ycf46 Ycf46; Provisio 93.9 0.079 1.7E-06 68.6 6.1 25 230-254 259-283 (489)
367 KOG0734 AAA+-type ATPase conta 93.8 0.063 1.4E-06 67.5 4.9 54 233-290 340-408 (752)
368 PRK11889 flhF flagellar biosyn 93.8 0.14 3E-06 64.0 7.8 36 230-265 241-277 (436)
369 KOG0727 26S proteasome regulat 93.8 0.061 1.3E-06 62.0 4.3 62 229-290 188-260 (408)
370 cd01130 VirB11-like_ATPase Typ 93.8 0.11 2.3E-06 58.9 6.4 43 207-255 8-50 (186)
371 KOG0547 Translocase of outer m 93.8 0.6 1.3E-05 58.7 12.9 32 1063-1094 392-423 (606)
372 PF05127 Helicase_RecD: Helica 93.8 0.036 7.9E-07 62.3 2.5 30 234-263 1-32 (177)
373 KOG2114 Vacuolar assembly/sort 93.8 2.3 4.9E-05 56.8 18.6 87 1068-1176 337-423 (933)
374 PRK06851 hypothetical protein; 93.8 0.078 1.7E-06 66.0 5.5 33 230-262 30-63 (367)
375 KOG1173 Anaphase-promoting com 93.7 1 2.3E-05 57.6 15.0 148 1062-1214 309-480 (611)
376 PRK12370 invasion protein regu 93.7 7.6 0.00016 51.7 24.2 107 1143-1270 347-467 (553)
377 KOG0739 AAA+-type ATPase [Post 93.7 0.081 1.8E-06 62.5 5.0 19 233-251 169-187 (439)
378 smart00487 DEXDc DEAD-like hel 93.6 0.21 4.7E-06 55.0 8.3 69 715-816 5-77 (201)
379 TIGR01420 pilT_fam pilus retra 93.6 0.12 2.7E-06 64.2 7.0 27 230-256 122-148 (343)
380 KOG2280 Vacuolar assembly/sort 93.6 2.4 5.1E-05 56.0 18.2 67 1269-1335 727-796 (829)
381 PRK06851 hypothetical protein; 93.6 0.11 2.4E-06 64.7 6.4 52 230-288 214-266 (367)
382 COG1419 FlhF Flagellar GTP-bin 93.6 0.21 4.5E-06 62.4 8.6 38 230-267 203-243 (407)
383 PRK04537 ATP-dependent RNA hel 93.6 0.12 2.5E-06 68.7 7.0 34 207-247 30-63 (572)
384 TIGR02903 spore_lon_C ATP-depe 93.6 0.13 2.9E-06 68.6 7.5 25 230-254 175-199 (615)
385 PRK13764 ATPase; Provisional 93.5 0.12 2.7E-06 68.0 7.0 31 231-261 258-288 (602)
386 PHA02624 large T antigen; Prov 93.5 0.14 3.1E-06 66.7 7.4 76 211-291 415-491 (647)
387 PRK11034 clpA ATP-dependent Cl 93.5 0.13 2.8E-06 69.8 7.4 24 231-254 489-512 (758)
388 KOG0731 AAA+-type ATPase conta 93.5 0.072 1.6E-06 70.8 4.7 52 233-288 347-413 (774)
389 PRK10416 signal recognition pa 93.4 0.19 4E-06 61.9 8.0 35 229-263 113-148 (318)
390 PRK10867 signal recognition pa 93.4 0.15 3.2E-06 65.1 7.2 34 230-263 100-135 (433)
391 TIGR01425 SRP54_euk signal rec 93.4 0.19 4E-06 64.0 8.0 36 230-265 100-136 (429)
392 PF05673 DUF815: Protein of un 93.3 0.23 5E-06 58.5 8.1 52 211-263 33-86 (249)
393 COG0714 MoxR-like ATPases [Gen 93.3 0.24 5.1E-06 61.3 8.8 78 210-293 29-127 (329)
394 PF13245 AAA_19: Part of AAA d 93.3 0.075 1.6E-06 51.7 3.5 53 730-813 9-62 (76)
395 KOG0624 dsRNA-activated protei 93.3 3.4 7.5E-05 50.2 17.6 25 1069-1093 42-66 (504)
396 TIGR00708 cobA cob(I)alamin ad 93.3 0.23 4.9E-06 55.8 7.7 84 230-313 5-139 (173)
397 PF06309 Torsin: Torsin; Inte 93.3 0.12 2.6E-06 55.0 5.2 26 232-257 55-80 (127)
398 PRK09401 reverse gyrase; Revie 93.3 0.12 2.7E-06 73.1 7.0 37 206-249 78-114 (1176)
399 cd03115 SRP The signal recogni 93.3 0.16 3.4E-06 56.6 6.5 32 232-263 2-34 (173)
400 PF13479 AAA_24: AAA domain 93.3 0.076 1.6E-06 61.6 4.2 19 232-250 5-23 (213)
401 PLN00206 DEAD-box ATP-dependen 93.2 0.15 3.3E-06 66.9 7.2 33 207-246 142-174 (518)
402 CHL00095 clpC Clp protease ATP 93.2 0.14 2.9E-06 70.8 7.1 42 210-255 184-225 (821)
403 COG1643 HrpA HrpA-like helicas 93.2 0.15 3.2E-06 69.4 7.2 34 212-251 53-86 (845)
404 TIGR02902 spore_lonB ATP-depen 93.2 0.18 3.8E-06 66.4 7.8 24 230-253 86-109 (531)
405 PRK10876 recB exonuclease V su 93.2 0.23 4.9E-06 71.0 9.3 86 276-368 375-463 (1181)
406 KOG0990 Replication factor C, 93.2 0.053 1.1E-06 65.1 2.6 24 231-254 63-86 (360)
407 KOG0741 AAA+-type ATPase [Post 93.1 0.12 2.6E-06 65.1 5.6 67 219-286 246-332 (744)
408 cd01124 KaiC KaiC is a circadi 93.1 0.1 2.3E-06 58.4 4.8 33 233-265 2-35 (187)
409 PHA02774 E1; Provisional 93.1 0.2 4.4E-06 65.0 7.8 56 231-290 435-491 (613)
410 PRK12370 invasion protein regu 93.1 2.9 6.3E-05 55.5 18.9 124 1062-1215 335-467 (553)
411 COG1198 PriA Primosomal protei 93.1 0.19 4E-06 67.5 7.7 42 207-251 197-238 (730)
412 cd02019 NK Nucleoside/nucleoti 93.1 0.16 3.4E-06 48.3 5.2 22 233-254 2-23 (69)
413 TIGR00763 lon ATP-dependent pr 93.1 0.14 3.1E-06 70.2 6.8 25 230-254 347-371 (775)
414 TIGR01243 CDC48 AAA family ATP 93.0 0.17 3.7E-06 69.1 7.6 24 231-254 213-236 (733)
415 COG3063 PilF Tfp pilus assembl 93.0 2.8 6E-05 48.9 15.7 155 1067-1272 37-201 (250)
416 cd00561 CobA_CobO_BtuR ATP:cor 93.0 0.35 7.5E-06 53.7 8.5 32 231-262 3-35 (159)
417 TIGR03346 chaperone_ClpB ATP-d 93.0 0.17 3.7E-06 70.1 7.5 27 231-257 596-622 (852)
418 TIGR01243 CDC48 AAA family ATP 92.9 0.12 2.6E-06 70.6 5.8 56 233-290 490-558 (733)
419 PF13671 AAA_33: AAA domain; P 92.9 0.071 1.5E-06 57.0 2.9 23 232-254 1-23 (143)
420 PTZ00110 helicase; Provisional 92.9 0.18 4E-06 66.5 7.3 33 207-246 151-183 (545)
421 TIGR02773 addB_Gpos ATP-depend 92.9 0.082 1.8E-06 75.7 4.4 72 946-1025 575-661 (1158)
422 PF06745 KaiC: KaiC; InterPro 92.9 0.19 4.2E-06 58.4 6.7 39 229-267 18-58 (226)
423 PRK13900 type IV secretion sys 92.8 0.28 6.1E-06 60.7 8.2 42 213-260 149-190 (332)
424 KOG0651 26S proteasome regulat 92.8 0.11 2.3E-06 62.1 4.3 26 229-254 165-190 (388)
425 KOG0737 AAA+-type ATPase [Post 92.7 0.098 2.1E-06 64.0 4.0 60 232-291 129-199 (386)
426 PF12774 AAA_6: Hydrolytic ATP 92.6 0.17 3.7E-06 59.5 5.8 90 230-319 32-134 (231)
427 PRK12724 flagellar biosynthesi 92.6 0.25 5.5E-06 62.4 7.6 37 230-266 223-261 (432)
428 cd01121 Sms Sms (bacterial rad 92.6 0.19 4.2E-06 63.0 6.7 34 230-263 82-116 (372)
429 COG0542 clpA ATP-binding subun 92.6 0.31 6.6E-06 65.5 8.7 134 213-401 496-641 (786)
430 COG4098 comFA Superfamily II D 92.6 0.19 4.1E-06 60.6 6.1 43 206-251 95-137 (441)
431 PF00176 SNF2_N: SNF2 family N 92.6 0.21 4.5E-06 60.0 6.7 40 213-252 2-47 (299)
432 KOG1155 Anaphase-promoting com 92.6 6.5 0.00014 49.8 19.0 119 1064-1191 329-460 (559)
433 PRK12727 flagellar biosynthesi 92.5 0.2 4.4E-06 64.7 6.7 35 230-264 350-387 (559)
434 TIGR01389 recQ ATP-dependent D 92.5 0.35 7.5E-06 64.6 9.3 34 207-247 12-45 (591)
435 TIGR00959 ffh signal recogniti 92.5 0.26 5.6E-06 62.9 7.6 35 230-264 99-135 (428)
436 PTZ00293 thymidine kinase; Pro 92.5 0.19 4.2E-06 58.1 5.9 82 230-311 4-110 (211)
437 cd05804 StaR_like StaR_like; a 92.5 5.6 0.00012 49.0 19.2 29 1064-1092 42-70 (355)
438 PRK11057 ATP-dependent DNA hel 92.5 0.3 6.5E-06 65.4 8.5 34 207-247 24-57 (607)
439 PF05729 NACHT: NACHT domain 92.5 0.11 2.4E-06 56.5 3.7 26 232-257 2-27 (166)
440 KOG0736 Peroxisome assembly fa 92.4 0.11 2.5E-06 67.9 4.3 25 229-254 705-729 (953)
441 PRK09087 hypothetical protein; 92.4 0.18 4E-06 59.1 5.7 56 230-290 44-99 (226)
442 KOG2247 WD40 repeat-containing 92.4 0.032 7E-07 69.2 -0.6 174 1167-1363 176-368 (615)
443 PRK13889 conjugal transfer rel 92.3 0.049 1.1E-06 75.3 0.9 47 953-1028 656-702 (988)
444 PF12569 NARP1: NMDA receptor- 92.3 2.2 4.7E-05 56.0 15.8 148 1124-1293 197-362 (517)
445 PRK06995 flhF flagellar biosyn 92.3 0.25 5.3E-06 63.8 7.1 37 230-266 256-295 (484)
446 PRK13909 putative recombinatio 92.3 0.089 1.9E-06 73.4 3.4 86 276-368 326-422 (910)
447 TIGR02785 addA_Gpos recombinat 92.3 0.25 5.5E-06 71.0 7.9 69 718-818 1-71 (1232)
448 TIGR00540 hemY_coli hemY prote 92.2 12 0.00027 47.7 22.3 88 1122-1218 119-216 (409)
449 COG1703 ArgK Putative periplas 92.2 0.26 5.6E-06 59.1 6.5 29 228-256 49-77 (323)
450 PRK01297 ATP-dependent RNA hel 92.1 0.26 5.7E-06 63.9 7.1 33 207-246 108-140 (475)
451 PRK04841 transcriptional regul 92.0 34 0.00074 48.1 28.3 23 230-252 32-54 (903)
452 PHA00350 putative assembly pro 92.0 0.22 4.9E-06 62.6 6.1 32 232-263 3-35 (399)
453 PHA00547 hypothetical protein 92.0 0.29 6.3E-06 57.3 6.4 62 230-291 75-150 (337)
454 TIGR00382 clpX endopeptidase C 92.0 0.22 4.7E-06 63.2 6.1 24 231-254 117-140 (413)
455 PF03215 Rad17: Rad17 cell cyc 92.0 0.19 4.1E-06 65.6 5.7 45 210-254 24-69 (519)
456 smart00763 AAA_PrkA PrkA AAA d 92.0 0.21 4.6E-06 61.9 5.8 48 207-254 54-102 (361)
457 KOG2247 WD40 repeat-containing 92.0 0.0061 1.3E-07 75.3 -7.3 183 1120-1334 184-368 (615)
458 PRK10866 outer membrane biogen 91.9 8.9 0.00019 45.6 19.0 65 1062-1145 29-93 (243)
459 PF01078 Mg_chelatase: Magnesi 91.9 0.19 4.1E-06 57.8 4.8 36 210-251 8-43 (206)
460 TIGR02012 tigrfam_recA protein 91.9 0.33 7.2E-06 59.7 7.2 37 229-265 54-91 (321)
461 PF09976 TPR_21: Tetratricopep 91.9 1.4 3.1E-05 47.7 11.4 97 1065-1189 48-144 (145)
462 PRK14701 reverse gyrase; Provi 91.8 0.43 9.2E-06 69.7 9.2 33 208-247 79-111 (1638)
463 PLN03088 SGT1, suppressor of 91.7 0.66 1.4E-05 58.1 9.8 94 1066-1189 3-96 (356)
464 TIGR02525 plasmid_TraJ plasmid 91.6 0.33 7.1E-06 61.0 7.0 26 230-255 149-174 (372)
465 cd00983 recA RecA is a bacter 91.6 0.37 8E-06 59.3 7.2 49 216-265 42-91 (325)
466 PRK12726 flagellar biosynthesi 91.6 0.42 9E-06 59.8 7.6 37 229-265 205-242 (407)
467 PRK13767 ATP-dependent helicas 91.5 0.35 7.6E-06 67.3 7.7 34 207-247 31-64 (876)
468 KOG3347 Predicted nucleotide k 91.5 0.28 6E-06 53.3 5.1 19 233-251 10-28 (176)
469 PF00158 Sigma54_activat: Sigm 91.4 0.23 4.9E-06 55.7 4.8 87 230-318 22-133 (168)
470 KOG0740 AAA+-type ATPase [Post 91.4 0.19 4.2E-06 63.3 4.6 81 233-315 189-299 (428)
471 PRK10370 formate-dependent nit 91.4 1 2.2E-05 51.8 10.1 99 1062-1189 70-170 (198)
472 TIGR03878 thermo_KaiC_2 KaiC d 91.4 0.22 4.9E-06 59.5 5.0 37 230-266 36-73 (259)
473 TIGR02442 Cob-chelat-sub cobal 91.3 0.28 6E-06 65.9 6.3 23 232-254 27-49 (633)
474 PF00270 DEAD: DEAD/DEAH box h 91.3 0.63 1.4E-05 50.9 8.1 64 720-816 1-67 (169)
475 TIGR02795 tol_pal_ybgF tol-pal 91.3 0.61 1.3E-05 47.4 7.5 100 1065-1189 2-102 (119)
476 PRK11034 clpA ATP-dependent Cl 91.3 0.32 7E-06 66.2 6.9 24 230-254 208-231 (758)
477 PF13238 AAA_18: AAA domain; P 91.3 0.16 3.5E-06 52.9 3.2 21 234-254 2-22 (129)
478 KOG1969 DNA replication checkp 91.3 0.31 6.8E-06 63.8 6.3 62 228-291 324-400 (877)
479 TIGR02788 VirB11 P-type DNA tr 91.3 0.51 1.1E-05 57.9 8.0 41 213-259 133-173 (308)
480 KOG0553 TPR repeat-containing 91.2 0.85 1.8E-05 54.8 9.3 113 1065-1213 81-193 (304)
481 PF13414 TPR_11: TPR repeat; P 91.1 0.59 1.3E-05 43.6 6.5 62 1064-1147 2-64 (69)
482 KOG2047 mRNA splicing factor [ 91.0 7.9 0.00017 50.7 17.9 131 1059-1189 381-537 (835)
483 COG0593 DnaA ATPase involved i 91.0 0.47 1E-05 59.9 7.3 83 230-313 113-217 (408)
484 PRK11189 lipoprotein NlpI; Pro 91.0 12 0.00027 45.6 19.5 89 1121-1217 64-160 (296)
485 PF14532 Sigma54_activ_2: Sigm 91.0 0.24 5.1E-06 53.4 4.2 63 230-293 21-84 (138)
486 PF07724 AAA_2: AAA domain (Cd 90.9 0.32 6.9E-06 54.7 5.3 62 231-292 4-82 (171)
487 KOG2034 Vacuolar sorting prote 90.9 9 0.0002 51.9 18.9 247 1125-1402 362-639 (911)
488 KOG1156 N-terminal acetyltrans 90.9 69 0.0015 42.6 26.1 31 1063-1093 73-103 (700)
489 PF13207 AAA_17: AAA domain; P 90.9 0.13 2.9E-06 53.4 2.1 17 733-749 2-18 (121)
490 PRK09354 recA recombinase A; P 90.8 0.52 1.1E-05 58.5 7.4 37 229-265 59-96 (349)
491 PRK04328 hypothetical protein; 90.8 0.42 9.2E-06 56.8 6.5 36 230-265 23-59 (249)
492 PF02399 Herpes_ori_bp: Origin 90.7 0.23 5.1E-06 66.4 4.6 25 230-254 49-73 (824)
493 PRK11823 DNA repair protein Ra 90.7 0.46 1E-05 61.2 7.2 37 229-265 79-116 (446)
494 smart00382 AAA ATPases associa 90.5 0.16 3.5E-06 52.4 2.3 23 731-753 3-25 (148)
495 PRK04841 transcriptional regul 90.5 15 0.00033 51.6 22.3 90 1117-1215 337-435 (903)
496 PF06068 TIP49: TIP49 C-termin 90.5 0.46 9.9E-06 58.8 6.4 55 212-266 31-86 (398)
497 PRK09361 radB DNA repair and r 90.5 0.34 7.4E-06 56.3 5.3 38 229-266 22-60 (225)
498 PRK14721 flhF flagellar biosyn 90.5 0.45 9.7E-06 60.6 6.6 26 229-254 190-215 (420)
499 KOG4340 Uncharacterized conser 90.4 49 0.0011 40.1 22.9 273 1064-1366 43-442 (459)
500 PF00931 NB-ARC: NB-ARC domain 90.3 0.43 9.4E-06 57.2 6.2 41 211-253 2-42 (287)
No 1
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=100.00 E-value=3.3e-55 Score=525.51 Aligned_cols=434 Identities=26% Similarity=0.358 Sum_probs=339.1
Q ss_pred cccccccChHHHHHHcHhHHHHHHHHHHHHhHhhhhcCCchhhccccccCCCCceeEeEEEeeeecccCCCC--------
Q 035724 3 QIPLSFQSVNRYFESFVFPLLEETRAQLSSSMEKISEAPFAQVVDLEDSKPYGAMLSDVKVDYWRNRFSNYS-------- 74 (1939)
Q Consensus 3 kIP~tF~S~~eY~~sF~~pLieE~rAel~Ss~e~is~ap~~ei~~~~~~~~~g~~ly~l~v~~~rtgl~g~~-------- 74 (1939)
++..+|+++.+|.++|-++.-.|. .+++ .+ ++....-+++| +|.-||..+.
T Consensus 231 hv~~ry~da~~y~~vf~pliklea--------------~ydk--~~----Kes~~q~~~tv-RW~~gLnkk~~a~f~~~k 289 (935)
T KOG1802|consen 231 HVQLRYEDAYEYQNVFSPLIKLEA--------------DYDK--RL----KESQTQENGTV-RWDIGLNKKRLAYFTLPK 289 (935)
T ss_pred cccccccchHHHhhhcchhhhhhh--------------hhhh--hh----hhhcccccceE-EeeeccccceEEEEecCC
Confidence 456789999999999944444442 2222 11 11122234444 6766665431
Q ss_pred -cCCCCCCCCcEEEEecCCCCCchhhhhcccce-eEEEEEeeccCCCCCCCccceEEEEecccccccCCCccEEEEEecc
Q 035724 75 -KESYKVLPGDILVLADAKPETASDLRRVGRMW-TFVSVTKVTEDKNESDTTSTSFKVKASKENQIDGANKSLFAIFLTN 152 (1939)
Q Consensus 75 -~~~y~~~~GDIV~Ls~~kp~~~sDl~r~g~~~-~~gvV~kv~~d~~e~~~~~~~~~v~~sk~~~~~~~~~~l~vv~l~N 152 (1939)
....++..||.+.|+....... +| .+|.|.++++...++ ..++++++.+.. ......+.+-|++|
T Consensus 290 ~~~e~kl~~GdE~~L~y~~~~~~--------~w~~~g~v~~~pd~~~dE----~~lEl~~~~~~p-~e~~~~Ftvd~vwk 356 (935)
T KOG1802|consen 290 LDSELKLAIGDEIRLTYSGGLVL--------PWNGIGSVLKIPDNNGDE----VKLELEFSQDPP-IEVTHGFTVDFVWK 356 (935)
T ss_pred CcchhccccCCeeEEEecCCcCC--------cccccceEEecCCCCcce----eEEEeecCCCCC-cccccceEEEEEEc
Confidence 2345678999999998654331 23 469999998754333 567777777633 33445689999999
Q ss_pred cccHHHHHHHHHhccCh------hHHHHhhcCCCCcccccccCCCcCCCccccccCCCCCCCCCHHHHHHHHHHHhcccC
Q 035724 153 VTSNTRIWNSLHMSGNL------KIIKELLCTDSVVKEDCELCPVQSDGIWNDIFGPSLSSTLNDSQAQAVLSCLRRTHC 226 (1939)
Q Consensus 153 ~~t~~R~~~AL~~~~~~------~ii~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LN~sQ~~AV~~~L~~~~~ 226 (1939)
-++|.||..||..++.. -+...+|+.+.. + +.....+++.|..+..++||.||..||+.+|+
T Consensus 357 ~ts~drm~~alk~la~D~~~vs~y~y~klLgh~~~--~------~~~k~~LP~~~s~~~lpkLN~SQ~~AV~~VL~---- 424 (935)
T KOG1802|consen 357 STSFDRMQLALKLLAVDEKKVSGYLYHKLLGHPVE--D------SSLKKLLPRRFSVPNLPKLNASQSNAVKHVLQ---- 424 (935)
T ss_pred CccHHHHHHHHHHhhhccccchhhhhhHHhcCcch--h------hhhcccCchhhcCCCchhhchHHHHHHHHHHc----
Confidence 99999999999987631 244455654211 0 11112233445455568999999999999998
Q ss_pred CCCCcEEEEeCCCCCchhHHHHHHH-------------------------------------------------------
Q 035724 227 DHKATVELIWGPPGTGKTKTVSMLL------------------------------------------------------- 251 (1939)
Q Consensus 227 ~~~~~v~LI~GPPGTGKTtti~~li------------------------------------------------------- 251 (1939)
.+++|||||||||||.|.++|+
T Consensus 425 ---rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~tgLKVvRl~aksRE~~~S~vs~L~l 501 (935)
T KOG1802|consen 425 ---RPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKTGLKVVRLCAKSREDIESDVSFLSL 501 (935)
T ss_pred ---CCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhcCceEeeeehhhhhhccCCccHHHH
Confidence 7899999999999999999998
Q ss_pred -----------------------------------------HHHhcCCcEEEEcccchhhHHhhhccCCcEEEEeCCccc
Q 035724 252 -----------------------------------------DFCFTKASLIFCTASSSYKLHRVAMEQLKFLVIDEAAQL 290 (1939)
Q Consensus 252 -----------------------------------------~~~l~~a~vI~~T~sss~~l~~l~~~~fdvVIIDEASQ~ 290 (1939)
+.++.+++||+||+.+++... +....|..|+||||.|+
T Consensus 502 h~~~~~~~~pELq~l~klkde~gelS~sD~~k~~~lk~~~e~ell~~AdVIccTcv~Agd~r-l~~~kfr~VLiDEaTQa 580 (935)
T KOG1802|consen 502 HEQLRNMDKPELQKLLKLKDEGGELSSSDEKKYRKLKRAAEKELLNQADVICCTCVGAGDRR-LSKFKFRTVLIDEATQA 580 (935)
T ss_pred HHHHhccCcHHHHHHHhhhhhcccccchhhHHHHHHHHHHHHHHHhhcCEEEEecccccchh-hccccccEEEEeccccc
Confidence 345678999999999887543 44478999999999999
Q ss_pred chHHhhccccCCCcceEEEEeccccCCcceeccccccccccCCHHHHHHhcCCccccccccccCChhhhccCcccccCCC
Q 035724 291 KEVESAIPLKLPGIQHAILIGDECQLPAMVESSVSGEACLGRSLFERLSNLGQAKHLLSIQYRMHPSISSFPNSYFYDNK 370 (1939)
Q Consensus 291 ~E~e~lipL~~~~~~rlVLiGD~~QLpPvV~s~~~~~~gl~~SLFeRL~~~~~~~~~L~~QYRmhp~I~~f~S~~FY~gk 370 (1939)
+||++++|+.+ |.+++||||||+||.|++..+.++.+|+.+||||||+..|..+++|.+||||||.|++|||+.||+|.
T Consensus 581 tEpe~LiPlvl-G~kq~VlVGDh~QLgpvi~~kK~a~Agl~qsLferli~lg~~P~~L~vQYRmhP~lSefpsn~fY~G~ 659 (935)
T KOG1802|consen 581 TEPECLIPLVL-GAKQLVLVGDHKQLGPVIMCKKAATAGLSQSLFERLISLGIKPIRLQVQYRMHPALSEFPSNMFYEGE 659 (935)
T ss_pred CCcchhhhhhh-cceeEEEeccccccCceeeeHHHHHhHHHHHHHHHHHhccCCceEEEEeeeeChhhhhcchhhhccch
Confidence 99999999998 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccccccc--CCCCCCCCeEEEEcCCCccc--cCCCCcCCHHHHHHHHHHHHHHHHcCCCCCcceE------
Q 035724 371 IFDSPNVKEKNYEKRF--LPGRMYGPYSFINVLDGREE--SIAHSYRNMVEVFVVMKILLNLYKVHNVSNLCSS------ 440 (1939)
Q Consensus 371 L~~~~~v~~~~~~~~~--l~~p~~~p~~Fidv~~G~Ee--~~g~S~~N~~EA~~V~~lV~~L~~~~~~~~~~I~------ 440 (1939)
|.++.....+.....+ |+.| ..|+.|..+ .|.|+ .+|+|+.|..||..+.+|++.|++.+..+ ..||
T Consensus 660 LqnGVT~~~R~~~g~~~pwp~p-~~pl~fy~~-~g~eeisasGtSf~Nr~Ea~~~ekii~~l~~~gv~~-~qIGVITpYe 736 (935)
T KOG1802|consen 660 LQNGVTEIERSPLGVDFPWPQP-DKPLFFYVC-YGQEEISASGTSFLNRTEAANCEKIITKLLKSGVKP-SQIGVITPYE 736 (935)
T ss_pred hhcCcchhhhccCCCCCCCCCC-CCccceEEe-ccceeeeccccceecHHHHHHHHHHHHHHHHcCCCH-HHeeeecccc
Confidence 9999988777654443 4444 348888888 88887 88999999999999999999999998544 4444
Q ss_pred -------------------eee-----eeec-------------ccc------cccc------------eeEEEEEcchH
Q 035724 441 -------------------LMK-----KCIN-------------VKY------FFLS------------MHCLWILGNAR 465 (1939)
Q Consensus 441 -------------------L~k-----tVDg-------------VRS------GFLs------------K~~LiIVGN~~ 465 (1939)
|-+ +||+ ||| |||+ |+||+||||+.
T Consensus 737 gQr~~i~~ym~~~gsl~~~ly~~veVasVDaFQGrEKdfIIlSCVRsn~~qgIGFl~d~RRlNVaLTRaK~glvivGN~~ 816 (935)
T KOG1802|consen 737 GQRSYIVNYMQTNGSLHKDLYKEVEVASVDAFQGREKDFIILSCVRSNEHQGIGFLNDPRRLNVALTRAKYGLVIVGNPK 816 (935)
T ss_pred hhHHHHHHHHHhcCccccchhheeEEEeeccccCcccceEEEEEeecccccccccccCchhhhhhhhhcccceEEecCHH
Confidence 101 6776 898 9998 99999999999
Q ss_pred HhhhcchHHHHHHHHHHHcCceecCc
Q 035724 466 TLTRKKSVWEALVHDANARQCFFNAE 491 (1939)
Q Consensus 466 tL~~~~~~W~~li~~~k~rgc~~~~~ 491 (1939)
+|++ ++.|.++|.++++++|++.+.
T Consensus 817 ~L~k-~~LW~~li~h~~eke~l~eg~ 841 (935)
T KOG1802|consen 817 VLRK-HPLWGHLITHYKEKEVLVEGP 841 (935)
T ss_pred Hhhh-chHHHHHHHHhhcccceeecc
Confidence 9999 599999999999999999874
No 2
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=4.3e-53 Score=511.71 Aligned_cols=438 Identities=23% Similarity=0.283 Sum_probs=342.7
Q ss_pred HHHHHHcHhHHHHHHHHHHHHhHhhhhcCCchhhccccccCCCCceeEeEEEeeeecccCCC----------CcCCCCCC
Q 035724 12 NRYFESFVFPLLEETRAQLSSSMEKISEAPFAQVVDLEDSKPYGAMLSDVKVDYWRNRFSNY----------SKESYKVL 81 (1939)
Q Consensus 12 ~eY~~sF~~pLieE~rAel~Ss~e~is~ap~~ei~~~~~~~~~g~~ly~l~v~~~rtgl~g~----------~~~~y~~~ 81 (1939)
.++.+.+.++|-+|+.++++.+...+...|+.. .++.|.++.++.+...++|++|+ .++...+.
T Consensus 3 ~~f~sk~~~ll~~er~~ei~~t~~~~~~~~ie~------l~~~g~~i~nl~~v~~~tGl~g~~li~f~~~~~~lp~~~~~ 76 (649)
T KOG1803|consen 3 EEFVSKMSELLDHERKAEISVTEKSLDNVPIEA------LQRKGLAILNLWLVSVRTGLGGKSLIVFSKNREVLPSNSFG 76 (649)
T ss_pred hHHHHHHHHHHHhhhhcchhhhhHhhhcCCHHH------HHhccceeeeEEEEEEeecccceEEEEeccCccccCcCCCC
Confidence 678899999999999999999999888877444 45789999999999999999885 47889999
Q ss_pred CCcEEEEecCCCCCchhhhhcccceeEEEEEeeccCCCCCCCccceEEEEecccccccCCCccEEEEEecccccHHHHHH
Q 035724 82 PGDILVLADAKPETASDLRRVGRMWTFVSVTKVTEDKNESDTTSTSFKVKASKENQIDGANKSLFAIFLTNVTSNTRIWN 161 (1939)
Q Consensus 82 ~GDIV~Ls~~kp~~~sDl~r~g~~~~~gvV~kv~~d~~e~~~~~~~~~v~~sk~~~~~~~~~~l~vv~l~N~~t~~R~~~ 161 (1939)
+||+|.|...+.... ..+++.|+|+++.++ .+.+.+....+......++.+..+.|.+||+||..
T Consensus 77 ~gd~v~lr~~~~~~~------~~~~~~GvV~~~~~~---------~i~~a~ee~~d~~~~~~~l~l~kl~n~vty~R~~~ 141 (649)
T KOG1803|consen 77 PGDVVWLRTDKLNNK------SKPCTEGVVYRVAED---------SIDVAFEEEVDKPLTLSSLRLLKLENKVTYRRMKD 141 (649)
T ss_pred CCcEEEEEccccccc------CcccccceeEeeccc---------hhhHhHHhhhcccchhhHHHHHHhhhhhhheecHH
Confidence 999999983222211 234788999999875 23344333332212222567788999999999999
Q ss_pred HHHhccC-------hhHHHHhhcCCCCcccccccCCCcCCCccccccCCCCCCCCCHHHHHHHHHHHhcccCCCCCcEEE
Q 035724 162 SLHMSGN-------LKIIKELLCTDSVVKEDCELCPVQSDGIWNDIFGPSLSSTLNDSQAQAVLSCLRRTHCDHKATVEL 234 (1939)
Q Consensus 162 AL~~~~~-------~~ii~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LN~sQ~~AV~~~L~~~~~~~~~~v~L 234 (1939)
++..+.. ..++..+.+..... |... ...... ..++..||.||++||..+++. ..+.+
T Consensus 142 ~~i~l~~~~~~~~~~~vv~~l~~~~~~~-------~~~~--~~~~~~-~~~~~~ln~SQk~Av~~~~~~------k~l~~ 205 (649)
T KOG1803|consen 142 TMICLSKFSNPGPSSDVVETLFGDRKPI-------PSPN--IEIKKI-TFFNKNLNSSQKAAVSFAINN------KDLLI 205 (649)
T ss_pred HHhhHhhhcCccchhhhHHHHhccccCC-------CCch--hhhccc-ccCCccccHHHHHHHHHHhcc------CCceE
Confidence 9976542 23445544432221 1111 011111 246788999999999999973 37899
Q ss_pred EeCCCCCchhHHHHHHH---------------------------------------------------------------
Q 035724 235 IWGPPGTGKTKTVSMLL--------------------------------------------------------------- 251 (1939)
Q Consensus 235 I~GPPGTGKTtti~~li--------------------------------------------------------------- 251 (1939)
|+||||||||+|+++||
T Consensus 206 I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~~~~~~l~R~g~paRl~~~~~~~sld~~~~t~d~~~ 285 (649)
T KOG1803|consen 206 IHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLTHLKLNLVRVGHPARLLESVADHSLDLLSNTKDNSQ 285 (649)
T ss_pred eeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhcccccchhhcCchhhhhhhhhhhHHHHHHhcCchhh
Confidence 99999999999999998
Q ss_pred -----------------------------------------------HHHhcCCcEEEEcccchhhHHhhhccCCcEEEE
Q 035724 252 -----------------------------------------------DFCFTKASLIFCTASSSYKLHRVAMEQLKFLVI 284 (1939)
Q Consensus 252 -----------------------------------------------~~~l~~a~vI~~T~sss~~l~~l~~~~fdvVII 284 (1939)
..++.+++||++|..++.. ..+....||++||
T Consensus 286 ~~~~~sk~~d~~~~~~~~tk~~~~~~~~~~~i~~lrkdl~kre~~~v~eii~n~~VVfaTl~ga~~-~~~~~~~fD~vII 364 (649)
T KOG1803|consen 286 NAKDISKDIDILFQKNTKTKNDKLRKGIRKEIKLLRKDLRKRERKTVKEIISNSRVVFATLGGALD-RLLRKRTFDLVII 364 (649)
T ss_pred hhhhhHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccceEEEeccchhh-hhhcccCCCEEEE
Confidence 1234568999999877765 3344577999999
Q ss_pred eCCcccchHHhhccccCCCcceEEEEeccccCCcceeccccccccccCCHHHHHHhc--CCccccccccccCChhhhccC
Q 035724 285 DEAAQLKEVESAIPLKLPGIQHAILIGDECQLPAMVESSVSGEACLGRSLFERLSNL--GQAKHLLSIQYRMHPSISSFP 362 (1939)
Q Consensus 285 DEASQ~~E~e~lipL~~~~~~rlVLiGD~~QLpPvV~s~~~~~~gl~~SLFeRL~~~--~~~~~~L~~QYRmhp~I~~f~ 362 (1939)
|||+|+.||+||+|+.. .+++||+|||+||||++.|..+...|++.|+|||+... +....+|++|||||..||.|+
T Consensus 365 DEaaQamE~~cWipvlk--~kk~ILaGDp~QLpP~v~S~~a~~~gl~~Sl~erlae~~~~~~~~~Ln~QYRMn~~Im~ws 442 (649)
T KOG1803|consen 365 DEAAQAMEPQCWIPVLK--GKKFILAGDPKQLPPTVLSDKAKRGGLQVSLLERLAEKFGNLSKILLNEQYRMNEKIMNWS 442 (649)
T ss_pred ehhhhhccchhhhHHhc--CCceEEeCCcccCCcccccchhhhccchhhHHHHHHHHcccchhhhhhhhhcchHHHhhCc
Confidence 99999999999999974 57999999999999999999999999999999999876 356889999999999999999
Q ss_pred cccccCCCCCCCCcccccccccccCC---CCCCCCeEEEEcCCCccc-------cCCCCcCCHHHHHHHHHHHHHHHHcC
Q 035724 363 NSYFYDNKIFDSPNVKEKNYEKRFLP---GRMYGPYSFINVLDGREE-------SIAHSYRNMVEVFVVMKILLNLYKVH 432 (1939)
Q Consensus 363 S~~FY~gkL~~~~~v~~~~~~~~~l~---~p~~~p~~Fidv~~G~Ee-------~~g~S~~N~~EA~~V~~lV~~L~~~~ 432 (1939)
|..||+|+|+++.++..+.+.+.... .+.+.|++|+|+ .|.+. ..-.|++|.+||++|+.+++.|++.+
T Consensus 443 n~~fY~~qlka~~~v~~~lL~dl~~v~~t~~t~~PlvlvDT-~~~~~~e~~~e~~~~~S~~N~gEa~Iv~~Hv~~L~~~g 521 (649)
T KOG1803|consen 443 NEVFYNGQLKAASSVASHLLRDLPNVLATESTKSPLVLVDT-QGEKDEEKRGEEEELGSKYNEGEAKIVMEHVKRLLEAG 521 (649)
T ss_pred HhhhcCCeeeecchhhhhhhhcccCCCCccccCCcEEEEec-ccchhhhhccchhhccccCCHHHHHHHHHHHHHHHHcC
Confidence 99999999999999998876653222 234679999999 55322 22249999999999999999999998
Q ss_pred CCCCcceE-----------ee------------eeeec-------------ccc------cccc------------eeEE
Q 035724 433 NVSNLCSS-----------LM------------KKCIN-------------VKY------FFLS------------MHCL 458 (1939)
Q Consensus 433 ~~~~~~I~-----------L~------------ktVDg-------------VRS------GFLs------------K~~L 458 (1939)
.. +..|+ |. .|||| ||| |||+ |+++
T Consensus 522 V~-p~dIaVIsPY~aQv~llR~~~~~~~~~veV~TVD~fQGrEkdvVIfsmVRSN~k~evGFL~e~RRLNVAiTRaRRh~ 600 (649)
T KOG1803|consen 522 VQ-PSDIAVISPYNAQVSLLREEDEEDFRDVEVGTVDGFQGREKDVVIFSLVRSNDKGEVGFLGETRRLNVAITRARRHF 600 (649)
T ss_pred CC-hhHeEEeccchHHHHHHhhcccccCccceeecccccccceeeEEEEEEEeecCcccccccCCcceeeEEEEeccceE
Confidence 44 44444 11 17887 899 9999 9999
Q ss_pred EEEcchHHhhhcchHHHHHHHHHHHcCceecCc
Q 035724 459 WILGNARTLTRKKSVWEALVHDANARQCFFNAE 491 (1939)
Q Consensus 459 iIVGN~~tL~~~~~~W~~li~~~k~rgc~~~~~ 491 (1939)
+||||..|+...+...+++++++.+++.++..+
T Consensus 601 ~vIgds~tl~~~~~~l~k~~~f~~~~~~~~~p~ 633 (649)
T KOG1803|consen 601 VVIGDSRTLKEGNEFLKKLVEFLEENKLVFGPS 633 (649)
T ss_pred EEEcCcHHHHhhHHHHHHHHHHhhhcceecccc
Confidence 999999999955799999999999999998443
No 3
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=100.00 E-value=2.2e-48 Score=502.56 Aligned_cols=418 Identities=25% Similarity=0.269 Sum_probs=316.4
Q ss_pred HHHHHHHHHhHhhhhcCCchhhccccccCCCCceeEeEEEeeeecccCCC--------CcCCCCCCCCcEEEEecCCCCC
Q 035724 24 EETRAQLSSSMEKISEAPFAQVVDLEDSKPYGAMLSDVKVDYWRNRFSNY--------SKESYKVLPGDILVLADAKPET 95 (1939)
Q Consensus 24 eE~rAel~Ss~e~is~ap~~ei~~~~~~~~~g~~ly~l~v~~~rtgl~g~--------~~~~y~~~~GDIV~Ls~~kp~~ 95 (1939)
.|+.+|+..+.+.+.+.++.+.. +.|.++++|.+. +++|++|+ ...++.+.+||+|+|+...|..
T Consensus 1 ~e~~~e~~~~~~~~~~~s~~~~~------~~g~~~~~l~~~-~~~~~~g~~~~~f~~~~~~~~~~~~GD~v~i~~~~~~~ 73 (637)
T TIGR00376 1 LEREAEISAMMNEIRRLSLKQRE------RRGRAILNLQGK-IRGGLLGFLLVRFGRRKAIATEISVGDIVLVSRGNPLQ 73 (637)
T ss_pred CchHHHHHHHHHHHHhcCHHHHH------hcCceEeceEEE-EEeCCCCeEEEEEecCCCCCCcCCCCCEEEEecCCCCC
Confidence 37899999999999999888854 669999999998 99998775 2346788999999999765532
Q ss_pred chhhhhcccceeEEEEEeeccCCCCCCCccceEEEEecccccccCCCccEEEEEecccccHHHHHHHHHhccC--hhHHH
Q 035724 96 ASDLRRVGRMWTFVSVTKVTEDKNESDTTSTSFKVKASKENQIDGANKSLFAIFLTNVTSNTRIWNSLHMSGN--LKIIK 173 (1939)
Q Consensus 96 ~sDl~r~g~~~~~gvV~kv~~d~~e~~~~~~~~~v~~sk~~~~~~~~~~l~vv~l~N~~t~~R~~~AL~~~~~--~~ii~ 173 (1939)
....|+|+++..+ .++|.+..+.+. .....+.+.++.|.+||+||..||..+.. ..+++
T Consensus 74 ---------~~~~g~V~~v~~~---------~i~v~~~~~~~~-~~~~~~~i~~~~~~~t~~rm~~aL~~l~~~~~~l~~ 134 (637)
T TIGR00376 74 ---------SDLTGVVTRVGKR---------FITVALEESVPQ-WSLKRVRIDLYANDVTFKRMKEALRALTENHSRLLE 134 (637)
T ss_pred ---------CCcEEEEEEEcCc---------EEEEEECCCCCc-ccCceEEEEEecCccHHHHHHHHHHHHHhchhhHHH
Confidence 2256999999864 577877665332 12235899999999999999999998753 25666
Q ss_pred HhhcCCCCcccccccCCCcCCCccccccCCCCCCCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHH
Q 035724 174 ELLCTDSVVKEDCELCPVQSDGIWNDIFGPSLSSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDF 253 (1939)
Q Consensus 174 ~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~ 253 (1939)
.+++...+... .+.. . + ...++.||++|+.||..++.. .++.+|+||||||||+|+++++..
T Consensus 135 ~llg~~~p~~~--------~~~~--~-~-~~~~~~ln~~Q~~Av~~~l~~------~~~~lI~GpPGTGKT~t~~~ii~~ 196 (637)
T TIGR00376 135 FILGREAPSKA--------SEIH--D-F-QFFDPNLNESQKEAVSFALSS------KDLFLIHGPPGTGKTRTLVELIRQ 196 (637)
T ss_pred HHhCCCCCCcc--------cccc--c-c-cccCCCCCHHHHHHHHHHhcC------CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 77765432110 0000 0 1 124578999999999999873 378999999999999999998844
Q ss_pred Hhc-CCcEEEEcccchh---------------------------------------------------------------
Q 035724 254 CFT-KASLIFCTASSSY--------------------------------------------------------------- 269 (1939)
Q Consensus 254 ~l~-~a~vI~~T~sss~--------------------------------------------------------------- 269 (1939)
+.. +.+|++|+.+..+
T Consensus 197 ~~~~g~~VLv~a~sn~Avd~l~e~l~~~~~~vvRlg~~~r~~~~~~~~sl~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 276 (637)
T TIGR00376 197 LVKRGLRVLVTAPSNIAVDNLLERLALCDQKIVRLGHPARLLKSNKQHSLDYLIENHPKYQIVADIREKIDELIEERNKK 276 (637)
T ss_pred HHHcCCCEEEEcCcHHHHHHHHHHHHhCCCcEEEeCCchhcchhHHhccHHHHHhcChhHHHHHHHHHHHHHHHHHHHhh
Confidence 332 2344444211100
Q ss_pred ----------------------------------------------------------------------------hHHh
Q 035724 270 ----------------------------------------------------------------------------KLHR 273 (1939)
Q Consensus 270 ----------------------------------------------------------------------------~l~~ 273 (1939)
....
T Consensus 277 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~a~v~~st~~~~~ 356 (637)
T TIGR00376 277 LKPSPQKRRGLSDIKILRKALKKREARGIESLKIASMAEWIETNKSIDRLLKLLPEIEERIENEILAESDVVQSTNSSAG 356 (637)
T ss_pred ccchHhHhhccchHHHHHHHHhhhhhcccchhhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhCCEEEeccCcHh
Confidence 0001
Q ss_pred hhccCCcEEEEeCCcccchHHhhccccCCCcceEEEEeccccCCcceeccccccccccCCHHHHHHhc-CCccccccccc
Q 035724 274 VAMEQLKFLVIDEAAQLKEVESAIPLKLPGIQHAILIGDECQLPAMVESSVSGEACLGRSLFERLSNL-GQAKHLLSIQY 352 (1939)
Q Consensus 274 l~~~~fdvVIIDEASQ~~E~e~lipL~~~~~~rlVLiGD~~QLpPvV~s~~~~~~gl~~SLFeRL~~~-~~~~~~L~~QY 352 (1939)
+....||+||||||+|++||++++|+.. .+++||||||+||||++.+.. ..+++.|+|+||... +...++|++||
T Consensus 357 l~~~~Fd~vIIDEAsQ~~ep~~lipl~~--~~~~vLvGD~~QLpP~v~s~~--~~~l~~SlferL~~~~~~~~~~L~~QY 432 (637)
T TIGR00376 357 LKGWEFDVAVIDEASQAMEPSCLIPLLK--ARKLILAGDHKQLPPTILSHD--AEELELTLFERLIKEYPERSRTLNVQY 432 (637)
T ss_pred hccCCCCEEEEECccccchHHHHHHHhh--CCeEEEecChhhcCCcccccc--ccccchhHHHHHHHhCCCceeecchhc
Confidence 2234899999999999999999999975 479999999999999998754 457899999999986 44578999999
Q ss_pred cCChhhhccCcccccCCCCCCCCcccccccccccCCC--------CCCCCeEEEEcCCCccc-----cCCCCcCCHHHHH
Q 035724 353 RMHPSISSFPNSYFYDNKIFDSPNVKEKNYEKRFLPG--------RMYGPYSFINVLDGREE-----SIAHSYRNMVEVF 419 (1939)
Q Consensus 353 Rmhp~I~~f~S~~FY~gkL~~~~~v~~~~~~~~~l~~--------p~~~p~~Fidv~~G~Ee-----~~g~S~~N~~EA~ 419 (1939)
||||+|+.|||..||+|+|++++++..+.+...+... ....|++|+|+ .|.+. ..++|+.|..||.
T Consensus 433 RMh~~I~~f~s~~fY~g~L~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~fidt-~g~~~~e~~~~~~~S~~N~~EA~ 511 (637)
T TIGR00376 433 RMNQKIMEFPSREFYNGKLTAHESVANILLRDLPKVEATDSEDDLETEIPLLFIDT-SGCELFELKEADSTSKYNPGEAE 511 (637)
T ss_pred CCCHHHHhhhHHhhcCCccccCcchhhhhhhhcccccccccccccCCCCCEEEEEC-CCccccccccCCCCCcCCHHHHH
Confidence 9999999999999999999999887665432211000 11248999999 55432 5678999999999
Q ss_pred HHHHHHHHHHHcCCCCCcceE---------------ee--------eeeec-------------ccc------cccc---
Q 035724 420 VVMKILLNLYKVHNVSNLCSS---------------LM--------KKCIN-------------VKY------FFLS--- 454 (1939)
Q Consensus 420 ~V~~lV~~L~~~~~~~~~~I~---------------L~--------ktVDg-------------VRS------GFLs--- 454 (1939)
.|+++++.|++.+..+ ..|+ +. .|||+ ||| ||+.
T Consensus 512 ~V~~~v~~l~~~g~~~-~~IgVItPY~aQv~~L~~~l~~~~~~i~v~TVd~fQG~E~DvIi~S~vrsn~~~~~gFl~d~r 590 (637)
T TIGR00376 512 LVSEIIQALVKMGVPA-NDIGVITPYDAQVDLLRQLLEHRHIDIEVSSVDGFQGREKEVIIISFVRSNRKGEVGFLKDLR 590 (637)
T ss_pred HHHHHHHHHHhcCCCc-ceEEEEcccHHHHHHHHHHHHhhCCCeEEccccccCCccccEEEEEEEecCCCCCcccccCcc
Confidence 9999999999876543 4444 10 16665 776 8987
Q ss_pred ---------eeEEEEEcchHHhhhcchHHHHHHHHHHHcCceecCcc
Q 035724 455 ---------MHCLWILGNARTLTRKKSVWEALVHDANARQCFFNAED 492 (1939)
Q Consensus 455 ---------K~~LiIVGN~~tL~~~~~~W~~li~~~k~rgc~~~~~~ 492 (1939)
|++||||||..+|.+ ++.|++++++|+++||+..++.
T Consensus 591 RLNVAlTRAK~~LiIvGn~~~l~~-~~~~~~li~~~~~~~~~~~~~~ 636 (637)
T TIGR00376 591 RLNVALTRARRKLIVIGDSRTLSN-HKFYKRLIEWCKQHGEVREAFK 636 (637)
T ss_pred eeeeehhhhhCceEEEECHHHhcc-ChHHHHHHHHHHHCCCEEcCCC
Confidence 999999999999997 5899999999999999988754
No 4
>KOG1801 consensus tRNA-splicing endonuclease positive effector (SEN1) [RNA processing and modification]
Probab=100.00 E-value=7.6e-34 Score=375.32 Aligned_cols=486 Identities=30% Similarity=0.342 Sum_probs=341.5
Q ss_pred ccccccccChHHHHHHcHhHHHHHHHHHHHHhHhhhhcCCchhhcccc---ccCCCC---ceeEeEEEeeeecccCCCCc
Q 035724 2 EQIPLSFQSVNRYFESFVFPLLEETRAQLSSSMEKISEAPFAQVVDLE---DSKPYG---AMLSDVKVDYWRNRFSNYSK 75 (1939)
Q Consensus 2 ~kIP~tF~S~~eY~~sF~~pLieE~rAel~Ss~e~is~ap~~ei~~~~---~~~~~g---~~ly~l~v~~~rtgl~g~~~ 75 (1939)
+.+|++|.+..+|+..|.++|+||.++++.++...++..++-++...+ ..++.. ...+........+-......
T Consensus 24 ~~~~~~~~~~~~~~~~~~p~~~ee~~~~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (827)
T KOG1801|consen 24 ETEPETFQSMEEYIREFFPPLLEECRSSLVSSSRKLKAPFLLEKPEQEQIAITKNNPTSKDLRQLTNEKNIFTKEKSEKT 103 (827)
T ss_pred hccchhhhhHHHHHHHhhhhhhHHHHHHHhhhhhhhccchhhhhhhhhhhhcccCCCCchhhhcchhHHHHHhhhhcccc
Confidence 478999999999999999999999999999999999887765533222 111111 11111111111100000012
Q ss_pred CCCCCCCCcEEEEecCCCCCchhhhhcccceeEEEEEeeccCCCCCCCccceEEEEecccccccCCCccEEEEEeccccc
Q 035724 76 ESYKVLPGDILVLADAKPETASDLRRVGRMWTFVSVTKVTEDKNESDTTSTSFKVKASKENQIDGANKSLFAIFLTNVTS 155 (1939)
Q Consensus 76 ~~y~~~~GDIV~Ls~~kp~~~sDl~r~g~~~~~gvV~kv~~d~~e~~~~~~~~~v~~sk~~~~~~~~~~l~vv~l~N~~t 155 (1939)
.....+.+|++..++..|...++..-....+..+.+.+...+ .+ .......+.+.. ..+.+++.++++
T Consensus 104 ~~~~~k~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~------~~~~~~~~~l~~ 171 (827)
T KOG1801|consen 104 ASSVEKHLDNIRHSDAIGFAASDHIPGLLPYLASPDLEKGPS--VD----LSLAATKSLPSL------ICAGAFLRVLVE 171 (827)
T ss_pred ccccccccchhhhcccCCccccccChhhhhhhcccccccccc--cc----cccchhcccccc------chHHHHHHHHhh
Confidence 223357899999987777766655322222222222211111 00 000000001000 011366788999
Q ss_pred HHHHHHHHHhccCh-hHHHHhhcCCCCcccccccCCCcCCCc-cccccCCCCCCCCCHHHHHHHHHHHhcccCCCCCcEE
Q 035724 156 NTRIWNSLHMSGNL-KIIKELLCTDSVVKEDCELCPVQSDGI-WNDIFGPSLSSTLNDSQAQAVLSCLRRTHCDHKATVE 233 (1939)
Q Consensus 156 ~~R~~~AL~~~~~~-~ii~~lL~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~LN~sQ~~AV~~~L~~~~~~~~~~v~ 233 (1939)
..|.|.+++...+. .++..-+.........+..+....... ............|+.+|..++..++....|.+..++.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~ 251 (827)
T KOG1801|consen 172 NKNEYILIACHANNHGLHRPDLRFNEVNERTVHKVFENFSVIGSLFVGDVIRFTKLSRDQEPLIRGVLSQRNCEWEVSIS 251 (827)
T ss_pred cchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhcccchhhHHHHhhccCcccccccccee
Confidence 99999999876542 222222221111111111111111100 0000112234679999999999999998999999999
Q ss_pred EEeCCCCC--chhHHHHHHH------------------------------------------------------------
Q 035724 234 LIWGPPGT--GKTKTVSMLL------------------------------------------------------------ 251 (1939)
Q Consensus 234 LI~GPPGT--GKTtti~~li------------------------------------------------------------ 251 (1939)
+|+||||| |||.|+..+.
T Consensus 252 ~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~r~~~~~~~~s~e~~~~~~~~~v~~~~~~~~~~~~~ 331 (827)
T KOG1801|consen 252 LVVGRPGTASGKFKTVAQLLNVLLGLDCQMLVCSLSNSNILLLTSRLYKQTARFSSEKIVYGFGEIVLVENRTQLGIRLN 331 (827)
T ss_pred eeeCCCCccccceeccchHHHHHHhcccceeEeeccccchhhhHHHHHhccccCCchhhhhcccchhhhhhhHhhhhhhh
Confidence 99999999 9999876555
Q ss_pred --------------------------------------------------------------------------------
Q 035724 252 -------------------------------------------------------------------------------- 251 (1939)
Q Consensus 252 -------------------------------------------------------------------------------- 251 (1939)
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~s~~~~p~~~~~~~~~~~~~~~~~ 411 (827)
T KOG1801|consen 332 KLISLPNSFGTIPTGSLSELSPPTGGIGSRLFSGEELLENNVPQSEKIVLMCLRMGFSLIQLPVDNGRFLSREFAEENLR 411 (827)
T ss_pred hhcccccccccccccccchhhccccchhhhhHHHHHhhcCcHHHHHHHHHHHHhhchhhhccchhhccccchhhHHhhhh
Confidence
Q ss_pred ---------------------------------------------------H----------------------------
Q 035724 252 ---------------------------------------------------D---------------------------- 252 (1939)
Q Consensus 252 ---------------------------------------------------~---------------------------- 252 (1939)
+
T Consensus 412 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~ 491 (827)
T KOG1801|consen 412 KLKPLPSIACIDLITHLPTLGLYDTNQVVRIGGGSVLNSGAIETVLEGDKIRKDKNKAIIERFNGLPKNIPKALSIKDDI 491 (827)
T ss_pred hcccchhhhhhcchhcCccceEecCCeeEEecCCccceeceeeeeehhhhhhhHHhhhhhhccccccccchhhhccccch
Confidence 0
Q ss_pred --------------HHhc----CCcEEEEcccchhh-HHhhhccCCcEEEEeCCcccchHHhhccccCCCcceEEEEecc
Q 035724 253 --------------FCFT----KASLIFCTASSSYK-LHRVAMEQLKFLVIDEAAQLKEVESAIPLKLPGIQHAILIGDE 313 (1939)
Q Consensus 253 --------------~~l~----~a~vI~~T~sss~~-l~~l~~~~fdvVIIDEASQ~~E~e~lipL~~~~~~rlVLiGD~ 313 (1939)
.++. .+.+|+||++++.. .......+++.+|||||+|..|+..++||.+++.++.+++||+
T Consensus 492 ~~i~~~~~~~~~~~~~~~~~~~~a~~i~~t~~~~~~~~~~~~~~p~~~vviDeaaq~~e~~s~~PL~l~g~~~~~lvgd~ 571 (827)
T KOG1801|consen 492 FKIPSQLERPEVRILDLGQGREEAALIVPTTRGSRIVLTLYGGPPLDTVVIDEAAQKYEPSSLEPLQLAGYQHCILVGDL 571 (827)
T ss_pred hhhhhhccchhhhcchhhhccccceeEeecccccceEeecccCCCceEEEEehhhhhcCccchhhhhhcCCceEEEeccc
Confidence 0000 33455555554443 2222456899999999999999999999999899999999999
Q ss_pred ccCCcceeccccccccccCCHHHHHHhcCCccccccccccCChhhhccCcccccCCCCCCCCcccccccccccCCCCCCC
Q 035724 314 CQLPAMVESSVSGEACLGRSLFERLSNLGQAKHLLSIQYRMHPSISSFPNSYFYDNKIFDSPNVKEKNYEKRFLPGRMYG 393 (1939)
Q Consensus 314 ~QLpPvV~s~~~~~~gl~~SLFeRL~~~~~~~~~L~~QYRmhp~I~~f~S~~FY~gkL~~~~~v~~~~~~~~~l~~p~~~ 393 (1939)
.|||++|.+..+..+++.+|+|+|+...+++..+|++||||||+|+.|||..||+++|++++.+....+...++.+++++
T Consensus 572 ~qlP~~V~s~~~~~~k~~~slf~rl~l~~~~~~~L~vqyrmhp~Is~fP~~~fy~~~i~d~~~vs~~~~~~~~~~~~~~~ 651 (827)
T KOG1801|consen 572 AQLPATVHSSPAGCFKYMTSLFERLELAGHKTLLLTVQYRMHPEISRFPSKEFYGGRLKDVNNVSESNTVKLWHSGETFG 651 (827)
T ss_pred ccCChhhccchhccccchhhHHHHHHHccCccceecceeecCCccccCccccccccccccCcccchhhccccCcCCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888889999999
Q ss_pred CeEEEEcCCCccc-cCCCCcCCHHHHHHHHHHHHHHHHcCCCCCc---ceE-------------------ee--------
Q 035724 394 PYSFINVLDGREE-SIAHSYRNMVEVFVVMKILLNLYKVHNVSNL---CSS-------------------LM-------- 442 (1939)
Q Consensus 394 p~~Fidv~~G~Ee-~~g~S~~N~~EA~~V~~lV~~L~~~~~~~~~---~I~-------------------L~-------- 442 (1939)
||.|+++..|+|. ..+.|..|..|+.++..++..|.+....... .+| .+
T Consensus 652 ~y~f~~v~~g~e~~~~~~s~~n~~E~~~~~~~~~~l~~~~~~~~~~~~~vGvisPY~~q~~~l~~~~~~~~~~~~~~~~~ 731 (827)
T KOG1801|consen 652 PYPFFNVHYGKERAGGGKSPVNNEEVRFVGAIYSRLYKVSQPQVSVPGSVGVISPYKNQVKALRERFPEAYSLLLANNVD 731 (827)
T ss_pred ceEEEEecccccccCCCCCcccHHHHHHHHHHHHHHHhhccccCCCCcceeeECchHHHHHHHHHHHHHHhcchhcccce
Confidence 9999999889988 5668999999999999999999987644322 232 01
Q ss_pred ---eeeec-------------ccc------cccc------------eeEEEEEcchHHhhhcchHHHHHHHHHHHcCcee
Q 035724 443 ---KKCIN-------------VKY------FFLS------------MHCLWILGNARTLTRKKSVWEALVHDANARQCFF 488 (1939)
Q Consensus 443 ---ktVDg-------------VRS------GFLs------------K~~LiIVGN~~tL~~~~~~W~~li~~~k~rgc~~ 488 (1939)
.|||| ||+ ||+. |+|+||+||..+|...+..|..++.+++.+||++
T Consensus 732 i~v~tvD~fqg~e~diii~s~vrs~~~g~igf~~~~~RlnvALtra~~~l~v~Gne~~L~~~~~~w~~li~da~~r~~~~ 811 (827)
T KOG1801|consen 732 LSVSTVDSFQGGERDIIIISTVRSIDEGSIGFECNLRRLNVALTRARTCFWLVGNEITLAPSCSIWASLILDAKGRGCFM 811 (827)
T ss_pred eEEEecccccCCCCceeEEEEEEecccCccchhhhHHHHHHhhcccccceEEecCccccccccchhhhhcchhccccccc
Confidence 16776 665 8886 7799999999999998888999999999999999
Q ss_pred cCccchhHHHH
Q 035724 489 NAEDEEDLGKA 499 (1939)
Q Consensus 489 ~~~~~~~l~~~ 499 (1939)
+...+.++...
T Consensus 812 ~~~~~~~~~~~ 822 (827)
T KOG1801|consen 812 DRAADVNDFDQ 822 (827)
T ss_pred ccccccchhhh
Confidence 99877655543
No 5
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=99.98 E-value=1.5e-32 Score=344.62 Aligned_cols=270 Identities=27% Similarity=0.342 Sum_probs=214.0
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHH-----------------------------------
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLL----------------------------------- 251 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li----------------------------------- 251 (1939)
..||..|++|+..+|.+ ....||.|-||||||||++.+|
T Consensus 668 ~~LN~dQr~A~~k~L~a------edy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~~i~~l 741 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAA------EDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGFGIYIL 741 (1100)
T ss_pred hhcCHHHHHHHHHHHhc------cchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhccCccee
Confidence 58999999999999996 4788999999999999999998
Q ss_pred -----------------------------HHHhcCCcEEEEcccchhhHHhhhccCCcEEEEeCCcccchHHhhccccCC
Q 035724 252 -----------------------------DFCFTKASLIFCTASSSYKLHRVAMEQLKFLVIDEAAQLKEVESAIPLKLP 302 (1939)
Q Consensus 252 -----------------------------~~~l~~a~vI~~T~sss~~l~~l~~~~fdvVIIDEASQ~~E~e~lipL~~~ 302 (1939)
+..+....||.|||.+.... -+....||++|||||||+..|-++.|+..
T Consensus 742 RLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~p-lf~~R~FD~cIiDEASQI~lP~~LgPL~~- 819 (1100)
T KOG1805|consen 742 RLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHP-LFVNRQFDYCIIDEASQILLPLCLGPLSF- 819 (1100)
T ss_pred ecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCch-hhhccccCEEEEccccccccchhhhhhhh-
Confidence 12345678999999877632 23456799999999999999999999986
Q ss_pred CcceEEEEeccccCCcceeccccccccccCCHHHHHHhc-CCccccccccccCChhhhccCcccccCCCCCCCCcccccc
Q 035724 303 GIQHAILIGDECQLPAMVESSVSGEACLGRSLFERLSNL-GQAKHLLSIQYRMHPSISSFPNSYFYDNKIFDSPNVKEKN 381 (1939)
Q Consensus 303 ~~~rlVLiGD~~QLpPvV~s~~~~~~gl~~SLFeRL~~~-~~~~~~L~~QYRmhp~I~~f~S~~FY~gkL~~~~~v~~~~ 381 (1939)
..++||||||.||||.|.+..++..|++.|||+||... +..+..|+.||||+.+|+.++|..||+|+|+.+.....+.
T Consensus 820 -s~kFVLVGDh~QLpPLV~s~ear~~Gl~~SLFkrL~e~hpeaV~~Lt~QYRMn~~I~~LSN~L~Yg~~L~Cgs~eVs~~ 898 (1100)
T KOG1805|consen 820 -SNKFVLVGDHYQLPPLVRSSEARQEGLSESLFKRLSEKHPEAVSSLTLQYRMNREIMRLSNKLIYGNRLKCGSKEVSRA 898 (1100)
T ss_pred -cceEEEecccccCCccccchhhhhcCcchHHHHHHhhhCchHHHhHHHHHhhcchHHhhhhhheECCeeeecChhhhhh
Confidence 48999999999999999999999999999999999984 4667899999999999999999999999999886543320
Q ss_pred -----------c-----cc---ccCCCCCCCCeEEEEcCC--Cccc-cCCCCcCCHHHHHHHHHHHHHHHHcCCCCCcce
Q 035724 382 -----------Y-----EK---RFLPGRMYGPYSFINVLD--GREE-SIAHSYRNMVEVFVVMKILLNLYKVHNVSNLCS 439 (1939)
Q Consensus 382 -----------~-----~~---~~l~~p~~~p~~Fidv~~--G~Ee-~~g~S~~N~~EA~~V~~lV~~L~~~~~~~~~~I 439 (1939)
+ .. ..+..| -.+++|+++.. +-++ ....-..|..||..|+++++.+++.|..+ ..|
T Consensus 899 ~~~~~~~~~~~~~~~s~s~~wl~~v~~p-~~~v~f~~~D~~~~ie~~~e~~~i~N~~EA~li~~~~~~fv~sGv~~-~dI 976 (1100)
T KOG1805|consen 899 SELDRKGALSVYMDDSSSDHWLQAVLEP-TRDVCFVNTDTCSTIESQGEKGGITNHGEAKLISELVEDFVKSGVKP-SDI 976 (1100)
T ss_pred hccccchhhhhhcccccchHHHHHhhcC-CccceEEecCcccchhhhccccCcCchhHHHHHHHHHHHHHHcCCCH-HHe
Confidence 0 00 011233 24678877732 2232 45556679999999999999999998765 344
Q ss_pred E---------------ee------eeeec-------------ccc------c-ccc------------eeEEEEEcchHH
Q 035724 440 S---------------LM------KKCIN-------------VKY------F-FLS------------MHCLWILGNART 466 (1939)
Q Consensus 440 ~---------------L~------ktVDg-------------VRS------G-FLs------------K~~LiIVGN~~t 466 (1939)
| +. .|||. ||| | -|. |+.||+||...+
T Consensus 977 GIis~YraQv~Li~~~l~~~~lEinTVD~yQGRDKd~IivSfvrsn~~~~~~eLLkD~rRlNVAlTRAK~KLIlvGs~s~ 1056 (1100)
T KOG1805|consen 977 GIISPYRAQVELIRKILSSAVLEINTVDRYQGRDKDCIIVSFVRSNKKSKVGELLKDWRRLNVALTRAKKKLILVGSKST 1056 (1100)
T ss_pred eeeehHHHHHHHHHhhccccceeeeehhhhcCCCCCEEEEEEEecCCcccHHHHHHhhHHHHHHHHhhhceEEEEecccc
Confidence 4 11 16764 776 1 111 999999999999
Q ss_pred hhhcchHHHHHHHHHHHcCcee
Q 035724 467 LTRKKSVWEALVHDANARQCFF 488 (1939)
Q Consensus 467 L~~~~~~W~~li~~~k~rgc~~ 488 (1939)
|... +..++++++..++..++
T Consensus 1057 l~~~-~~~~~l~~~l~~~~~l~ 1077 (1100)
T KOG1805|consen 1057 LESY-PPFRQLLKLLENRIELL 1077 (1100)
T ss_pred cccC-chHHHHHhhhhhhhhHH
Confidence 9885 89999999987665543
No 6
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=99.97 E-value=3e-31 Score=324.18 Aligned_cols=229 Identities=28% Similarity=0.356 Sum_probs=190.4
Q ss_pred HhcCCcEEEEcccchhhHHh-hhccCCcEEEEeCCcccchHHhhccccCCCcceEEEEeccccCCccee-cccccccccc
Q 035724 254 CFTKASLIFCTASSSYKLHR-VAMEQLKFLVIDEAAQLKEVESAIPLKLPGIQHAILIGDECQLPAMVE-SSVSGEACLG 331 (1939)
Q Consensus 254 ~l~~a~vI~~T~sss~~l~~-l~~~~fdvVIIDEASQ~~E~e~lipL~~~~~~rlVLiGD~~QLpPvV~-s~~~~~~gl~ 331 (1939)
+++.+.||++|++++.++.. +....+.+|||+||+.+.|+..+..+. +...|+||||||+||.|... .++...+++.
T Consensus 695 llR~a~vigmTTTgaaryr~ilekv~pkivivEEAAEVlEahiIaal~-p~~EhviLIGDHKQLrP~~~vy~L~q~fnL~ 773 (1025)
T KOG1807|consen 695 LLREADVIGMTTTGAARYRFILEKVQPKIVIVEEAAEVLEAHIIAALT-PHTEHVILIGDHKQLRPFSGVYKLPQIFNLS 773 (1025)
T ss_pred HhhccceeeeechhHHHHHHHHHHhCCcEEEEhhHhHHhhcchhhhhc-ccceeEEEecchhhcCCCcchhhHhHhcchh
Confidence 46778999999999888765 356778999999999999998766654 46899999999999999753 3456668999
Q ss_pred CCHHHHHHhcCCccccccccccCChhhhccCcccccCCCCCCCCcccccccccccCCCCCCCCeEEEEcCCCccc-cCCC
Q 035724 332 RSLFERLSNLGQAKHLLSIQYRMHPSISSFPNSYFYDNKIFDSPNVKEKNYEKRFLPGRMYGPYSFINVLDGREE-SIAH 410 (1939)
Q Consensus 332 ~SLFeRL~~~~~~~~~L~~QYRmhp~I~~f~S~~FY~gkL~~~~~v~~~~~~~~~l~~p~~~p~~Fidv~~G~Ee-~~g~ 410 (1939)
.||||||+..|.|...|+.||||||.|+++....||++ |.++++|..- ++ +++ |.....|+.+ ...|+ .++.
T Consensus 774 iSlFERLVe~glpfsrLn~QhRM~p~IsrllvpsiYdd-l~d~esvk~y--ed--I~g-ms~nlfFv~h-nspee~~de~ 846 (1025)
T KOG1807|consen 774 ISLFERLVEAGLPFSRLNLQHRMRPCISRLLVPSIYDD-LLDSESVKEY--ED--IRG-MSKNLFFVQH-NSPEECMDEM 846 (1025)
T ss_pred HHHHHHHHHcCCChhhhhHHhhhchHHHHHhhHHHhhh-hhcchhhccc--cc--ccc-ccceeeEEec-CCcccCcchh
Confidence 99999999999999999999999999999999999986 7778777642 11 222 3457788888 66655 6679
Q ss_pred CcCCHHHHHHHHHHHHHHHHcCCCCCcceEe------------------ee-----eeec-------------ccc----
Q 035724 411 SYRNMVEVFVVMKILLNLYKVHNVSNLCSSL------------------MK-----KCIN-------------VKY---- 450 (1939)
Q Consensus 411 S~~N~~EA~~V~~lV~~L~~~~~~~~~~I~L------------------~k-----tVDg-------------VRS---- 450 (1939)
|+.|..||.++++++++|++++..+++.+.| +. |||+ |||
T Consensus 847 S~~NlhEa~mlv~l~kyli~q~y~psdIviLttY~gQk~ci~rllp~~~~stv~VatVDsfQGeEndIVLlSLVRsn~~g 926 (1025)
T KOG1807|consen 847 SIGNLHEAGMLVKLTKYLIQQQYKPSDIVILTTYNGQKECIKRLLPQNYRSTVQVATVDSFQGEENDIVLLSLVRSNISG 926 (1025)
T ss_pred hhhhHHHHHHHHHHHHHHHhcCCCccceEEEeechhHHHHHHHHhHHHhcCcceEEEeccccCccccEEEEEEEeccCCc
Confidence 9999999999999999999988777554431 11 7786 898
Q ss_pred --cccc------------eeEEEEEcchHHhhhcchHHHHHHHHHHHcCceecC
Q 035724 451 --FFLS------------MHCLWILGNARTLTRKKSVWEALVHDANARQCFFNA 490 (1939)
Q Consensus 451 --GFLs------------K~~LiIVGN~~tL~~~~~~W~~li~~~k~rgc~~~~ 490 (1939)
|||+ |+||+||||...|.++.+.|.++|+..++++.+-.+
T Consensus 927 riGFL~~anRvCVALSRAr~glyiiGN~q~la~~~pLWnkivntLrenn~Ig~~ 980 (1025)
T KOG1807|consen 927 RIGFLRQANRVCVALSRARWGLYIIGNVQILADTPPLWNKIVNTLRENNAIGEA 980 (1025)
T ss_pred eeeeeeccchhhhhhhhhhcceEEecceeecccCchhHHHHHHHHHhccccccc
Confidence 9999 999999999999999889999999999998876444
No 7
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.97 E-value=1.9e-30 Score=310.96 Aligned_cols=290 Identities=18% Similarity=0.158 Sum_probs=227.6
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchH--------HHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcC-
Q 035724 1065 PEEWKSRGIKLFHEHNYDMATICFEKAKDSYWE--------GRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIG- 1135 (1939)
Q Consensus 1065 peeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~--------~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G- 1135 (1939)
.++| |+++.++|+||.|+++|+.|++..++ +|.+|..+.+..+. .+.+.++|-+.|.+|...|
T Consensus 709 ee~w---g~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildniqd-----qk~~s~yy~~iadhyan~~d 780 (1636)
T KOG3616|consen 709 EEAW---GDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQD-----QKTASGYYGEIADHYANKGD 780 (1636)
T ss_pred HHHH---hHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhh-----hccccccchHHHHHhccchh
Confidence 4678 99999999999999999999996554 46666666554332 2223344445555555444
Q ss_pred ------------CHHHHHHHHHHhCCHHHHHHHHHHhcCh----HHHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHHHH
Q 035724 1136 ------------KADSAAKCFYNLGEYERAGRIYLERREE----PELEKAGECFFLAGCYKLAADVYAKGKFFSECLAVC 1199 (1939)
Q Consensus 1136 ------------~~~kAaecy~kag~~~~A~eLY~e~~~e----~~~~qaAe~fE~~G~y~eAAelY~kagd~dkAI~my 1199 (1939)
.+..|+.||.++|.|++|.++..+..+. +.|.-.|+-+++.|+|.+|+++|...|++++||.||
T Consensus 781 fe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmy 860 (1636)
T KOG3616|consen 781 FEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMY 860 (1636)
T ss_pred HHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHH
Confidence 4455555555555555555554443222 225666889999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHh-hhhcccccccccccchhhhhhhhhHhHHHHH-HHHHHHHHHHhcCCHHHHHHHHHHhccHHHHH
Q 035724 1200 SKGKLFEIGLQYMNH-WKQHADTDVEHAGTDVGLLVRSMEINKIEQE-FLEKCAIHYYGLQDKKSMMKFVKSFRSVDLMR 1277 (1939)
Q Consensus 1200 ~k~k~fd~airLv~q-~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~-~le~aa~hy~kagD~k~A~~~~~~~~s~eeA~ 1277 (1939)
.+++.+|+|+|++++ |++++.. +|.+++ ..++.+ -+.+|..||+++|||+++++||++.+.|++|+
T Consensus 861 dk~~~~ddmirlv~k~h~d~l~d------t~~~f~------~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~day 928 (1636)
T KOG3616|consen 861 DKHGLDDDMIRLVEKHHGDHLHD------THKHFA------KELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAY 928 (1636)
T ss_pred HhhCcchHHHHHHHHhChhhhhH------HHHHHH------HHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHH
Confidence 999999999999995 4555442 233333 333333 56778999999999999999999999999998
Q ss_pred HH-----------------------------HHhhcCHHHHHHHHHhcCCHHHHHHHHHHc-------------------
Q 035724 1278 KF-----------------------------LKSLSCFDDLLVLEEESGNFMDAANIARLR------------------- 1309 (1939)
Q Consensus 1278 ~~-----------------------------L~k~~~ldea~ell~e~G~feEAa~Lak~~------------------- 1309 (1939)
++ |.++|.+++++++.++.+.|+.||.+++-.
T Consensus 929 riaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~lede 1008 (1636)
T KOG3616|consen 929 RIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDE 1008 (1636)
T ss_pred HHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhc
Confidence 88 889999999999999999999998876532
Q ss_pred ---------------------------------------CCHHHHHHHHHHhCCHHHHHHHHHHHh---hhhccccCCCC
Q 035724 1310 ---------------------------------------GDIFLAVDLLQKAGCFKEACNVTLNHV---ISNSLWSPGSK 1347 (1939)
Q Consensus 1310 ---------------------------------------Gk~~eAi~my~kAG~~~eA~rva~~~~---~~~~l~~~~~~ 1347 (1939)
++|.+|++||++..+|.+|.|+|+-|+ +++||.+|||.
T Consensus 1009 gk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~~~~l~dv~tgqar~ 1088 (1636)
T KOG3616|consen 1009 GKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHCEDLLADVLTGQARG 1088 (1636)
T ss_pred cchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhChhhhHHHHhhhhhc
Confidence 599999999999999999999999995 99999999999
Q ss_pred CCCCcchhhHHHHHHHHHhHhhhhhHHH
Q 035724 1348 GWPLKQFTKKKELLEKAKSLAKNESNQF 1375 (1939)
Q Consensus 1348 ~~~~~~~~~ae~ll~~A~~~~~~~s~~~ 1375 (1939)
+.+.++|++||.+|+||++ -+-.-+.|
T Consensus 1089 aiee~d~~kae~fllrank-p~i~l~yf 1115 (1636)
T KOG3616|consen 1089 AIEEGDFLKAEGFLLRANK-PDIALNYF 1115 (1636)
T ss_pred cccccchhhhhhheeecCC-CchHHHHH
Confidence 9999999999999999998 34445666
No 8
>COG1112 Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair]
Probab=99.86 E-value=2.4e-21 Score=260.05 Aligned_cols=228 Identities=28% Similarity=0.350 Sum_probs=183.2
Q ss_pred CcEEEEcccchhhHHhhhccCCcEEEEeCCcccchHHhhccccCCCcceEEEEeccccCCcceeccccccccccCCHHHH
Q 035724 258 ASLIFCTASSSYKLHRVAMEQLKFLVIDEAAQLKEVESAIPLKLPGIQHAILIGDECQLPAMVESSVSGEACLGRSLFER 337 (1939)
Q Consensus 258 a~vI~~T~sss~~l~~l~~~~fdvVIIDEASQ~~E~e~lipL~~~~~~rlVLiGD~~QLpPvV~s~~~~~~gl~~SLFeR 337 (1939)
.++|+||++.+.. ..+....||++|||||||++++.+++|+.. ++++|++|||+||||++.+......++..|+|+|
T Consensus 469 ~~~~~~~~~~a~~-~~~~~~~fd~viiDEAsQ~~~~~~~~~l~~--~~~~il~GD~kQL~p~~~~~~~~~~~~~~slf~~ 545 (767)
T COG1112 469 ADVVLSTLSIAGF-SILKKYEFDYVIIDEASQATEPSALIALSR--AKKVILVGDHKQLPPTVFFKESSPEGLSASLFER 545 (767)
T ss_pred cCeEEEeccchhH-HHhcccccCEEEEcchhcccchhHHHhHhh--cCeEEEecCCccCCCeecchhhcccchhHhHHHH
Confidence 3566666655432 223333799999999999999999999976 6899999999999999976544567899999999
Q ss_pred HHhcCC-ccccccccccCChhhhccCcccccCCCCCCCCcccccccccccCCCC-CCCCeEEEEcCCCccc-cCCCCcCC
Q 035724 338 LSNLGQ-AKHLLSIQYRMHPSISSFPNSYFYDNKIFDSPNVKEKNYEKRFLPGR-MYGPYSFINVLDGREE-SIAHSYRN 414 (1939)
Q Consensus 338 L~~~~~-~~~~L~~QYRmhp~I~~f~S~~FY~gkL~~~~~v~~~~~~~~~l~~p-~~~p~~Fidv~~G~Ee-~~g~S~~N 414 (1939)
+...+. ...+|+.||||||.|+.|+|..||+|+|..+++...........+.+ ...|+.|+++ .|.++ ..+.|..|
T Consensus 546 ~~~~~~~~~~~L~~qyRm~~~i~~f~s~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~n 624 (767)
T COG1112 546 LIDNGPEVVYLLRVQYRMHPDIIAFSSKVFYNGRLEVHTSFLAFTLLDGEIPEVVISNPLEFYDT-LGAEEFFESKSKLN 624 (767)
T ss_pred HHHhCCchheeeeeecccChhhhhCchhhccCCccccCcchhhhhhhccccccccccCceEEEEe-cCcccccCccceec
Confidence 999875 88999999999999999999999999999998776543222111111 1358999999 66555 78899999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCcceE---------------e-----e---eeeec-------------ccc-------c
Q 035724 415 MVEVFVVMKILLNLYKVHNVSNLCSS---------------L-----M---KKCIN-------------VKY-------F 451 (1939)
Q Consensus 415 ~~EA~~V~~lV~~L~~~~~~~~~~I~---------------L-----~---ktVDg-------------VRS-------G 451 (1939)
..||..|..++..+++.+..... |+ + + .|||+ ||| |
T Consensus 625 ~~e~~~~~~~~~~~~~~~~~~~~-igvis~y~~q~~~i~~~~~~~~~~v~v~tvd~fQG~EkdvIi~S~v~s~~~~~~i~ 703 (767)
T COG1112 625 ELEAEIVKVIVDELLKDGLEEND-IGVISPYRAQVSLIRRLLNEAGKGVEVGTVDGFQGREKDVIILSLVRSNDDKGEIG 703 (767)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHH-cceecccHHHHHHHHHHHHhcCCceEEeeccccCCccCcEEEEEEEeecCCCcccc
Confidence 99999999999999998766543 33 1 1 16665 665 7
Q ss_pred ccc------------eeEEEEEcchHHhhhcchHHHHHHHHHHHcCceecCc
Q 035724 452 FLS------------MHCLWILGNARTLTRKKSVWEALVHDANARQCFFNAE 491 (1939)
Q Consensus 452 FLs------------K~~LiIVGN~~tL~~~~~~W~~li~~~k~rgc~~~~~ 491 (1939)
|+. |++|||||+..++.. .+.|+.++.++++++++....
T Consensus 704 ~l~d~rRLNVAlTRAk~~livvg~~~~l~~-~~~~~~~~~~~~~~~~~~~~~ 754 (767)
T COG1112 704 FLGDPRRLNVALTRAKRKLIVVGSSSTLES-DPLYKRLINDLKRKGLLAELN 754 (767)
T ss_pred ccCchhhhhhhhhcccceEEEEcChhHhhh-chhHHHHHHHHHhcCcEeecc
Confidence 776 999999999999998 599999999999999998875
No 9
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.84 E-value=7.2e-20 Score=220.35 Aligned_cols=260 Identities=16% Similarity=0.212 Sum_probs=212.0
Q ss_pred chhHHHHHhhccceehcccchHHHHHhhhcCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhh--
Q 035724 1033 SKPMFDYWKKKSLVQVRQLDDSLAQAMQVASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATAD-- 1110 (1939)
Q Consensus 1033 ~~Pm~~yw~~~~Lvqv~~lde~l~~~l~v~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~-- 1110 (1939)
..+|++|.+...+-++.+ ....+.+..||+.+|+.++...+++.|.++|+|..|..+.++.-....+....
T Consensus 560 ~~~m~q~Ieag~f~ea~~-------iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~ 632 (1081)
T KOG1538|consen 560 SAPMYQYIERGLFKEAYQ-------IACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGET 632 (1081)
T ss_pred cccchhhhhccchhhhhc-------ccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Confidence 478999999888775532 22337888899999999999999999999999999988877665544332221
Q ss_pred --hhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChH---HHHHHHHHHHHcCCHHHHHHH
Q 035724 1111 --RCRSSNPKQANVNLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEP---ELEKAGECFFLAGCYKLAADV 1185 (1939)
Q Consensus 1111 --~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~---~~~qaAe~fE~~G~y~eAAel 1185 (1939)
++..++.-.+++.|+|||++|.++|.-.+|.+||.+.+||+.|.|......++. .+++.|+|....++.+.|||+
T Consensus 633 P~~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEm 712 (1081)
T KOG1538|consen 633 PNDLLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEM 712 (1081)
T ss_pred chHHHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHH
Confidence 112222334788999999999999999999999999999999999977654332 378999999999999999999
Q ss_pred HHHccCHHHHHHHHHhcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHH
Q 035724 1186 YAKGKFFSECLAVCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMK 1265 (1939)
Q Consensus 1186 Y~kagd~dkAI~my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~ 1265 (1939)
...+|+.+|||+++..+++.|.++.+.++.. ..+.+-++.|+.++.+...+
T Consensus 713 LiSaGe~~KAi~i~~d~gW~d~lidI~rkld------------------------~~ere~l~~~a~ylk~l~~~----- 763 (1081)
T KOG1538|consen 713 LISAGEHVKAIEICGDHGWVDMLIDIARKLD------------------------KAEREPLLLCATYLKKLDSP----- 763 (1081)
T ss_pred hhcccchhhhhhhhhcccHHHHHHHHHhhcc------------------------hhhhhHHHHHHHHHhhcccc-----
Confidence 9999999999999999999999998887422 22444455666666665533
Q ss_pred HHHHhccHHHHHHHHHhhcCHHHHHHHHHhcCCHHHHHHHHHHc------------------CCHHHHHHHHHHhCCHHH
Q 035724 1266 FVKSFRSVDLMRKFLKSLSCFDDLLVLEEESGNFMDAANIARLR------------------GDIFLAVDLLQKAGCFKE 1327 (1939)
Q Consensus 1266 ~~~~~~s~eeA~~~L~k~~~ldea~ell~e~G~feEAa~Lak~~------------------Gk~~eAi~my~kAG~~~e 1327 (1939)
--|.+++++.|++..+++++++.++|.|||.+|+.| +++.||.++|++||+..+
T Consensus 764 --------gLAaeIF~k~gD~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~E 835 (1081)
T KOG1538|consen 764 --------GLAAEIFLKMGDLKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQRE 835 (1081)
T ss_pred --------chHHHHHHHhccHHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHH
Confidence 346677888999999999999999999999999987 789999999999999999
Q ss_pred HHHHHHHHh
Q 035724 1328 ACNVTLNHV 1336 (1939)
Q Consensus 1328 A~rva~~~~ 1336 (1939)
|+++++|-.
T Consensus 836 A~~vLeQLt 844 (1081)
T KOG1538|consen 836 AVQVLEQLT 844 (1081)
T ss_pred HHHHHHHhh
Confidence 999999763
No 10
>KOG1804 consensus RNA helicase [RNA processing and modification]
Probab=99.81 E-value=1.1e-20 Score=242.24 Aligned_cols=230 Identities=22% Similarity=0.218 Sum_probs=174.7
Q ss_pred CcEEEEcccchhhH--HhhhccCCcEEEEeCCcccchHHhhccccCC-CcceEEEEeccccCCcceeccccccccccCCH
Q 035724 258 ASLIFCTASSSYKL--HRVAMEQLKFLVIDEAAQLKEVESAIPLKLP-GIQHAILIGDECQLPAMVESSVSGEACLGRSL 334 (1939)
Q Consensus 258 a~vI~~T~sss~~l--~~l~~~~fdvVIIDEASQ~~E~e~lipL~~~-~~~rlVLiGD~~QLpPvV~s~~~~~~gl~~SL 334 (1939)
.+++++|++++..+ ...+-.+|.++++|||++.+|+++++|+... ...++||.|||+||+|++.|..+.+.|++.||
T Consensus 420 ~~i~i~t~~sag~~~~~g~~v~~f~hil~DeAg~stEpe~lv~i~~~~~~~~vvLsgdh~Qlgpv~~s~~A~~~gl~rsL 499 (775)
T KOG1804|consen 420 YRWGITTCTSAGCVTSYGFQVGHFRHILVDEAGVSTEPELLVPGKQFRQPFQVVLSGDHTQLGPVSKSARAEELGLDRSL 499 (775)
T ss_pred eEEEEeeccceeeeecccccccceeeeeecccccccCcccccccccccceeEEEEccCcccccccccchhhhhhcccHHH
Confidence 35666676555433 2345678999999999999999999998532 23489999999999999999999999999999
Q ss_pred HHHHHhcC------------CccccccccccCChhhhccCcccccCCCCCCCCcccccccccccCCCCCCCCeEEEEcCC
Q 035724 335 FERLSNLG------------QAKHLLSIQYRMHPSISSFPNSYFYDNKIFDSPNVKEKNYEKRFLPGRMYGPYSFINVLD 402 (1939)
Q Consensus 335 FeRL~~~~------------~~~~~L~~QYRmhp~I~~f~S~~FY~gkL~~~~~v~~~~~~~~~l~~p~~~p~~Fidv~~ 402 (1939)
|+|+.... ...+.|..+||+||.|...+|+.||++.|............. .+ +..++|.-+ .
T Consensus 500 ler~l~r~~~~~~~~g~~~~l~~t~l~rnyrshp~il~l~~~l~y~~eL~~~~~~~~v~~~~-~w----~~liif~g~-~ 573 (775)
T KOG1804|consen 500 LERALTRAQSLVAVVGDYNALCSTGLCRNYRSHPIILCLENRLYYLGELTAEASEVDVRGLE-LW----SGLILFYGA-P 573 (775)
T ss_pred HHHHHHHHhhccccCCCcccccchhhHHHHhhhhHhhhcccccccccceeeeccHHHHHHHH-hc----ccceecccc-c
Confidence 99998752 245789999999999999999999999999776554432111 11 123777877 7
Q ss_pred Cccc--cCCCCcCCHHHHHHHHHHHHHHHHcCCCCCcceEeee-------------------------------------
Q 035724 403 GREE--SIAHSYRNMVEVFVVMKILLNLYKVHNVSNLCSSLMK------------------------------------- 443 (1939)
Q Consensus 403 G~Ee--~~g~S~~N~~EA~~V~~lV~~L~~~~~~~~~~I~L~k------------------------------------- 443 (1939)
|..+ ..+.|+.|..||+.|..++..|........++|++..
T Consensus 574 G~~~r~~~s~S~~n~~Ea~~V~~~~k~l~~~~~~~~~DIgvitpy~aq~~~i~~~l~~~~~~~~~vgsVe~fqGqE~~vi 653 (775)
T KOG1804|consen 574 GFTERAGNSPSWLNLEEAAVVVRMTKALPLGEVAQPQDIGVITPYTAQVSEIRKALRRLGVPGVKVGSVEEFQGQEPWVI 653 (775)
T ss_pred cccccccCChhhccHHHHHHHHHHHhccCCCCccccccceeeCcHHHHHHHHHHHhcccCCCCCcccceeeeccccceee
Confidence 7665 5566999999999999999999888776666665110
Q ss_pred eeecccc------------cccc--eeEEEEEcchHH----------hhhcchHHHHHHHHHHHcCceecCccch
Q 035724 444 KCINVKY------------FFLS--MHCLWILGNART----------LTRKKSVWEALVHDANARQCFFNAEDEE 494 (1939)
Q Consensus 444 tVDgVRS------------GFLs--K~~LiIVGN~~t----------L~~~~~~W~~li~~~k~rgc~~~~~~~~ 494 (1939)
.+.+||| +|++ |.-++-||++.+ +.. ++.|+.++..+.++|.+...+...
T Consensus 654 iiStVrS~~~~~~~~~~~~~fls~pk~l~v~V~rp~~l~i~~~~~h~~~~-~~~~~~~l~~~~~n~~y~~c~~~~ 727 (775)
T KOG1804|consen 654 LGSTVRSFALPLLDDRYFGLFLSRPKRLLVAVGRPRALLINLGNPHLLGG-DPPWGLLLLLRVENGRYPGCDFPP 727 (775)
T ss_pred EeecccccCCCcccccccceeecCcccceeeccCccccccccCCcccccC-CCChhhheeeeecCCcccCCCCCc
Confidence 1112887 4677 555555555554 444 699999999999999998886544
No 11
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=99.79 E-value=1.2e-19 Score=207.35 Aligned_cols=65 Identities=35% Similarity=0.520 Sum_probs=42.0
Q ss_pred cCCcEEEEcccchhhHHhhhcc--CCcEEEEeCCcccchHHhhccccCCCcceEEEEeccccCCcceec
Q 035724 256 TKASLIFCTASSSYKLHRVAME--QLKFLVIDEAAQLKEVESAIPLKLPGIQHAILIGDECQLPAMVES 322 (1939)
Q Consensus 256 ~~a~vI~~T~sss~~l~~l~~~--~fdvVIIDEASQ~~E~e~lipL~~~~~~rlVLiGD~~QLpPvV~s 322 (1939)
..++||+||++++... .+... .||+||||||||++|+++++|+.. +.+++||+|||+||||++.|
T Consensus 169 ~~~~vi~~T~~~~~~~-~~~~~~~~~d~vIvDEAsq~~e~~~l~~l~~-~~~~~vlvGD~~QLpP~v~s 235 (236)
T PF13086_consen 169 KEADVIFTTLSSAASP-FLSNFKEKFDVVIVDEASQITEPEALIPLSR-APKRIVLVGDPKQLPPVVKS 235 (236)
T ss_dssp HT-SEEEEETCGGG-C-CGTT-----SEEEETTGGGS-HHHHHHHHTT-TBSEEEEEE-TTS-----S-
T ss_pred ccccccccccccchhh-HhhhhcccCCEEEEeCCCCcchHHHHHHHHH-hCCEEEEECChhhcCCeeCC
Confidence 3467888888777322 22222 899999999999999999999965 34999999999999999976
No 12
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=7.2e-17 Score=195.96 Aligned_cols=269 Identities=15% Similarity=0.103 Sum_probs=206.9
Q ss_pred ceehcccchHHHHHhhhcCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHH
Q 035724 1045 LVQVRQLDDSLAQAMQVASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNL 1124 (1939)
Q Consensus 1045 Lvqv~~lde~l~~~l~v~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y 1124 (1939)
|++.+.+++. .+.+..+.+|+.|+.+|.+++.+..++.|.++|.|+||+...++.+...-.- ....+..+...+-+.|
T Consensus 673 Lve~vgledA-~qfiEdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~-s~~~q~aei~~~~g~f 750 (1189)
T KOG2041|consen 673 LVEAVGLEDA-IQFIEDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIH-SKEQQRAEISAFYGEF 750 (1189)
T ss_pred HHHHhchHHH-HHHHhcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhh-hHHHHhHhHhhhhcch
Confidence 3344443332 3444458999999999999999999999999999999999988887765210 0111112233466789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcC-------hHHHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHH
Q 035724 1125 REAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERRE-------EPELEKAGECFFLAGCYKLAADVYAKGKFFSECLA 1197 (1939)
Q Consensus 1125 ~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~-------e~~~~qaAe~fE~~G~y~eAAelY~kagd~dkAI~ 1197 (1939)
.||.++|..+++-+.|++++.+.|+|-+..++|+...+ +..++..|+.|.....|.+|+++|.++++.+.-++
T Consensus 751 eeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~e 830 (1189)
T KOG2041|consen 751 EEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIE 830 (1189)
T ss_pred hHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHH
Confidence 99999999999999999999999999999999987421 23488899999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHH
Q 035724 1198 VCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRSVDLMR 1277 (1939)
Q Consensus 1198 my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s~eeA~ 1277 (1939)
++..+++|++...+++..++..+..|.++ ..+++.+ .-++|..+|++.++.++|+..+..+++|.+|.
T Consensus 831 cly~le~f~~LE~la~~Lpe~s~llp~~a---~mf~svG---------MC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~av 898 (1189)
T KOG2041|consen 831 CLYRLELFGELEVLARTLPEDSELLPVMA---DMFTSVG---------MCDQAVEAYLRRSLPKAAVHTCVELNQWGEAV 898 (1189)
T ss_pred HHHHHHhhhhHHHHHHhcCcccchHHHHH---HHHHhhc---------hHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999998877544332222 1111211 23566888999999999999999999999998
Q ss_pred HHHHhhcCHHHHHHHHHhcCCHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHH
Q 035724 1278 KFLKSLSCFDDLLVLEEESGNFMDAANIARLRGDIFLAVDLLQKAGCFKEACNVTLN 1334 (1939)
Q Consensus 1278 ~~L~k~~~ldea~ell~e~G~feEAa~Lak~~Gk~~eAi~my~kAG~~~eA~rva~~ 1334 (1939)
+..+.+ .+.+...+..+ .|+++ .+.++..||++++.+||++-+|.|++.+
T Consensus 899 elaq~~-~l~qv~tliak-----~aaql-l~~~~~~eaIe~~Rka~~~~daarll~q 948 (1189)
T KOG2041|consen 899 ELAQRF-QLPQVQTLIAK-----QAAQL-LADANHMEAIEKDRKAGRHLDAARLLSQ 948 (1189)
T ss_pred HHHHhc-cchhHHHHHHH-----HHHHH-HhhcchHHHHHHhhhcccchhHHHHHHH
Confidence 877754 45555554432 23333 3468888999999999999999888764
No 13
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.68 E-value=6.4e-16 Score=187.46 Aligned_cols=265 Identities=18% Similarity=0.222 Sum_probs=193.2
Q ss_pred HHHHHHh-hCHHHHHHHHHHhCCcchHHHHHHhh--hHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHHHHhC
Q 035724 1072 GIKLFHE-HNYDMATICFEKAKDSYWEGRSKATG--LKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCFYNLG 1148 (1939)
Q Consensus 1072 G~~l~~q-~~yd~A~kcF~rAgd~~~~~l~kA~~--l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy~kag 1148 (1939)
|.-|++. +.||+|+...+--|.+.++++...|. +.++.+. .+||++=++-|+--.|+++|+++|
T Consensus 563 aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd-------------~ka~elk~sdgd~laaiqlyika~ 629 (1636)
T KOG3616|consen 563 AIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQD-------------EKAAELKESDGDGLAAIQLYIKAG 629 (1636)
T ss_pred HHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCch-------------hhhhhhccccCccHHHHHHHHHcC
Confidence 3334444 78999998888888888887776663 2233332 356666666666666666666666
Q ss_pred CHHHHHHHHHHh----cChHHHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHHHHHhcCChHHHHHHHH-----------
Q 035724 1149 EYERAGRIYLER----REEPELEKAGECFFLAGCYKLAADVYAKGKFFSECLAVCSKGKLFEIGLQYMN----------- 1213 (1939)
Q Consensus 1149 ~~~~A~eLY~e~----~~e~~~~qaAe~fE~~G~y~eAAelY~kagd~dkAI~my~k~k~fd~airLv~----------- 1213 (1939)
-.-+|....... .++..++++|..+-+..-|++|-.+|+|..+|+||+++|.|+.-|.+|+++.+
T Consensus 630 ~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~le 709 (1636)
T KOG3616|consen 630 KPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLE 709 (1636)
T ss_pred CchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHH
Confidence 666666554321 12233555555555555566666666666666666666666665655555555
Q ss_pred -hhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHH-------hhcC
Q 035724 1214 -HWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRSVDLMRKFLK-------SLSC 1285 (1939)
Q Consensus 1214 -q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s~eeA~~~L~-------k~~~ 1285 (1939)
.|.+|++ ....+++|.+||+++++...|+++-.....|-.|..++. .-+.
T Consensus 710 e~wg~hl~----------------------~~~q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~~s~y 767 (1636)
T KOG3616|consen 710 EAWGDHLE----------------------QIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGY 767 (1636)
T ss_pred HHHhHHHH----------------------HHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhcccccc
Confidence 4444332 334678889999999999999998888888888776643 3477
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHHh----hhhccccCCCCCCCCcchhhHHHHH
Q 035724 1286 FDDLLVLEEESGNFMDAANIARLRGDIFLAVDLLQKAGCFKEACNVTLNHV----ISNSLWSPGSKGWPLKQFTKKKELL 1361 (1939)
Q Consensus 1286 ldea~ell~e~G~feEAa~Lak~~Gk~~eAi~my~kAG~~~eA~rva~~~~----~~~~l~~~~~~~~~~~~~~~ae~ll 1361 (1939)
+.+.+++|...|.|+-|.+++...|.+..|++||.++|+|.+|.+++..+. ...+++++|..--+.+.|.+||+|+
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 899999999999999999999999999999999999999999999999984 7888999999999999999999998
Q ss_pred H------HHHhHhhhh
Q 035724 1362 E------KAKSLAKNE 1371 (1939)
Q Consensus 1362 ~------~A~~~~~~~ 1371 (1939)
. +|..|-|+.
T Consensus 848 iti~~p~~aiqmydk~ 863 (1636)
T KOG3616|consen 848 ITIGEPDKAIQMYDKH 863 (1636)
T ss_pred EEccCchHHHHHHHhh
Confidence 4 677766654
No 14
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=99.61 E-value=1.7e-15 Score=195.36 Aligned_cols=197 Identities=24% Similarity=0.274 Sum_probs=123.2
Q ss_pred EEEEecccccHHHHHHHHHhccChhHHHHhhcCCCCcccccccCCCcCCCccccccCCCCCCCCCHHHHHHHHHHHhccc
Q 035724 146 FAIFLTNVTSNTRIWNSLHMSGNLKIIKELLCTDSVVKEDCELCPVQSDGIWNDIFGPSLSSTLNDSQAQAVLSCLRRTH 225 (1939)
Q Consensus 146 ~vv~l~N~~t~~R~~~AL~~~~~~~ii~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LN~sQ~~AV~~~L~~~~ 225 (1939)
++++..+.+|.+|+|+++..++.. +..+....... .....+..+|+... -.++|+.|+..++.
T Consensus 97 PLvl~~~~lYl~r~~~~E~~ia~~--l~~~~~~~~~~---------~~~~~l~~~~~~~~---~~~~Qk~A~~~al~--- 159 (586)
T TIGR01447 97 PLVLCDGRLYLRRYWREEEKLAAK--LRTLLEARKRT---------APSAILENLFPLLN---EQNWQKVAVALALK--- 159 (586)
T ss_pred CEEEECCEEEehHHHHHHHHHHHH--HHHHhccCCCC---------cchHHHHHhhcccc---ccHHHHHHHHHHhh---
Confidence 455566789999999999988654 33333221110 00122344453321 23799999999998
Q ss_pred CCCCCcEEEEeCCCCCchhHHHHHHHHHHhcC------CcEEEEcccc------------------------------hh
Q 035724 226 CDHKATVELIWGPPGTGKTKTVSMLLDFCFTK------ASLIFCTASS------------------------------SY 269 (1939)
Q Consensus 226 ~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~------a~vI~~T~ss------------------------------s~ 269 (1939)
+++++|+||||||||||+..++..+... .+|+++++++ +.
T Consensus 160 ----~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~~~~~~~~~~~a~ 235 (586)
T TIGR01447 160 ----SNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAAEALIAALPSEAV 235 (586)
T ss_pred ----CCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccchhhhhccccccc
Confidence 6899999999999999999998665431 3577664332 11
Q ss_pred hHHhh---------------hccCCcEEEEeCCcccchHHhhccc-cCCCcceEEEEeccccCCcceecc----cccccc
Q 035724 270 KLHRV---------------AMEQLKFLVIDEAAQLKEVESAIPL-KLPGIQHAILIGDECQLPAMVESS----VSGEAC 329 (1939)
Q Consensus 270 ~l~~l---------------~~~~fdvVIIDEASQ~~E~e~lipL-~~~~~~rlVLiGD~~QLpPvV~s~----~~~~~g 329 (1939)
++|++ +..++|+||||||||+..+...-.+ ..++..|+||+||+.||||+-.+. ++....
T Consensus 236 TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~~l~~~ll~al~~~~rlIlvGD~~QLpsV~~G~vl~dl~~~~~ 315 (586)
T TIGR01447 236 TIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDLPLMAKLLKALPPNTKLILLGDKNQLPSVEAGAVLGDLCELAS 315 (586)
T ss_pred hhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCHHHHHHHHHhcCCCCEEEEECChhhCCCCCCChhHHHHHHhhc
Confidence 22221 2346799999999999988543222 345678999999999999995432 222111
Q ss_pred --ccCCHHHHHHh-----------cCCccccccccccCCh--hhhccCc
Q 035724 330 --LGRSLFERLSN-----------LGQAKHLLSIQYRMHP--SISSFPN 363 (1939)
Q Consensus 330 --l~~SLFeRL~~-----------~~~~~~~L~~QYRmhp--~I~~f~S 363 (1939)
+....-..+.. .....++|++.||... .|..+..
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~~~R~~~~S~I~~lA~ 364 (586)
T TIGR01447 316 IGYLFQSAQAYALCKKINSKTRNPLSDNVCFLKTSHRFGKDSGIGQLAK 364 (586)
T ss_pred cccchhhhhhhcccccccccccCCCCCcEEEeceeecCCCCccHHHHHH
Confidence 10000000100 1123789999999965 5777765
No 15
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=99.60 E-value=1.9e-15 Score=170.96 Aligned_cols=150 Identities=25% Similarity=0.267 Sum_probs=96.6
Q ss_pred CCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhc-CCcEEEEcccchhh--H-----------Hh
Q 035724 208 TLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFT-KASLIFCTASSSYK--L-----------HR 273 (1939)
Q Consensus 208 ~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~-~a~vI~~T~sss~~--l-----------~~ 273 (1939)
.||++|++|+..++.+. .++.+|+||||||||+++..+++.+.. ..+|++++.+.... + +.
T Consensus 1 ~L~~~Q~~a~~~~l~~~-----~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~ 75 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSG-----DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHS 75 (196)
T ss_dssp -S-HHHHHHHHHHHHCT-----CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHH
T ss_pred CCCHHHHHHHHHHHhcC-----CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHH
Confidence 48999999999999742 579999999999999999998866654 35777765543221 1 11
Q ss_pred h-----h--------ccCCcEEEEeCCcccchHHhhccc--cCCCcceEEEEeccccCCcceeccccccccccCCHHHHH
Q 035724 274 V-----A--------MEQLKFLVIDEAAQLKEVESAIPL--KLPGIQHAILIGDECQLPAMVESSVSGEACLGRSLFERL 338 (1939)
Q Consensus 274 l-----~--------~~~fdvVIIDEASQ~~E~e~lipL--~~~~~~rlVLiGD~~QLpPvV~s~~~~~~gl~~SLFeRL 338 (1939)
+ . ..+.++||||||||+........+ ......++|++||++||||+.. .+.|.-+
T Consensus 76 ~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~~~~klilvGD~~QL~pV~~----------g~~~~~l 145 (196)
T PF13604_consen 76 FLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKKSGAKLILVGDPNQLPPVGA----------GSPFADL 145 (196)
T ss_dssp HTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T-T-EEEEEE-TTSHHHCST----------TCHHHHH
T ss_pred HHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHHhcCCEEEEECCcchhcCCcC----------CcHHHHH
Confidence 1 0 245699999999999987554332 3333679999999999999973 3567777
Q ss_pred HhcCCccccccccccCChhhhccCcccccCCCCC
Q 035724 339 SNLGQAKHLLSIQYRMHPSISSFPNSYFYDNKIF 372 (1939)
Q Consensus 339 ~~~~~~~~~L~~QYRmhp~I~~f~S~~FY~gkL~ 372 (1939)
...+...+.|++.+|....-..-.+..+-+|...
T Consensus 146 ~~~~~~~~~L~~i~Rq~~~~~~~~~~~~~~g~~~ 179 (196)
T PF13604_consen 146 QESGGITVELTEIRRQKDPELREAAKAIREGDAE 179 (196)
T ss_dssp CGCSTTEEEE---SCCCCTHHHHHHHHHCTT---
T ss_pred HhcCCCeEEeChhhcCCChHHHHHHHHHHcCCCc
Confidence 7766668999999999843333444455555433
No 16
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=99.60 E-value=2.9e-15 Score=193.42 Aligned_cols=159 Identities=25% Similarity=0.325 Sum_probs=106.2
Q ss_pred EEEEecccccHHHHHHHHHhccChhHHHHhhcCCCCcccccccCCCcCCCccccccCCCCCCCCCHHHHHHHHHHHhccc
Q 035724 146 FAIFLTNVTSNTRIWNSLHMSGNLKIIKELLCTDSVVKEDCELCPVQSDGIWNDIFGPSLSSTLNDSQAQAVLSCLRRTH 225 (1939)
Q Consensus 146 ~vv~l~N~~t~~R~~~AL~~~~~~~ii~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LN~sQ~~AV~~~L~~~~ 225 (1939)
++++.-+.+|++|+|++++.++.. +..+..+.... +......+...|+.. ....++|+.|+..++.
T Consensus 101 Plvl~~~~lYl~ry~~~E~~iA~~--l~~~~~~~~~~-------~~~~~~~l~~lf~~~--~~~~d~Qk~Av~~a~~--- 166 (615)
T PRK10875 101 PLVLCGDRLYLQRMWQNERTVARF--FNEVNHAIEVD-------EALLRQTLDALFGPV--TDEVDWQKVAAAVALT--- 166 (615)
T ss_pred CEEEECCEEEeHHHHHHHHHHHHH--HHHhccCCCCC-------hHHHHHHHHHhcCcC--CCCCHHHHHHHHHHhc---
Confidence 566667889999999999988754 33333211110 001112234455432 2346899999999998
Q ss_pred CCCCCcEEEEeCCCCCchhHHHHHHHHHHhcC-----CcEEEEcccc------------------------------hhh
Q 035724 226 CDHKATVELIWGPPGTGKTKTVSMLLDFCFTK-----ASLIFCTASS------------------------------SYK 270 (1939)
Q Consensus 226 ~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~-----a~vI~~T~ss------------------------------s~~ 270 (1939)
+++++|+||||||||||+..++..+.+. .+|.++++++ +.+
T Consensus 167 ----~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~T 242 (615)
T PRK10875 167 ----RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEAST 242 (615)
T ss_pred ----CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHH
Confidence 6899999999999999999998665432 3455553222 122
Q ss_pred HHhh---------------hccCCcEEEEeCCcccchHHhhccc-cCCCcceEEEEeccccCCcceec
Q 035724 271 LHRV---------------AMEQLKFLVIDEAAQLKEVESAIPL-KLPGIQHAILIGDECQLPAMVES 322 (1939)
Q Consensus 271 l~~l---------------~~~~fdvVIIDEASQ~~E~e~lipL-~~~~~~rlVLiGD~~QLpPvV~s 322 (1939)
+|++ ++.++|+||||||||+..+.....+ +.++..|+||+||+.||||+-.+
T Consensus 243 iHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~~~~rlIlvGD~~QL~sV~~G 310 (615)
T PRK10875 243 LHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALPPHARVIFLGDRDQLASVEAG 310 (615)
T ss_pred HHHHhCcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcccCCEEEEecchhhcCCCCCC
Confidence 2222 1245699999999999987544322 34567899999999999999644
No 17
>PRK11054 helD DNA helicase IV; Provisional
Probab=99.56 E-value=3.5e-14 Score=186.11 Aligned_cols=174 Identities=21% Similarity=0.279 Sum_probs=105.0
Q ss_pred CCcCCCCCCCchhHHHHHhH----HHhhccccccchhh----------cchhhh----h---------------------
Q 035724 845 NSFADIPAESHPLVITFHKF----LMMLDGTLGSSYFE----------RFHDIR----K--------------------- 885 (1939)
Q Consensus 845 ~~~~dl~~~~~pLfit~r~~----l~iLd~~l~~s~~~----------~f~~~~----~--------------------- 885 (1939)
|-|||+.+-.+.|...+.+- ..++=||-.+++|. .|.+.. .
T Consensus 437 DE~QD~s~~q~~ll~~l~~~~~~~~l~~VGD~~QsIY~frGa~~~~~~~f~~~f~~~~~~~L~~nYRs~~~I~~~An~~i 516 (684)
T PRK11054 437 DEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGADLSLTTAFHERFGEGDRCHLDTTYRFNSRIGEVANRFI 516 (684)
T ss_pred EccccCCHHHHHHHHHHhccCCCCeEEEEECCCccccccCCCChHHHHHHHhhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Confidence 56799988888888887642 12344788888874 111100 0
Q ss_pred -cc--C--CCccccccCCCCEEEcccCcH-HHHHHHhhccCCCCCCccccCceEEEEEcChhHHHHHhhhh----CC-ce
Q 035724 886 -HH--G--QPETSLIYGEPPILLESRNDE-NAIIKIFGNSGDAGGNMVGFGAEQVILVRDDCVRKEISNYV----GK-QA 954 (1939)
Q Consensus 886 -~~--g--~~e~s~~~Gp~P~l~~~~~~~-~~~~~~~~~~~~~~~~~~efga~q~IlVr~~~~k~~i~~~l----~~-~~ 954 (1939)
+. . .+-.+...|++|.+....+++ ..++..+..... + |...+||+|+...+..+.+.. .. ..
T Consensus 517 ~~n~~~~~k~l~s~~~g~~p~v~~~~~~~~~~il~~l~~~~~----~---~~~I~IL~R~~~~~~~~l~~~~~~~~~~~i 589 (684)
T PRK11054 517 QQNPHQLKKPLNSLTKGDKKAVTLLPEDQLEALLDKLSGYAK----P---DERILLLARYHHLRPALLDKAATRWPKLQI 589 (684)
T ss_pred HhCccccCCcccccCCCCCceEEEeCCHHHHHHHHHHHHhhc----C---CCcEEEEEechhhHHHHHHHHHhhcccCCe
Confidence 00 0 234567889999887554433 344444443321 1 335689999987776554432 22 23
Q ss_pred EEEEeecccCCCCCEEEEeccCCCC-Cccc-cccCCCCCCCCCChhHhhhhhHHHHhhhheeeeccccceEEEecc
Q 035724 955 LVLTIVESKGLEFQVIHYTSQCCNS-PFKH-ALFDSTSPGSFPSFNEAKHNVLCSELKQLYVAITRTRQRLWIWEN 1028 (1939)
Q Consensus 955 lVmTihesKGLEF~~Vil~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~l~~Elk~LYVA~TRAr~~L~I~d~ 1028 (1939)
.+||+|.|||||||.||++++..+. ..+. ...++.... ..+........+|+++||||+||||++|+|+-+
T Consensus 590 ~~~T~h~sKGLEfD~ViI~g~~~g~~gfP~~~~~~~~~~~---~~~~~~~~~~~eERRLlYVAlTRAr~~l~i~~~ 662 (684)
T PRK11054 590 DFMTIHASKGQQADYVIILGLQEGQDGFPAPARESIMEEA---LLPPPEDFPDAEERRLLYVALTRAKHRVWLLFN 662 (684)
T ss_pred EEEehhhhcCCcCCEEEEecCCcCcccCCcccccchhhhc---ccccccccccHHHHHHHHHHhhhhhcEEEEEEc
Confidence 4999999999999999999986541 0010 000000000 001111223467999999999999999999875
No 18
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=99.54 E-value=3.7e-15 Score=188.67 Aligned_cols=177 Identities=28% Similarity=0.314 Sum_probs=131.8
Q ss_pred cCCcEEEEcccchhhH-Hhh--hccCCcEEEEeCCcccchHHhhccccCC----C---cceEEEEeccccCCcceecc-c
Q 035724 256 TKASLIFCTASSSYKL-HRV--AMEQLKFLVIDEAAQLKEVESAIPLKLP----G---IQHAILIGDECQLPAMVESS-V 324 (1939)
Q Consensus 256 ~~a~vI~~T~sss~~l-~~l--~~~~fdvVIIDEASQ~~E~e~lipL~~~----~---~~rlVLiGD~~QLpPvV~s~-~ 324 (1939)
+.+++|.||+..+..- ..+ ....+|=+++.|++|++|.+..+|+... + .+++|++|||.|+||++... .
T Consensus 966 kqakiiamtcthaalkr~el~~lgf~ydnl~mEesaqile~etfiplLlq~p~dg~~rlkr~iligdhhqlPPv~~n~af 1045 (1320)
T KOG1806|consen 966 KQAKIIAMTCTHAALRRGDLVKLGFKYDNLLMEESAQILEIETFIPLLLQNPQDGHNRLKRWILIGDHHQLPPVVKNQAF 1045 (1320)
T ss_pred ccceeeecccCChhhChhhHhhhceeechhhhhhccCCcccccccHHHhcCCcchhhHhhheeecccccccCCcccchHH
Confidence 4578888898765422 222 3456799999999999999999998532 2 57999999999999999554 4
Q ss_pred cccccccCCHHHHHHhcCCccccccccccCChhhhccCcccccCCCCCCCCcccccccccccCCCCCCCCeEEEEcCC--
Q 035724 325 SGEACLGRSLFERLSNLGQAKHLLSIQYRMHPSISSFPNSYFYDNKIFDSPNVKEKNYEKRFLPGRMYGPYSFINVLD-- 402 (1939)
Q Consensus 325 ~~~~gl~~SLFeRL~~~~~~~~~L~~QYRmhp~I~~f~S~~FY~gkL~~~~~v~~~~~~~~~l~~p~~~p~~Fidv~~-- 402 (1939)
......+.|+|.|+.+.+.+.+-|+.|+|-.+.|+.+.+..+-. |.+.+.+...+..+..-.+. ..++.|||+++
T Consensus 1046 qkysnm~qslf~r~vRl~ip~i~lnaqgrar~sI~~Ly~wry~l--Lg~l~~v~~lp~f~~aNagf-~~~~qlinv~Df~ 1122 (1320)
T KOG1806|consen 1046 QKYSNMEQSLFTRLVRLGVPIIDLNAQGRARASIASLYNWRYPL--LGNLPHVSPLPRFQYANAGF-AYEFQFINVPDFK 1122 (1320)
T ss_pred HHHhcchhhhhhcceecccceecchhhhhHHHHHHHHHHhhhcc--cccCcCCccchhhhccccCc-eeeEEEecchhhc
Confidence 55556789999999999999999999999999999999976443 44444443322112111222 23899999963
Q ss_pred Cc--cccCCCCcCCHHHHHHHHHHHHHHHHcCCCC
Q 035724 403 GR--EESIAHSYRNMVEVFVVMKILLNLYKVHNVS 435 (1939)
Q Consensus 403 G~--Ee~~g~S~~N~~EA~~V~~lV~~L~~~~~~~ 435 (1939)
|. .+.+..-+.|..||+.++.+..++.--|...
T Consensus 1123 g~gEt~p~p~fyQnlgeaey~vAly~YMr~Lgypa 1157 (1320)
T KOG1806|consen 1123 GSGETEPSPGFYQNLGEAEYAVALFQYMRLLGYPA 1157 (1320)
T ss_pred cccccCCCcccccCCchhhhHHHHHHHHHHhCCch
Confidence 33 3356667899999999999999998887655
No 19
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=99.53 E-value=4.8e-14 Score=187.98 Aligned_cols=61 Identities=30% Similarity=0.348 Sum_probs=48.3
Q ss_pred eEEEEeecccCCCCCEEEEeccCCCCCccccccCCCCCCCCCChhHh-hhhhHHHHhhhheeeeccccceEEEecc
Q 035724 954 ALVLTIVESKGLEFQVIHYTSQCCNSPFKHALFDSTSPGSFPSFNEA-KHNVLCSELKQLYVAITRTRQRLWIWEN 1028 (1939)
Q Consensus 954 ~lVmTihesKGLEF~~Vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~Elk~LYVA~TRAr~~L~I~d~ 1028 (1939)
..+||||.|||||||+|||.++..+ .+|..... ....+++|+|++||||||||++|+|.-.
T Consensus 554 V~LmTiH~AKGLEf~~Vfl~gl~eg--------------~~P~~~~~~~~~~leEERRL~YVAiTRAk~~L~ls~~ 615 (721)
T PRK11773 554 VQLMTLHSAKGLEFPLVFIVGMEEG--------------LFPSQMSLEEGGRLEEERRLAYVGITRAMQKLTLTYA 615 (721)
T ss_pred eEEEechhccCCcCCEEEEeCCccC--------------CCCCccccccchhhHHHHhHHHhhhhhhhheeEEEeh
Confidence 3499999999999999999999877 22221111 1235889999999999999999999863
No 20
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.53 E-value=6.2e-13 Score=164.58 Aligned_cols=311 Identities=17% Similarity=0.209 Sum_probs=222.8
Q ss_pred hhhcCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHh-hhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCH
Q 035724 1059 MQVASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKAT-GLKATADRCRSSNPKQANVNLREAAKIFEAIGKA 1137 (1939)
Q Consensus 1059 l~v~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~-~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~ 1137 (1939)
....+.|..|+..|+++...|..|.|+..|..|.|.--....+.+ +...++..+.. ...........|++|+.-|++
T Consensus 906 v~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~--esgd~AAcYhlaR~YEn~g~v 983 (1416)
T KOG3617|consen 906 VRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAE--ESGDKAACYHLARMYENDGDV 983 (1416)
T ss_pred HHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHH--hcccHHHHHHHHHHhhhhHHH
Confidence 344788899999999999999999999999999984332222222 11122221111 111345678899999999999
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHh------------cChHHHHHHHHHHHHcC-CHHHHHHHHHHccCHHHHHHHHHhcCC
Q 035724 1138 DSAAKCFYNLGEYERAGRIYLER------------REEPELEKAGECFFLAG-CYKLAADVYAKGKFFSECLAVCSKGKL 1204 (1939)
Q Consensus 1138 ~kAaecy~kag~~~~A~eLY~e~------------~~e~~~~qaAe~fE~~G-~y~eAAelY~kagd~dkAI~my~k~k~ 1204 (1939)
.+|+..|.++.-|..|++++++. .+..++..+|.|||+.| .++.|..+|.|+|.+.||++|....++
T Consensus 984 ~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQ 1063 (1416)
T KOG3617|consen 984 VKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQ 1063 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcc
Confidence 99999999999999999998875 12234788999999998 999999999999999999999999999
Q ss_pred hHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHHhhc
Q 035724 1205 FEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRSVDLMRKFLKSLS 1284 (1939)
Q Consensus 1205 fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s~eeA~~~L~k~~ 1284 (1939)
|. |+++|.+ | +.. ...++.+..|+..|....+++.|++++-+....+.|...++.+|
T Consensus 1064 f~-aL~lIa~--D-Ld~-------------------~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~n 1120 (1416)
T KOG3617|consen 1064 FS-ALDLIAK--D-LDA-------------------GSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRN 1120 (1416)
T ss_pred cH-HHHHHHH--h-cCC-------------------CCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 87 7888773 1 111 11345667889999999999999999998888888888877655
Q ss_pred CH--HHHHHHHH--hcCCHHHH---------HHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHHh-------hhh-----
Q 035724 1285 CF--DDLLVLEE--ESGNFMDA---------ANIARLRGDIFLAVDLLQKAGCFKEACNVTLNHV-------ISN----- 1339 (1939)
Q Consensus 1285 ~l--dea~ell~--e~G~feEA---------a~Lak~~Gk~~eAi~my~kAG~~~eA~rva~~~~-------~~~----- 1339 (1939)
.- ++.++++- +.+.++++ ++++.+.|.+-.|.+-|.+||+-..|+|.+++-- ++|
T Consensus 1121 v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLKSGdt~KI~FFAn~sRqk 1200 (1416)
T KOG3617|consen 1121 VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALLKSGDTQKIRFFANTSRQK 1200 (1416)
T ss_pred CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHHhcCCcceEEEEeeccccc
Confidence 43 56666542 23666666 4566788999999999999999999999988761 111
Q ss_pred -ccccCC----CCCCCCc-c-hhhHHHHHHHHHhHhhhhhHHHHHHH-hhhhhccccCCCCHHHH
Q 035724 1340 -SLWSPG----SKGWPLK-Q-FTKKKELLEKAKSLAKNESNQFYEFV-CTEADILSNDQSDLSII 1396 (1939)
Q Consensus 1340 -~l~~~~----~~~~~~~-~-~~~ae~ll~~A~~~~~~~s~~~~~~~-~~e~~~~~~~~~~~~~~ 1396 (1939)
+++--| ...|... + ...-++++.|.+.| |-+-+ ||+-. -+|++=+.|=++++--+
T Consensus 1201 EiYImAANyLQtlDWq~~pq~mK~I~tFYTKgqaf-d~Lan-FY~~cAqiEiee~q~ydKa~gAl 1263 (1416)
T KOG3617|consen 1201 EIYIMAANYLQTLDWQDNPQTMKDIETFYTKGQAF-DHLAN-FYKSCAQIEIEELQTYDKAMGAL 1263 (1416)
T ss_pred eeeeehhhhhhhcccccChHHHhhhHhhhhcchhH-HHHHH-HHHHHHHhhHHHHhhhhHHhHHH
Confidence 121111 1123222 1 33457788888875 34443 55543 77888788755554444
No 21
>PF13087 AAA_12: AAA domain; PDB: 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A 2XZL_A.
Probab=99.52 E-value=1.3e-14 Score=163.73 Aligned_cols=110 Identities=35% Similarity=0.477 Sum_probs=72.0
Q ss_pred ccCCHHHHHHhcC-CccccccccccCChhhhccCcccccCCCCCCCCcccccccccccCCCCCCCCeEEEEcCCCccc-c
Q 035724 330 LGRSLFERLSNLG-QAKHLLSIQYRMHPSISSFPNSYFYDNKIFDSPNVKEKNYEKRFLPGRMYGPYSFINVLDGREE-S 407 (1939)
Q Consensus 330 l~~SLFeRL~~~~-~~~~~L~~QYRmhp~I~~f~S~~FY~gkL~~~~~v~~~~~~~~~l~~p~~~p~~Fidv~~G~Ee-~ 407 (1939)
++.|||+|+...+ .+.++|++||||||+|++|+|..||+|+|.+++++............+...|+.|+|+ .|.+. .
T Consensus 1 ~~~Slferl~~~~~~~~~~L~~qyR~~~~I~~~~s~~fY~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~v-~~~~~~~ 79 (200)
T PF13087_consen 1 LDRSLFERLIKNGSVPVVMLTEQYRMHPEIADFSSRLFYNGKLVSGPSVKNRPAPLLKLLPSPQNPIVFIDV-SGSESSS 79 (200)
T ss_dssp TTS-HHHHHHHCT----EE--EE-SS-HHHHHHHHHHHSTT--EESS-TCCCS-T-----SSTTSSEEEEE-----EEEE
T ss_pred CCccHHHHHHHcCCCCceecccccCCCHHHHHHHHHHHhchhcccCcccccccccccccccCCCCceEEEec-ccccccc
Confidence 4789999999998 9999999999999999999999999999999997766554421112222568999999 55544 2
Q ss_pred C--CCCcCCHHHHHHHHHHHHHHHHcCCCC--CcceE
Q 035724 408 I--AHSYRNMVEVFVVMKILLNLYKVHNVS--NLCSS 440 (1939)
Q Consensus 408 ~--g~S~~N~~EA~~V~~lV~~L~~~~~~~--~~~I~ 440 (1939)
. ++|+.|..||.+|+++++.|+...... ...|+
T Consensus 80 ~~~~~s~~N~~Ea~~i~~~~~~l~~~~~~~~~~~~I~ 116 (200)
T PF13087_consen 80 ESSQTSYYNPDEAEFIVELVRDLLDNGPDSNKPSSIG 116 (200)
T ss_dssp TTC-SCEEEHHHHHHHHHHHHHHHHTT--G---GGEE
T ss_pred cccccceechhhHHHHHHHHhhhhhccccccccCCce
Confidence 2 289999999999999999999997765 34444
No 22
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=99.48 E-value=1.4e-13 Score=182.30 Aligned_cols=191 Identities=19% Similarity=0.247 Sum_probs=123.7
Q ss_pred EEEecccccHHHHHHHHHhccChhHHHHhhcCCCCcccccccCCCcCCCccccccCCCCCCCCCHHHHHHHHHHHhcccC
Q 035724 147 AIFLTNVTSNTRIWNSLHMSGNLKIIKELLCTDSVVKEDCELCPVQSDGIWNDIFGPSLSSTLNDSQAQAVLSCLRRTHC 226 (1939)
Q Consensus 147 vv~l~N~~t~~R~~~AL~~~~~~~ii~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LN~sQ~~AV~~~L~~~~~ 226 (1939)
++..-+.++..++|.++..++.. +.++....+.... +.. ..... .++......||+.|++|+..++.
T Consensus 271 l~~~~~~i~~~~~~~~E~~ia~~--l~~~~~~~~~~~~-----~~~-~~~i~-~~~~~~~~~l~~~Q~~Ai~~~~~---- 337 (720)
T TIGR01448 271 LAAEDGRIYLPSLFRAEKQIASH--IRRLLATSPAIGA-----IND-QEHIW-EVEKKLRKGLSEEQKQALDTAIQ---- 337 (720)
T ss_pred EEEECCEEeeHHHHHHHHHHHHH--HHHHhcCCCCCCc-----hhH-HHHHH-HHHHhcCCCCCHHHHHHHHHHHh----
Confidence 34445678999999999987654 4444432211100 000 00000 11112346899999999999976
Q ss_pred CCCCcEEEEeCCCCCchhHHHHHHHHHHhcC---CcEEEEcccch-------------hhHHhh--------------hc
Q 035724 227 DHKATVELIWGPPGTGKTKTVSMLLDFCFTK---ASLIFCTASSS-------------YKLHRV--------------AM 276 (1939)
Q Consensus 227 ~~~~~v~LI~GPPGTGKTtti~~li~~~l~~---a~vI~~T~sss-------------~~l~~l--------------~~ 276 (1939)
+++.+|+|+|||||||++..++..+... ..|++|++++. .+++++ .+
T Consensus 338 ---~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~ 414 (720)
T TIGR01448 338 ---HKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDP 414 (720)
T ss_pred ---CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhcc
Confidence 5799999999999999999998765443 45666533321 111221 12
Q ss_pred cCCcEEEEeCCcccchHHhhccc-cCCCcceEEEEeccccCCcceeccccccccccCCHHHHHHhcC-CccccccccccC
Q 035724 277 EQLKFLVIDEAAQLKEVESAIPL-KLPGIQHAILIGDECQLPAMVESSVSGEACLGRSLFERLSNLG-QAKHLLSIQYRM 354 (1939)
Q Consensus 277 ~~fdvVIIDEASQ~~E~e~lipL-~~~~~~rlVLiGD~~QLpPvV~s~~~~~~gl~~SLFeRL~~~~-~~~~~L~~QYRm 354 (1939)
...|+||||||||+........+ ..+...++||+||+.||||+..+ ..|..+...+ .+.+.|++.||.
T Consensus 415 ~~~~llIvDEaSMvd~~~~~~Ll~~~~~~~rlilvGD~~QLpsV~~G----------~v~~dl~~~~~~~~~~L~~i~RQ 484 (720)
T TIGR01448 415 IDCDLLIVDESSMMDTWLALSLLAALPDHARLLLVGDTDQLPSVGPG----------QVLKDLILSQAIPVTRLTKVYRQ 484 (720)
T ss_pred ccCCEEEEeccccCCHHHHHHHHHhCCCCCEEEEECccccccCCCCC----------chHHHHHhcCCCCEEEeCeeecc
Confidence 45799999999999987433222 23456899999999999998632 3455566554 678899999998
Q ss_pred Ch--hhhccCc
Q 035724 355 HP--SISSFPN 363 (1939)
Q Consensus 355 hp--~I~~f~S 363 (1939)
.. .|.....
T Consensus 485 ~~~s~i~~~a~ 495 (720)
T TIGR01448 485 AAGSPIITLAH 495 (720)
T ss_pred CCCcHHHHHHH
Confidence 53 3544443
No 23
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=99.32 E-value=4.1e-12 Score=170.51 Aligned_cols=138 Identities=18% Similarity=0.182 Sum_probs=99.0
Q ss_pred CCCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhc-CCcEEEEcccch-------------hhH
Q 035724 206 SSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFT-KASLIFCTASSS-------------YKL 271 (1939)
Q Consensus 206 ~~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~-~a~vI~~T~sss-------------~~l 271 (1939)
...||+.|++||..++++ +.+.+|+|+|||||||++..++..+-. ...|+++.+++. .++
T Consensus 344 g~~Ls~eQr~Av~~il~s------~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~a~TI 417 (988)
T PRK13889 344 GLVLSGEQADALAHVTDG------RDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTI 417 (988)
T ss_pred CCCCCHHHHHHHHHHhcC------CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcchhhH
Confidence 457999999999999874 458899999999999998877655443 456776643321 222
Q ss_pred Hhh---------hccCCcEEEEeCCcccchHHhhccc--cCCCcceEEEEeccccCCcceeccccccccccCCHHHHHHh
Q 035724 272 HRV---------AMEQLKFLVIDEAAQLKEVESAIPL--KLPGIQHAILIGDECQLPAMVESSVSGEACLGRSLFERLSN 340 (1939)
Q Consensus 272 ~~l---------~~~~fdvVIIDEASQ~~E~e~lipL--~~~~~~rlVLiGD~~QLpPvV~s~~~~~~gl~~SLFeRL~~ 340 (1939)
+.+ ...+.++||||||||+......-.+ ......++|||||+.||||+-.+ ..|.-|..
T Consensus 418 ~sll~~~~~~~~~l~~~~vlIVDEASMv~~~~m~~LL~~a~~~garvVLVGD~~QLpsV~aG----------~~f~~L~~ 487 (988)
T PRK13889 418 ASLEHGWGQGRDLLTSRDVLVIDEAGMVGTRQLERVLSHAADAGAKVVLVGDPQQLQAIEAG----------AAFRSIHE 487 (988)
T ss_pred HHHHhhhcccccccccCcEEEEECcccCCHHHHHHHHHhhhhCCCEEEEECCHHHcCCCCCC----------chHHHHHH
Confidence 222 1345689999999999887544333 33456899999999999998532 45655543
Q ss_pred cCCccccccccccCChhhhc
Q 035724 341 LGQAKHLLSIQYRMHPSISS 360 (1939)
Q Consensus 341 ~~~~~~~L~~QYRmhp~I~~ 360 (1939)
..+.+.|++.+|.......
T Consensus 488 -~~~~a~LteI~RQ~~~~~r 506 (988)
T PRK13889 488 -RHGGAEIGEVRRQREDWQR 506 (988)
T ss_pred -hcCeEEeceeecCCCHHHH
Confidence 3567899999999765443
No 24
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=99.30 E-value=5.9e-12 Score=167.52 Aligned_cols=134 Identities=21% Similarity=0.217 Sum_probs=96.0
Q ss_pred CCCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhc-CCcEEEEcccchh-------------hH
Q 035724 206 SSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFT-KASLIFCTASSSY-------------KL 271 (1939)
Q Consensus 206 ~~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~-~a~vI~~T~sss~-------------~l 271 (1939)
...||+.|++||..++.+ +++.+|+|||||||||++..++..+.. ..+|+++.+++.. ++
T Consensus 350 ~~~Ls~~Q~~Av~~i~~s------~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti 423 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTGS------GDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTL 423 (744)
T ss_pred cCCCCHHHHHHHHHHhcC------CCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeH
Confidence 367999999999999863 469999999999999999998755543 4567776443321 11
Q ss_pred Hhh---------hccCCcEEEEeCCcccchHHhhccc--cCCCcceEEEEeccccCCcceeccccccccccCCHHHHHHh
Q 035724 272 HRV---------AMEQLKFLVIDEAAQLKEVESAIPL--KLPGIQHAILIGDECQLPAMVESSVSGEACLGRSLFERLSN 340 (1939)
Q Consensus 272 ~~l---------~~~~fdvVIIDEASQ~~E~e~lipL--~~~~~~rlVLiGD~~QLpPvV~s~~~~~~gl~~SLFeRL~~ 340 (1939)
+.+ ...+.|+||||||||+......-.+ ......++||+||+.||||+..+ ..|.-|..
T Consensus 424 ~~~~~~~~~~~~~~~~~~llIvDEasMv~~~~~~~Ll~~~~~~~~kliLVGD~~QLpsVgaG----------~~f~~l~~ 493 (744)
T TIGR02768 424 ASLEYAWANGRDLLSDKDVLVIDEAGMVGSRQMARVLKEAEEAGAKVVLVGDPEQLQPIEAG----------AAFRAIAE 493 (744)
T ss_pred HHHHhhhccCcccCCCCcEEEEECcccCCHHHHHHHHHHHHhcCCEEEEECChHHccccccC----------cHHHHHHH
Confidence 111 1246799999999999877433222 23346799999999999999743 35555554
Q ss_pred cCCccccccccccCCh
Q 035724 341 LGQAKHLLSIQYRMHP 356 (1939)
Q Consensus 341 ~~~~~~~L~~QYRmhp 356 (1939)
..+.+.|+..||...
T Consensus 494 -~~~~~~Lt~I~RQ~~ 508 (744)
T TIGR02768 494 -RIGYAELETIRRQRE 508 (744)
T ss_pred -hhCeEEeeeEEecCC
Confidence 356778898888653
No 25
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=4e-10 Score=140.36 Aligned_cols=337 Identities=16% Similarity=0.129 Sum_probs=216.7
Q ss_pred chhHHHHHhhccceehc-----------ccch--HHHHHhhhcCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHH
Q 035724 1033 SKPMFDYWKKKSLVQVR-----------QLDD--SLAQAMQVASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGR 1099 (1939)
Q Consensus 1033 ~~Pm~~yw~~~~Lvqv~-----------~lde--~l~~~l~v~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l 1099 (1939)
++|+++|....+..++- +... .-..+++...+..-|-++|....+..+.|.|.-|.=.-++.+.++-
T Consensus 712 ~~pLrdFvgle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRA 791 (1416)
T KOG3617|consen 712 AKPLRDFVGLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARA 791 (1416)
T ss_pred hhhHHHhcCccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHH
Confidence 46777776665544331 1111 1123444456778999999999999999999999876665444432
Q ss_pred -HHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcC---hHHHHHHHHHHHH
Q 035724 1100 -SKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERRE---EPELEKAGECFFL 1175 (1939)
Q Consensus 1100 -~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~---e~~~~qaAe~fE~ 1175 (1939)
.+|.+.-+. .+.+..-.....+...+|..+|.++.+|+.--++|...|+|.+|.++.+..-. .+-+-+.|.+++.
T Consensus 792 lR~a~q~~~e-~eakvAvLAieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 792 LRRAQQNGEE-DEAKVAVLAIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred HHHHHhCCcc-hhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 222211000 00000011223456899999999999999999999999999999999765210 1226678899999
Q ss_pred cCCHHHHHHHHHHccC-----------HHHHHHHHHhcCChHHHHHHHHhhhhccccc------------ccccccchhh
Q 035724 1176 AGCYKLAADVYAKGKF-----------FSECLAVCSKGKLFEIGLQYMNHWKQHADTD------------VEHAGTDVGL 1232 (1939)
Q Consensus 1176 ~G~y~eAAelY~kagd-----------~dkAI~my~k~k~fd~airLv~q~~d~l~~~------------~~~~~~~~~l 1232 (1939)
.++-+.|.++|+|++. +-++|+.|.+...=+...+.=.+|-+..... .-....-.++
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~ 950 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCI 950 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEee
Confidence 9999999999999865 3456666654332122222211222111000 0000000011
Q ss_pred hhhhhhHhHHHHHH--HH---HHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHHhhcCHHHHHHHHHhcCC--HHHHHHH
Q 035724 1233 LVRSMEINKIEQEF--LE---KCAIHYYGLQDKKSMMKFVKSFRSVDLMRKFLKSLSCFDDLLVLEEESGN--FMDAANI 1305 (1939)
Q Consensus 1233 ~~~~~~~~~ie~~~--le---~aa~hy~kagD~k~A~~~~~~~~s~eeA~~~L~k~~~ldea~ell~e~G~--feEAa~L 1305 (1939)
..+...++.++++- +- ..+.+|...||..+|+.|+-..+....|.+.++.++.-+++..+...+|. .-.|++.
T Consensus 951 qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArY 1030 (1416)
T KOG3617|consen 951 QGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARY 1030 (1416)
T ss_pred ccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHH
Confidence 11111122222221 11 12778999999999999999999999999999998888999998877664 4456788
Q ss_pred HHHcC-CHHHHHHHHHHhCCHHHHHHHHHHH---h----hhh---------ccccCCCCCCCCcchhhHHHHHHHHHhHh
Q 035724 1306 ARLRG-DIFLAVDLLQKAGCFKEACNVTLNH---V----ISN---------SLWSPGSKGWPLKQFTKKKELLEKAKSLA 1368 (1939)
Q Consensus 1306 ak~~G-k~~eAi~my~kAG~~~eA~rva~~~---~----~~~---------~l~~~~~~~~~~~~~~~ae~ll~~A~~~~ 1368 (1939)
++..| .+..|+.+|++||.+-+|+.+|+.- . ++. .|=.-+.+..+-.||+||.+||..|+.|.
T Consensus 1031 yEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~ 1110 (1416)
T KOG3617|consen 1031 YEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFS 1110 (1416)
T ss_pred HHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 88876 9999999999999999999998755 1 222 22222334445678999999999999986
Q ss_pred hh
Q 035724 1369 KN 1370 (1939)
Q Consensus 1369 ~~ 1370 (1939)
..
T Consensus 1111 ~A 1112 (1416)
T KOG3617|consen 1111 GA 1112 (1416)
T ss_pred HH
Confidence 54
No 26
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=99.24 E-value=1.9e-11 Score=168.39 Aligned_cols=143 Identities=17% Similarity=0.175 Sum_probs=104.6
Q ss_pred CCCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHh-----cCCcEEEEcccchh-----------
Q 035724 206 SSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCF-----TKASLIFCTASSSY----------- 269 (1939)
Q Consensus 206 ~~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l-----~~a~vI~~T~sss~----------- 269 (1939)
...||+.|++||..+|.+. .++.+|+|+|||||||++..++..+. ....|+++.+++.+
T Consensus 833 ~~~Lt~~Qr~Av~~iLts~-----dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~e~Gi~A 907 (1623)
T PRK14712 833 MEKLTSGQRAATRMILETS-----DRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMRSAGVDA 907 (1623)
T ss_pred hcccCHHHHHHHHHHHhCC-----CceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHHHHhCchH
Confidence 3579999999999999843 57999999999999999988775432 13456665433321
Q ss_pred -hHHhhh-------------ccCCcEEEEeCCcccchHHhh--ccccCCCcceEEEEeccccCCcceeccccccccccCC
Q 035724 270 -KLHRVA-------------MEQLKFLVIDEAAQLKEVESA--IPLKLPGIQHAILIGDECQLPAMVESSVSGEACLGRS 333 (1939)
Q Consensus 270 -~l~~l~-------------~~~fdvVIIDEASQ~~E~e~l--ipL~~~~~~rlVLiGD~~QLpPvV~s~~~~~~gl~~S 333 (1939)
+++++- ..+.+++|||||||+...... +-+......++||+||+.||||+- ..+
T Consensus 908 ~TIasfL~~~~~~~~~~~~~~~~~~llIVDEASMV~~~~m~~ll~~~~~~garvVLVGD~~QL~sV~----------aG~ 977 (1623)
T PRK14712 908 QTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVASGDTDQLQAIA----------PGQ 977 (1623)
T ss_pred hhHHHHhccccchhhcccCCCCCCcEEEEEccccccHHHHHHHHHhhhhCCCEEEEEcchhhcCCCC----------CCH
Confidence 111110 134689999999999886543 222333457999999999999997 345
Q ss_pred HHHHHHhc-CCccccccccccCChhhhccCc
Q 035724 334 LFERLSNL-GQAKHLLSIQYRMHPSISSFPN 363 (1939)
Q Consensus 334 LFeRL~~~-~~~~~~L~~QYRmhp~I~~f~S 363 (1939)
.|+-|+.. +.+...|++.+|..|++-.-..
T Consensus 978 ~F~~lq~~~~~~ta~L~eI~RQ~~elr~AV~ 1008 (1623)
T PRK14712 978 PFRLQQTRSAADVVIMKEIVRQTPELREAVY 1008 (1623)
T ss_pred HHHHHHHcCCCCeEEeCeeecCCHHHHHHHH
Confidence 78888876 6789999999999887665554
No 27
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=99.22 E-value=2.5e-11 Score=163.61 Aligned_cols=134 Identities=19% Similarity=0.227 Sum_probs=97.2
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHh-cCCcEEEEcccchh-------------hHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCF-TKASLIFCTASSSY-------------KLH 272 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l-~~a~vI~~T~sss~-------------~l~ 272 (1939)
..||+.|++||..+... .++.+|+|+|||||||++..+.+..- ...+|+.+.+++.. +++
T Consensus 380 ~~Ls~eQ~~Av~~i~~~------~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L~e~~Gi~a~TIa 453 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGP------ARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLEKEAGIQSRTLS 453 (1102)
T ss_pred CCCCHHHHHHHHHHhcc------CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHHHHhhCCCeeeHH
Confidence 57999999999987642 57999999999999999999876543 34567776433211 122
Q ss_pred hh---------hccCCcEEEEeCCcccchHHhhccc--cCCCcceEEEEeccccCCcceeccccccccccCCHHHHHHhc
Q 035724 273 RV---------AMEQLKFLVIDEAAQLKEVESAIPL--KLPGIQHAILIGDECQLPAMVESSVSGEACLGRSLFERLSNL 341 (1939)
Q Consensus 273 ~l---------~~~~fdvVIIDEASQ~~E~e~lipL--~~~~~~rlVLiGD~~QLpPvV~s~~~~~~gl~~SLFeRL~~~ 341 (1939)
.+ .....++||||||||+......-.+ ......++|||||+.||||+..+ ..|..|..
T Consensus 454 s~ll~~~~~~~~l~~~~vlVIDEAsMv~~~~m~~Ll~~~~~~garvVLVGD~~QL~~V~aG----------~~f~~l~~- 522 (1102)
T PRK13826 454 SWELRWNQGRDQLDNKTVFVLDEAGMVASRQMALFVEAVTRAGAKLVLVGDPEQLQPIEAG----------AAFRAIAD- 522 (1102)
T ss_pred HHHhhhccCccCCCCCcEEEEECcccCCHHHHHHHHHHHHhcCCEEEEECCHHHcCCCCCC----------cHHHHHHh-
Confidence 21 1123589999999999887554333 22346899999999999999733 35666654
Q ss_pred CCccccccccccCChh
Q 035724 342 GQAKHLLSIQYRMHPS 357 (1939)
Q Consensus 342 ~~~~~~L~~QYRmhp~ 357 (1939)
..+...|++.||....
T Consensus 523 ~i~~a~LteI~RQ~~~ 538 (1102)
T PRK13826 523 RIGYAELETIYRQREQ 538 (1102)
T ss_pred hcCEEEeeeeeecCCh
Confidence 4667899999998765
No 28
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=99.17 E-value=8.8e-11 Score=164.18 Aligned_cols=149 Identities=16% Similarity=0.161 Sum_probs=106.1
Q ss_pred CCCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHh-----cCCcEEEEcccc------------h
Q 035724 206 SSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCF-----TKASLIFCTASS------------S 268 (1939)
Q Consensus 206 ~~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l-----~~a~vI~~T~ss------------s 268 (1939)
...||+.|++||..++.+. .++.+|+|+|||||||++..++..+. ....|+++.+++ +
T Consensus 965 ~~~Lt~~Q~~Av~~il~s~-----dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~e~Gi~A 1039 (1747)
T PRK13709 965 MEGLTSGQRAATRMILEST-----DRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMRSAGVDA 1039 (1747)
T ss_pred cCCCCHHHHHHHHHHHhCC-----CcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHHHhcCcch
Confidence 4569999999999999843 47999999999999999998886542 234577664333 1
Q ss_pred hhHHhhh-------------ccCCcEEEEeCCcccchHHhhccc--cCCCcceEEEEeccccCCcceeccccccccccCC
Q 035724 269 YKLHRVA-------------MEQLKFLVIDEAAQLKEVESAIPL--KLPGIQHAILIGDECQLPAMVESSVSGEACLGRS 333 (1939)
Q Consensus 269 ~~l~~l~-------------~~~fdvVIIDEASQ~~E~e~lipL--~~~~~~rlVLiGD~~QLpPvV~s~~~~~~gl~~S 333 (1939)
.+++++- ....+++|||||||+....+.-.+ ......++|||||+.||||+-. ..
T Consensus 1040 ~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaSMv~~~~m~~Ll~~~~~~garvVLVGD~~QL~sV~a----------G~ 1109 (1747)
T PRK13709 1040 QTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVSSGDTDQLQAIAP----------GQ 1109 (1747)
T ss_pred hhHHHHhcccccccccccCCCCCCcEEEEEccccccHHHHHHHHHhhhcCCCEEEEecchHhcCCCCC----------Ch
Confidence 2222221 124589999999999877544333 2223579999999999999962 25
Q ss_pred HHHHHHhc-CCccccccccccCChhhhccCcccccCCC
Q 035724 334 LFERLSNL-GQAKHLLSIQYRMHPSISSFPNSYFYDNK 370 (1939)
Q Consensus 334 LFeRL~~~-~~~~~~L~~QYRmhp~I~~f~S~~FY~gk 370 (1939)
.|.-|+.. +.+...|++.+|..+. ..=....+.+|.
T Consensus 1110 ~f~~l~~~~~i~~~~L~eI~RQ~~~-lr~Av~~~~~g~ 1146 (1747)
T PRK13709 1110 PFRLMQTRSAADVAIMKEIVRQTPE-LREAVYSLINRD 1146 (1747)
T ss_pred HHHHHHHhCCCCeEEeCeEEcCcHH-HHHHHHHHHccC
Confidence 78888874 6788999999999973 333333455544
No 29
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=99.03 E-value=3.3e-10 Score=158.54 Aligned_cols=118 Identities=25% Similarity=0.358 Sum_probs=71.6
Q ss_pred CceEEEEeecccCCCCCEEEEeccCCCCCccc---------------cccCCCCCCCCCChh------HhhhhhHHHHhh
Q 035724 952 KQALVLTIVESKGLEFQVIHYTSQCCNSPFKH---------------ALFDSTSPGSFPSFN------EAKHNVLCSELK 1010 (1939)
Q Consensus 952 ~~~lVmTihesKGLEF~~Vil~~~~~~~~~~~---------------~~~~~~~~~~~~~~~------~~~~~~l~~Elk 1010 (1939)
+...|||||.|||||||+|||.++....+..+ .++++..+...|+.. ..+...+.+|+|
T Consensus 781 daV~IMTIHkSKGLEFPvVfl~~l~~~fn~~d~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Ee~R 860 (1232)
T TIGR02785 781 NAVRLMTIHKSKGLEFPVVFVLGMGKQFNKQDLNSSYLLNRQLGLGITYIDPQERLSYPSLPKVAIKQKMKRELLSEEMR 860 (1232)
T ss_pred CeEEEEeeecccCCCCCEEEEeCCCCCCCccccccceEeccccCCCCceecchhccCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 45679999999999999999999875543322 122222232334332 234557789999
Q ss_pred hheeeeccccceEEEeccccccchhHHHHHhhccceehcccchHHHHHhhhcCCHHHHHHHHH
Q 035724 1011 QLYVAITRTRQRLWIWENMEEFSKPMFDYWKKKSLVQVRQLDDSLAQAMQVASSPEEWKSRGI 1073 (1939)
Q Consensus 1011 ~LYVA~TRAr~~L~I~d~~~~~~~Pm~~yw~~~~Lvqv~~lde~l~~~l~v~StpeeW~~lG~ 1073 (1939)
+||||+||||++|+|+.......+. .+-|....-..-..+.. ....-..+.-+|...|.
T Consensus 861 lLYVAlTRAke~Lil~g~~~~~~~~-~~~~~~~~~~~~~~l~~---~~~~~a~syldwi~~al 919 (1232)
T TIGR02785 861 VLYVALTRAKEKLILVGSVKDEKKE-SKKWLAALAVSGWVLPA---NDRLQATNYLDWIGPAL 919 (1232)
T ss_pred HHHhhhhhhhheEEEEecHHHHHHH-HHHHHHhhccccCcCCH---HHHHhCCCHHHHHHHHH
Confidence 9999999999999999876432222 34454321110000111 11222568889954443
No 30
>PF13361 UvrD_C: UvrD-like helicase C-terminal domain; PDB: 1UAA_B 3U4Q_A 3U44_A 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A ....
Probab=99.03 E-value=1.1e-10 Score=141.49 Aligned_cols=62 Identities=32% Similarity=0.560 Sum_probs=49.8
Q ss_pred CceEEEEeecccCCCCCEEEEeccCCCCCccccccCCCCCCCCCChhH-hhhhhHHHHhhhheeeeccccceEEEec
Q 035724 952 KQALVLTIVESKGLEFQVIHYTSQCCNSPFKHALFDSTSPGSFPSFNE-AKHNVLCSELKQLYVAITRTRQRLWIWE 1027 (1939)
Q Consensus 952 ~~~lVmTihesKGLEF~~Vil~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~Elk~LYVA~TRAr~~L~I~d 1027 (1939)
+...|||||.|||||||.|+|.++..+ .+|.... .....+.+|+|++|||+||||++|+|+-
T Consensus 286 ~~V~i~TiH~sKGLEf~~V~v~~~~~~--------------~~p~~~~~~~~~~~~Ee~rl~YVA~TRAk~~L~l~~ 348 (351)
T PF13361_consen 286 DGVQIMTIHKSKGLEFDIVFVPGLNEG--------------TFPSYRSIEDRQELEEERRLFYVAMTRAKERLYLSY 348 (351)
T ss_dssp GSEEEEECGGGTT--EEEEEEETTBTB--------------TTTCHHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred cCcEEeeheeccccCCCeEEEecccCC--------------cChHHHHHhhHhhhHHHHhHheEecchhhceEEEEE
Confidence 466799999999999999999998776 4455433 3556788999999999999999999974
No 31
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=99.01 E-value=5.1e-10 Score=138.45 Aligned_cols=114 Identities=25% Similarity=0.371 Sum_probs=78.5
Q ss_pred CCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccch---------hhHHhh----
Q 035724 208 TLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASSS---------YKLHRV---- 274 (1939)
Q Consensus 208 ~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~sss---------~~l~~l---- 274 (1939)
.||++|++++..++..... ..+....|.||+|||||+++.+|...+......+++|++++ .++|+.
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~-~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~ 79 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIEN-EEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFGIP 79 (364)
T ss_pred CCCHHHHHHHHHHHHHHHc-cCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcchHHhcCcc
Confidence 4899999999998775532 34566799999999999999999877765444444332221 112221
Q ss_pred -------------------hccCCcEEEEeCCcccchHHhh-c--------c----ccCCCcceEEEEeccccCCcceec
Q 035724 275 -------------------AMEQLKFLVIDEAAQLKEVESA-I--------P----LKLPGIQHAILIGDECQLPAMVES 322 (1939)
Q Consensus 275 -------------------~~~~fdvVIIDEASQ~~E~e~l-i--------p----L~~~~~~rlVLiGD~~QLpPvV~s 322 (1939)
.....+++||||+||+...... + . -...|+..+||+||..||||++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~~~lIiDEism~~~~~l~~i~~~lr~i~~~~~~~~pFGG~~vil~GDf~QlpPV~~~ 159 (364)
T PF05970_consen 80 INNNEKSQCKISKNSRLRERLRKADVLIIDEISMVSADMLDAIDRRLRDIRKSKDSDKPFGGKQVILFGDFLQLPPVVPR 159 (364)
T ss_pred ccccccccccccccchhhhhhhhheeeecccccchhHHHHHHHHHhhhhhhcccchhhhcCcceEEeehhhhhcCCCccc
Confidence 1124589999999999765221 1 0 112467899999999999999844
No 32
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=98.98 E-value=1.6e-09 Score=155.77 Aligned_cols=139 Identities=17% Similarity=0.201 Sum_probs=97.3
Q ss_pred CCCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHH---Hh--cCCcEEEEcccchh-----------
Q 035724 206 SSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDF---CF--TKASLIFCTASSSY----------- 269 (1939)
Q Consensus 206 ~~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~---~l--~~a~vI~~T~sss~----------- 269 (1939)
...||+.|++|+..++.+. ..+.+|+|+|||||||++..+++. ++ ....|+++.+++.+
T Consensus 1017 ~~~Lt~~Q~~Ai~~il~~~-----~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~~L~~~g~~a 1091 (1960)
T TIGR02760 1017 LERLTHGQKQAIHLIISTK-----DRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGELKSAGVQA 1091 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCC-----CcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHhcCCch
Confidence 4579999999999999743 579999999999999999654422 22 24467766333211
Q ss_pred -hHHhhh-----------ccCCcEEEEeCCcccchHHhhcc--ccCCCcceEEEEeccccCCcceeccccccccccCCHH
Q 035724 270 -KLHRVA-----------MEQLKFLVIDEAAQLKEVESAIP--LKLPGIQHAILIGDECQLPAMVESSVSGEACLGRSLF 335 (1939)
Q Consensus 270 -~l~~l~-----------~~~fdvVIIDEASQ~~E~e~lip--L~~~~~~rlVLiGD~~QLpPvV~s~~~~~~gl~~SLF 335 (1939)
+++.+- ..+.+++|||||||+......-. +...+..++|||||+.||||+-.+ ..|
T Consensus 1092 ~Ti~s~l~~~~~~~~~~~~~~~~v~ivDEasMv~~~~~~~l~~~~~~~~ak~vlvGD~~QL~sV~aG----------~~f 1161 (1960)
T TIGR02760 1092 QTLDSFLTDISLYRNSGGDFRNTLFILDESSMVSNFQLTHATELVQKSGSRAVSLGDIAQLQSLAAG----------KPF 1161 (1960)
T ss_pred HhHHHHhcCcccccccCCCCcccEEEEEccccccHHHHHHHHHhccCCCCEEEEeCChhhcCCCCCC----------cCH
Confidence 122211 23458999999999998754433 233456899999999999997522 356
Q ss_pred HHHHhcC-CccccccccccCC--hhhh
Q 035724 336 ERLSNLG-QAKHLLSIQYRMH--PSIS 359 (1939)
Q Consensus 336 eRL~~~~-~~~~~L~~QYRmh--p~I~ 359 (1939)
+-++..+ .+.+.|+..+|.. |.+-
T Consensus 1162 ~~~~~~~~~~~~~L~~I~RQ~~~~~l~ 1188 (1960)
T TIGR02760 1162 ELAITFDIIDTAIMKEIVRQNNSAELK 1188 (1960)
T ss_pred HHHHhcCCCCeEEeeeEecCCCCHHHH
Confidence 6666554 7888999999994 5443
No 33
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=98.98 E-value=2e-10 Score=152.14 Aligned_cols=63 Identities=25% Similarity=0.303 Sum_probs=50.0
Q ss_pred CceEEEEeecccCCCCCEEEEeccCCCCCccccccCCCCCCCCCChhHhhhhhHHHHhhhheeeeccccceEEEecc
Q 035724 952 KQALVLTIVESKGLEFQVIHYTSQCCNSPFKHALFDSTSPGSFPSFNEAKHNVLCSELKQLYVAITRTRQRLWIWEN 1028 (1939)
Q Consensus 952 ~~~lVmTihesKGLEF~~Vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Elk~LYVA~TRAr~~L~I~d~ 1028 (1939)
+...+||||.|||||||+|||.++..+ .+|.-.......+++|+|++||||||||++|+|+-.
T Consensus 550 ~~V~L~TiH~sKGLEf~~Vfi~gl~eg--------------~~P~~~~~~~~~leEERRLfYVA~TRAk~~L~Ls~~ 612 (672)
T PRK10919 550 DQVQLMTLHASKGLEFPYVYLVGMEEG--------------LLPHQSSIDEDNIDEERRLAYVGITRAQKELTFTLC 612 (672)
T ss_pred CcEEEEeeecccCcCCCEEEEeCCcCC--------------CCCCcccCCcccHHHHHHHHHHhHhhhhhheEEeeh
Confidence 456799999999999999999998887 222211111245899999999999999999999754
No 34
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=98.95 E-value=2.2e-09 Score=154.55 Aligned_cols=138 Identities=22% Similarity=0.194 Sum_probs=100.3
Q ss_pred CCCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhc-CCcEEEEcccchhh-------------H
Q 035724 206 SSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFT-KASLIFCTASSSYK-------------L 271 (1939)
Q Consensus 206 ~~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~-~a~vI~~T~sss~~-------------l 271 (1939)
...||+.|++||..++.+. +.+.+|+|+|||||||++..++..+-. ..+|+++++++... +
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~-----~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgrAA~~L~e~~g~~A~Ti 501 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTST-----KRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSAQELRQKIPRLASTF 501 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCC-----CCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHhcchhhhH
Confidence 3579999999999999842 589999999999999999999865543 45677764433210 0
Q ss_pred Hhh--------------------hc-cCCcEEEEeCCcccchHHhhccc--cCCCcceEEEEeccccCCcceeccccccc
Q 035724 272 HRV--------------------AM-EQLKFLVIDEAAQLKEVESAIPL--KLPGIQHAILIGDECQLPAMVESSVSGEA 328 (1939)
Q Consensus 272 ~~l--------------------~~-~~fdvVIIDEASQ~~E~e~lipL--~~~~~~rlVLiGD~~QLpPvV~s~~~~~~ 328 (1939)
+.. .+ .+.++||||||||+...++.-.+ +.....++||+||+.||||+-.
T Consensus 502 ~~~l~~l~~~~~~~tv~~fl~~~~~l~~~~vlIVDEAsMl~~~~~~~Ll~~a~~~garvVlvGD~~QL~sV~a------- 574 (1960)
T TIGR02760 502 ITWVKNLFNDDQDHTVQGLLDKSSPFSNKDIFVVDEANKLSNNELLKLIDKAEQHNSKLILLNDSAQRQGMSA------- 574 (1960)
T ss_pred HHHHHhhcccccchhHHHhhcccCCCCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCEEEEEcChhhcCcccc-------
Confidence 000 01 35689999999999988665444 3335689999999999999863
Q ss_pred cccCCHHHHHHhcCCccccccccccCChhh
Q 035724 329 CLGRSLFERLSNLGQAKHLLSIQYRMHPSI 358 (1939)
Q Consensus 329 gl~~SLFeRL~~~~~~~~~L~~QYRmhp~I 358 (1939)
.+.|.-|...|.+.+.|+..-|....+
T Consensus 575 ---G~~f~~L~~~gv~t~~l~~i~rq~~~v 601 (1960)
T TIGR02760 575 ---GSAIDLLKEGGVTTYAWVDTKQQKASV 601 (1960)
T ss_pred ---chHHHHHHHCCCcEEEeecccccCcce
Confidence 346776777778888777665555444
No 35
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=98.91 E-value=5.9e-10 Score=149.26 Aligned_cols=63 Identities=30% Similarity=0.357 Sum_probs=49.2
Q ss_pred CceEEEEeecccCCCCCEEEEeccCCCCCccccccCCCCCCCCCChhH-hhhhhHHHHhhhheeeeccccceEEEecc
Q 035724 952 KQALVLTIVESKGLEFQVIHYTSQCCNSPFKHALFDSTSPGSFPSFNE-AKHNVLCSELKQLYVAITRTRQRLWIWEN 1028 (1939)
Q Consensus 952 ~~~lVmTihesKGLEF~~Vil~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~Elk~LYVA~TRAr~~L~I~d~ 1028 (1939)
+...+||||.|||||||+|||.++..+ .+|.... .....+++|+|++||||||||++|+|.-.
T Consensus 547 ~~V~lmTiH~sKGLEf~~Vfl~gl~eg--------------~~P~~~~~~~~~~leEERRL~YVAiTRAk~~L~ls~~ 610 (715)
T TIGR01075 547 DAVQLMTLHSAKGLEFPLVFLVGMEEG--------------MFPSQMSLDEGGRLEEERRLAYVGITRAMQKLTITYA 610 (715)
T ss_pred CcEEEEEeeeccCCcCCEEEEeCCcCC--------------CCCCccccCccccHHHHHhHHhhhhhhhhhheEEEec
Confidence 456799999999999999999998776 2222111 11235899999999999999999999753
No 36
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=98.90 E-value=7.1e-10 Score=148.78 Aligned_cols=63 Identities=27% Similarity=0.406 Sum_probs=49.3
Q ss_pred CceEEEEeecccCCCCCEEEEeccCCCCCccccccCCCCCCCCCChhH-hhhhhHHHHhhhheeeeccccceEEEecc
Q 035724 952 KQALVLTIVESKGLEFQVIHYTSQCCNSPFKHALFDSTSPGSFPSFNE-AKHNVLCSELKQLYVAITRTRQRLWIWEN 1028 (1939)
Q Consensus 952 ~~~lVmTihesKGLEF~~Vil~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~Elk~LYVA~TRAr~~L~I~d~ 1028 (1939)
+...+||||.|||||||+|||.++..+ .+|.... .....+++|+|++||||||||++|+|.-.
T Consensus 548 ~~V~LmTiH~sKGLEf~vVfv~gl~eg--------------~~P~~~~~~~~~~~eEERRL~YVAiTRAk~~L~ls~~ 611 (726)
T TIGR01073 548 GAVTLMTLHAAKGLEFPVVFLIGMEEG--------------VFPHSRSLMDEKELEEERRLAYVGITRAEEELYLTHA 611 (726)
T ss_pred CceEEEeeeeccCccCCEEEEeCCcCC--------------CCCcccccCCchhHHHHHhhHHhhhhhhhheEEEEeh
Confidence 467799999999999999999998776 1221110 01235889999999999999999999754
No 37
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.86 E-value=5.3e-08 Score=119.66 Aligned_cols=192 Identities=12% Similarity=0.110 Sum_probs=138.8
Q ss_pred cCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHH--HHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHH
Q 035724 1062 ASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEG--RSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADS 1139 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~--l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~k 1139 (1939)
+-+|.+- -+|..+..+|.|.+|.+.|.++|....+. ...--.....++-+.++++++.+...++-|+.-..++++..
T Consensus 630 ge~P~~i-LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePka 708 (1081)
T KOG1538|consen 630 GETPNDL-LLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKA 708 (1081)
T ss_pred CCCchHH-HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHH
Confidence 4556654 57899999999999999999999743321 11100111233445566777777777888888888888888
Q ss_pred HHHHHHHhCCHHHHHHHHHHh------------cC---hHHHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHHHHHhcCC
Q 035724 1140 AAKCFYNLGEYERAGRIYLER------------RE---EPELEKAGECFFLAGCYKLAADVYAKGKFFSECLAVCSKGKL 1204 (1939)
Q Consensus 1140 Aaecy~kag~~~~A~eLY~e~------------~~---e~~~~qaAe~fE~~G~y~eAAelY~kagd~dkAI~my~k~k~ 1204 (1939)
||+|.+.+|+..+|+++..+. .+ -.-++.+|.++.+...+-.|+++|.+.||....++|....+.
T Consensus 709 AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ksiVqlHve~~~ 788 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDLKSLVQLHVETQR 788 (1081)
T ss_pred HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccHHHHhhheeeccc
Confidence 888888888888888775542 11 122788999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHH
Q 035724 1205 FEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMK 1265 (1939)
Q Consensus 1205 fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~ 1265 (1939)
|++|+++++++|+..+.- ++ ..+.- ..+.+.++.|...|+++|..++|+.
T Consensus 789 W~eAFalAe~hPe~~~dV--------y~-pyaqw--LAE~DrFeEAqkAfhkAGr~~EA~~ 838 (1081)
T KOG1538|consen 789 WDEAFALAEKHPEFKDDV--------YM-PYAQW--LAENDRFEEAQKAFHKAGRQREAVQ 838 (1081)
T ss_pred chHhHhhhhhCccccccc--------cc-hHHHH--hhhhhhHHHHHHHHHHhcchHHHHH
Confidence 999999999999876522 11 11111 1244556666777777776666664
No 38
>PRK13909 putative recombination protein RecB; Provisional
Probab=98.84 E-value=2.4e-09 Score=146.46 Aligned_cols=81 Identities=25% Similarity=0.355 Sum_probs=53.4
Q ss_pred CCceEEEEeecccCCCCCEEEEeccCCCCCccc-ccc-CCC------------CCCCCCC-----hhHhhhhhHHHHhhh
Q 035724 951 GKQALVLTIVESKGLEFQVIHYTSQCCNSPFKH-ALF-DST------------SPGSFPS-----FNEAKHNVLCSELKQ 1011 (1939)
Q Consensus 951 ~~~~lVmTihesKGLEF~~Vil~~~~~~~~~~~-~~~-~~~------------~~~~~~~-----~~~~~~~~l~~Elk~ 1011 (1939)
.+...|||||+|||||||+|||.+......... .++ +.. .....+. ....+.....+++|+
T Consensus 605 ~daV~imTIHkSKGLEfpvVil~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~rl 684 (910)
T PRK13909 605 SKGVQIMTVHKSKGLEFEHVIVCDRLGKPNSDSSNLLFEYDGIELWQIYYRIKGRENFDKDYARALEKEKALKYEEEINV 684 (910)
T ss_pred cCceEEEEeeccCCCCCcEEEEccCccCCCCCCCcEEEccCCCCcceeccchhhhhcCcHHHHHHHHHHHHHHHHHHHhh
Confidence 356789999999999999999988654332111 111 110 0000111 111234466789999
Q ss_pred heeeeccccceEEEeccccc
Q 035724 1012 LYVAITRTRQRLWIWENMEE 1031 (1939)
Q Consensus 1012 LYVA~TRAr~~L~I~d~~~~ 1031 (1939)
||||+||||++|+|+...+.
T Consensus 685 LYVAlTRA~~~L~i~~~~~~ 704 (910)
T PRK13909 685 LYVAFTRAKNSLIVVKKDES 704 (910)
T ss_pred HheeccchhhceEEEecccc
Confidence 99999999999999997654
No 39
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=98.78 E-value=2.8e-09 Score=148.13 Aligned_cols=91 Identities=26% Similarity=0.362 Sum_probs=57.9
Q ss_pred ChhHHHHHhhhhCCceEEEEeecccCCCCCEEEEeccCCC-CCccc------------cccCCCCCCCCCCh----hHhh
Q 035724 939 DDCVRKEISNYVGKQALVLTIVESKGLEFQVIHYTSQCCN-SPFKH------------ALFDSTSPGSFPSF----NEAK 1001 (1939)
Q Consensus 939 ~~~~k~~i~~~l~~~~lVmTihesKGLEF~~Vil~~~~~~-~~~~~------------~~~~~~~~~~~~~~----~~~~ 1001 (1939)
++..+..+.+. .+...|||||+|||||||.|+|.+..+. ....+ .++........+.. ...+
T Consensus 730 ~~~~~~~l~~~-~~~VrImTIHkSKGLEfPiVflp~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~k~~~~ 808 (1139)
T COG1074 730 DEEQARRLESD-RDLVRIMTIHKSKGLEFPIVFLPFILSKRFNDSDVPLLVYYDGLRFELFDDLKSYPTPESQANKELAE 808 (1139)
T ss_pred CHHHHHhcCCC-cCeEEEEEEeccCCCCCCEEEecCCCCcccccccccceeecCCCceeeEeccccCCcHHHHHHHHHHH
Confidence 33444444443 3567899999999999999999884432 21111 11111110001111 2244
Q ss_pred hhhHHHHhhhheeeeccccceEEEecccc
Q 035724 1002 HNVLCSELKQLYVAITRTRQRLWIWENME 1030 (1939)
Q Consensus 1002 ~~~l~~Elk~LYVA~TRAr~~L~I~d~~~ 1030 (1939)
.+.+.+|+|+||||+|||+++|||+-...
T Consensus 809 ~e~~~E~~RLLYVAlTRAk~~L~l~g~~~ 837 (1139)
T COG1074 809 EEALAEELRLLYVALTRAKEQLILIGAPS 837 (1139)
T ss_pred HHHHHHHHHHHHHHHHHHHHheEEEeecc
Confidence 56788999999999999999999987553
No 40
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=98.73 E-value=5.5e-09 Score=139.21 Aligned_cols=62 Identities=26% Similarity=0.326 Sum_probs=49.9
Q ss_pred CceEEEEeecccCCCCCEEEEeccCCCCCccccccCCCCCCCCCChhHhhhhhHHHHhhhheeeeccccceEEEec
Q 035724 952 KQALVLTIVESKGLEFQVIHYTSQCCNSPFKHALFDSTSPGSFPSFNEAKHNVLCSELKQLYVAITRTRQRLWIWE 1027 (1939)
Q Consensus 952 ~~~lVmTihesKGLEF~~Vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Elk~LYVA~TRAr~~L~I~d 1027 (1939)
+...|||||.|||||||+||+.++..+ .+|.........+.+|++++||||||||++|++.-
T Consensus 550 d~V~l~TiH~sKGLEf~~Vfv~gl~eg--------------~~P~~~~~~~~~~~EErRlfYVA~TRAk~~L~Ls~ 611 (664)
T TIGR01074 550 DQVQLMTLHASKGLEFPYVFIVGMEEG--------------ILPHQSSIEEDNVEEERRLAYVGITRAQKELTFTL 611 (664)
T ss_pred CeEEEEeeecccCccCCeEEEeCCcCC--------------CCCCccccccchHHHHHHHHHHhhhhhhheeEEEe
Confidence 467899999999999999999999887 22321111224578999999999999999999974
No 41
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=98.73 E-value=8.4e-09 Score=144.58 Aligned_cols=79 Identities=24% Similarity=0.258 Sum_probs=50.9
Q ss_pred CceEEEEeecccCCCCCEEEEeccCCCC-Cccc--ccc--C----------CCCCC---CCCC-h----hHhhhhhHHHH
Q 035724 952 KQALVLTIVESKGLEFQVIHYTSQCCNS-PFKH--ALF--D----------STSPG---SFPS-F----NEAKHNVLCSE 1008 (1939)
Q Consensus 952 ~~~lVmTihesKGLEF~~Vil~~~~~~~-~~~~--~~~--~----------~~~~~---~~~~-~----~~~~~~~l~~E 1008 (1939)
+...|||||.|||||||+|||.+..... +..+ .++ . +.... ..+. . ...+.....++
T Consensus 774 daV~ImTIH~SKGLEfpvV~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~ 853 (1141)
T TIGR02784 774 DEVRVMTVHGAKGLEAPVVFLVDTGSAPFASQHAPKLLFTGGSGEASDGKAPLWRPPSAFDPALSAAARERLKERAEDEY 853 (1141)
T ss_pred CeEEEEeccccCCCCCCEEEEeCCCCCCCCccccccccccccCCCccccccccccccccCCCHHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999999885321 1111 111 0 00000 0011 1 11233466788
Q ss_pred hhhheeeeccccceEEEecccc
Q 035724 1009 LKQLYVAITRTRQRLWIWENME 1030 (1939)
Q Consensus 1009 lk~LYVA~TRAr~~L~I~d~~~ 1030 (1939)
+|+||||+||||++|+|+...+
T Consensus 854 ~RLLYVAlTRA~~~L~l~g~~~ 875 (1141)
T TIGR02784 854 RRLLYVAMTRAEDRLIVCGYRG 875 (1141)
T ss_pred hhHHHHhhhhhhheeEEEeecC
Confidence 9999999999999999987643
No 42
>TIGR00609 recB exodeoxyribonuclease V, beta subunit. All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologs) that function to generate substrates for the initiation of recombination and recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.70 E-value=6.7e-09 Score=144.13 Aligned_cols=78 Identities=28% Similarity=0.399 Sum_probs=51.0
Q ss_pred CCceEEEEeecccCCCCCEEEEeccCCCCCccc-cccCCCCCC----CCCC----hhHhhhhhHHHHhhhheeeeccccc
Q 035724 951 GKQALVLTIVESKGLEFQVIHYTSQCCNSPFKH-ALFDSTSPG----SFPS----FNEAKHNVLCSELKQLYVAITRTRQ 1021 (1939)
Q Consensus 951 ~~~~lVmTihesKGLEF~~Vil~~~~~~~~~~~-~~~~~~~~~----~~~~----~~~~~~~~l~~Elk~LYVA~TRAr~ 1021 (1939)
.+...|||||+|||||||+|||+++........ ...+..... .... ......+.+.+++|+||||+||||.
T Consensus 650 ~~aV~ImTIHkSKGLEfPvVflp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~E~lRLLYVAlTRA~~ 729 (1087)
T TIGR00609 650 AELVKIVTIHKSKGLEYPIVFLPFITDAKKSNFASLHDQHSHEYQLYDFNQSEENQKLARVERLAEDLRLLYVALTRAKK 729 (1087)
T ss_pred cccEEEEEEEccCCCCCCEEEEeccccccCCccceeeeccCCceeecCCcccHHHHHHHHHHHHhHHHHHHHHHHHHHhH
Confidence 346779999999999999999988754322111 111110000 0011 1123445788999999999999999
Q ss_pred eEEEecc
Q 035724 1022 RLWIWEN 1028 (1939)
Q Consensus 1022 ~L~I~d~ 1028 (1939)
+|||.=.
T Consensus 730 ~l~l~~~ 736 (1087)
T TIGR00609 730 QLFIGIA 736 (1087)
T ss_pred eeEEEec
Confidence 9999643
No 43
>PF13538 UvrD_C_2: UvrD-like helicase C-terminal domain; PDB: 1W36_G 3K70_G 3DMN_A 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.66 E-value=3.9e-09 Score=107.07 Aligned_cols=50 Identities=36% Similarity=0.492 Sum_probs=37.3
Q ss_pred ceEEEEeecccCCCCCEEEEeccCCCCCccccccCCCCCCCCCChhHhhhhhHHHHhhhheeeeccccceEEEe
Q 035724 953 QALVLTIVESKGLEFQVIHYTSQCCNSPFKHALFDSTSPGSFPSFNEAKHNVLCSELKQLYVAITRTRQRLWIW 1026 (1939)
Q Consensus 953 ~~lVmTihesKGLEF~~Vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Elk~LYVA~TRAr~~L~I~ 1026 (1939)
.+.++|+|.|||||||.|+++..... ..-....++||||+||||++|+||
T Consensus 55 ~~~~~Tih~akGle~d~V~v~~~~~~------------------------~~~~~~~~~lYva~TRA~~~L~iv 104 (104)
T PF13538_consen 55 HAYAMTIHKAKGLEFDAVIVVDPDSS------------------------NFDELSRRLLYVAITRAKHELYIV 104 (104)
T ss_dssp CCSEEETGGCTT--EEEEEEEEGGGG------------------------SGCGCHHHHHHHHHTTEEEEEEEE
T ss_pred cEEEEEhHHhcCccccEEEEEcCCcc------------------------cCCchhhccEEeeHhHhhhhhCCC
Confidence 67799999999999999999763222 000135677999999999999986
No 44
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.64 E-value=1.5e-06 Score=108.06 Aligned_cols=146 Identities=13% Similarity=0.170 Sum_probs=108.4
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHhCCcchH--------HHHHHhhhHHhhhhhhcC-----------CchHhHHHHHHHHH
Q 035724 1069 KSRGIKLFHEHNYDMATICFEKAKDSYWE--------GRSKATGLKATADRCRSS-----------NPKQANVNLREAAK 1129 (1939)
Q Consensus 1069 ~~lG~~l~~q~~yd~A~kcF~rAgd~~~~--------~l~kA~~l~e~a~~~~s~-----------~~~ea~~~y~eAA~ 1129 (1939)
.++|+.-..-|.|++|.+.|-.+....++ .|.+-+++......-.+. +.-.....|.+|++
T Consensus 738 ~q~aei~~~~g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 738 QQRAEISAFYGEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred HHhHhHhhhhcchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666778899999999887653333 244444443221100000 00012335888999
Q ss_pred HHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcCh-HHHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHHHHHhcCChHHH
Q 035724 1130 IFEAIGKADSAAKCFYNLGEYERAGRIYLERREE-PELEKAGECFFLAGCYKLAADVYAKGKFFSECLAVCSKGKLFEIG 1208 (1939)
Q Consensus 1130 lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e-~~~~qaAe~fE~~G~y~eAAelY~kagd~dkAI~my~k~k~fd~a 1208 (1939)
+|..+|..+.-++|+..+.+|++...+.+...+. ..+...|+.|-..|.-++|.++|.+.+++.+|+..|...++|.+|
T Consensus 818 yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~a 897 (1189)
T KOG2041|consen 818 YYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWGEA 897 (1189)
T ss_pred HHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence 9999998888899999999998887777764333 347899999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 035724 1209 LQYMNH 1214 (1939)
Q Consensus 1209 irLv~q 1214 (1939)
+++++.
T Consensus 898 velaq~ 903 (1189)
T KOG2041|consen 898 VELAQR 903 (1189)
T ss_pred HHHHHh
Confidence 999984
No 45
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=98.62 E-value=4e-08 Score=113.74 Aligned_cols=124 Identities=19% Similarity=0.215 Sum_probs=75.7
Q ss_pred EEeCCCCCchhHHHHHHHHHH---h-cCCcEEEEcccc-------hh---hHHhh--hccCCcEEEEeCCcccchHHhhc
Q 035724 234 LIWGPPGTGKTKTVSMLLDFC---F-TKASLIFCTASS-------SY---KLHRV--AMEQLKFLVIDEAAQLKEVESAI 297 (1939)
Q Consensus 234 LI~GPPGTGKTtti~~li~~~---l-~~a~vI~~T~ss-------s~---~l~~l--~~~~fdvVIIDEASQ~~E~e~li 297 (1939)
+|+||||+||||.+..++... . ........+... .. ..... ....++.+||||+.+++......
T Consensus 2 vv~G~pGsGKSt~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~~~~~~~~~~~liiDE~~~~~~g~l~~ 81 (234)
T PF01443_consen 2 VVHGVPGSGKSTLIKKLLKDRLVVTVISPTIELYTEWLPDPPSKSVRTVDSFLKALVKPKSYDTLIIDEAQLLPPGYLLL 81 (234)
T ss_pred EEEcCCCCCHHHHHHHHHHhccccccccccceeccccccccCCccccEEeEhhhcccccCcCCEEEEeccccCChHHHHH
Confidence 799999999999999988663 0 001011111100 00 00111 11358999999999999765555
Q ss_pred cccCCCcceEEEEeccccCCcceeccccccccccCCHHHHHHhcCCccccccccccCChhhhccCccc
Q 035724 298 PLKLPGIQHAILIGDECQLPAMVESSVSGEACLGRSLFERLSNLGQAKHLLSIQYRMHPSISSFPNSY 365 (1939)
Q Consensus 298 pL~~~~~~rlVLiGD~~QLpPvV~s~~~~~~gl~~SLFeRL~~~~~~~~~L~~QYRmhp~I~~f~S~~ 365 (1939)
.+...+.+.++++||+.|.+..-.........+.... .....+.+.||+...+..+.+..
T Consensus 82 l~~~~~~~~~~l~GDp~Q~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~r~~~~~~~~~~~~ 141 (234)
T PF01443_consen 82 LLSLSPAKNVILFGDPLQIPYISRNDSFLLPHFISDI--------SHRFGKRTSYRCPSDRFDIISAL 141 (234)
T ss_pred HHhhccCcceEEEECchhccCCcccccceecccccce--------eeeecceeEeecccccceeeecc
Confidence 4444456799999999999765422211111111111 23446778899999999998876
No 46
>PRK10876 recB exonuclease V subunit beta; Provisional
Probab=98.61 E-value=1.7e-08 Score=140.54 Aligned_cols=74 Identities=26% Similarity=0.300 Sum_probs=47.9
Q ss_pred CceEEEEeecccCCCCCEEEEeccCCCCCcccccc--CCCCC------CCCCC-hhHhhhhhHHHHhhhheeeeccccce
Q 035724 952 KQALVLTIVESKGLEFQVIHYTSQCCNSPFKHALF--DSTSP------GSFPS-FNEAKHNVLCSELKQLYVAITRTRQR 1022 (1939)
Q Consensus 952 ~~~lVmTihesKGLEF~~Vil~~~~~~~~~~~~~~--~~~~~------~~~~~-~~~~~~~~l~~Elk~LYVA~TRAr~~ 1022 (1939)
+...|||||.|||||||+|||.++..- ......+ +.... ...+. ......+.+++|+|+||||+||||.+
T Consensus 734 ~~V~ImTIH~SKGLEfPvVflp~l~~~-~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~E~l~Ee~RLlYVAlTRAk~~ 812 (1181)
T PRK10876 734 HLVQIVTIHKSKGLEYPLVWLPFITNF-RVQDQAFYHDRHSFEAVLDLNAAEESVALAEEERLAEDLRLLYVALTRSVWH 812 (1181)
T ss_pred CcEEEEEEeccCCcCCCEEEecccccc-cCCccceeecCCCCeeEeecCCcHHHHHHHHHHHHHHHHHHHHHHhhhHhhh
Confidence 467799999999999999999877421 1111111 00000 00000 11123457889999999999999999
Q ss_pred EEEe
Q 035724 1023 LWIW 1026 (1939)
Q Consensus 1023 L~I~ 1026 (1939)
+||.
T Consensus 813 l~l~ 816 (1181)
T PRK10876 813 CSLG 816 (1181)
T ss_pred heeE
Confidence 9993
No 47
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.60 E-value=1e-06 Score=116.07 Aligned_cols=159 Identities=19% Similarity=0.112 Sum_probs=123.3
Q ss_pred chHhHHHHHHHHHHHHHcC--CHHHHHHHHHHhCCHHHHHHHHHHhcCh--HHHHHHHHHHHHcCCHHHHHHHHHHccCH
Q 035724 1117 PKQANVNLREAAKIFEAIG--KADSAAKCFYNLGEYERAGRIYLERREE--PELEKAGECFFLAGCYKLAADVYAKGKFF 1192 (1939)
Q Consensus 1117 ~~ea~~~y~eAA~lYe~~G--~~~kAaecy~kag~~~~A~eLY~e~~~e--~~~~qaAe~fE~~G~y~eAAelY~kagd~ 1192 (1939)
.+.+.+.|..|..+.-++| .++++.++-.+-|.|.+|..+|...... ..++-.|+.+...+.|++||-+|+++|..
T Consensus 889 ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl 968 (1265)
T KOG1920|consen 889 IDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL 968 (1265)
T ss_pred HHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH
Confidence 3457788999999999998 7899999999999999999998752211 23677899999999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcc
Q 035724 1193 SECLAVCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRS 1272 (1939)
Q Consensus 1193 dkAI~my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s 1272 (1939)
++|+..|...++|.+|+.+..+...... + +.
T Consensus 969 ekAl~a~~~~~dWr~~l~~a~ql~~~~d-----------------e---~~----------------------------- 999 (1265)
T KOG1920|consen 969 EKALKAYKECGDWREALSLAAQLSEGKD-----------------E---LV----------------------------- 999 (1265)
T ss_pred HHHHHHHHHhccHHHHHHHHHhhcCCHH-----------------H---HH-----------------------------
Confidence 9999999999999999999885222100 0 00
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHhcCCHHHHHHHHHHc-CCHHHHHHHHHHhCCHHHHHHHHHHH
Q 035724 1273 VDLMRKFLKSLSCFDDLLVLEEESGNFMDAANIARLR-GDIFLAVDLLQKAGCFKEACNVTLNH 1335 (1939)
Q Consensus 1273 ~eeA~~~L~k~~~ldea~ell~e~G~feEAa~Lak~~-Gk~~eAi~my~kAG~~~eA~rva~~~ 1335 (1939)
..-++++.-+.+++++.||+++.+.. +++.+|+..|.+|..|.+|.|++..+
T Consensus 1000 -----------~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1000 -----------ILAEELVSRLVEQRKHYEAAKILLEYLSDPEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred -----------HHHHHHHHHHHHcccchhHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHHHhc
Confidence 00123345556677777787777654 68888888888888888888888776
No 48
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.47 E-value=2.4e-05 Score=103.93 Aligned_cols=55 Identities=20% Similarity=0.148 Sum_probs=29.0
Q ss_pred HHHhCCHHHHHHHHHHHh-----hhhccccCCCCCCCCcchhhHHHHHHHHHhHhhhhhH
Q 035724 1319 LQKAGCFKEACNVTLNHV-----ISNSLWSPGSKGWPLKQFTKKKELLEKAKSLAKNESN 1373 (1939)
Q Consensus 1319 y~kAG~~~eA~rva~~~~-----~~~~l~~~~~~~~~~~~~~~ae~ll~~A~~~~~~~s~ 1373 (1939)
|...|++++|..++.+-+ ....+..-+..-+..+++.+|..++.+|.++++....
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 333466666666655532 0011122233334455677777777777777665444
No 49
>PRK10536 hypothetical protein; Provisional
Probab=98.41 E-value=9.7e-07 Score=103.00 Aligned_cols=104 Identities=18% Similarity=0.144 Sum_probs=69.8
Q ss_pred CCCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHH-HhcC-C-cEEEEccc-c----------h---
Q 035724 206 SSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDF-CFTK-A-SLIFCTAS-S----------S--- 268 (1939)
Q Consensus 206 ~~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~-~l~~-a-~vI~~T~s-s----------s--- 268 (1939)
-.+.|..|..++..+.+ ..+.++.||+|||||+++.++... ++.+ . +++++-+. + .
T Consensus 57 i~p~n~~Q~~~l~al~~-------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~e 129 (262)
T PRK10536 57 ILARNEAQAHYLKAIES-------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAE 129 (262)
T ss_pred ccCCCHHHHHHHHHHhc-------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHH
Confidence 36789999999997765 469999999999999999887743 3222 2 23332000 0 0
Q ss_pred ---------------------hh-HH-------------hh--hccCCcEEEEeCCcccchHHhhcccc-CCCcceEEEE
Q 035724 269 ---------------------YK-LH-------------RV--AMEQLKFLVIDEAAQLKEVESAIPLK-LPGIQHAILI 310 (1939)
Q Consensus 269 ---------------------~~-l~-------------~l--~~~~fdvVIIDEASQ~~E~e~lipL~-~~~~~rlVLi 310 (1939)
.. .. .+ ....-++||||||++++..+.-..+. .....++|++
T Consensus 130 K~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~g~~sk~v~~ 209 (262)
T PRK10536 130 KFAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRLGENVTVIVN 209 (262)
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhcCCCCEEEEe
Confidence 00 00 00 12234899999999999876555443 3457899999
Q ss_pred eccccC
Q 035724 311 GDECQL 316 (1939)
Q Consensus 311 GD~~QL 316 (1939)
||+.|.
T Consensus 210 GD~~Qi 215 (262)
T PRK10536 210 GDITQC 215 (262)
T ss_pred CChhhc
Confidence 999996
No 50
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=98.40 E-value=6.6e-08 Score=128.79 Aligned_cols=64 Identities=31% Similarity=0.423 Sum_probs=50.5
Q ss_pred ceEEEEeecccCCCCCEEEEeccCCCCCccccccCCCCCCCCCChhHhhhh--hHHHHhhhheeeeccccceEEEecccc
Q 035724 953 QALVLTIVESKGLEFQVIHYTSQCCNSPFKHALFDSTSPGSFPSFNEAKHN--VLCSELKQLYVAITRTRQRLWIWENME 1030 (1939)
Q Consensus 953 ~~lVmTihesKGLEF~~Vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~Elk~LYVA~TRAr~~L~I~d~~~ 1030 (1939)
...+||+|.|||||||.||+.++..+ .+|........ .+.+|++++|||+|||+++|+|.-...
T Consensus 554 ~V~lmT~H~aKGlEf~~Vfl~g~~eg--------------~~P~~~~~~~~~~~~eEERRL~YVaiTRA~~~L~~t~~~~ 619 (655)
T COG0210 554 QVNLMTIHAAKGLEFPYVFLVGLEEG--------------LFPADRSLDEGDEPLEEERRLLYVAITRAKKKLYLTYAAS 619 (655)
T ss_pred ceEEEechhccCCCCCeEEEecccCC--------------CCCChhhcccCCCCccHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 67799999999999999999998877 23332111111 388999999999999999999987553
No 51
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.39 E-value=9.9e-07 Score=100.42 Aligned_cols=103 Identities=22% Similarity=0.230 Sum_probs=57.6
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcC---CcEEEEcccch-hh------------
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTK---ASLIFCTASSS-YK------------ 270 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~---a~vI~~T~sss-~~------------ 270 (1939)
.+.|+.|+.++..++. .++.++.||+|||||.++.+.....+.+ .++|++...-. ..
T Consensus 3 ~p~~~~Q~~~~~al~~-------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 3 KPKNEEQKFALDALLN-------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp ---SHHHHHHHHHHHH--------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-------
T ss_pred cCCCHHHHHHHHHHHh-------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 3579999999999996 6799999999999999997776333322 23444311000 00
Q ss_pred -------H---------------------------Hhhhc--cCCcEEEEeCCcccchHHhhccccCC-CcceEEEEecc
Q 035724 271 -------L---------------------------HRVAM--EQLKFLVIDEAAQLKEVESAIPLKLP-GIQHAILIGDE 313 (1939)
Q Consensus 271 -------l---------------------------~~l~~--~~fdvVIIDEASQ~~E~e~lipL~~~-~~~rlVLiGD~ 313 (1939)
+ ..++. ..-.+||||||..++..+.-..+.+- ...++|+.||+
T Consensus 76 ~~p~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 76 MEPYLRPIYDALEELFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRIGEGSKIIITGDP 155 (205)
T ss_dssp --TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB-TT-EEEEEE--
T ss_pred HHHHHHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcccCCCcEEEEecCc
Confidence 0 00011 23389999999999988766666443 46899999999
Q ss_pred ccC
Q 035724 314 CQL 316 (1939)
Q Consensus 314 ~QL 316 (1939)
.|.
T Consensus 156 ~Q~ 158 (205)
T PF02562_consen 156 SQI 158 (205)
T ss_dssp ---
T ss_pred eee
Confidence 996
No 52
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.36 E-value=1.3e-05 Score=96.42 Aligned_cols=177 Identities=21% Similarity=0.328 Sum_probs=101.5
Q ss_pred HHHHHHHHHh-hCHHHHHHHHHHhCCcchH---HHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHH
Q 035724 1069 KSRGIKLFHE-HNYDMATICFEKAKDSYWE---GRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCF 1144 (1939)
Q Consensus 1069 ~~lG~~l~~q-~~yd~A~kcF~rAgd~~~~---~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy 1144 (1939)
...|-..|+. ++|++|..||.+|++.... ....+..+.+.+.-....++..+...|.+|.++|.+.|++..|++++
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~ 117 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCL 117 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 4444445544 8999999999998763321 11112222233333344467777777888888888888887776666
Q ss_pred HHh--------CCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHHHHHhcCChHHHHHHHHhhh
Q 035724 1145 YNL--------GEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKFFSECLAVCSKGKLFEIGLQYMNHWK 1216 (1939)
Q Consensus 1145 ~ka--------g~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd~dkAI~my~k~k~fd~airLv~q~~ 1216 (1939)
.++ +++++|++.| ++|+++|+..|....|.+++.+ +..++.+.++|++|+.+.++..
T Consensus 118 ~~lA~~ye~~~~d~e~Ai~~Y---------~~A~~~y~~e~~~~~a~~~~~~------~A~l~~~l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 118 KELAEIYEEQLGDYEKAIEYY---------QKAAELYEQEGSPHSAAECLLK------AADLYARLGRYEEAIEIYEEVA 182 (282)
T ss_dssp HHHHHHHCCTT--HHHHHHHH---------HHHHHHHHHTT-HHHHHHHHHH------HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHH---------HHHHHHHHHCCChhhHHHHHHH------HHHHHHHhCCHHHHHHHHHHHH
Confidence 542 4555555554 4467777777766666655553 3445677777777777776543
Q ss_pred hcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHH
Q 035724 1217 QHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRSVD 1274 (1939)
Q Consensus 1217 d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s~e 1274 (1939)
...... . ...-...+++-.+..+++..||...|.+++..+...+
T Consensus 183 ~~~l~~--------~------l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~ 226 (282)
T PF14938_consen 183 KKCLEN--------N------LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQD 226 (282)
T ss_dssp HTCCCH--------C------TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTS
T ss_pred HHhhcc--------c------ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 321100 0 1111234444455889999999998988887655443
No 53
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.34 E-value=9.2e-07 Score=109.40 Aligned_cols=133 Identities=17% Similarity=0.173 Sum_probs=81.8
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHH--h-cCCcEEEEcccchhh----------------------HHh---------hhc
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFC--F-TKASLIFCTASSSYK----------------------LHR---------VAM 276 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~--l-~~a~vI~~T~sss~~----------------------l~~---------l~~ 276 (1939)
.+.+|+|.||||||.++..++..+ . ....+++.+...... ... ...
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 81 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNPKLKKSDFRKPTSFINNYSESDKEK 81 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhcccchhhhhhhhhHHHHhhcccccccC
Confidence 478999999999999999999777 2 222333321111100 000 012
Q ss_pred cCCcEEEEeCCcccchH----------HhhccccCCCcceEEEEeccccC-CcceeccccccccccCCHHHHHHhc-CCc
Q 035724 277 EQLKFLVIDEAAQLKEV----------ESAIPLKLPGIQHAILIGDECQL-PAMVESSVSGEACLGRSLFERLSNL-GQA 344 (1939)
Q Consensus 277 ~~fdvVIIDEASQ~~E~----------e~lipL~~~~~~rlVLiGD~~QL-pPvV~s~~~~~~gl~~SLFeRL~~~-~~~ 344 (1939)
..+|+||||||..+.+. ..+.-+.. ..+.+|++-|+.|- .|--. .+...++.+... +..
T Consensus 82 ~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~-~~kv~v~f~D~~Q~i~~~e~--------~~~~~l~~~~~~~~~~ 152 (352)
T PF09848_consen 82 NKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIK-RAKVVVFFYDENQSIRPSEI--------GTLENLEEIAENLGIE 152 (352)
T ss_pred CcCCEEEEehhHhhhhccccccccccHHHHHHHHh-cCCEEEEEEccccEeecccC--------CCHHHHHHHHHhcCCc
Confidence 57999999999999872 22222222 24578888888874 33210 112224444333 322
Q ss_pred --c-ccccccccC--ChhhhccCcccccCCCCC
Q 035724 345 --K-HLLSIQYRM--HPSISSFPNSYFYDNKIF 372 (1939)
Q Consensus 345 --~-~~L~~QYRm--hp~I~~f~S~~FY~gkL~ 372 (1939)
. +.|++|||| .+++.+|....++.....
T Consensus 153 ~~~~~~L~~q~R~~~~~~~~~wI~~ll~~~~~~ 185 (352)
T PF09848_consen 153 VRHFFELKTQFRCHGSKEYIDWIDNLLDNKNIS 185 (352)
T ss_pred cccCcCcCcceecCCCHHHHHHHHHHHhccccC
Confidence 2 389999999 899999999888865444
No 54
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=98.33 E-value=1.9e-06 Score=116.16 Aligned_cols=137 Identities=15% Similarity=0.111 Sum_probs=82.0
Q ss_pred CCcEEEEeCCcccchHHhhc-cccCCCcceEEEEeccccCCcceeccccccccccCCHHHHHHhc--CCccccccccccC
Q 035724 278 QLKFLVIDEAAQLKEVESAI-PLKLPGIQHAILIGDECQLPAMVESSVSGEACLGRSLFERLSNL--GQAKHLLSIQYRM 354 (1939)
Q Consensus 278 ~fdvVIIDEASQ~~E~e~li-pL~~~~~~rlVLiGD~~QLpPvV~s~~~~~~gl~~SLFeRL~~~--~~~~~~L~~QYRm 354 (1939)
.|++|+|||+.-.+..+.-+ -+.....+.+.+|||++|- +. ...|-+...|.++... +...+.|+++||+
T Consensus 209 ~~~~IlVDEfQDtn~~Q~~ll~~L~~~~~~l~vVGD~~Qs---IY----~fRgA~~~~~~~f~~~~~~~~~i~L~~NyRS 281 (726)
T TIGR01073 209 KFQYIHVDEYQDTNRAQYTLVRLLASRFRNLCVVGDADQS---IY----GWRGADIQNILSFEKDYPNATTILLEQNYRS 281 (726)
T ss_pred hCCEEEEEccccCCHHHHHHHHHHhCCCCEEEEEeCCCcc---cc----ccCCCChHHHHHHHHhCCCCeEEECccCCCC
Confidence 78999999999998875432 2222235789999999992 21 1112233344444332 2346789999999
Q ss_pred ChhhhccCcccccCCCCCCCCcccccccccccCCCCCCCCeEEEEcCCCccccCCCCcCCHHHHHHHHHHHHHHHHcCCC
Q 035724 355 HPSISSFPNSYFYDNKIFDSPNVKEKNYEKRFLPGRMYGPYSFINVLDGREESIAHSYRNMVEVFVVMKILLNLYKVHNV 434 (1939)
Q Consensus 355 hp~I~~f~S~~FY~gkL~~~~~v~~~~~~~~~l~~p~~~p~~Fidv~~G~Ee~~g~S~~N~~EA~~V~~lV~~L~~~~~~ 434 (1939)
+|.|.++.|..+-.+.-...... ....+...++.++.. . .-..||..|++.+..|+..+..
T Consensus 282 ~~~Il~~an~li~~~~~r~~~~l--------~~~~~~g~~v~~~~~-~----------~~~~Ea~~ia~~I~~l~~~~~~ 342 (726)
T TIGR01073 282 TKNILQAANEVIEHNSNRKPKNL--------WTENSSGDKITYYEA-D----------TERDEAQFVAGEIDKLVKNGER 342 (726)
T ss_pred CHHHHHHHHHHHHhccccccccc--------ccCCCCCcceEEEeC-C----------CHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999987654321111000 001111123444433 1 1246999999999999987654
Q ss_pred CCcceE
Q 035724 435 SNLCSS 440 (1939)
Q Consensus 435 ~~~~I~ 440 (1939)
....|.
T Consensus 343 ~~~diA 348 (726)
T TIGR01073 343 KYGDFA 348 (726)
T ss_pred CcCCEE
Confidence 444554
No 55
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.33 E-value=1.4e-06 Score=115.05 Aligned_cols=79 Identities=19% Similarity=0.204 Sum_probs=58.6
Q ss_pred eEEEEEcChhHHHHHhhhhCC---ceEEEEeecccCCCCCEEEEeccCCCCCccccccCCCCCCCCCChhHhhhhhHHHH
Q 035724 932 EQVILVRDDCVRKEISNYVGK---QALVLTIVESKGLEFQVIHYTSQCCNSPFKHALFDSTSPGSFPSFNEAKHNVLCSE 1008 (1939)
Q Consensus 932 ~q~IlVr~~~~k~~i~~~l~~---~~lVmTihesKGLEF~~Vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~E 1008 (1939)
..+||++...+...|.+.+.. ..-|-|++...|-|.|.||+--+.++.. ... ....+
T Consensus 529 ~IgVItPY~aQv~~L~~~l~~~~~~i~v~TVd~fQG~E~DvIi~S~vrsn~~---------~~~-----------gFl~d 588 (637)
T TIGR00376 529 DIGVITPYDAQVDLLRQLLEHRHIDIEVSSVDGFQGREKEVIIISFVRSNRK---------GEV-----------GFLKD 588 (637)
T ss_pred eEEEEcccHHHHHHHHHHHHhhCCCeEEccccccCCccccEEEEEEEecCCC---------CCc-----------ccccC
Confidence 458999999999988887743 2359999999999999999855443300 000 01135
Q ss_pred hhhheeeeccccceEEEecccc
Q 035724 1009 LKQLYVAITRTRQRLWIWENME 1030 (1939)
Q Consensus 1009 lk~LYVA~TRAr~~L~I~d~~~ 1030 (1939)
.+.|+||+||||+.|+|+-+..
T Consensus 589 ~rRLNVAlTRAK~~LiIvGn~~ 610 (637)
T TIGR00376 589 LRRLNVALTRARRKLIVIGDSR 610 (637)
T ss_pred cceeeeehhhhhCceEEEECHH
Confidence 6779999999999999998664
No 56
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=98.33 E-value=3.2e-06 Score=113.74 Aligned_cols=130 Identities=16% Similarity=0.168 Sum_probs=77.7
Q ss_pred CCcEEEEeCCcccchHHhhc-cccCCCcceEEEEeccccCCcceeccccccccccCCHHHHHHhc--CCccccccccccC
Q 035724 278 QLKFLVIDEAAQLKEVESAI-PLKLPGIQHAILIGDECQLPAMVESSVSGEACLGRSLFERLSNL--GQAKHLLSIQYRM 354 (1939)
Q Consensus 278 ~fdvVIIDEASQ~~E~e~li-pL~~~~~~rlVLiGD~~QLpPvV~s~~~~~~gl~~SLFeRL~~~--~~~~~~L~~QYRm 354 (1939)
.|++|+|||+.-.+..+..+ -+......++.+|||++|- + -...|-+...|.++... +...+.|+++||+
T Consensus 213 ~~~~IlVDEfQDtn~~Q~~ll~~L~~~~~~l~vVGD~dQs---I----Y~fRGA~~~~~~~f~~~~~~~~~i~L~~NyRS 285 (721)
T PRK11773 213 RFTHILVDEFQDTNAIQYAWIRLLAGDTGKVMIVGDDDQS---I----YGWRGAQVENIQRFLNDFPGAETIRLEQNYRS 285 (721)
T ss_pred hCCEEEEEchhcCCHHHHHHHHHHhCCCCeEEEEecCccc---c----cccCCCChHHHHHHHHhCCCCeEEECCcCCCC
Confidence 67999999999998764332 2222245789999999992 1 11112233444444332 3456889999999
Q ss_pred ChhhhccCcccccCCCCCCCCcccccccccccCCCCCC-CCeEEEEcCCCccccCCCCcCCHHHHHHHHHHHHHHHHcCC
Q 035724 355 HPSISSFPNSYFYDNKIFDSPNVKEKNYEKRFLPGRMY-GPYSFINVLDGREESIAHSYRNMVEVFVVMKILLNLYKVHN 433 (1939)
Q Consensus 355 hp~I~~f~S~~FY~gkL~~~~~v~~~~~~~~~l~~p~~-~p~~Fidv~~G~Ee~~g~S~~N~~EA~~V~~lV~~L~~~~~ 433 (1939)
.+.|.++.|..+-.+.-..... ..+.... .++.++.. .....||..|++.+..++..+.
T Consensus 286 t~~Il~~an~li~~n~~r~~k~---------~~~~~~~g~~v~~~~~-----------~~~~~Ea~~ia~~I~~l~~~g~ 345 (721)
T PRK11773 286 TANILKAANALIANNNGRLGKE---------LWTDGGDGEPISLYCA-----------FNELDEARFVVERIKTWQDNGG 345 (721)
T ss_pred CHHHHHHHHHHHHhcccccCcc---------cccCCCCCCeeEEEeC-----------CCHHHHHHHHHHHHHHHHHcCC
Confidence 9999999997765432111100 0011001 12223222 1124699999999999987754
Q ss_pred C
Q 035724 434 V 434 (1939)
Q Consensus 434 ~ 434 (1939)
.
T Consensus 346 ~ 346 (721)
T PRK11773 346 A 346 (721)
T ss_pred C
Confidence 3
No 57
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=98.31 E-value=3.7e-06 Score=113.21 Aligned_cols=132 Identities=17% Similarity=0.214 Sum_probs=78.6
Q ss_pred cCCcEEEEeCCcccchHHhhcc-ccCCCcceEEEEeccccCCcceeccccccccccCCHHHHHHhc--CCcccccccccc
Q 035724 277 EQLKFLVIDEAAQLKEVESAIP-LKLPGIQHAILIGDECQLPAMVESSVSGEACLGRSLFERLSNL--GQAKHLLSIQYR 353 (1939)
Q Consensus 277 ~~fdvVIIDEASQ~~E~e~lip-L~~~~~~rlVLiGD~~QLpPvV~s~~~~~~gl~~SLFeRL~~~--~~~~~~L~~QYR 353 (1939)
..|++|+|||..-.+..+..+. .......++.+|||++|= +. ...|-+...|.++... +...+.|+++||
T Consensus 207 ~~~~~ilVDEfQDtn~~Q~~ll~~L~~~~~~l~vVGD~~Qs---IY----~fRGA~~~~i~~f~~~~~~~~~~~L~~NyR 279 (715)
T TIGR01075 207 ERFTHILVDEFQDTNKIQYAWIRLLAGNTGNVMIVGDDDQS---IY----GWRGAQVENIQKFLKDFPGAETIRLEQNYR 279 (715)
T ss_pred HhCCEEEEEccccCCHHHHHHHHHHhCCCCeEEEEeCCccc---cc----ccCCCCHHHHHHHHHhCCCCeEEECcccCC
Confidence 3679999999999987754333 222245789999999991 11 1112233344444332 234688999999
Q ss_pred CChhhhccCcccccCCCCCCCCcccccccccccCCCCCCCCeEEEEcCCCccccCCCCcCCHHHHHHHHHHHHHHHHcCC
Q 035724 354 MHPSISSFPNSYFYDNKIFDSPNVKEKNYEKRFLPGRMYGPYSFINVLDGREESIAHSYRNMVEVFVVMKILLNLYKVHN 433 (1939)
Q Consensus 354 mhp~I~~f~S~~FY~gkL~~~~~v~~~~~~~~~l~~p~~~p~~Fidv~~G~Ee~~g~S~~N~~EA~~V~~lV~~L~~~~~ 433 (1939)
+++.|.++.|..+-.+.-..... . +...+.-.++.++.. ..-..||+.|++.+..++..+.
T Consensus 280 S~~~Il~~an~li~~~~~r~~~~-----~---~~~~~~g~~i~~~~~-----------~~~~~Ea~~ia~~I~~l~~~g~ 340 (715)
T TIGR01075 280 STANILAAANALIANNDERLGKN-----L---WTDGEVGEPISLYSA-----------FNELDEARFVVSRIKTWQRNGG 340 (715)
T ss_pred CCHHHHHHHHHHHHhcccccccc-----c---cCCCCCCCceEEEeC-----------CCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999998775432111100 0 000110113333332 0124699999999999988754
Q ss_pred C
Q 035724 434 V 434 (1939)
Q Consensus 434 ~ 434 (1939)
.
T Consensus 341 ~ 341 (715)
T TIGR01075 341 A 341 (715)
T ss_pred C
Confidence 3
No 58
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.30 E-value=1e-05 Score=97.08 Aligned_cols=173 Identities=14% Similarity=0.143 Sum_probs=86.0
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcC----hHHHHHHHHHHHHcCCHHHHHHHHHHccCHHH
Q 035724 1119 QANVNLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERRE----EPELEKAGECFFLAGCYKLAADVYAKGKFFSE 1194 (1939)
Q Consensus 1119 ea~~~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~----e~~~~qaAe~fE~~G~y~eAAelY~kagd~dk 1194 (1939)
++-..|.+||..|...|++++|++||.++.+ ++.+.-. ...+.++|.++.+. ++.+|.++| .+
T Consensus 33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~------~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~------~~ 99 (282)
T PF14938_consen 33 EAADLYEKAANCFKLAKDWEKAAEAYEKAAD------CYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECY------EK 99 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHH------HHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHH------HH
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHH------HHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHH------HH
Confidence 3444566666666666666666555554432 2222000 01244445554444 444444443 34
Q ss_pred HHHHHHhcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhc-CCHHHHHHHHHH-hcc
Q 035724 1195 CLAVCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGL-QDKKSMMKFVKS-FRS 1272 (1939)
Q Consensus 1195 AI~my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~ka-gD~k~A~~~~~~-~~s 1272 (1939)
|+++|.+.|.++.+.+.... ++..|... ||.+.|+++|.. .+.
T Consensus 100 A~~~y~~~G~~~~aA~~~~~-----------------------------------lA~~ye~~~~d~e~Ai~~Y~~A~~~ 144 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKE-----------------------------------LAEIYEEQLGDYEKAIEYYQKAAEL 144 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHH-----------------------------------HHHHHCCTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHH-----------------------------------HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45556666665555544442 24445554 555555555542 111
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHhcCCHHHHHHHHHHc---------------CCHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 035724 1273 VDLMRKFLKSLSCFDDLLVLEEESGNFMDAANIARLR---------------GDIFLAVDLLQKAGCFKEACNVTLNHVI 1337 (1939)
Q Consensus 1273 ~eeA~~~L~k~~~ldea~ell~e~G~feEAa~Lak~~---------------Gk~~eAi~my~kAG~~~eA~rva~~~~~ 1337 (1939)
.+.-..-.....++..++.++.+.|+|++|.+++++. +-+..|+-.+...||...|.+.+..|+-
T Consensus 145 y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 145 YEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1111111122344556778888888888888777643 1124466666667777777777776664
Q ss_pred hh
Q 035724 1338 SN 1339 (1939)
Q Consensus 1338 ~~ 1339 (1939)
.+
T Consensus 225 ~~ 226 (282)
T PF14938_consen 225 QD 226 (282)
T ss_dssp TS
T ss_pred hC
Confidence 44
No 59
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=98.27 E-value=3.1e-07 Score=106.40 Aligned_cols=50 Identities=30% Similarity=0.432 Sum_probs=37.7
Q ss_pred EEEEeecccCCCCCEEEEeccCCCCCccccccCCCCCCCCCChhHhhhhhHHHHhhhheeeeccccceEEEe
Q 035724 955 LVLTIVESKGLEFQVIHYTSQCCNSPFKHALFDSTSPGSFPSFNEAKHNVLCSELKQLYVAITRTRQRLWIW 1026 (1939)
Q Consensus 955 lVmTihesKGLEF~~Vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Elk~LYVA~TRAr~~L~I~ 1026 (1939)
.++|+|+|+|+|||.|.++-..... ........+.+|||+|||+++|.|+
T Consensus 184 ~~~T~~e~qG~tf~~V~l~~~~~~~----------------------~~~~~~~~~~~~VALTR~~~~l~i~ 233 (234)
T PF01443_consen 184 RVFTVHESQGLTFDNVTLVLLSDTD----------------------NELYSESRNHLYVALTRHTKSLVIL 233 (234)
T ss_pred ceechHHcceEEeCCEEEEECCCcc----------------------cccccCCcccEEEEccccccEEEEE
Confidence 5899999999999999997532210 0011123788999999999999986
No 60
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=98.27 E-value=3.4e-07 Score=113.84 Aligned_cols=147 Identities=21% Similarity=0.327 Sum_probs=93.1
Q ss_pred cCCCCcCCCCCCCchhHHHHHhHHHhhccccccchhh-cchhhhhccCCCccccccCCCCEEEcccCcHHHH---HHHhh
Q 035724 842 DIPNSFADIPAESHPLVITFHKFLMMLDGTLGSSYFE-RFHDIRKHHGQPETSLIYGEPPILLESRNDENAI---IKIFG 917 (1939)
Q Consensus 842 ~~~~~~~dl~~~~~pLfit~r~~l~iLd~~l~~s~~~-~f~~~~~~~g~~e~s~~~Gp~P~l~~~~~~~~~~---~~~~~ 917 (1939)
++-..|.|-+-+-+.|--+||+-..|.+ ..+++.+ +| .-+.=..+|++|.++.+...+... ...++
T Consensus 579 ~~~~~fed~~~e~v~l~~syrSt~eI~e--fan~~l~d~~--------~~~p~~rsge~p~~i~~~~ne~l~qr~~~ii~ 648 (747)
T COG3973 579 RMDVFFEDPSFEYVGLIASYRSTAEIDE--FANSLLPDRF--------RIHPLTRSGEKPAVIMSVANEELVQRNPDIIP 648 (747)
T ss_pred HHHHHHhCCCchhhhhhhhhcChHHHHH--HHHHhccCCC--------ccchhhcCCCCceeeeccchHHHHHhhHHHHH
Confidence 3444555654444555566777766664 3444443 22 123345799999999766654211 12233
Q ss_pred ccCCCCCCccccCceEEEEEcChhHHHHHhhhhCC----------------ceEEEEeecccCCCCCEEEEeccCCCCCc
Q 035724 918 NSGDAGGNMVGFGAEQVILVRDDCVRKEISNYVGK----------------QALVLTIVESKGLEFQVIHYTSQCCNSPF 981 (1939)
Q Consensus 918 ~~~~~~~~~~efga~q~IlVr~~~~k~~i~~~l~~----------------~~lVmTihesKGLEF~~Vil~~~~~~~~~ 981 (1939)
...+.|.. ..|||+++..+-..+.+.+.+ ...|+.++-+||||||+||+|+.. -
T Consensus 649 ~mkk~~~e------tiaVi~kt~~d~~~~~d~lre~~~~r~I~k~nq~f~~~~~vipvy~aKGlEFD~viv~d~s-~--- 718 (747)
T COG3973 649 RMKKRGSE------TIAVICKTDHDCKAVMDSLREKDSQRTIAKENQRFHHGSDVIPVYDAKGLEFDHVIVVDPS-I--- 718 (747)
T ss_pred HHHhcCCC------ceEEECCcHHHHHHHHHHHhhcchhhHHHhhcccccCCceEEEeeecccceeeeEEEecch-h---
Confidence 32222222 358999998887777776532 124999999999999999999842 1
Q ss_pred cccccCCCCCCCCCChhHhhhhhHHHHhhhheeeeccccceEEEecc
Q 035724 982 KHALFDSTSPGSFPSFNEAKHNVLCSELKQLYVAITRTRQRLWIWEN 1028 (1939)
Q Consensus 982 ~~~~~~~~~~~~~~~~~~~~~~~l~~Elk~LYVA~TRAr~~L~I~d~ 1028 (1939)
++.-...++.||||+|||...|+|+-.
T Consensus 719 --------------------~e~te~~~r~LYva~TRAlh~l~if~~ 745 (747)
T COG3973 719 --------------------VEETEQDLRDLYVAVTRALHSLYIFGE 745 (747)
T ss_pred --------------------hcccccchhhHHHHHHHHHHHHHHhhc
Confidence 111224689999999999999988753
No 61
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.27 E-value=0.00015 Score=98.37 Aligned_cols=279 Identities=15% Similarity=0.051 Sum_probs=137.1
Q ss_pred CCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcch--HH----HHHHh---hhHHhh----hhhhcCCchHhHHHHHHHHH
Q 035724 1063 SSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYW--EG----RSKAT---GLKATA----DRCRSSNPKQANVNLREAAK 1129 (1939)
Q Consensus 1063 StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~--~~----l~kA~---~l~e~a----~~~~s~~~~ea~~~y~eAA~ 1129 (1939)
..+..|..+|..+...+++++|..+|.++-.... .. +...+ +..+.+ +......|. ....+...+.
T Consensus 463 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 541 (899)
T TIGR02917 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAG 541 (899)
T ss_pred CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHH
Confidence 3556777778877777888888888877632110 00 00000 000000 000011111 1122334455
Q ss_pred HHHHcCCHHHHHHHH---------------------HHhCCHHHHHHHHHHhcC-----hHHHHHHHHHHHHcCCHHHHH
Q 035724 1130 IFEAIGKADSAAKCF---------------------YNLGEYERAGRIYLERRE-----EPELEKAGECFFLAGCYKLAA 1183 (1939)
Q Consensus 1130 lYe~~G~~~kAaecy---------------------~kag~~~~A~eLY~e~~~-----e~~~~qaAe~fE~~G~y~eAA 1183 (1939)
+|...|++++|.++| .+.|++++|.+++.+... ...+...|.++...|++++|.
T Consensus 542 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 621 (899)
T TIGR02917 542 LYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAV 621 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 555555555554443 334566666666554311 123555666666777777777
Q ss_pred HHHHHccC--------HHHHHHHHHhcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHH
Q 035724 1184 DVYAKGKF--------FSECLAVCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYY 1255 (1939)
Q Consensus 1184 elY~kagd--------~dkAI~my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~ 1255 (1939)
++|.++-+ +.....++.+.+++++|+...++..+..+.. .......+..+.
T Consensus 622 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------------~~~~~~l~~~~~ 680 (899)
T TIGR02917 622 SSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDN---------------------TEAQIGLAQLLL 680 (899)
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------------HHHHHHHHHHHH
Confidence 77665411 2233445556666666666665432221110 001111244456
Q ss_pred hcCCHHHHHHHHHHhccHHHHHHHHHhhcCHHHHHHHHHhcCCHHHHHHHHHHc-------CCHHHHHHHHHHhCCHHHH
Q 035724 1256 GLQDKKSMMKFVKSFRSVDLMRKFLKSLSCFDDLLVLEEESGNFMDAANIARLR-------GDIFLAVDLLQKAGCFKEA 1328 (1939)
Q Consensus 1256 kagD~k~A~~~~~~~~s~eeA~~~L~k~~~ldea~ell~e~G~feEAa~Lak~~-------Gk~~eAi~my~kAG~~~eA 1328 (1939)
+.|++++|.+++........ .....+......+...|++++|.+.++.. ......+.+|.+.|++.+|
T Consensus 681 ~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 755 (899)
T TIGR02917 681 AAKRTESAKKIAKSLQKQHP-----KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEA 755 (899)
T ss_pred HcCCHHHHHHHHHHHHhhCc-----CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHH
Confidence 66666666665543322110 00011222345666777777776665542 1122345667778888888
Q ss_pred HHHHHHHhh-----hhccccCCCCCCCCcchhhHHHHHHHHHhHh
Q 035724 1329 CNVTLNHVI-----SNSLWSPGSKGWPLKQFTKKKELLEKAKSLA 1368 (1939)
Q Consensus 1329 ~rva~~~~~-----~~~l~~~~~~~~~~~~~~~ae~ll~~A~~~~ 1368 (1939)
...+.++.- ..++-.-+......+++.+|++.+.++....
T Consensus 756 ~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 800 (899)
T TIGR02917 756 VKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA 800 (899)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 777766531 1111122222233456788888888877643
No 62
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=98.15 E-value=3.3e-06 Score=112.53 Aligned_cols=83 Identities=16% Similarity=0.100 Sum_probs=58.1
Q ss_pred CCcEEEEeCCcccchHHhhcccc-CCCcceEEEEeccccCCcceeccccccccccCCHHHHHHhc--CCccccccccccC
Q 035724 278 QLKFLVIDEAAQLKEVESAIPLK-LPGIQHAILIGDECQLPAMVESSVSGEACLGRSLFERLSNL--GQAKHLLSIQYRM 354 (1939)
Q Consensus 278 ~fdvVIIDEASQ~~E~e~lipL~-~~~~~rlVLiGD~~QLpPvV~s~~~~~~gl~~SLFeRL~~~--~~~~~~L~~QYRm 354 (1939)
.|++|+|||+.-.+..+.-+.-. ..+..++++|||+.|-- -.-.|-+...|.++... +...+.|+++||+
T Consensus 207 ~~~~ilVDE~QDtn~~Q~~ll~~l~~~~~~l~~VGD~~QsI-------Y~frGA~~~~~~~f~~~~~~~~~~~L~~NyRs 279 (672)
T PRK10919 207 KIRYLLVDEYQDTNTSQYELVKLLVGSRARFTVVGDDDQSI-------YSWRGARPQNLVLLSQDFPALQVIKLEQNYRS 279 (672)
T ss_pred cCCEEEEEchhcCCHHHHHHHHHHHcCCCEEEEEcCCcccc-------cccCCCChHHHHHHHHhCCCCcEEECCCCCCC
Confidence 68999999999998875433222 22356899999999932 11123344555555442 2456789999999
Q ss_pred ChhhhccCccccc
Q 035724 355 HPSISSFPNSYFY 367 (1939)
Q Consensus 355 hp~I~~f~S~~FY 367 (1939)
++.|..+.|..+=
T Consensus 280 ~~~I~~~an~li~ 292 (672)
T PRK10919 280 SGRILKAANILIA 292 (672)
T ss_pred cHHHHHHHHHHHh
Confidence 9999999997764
No 63
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.08 E-value=0.00042 Score=94.01 Aligned_cols=278 Identities=13% Similarity=-0.000 Sum_probs=149.7
Q ss_pred CCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcch----HHH--HHHh---hhHHhh----hhhhcCCchHhHHHHHHHHH
Q 035724 1063 SSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYW----EGR--SKAT---GLKATA----DRCRSSNPKQANVNLREAAK 1129 (1939)
Q Consensus 1063 StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~----~~l--~kA~---~l~e~a----~~~~s~~~~ea~~~y~eAA~ 1129 (1939)
..+.-|..+|..+...+++++|+++|.++-.... ... ...+ +..+.+ .......|. ....+...+.
T Consensus 395 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 473 (899)
T TIGR02917 395 ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPD-NASLHNLLGA 473 (899)
T ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CcHHHHHHHH
Confidence 3455677788888888888888888887643211 000 0000 000000 001111111 1223455666
Q ss_pred HHHHcCCHHHHHHHHHH---------------------hCCHHHHHHHHHHhcC-----hHHHHHHHHHHHHcCCHHHHH
Q 035724 1130 IFEAIGKADSAAKCFYN---------------------LGEYERAGRIYLERRE-----EPELEKAGECFFLAGCYKLAA 1183 (1939)
Q Consensus 1130 lYe~~G~~~kAaecy~k---------------------ag~~~~A~eLY~e~~~-----e~~~~qaAe~fE~~G~y~eAA 1183 (1939)
.|...|++++|.++|.+ .|++++|.+.|.+... ...+...|..+...|++++|.
T Consensus 474 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 553 (899)
T TIGR02917 474 IYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAV 553 (899)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHH
Confidence 66667777666666543 4666777777665421 123566677777788888888
Q ss_pred HHHHHccC--------HHHHHHHHHhcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHH
Q 035724 1184 DVYAKGKF--------FSECLAVCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYY 1255 (1939)
Q Consensus 1184 elY~kagd--------~dkAI~my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~ 1255 (1939)
++|.++-. +-..+.+|.+.+++++|+.+.++..+..+.. ...+...+..|.
T Consensus 554 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------------~~~~~~l~~~~~ 612 (899)
T TIGR02917 554 AWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDS---------------------PEAWLMLGRAQL 612 (899)
T ss_pred HHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC---------------------HHHHHHHHHHHH
Confidence 87776611 2234456677777787777777543321111 112223366677
Q ss_pred hcCCHHHHHHHHHHhccHHHHHHHHHhhcCHHHHHHHHHhcCCHHHHHHHHHHc-----C---CHHHHHHHHHHhCCHHH
Q 035724 1256 GLQDKKSMMKFVKSFRSVDLMRKFLKSLSCFDDLLVLEEESGNFMDAANIARLR-----G---DIFLAVDLLQKAGCFKE 1327 (1939)
Q Consensus 1256 kagD~k~A~~~~~~~~s~eeA~~~L~k~~~ldea~ell~e~G~feEAa~Lak~~-----G---k~~eAi~my~kAG~~~e 1327 (1939)
..|++++|++.+...-.... .....+...+..+...|++++|...+++. + -....+.+|.+.|++++
T Consensus 613 ~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 687 (899)
T TIGR02917 613 AAGDLNKAVSSFKKLLALQP-----DSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTES 687 (899)
T ss_pred HcCCHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 88888888876653321110 00011233456666778888877766542 1 11234566777788888
Q ss_pred HHHHHHHHh-----hhhccccCCCCCCCCcchhhHHHHHHHHHhH
Q 035724 1328 ACNVTLNHV-----ISNSLWSPGSKGWPLKQFTKKKELLEKAKSL 1367 (1939)
Q Consensus 1328 A~rva~~~~-----~~~~l~~~~~~~~~~~~~~~ae~ll~~A~~~ 1367 (1939)
|.+++..-. ...++...+......+++.+|.+.+.+|...
T Consensus 688 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 732 (899)
T TIGR02917 688 AKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR 732 (899)
T ss_pred HHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 877665432 1111111222333445677777777777663
No 64
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.06 E-value=0.00018 Score=89.70 Aligned_cols=192 Identities=11% Similarity=0.091 Sum_probs=107.1
Q ss_pred hCCHHHHHHHHHHhcC--h---HHHHHHHHHHHHcCCHHHHHHHHHHccC----HHHH----HHHHHhcCChHHHHHHHH
Q 035724 1147 LGEYERAGRIYLERRE--E---PELEKAGECFFLAGCYKLAADVYAKGKF----FSEC----LAVCSKGKLFEIGLQYMN 1213 (1939)
Q Consensus 1147 ag~~~~A~eLY~e~~~--e---~~~~qaAe~fE~~G~y~eAAelY~kagd----~dkA----I~my~k~k~fd~airLv~ 1213 (1939)
.|+..+|+.-|.++.+ . ..|-..|..+.+++.|++|.-+|.++-. +..| .-+|.+.|+.|.|++--+
T Consensus 231 ~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Yk 310 (966)
T KOG4626|consen 231 QGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYK 310 (966)
T ss_pred cchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHH
Confidence 3555566666655421 1 3477779999999999999999998821 1111 113444555554444333
Q ss_pred hhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHh--ccHHHHHHHHHhhcCHHHHHH
Q 035724 1214 HWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSF--RSVDLMRKFLKSLSCFDDLLV 1291 (1939)
Q Consensus 1214 q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~--~s~eeA~~~L~k~~~ldea~e 1291 (1939)
+ .+..+ .+...++ ..-++.....|+..+|+.+|... -.|.. -+-+-.+..
T Consensus 311 r---al~~~-----------P~F~~Ay-------~NlanALkd~G~V~ea~~cYnkaL~l~p~h-------adam~NLgn 362 (966)
T KOG4626|consen 311 R---ALELQ-----------PNFPDAY-------NNLANALKDKGSVTEAVDCYNKALRLCPNH-------ADAMNNLGN 362 (966)
T ss_pred H---HHhcC-----------CCchHHH-------hHHHHHHHhccchHHHHHHHHHHHHhCCcc-------HHHHHHHHH
Confidence 1 11111 1111111 12255677778888888887632 12221 122334456
Q ss_pred HHHhcCCHHHHHHHHHHc----CCHHHH----HHHHHHhCCHHHHHHHHHHH-----hhhhccccCCCCCCCCcchhhHH
Q 035724 1292 LEEESGNFMDAANIARLR----GDIFLA----VDLLQKAGCFKEACNVTLNH-----VISNSLWSPGSKGWPLKQFTKKK 1358 (1939)
Q Consensus 1292 ll~e~G~feEAa~Lak~~----Gk~~eA----i~my~kAG~~~eA~rva~~~-----~~~~~l~~~~~~~~~~~~~~~ae 1358 (1939)
.+.+.|++++|..+++.. -.+.+| +-.|.+.|...+|......- .+++.|..-+..--+.++-..|.
T Consensus 363 i~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~ 442 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAI 442 (966)
T ss_pred HHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHH
Confidence 667777777775555433 111111 22344444444444333332 47788888888888888888899
Q ss_pred HHHHHHHh
Q 035724 1359 ELLEKAKS 1366 (1939)
Q Consensus 1359 ~ll~~A~~ 1366 (1939)
+++.||..
T Consensus 443 q~y~rAI~ 450 (966)
T KOG4626|consen 443 QCYTRAIQ 450 (966)
T ss_pred HHHHHHHh
Confidence 99999876
No 65
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.04 E-value=0.0013 Score=81.93 Aligned_cols=23 Identities=17% Similarity=0.089 Sum_probs=12.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHc
Q 035724 1167 EKAGECFFLAGCYKLAADVYAKG 1189 (1939)
Q Consensus 1167 ~qaAe~fE~~G~y~eAAelY~ka 1189 (1939)
...|..+.+.|+|++|.++|.+.
T Consensus 145 ~~la~~~~~~g~~~~A~~~~~~~ 167 (389)
T PRK11788 145 QQLLEIYQQEKDWQKAIDVAERL 167 (389)
T ss_pred HHHHHHHHHhchHHHHHHHHHHH
Confidence 34455555566666666665544
No 66
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=6.8e-05 Score=84.86 Aligned_cols=182 Identities=18% Similarity=0.242 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHh-hCHHHHHHHHHHhCCcchHH---HHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHH
Q 035724 1067 EWKSRGIKLFHE-HNYDMATICFEKAKDSYWEG---RSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAK 1142 (1939)
Q Consensus 1067 eW~~lG~~l~~q-~~yd~A~kcF~rAgd~~~~~---l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAae 1142 (1939)
|...+|..+++. ++|+.|-.+|.+|.+.+... ...+-...+.....+..+|.++......|.++|...|++..|++
T Consensus 35 dl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk 114 (288)
T KOG1586|consen 35 ELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAK 114 (288)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHh
Confidence 556666666666 78888888887776533321 11222233444555666777777777777777777777777755
Q ss_pred HHHHhCCHHHHHHHHHHhcC-----hHHHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHHHHHhcCChHHHHHHHHhhhh
Q 035724 1143 CFYNLGEYERAGRIYLERRE-----EPELEKAGECFFLAGCYKLAADVYAKGKFFSECLAVCSKGKLFEIGLQYMNHWKQ 1217 (1939)
Q Consensus 1143 cy~kag~~~~A~eLY~e~~~-----e~~~~qaAe~fE~~G~y~eAAelY~kagd~dkAI~my~k~k~fd~airLv~q~~d 1217 (1939)
.++..+ ++|..-+. -..|+++|+||.....-..|-+++.|+-+| ....++|.+|+++-++...
T Consensus 115 ~~~~ia------EiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~y------aa~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 115 HHIEIA------EIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQY------AAQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred hhhhHH------HHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 554433 33332100 012566777776665555555555554332 2223333444444443222
Q ss_pred cccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHH
Q 035724 1218 HADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRSVD 1274 (1939)
Q Consensus 1218 ~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s~e 1274 (1939)
+.. ...+.+ + ...+++-.++.+++...|.-.+..++..+...+
T Consensus 183 ~s~--------~n~LLK-----y-s~KdyflkAgLChl~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 183 SSL--------DNNLLK-----Y-SAKDYFLKAGLCHLCKADEVNAQRALEKYQELD 225 (288)
T ss_pred Hhc--------cchHHH-----h-HHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence 111 011111 1 244566677999999898777777666554444
No 67
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=98.02 E-value=3.1e-05 Score=103.76 Aligned_cols=83 Identities=14% Similarity=0.083 Sum_probs=54.5
Q ss_pred CCcEEEEeCCcccchHHhhcccc-CCCcceEEEEeccccCCcceeccccccccccCCHHHHHHhc--CCccccccccccC
Q 035724 278 QLKFLVIDEAAQLKEVESAIPLK-LPGIQHAILIGDECQLPAMVESSVSGEACLGRSLFERLSNL--GQAKHLLSIQYRM 354 (1939)
Q Consensus 278 ~fdvVIIDEASQ~~E~e~lipL~-~~~~~rlVLiGD~~QLpPvV~s~~~~~~gl~~SLFeRL~~~--~~~~~~L~~QYRm 354 (1939)
.|++|+|||....+..+.-+.-. ......+.+|||++|-.= .-.|-+...|.++... +...+.|.++||+
T Consensus 206 ~~~~ilVDEfQD~~~~Q~~ll~~L~~~~~~l~~vGD~~QsIY-------~frga~~~~~~~~~~~~~~~~~~~L~~NyRs 278 (664)
T TIGR01074 206 KIRYLLVDEYQDTNTSQYELVKLLVGDRARFTVVGDDDQSIY-------SWRGARPENLVLLKEDFPQLKVIKLEQNYRS 278 (664)
T ss_pred hCCEEEEeehccCCHHHHHHHHHHhcCCCeEEEEcCCccccc-------CCCCCCHHHHHHHHHhCCCCeEEECCCCCCC
Confidence 56999999999999874433222 223468999999999210 0111222334444332 2345789999999
Q ss_pred ChhhhccCccccc
Q 035724 355 HPSISSFPNSYFY 367 (1939)
Q Consensus 355 hp~I~~f~S~~FY 367 (1939)
+|.|.++.+..|-
T Consensus 279 ~~~Il~~~n~l~~ 291 (664)
T TIGR01074 279 TGRILKAANILIA 291 (664)
T ss_pred hHHHHHHHHHHHh
Confidence 9999999998553
No 68
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.00 E-value=1.2e-05 Score=97.48 Aligned_cols=89 Identities=22% Similarity=0.410 Sum_probs=66.7
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccchhhHHhh--------hccCCcEEEEeCCcccchH--Hhhcccc
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASSSYKLHRV--------AMEQLKFLVIDEAAQLKEV--ESAIPLK 300 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~sss~~l~~l--------~~~~fdvVIIDEASQ~~E~--e~lipL~ 300 (1939)
+-.++||||||||||++..|....-....-+-+|+++...+... ..+.-.+++|||.+..... ++++|..
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v 128 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHV 128 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhh
Confidence 34599999999999999888765544445555666665444332 2245689999999999887 7888987
Q ss_pred CCCcceEEEEeccccCCccee
Q 035724 301 LPGIQHAILIGDECQLPAMVE 321 (1939)
Q Consensus 301 ~~~~~rlVLiGD~~QLpPvV~ 321 (1939)
.. ..++|||-...-|.+..
T Consensus 129 E~--G~iilIGATTENPsF~l 147 (436)
T COG2256 129 EN--GTIILIGATTENPSFEL 147 (436)
T ss_pred cC--CeEEEEeccCCCCCeee
Confidence 64 68999999999998753
No 69
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.98 E-value=1e-05 Score=94.98 Aligned_cols=109 Identities=18% Similarity=0.209 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhc----CCcEE------------EEc--------ccc
Q 035724 212 SQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFT----KASLI------------FCT--------ASS 267 (1939)
Q Consensus 212 sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~----~a~vI------------~~T--------~ss 267 (1939)
.|...|....++... ...+..|.+||||||||.|+.++.+.++- ..+|. +.+ ..+
T Consensus 40 gQe~vV~~L~~a~~~-~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~fakl~~~ 118 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLR-RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKNFAKLTVL 118 (346)
T ss_pred chHHHHHHHHHHHhh-cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcCHHHHhhc
Confidence 577777766665443 34678899999999999999888865543 11111 000 000
Q ss_pred hhhHHhhhccCCcEEEEeCCcccchHHhhcccc-----CCCcceEEEEe-ccccCCcceec
Q 035724 268 SYKLHRVAMEQLKFLVIDEAAQLKEVESAIPLK-----LPGIQHAILIG-DECQLPAMVES 322 (1939)
Q Consensus 268 s~~l~~l~~~~fdvVIIDEASQ~~E~e~lipL~-----~~~~~rlVLiG-D~~QLpPvV~s 322 (1939)
..+.......+|.++|+|||--++. +++..|. .+...++|||- +.--+|+.+.|
T Consensus 119 ~~~~~~~~~~~fKiiIlDEcdsmts-daq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 119 LKRSDGYPCPPFKIIILDECDSMTS-DAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred cccccCCCCCcceEEEEechhhhhH-HHHHHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 0011112335789999999986653 3444442 23567788775 44455555544
No 70
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.94 E-value=0.0021 Score=91.53 Aligned_cols=284 Identities=13% Similarity=0.038 Sum_probs=146.6
Q ss_pred cCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcc--h---HHHHHH-----h-hhH------------Hhh----hhhhc
Q 035724 1062 ASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSY--W---EGRSKA-----T-GLK------------ATA----DRCRS 1114 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~--~---~~l~kA-----~-~l~------------e~a----~~~~s 1114 (1939)
...++-|..+|..++.++++++|+.+|+++-... . ..|... + ... +.+ +....
T Consensus 300 P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~ 379 (1157)
T PRK11447 300 PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQ 379 (1157)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3467899999999999999999999999975311 0 111000 0 000 000 11111
Q ss_pred CCchHhHHHHHHHHHHHHHcCCHHHHHHHHHHhCC--------------------HHHHHHHHHHhc-------------
Q 035724 1115 SNPKQANVNLREAAKIFEAIGKADSAAKCFYNLGE--------------------YERAGRIYLERR------------- 1161 (1939)
Q Consensus 1115 ~~~~ea~~~y~eAA~lYe~~G~~~kAaecy~kag~--------------------~~~A~eLY~e~~------------- 1161 (1939)
.+|... ..+...+.+|...|++++|+++|.++-. +++|...+.+..
T Consensus 380 ~~P~~~-~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~ 458 (1157)
T PRK11447 380 VDNTDS-YAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERS 458 (1157)
T ss_pred hCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 222211 2344567777788888888777766431 222332222110
Q ss_pred -ChHHHHHHHHHHHHcCCHHHHHHHHHHccC--------HHHHHHHHHhcCChHHHHHHHHhhhhcccccccccccchhh
Q 035724 1162 -EEPELEKAGECFFLAGCYKLAADVYAKGKF--------FSECLAVCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGL 1232 (1939)
Q Consensus 1162 -~e~~~~qaAe~fE~~G~y~eAAelY~kagd--------~dkAI~my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l 1232 (1939)
....+...|+.+...|++.+|.++|.++-. .-....+|.+.+++++|+..+++..+..+.+
T Consensus 459 l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~---------- 528 (1157)
T PRK11447 459 LQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPND---------- 528 (1157)
T ss_pred hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----------
Confidence 011134457778888999999999988722 1233457788899999998888654422211
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcc--HHHHHHHHHh---hcCHHHHHHHHHhcCCHHHHHHHHH
Q 035724 1233 LVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRS--VDLMRKFLKS---LSCFDDLLVLEEESGNFMDAANIAR 1307 (1939)
Q Consensus 1233 ~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s--~eeA~~~L~k---~~~ldea~ell~e~G~feEAa~Lak 1307 (1939)
.......+..+.+.+++++|++.+..... |..+..-+.. ...+-..++.+...|++++|..+++
T Consensus 529 -----------~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~ 597 (1157)
T PRK11447 529 -----------PEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR 597 (1157)
T ss_pred -----------HHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 00001113445556666666665553321 1111100000 0111233455566666666666555
Q ss_pred HcC----CHHHHHHHHHHhCCHHHHHHHHHHHh-----hhhccccCCCCCCCCcchhhHHHHHHHHHhH
Q 035724 1308 LRG----DIFLAVDLLQKAGCFKEACNVTLNHV-----ISNSLWSPGSKGWPLKQFTKKKELLEKAKSL 1367 (1939)
Q Consensus 1308 ~~G----k~~eAi~my~kAG~~~eA~rva~~~~-----~~~~l~~~~~~~~~~~~~~~ae~ll~~A~~~ 1367 (1939)
.+. -...-+++|.+.|++++|...+.+-+ ..+.+.+-+..-...+++.+|++.+.++...
T Consensus 598 ~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 598 QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 431 11223455555666666655544332 1222333333333445566666666665543
No 71
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.92 E-value=0.00028 Score=88.19 Aligned_cols=189 Identities=16% Similarity=0.114 Sum_probs=114.6
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHh---------------------CCHHHHHHHHHHhcC-----hHHHHHHHHHH
Q 035724 1120 ANVNLREAAKIFEAIGKADSAAKCFYNL---------------------GEYERAGRIYLERRE-----EPELEKAGECF 1173 (1939)
Q Consensus 1120 a~~~y~eAA~lYe~~G~~~kAaecy~ka---------------------g~~~~A~eLY~e~~~-----e~~~~qaAe~f 1173 (1939)
....|...+..|.+++.+++|+.||.++ |..+-|++-|+++.+ ...+..-|..+
T Consensus 251 f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanAL 330 (966)
T KOG4626|consen 251 FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANAL 330 (966)
T ss_pred chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHH
Confidence 3445777888888888888888888875 455777888877532 13467779999
Q ss_pred HHcCCHHHHHHHHHHccC--------HHHHHHHHHhcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHH
Q 035724 1174 FLAGCYKLAADVYAKGKF--------FSECLAVCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQE 1245 (1939)
Q Consensus 1174 E~~G~y~eAAelY~kagd--------~dkAI~my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~ 1245 (1939)
...|.-.+|+.+|.++=. ......+|.+.+.+++|.++-.+- ++-.|..+-.|..+
T Consensus 331 kd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~a---l~v~p~~aaa~nNL------------- 394 (966)
T KOG4626|consen 331 KDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKA---LEVFPEFAAAHNNL------------- 394 (966)
T ss_pred HhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHH---HhhChhhhhhhhhH-------------
Confidence 999999999999998722 223344777888888888886631 11111111111111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhccHH----HHH----HHHHhhcCHHHHHHHHHhc----CCHHHH----HHHHHHc
Q 035724 1246 FLEKCAIHYYGLQDKKSMMKFVKSFRSVD----LMR----KFLKSLSCFDDLLVLEEES----GNFMDA----ANIARLR 1309 (1939)
Q Consensus 1246 ~le~aa~hy~kagD~k~A~~~~~~~~s~e----eA~----~~L~k~~~ldea~ell~e~----G~feEA----a~Lak~~ 1309 (1939)
+.-|...|..+.|+.+|+..=..+ +|. ..++..|+++++++.+.++ -.|.|| +.+++..
T Consensus 395 -----a~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDs 469 (966)
T KOG4626|consen 395 -----ASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDS 469 (966)
T ss_pred -----HHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhcc
Confidence 334666666666666655321111 111 1255667777777655442 234444 2355666
Q ss_pred CCHHHHHHHHHHh----CCHHHHH
Q 035724 1310 GDIFLAVDLLQKA----GCFKEAC 1329 (1939)
Q Consensus 1310 Gk~~eAi~my~kA----G~~~eA~ 1329 (1939)
|...+|++.|..| -|+.+|.
T Consensus 470 Gni~~AI~sY~~aLklkPDfpdA~ 493 (966)
T KOG4626|consen 470 GNIPEAIQSYRTALKLKPDFPDAY 493 (966)
T ss_pred CCcHHHHHHHHHHHccCCCCchhh
Confidence 8888888877653 3444543
No 72
>PRK11054 helD DNA helicase IV; Provisional
Probab=97.91 E-value=1.8e-05 Score=105.12 Aligned_cols=82 Identities=20% Similarity=0.278 Sum_probs=55.5
Q ss_pred CCcEEEEeCCcccchHHhhcc--ccC-CCcceEEEEeccccCCcceeccccccccccCCHHHHHHhc-C-Cccccccccc
Q 035724 278 QLKFLVIDEAAQLKEVESAIP--LKL-PGIQHAILIGDECQLPAMVESSVSGEACLGRSLFERLSNL-G-QAKHLLSIQY 352 (1939)
Q Consensus 278 ~fdvVIIDEASQ~~E~e~lip--L~~-~~~~rlVLiGD~~QLpPvV~s~~~~~~gl~~SLFeRL~~~-~-~~~~~L~~QY 352 (1939)
++++|+|||+..++..+.-+. +.. .+..++++|||+.|---- -.|-+.+++..+... + ...+.|+++|
T Consensus 430 ~~~~IlVDE~QD~s~~q~~ll~~l~~~~~~~~l~~VGD~~QsIY~-------frGa~~~~~~~f~~~f~~~~~~~L~~nY 502 (684)
T PRK11054 430 PWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYR-------FSGADLSLTTAFHERFGEGDRCHLDTTY 502 (684)
T ss_pred cccEEEEEccccCCHHHHHHHHHHhccCCCCeEEEEECCCccccc-------cCCCChHHHHHHHhhcCCCeEEEeCCCC
Confidence 489999999999987743332 221 234689999999994211 122334455544432 2 3467899999
Q ss_pred cCChhhhccCcccc
Q 035724 353 RMHPSISSFPNSYF 366 (1939)
Q Consensus 353 Rmhp~I~~f~S~~F 366 (1939)
|+++.|.++.|..+
T Consensus 503 Rs~~~I~~~An~~i 516 (684)
T PRK11054 503 RFNSRIGEVANRFI 516 (684)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999999643
No 73
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.88 E-value=0.003 Score=85.49 Aligned_cols=272 Identities=12% Similarity=0.018 Sum_probs=145.1
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHhCC-------cchHHHHHHhh---hHHhhhhh----hcCCchHhHHHHHHHHH
Q 035724 1064 SPEEWKSRGIKLFHEHNYDMATICFEKAKD-------SYWEGRSKATG---LKATADRC----RSSNPKQANVNLREAAK 1129 (1939)
Q Consensus 1064 tpeeW~~lG~~l~~q~~yd~A~kcF~rAgd-------~~~~~l~kA~~---l~e~a~~~----~s~~~~ea~~~y~eAA~ 1129 (1939)
+...|..+...+.+.+++++|...|.+... ..+..+..++. ....+..+ ...........|.-...
T Consensus 188 ~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~ 267 (697)
T PLN03081 188 NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALID 267 (697)
T ss_pred CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHH
Confidence 344688888888899999999999997522 11111111111 00111100 00000001112344556
Q ss_pred HHHHcCCHHHH------------------HHHHHHhCCHHHHHHHHHHhc------ChHHHHHHHHHHHHcCCHHHHHHH
Q 035724 1130 IFEAIGKADSA------------------AKCFYNLGEYERAGRIYLERR------EEPELEKAGECFFLAGCYKLAADV 1185 (1939)
Q Consensus 1130 lYe~~G~~~kA------------------aecy~kag~~~~A~eLY~e~~------~e~~~~qaAe~fE~~G~y~eAAel 1185 (1939)
.|.++|+.++| +..|.+.|++++|.++|.+.. +...+......+.+.|.+++|.++
T Consensus 268 ~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i 347 (697)
T PLN03081 268 MYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQA 347 (697)
T ss_pred HHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHH
Confidence 66666666665 444566788888888887631 112356667777778888888877
Q ss_pred HHHcc---------CHHHHHHHHHhcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHh
Q 035724 1186 YAKGK---------FFSECLAVCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYG 1256 (1939)
Q Consensus 1186 Y~kag---------d~dkAI~my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~k 1256 (1939)
+.... -+...|++|.+.|.+++|.++.++..+... .. +......|.+
T Consensus 348 ~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~----------~t--------------~n~lI~~y~~ 403 (697)
T PLN03081 348 HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL----------IS--------------WNALIAGYGN 403 (697)
T ss_pred HHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCe----------ee--------------HHHHHHHHHH
Confidence 76541 245567778888888877777764332100 00 0111223444
Q ss_pred cCCHHHHHHHHHH----------------------hccHHHHHHHHHhh----------cCHHHHHHHHHhcCCHHHHHH
Q 035724 1257 LQDKKSMMKFVKS----------------------FRSVDLMRKFLKSL----------SCFDDLLVLEEESGNFMDAAN 1304 (1939)
Q Consensus 1257 agD~k~A~~~~~~----------------------~~s~eeA~~~L~k~----------~~ldea~ell~e~G~feEAa~ 1304 (1939)
.|+.++|.+.+.. .+..++|.+++... ..+...++.+.+.|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 4444444433321 11222222222111 124456677778888888877
Q ss_pred HHHHcCC------HHHHHHHHHHhCCHHHHHHHHHHH------------hhhhccccCCCCCCCCcchhhHHHHHHHHHh
Q 035724 1305 IARLRGD------IFLAVDLLQKAGCFKEACNVTLNH------------VISNSLWSPGSKGWPLKQFTKKKELLEKAKS 1366 (1939)
Q Consensus 1305 Lak~~Gk------~~eAi~my~kAG~~~eA~rva~~~------------~~~~~l~~~~~~~~~~~~~~~ae~ll~~A~~ 1366 (1939)
+.+..+. +..-+..+.+.|+.+.|.+++++- ++++.+-. .+++.+|++++.+.++
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~-------~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNS-------SGRQAEAAKVVETLKR 556 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHh-------CCCHHHHHHHHHHHHH
Confidence 7766532 233356667778887777766542 12222222 2346778888777766
No 74
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.87 E-value=0.00079 Score=90.93 Aligned_cols=231 Identities=12% Similarity=0.067 Sum_probs=148.3
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHhCCc-------chHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHc--
Q 035724 1064 SPEEWKSRGIKLFHEHNYDMATICFEKAKDS-------YWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAI-- 1134 (1939)
Q Consensus 1064 tpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~-------~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~-- 1134 (1939)
+..-|-.+...+.+.|++++|...|.+.... .+..+..++. ..+.+.+|.+++..+
T Consensus 289 ~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~---------------~~g~~~~a~~i~~~m~~ 353 (697)
T PLN03081 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS---------------RLALLEHAKQAHAGLIR 353 (697)
T ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---------------hccchHHHHHHHHHHHH
Confidence 4457888899999999999999999875321 1111111111 111223333333321
Q ss_pred -C------CHHHHHHHHHHhCCHHHHHHHHHHhcCh--HHHHHHHHHHHHcCCHHHHHHHHHHccC---------HHHHH
Q 035724 1135 -G------KADSAAKCFYNLGEYERAGRIYLERREE--PELEKAGECFFLAGCYKLAADVYAKGKF---------FSECL 1196 (1939)
Q Consensus 1135 -G------~~~kAaecy~kag~~~~A~eLY~e~~~e--~~~~qaAe~fE~~G~y~eAAelY~kagd---------~dkAI 1196 (1939)
| -+.--+.+|.+.|++++|.+++.+.... ..|.-....|.+.|+.++|.++|.+... |.-.+
T Consensus 354 ~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll 433 (697)
T PLN03081 354 TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVL 433 (697)
T ss_pred hCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 2 1233466777777777777777663222 2277788899999999999999987532 67788
Q ss_pred HHHHhcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHH
Q 035724 1197 AVCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRSVDLM 1276 (1939)
Q Consensus 1197 ~my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s~eeA 1276 (1939)
..|.+.|..++|.++.+.-.+.....| ...........|.++|+.++|.+++......-.+
T Consensus 434 ~a~~~~g~~~~a~~~f~~m~~~~g~~p-------------------~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~ 494 (697)
T PLN03081 434 SACRYSGLSEQGWEIFQSMSENHRIKP-------------------RAMHYACMIELLGREGLLDEAYAMIRRAPFKPTV 494 (697)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCC-------------------CccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCH
Confidence 889999999999999875432111000 0001122355688899999888877654321111
Q ss_pred HHHHHhhcCHHHHHHHHHhcCCHHHHHHHHHHc--------CCHHHHHHHHHHhCCHHHHHHHHHHH
Q 035724 1277 RKFLKSLSCFDDLLVLEEESGNFMDAANIARLR--------GDIFLAVDLLQKAGCFKEACNVTLNH 1335 (1939)
Q Consensus 1277 ~~~L~k~~~ldea~ell~e~G~feEAa~Lak~~--------Gk~~eAi~my~kAG~~~eA~rva~~~ 1335 (1939)
..+..++..+...|+++.|..+++.. +.+..-+.+|.++|+|++|.++...-
T Consensus 495 -------~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m 554 (697)
T PLN03081 495 -------NMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETL 554 (697)
T ss_pred -------HHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHH
Confidence 12455667777888888887766642 56777899999999999999988643
No 75
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.83 E-value=0.00014 Score=96.64 Aligned_cols=97 Identities=23% Similarity=0.193 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhc-ChHHH----HHHHHHHHHcCCHHHHHHHHHH-ccCHH
Q 035724 1120 ANVNLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERR-EEPEL----EKAGECFFLAGCYKLAADVYAK-GKFFS 1193 (1939)
Q Consensus 1120 a~~~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~-~e~~~----~qaAe~fE~~G~y~eAAelY~k-agd~d 1193 (1939)
....|.+||-+|+.+|+.++|.++|..+|+|++|..+..+.. +...+ +.-+.-+-..+++.+|+++-.. ++++.
T Consensus 951 ~~~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~ 1030 (1265)
T KOG1920|consen 951 EELMSDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPE 1030 (1265)
T ss_pred HhccccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHH
Confidence 344688999999999999999999999999999999988742 12222 3344555667888888887655 69999
Q ss_pred HHHHHHHhcCChHHHHHHHHhhh
Q 035724 1194 ECLAVCSKGKLFEIGLQYMNHWK 1216 (1939)
Q Consensus 1194 kAI~my~k~k~fd~airLv~q~~ 1216 (1939)
.|+..|+++..|++|+|++..+.
T Consensus 1031 ~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1031 EAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHhhHhHHHHHHHHHHhcc
Confidence 99999999999999999998655
No 76
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=3.2e-05 Score=97.81 Aligned_cols=111 Identities=18% Similarity=0.232 Sum_probs=63.0
Q ss_pred HHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcC----------------------CcEEEEcccc---
Q 035724 213 QAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTK----------------------ASLIFCTASS--- 267 (1939)
Q Consensus 213 Q~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~----------------------a~vI~~T~ss--- 267 (1939)
|..++.........+..++..|++|||||||||++..+++.+... .+++-..+.+
T Consensus 23 Qe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas~~g 102 (484)
T PRK14956 23 QDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNRG 102 (484)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhhccc
Confidence 444444333322223334567999999999999999988654321 1222211111
Q ss_pred hhhHHhh--------hccCCcEEEEeCCcccchH--HhhccccCCCcceEEEE--e-ccccCCcceecc
Q 035724 268 SYKLHRV--------AMEQLKFLVIDEAAQLKEV--ESAIPLKLPGIQHAILI--G-DECQLPAMVESS 323 (1939)
Q Consensus 268 s~~l~~l--------~~~~fdvVIIDEASQ~~E~--e~lipL~~~~~~rlVLi--G-D~~QLpPvV~s~ 323 (1939)
......+ ....+.++|||||.+++.. ..++.....+..++++| . ++.+++|++.|.
T Consensus 103 Vd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SR 171 (484)
T PRK14956 103 IENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSR 171 (484)
T ss_pred HHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhh
Confidence 1111111 1246789999999999885 44444433333455544 3 557788887664
No 77
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.80 E-value=0.0016 Score=92.85 Aligned_cols=275 Identities=11% Similarity=0.028 Sum_probs=151.5
Q ss_pred CCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCc--chHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHH-------
Q 035724 1063 SSPEEWKSRGIKLFHEHNYDMATICFEKAKDS--YWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEA------- 1133 (1939)
Q Consensus 1063 StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~--~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~------- 1133 (1939)
..+..+..+|..+..++++++|+.+|+++-.. ............-.. .++ .+|..++.+
T Consensus 383 ~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~-----~~~-------~~A~~~l~~l~~~~~~ 450 (1157)
T PRK11447 383 TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQ-----QSP-------EKALAFIASLSASQRR 450 (1157)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-----cCH-------HHHHHHHHhCCHHHHH
Confidence 45667889999999999999999999998531 111111100000000 001 111111111
Q ss_pred ----------cCCHHHHHHHHHHhCCHHHHHHHHHHhcC-----hHHHHHHHHHHHHcCCHHHHHHHHHHccC-----HH
Q 035724 1134 ----------IGKADSAAKCFYNLGEYERAGRIYLERRE-----EPELEKAGECFFLAGCYKLAADVYAKGKF-----FS 1193 (1939)
Q Consensus 1134 ----------~G~~~kAaecy~kag~~~~A~eLY~e~~~-----e~~~~qaAe~fE~~G~y~eAAelY~kagd-----~d 1193 (1939)
...+..-++++...|++++|.+.|.+... ...+-..|..+...|++++|.+.|.++-. .+
T Consensus 451 ~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~ 530 (1157)
T PRK11447 451 SIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE 530 (1157)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 01111223455566666666666665421 12355678999999999999999988621 11
Q ss_pred H--H-HHHHHhcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHH-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 035724 1194 E--C-LAVCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIE-QEFLEKCAIHYYGLQDKKSMMKFVKS 1269 (1939)
Q Consensus 1194 k--A-I~my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie-~~~le~aa~hy~kagD~k~A~~~~~~ 1269 (1939)
. + ...+.+.+.+++|+..+++.+...... .+ .. ....+. +..++. +..+...|+.++|.++++.
T Consensus 531 ~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~--------~~-~~--l~~~l~~~~~l~~-a~~l~~~G~~~eA~~~l~~ 598 (1157)
T PRK11447 531 QVYAYGLYLSGSDRDRAALAHLNTLPRAQWNS--------NI-QE--LAQRLQSDQVLET-ANRLRDSGKEAEAEALLRQ 598 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCCchhcCh--------hH-HH--HHHHHhhhHHHHH-HHHHHHCCCHHHHHHHHHh
Confidence 1 1 123456788899998887543311100 00 00 001111 123333 6778899999999887773
Q ss_pred hccHHHHHHHHHhhcCHHHHHHHHHhcCCHHHHHHHHHHc-----CC---HHHHHHHHHHhCCHHHHHHHHHHHh-----
Q 035724 1270 FRSVDLMRKFLKSLSCFDDLLVLEEESGNFMDAANIARLR-----GD---IFLAVDLLQKAGCFKEACNVTLNHV----- 1336 (1939)
Q Consensus 1270 ~~s~eeA~~~L~k~~~ldea~ell~e~G~feEAa~Lak~~-----Gk---~~eAi~my~kAG~~~eA~rva~~~~----- 1336 (1939)
...-. ...-.+++++.+.|++++|...++.. +. ....+.+|...|++++|...+..-.
T Consensus 599 ~p~~~---------~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~ 669 (1157)
T PRK11447 599 QPPST---------RIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAND 669 (1157)
T ss_pred CCCCc---------hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC
Confidence 22111 11223456677778888887666532 11 1223566777788888876666321
Q ss_pred hhhccccCCCCCCCCcchhhHHHHHHHHHhHhhh
Q 035724 1337 ISNSLWSPGSKGWPLKQFTKKKELLEKAKSLAKN 1370 (1939)
Q Consensus 1337 ~~~~l~~~~~~~~~~~~~~~ae~ll~~A~~~~~~ 1370 (1939)
..+.+..-+......+++.+|.+++.+|...+..
T Consensus 670 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 703 (1157)
T PRK11447 670 SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKS 703 (1157)
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCcc
Confidence 1111111222223456789999999998876543
No 78
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.80 E-value=0.0029 Score=88.18 Aligned_cols=199 Identities=15% Similarity=0.078 Sum_probs=121.1
Q ss_pred HHHHHHhCCHHHHHHHHHHhc------ChHHHHHHHHHHHHcCCHHHHHHHHHHccC-----------HHHHHHHHHhcC
Q 035724 1141 AKCFYNLGEYERAGRIYLERR------EEPELEKAGECFFLAGCYKLAADVYAKGKF-----------FSECLAVCSKGK 1203 (1939)
Q Consensus 1141 aecy~kag~~~~A~eLY~e~~------~e~~~~qaAe~fE~~G~y~eAAelY~kagd-----------~dkAI~my~k~k 1203 (1939)
+..|.+.|++++|.++|.+.. +...|......+.+.|++++|.++|..... |...|.+|.+.+
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 556666677777777766531 112366777788888999999888876521 456777888899
Q ss_pred ChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHHhh
Q 035724 1204 LFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRSVDLMRKFLKSL 1283 (1939)
Q Consensus 1204 ~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s~eeA~~~L~k~ 1283 (1939)
++++|.++.+...+.-... ....+......|.+.|++++|++.+.......-.. ..
T Consensus 594 ~ldeA~elf~~M~e~gi~p--------------------~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P----D~ 649 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKG--------------------TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP----DE 649 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCC--------------------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----CH
Confidence 9998888887543311000 00112233556888888888887666433221000 01
Q ss_pred cCHHHHHHHHHhcCCHHHHHHHHHH---cCC------HHHHHHHHHHhCCHHHHHHHHHHHh---------hhhccccCC
Q 035724 1284 SCFDDLLVLEEESGNFMDAANIARL---RGD------IFLAVDLLQKAGCFKEACNVTLNHV---------ISNSLWSPG 1345 (1939)
Q Consensus 1284 ~~ldea~ell~e~G~feEAa~Lak~---~Gk------~~eAi~my~kAG~~~eA~rva~~~~---------~~~~l~~~~ 1345 (1939)
.-+..+++.+++.|++++|.++... .|. +..-+.+|.++|++++|.++...-. .-+.|+..
T Consensus 650 ~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~g- 728 (1060)
T PLN03218 650 VFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITA- 728 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-
Confidence 1244567788888999988776653 231 2445888999999999988876431 00111111
Q ss_pred CCCCCCcchhhHHHHHHHHHh
Q 035724 1346 SKGWPLKQFTKKKELLEKAKS 1366 (1939)
Q Consensus 1346 ~~~~~~~~~~~ae~ll~~A~~ 1366 (1939)
.-..+++.+|+++|.+.++
T Consensus 729 --y~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 729 --LCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred --HHHCCCHHHHHHHHHHHHH
Confidence 1123567888888887665
No 79
>PF13245 AAA_19: Part of AAA domain
Probab=97.76 E-value=3.8e-05 Score=74.34 Aligned_cols=47 Identities=26% Similarity=0.411 Sum_probs=35.4
Q ss_pred HHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhc-----CCcEEEEcccch
Q 035724 216 AVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFT-----KASLIFCTASSS 268 (1939)
Q Consensus 216 AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~-----~a~vI~~T~sss 268 (1939)
||..++. .+++.+|+||||||||+|+..++..+.. ..+|++.+.+..
T Consensus 2 av~~al~------~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~ 53 (76)
T PF13245_consen 2 AVRRALA------GSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRA 53 (76)
T ss_pred HHHHHHh------hCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHH
Confidence 6666665 1578899999999999999998877664 456777665543
No 80
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.72 E-value=0.0084 Score=82.00 Aligned_cols=204 Identities=15% Similarity=0.066 Sum_probs=110.9
Q ss_pred HHHHHhcCCHHHHHHHHHHhccHHHHHHHHHhhcCHHHHHHHHHhcCCHHHHHHHHHHc--CC-----------------
Q 035724 1251 AIHYYGLQDKKSMMKFVKSFRSVDLMRKFLKSLSCFDDLLVLEEESGNFMDAANIARLR--GD----------------- 1311 (1939)
Q Consensus 1251 a~hy~kagD~k~A~~~~~~~~s~eeA~~~L~k~~~ldea~ell~e~G~feEAa~Lak~~--Gk----------------- 1311 (1939)
+..|...|++++|.+.+...-..+.... -........+...+.+.|++++|..++... ..
T Consensus 279 a~~yl~~g~~e~A~~~l~~~l~~~p~~~-~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~ 357 (765)
T PRK10049 279 ASAYLKLHQPEKAQSILTELFYHPETIA-DLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDD 357 (765)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhcCCCCC-CCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCch
Confidence 4567777777777766553211110000 000001122233557888999887765432 11
Q ss_pred H----HHHHHHHHHhCCHHHHHHHHHHHh-----hhhccccCCCCCCCCcchhhHHHHHHHHHhHhhhhhHHHHHHHhhh
Q 035724 1312 I----FLAVDLLQKAGCFKEACNVTLNHV-----ISNSLWSPGSKGWPLKQFTKKKELLEKAKSLAKNESNQFYEFVCTE 1382 (1939)
Q Consensus 1312 ~----~eAi~my~kAG~~~eA~rva~~~~-----~~~~l~~~~~~~~~~~~~~~ae~ll~~A~~~~~~~s~~~~~~~~~e 1382 (1939)
. ...+.++...|++++|..++.+-. -...+...|...-..+++.+|++++.+|..+.=.-..-.+..++.
T Consensus 358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~- 436 (765)
T PRK10049 358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWT- 436 (765)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH-
Confidence 1 234667888999999998887653 344455555555556778999999999999654444433333332
Q ss_pred hhccccCCCCHHHHHHHHhhhcccCccccchhhhHHHhhhccccccccceecccccccchhhHh-Hhhccccccceeee-
Q 035724 1383 ADILSNDQSDLSIINQQLNASTRHQSISGETLSVRQILDFHLKTDSSKYVWGDELVLDLTYSEE-IICKNRVSVQSLVY- 1460 (1939)
Q Consensus 1383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~- 1460 (1939)
-.-.++-.-.-.+...+.+ -..-...+..+.+.+|+|=.. ...+...... ++.+ ....|-.+.+|-+|
T Consensus 437 -al~~~~~~~A~~~~~~ll~---~~Pd~~~~~~~~~~~~~~~~~---~l~~~~~~~~---~~~~~~~~~~~~~~~~~~ys 506 (765)
T PRK10049 437 -ALDLQEWRQMDVLTDDVVA---REPQDPGVQRLARARDVHHMA---ELRIAGSTGL---DSDGPDSGKHDVDITTILYS 506 (765)
T ss_pred -HHHhCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHhccCc---eEEEEecccC---CCCCCccccCcCcceeEEec
Confidence 2112222212222333333 223344667888889888432 2223322211 2222 13558899999999
Q ss_pred --ehhhhh
Q 035724 1461 --FWDCWK 1466 (1939)
Q Consensus 1461 --~~~~~~ 1466 (1939)
+++.|.
T Consensus 507 ~~~~~~~r 514 (765)
T PRK10049 507 PPLADNWR 514 (765)
T ss_pred CccCCCee
Confidence 567775
No 81
>COG0507 RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair]
Probab=97.71 E-value=7e-05 Score=100.90 Aligned_cols=110 Identities=24% Similarity=0.307 Sum_probs=80.2
Q ss_pred CCCCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcCCc-EEEEcccc-------------hhh
Q 035724 205 LSSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTKAS-LIFCTASS-------------SYK 270 (1939)
Q Consensus 205 ~~~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~a~-vI~~T~ss-------------s~~ 270 (1939)
....++++|..|+..++. +++.++.||||||||+++..+++....... +..++.++ +..
T Consensus 316 ~~~~~~~~q~~a~~vl~~-------de~smlt~~~~~~~~~~~~~~~~l~~~~~~~~l~aa~tG~a~~~l~e~tg~~a~t 388 (696)
T COG0507 316 VKLRLSLEQKEALDVLVV-------DEVSMLTGGPGTGKTTAIKAIARLIKEGDGDQLLAAPTGKAAKRLNESTGLEART 388 (696)
T ss_pred cCCCcCcccHHHHHHHhc-------CCeeEEeccCCcchHHHHHHHHHHHHhcCCcEEeechhhHHHHHHHHhhCcchhH
Confidence 346789999999999998 689999999999999999999876655443 33332221 222
Q ss_pred HHhh---hc--------cCCcEEEEeCCcccchHHhhcc-ccCCCcceEEEEeccccCCccee
Q 035724 271 LHRV---AM--------EQLKFLVIDEAAQLKEVESAIP-LKLPGIQHAILIGDECQLPAMVE 321 (1939)
Q Consensus 271 l~~l---~~--------~~fdvVIIDEASQ~~E~e~lip-L~~~~~~rlVLiGD~~QLpPvV~ 321 (1939)
.++. .. ...|++||||++|+........ ...+...++|++||..||||+..
T Consensus 389 i~~~~~~~~~~~~~~~~~~~d~~iiDe~~ml~~~~~~~l~~~i~~~a~~i~vGD~~ql~~v~~ 451 (696)
T COG0507 389 IHRLLGLWEKTGNNEEPLDGDLLIIDEASMLDTSLAFGLLSAIGKLAKVILVGDVDQLPSVGA 451 (696)
T ss_pred HHHHHhccccCCCCCCccccceeEEehhhhHHHHHhhhhhcccccCCeEEEeCCHHhcCCCCC
Confidence 2221 12 2348999999999998543333 23446789999999999999873
No 82
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.71 E-value=0.0056 Score=76.21 Aligned_cols=144 Identities=10% Similarity=-0.041 Sum_probs=72.3
Q ss_pred CCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcch---HHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCC---
Q 035724 1063 SSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYW---EGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGK--- 1136 (1939)
Q Consensus 1063 StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~---~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~--- 1136 (1939)
.+++-|..+|..++.+++++.|+..|.++-.... ......+.. .+. .....+.+.+|.+.|.++-.
T Consensus 67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~--La~------~~~~~g~~~~A~~~~~~~l~~~~ 138 (389)
T PRK11788 67 ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQE--LGQ------DYLKAGLLDRAEELFLQLVDEGD 138 (389)
T ss_pred ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHH------HHHHCCCHHHHHHHHHHHHcCCc
Confidence 4566788999999999999999999987643110 000000000 000 00011223333333333211
Q ss_pred -----HHHHHHHHHHhCCHHHHHHHHHHhcCh----------HHHHHHHHHHHHcCCHHHHHHHHHHccCH--------H
Q 035724 1137 -----ADSAAKCFYNLGEYERAGRIYLERREE----------PELEKAGECFFLAGCYKLAADVYAKGKFF--------S 1193 (1939)
Q Consensus 1137 -----~~kAaecy~kag~~~~A~eLY~e~~~e----------~~~~qaAe~fE~~G~y~eAAelY~kagd~--------d 1193 (1939)
+..-+.+|.+.|++++|.+++.+.... ..+...|..+.+.|++++|.++|.++-.. -
T Consensus 139 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 218 (389)
T PRK11788 139 FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASI 218 (389)
T ss_pred chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHH
Confidence 011134455556666666665543110 01234455666677777777777665221 1
Q ss_pred HHHHHHHhcCChHHHHHHHHh
Q 035724 1194 ECLAVCSKGKLFEIGLQYMNH 1214 (1939)
Q Consensus 1194 kAI~my~k~k~fd~airLv~q 1214 (1939)
....++.+.+++++|+.+.++
T Consensus 219 ~la~~~~~~g~~~~A~~~~~~ 239 (389)
T PRK11788 219 LLGDLALAQGDYAAAIEALER 239 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHH
Confidence 223455566666666666653
No 83
>PRK08181 transposase; Validated
Probab=97.71 E-value=8.9e-05 Score=88.36 Aligned_cols=146 Identities=14% Similarity=0.185 Sum_probs=83.2
Q ss_pred CCCCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHh-cCCcEEEEcccchhhHH----------h
Q 035724 205 LSSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCF-TKASLIFCTASSSYKLH----------R 273 (1939)
Q Consensus 205 ~~~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l-~~a~vI~~T~sss~~l~----------~ 273 (1939)
..+.++..|..++..+-.-.. . ..-.+|+||||||||+++.++...+. +...|++.+........ .
T Consensus 84 ~~~~~~~~~~~~L~~~~~~~~--~-~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~ 160 (269)
T PRK08181 84 AVPMVSKAQVMAIAAGDSWLA--K-GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLES 160 (269)
T ss_pred CCCCCCHHHHHHHHHHHHHHh--c-CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHH
Confidence 346789999999877632211 1 23369999999999999999986554 45677776643211100 0
Q ss_pred --hhccCCcEEEEeCCcccchHH----hhcccc--CCCcceEEEEeccccCCcceeccccccccccCCHHHHHHhcCCcc
Q 035724 274 --VAMEQLKFLVIDEAAQLKEVE----SAIPLK--LPGIQHAILIGDECQLPAMVESSVSGEACLGRSLFERLSNLGQAK 345 (1939)
Q Consensus 274 --l~~~~fdvVIIDEASQ~~E~e----~lipL~--~~~~~rlVLiGD~~QLpPvV~s~~~~~~gl~~SLFeRL~~~~~~~ 345 (1939)
......|+|||||.+...... .+.-+. ....+.+|+.+. +||---.......-+...+++||+......
T Consensus 161 ~l~~l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN---~~~~~w~~~~~D~~~a~aildRL~h~~~~i 237 (269)
T PRK08181 161 AIAKLDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITAN---QPFGEWNRVFPDPAMTLAAVDRLVHHATIF 237 (269)
T ss_pred HHHHHhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcC---CCHHHHHHhcCCccchhhHHHhhhcCceEE
Confidence 123568999999998764432 222221 111234555442 333211111122234567889998755444
Q ss_pred ccccccccCCh
Q 035724 346 HLLSIQYRMHP 356 (1939)
Q Consensus 346 ~~L~~QYRmhp 356 (1939)
.+=-..||+..
T Consensus 238 ~~~g~s~R~~~ 248 (269)
T PRK08181 238 EMNVESYRRRT 248 (269)
T ss_pred ecCCccchhHH
Confidence 44456677643
No 84
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.70 E-value=0.0032 Score=87.76 Aligned_cols=29 Identities=3% Similarity=-0.187 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHHHHhhCHHHHHHHHHHh
Q 035724 1063 SSPEEWKSRGIKLFHEHNYDMATICFEKA 1091 (1939)
Q Consensus 1063 StpeeW~~lG~~l~~q~~yd~A~kcF~rA 1091 (1939)
.+..-|-.+...+.+.++++.|..+|.+.
T Consensus 505 PdvvTynaLI~gy~k~G~~eeAl~lf~~M 533 (1060)
T PLN03218 505 ANVHTFGALIDGCARAGQVAKAFGAYGIM 533 (1060)
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 44557777777777778888888888764
No 85
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.68 E-value=6.2e-05 Score=97.21 Aligned_cols=106 Identities=24% Similarity=0.240 Sum_probs=63.0
Q ss_pred HHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcC----------------------CcEEEEcccchh---
Q 035724 215 QAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTK----------------------ASLIFCTASSSY--- 269 (1939)
Q Consensus 215 ~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~----------------------a~vI~~T~sss~--- 269 (1939)
+++..++. .+..++..|++||||||||+++..+++.+.-. .+++...+++..
T Consensus 26 ~~L~~~~~---~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~~v~ 102 (509)
T PRK14958 26 RALSNALD---QQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVE 102 (509)
T ss_pred HHHHHHHH---hCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccccCCHH
Confidence 34444444 23446677999999999999999888544311 123333222111
Q ss_pred hHHhh--------hccCCcEEEEeCCcccchH--HhhccccC--CCcceEEEE-eccccCCcceecc
Q 035724 270 KLHRV--------AMEQLKFLVIDEAAQLKEV--ESAIPLKL--PGIQHAILI-GDECQLPAMVESS 323 (1939)
Q Consensus 270 ~l~~l--------~~~~fdvVIIDEASQ~~E~--e~lipL~~--~~~~rlVLi-GD~~QLpPvV~s~ 323 (1939)
....+ ...++.++|||||.+++.. ..++.... ++..++||+ .|+..+||++.|.
T Consensus 103 ~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SR 169 (509)
T PRK14958 103 DTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSR 169 (509)
T ss_pred HHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHH
Confidence 11111 1257899999999999875 33333322 234455555 5888888887553
No 86
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.67 E-value=0.0029 Score=83.04 Aligned_cols=127 Identities=17% Similarity=0.176 Sum_probs=86.4
Q ss_pred cCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHH
Q 035724 1062 ASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAA 1141 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAa 1141 (1939)
.++++.|...|+...+++++++|+-||.||=.. +|.. ...+.+-+.+|.+.|+..+|+
T Consensus 204 p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~---------------------~p~n-~~~~~ers~L~~~~G~~~~Am 261 (895)
T KOG2076|consen 204 PKDYELWKRLADLSEQLGNINQARYCYSRAIQA---------------------NPSN-WELIYERSSLYQKTGDLKRAM 261 (895)
T ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhc---------------------CCcc-hHHHHHHHHHHHHhChHHHHH
Confidence 567799999999999999999999999987321 2332 345567889999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHc----------cCHHHHHHHHHhcCChHHHHHH
Q 035724 1142 KCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKG----------KFFSECLAVCSKGKLFEIGLQY 1211 (1939)
Q Consensus 1142 ecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~ka----------gd~dkAI~my~k~k~fd~airL 1211 (1939)
++|.++-++.--+++=.- ...+...|.+|-..++-..|++....+ .+++-.++++.+.+.|+.+.+.
T Consensus 262 ~~f~~l~~~~p~~d~er~---~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~ 338 (895)
T KOG2076|consen 262 ETFLQLLQLDPPVDIERI---EDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMK 338 (895)
T ss_pred HHHHHHHhhCCchhHHHH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHH
Confidence 999887544221111000 112445566666666666666554433 3456677777777777777777
Q ss_pred HH
Q 035724 1212 MN 1213 (1939)
Q Consensus 1212 v~ 1213 (1939)
+.
T Consensus 339 i~ 340 (895)
T KOG2076|consen 339 IV 340 (895)
T ss_pred HH
Confidence 66
No 87
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.66 E-value=6.3e-05 Score=86.23 Aligned_cols=81 Identities=25% Similarity=0.345 Sum_probs=48.2
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcc-cchhhHHh--hhccCCcEEEEeCCcccchH--HhhccccCCCcc
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTA-SSSYKLHR--VAMEQLKFLVIDEAAQLKEV--ESAIPLKLPGIQ 305 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~-sss~~l~~--l~~~~fdvVIIDEASQ~~E~--e~lipL~~~~~~ 305 (1939)
+-.++|||||+||||++..+.+.+-.+...+.++. .....+.. .....-++++|||.+.++.. +.+.|.... .
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd--~ 128 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAILTNLKEGDILFIDEIHRLNKAQQEILLPAMED--G 128 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHHHHT--TT-EEEECTCCC--HHHHHHHHHHHHC--S
T ss_pred ceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHHHHhcCCCcEEEEechhhccHHHHHHHHHHhcc--C
Confidence 44699999999999999888776654444333322 11222221 13356789999999999887 777787652 3
Q ss_pred eE-EEEecc
Q 035724 306 HA-ILIGDE 313 (1939)
Q Consensus 306 rl-VLiGD~ 313 (1939)
++ |++|..
T Consensus 129 ~idiiiG~g 137 (233)
T PF05496_consen 129 KIDIIIGKG 137 (233)
T ss_dssp EEEEEBSSS
T ss_pred eEEEEeccc
Confidence 44 677753
No 88
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.66 E-value=9.5e-05 Score=93.22 Aligned_cols=79 Identities=16% Similarity=0.151 Sum_probs=55.0
Q ss_pred EEEEEcChhHHHHHhhhhCC---ceEEEEeecccCCCCCEEEEeccCCCCCccccccCCCCCCCCCChhHhhhhhHHHHh
Q 035724 933 QVILVRDDCVRKEISNYVGK---QALVLTIVESKGLEFQVIHYTSQCCNSPFKHALFDSTSPGSFPSFNEAKHNVLCSEL 1009 (1939)
Q Consensus 933 q~IlVr~~~~k~~i~~~l~~---~~lVmTihesKGLEF~~Vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~El 1009 (1939)
.|||.+=..+..-++...-. ..=|.|+-.-.|=|+|+||+-- .++. +.... .-..|-
T Consensus 527 IaVIsPY~aQv~llR~~~~~~~~~veV~TVD~fQGrEkdvVIfsm-VRSN--------~k~ev-----------GFL~e~ 586 (649)
T KOG1803|consen 527 IAVISPYNAQVSLLREEDEEDFRDVEVGTVDGFQGREKDVVIFSL-VRSN--------DKGEV-----------GFLGET 586 (649)
T ss_pred eEEeccchHHHHHHhhcccccCccceeecccccccceeeEEEEEE-Eeec--------Ccccc-----------cccCCc
Confidence 48999999998888833211 1238999999999999999842 2220 00000 112366
Q ss_pred hhheeeeccccceEEEeccccc
Q 035724 1010 KQLYVAITRTRQRLWIWENMEE 1031 (1939)
Q Consensus 1010 k~LYVA~TRAr~~L~I~d~~~~ 1031 (1939)
|-|=||+||||+++.++-+...
T Consensus 587 RRLNVAiTRaRRh~~vIgds~t 608 (649)
T KOG1803|consen 587 RRLNVAITRARRHFVVIGDSRT 608 (649)
T ss_pred ceeeEEEEeccceEEEEcCcHH
Confidence 7789999999999988887654
No 89
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.65 E-value=0.0089 Score=80.33 Aligned_cols=104 Identities=14% Similarity=0.016 Sum_probs=50.1
Q ss_pred HHHHHhcCCHHHHHHHHHHhccHHHHHHHHHhhcCHHHHHHHHHhcCCHHHHHHHHHHc----CCH----HHHHHHHHHh
Q 035724 1251 AIHYYGLQDKKSMMKFVKSFRSVDLMRKFLKSLSCFDDLLVLEEESGNFMDAANIARLR----GDI----FLAVDLLQKA 1322 (1939)
Q Consensus 1251 a~hy~kagD~k~A~~~~~~~~s~eeA~~~L~k~~~ldea~ell~e~G~feEAa~Lak~~----Gk~----~eAi~my~kA 1322 (1939)
+..+.+.|++++|+..++..-..+-. .-.....+...+...|++++|...++.. ... ..++.+|...
T Consensus 291 g~~l~~~g~~~eA~~~l~~al~l~P~-----~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~ 365 (656)
T PRK15174 291 ADALIRTGQNEKAIPLLQQSLATHPD-----LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQA 365 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHC
Confidence 45566667766666655421111000 0000111234556667777776554432 111 1134456667
Q ss_pred CCHHHHHHHHHHHhh--hhccccCCCCCCCCcchhhHHHHHHHHHhHh
Q 035724 1323 GCFKEACNVTLNHVI--SNSLWSPGSKGWPLKQFTKKKELLEKAKSLA 1368 (1939)
Q Consensus 1323 G~~~eA~rva~~~~~--~~~l~~~~~~~~~~~~~~~ae~ll~~A~~~~ 1368 (1939)
|++++|...+.+..- ++.+ +++|.+|..-+.+|...+
T Consensus 366 G~~deA~~~l~~al~~~P~~~---------~~~~~ea~~~~~~~~~~~ 404 (656)
T PRK15174 366 GKTSEAESVFEHYIQARASHL---------PQSFEEGLLALDGQISAV 404 (656)
T ss_pred CCHHHHHHHHHHHHHhChhhc---------hhhHHHHHHHHHHHHHhc
Confidence 777777766665431 1111 344666666666666543
No 90
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.64 E-value=7.4e-05 Score=96.66 Aligned_cols=106 Identities=23% Similarity=0.235 Sum_probs=64.2
Q ss_pred HHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcC---------------------------CcEEEEcccc
Q 035724 215 QAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTK---------------------------ASLIFCTASS 267 (1939)
Q Consensus 215 ~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~---------------------------a~vI~~T~ss 267 (1939)
+.+..++. .+..++..|++|||||||||++..+.+.+.-. .+++.....+
T Consensus 26 ~~L~~al~---~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas 102 (700)
T PRK12323 26 RALTHALE---QQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAAS 102 (700)
T ss_pred HHHHHHHH---hCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEecccc
Confidence 34444444 34456778999999999999999988665431 1222222111
Q ss_pred ---hhhHHhh--------hccCCcEEEEeCCcccchH--HhhccccC--CCcceEEEEe-ccccCCcceecc
Q 035724 268 ---SYKLHRV--------AMEQLKFLVIDEAAQLKEV--ESAIPLKL--PGIQHAILIG-DECQLPAMVESS 323 (1939)
Q Consensus 268 ---s~~l~~l--------~~~~fdvVIIDEASQ~~E~--e~lipL~~--~~~~rlVLiG-D~~QLpPvV~s~ 323 (1939)
.-....+ ...++.++||||+.+++.. ..++-... ++...+||+. |..+|+|+|.|.
T Consensus 103 ~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSR 174 (700)
T PRK12323 103 NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSR 174 (700)
T ss_pred cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHH
Confidence 1111111 1356899999999999875 33333322 2345667776 677888888664
No 91
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.64 E-value=0.0001 Score=88.80 Aligned_cols=66 Identities=26% Similarity=0.305 Sum_probs=51.9
Q ss_pred cCHHHHhhhcc-CCcEEEecCCCChHHHHHHHHHHHHhHhhhhhhcccccCCCccccccccccCccCCCCcccccceeEE
Q 035724 719 VTDEQLEMILF-PKSSFILGRSGTGKTTILTMKLFQKEKLHHMAMDGFYGVNNSVTLHSSWESGAEEGLGETERPILRQL 797 (1939)
Q Consensus 719 l~~ee~~iI~~-p~~~~vlGrSGTGKTT~~L~kl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~qv 797 (1939)
|||||.++|++ .+|++|.|++||||||+++.|+..+ +..+- ...-+-+
T Consensus 1 l~~eQ~~~i~~~~~~~lV~a~AGSGKT~~l~~ri~~l------l~~~~-------------------------~~~~~Il 49 (315)
T PF00580_consen 1 LTDEQRRIIRSTEGPLLVNAGAGSGKTTTLLERIAYL------LYEGG-------------------------VPPERIL 49 (315)
T ss_dssp S-HHHHHHHHS-SSEEEEEE-TTSSHHHHHHHHHHHH------HHTSS-------------------------STGGGEE
T ss_pred CCHHHHHHHhCCCCCEEEEeCCCCCchHHHHHHHHHh------hcccc-------------------------CChHHhe
Confidence 68999999998 8899999999999999999998877 21110 0112389
Q ss_pred EEecCHHHHHHHHHHHHH
Q 035724 798 FVTVSPKLCFAVKQHISQ 815 (1939)
Q Consensus 798 fVT~S~~L~~~vk~~~~~ 815 (1939)
.+|.+...|.+.++.+..
T Consensus 50 ~lTft~~aa~e~~~ri~~ 67 (315)
T PF00580_consen 50 VLTFTNAAAQEMRERIRE 67 (315)
T ss_dssp EEESSHHHHHHHHHHHHH
T ss_pred ecccCHHHHHHHHHHHHH
Confidence 999999999999888777
No 92
>PRK06526 transposase; Provisional
Probab=97.61 E-value=6.5e-05 Score=88.93 Aligned_cols=146 Identities=19% Similarity=0.201 Sum_probs=78.4
Q ss_pred CCCCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHh-cCCcEEEEcccchhh----------H--
Q 035724 205 LSSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCF-TKASLIFCTASSSYK----------L-- 271 (1939)
Q Consensus 205 ~~~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l-~~a~vI~~T~sss~~----------l-- 271 (1939)
..+.++..|...+..+- .... ..-.+|+||||||||+++..+...+. .+.+|++.|...-.. .
T Consensus 77 ~~~~~~~~~~~~l~~~~---fi~~-~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~ 152 (254)
T PRK06526 77 HQRSLKRDTIAHLGTLD---FVTG-KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQA 152 (254)
T ss_pred cCCCcchHHHHHHhcCc---hhhc-CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHH
Confidence 34567777665543221 1112 23469999999999999999885443 455665554331110 0
Q ss_pred HhhhccCCcEEEEeCCcccchH----Hhhcccc--CCCcceEEEEeccccCCcceeccccccccccCCHHHHHHhcCCcc
Q 035724 272 HRVAMEQLKFLVIDEAAQLKEV----ESAIPLK--LPGIQHAILIGDECQLPAMVESSVSGEACLGRSLFERLSNLGQAK 345 (1939)
Q Consensus 272 ~~l~~~~fdvVIIDEASQ~~E~----e~lipL~--~~~~~rlVLiGD~~QLpPvV~s~~~~~~gl~~SLFeRL~~~~~~~ 345 (1939)
.......+|+|||||.+..... +.+.-+. ......+|+.+ ++||.--.......-+...+++||.......
T Consensus 153 ~l~~l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitS---n~~~~~w~~~~~d~~~a~ai~dRl~~~~~~i 229 (254)
T PRK06526 153 ELVKLGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTS---NKPFGRWGEVFGDDVVAAAMIDRLVHHAEVI 229 (254)
T ss_pred HHHHhccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEc---CCCHHHHHHHcCChHHHHHHHHHHhcCceEE
Confidence 0012356899999999987421 1222221 11122344432 2333211111111123446789998876666
Q ss_pred ccccccccCChh
Q 035724 346 HLLSIQYRMHPS 357 (1939)
Q Consensus 346 ~~L~~QYRmhp~ 357 (1939)
.+-...||....
T Consensus 230 ~~~g~s~R~~~~ 241 (254)
T PRK06526 230 SLKGDSYRLKDR 241 (254)
T ss_pred eecCCCcchhhh
Confidence 666788987654
No 93
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.58 E-value=0.0012 Score=75.00 Aligned_cols=166 Identities=19% Similarity=0.171 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCC-------HHHHHHHHHHc------
Q 035724 1123 NLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGC-------YKLAADVYAKG------ 1189 (1939)
Q Consensus 1123 ~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~-------y~eAAelY~ka------ 1189 (1939)
.|.+|+++|++ |+.+|.-+++|..|+.-| .++|++..+.|. |-+|..+|.++
T Consensus 29 k~eeAadl~~~------Aan~yklaK~w~~AG~af---------lkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv 93 (288)
T KOG1586|consen 29 KYEEAAELYER------AANMYKLAKNWSAAGDAF---------LKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAV 93 (288)
T ss_pred chHHHHHHHHH------HHHHHHHHHhHHHHHHHH---------HHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHH
Confidence 46677776654 344555556666655553 345555555554 45555555554
Q ss_pred cCHHHHHHHHHhcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 035724 1190 KFFSECLAVCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKS 1269 (1939)
Q Consensus 1190 gd~dkAI~my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~ 1269 (1939)
+..++||++|...|+|..|.+.=-. ..+.++.+-.-+++|..||..++||-.--+
T Consensus 94 ~cL~~aieIyt~~Grf~~aAk~~~~---------------------iaEiyEsdl~d~ekaI~~YE~Aae~yk~ee---- 148 (288)
T KOG1586|consen 94 NCLEKAIEIYTDMGRFTMAAKHHIE---------------------IAEIYESDLQDFEKAIAHYEQAAEYYKGEE---- 148 (288)
T ss_pred HHHHHHHHHHHhhhHHHHHHhhhhh---------------------HHHHHhhhHHHHHHHHHHHHHHHHHHcchh----
Confidence 2345666667676666644432111 112222222235666777777775432221
Q ss_pred hccHHHHHHHHHhhcCHHHHHHHHHhcCCHHHHHHHHHHc---------------CCHHHHHHHHHHhCCHHHHHHHHHH
Q 035724 1270 FRSVDLMRKFLKSLSCFDDLLVLEEESGNFMDAANIARLR---------------GDIFLAVDLLQKAGCFKEACNVTLN 1334 (1939)
Q Consensus 1270 ~~s~eeA~~~L~k~~~ldea~ell~e~G~feEAa~Lak~~---------------Gk~~eAi~my~kAG~~~eA~rva~~ 1334 (1939)
+.. ..+.++-.++++....++|..|..++++- |-+..|.-.+.-+++.-.|.+.+++
T Consensus 149 --s~s------sANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALek 220 (288)
T KOG1586|consen 149 --SVS------SANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEK 220 (288)
T ss_pred --hhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHH
Confidence 111 11344445566666667777776665432 5556677776667888888888888
Q ss_pred Hh
Q 035724 1335 HV 1336 (1939)
Q Consensus 1335 ~~ 1336 (1939)
|.
T Consensus 221 y~ 222 (288)
T KOG1586|consen 221 YQ 222 (288)
T ss_pred HH
Confidence 85
No 94
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.57 E-value=0.00011 Score=97.86 Aligned_cols=95 Identities=21% Similarity=0.201 Sum_probs=56.5
Q ss_pred CCCcEEEEeCCCCCchhHHHHHHHHHHhcC----------------------CcEEEEccc---chhhHHhh--------
Q 035724 228 HKATVELIWGPPGTGKTKTVSMLLDFCFTK----------------------ASLIFCTAS---SSYKLHRV-------- 274 (1939)
Q Consensus 228 ~~~~v~LI~GPPGTGKTtti~~li~~~l~~----------------------a~vI~~T~s---ss~~l~~l-------- 274 (1939)
..++..|++|||||||||++..+++.+... .+++..... +.-....+
T Consensus 36 rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P 115 (944)
T PRK14949 36 RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRP 115 (944)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhh
Confidence 446677999999999999999998665432 112211111 11111111
Q ss_pred hccCCcEEEEeCCcccchH--HhhccccCCCcc--eEEEEe-ccccCCcceec
Q 035724 275 AMEQLKFLVIDEAAQLKEV--ESAIPLKLPGIQ--HAILIG-DECQLPAMVES 322 (1939)
Q Consensus 275 ~~~~fdvVIIDEASQ~~E~--e~lipL~~~~~~--rlVLiG-D~~QLpPvV~s 322 (1939)
...++.++|||||.+++.. ..++.....+.. ++|++- |...|+|++.|
T Consensus 116 ~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlS 168 (944)
T PRK14949 116 SRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLS 168 (944)
T ss_pred hcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHH
Confidence 1256899999999999875 455555433233 344432 55667777655
No 95
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.56 E-value=0.00018 Score=85.96 Aligned_cols=210 Identities=17% Similarity=0.131 Sum_probs=76.8
Q ss_pred cCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHc-------
Q 035724 1062 ASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAI------- 1134 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~------- 1134 (1939)
.+.++-|+.+|..+...++++.|+.+|++.=...... ...+. ... .. ...+.+.+|++++++.
T Consensus 41 ~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~-~~~~~------~l~--~l-~~~~~~~~A~~~~~~~~~~~~~~ 110 (280)
T PF13429_consen 41 PDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKAN-PQDYE------RLI--QL-LQDGDPEEALKLAEKAYERDGDP 110 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccc-ccccc------ccc--cc-ccccccccccccccccccccccc
Confidence 4567889999999999999999999999864322210 00000 000 00 1233344554444332
Q ss_pred CCHHHHHHHHHHhCCHHHHHHHHHHhc-------ChHHHHHHHHHHHHcCCHHHHHHHHHHcc-----CH---HHHHHHH
Q 035724 1135 GKADSAAKCFYNLGEYERAGRIYLERR-------EEPELEKAGECFFLAGCYKLAADVYAKGK-----FF---SECLAVC 1199 (1939)
Q Consensus 1135 G~~~kAaecy~kag~~~~A~eLY~e~~-------~e~~~~qaAe~fE~~G~y~eAAelY~kag-----d~---dkAI~my 1199 (1939)
.....++.+|...++++++.++..+.. +...+...|.++.+.|++++|.++|.++= +. ...+-++
T Consensus 111 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~l 190 (280)
T PF13429_consen 111 RYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLL 190 (280)
T ss_dssp -------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 334567888888999988888876631 11237788999999999999999999882 11 1234466
Q ss_pred HhcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHH
Q 035724 1200 SKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRSVDLMRKF 1279 (1939)
Q Consensus 1200 ~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s~eeA~~~ 1279 (1939)
...++++++.++++.|.+..+.++ .+...-+..|..+|+.+.|...++..-.... .
T Consensus 191 i~~~~~~~~~~~l~~~~~~~~~~~---------------------~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p-~-- 246 (280)
T PF13429_consen 191 IDMGDYDEAREALKRLLKAAPDDP---------------------DLWDALAAAYLQLGRYEEALEYLEKALKLNP-D-- 246 (280)
T ss_dssp CTTCHHHHHHHHHHHHHHH-HTSC---------------------CHCHHHHHHHHHHT-HHHHHHHHHHHHHHST-T--
T ss_pred HHCCChHHHHHHHHHHHHHCcCHH---------------------HHHHHHHHHhccccccccccccccccccccc-c--
Confidence 778888888888887666432220 1112236678888988888876664221110 0
Q ss_pred HHhhcCHHHHHHHHHhcCCHHHHHHHHH
Q 035724 1280 LKSLSCFDDLLVLEEESGNFMDAANIAR 1307 (1939)
Q Consensus 1280 L~k~~~ldea~ell~e~G~feEAa~Lak 1307 (1939)
...-+...++++...|++++|..+.+
T Consensus 247 --d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 247 --DPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp ---HHHHHHHHHHHT-------------
T ss_pred --cccccccccccccccccccccccccc
Confidence 00111233455566666666655443
No 96
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.53 E-value=0.0054 Score=81.83 Aligned_cols=150 Identities=13% Similarity=0.080 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHH-cCCHHHHHHH
Q 035724 1065 PEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEA-IGKADSAAKC 1143 (1939)
Q Consensus 1065 peeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~-~G~~~kAaec 1143 (1939)
...|..+|..++..+++++|+.+|.++-.... ....++....... ....+..++...|.+|.++.-. ..-+..-+.+
T Consensus 331 a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~~~la~~~-~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~ 408 (615)
T TIGR00990 331 AIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSYIKRASMN-LELGDPDKAEEDFDKALKLNSEDPDIYYHRAQL 408 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34688999999999999999999999843111 0011110000000 0001111122222222111000 0001112334
Q ss_pred HHHhCCHHHHHHHHHHhcC-----hHHHHHHHHHHHHcCCHHHHHHHHHHccC--------HHHHHHHHHhcCChHHHHH
Q 035724 1144 FYNLGEYERAGRIYLERRE-----EPELEKAGECFFLAGCYKLAADVYAKGKF--------FSECLAVCSKGKLFEIGLQ 1210 (1939)
Q Consensus 1144 y~kag~~~~A~eLY~e~~~-----e~~~~qaAe~fE~~G~y~eAAelY~kagd--------~dkAI~my~k~k~fd~air 1210 (1939)
|...|++++|.+.|.+... ...+...|..+...|++++|.+.|.++-. +.....++...|+|++|+.
T Consensus 409 ~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~ 488 (615)
T TIGR00990 409 HFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIE 488 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHH
Confidence 4445555555555544311 12356778999999999999999988722 2233457778889999988
Q ss_pred HHHhhh
Q 035724 1211 YMNHWK 1216 (1939)
Q Consensus 1211 Lv~q~~ 1216 (1939)
..++-.
T Consensus 489 ~~~~Al 494 (615)
T TIGR00990 489 KFDTAI 494 (615)
T ss_pred HHHHHH
Confidence 877533
No 97
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.53 E-value=0.00015 Score=94.66 Aligned_cols=111 Identities=15% Similarity=0.169 Sum_probs=61.9
Q ss_pred HHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHh--c----------------------CCcEEEEcccch
Q 035724 213 QAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCF--T----------------------KASLIFCTASSS 268 (1939)
Q Consensus 213 Q~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l--~----------------------~a~vI~~T~sss 268 (1939)
|..++....+....+..++..|++|||||||||++..+++.+. . ..+++....++.
T Consensus 18 q~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~ 97 (584)
T PRK14952 18 QEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASH 97 (584)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEeccccc
Confidence 4444444333322334466789999999999999998885443 1 123333222111
Q ss_pred ---hhHHhh--------hccCCcEEEEeCCcccchH--HhhccccCC--CcceEEEE-eccccCCcceecc
Q 035724 269 ---YKLHRV--------AMEQLKFLVIDEAAQLKEV--ESAIPLKLP--GIQHAILI-GDECQLPAMVESS 323 (1939)
Q Consensus 269 ---~~l~~l--------~~~~fdvVIIDEASQ~~E~--e~lipL~~~--~~~rlVLi-GD~~QLpPvV~s~ 323 (1939)
-....+ ....+.++|||||.+++.. ..++..... +...+||+ +++..++|++.|.
T Consensus 98 ~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SR 168 (584)
T PRK14952 98 GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSR 168 (584)
T ss_pred cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHh
Confidence 111111 1256789999999999876 333333322 23333433 4566677776554
No 98
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.52 E-value=0.00015 Score=95.31 Aligned_cols=96 Identities=22% Similarity=0.209 Sum_probs=58.3
Q ss_pred CCCcEEEEeCCCCCchhHHHHHHHHHHhcC----------------------CcEEEEccc---chhhHHhh--------
Q 035724 228 HKATVELIWGPPGTGKTKTVSMLLDFCFTK----------------------ASLIFCTAS---SSYKLHRV-------- 274 (1939)
Q Consensus 228 ~~~~v~LI~GPPGTGKTtti~~li~~~l~~----------------------a~vI~~T~s---ss~~l~~l-------- 274 (1939)
..++..|++|||||||||++..+++.+.-. .+++..-.. +.-....+
T Consensus 36 rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p 115 (647)
T PRK07994 36 RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAP 115 (647)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhh
Confidence 345668999999999999999888544321 122221111 11111111
Q ss_pred hccCCcEEEEeCCcccchH--HhhccccCCCcceEEEEe---ccccCCcceecc
Q 035724 275 AMEQLKFLVIDEAAQLKEV--ESAIPLKLPGIQHAILIG---DECQLPAMVESS 323 (1939)
Q Consensus 275 ~~~~fdvVIIDEASQ~~E~--e~lipL~~~~~~rlVLiG---D~~QLpPvV~s~ 323 (1939)
...++.++|||||.+++.. ..++.....+..++++|. |+..|+|++.|.
T Consensus 116 ~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SR 169 (647)
T PRK07994 116 ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 (647)
T ss_pred hcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhh
Confidence 1257899999999999975 445444433334444444 667788887654
No 99
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.52 E-value=0.0064 Score=78.22 Aligned_cols=232 Identities=15% Similarity=0.076 Sum_probs=138.5
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 035724 1068 WKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCFYNL 1147 (1939)
Q Consensus 1068 W~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy~ka 1147 (1939)
...+|..++.+++|+.|...|++|-+. +++..++ ..+. -.......|.+|...+++.+|+.+|.+
T Consensus 202 ~~~La~~y~~~g~~e~A~~l~k~Al~~----l~k~~G~---------~hl~-va~~l~~~a~~y~~~~k~~eAv~ly~~- 266 (508)
T KOG1840|consen 202 LRNLAEMYAVQGRLEKAEPLCKQALRI----LEKTSGL---------KHLV-VASMLNILALVYRSLGKYDEAVNLYEE- 266 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHH----HHHccCc---------cCHH-HHHHHHHHHHHHHHhccHHHHHHHHHH-
Confidence 356899999999999999999988542 3343331 0111 112233688899999999999776654
Q ss_pred CCHHHHHHHHHHhcCh------HHHHHHHHHHHHcCCHHHHHHHHHHccC----------------HHHHHHHHHhcCCh
Q 035724 1148 GEYERAGRIYLERREE------PELEKAGECFFLAGCYKLAADVYAKGKF----------------FSECLAVCSKGKLF 1205 (1939)
Q Consensus 1148 g~~~~A~eLY~e~~~e------~~~~qaAe~fE~~G~y~eAAelY~kagd----------------~dkAI~my~k~k~f 1205 (1939)
|..+..+..++ ..+...|..|.+.|+|++|.++|.++=+ +...+.++...+.+
T Consensus 267 -----AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~ 341 (508)
T KOG1840|consen 267 -----ALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEY 341 (508)
T ss_pred -----HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcch
Confidence 44554443332 1267889999999999999998877732 22344566667788
Q ss_pred HHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHH----HHHH
Q 035724 1206 EIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRSVDLMR----KFLK 1281 (1939)
Q Consensus 1206 d~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s~eeA~----~~L~ 1281 (1939)
++|..+.++-.+....- ... ..-........-+..|...|..++|.++++..=+.-... ....
T Consensus 342 Eea~~l~q~al~i~~~~----------~g~---~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~ 408 (508)
T KOG1840|consen 342 EEAKKLLQKALKIYLDA----------PGE---DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV 408 (508)
T ss_pred hHHHHHHHHHHHHHHhh----------ccc---cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence 88888877322211100 000 000111222233667999999999999887432222100 0000
Q ss_pred hhcCHHHHHHHHHhcCCHHHHHHHHHHcC---------------CHHHHHHHHHHhCCHHHHHHHHH
Q 035724 1282 SLSCFDDLLVLEEESGNFMDAANIARLRG---------------DIFLAVDLLQKAGCFKEACNVTL 1333 (1939)
Q Consensus 1282 k~~~ldea~ell~e~G~feEAa~Lak~~G---------------k~~eAi~my~kAG~~~eA~rva~ 1333 (1939)
..-+-..+..+.+.+++.+|++++.... .+.-=+..|..-|++++|..++.
T Consensus 409 -~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~ 474 (508)
T KOG1840|consen 409 -GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEE 474 (508)
T ss_pred -hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 0112233344566777777766655442 12223567888999999988876
No 100
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.52 E-value=0.00018 Score=89.57 Aligned_cols=110 Identities=22% Similarity=0.205 Sum_probs=60.9
Q ss_pred HHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcC----------------------CcEEEEcccc---
Q 035724 213 QAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTK----------------------ASLIFCTASS--- 267 (1939)
Q Consensus 213 Q~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~----------------------a~vI~~T~ss--- 267 (1939)
|..++....+....+..++..+++|||||||||++..+++.+.-. .+++...+++
T Consensus 21 q~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~~~ 100 (363)
T PRK14961 21 QKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASRTK 100 (363)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccccCC
Confidence 555555443333223345667999999999999999988655311 1233222211
Q ss_pred hhhHHhh----h----ccCCcEEEEeCCcccchH--HhhccccC--CCcceEEEEe-ccccCCcceec
Q 035724 268 SYKLHRV----A----MEQLKFLVIDEAAQLKEV--ESAIPLKL--PGIQHAILIG-DECQLPAMVES 322 (1939)
Q Consensus 268 s~~l~~l----~----~~~fdvVIIDEASQ~~E~--e~lipL~~--~~~~rlVLiG-D~~QLpPvV~s 322 (1939)
......+ . ...+.++|||||..++.. ..++.... ++..++|+++ +..+++|++.|
T Consensus 101 v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~S 168 (363)
T PRK14961 101 VEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILS 168 (363)
T ss_pred HHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHh
Confidence 1111111 1 234679999999999864 33433322 2334566665 44566665543
No 101
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.51 E-value=0.0079 Score=80.82 Aligned_cols=277 Identities=8% Similarity=-0.042 Sum_probs=141.0
Q ss_pred cCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHc-CCHHHH
Q 035724 1062 ASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAI-GKADSA 1140 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~-G~~~kA 1140 (1939)
..+++.+..+|...+..|++++|+..|+++-...... ..++...... .....+..++...|.+|.++.-.. .-+...
T Consensus 73 p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~-~~a~~~la~~-l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~l 150 (656)
T PRK15174 73 KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQ-PEDVLLVASV-LLKSKQYATVADLAEQAWLAFSGNSQIFALH 150 (656)
T ss_pred CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 5667889999999999999999999999874311100 0111100000 000111222222222222221000 001122
Q ss_pred HHHHHHhCCHHHHHHHHHHhc----Ch-HHHHHHHHHHHHcCCHHHHHHHHHHccCH---------HHHHHHHHhcCChH
Q 035724 1141 AKCFYNLGEYERAGRIYLERR----EE-PELEKAGECFFLAGCYKLAADVYAKGKFF---------SECLAVCSKGKLFE 1206 (1939)
Q Consensus 1141 aecy~kag~~~~A~eLY~e~~----~e-~~~~qaAe~fE~~G~y~eAAelY~kagd~---------dkAI~my~k~k~fd 1206 (1939)
+.++...|++++|.+.|.+.. .. ..+...+ .+...|++.+|.+.|.++-.. ..+..++.+.++++
T Consensus 151 a~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~ 229 (656)
T PRK15174 151 LRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQ 229 (656)
T ss_pred HHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHH
Confidence 445555666666666554321 11 1122222 367789999999888774221 12345677788888
Q ss_pred HHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHH----HHHHHHHhccHHHHHHHHHh
Q 035724 1207 IGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKS----MMKFVKSFRSVDLMRKFLKS 1282 (1939)
Q Consensus 1207 ~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~----A~~~~~~~~s~eeA~~~L~k 1282 (1939)
+|+...++..+..+.. ......-+..|...|++.+ |.+.+...-..+- ..
T Consensus 230 eA~~~~~~al~~~p~~---------------------~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-----~~ 283 (656)
T PRK15174 230 EAIQTGESALARGLDG---------------------AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-----DN 283 (656)
T ss_pred HHHHHHHHHHhcCCCC---------------------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-----CC
Confidence 8888888644432211 0111122566777888765 4444432111100 00
Q ss_pred hcCHHHHHHHHHhcCCHHHHHHHHHHc-----CCH---HHHHHHHHHhCCHHHHHHHHHHHh-----hhhccccCCCCCC
Q 035724 1283 LSCFDDLLVLEEESGNFMDAANIARLR-----GDI---FLAVDLLQKAGCFKEACNVTLNHV-----ISNSLWSPGSKGW 1349 (1939)
Q Consensus 1283 ~~~ldea~ell~e~G~feEAa~Lak~~-----Gk~---~eAi~my~kAG~~~eA~rva~~~~-----~~~~l~~~~~~~~ 1349 (1939)
..-+.....++...|++++|...+++. +.+ ..-+..|.+.|++++|...+.+-. .+..+..-+..-.
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~ 363 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALL 363 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 011223456677788888887665543 111 112456677788888877665442 0111111122223
Q ss_pred CCcchhhHHHHHHHHHhH
Q 035724 1350 PLKQFTKKKELLEKAKSL 1367 (1939)
Q Consensus 1350 ~~~~~~~ae~ll~~A~~~ 1367 (1939)
..+++.+|.+.|.+|-+.
T Consensus 364 ~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 364 QAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HCCCHHHHHHHHHHHHHh
Confidence 456688888888888764
No 102
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.50 E-value=0.00016 Score=92.69 Aligned_cols=95 Identities=20% Similarity=0.254 Sum_probs=53.7
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHhcC----------------------CcEEEEcccc---hhhHHhh--------h
Q 035724 229 KATVELIWGPPGTGKTKTVSMLLDFCFTK----------------------ASLIFCTASS---SYKLHRV--------A 275 (1939)
Q Consensus 229 ~~~v~LI~GPPGTGKTtti~~li~~~l~~----------------------a~vI~~T~ss---s~~l~~l--------~ 275 (1939)
.++..|++|||||||||++..+++.+... .+++-..+++ ......+ .
T Consensus 35 l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~ 114 (472)
T PRK14962 35 ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPM 114 (472)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChh
Confidence 34557999999999999999888654321 1233222211 1111111 1
Q ss_pred ccCCcEEEEeCCcccchH--HhhccccCCCcceEEEEe---ccccCCcceecc
Q 035724 276 MEQLKFLVIDEAAQLKEV--ESAIPLKLPGIQHAILIG---DECQLPAMVESS 323 (1939)
Q Consensus 276 ~~~fdvVIIDEASQ~~E~--e~lipL~~~~~~rlVLiG---D~~QLpPvV~s~ 323 (1939)
.....+|||||+..++.. ..++.....+..++++++ ++..++|.+.+.
T Consensus 115 ~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR 167 (472)
T PRK14962 115 EGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISR 167 (472)
T ss_pred cCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcC
Confidence 235689999999998754 334444332234455443 445666665443
No 103
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.47 E-value=0.00019 Score=85.39 Aligned_cols=101 Identities=21% Similarity=0.381 Sum_probs=64.6
Q ss_pred HHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcCC-cEEE--EcccchhhHHh---------hhccCCc
Q 035724 213 QAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTKA-SLIF--CTASSSYKLHR---------VAMEQLK 280 (1939)
Q Consensus 213 Q~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~a-~vI~--~T~sss~~l~~---------l~~~~fd 280 (1939)
|.--+...+.... -+-.++|||||||||+++..|+...-... +.|- +|.++...... ....+-.
T Consensus 149 q~gllrs~ieq~~----ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq~~~~l~krkT 224 (554)
T KOG2028|consen 149 QDGLLRSLIEQNR----IPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQNEKSLTKRKT 224 (554)
T ss_pred cchHHHHHHHcCC----CCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHHHHHHhhhccee
Confidence 4445555655322 24459999999999999887774433332 1221 23222221111 1235568
Q ss_pred EEEEeCCcccchH--HhhccccCCCcceEEEEeccccCCcc
Q 035724 281 FLVIDEAAQLKEV--ESAIPLKLPGIQHAILIGDECQLPAM 319 (1939)
Q Consensus 281 vVIIDEASQ~~E~--e~lipL~~~~~~rlVLiGD~~QLpPv 319 (1939)
+++|||....... ..++|... ..-++|||-...-|++
T Consensus 225 ilFiDEiHRFNksQQD~fLP~VE--~G~I~lIGATTENPSF 263 (554)
T KOG2028|consen 225 ILFIDEIHRFNKSQQDTFLPHVE--NGDITLIGATTENPSF 263 (554)
T ss_pred EEEeHHhhhhhhhhhhcccceec--cCceEEEecccCCCcc
Confidence 9999999999876 67888875 3579999998887765
No 104
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.47 E-value=0.0048 Score=81.05 Aligned_cols=78 Identities=19% Similarity=0.097 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHhCCHHHHHHHHHHHh------hhhccccCCCCCCCCcchhhHHHHHHHHHhHhhhhhHHHHHHHhhhh
Q 035724 1310 GDIFLAVDLLQKAGCFKEACNVTLNHV------ISNSLWSPGSKGWPLKQFTKKKELLEKAKSLAKNESNQFYEFVCTEA 1383 (1939)
Q Consensus 1310 Gk~~eAi~my~kAG~~~eA~rva~~~~------~~~~l~~~~~~~~~~~~~~~ae~ll~~A~~~~~~~s~~~~~~~~~e~ 1383 (1939)
|-+.+.+++|...|.+.+|++.+-.-+ -+.+.|..|+.--+.+.+.+|.+.+.++-. .+
T Consensus 415 dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~---------------~~ 479 (895)
T KOG2076|consen 415 DLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLI---------------LA 479 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHh---------------cC
Confidence 455678888889999999988876553 344677777776677777666666655554 22
Q ss_pred hccccCCCCHHHHHHHHhh
Q 035724 1384 DILSNDQSDLSIINQQLNA 1402 (1939)
Q Consensus 1384 ~~~~~~~~~~~~~~~~~~~ 1402 (1939)
----|-.-+|++|.+++..
T Consensus 480 p~~~D~Ri~Lasl~~~~g~ 498 (895)
T KOG2076|consen 480 PDNLDARITLASLYQQLGN 498 (895)
T ss_pred CCchhhhhhHHHHHHhcCC
Confidence 2233455678888887754
No 105
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.46 E-value=0.00023 Score=93.32 Aligned_cols=97 Identities=21% Similarity=0.209 Sum_probs=58.6
Q ss_pred CCCCcEEEEeCCCCCchhHHHHHHHHHHhcC----------------------CcEEEEcccc---hhhHHhh-------
Q 035724 227 DHKATVELIWGPPGTGKTKTVSMLLDFCFTK----------------------ASLIFCTASS---SYKLHRV------- 274 (1939)
Q Consensus 227 ~~~~~v~LI~GPPGTGKTtti~~li~~~l~~----------------------a~vI~~T~ss---s~~l~~l------- 274 (1939)
+..++..|++|||||||||++..+.+.+.-. .+++-....+ ......+
T Consensus 35 gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~ 114 (830)
T PRK07003 35 GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYA 114 (830)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhc
Confidence 3446778999999999999999888654321 1233222211 1011111
Q ss_pred -hccCCcEEEEeCCcccchH--HhhccccC--CCcceEEEEe-ccccCCcceecc
Q 035724 275 -AMEQLKFLVIDEAAQLKEV--ESAIPLKL--PGIQHAILIG-DECQLPAMVESS 323 (1939)
Q Consensus 275 -~~~~fdvVIIDEASQ~~E~--e~lipL~~--~~~~rlVLiG-D~~QLpPvV~s~ 323 (1939)
...++.++||||+.+++.. ..++-... +...++||+. |..+++|++.|.
T Consensus 115 P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSR 169 (830)
T PRK07003 115 PVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 (830)
T ss_pred cccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhh
Confidence 1246899999999999874 33433322 2345666665 667778887654
No 106
>PLN03025 replication factor C subunit; Provisional
Probab=97.46 E-value=0.00038 Score=85.28 Aligned_cols=99 Identities=18% Similarity=0.232 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcC---CcEEEEcccchh---hHH----h------
Q 035724 210 NDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTK---ASLIFCTASSSY---KLH----R------ 273 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~---a~vI~~T~sss~---~l~----~------ 273 (1939)
++.....+..++... ..+-.+++||||||||+++..+++.+... ..++-...+... ... .
T Consensus 18 ~~~~~~~L~~~~~~~----~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~~i~~~~~~~~ 93 (319)
T PLN03025 18 NEDAVSRLQVIARDG----NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKV 93 (319)
T ss_pred cHHHHHHHHHHHhcC----CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHHHHHHHHHhccc
Confidence 455555666655531 22346899999999999999998776432 122222221110 010 0
Q ss_pred -hhccCCcEEEEeCCcccchH--Hhhcccc--CCCcceEEEEec
Q 035724 274 -VAMEQLKFLVIDEAAQLKEV--ESAIPLK--LPGIQHAILIGD 312 (1939)
Q Consensus 274 -l~~~~fdvVIIDEASQ~~E~--e~lipL~--~~~~~rlVLiGD 312 (1939)
.....+.++|||||.+++.. ..+.... .++..++|++..
T Consensus 94 ~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n 137 (319)
T PLN03025 94 TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACN 137 (319)
T ss_pred cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeC
Confidence 01245799999999999875 2332221 234567888774
No 107
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.46 E-value=0.00016 Score=75.98 Aligned_cols=84 Identities=27% Similarity=0.381 Sum_probs=51.2
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHhc------CCcEEEEcccchhhHHh-----------------------------h
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCFT------KASLIFCTASSSYKLHR-----------------------------V 274 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l~------~a~vI~~T~sss~~l~~-----------------------------l 274 (1939)
..+.+|+||||+|||+++..+++.... ...++..++........ +
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 467899999999999999999976654 56666653322110000 0
Q ss_pred hccCCcEEEEeCCccc-chH--HhhccccCCCcceEEEEecc
Q 035724 275 AMEQLKFLVIDEAAQL-KEV--ESAIPLKLPGIQHAILIGDE 313 (1939)
Q Consensus 275 ~~~~fdvVIIDEASQ~-~E~--e~lipL~~~~~~rlVLiGD~ 313 (1939)
......+||||||..+ +.. +.+.-+.....-++|++|-+
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEECh
Confidence 1122358999999998 533 22222333455689999976
No 108
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.0013 Score=75.15 Aligned_cols=41 Identities=10% Similarity=-0.019 Sum_probs=21.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHccCHHHHHHHHHhcCChHHHHHHH
Q 035724 1166 LEKAGECFFLAGCYKLAADVYAKGKFFSECLAVCSKGKLFEIGLQYM 1212 (1939)
Q Consensus 1166 ~~qaAe~fE~~G~y~eAAelY~kagd~dkAI~my~k~k~fd~airLv 1212 (1939)
++++|-...+...|.||+.+|+ ||+.+|.++|-.|-|.--+
T Consensus 74 yEqaamLake~~klsEvvdl~e------KAs~lY~E~GspdtAAmal 114 (308)
T KOG1585|consen 74 YEQAAMLAKELSKLSEVVDLYE------KASELYVECGSPDTAAMAL 114 (308)
T ss_pred HHHHHHHHHHHHHhHHHHHHHH------HHHHHHHHhCCcchHHHHH
Confidence 4445555555555555555543 4555666666555443333
No 109
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.41 E-value=0.00031 Score=77.62 Aligned_cols=39 Identities=23% Similarity=0.268 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLL 251 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li 251 (1939)
..+++.|.+++..++... ...+|.||+|||||+++...+
T Consensus 7 ~~~~~~Q~~~~~~~~~~~------~~~~i~~~~GsGKT~~~~~~~ 45 (201)
T smart00487 7 EPLRPYQKEAIEALLSGL------RDVILAAPTGSGKTLAALLPA 45 (201)
T ss_pred CCCCHHHHHHHHHHHcCC------CcEEEECCCCCchhHHHHHHH
Confidence 568999999999998721 577999999999999776666
No 110
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.41 E-value=0.0033 Score=80.04 Aligned_cols=137 Identities=23% Similarity=0.153 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHcCCHHHHH----------HHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC
Q 035724 1122 VNLREAAKIFEAIGKADSAA----------KCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF 1191 (1939)
Q Consensus 1122 ~~y~eAA~lYe~~G~~~kAa----------ecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd 1191 (1939)
.....++..+++.|.++.|. ++-.++|+.+.|.+++.+.-....|++.|+.+-..|+++.|+++|.++++
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 34567888888888888884 55678999999999987755567899999999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 035724 1192 FSECLAVCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFR 1271 (1939)
Q Consensus 1192 ~dkAI~my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~ 1271 (1939)
+++..=+|.-.|+-+++-++... ..+.|++-.
T Consensus 376 ~~~L~lLy~~~g~~~~L~kl~~~---------------------------------------a~~~~~~n~--------- 407 (443)
T PF04053_consen 376 FSGLLLLYSSTGDREKLSKLAKI---------------------------------------AEERGDINI--------- 407 (443)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH---------------------------------------HHHTT-HHH---------
T ss_pred ccccHHHHHHhCCHHHHHHHHHH---------------------------------------HHHccCHHH---------
Confidence 99999998888875544444331 122232222
Q ss_pred cHHHHHHHHHhhcCHHHHHHHHHhcCCHHHHHHHHHHcC
Q 035724 1272 SVDLMRKFLKSLSCFDDLLVLEEESGNFMDAANIARLRG 1310 (1939)
Q Consensus 1272 s~eeA~~~L~k~~~ldea~ell~e~G~feEAa~Lak~~G 1310 (1939)
|+...--.|+++++++++++.|++.+|+-.|+.+|
T Consensus 408 ----af~~~~~lgd~~~cv~lL~~~~~~~~A~~~A~ty~ 442 (443)
T PF04053_consen 408 ----AFQAALLLGDVEECVDLLIETGRLPEAALFARTYG 442 (443)
T ss_dssp ----HHHHHHHHT-HHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred ----HHHHHHHcCCHHHHHHHHHHcCCchHHHHHHHhcC
Confidence 22222235778888888888888888888887664
No 111
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.40 E-value=0.00031 Score=72.75 Aligned_cols=66 Identities=27% Similarity=0.381 Sum_probs=44.3
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHhcCC-cEEEEcccchh-----------------------hHH----hhhccCCcE
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCFTKA-SLIFCTASSSY-----------------------KLH----RVAMEQLKF 281 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l~~a-~vI~~T~sss~-----------------------~l~----~l~~~~fdv 281 (1939)
....+|.||||||||+++..++..+.... .++..++.... ... .......++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 35679999999999999999987776654 45544332210 000 012234699
Q ss_pred EEEeCCcccchHHh
Q 035724 282 LVIDEAAQLKEVES 295 (1939)
Q Consensus 282 VIIDEASQ~~E~e~ 295 (1939)
++|||+..+.....
T Consensus 82 iiiDei~~~~~~~~ 95 (148)
T smart00382 82 LILDEITSLLDAEQ 95 (148)
T ss_pred EEEECCcccCCHHH
Confidence 99999999877643
No 112
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.39 E-value=0.00024 Score=92.27 Aligned_cols=94 Identities=22% Similarity=0.211 Sum_probs=55.9
Q ss_pred CCCcEEEEeCCCCCchhHHHHHHHHHHhc----------------------CCcEEEEcccc---hhhHHhh--------
Q 035724 228 HKATVELIWGPPGTGKTKTVSMLLDFCFT----------------------KASLIFCTASS---SYKLHRV-------- 274 (1939)
Q Consensus 228 ~~~~v~LI~GPPGTGKTtti~~li~~~l~----------------------~a~vI~~T~ss---s~~l~~l-------- 274 (1939)
..++..|++|||||||||++..+++.+.- ..+++..-+++ ......+
T Consensus 35 rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P 114 (702)
T PRK14960 35 RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAP 114 (702)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhh
Confidence 34567899999999999999988865431 11333222111 1111111
Q ss_pred hccCCcEEEEeCCcccchH--HhhccccC--CCcceEEEEe-ccccCCccee
Q 035724 275 AMEQLKFLVIDEAAQLKEV--ESAIPLKL--PGIQHAILIG-DECQLPAMVE 321 (1939)
Q Consensus 275 ~~~~fdvVIIDEASQ~~E~--e~lipL~~--~~~~rlVLiG-D~~QLpPvV~ 321 (1939)
...++.++|||||.+++.. ..++.... ++..++||+. |+..+|+++.
T Consensus 115 ~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIl 166 (702)
T PRK14960 115 TQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVI 166 (702)
T ss_pred hcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHH
Confidence 1246789999999999865 33443332 2344677765 5566666653
No 113
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.39 E-value=0.00029 Score=91.24 Aligned_cols=110 Identities=22% Similarity=0.205 Sum_probs=61.3
Q ss_pred HHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcC----------------------CcEEEEcc---cc
Q 035724 213 QAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTK----------------------ASLIFCTA---SS 267 (1939)
Q Consensus 213 Q~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~----------------------a~vI~~T~---ss 267 (1939)
|..++....+....+..++..|++|||||||||++..+++.+.-. .+++.... .+
T Consensus 21 q~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~~g 100 (546)
T PRK14957 21 QQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTG 100 (546)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccccC
Confidence 444444433333333445668999999999999999998655421 12222111 11
Q ss_pred hhhHHhh--------hccCCcEEEEeCCcccchH--HhhccccCC--CcceEEEEe-ccccCCcceec
Q 035724 268 SYKLHRV--------AMEQLKFLVIDEAAQLKEV--ESAIPLKLP--GIQHAILIG-DECQLPAMVES 322 (1939)
Q Consensus 268 s~~l~~l--------~~~~fdvVIIDEASQ~~E~--e~lipL~~~--~~~rlVLiG-D~~QLpPvV~s 322 (1939)
......+ ....+.++|||||.+++.. ..++..... +...+||+. |...++|++.|
T Consensus 101 vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~S 168 (546)
T PRK14957 101 VEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILS 168 (546)
T ss_pred HHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHH
Confidence 1111111 1246789999999998874 344444332 334455544 55566666543
No 114
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.39 E-value=0.00039 Score=89.69 Aligned_cols=97 Identities=25% Similarity=0.326 Sum_probs=59.8
Q ss_pred CCCCcEEEEeCCCCCchhHHHHHHHHHHhc----------------------CCcEEEEcccc---hhhHHhh-------
Q 035724 227 DHKATVELIWGPPGTGKTKTVSMLLDFCFT----------------------KASLIFCTASS---SYKLHRV------- 274 (1939)
Q Consensus 227 ~~~~~v~LI~GPPGTGKTtti~~li~~~l~----------------------~a~vI~~T~ss---s~~l~~l------- 274 (1939)
+..++..|++||||||||+++..+++.+.. +.+++-..+++ .......
T Consensus 33 grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~ 112 (535)
T PRK08451 33 NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYK 112 (535)
T ss_pred CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhC
Confidence 345677899999999999999988866542 12333322221 1111111
Q ss_pred -hccCCcEEEEeCCcccchH--HhhccccC--CCcceEEEEe-ccccCCcceecc
Q 035724 275 -AMEQLKFLVIDEAAQLKEV--ESAIPLKL--PGIQHAILIG-DECQLPAMVESS 323 (1939)
Q Consensus 275 -~~~~fdvVIIDEASQ~~E~--e~lipL~~--~~~~rlVLiG-D~~QLpPvV~s~ 323 (1939)
....+.++|||||.+++.. ..++.... ++..++||++ |+..++|++.|.
T Consensus 113 P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SR 167 (535)
T PRK08451 113 PSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSR 167 (535)
T ss_pred cccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhh
Confidence 1145789999999999875 33333322 3455677776 556778777554
No 115
>PLN03077 Protein ECB2; Provisional
Probab=97.38 E-value=0.013 Score=81.34 Aligned_cols=223 Identities=9% Similarity=-0.003 Sum_probs=122.9
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHhCC-------cchHHHHHHhh---hHHhhhh----hhcCCchHhHHHHHHHHH
Q 035724 1064 SPEEWKSRGIKLFHEHNYDMATICFEKAKD-------SYWEGRSKATG---LKATADR----CRSSNPKQANVNLREAAK 1129 (1939)
Q Consensus 1064 tpeeW~~lG~~l~~q~~yd~A~kcF~rAgd-------~~~~~l~kA~~---l~e~a~~----~~s~~~~ea~~~y~eAA~ 1129 (1939)
+..-|-.+...+.+.+++++|.+.|.+... ..+..+..++. ..+.+.. ............|.....
T Consensus 353 d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~ 432 (857)
T PLN03077 353 DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432 (857)
T ss_pred CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 345688888888888999999999986422 11112222221 1111110 001111112234556667
Q ss_pred HHHHcCCHHHHHHHHH------------------HhCCHHHHHHHHHHhcCh---HH---------------H-------
Q 035724 1130 IFEAIGKADSAAKCFY------------------NLGEYERAGRIYLERREE---PE---------------L------- 1166 (1939)
Q Consensus 1130 lYe~~G~~~kAaecy~------------------kag~~~~A~eLY~e~~~e---~~---------------~------- 1166 (1939)
+|.++|+.++|.++|. +.|++++|.+++.+.... +. +
T Consensus 433 ~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~ 512 (857)
T PLN03077 433 MYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIH 512 (857)
T ss_pred HHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHH
Confidence 7777777777766554 456677777777663110 00 0
Q ss_pred ---------------HHHHHHHHHcCCHHHHHHHHHHccC----HHHHHHHHHhcCChHHHHHHHHhhhhcccccccccc
Q 035724 1167 ---------------EKAGECFFLAGCYKLAADVYAKGKF----FSECLAVCSKGKLFEIGLQYMNHWKQHADTDVEHAG 1227 (1939)
Q Consensus 1167 ---------------~qaAe~fE~~G~y~eAAelY~kagd----~dkAI~my~k~k~fd~airLv~q~~d~l~~~~~~~~ 1227 (1939)
...-+.|.+.|+.++|.+.|..... |.--|..|.++|+.++|+++.++-.+.-. .|.
T Consensus 513 ~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~-~Pd--- 588 (857)
T PLN03077 513 AHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV-NPD--- 588 (857)
T ss_pred HHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC---
Confidence 0112678888999999999988732 66678889999999999999885433100 000
Q ss_pred cchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHHhhcCHHHHHHHHHhcCCHHHHHHHHH
Q 035724 1228 TDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRSVDLMRKFLKSLSCFDDLLVLEEESGNFMDAANIAR 1307 (1939)
Q Consensus 1228 ~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s~eeA~~~L~k~~~ldea~ell~e~G~feEAa~Lak 1307 (1939)
....... ...|.+.|++++|.+++....... .+--....+.-.++++.+.|++++|.++.+
T Consensus 589 ------------~~T~~~l----l~a~~~~g~v~ea~~~f~~M~~~~---gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~ 649 (857)
T PLN03077 589 ------------EVTFISL----LCACSRSGMVTQGLEYFHSMEEKY---SITPNLKHYACVVDLLGRAGKLTEAYNFIN 649 (857)
T ss_pred ------------cccHHHH----HHHHhhcChHHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 0001111 233667777777776665432110 000001123445566667777777766665
Q ss_pred Hc
Q 035724 1308 LR 1309 (1939)
Q Consensus 1308 ~~ 1309 (1939)
..
T Consensus 650 ~m 651 (857)
T PLN03077 650 KM 651 (857)
T ss_pred HC
Confidence 53
No 116
>PLN03077 Protein ECB2; Provisional
Probab=97.35 E-value=0.0075 Score=83.54 Aligned_cols=26 Identities=12% Similarity=0.114 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHhC
Q 035724 1067 EWKSRGIKLFHEHNYDMATICFEKAK 1092 (1939)
Q Consensus 1067 eW~~lG~~l~~q~~yd~A~kcF~rAg 1092 (1939)
-|-.+-..+.+.+++++|...|.+..
T Consensus 255 s~n~li~~~~~~g~~~eAl~lf~~M~ 280 (857)
T PLN03077 255 SWNAMISGYFENGECLEGLELFFTMR 280 (857)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 57777778888899999999998753
No 117
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.35 E-value=0.00035 Score=91.59 Aligned_cols=110 Identities=20% Similarity=0.207 Sum_probs=62.7
Q ss_pred HHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcC---------------------------CcEEEEcc
Q 035724 213 QAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTK---------------------------ASLIFCTA 265 (1939)
Q Consensus 213 Q~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~---------------------------a~vI~~T~ 265 (1939)
|..++....+....+..++..|++|||||||||++..+++.+.-. .+++....
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~elda 100 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDA 100 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCc
Confidence 444443333322233456778999999999999999888655421 12222111
Q ss_pred cc---hhhHHhh--------hccCCcEEEEeCCcccchHH--hhccccC--CCcceEEEE-eccccCCcceec
Q 035724 266 SS---SYKLHRV--------AMEQLKFLVIDEAAQLKEVE--SAIPLKL--PGIQHAILI-GDECQLPAMVES 322 (1939)
Q Consensus 266 ss---s~~l~~l--------~~~~fdvVIIDEASQ~~E~e--~lipL~~--~~~~rlVLi-GD~~QLpPvV~s 322 (1939)
.+ .-....+ ...+++++||||+.+++... .++-... ++...+||+ +|+..+++++.|
T Consensus 101 as~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlS 173 (618)
T PRK14951 101 ASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLS 173 (618)
T ss_pred ccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHH
Confidence 11 1011111 12468999999999998753 3333222 233456655 488888877654
No 118
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.34 E-value=0.00076 Score=79.15 Aligned_cols=100 Identities=18% Similarity=0.230 Sum_probs=59.8
Q ss_pred CCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHh-cCCcEEEEcccchhhH--H-hhhccCCcEEEE
Q 035724 209 LNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCF-TKASLIFCTASSSYKL--H-RVAMEQLKFLVI 284 (1939)
Q Consensus 209 LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l-~~a~vI~~T~sss~~l--~-~l~~~~fdvVII 284 (1939)
-|.....++..+... ...+..+|+|||||||||++.++..... ...++++.+....... . ......+|+|||
T Consensus 28 ~n~~a~~~l~~~~~~----~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~dllii 103 (235)
T PRK08084 28 DNDSLLAALQNALRQ----EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWFVPEVLEGMEQLSLVCI 103 (235)
T ss_pred ccHHHHHHHHHHHhC----CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhhhHHHHHHhhhCCEEEE
Confidence 566666666665542 1235679999999999999998875544 3455666544321110 0 011234699999
Q ss_pred eCCcccchH--------HhhccccCCCcceEEEEec
Q 035724 285 DEAAQLKEV--------ESAIPLKLPGIQHAILIGD 312 (1939)
Q Consensus 285 DEASQ~~E~--------e~lipL~~~~~~rlVLiGD 312 (1939)
||+..+... +.+-.+...+..++|+.|+
T Consensus 104 Ddi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~ 139 (235)
T PRK08084 104 DNIECIAGDELWEMAIFDLYNRILESGRTRLLITGD 139 (235)
T ss_pred eChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCC
Confidence 999877432 1112222223347888888
No 119
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.33 E-value=0.00041 Score=90.22 Aligned_cols=105 Identities=24% Similarity=0.271 Sum_probs=60.5
Q ss_pred HHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcC----------------------CcEEEEcccch---h
Q 035724 215 QAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTK----------------------ASLIFCTASSS---Y 269 (1939)
Q Consensus 215 ~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~----------------------a~vI~~T~sss---~ 269 (1939)
+++..++. .+..++..|++|||||||||++..+++.+.-. .+++...+++. -
T Consensus 26 ~~L~~~i~---~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~~~~vd 102 (527)
T PRK14969 26 RALTNALE---QQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAASNTQVD 102 (527)
T ss_pred HHHHHHHH---cCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccccCCHH
Confidence 34444444 23345667999999999999998888554321 13333222111 1
Q ss_pred hHHhh--------hccCCcEEEEeCCcccchH--HhhccccC--CCcceEEEEe-ccccCCcceec
Q 035724 270 KLHRV--------AMEQLKFLVIDEAAQLKEV--ESAIPLKL--PGIQHAILIG-DECQLPAMVES 322 (1939)
Q Consensus 270 ~l~~l--------~~~~fdvVIIDEASQ~~E~--e~lipL~~--~~~~rlVLiG-D~~QLpPvV~s 322 (1939)
....+ ...++.++|||||.+++.. ..++-... ++...+||+. |+..++|++.|
T Consensus 103 ~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~S 168 (527)
T PRK14969 103 AMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLS 168 (527)
T ss_pred HHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHH
Confidence 11111 1245789999999999874 33333322 2344666666 66677776644
No 120
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.32 E-value=0.00035 Score=89.35 Aligned_cols=95 Identities=19% Similarity=0.216 Sum_probs=55.5
Q ss_pred CCCcEEEEeCCCCCchhHHHHHHHHHHh----------------------cCCcEEEEcccch---hhHHhh--------
Q 035724 228 HKATVELIWGPPGTGKTKTVSMLLDFCF----------------------TKASLIFCTASSS---YKLHRV-------- 274 (1939)
Q Consensus 228 ~~~~v~LI~GPPGTGKTtti~~li~~~l----------------------~~a~vI~~T~sss---~~l~~l-------- 274 (1939)
..++-.|++|||||||||++..+++.+. .+.+++-..+++. -....+
T Consensus 33 ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P 112 (491)
T PRK14964 33 KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLP 112 (491)
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhcc
Confidence 3456789999999999999988875321 2334544333221 111111
Q ss_pred hccCCcEEEEeCCcccchH--HhhccccC--CCcceEEEEe-ccccCCcceec
Q 035724 275 AMEQLKFLVIDEAAQLKEV--ESAIPLKL--PGIQHAILIG-DECQLPAMVES 322 (1939)
Q Consensus 275 ~~~~fdvVIIDEASQ~~E~--e~lipL~~--~~~~rlVLiG-D~~QLpPvV~s 322 (1939)
....+.++||||+.+++.. ..++-... ++...+|++. +...+++++.|
T Consensus 113 ~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~S 165 (491)
T PRK14964 113 ISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIIS 165 (491)
T ss_pred ccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHH
Confidence 1246789999999999874 33333322 2334556555 34556666544
No 121
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=97.32 E-value=0.00072 Score=90.68 Aligned_cols=132 Identities=14% Similarity=0.125 Sum_probs=81.1
Q ss_pred cCCcEEEEeCCcccchHHhhccc-cCCCcceEEEEeccccCCcceeccccccccccCCHHHHHHhcC--Ccccccccccc
Q 035724 277 EQLKFLVIDEAAQLKEVESAIPL-KLPGIQHAILIGDECQLPAMVESSVSGEACLGRSLFERLSNLG--QAKHLLSIQYR 353 (1939)
Q Consensus 277 ~~fdvVIIDEASQ~~E~e~lipL-~~~~~~rlVLiGD~~QLpPvV~s~~~~~~gl~~SLFeRL~~~~--~~~~~L~~QYR 353 (1939)
.+|++|+|||.......+..+.- .......+..|||+.|-- -...|-+...+.++.+.- .+.+.|.++||
T Consensus 212 ~rf~~iLvDE~QDtn~~Q~~ll~~la~~~~~l~~VGD~dQsI-------Y~frGA~~~ni~~f~~df~~~~~i~Le~NyR 284 (655)
T COG0210 212 ARFRYILVDEFQDTNPLQYELLKLLAGNAANLFVVGDDDQSI-------YGFRGADPENILDFEKDFPAAKVIKLEQNYR 284 (655)
T ss_pred hhCCEEEEeCcCCCCHHHHHHHHHHhCCCCCEEEEcCCcccc-------ceeCCCChHHHHHHHhhCCCCcEEEecCCCC
Confidence 57999999999998876433322 222346788999999931 112233444555555432 46889999999
Q ss_pred CChhhhccCcccccCCCCCCCCcccccccccccCCCCCCCCeEEEE-cCCCccccCCCCcCCHHHHHHHHHHHHHHHHcC
Q 035724 354 MHPSISSFPNSYFYDNKIFDSPNVKEKNYEKRFLPGRMYGPYSFIN-VLDGREESIAHSYRNMVEVFVVMKILLNLYKVH 432 (1939)
Q Consensus 354 mhp~I~~f~S~~FY~gkL~~~~~v~~~~~~~~~l~~p~~~p~~Fid-v~~G~Ee~~g~S~~N~~EA~~V~~lV~~L~~~~ 432 (1939)
+.|.|....|...=.++ ....+.+ |.. ...|..-..........||..|...+..+...+
T Consensus 285 St~~Il~~An~~i~~n~-----~r~~k~l--------------~~~~~~~~~~~~~~~~~~~~~ea~~i~~~I~~l~~~~ 345 (655)
T COG0210 285 STPNILAAANKVIANNK-----KRQAKTL--------------RTEVEGSGEKVVLLLANDEEDEARWIASEIDALIEIG 345 (655)
T ss_pred CcHHHHHHHHHHHhcCC-----ccCCCcc--------------eeccCCCCCCceEEeCCChHHHHHHHHHHHHHHHHcC
Confidence 99999999986644111 1111111 111 101111122223456789999999999999887
Q ss_pred CC
Q 035724 433 NV 434 (1939)
Q Consensus 433 ~~ 434 (1939)
..
T Consensus 346 ~~ 347 (655)
T COG0210 346 KV 347 (655)
T ss_pred CC
Confidence 43
No 122
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=97.30 E-value=0.00048 Score=76.08 Aligned_cols=44 Identities=23% Similarity=0.309 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHH
Q 035724 208 TLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLL 251 (1939)
Q Consensus 208 ~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li 251 (1939)
.|.+.|.+|+..++.........+..+|.+|+|||||.++..++
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~ 46 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALI 46 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhh
Confidence 57899999999999754321124678999999999999999876
No 123
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.29 E-value=0.00013 Score=95.91 Aligned_cols=54 Identities=28% Similarity=0.381 Sum_probs=41.3
Q ss_pred CceEEEEeecccCCCCCEEEEeccCCCCCccccccCCCCCCCCCChhHhhhhhHHHHhhhheeeeccccceEEEecccc
Q 035724 952 KQALVLTIVESKGLEFQVIHYTSQCCNSPFKHALFDSTSPGSFPSFNEAKHNVLCSELKQLYVAITRTRQRLWIWENME 1030 (1939)
Q Consensus 952 ~~~lVmTihesKGLEF~~Vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Elk~LYVA~TRAr~~L~I~d~~~ 1030 (1939)
+.+-.||||+|+|.||+.|++.--... ...+ .+++||||+||||++|.|+-+.+
T Consensus 537 ~~ayA~TVHKSQGsEf~~Vilvlp~~~-----------------------~~~l--~R~LlYTaiTRAk~~l~l~~~~~ 590 (615)
T PRK10875 537 ETAWAMTVHKSQGSEFDHTALVLPNQF-----------------------TPVV--TRELVYTAITRARRRLSLYADER 590 (615)
T ss_pred ceEEEEehhhhcCCCCCeEEEECCCcc-----------------------chhh--hhhhHHhhhhhhhceEEEEeCHH
Confidence 467799999999999999998621111 0122 47789999999999999997654
No 124
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.29 E-value=0.0005 Score=90.08 Aligned_cols=96 Identities=22% Similarity=0.239 Sum_probs=56.8
Q ss_pred CCCcEEEEeCCCCCchhHHHHHHHHHHhc----------------------CCcEEEEcccc---hhhHHhh--------
Q 035724 228 HKATVELIWGPPGTGKTKTVSMLLDFCFT----------------------KASLIFCTASS---SYKLHRV-------- 274 (1939)
Q Consensus 228 ~~~~v~LI~GPPGTGKTtti~~li~~~l~----------------------~a~vI~~T~ss---s~~l~~l-------- 274 (1939)
..++..|++||||||||+++..+++.+.- ..+++...+++ .-....+
T Consensus 36 ~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p 115 (559)
T PRK05563 36 KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAP 115 (559)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCc
Confidence 34677899999999999999988855431 23343332221 1111111
Q ss_pred hccCCcEEEEeCCcccchH--HhhccccCCCcc--eEEEEe-ccccCCcceecc
Q 035724 275 AMEQLKFLVIDEAAQLKEV--ESAIPLKLPGIQ--HAILIG-DECQLPAMVESS 323 (1939)
Q Consensus 275 ~~~~fdvVIIDEASQ~~E~--e~lipL~~~~~~--rlVLiG-D~~QLpPvV~s~ 323 (1939)
...++.++||||+.+++.. ..++.....+.. .+|++. ++..++|++.|.
T Consensus 116 ~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SR 169 (559)
T PRK05563 116 SEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSR 169 (559)
T ss_pred ccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhH
Confidence 1245789999999999875 333333222223 344443 667778777543
No 125
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.28 E-value=0.00094 Score=70.03 Aligned_cols=77 Identities=26% Similarity=0.398 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhc-CCcEEEEcccchhh----------------HH
Q 035724 210 NDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFT-KASLIFCTASSSYK----------------LH 272 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~-~a~vI~~T~sss~~----------------l~ 272 (1939)
.+.+..++...+.. ......+|+||||||||+++..+.+.... ...++...+..... ..
T Consensus 3 ~~~~~~~i~~~~~~----~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (151)
T cd00009 3 QEEAIEALREALEL----PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFE 78 (151)
T ss_pred hHHHHHHHHHHHhC----CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHH
Confidence 34455666666553 12467899999999999999999866532 44555543322110 01
Q ss_pred hhhccCCcEEEEeCCccc
Q 035724 273 RVAMEQLKFLVIDEAAQL 290 (1939)
Q Consensus 273 ~l~~~~fdvVIIDEASQ~ 290 (1939)
........++||||+.++
T Consensus 79 ~~~~~~~~~lilDe~~~~ 96 (151)
T cd00009 79 LAEKAKPGVLFIDEIDSL 96 (151)
T ss_pred hhccCCCeEEEEeChhhh
Confidence 112345789999999976
No 126
>PRK09183 transposase/IS protein; Provisional
Probab=97.28 E-value=0.00046 Score=82.13 Aligned_cols=146 Identities=21% Similarity=0.231 Sum_probs=80.5
Q ss_pred CCCCCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHH-HhcCCcEEEEcccchh-hH----------
Q 035724 204 SLSSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDF-CFTKASLIFCTASSSY-KL---------- 271 (1939)
Q Consensus 204 ~~~~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~-~l~~a~vI~~T~sss~-~l---------- 271 (1939)
...+.+|..|...+..+-- . ......+|+||||||||+++.++... +..+..|.+.+..... .+
T Consensus 80 ~~~~~~~~~~i~~L~~~~~-i---~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~ 155 (259)
T PRK09183 80 TFATGAPQKQLQSLRSLSF-I---ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYK 155 (259)
T ss_pred ccCCCCCHHHHHHHhcCCc-h---hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHH
Confidence 3456778877776654421 1 12345689999999999999988744 4556677666543221 10
Q ss_pred Hhh-h-ccCCcEEEEeCCcccchH--H--hhccccC--CCcceEEEEeccccCCcceecccc-ccccccCCHHHHHHhcC
Q 035724 272 HRV-A-MEQLKFLVIDEAAQLKEV--E--SAIPLKL--PGIQHAILIGDECQLPAMVESSVS-GEACLGRSLFERLSNLG 342 (1939)
Q Consensus 272 ~~l-~-~~~fdvVIIDEASQ~~E~--e--~lipL~~--~~~~rlVLiGD~~QLpPvV~s~~~-~~~gl~~SLFeRL~~~~ 342 (1939)
..+ . ....|++||||.+..... . .+..+.. ...+.+|+.+ ++||---.... ....+...+++|+....
T Consensus 156 ~~~~~~~~~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s~iiTs---n~~~~~w~~~~~~d~~~~~ai~dRl~~~~ 232 (259)
T PRK09183 156 TTLQRGVMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGSMILTS---NLPFGQWDQTFAGDAALTSAMLDRLLHHS 232 (259)
T ss_pred HHHHHHhcCCCEEEEcccccCCCChHHHHHHHHHHHHHHhcCcEEEec---CCCHHHHHHHhcCchhHHHHHHHHHhcce
Confidence 001 1 346799999999875332 1 2333321 1122344433 33332111111 12224456889998765
Q ss_pred CccccccccccCCh
Q 035724 343 QAKHLLSIQYRMHP 356 (1939)
Q Consensus 343 ~~~~~L~~QYRmhp 356 (1939)
....+=-..||+..
T Consensus 233 ~~i~~~g~s~R~~~ 246 (259)
T PRK09183 233 HVVQIKGESYRLKQ 246 (259)
T ss_pred EEEeecCCCCcccc
Confidence 55555557788754
No 127
>PRK04195 replication factor C large subunit; Provisional
Probab=97.23 E-value=0.00099 Score=86.17 Aligned_cols=82 Identities=21% Similarity=0.274 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccchh---hHHh----------hh
Q 035724 209 LNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASSSY---KLHR----------VA 275 (1939)
Q Consensus 209 LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~sss~---~l~~----------l~ 275 (1939)
.++.+.+.+...+..-......+..||+||||||||+++..+++.+ ...++..+++... .+.. +.
T Consensus 18 g~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el--~~~~ielnasd~r~~~~i~~~i~~~~~~~sl~ 95 (482)
T PRK04195 18 GNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY--GWEVIELNASDQRTADVIERVAGEAATSGSLF 95 (482)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc--CCCEEEEcccccccHHHHHHHHHHhhccCccc
Confidence 4677777777777643212225678999999999999999998765 2344444332211 0110 00
Q ss_pred ccCCcEEEEeCCcccch
Q 035724 276 MEQLKFLVIDEAAQLKE 292 (1939)
Q Consensus 276 ~~~fdvVIIDEASQ~~E 292 (1939)
.....+||||||..+..
T Consensus 96 ~~~~kvIiIDEaD~L~~ 112 (482)
T PRK04195 96 GARRKLILLDEVDGIHG 112 (482)
T ss_pred CCCCeEEEEecCccccc
Confidence 12567999999987754
No 128
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.22 E-value=0.00068 Score=80.46 Aligned_cols=82 Identities=18% Similarity=0.280 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHhcc-cCCCCCcEEEEeCCCCCchhHHHHHHHHHHhc-CCcEEEEcccchhhHHh------------hh
Q 035724 210 NDSQAQAVLSCLRRT-HCDHKATVELIWGPPGTGKTKTVSMLLDFCFT-KASLIFCTASSSYKLHR------------VA 275 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~-~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~-~a~vI~~T~sss~~l~~------------l~ 275 (1939)
+..++.++..+..-. ..+ ...=.++.||||||||+++++|...+.+ ..+|++.|+..-..-.. ..
T Consensus 85 ~~~~~~~l~~~~~~~~~~~-~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~ 163 (254)
T COG1484 85 PGIDKKALEDLASLVEFFE-RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLR 163 (254)
T ss_pred cchhHHHHHHHHHHHHHhc-cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHH
Confidence 335666666555422 222 2333599999999999999999976665 47888877644321110 12
Q ss_pred -ccCCcEEEEeCCcccch
Q 035724 276 -MEQLKFLVIDEAAQLKE 292 (1939)
Q Consensus 276 -~~~fdvVIIDEASQ~~E 292 (1939)
...+|++||||.+..+.
T Consensus 164 ~l~~~dlLIiDDlG~~~~ 181 (254)
T COG1484 164 ELKKVDLLIIDDIGYEPF 181 (254)
T ss_pred HhhcCCEEEEecccCccC
Confidence 46899999999997644
No 129
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.21 E-value=0.00053 Score=89.14 Aligned_cols=95 Identities=19% Similarity=0.234 Sum_probs=53.5
Q ss_pred CCCcEEEEeCCCCCchhHHHHHHHHHHhc----------------------CCcEEEEcccch---hhHHhh--------
Q 035724 228 HKATVELIWGPPGTGKTKTVSMLLDFCFT----------------------KASLIFCTASSS---YKLHRV-------- 274 (1939)
Q Consensus 228 ~~~~v~LI~GPPGTGKTtti~~li~~~l~----------------------~a~vI~~T~sss---~~l~~l-------- 274 (1939)
..++..|++||||||||+++..+++.+.- +.+++...+++. .....+
T Consensus 36 rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P 115 (605)
T PRK05896 36 KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLP 115 (605)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhch
Confidence 34566799999999999999988865431 122322222211 111111
Q ss_pred hccCCcEEEEeCCcccchH--HhhccccC--CCcceEEEEe-ccccCCcceec
Q 035724 275 AMEQLKFLVIDEAAQLKEV--ESAIPLKL--PGIQHAILIG-DECQLPAMVES 322 (1939)
Q Consensus 275 ~~~~fdvVIIDEASQ~~E~--e~lipL~~--~~~~rlVLiG-D~~QLpPvV~s 322 (1939)
...+..++|||||.+++.. ..++.... ++...+|++. ++..++|++.+
T Consensus 116 ~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~S 168 (605)
T PRK05896 116 TTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIIS 168 (605)
T ss_pred hhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHh
Confidence 1134579999999998764 33433322 2234455544 55566666544
No 130
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.20 E-value=0.00026 Score=92.92 Aligned_cols=54 Identities=31% Similarity=0.506 Sum_probs=41.5
Q ss_pred CceEEEEeecccCCCCCEEEEeccCCCCCccccccCCCCCCCCCChhHhhhhhHHHHhhhheeeeccccceEEEecccc
Q 035724 952 KQALVLTIVESKGLEFQVIHYTSQCCNSPFKHALFDSTSPGSFPSFNEAKHNVLCSELKQLYVAITRTRQRLWIWENME 1030 (1939)
Q Consensus 952 ~~~lVmTihesKGLEF~~Vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Elk~LYVA~TRAr~~L~I~d~~~ 1030 (1939)
+.+-.||||+|+|.|||.|+++-.... . ..+ .+++||||+||||++|.|+-+..
T Consensus 519 ~~ayA~TvHKSQGsef~~Vi~~l~~~~---------------~--------~~l--~r~llYTaiTRAk~~l~i~~~~~ 572 (586)
T TIGR01447 519 ETAFAMTVHKSQGSEFDHVILILPNGN---------------S--------PVL--TRELLYTGITRAKDQLSVWSDKE 572 (586)
T ss_pred ceEEEEEeeHhcCCcCCeEEEECCCCC---------------C--------ccc--ccceeEEEeeehhCeEEEEECHH
Confidence 477799999999999999999632111 0 112 35689999999999999998653
No 131
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.19 E-value=0.00067 Score=89.79 Aligned_cols=107 Identities=20% Similarity=0.273 Sum_probs=61.1
Q ss_pred HHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcC-------------------CcEEEEccc---chhhH
Q 035724 214 AQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTK-------------------ASLIFCTAS---SSYKL 271 (1939)
Q Consensus 214 ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~-------------------a~vI~~T~s---ss~~l 271 (1939)
.+.+..++. .+..++..|++||||||||+++..+++.+.-. .+++-.-+. +....
T Consensus 27 v~~L~~aI~---~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~vd~I 103 (725)
T PRK07133 27 VQTLKNIIK---SNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDEI 103 (725)
T ss_pred HHHHHHHHH---cCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccccCCHHHH
Confidence 344444444 23446778999999999999999888554321 122211111 11111
Q ss_pred Hhh--------hccCCcEEEEeCCcccchH--HhhccccC--CCcceEEEEe-ccccCCcceecc
Q 035724 272 HRV--------AMEQLKFLVIDEAAQLKEV--ESAIPLKL--PGIQHAILIG-DECQLPAMVESS 323 (1939)
Q Consensus 272 ~~l--------~~~~fdvVIIDEASQ~~E~--e~lipL~~--~~~~rlVLiG-D~~QLpPvV~s~ 323 (1939)
..+ ....+.++|||||.+++.. .+++-... ++...+||+. ++..|+|++.+.
T Consensus 104 ReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SR 168 (725)
T PRK07133 104 RELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSR 168 (725)
T ss_pred HHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhh
Confidence 111 1246789999999999864 23333222 2234455555 667788876553
No 132
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.17 E-value=0.00091 Score=86.48 Aligned_cols=110 Identities=19% Similarity=0.193 Sum_probs=59.6
Q ss_pred HHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhc---------------------CCcEEEEcccch---
Q 035724 213 QAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFT---------------------KASLIFCTASSS--- 268 (1939)
Q Consensus 213 Q~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~---------------------~a~vI~~T~sss--- 268 (1939)
|..++.........+..++..|++|||||||||++..+++.+.- +.+++...+++.
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~~~~v 98 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAASNNSV 98 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecccccCCH
Confidence 44444444333222334566799999999999999888865531 122332222111
Q ss_pred hhHHhh--------hccCCcEEEEeCCcccchH--Hhhcccc-CC-CcceEEEEe-ccccCCcceec
Q 035724 269 YKLHRV--------AMEQLKFLVIDEAAQLKEV--ESAIPLK-LP-GIQHAILIG-DECQLPAMVES 322 (1939)
Q Consensus 269 ~~l~~l--------~~~~fdvVIIDEASQ~~E~--e~lipL~-~~-~~~rlVLiG-D~~QLpPvV~s 322 (1939)
.....+ ....+.+|||||+..++.. ..++... .+ +...+|++. ++..++|.+.+
T Consensus 99 d~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~S 165 (504)
T PRK14963 99 EDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILS 165 (504)
T ss_pred HHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhc
Confidence 111111 1245789999999988764 2222222 11 233555554 45567776644
No 133
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.17 E-value=0.00097 Score=78.58 Aligned_cols=83 Identities=20% Similarity=0.260 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHhcccC-CCCCcEEEEeCCCCCchhHHHHHHHHHHhc-CCcEEEEcccchhh-H-------------Hh
Q 035724 210 NDSQAQAVLSCLRRTHC-DHKATVELIWGPPGTGKTKTVSMLLDFCFT-KASLIFCTASSSYK-L-------------HR 273 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~~~-~~~~~v~LI~GPPGTGKTtti~~li~~~l~-~a~vI~~T~sss~~-l-------------~~ 273 (1939)
++.|+.|+..+..-... .......+++||||||||+++.+++..+.. ...|++.|...... + ..
T Consensus 78 ~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l 157 (244)
T PRK07952 78 CEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLL 157 (244)
T ss_pred CchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHH
Confidence 56787787777653211 111245799999999999999999977655 45666665432110 0 00
Q ss_pred hhccCCcEEEEeCCcccch
Q 035724 274 VAMEQLKFLVIDEAAQLKE 292 (1939)
Q Consensus 274 l~~~~fdvVIIDEASQ~~E 292 (1939)
.....+|+|||||.+....
T Consensus 158 ~~l~~~dlLvIDDig~~~~ 176 (244)
T PRK07952 158 NDLSNVDLLVIDEIGVQTE 176 (244)
T ss_pred HHhccCCEEEEeCCCCCCC
Confidence 1124689999999987653
No 134
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=97.14 E-value=0.00097 Score=73.02 Aligned_cols=35 Identities=26% Similarity=0.291 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHH
Q 035724 210 NDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLL 251 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li 251 (1939)
++.|.+++..+++. .-.+|.||+|+|||+.....+
T Consensus 1 t~~Q~~~~~~i~~~-------~~~li~aptGsGKT~~~~~~~ 35 (169)
T PF00270_consen 1 TPLQQEAIEAIISG-------KNVLISAPTGSGKTLAYILPA 35 (169)
T ss_dssp -HHHHHHHHHHHTT-------SEEEEECSTTSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHcC-------CCEEEECCCCCccHHHHHHHH
Confidence 47899999999962 337999999999999876444
No 135
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.14 E-value=0.006 Score=75.90 Aligned_cols=50 Identities=18% Similarity=0.252 Sum_probs=37.7
Q ss_pred EEEecCCCChHHHHHHHHHHHHhHhhhhhhcccccCCCccccccccccCccCCCCcccccceeEEEEecCHHHHHHHHHH
Q 035724 733 SFILGRSGTGKTTILTMKLFQKEKLHHMAMDGFYGVNNSVTLHSSWESGAEEGLGETERPILRQLFVTVSPKLCFAVKQH 812 (1939)
Q Consensus 733 ~~vlGrSGTGKTT~~L~kl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~qvfVT~S~~L~~~vk~~ 812 (1939)
++|-|.||||||.+++..+..+.. . ....+.+|++.|+-|....++.
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~----~-----------------------------~~~~~~~~l~~n~~l~~~l~~~ 50 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQN----S-----------------------------EEGKKVLYLCGNHPLRNKLREQ 50 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhc----c-----------------------------ccCCceEEEEecchHHHHHHHH
Confidence 689999999999999988877600 0 0113478999999998877766
Q ss_pred HHH
Q 035724 813 ISQ 815 (1939)
Q Consensus 813 ~~~ 815 (1939)
+..
T Consensus 51 l~~ 53 (352)
T PF09848_consen 51 LAK 53 (352)
T ss_pred Hhh
Confidence 644
No 136
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.13 E-value=0.00083 Score=86.61 Aligned_cols=44 Identities=23% Similarity=0.118 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHh
Q 035724 212 SQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCF 255 (1939)
Q Consensus 212 sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l 255 (1939)
.|..++....+....+..++..|++|||||||||++..+++.+.
T Consensus 25 Gq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 25 GQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred CcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 35555554433333334456789999999999999999886553
No 137
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.09 E-value=0.002 Score=77.20 Aligned_cols=240 Identities=16% Similarity=0.159 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 035724 1066 EEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCFY 1145 (1939)
Q Consensus 1066 eeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy~ 1145 (1939)
++...+|..++..++++.|..++.++-.... +......|.-.|.+....++++.|.++|.
T Consensus 9 ~~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~--------------------~~~~~~~~~~~a~La~~~~~~~~A~~ay~ 68 (280)
T PF13429_consen 9 EEALRLARLLYQRGDYEKALEVLKKAAQKIA--------------------PPDDPEYWRLLADLAWSLGDYDEAIEAYE 68 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccc--------------------ccccccccccccccccccccccccccccc
Confidence 4556779999999999999999865321000 00112345566777777777777777776
Q ss_pred HhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHc-------cCHHHHHHHHHhcCChHHHHHHHHhhhhc
Q 035724 1146 NLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKG-------KFFSECLAVCSKGKLFEIGLQYMNHWKQH 1218 (1939)
Q Consensus 1146 kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~ka-------gd~dkAI~my~k~k~fd~airLv~q~~d~ 1218 (1939)
++-....+. ...+...+.+ ...+++++|++++.++ .-+..++.++...++|+++.+++++....
T Consensus 69 ~l~~~~~~~--------~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~ 139 (280)
T PF13429_consen 69 KLLASDKAN--------PQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEEL 139 (280)
T ss_dssp ----------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-
T ss_pred ccccccccc--------cccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 654443321 1223444444 4667777777666554 22455677777888888888887753321
Q ss_pred ccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHHhhcCHHHHHHHHHhcCC
Q 035724 1219 ADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRSVDLMRKFLKSLSCFDDLLVLEEESGN 1298 (1939)
Q Consensus 1219 l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s~eeA~~~L~k~~~ldea~ell~e~G~ 1298 (1939)
.. ..-...++...+..|.+.|+++.|++.++..=..+-. .......++-++++.|+
T Consensus 140 ~~-------------------~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-----~~~~~~~l~~~li~~~~ 195 (280)
T PF13429_consen 140 PA-------------------APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD-----DPDARNALAWLLIDMGD 195 (280)
T ss_dssp T----------------------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT------HHHHHHHHHHHCTTCH
T ss_pred cC-------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHCCC
Confidence 00 0012234445577788888888888776532111100 00112233455667777
Q ss_pred HHHHHHHHHH---c----CCHH-HHHHHHHHhCCHHHHHHHHHHHh------------hhhccccCCCCCCCCcchhhHH
Q 035724 1299 FMDAANIARL---R----GDIF-LAVDLLQKAGCFKEACNVTLNHV------------ISNSLWSPGSKGWPLKQFTKKK 1358 (1939)
Q Consensus 1299 feEAa~Lak~---~----Gk~~-eAi~my~kAG~~~eA~rva~~~~------------~~~~l~~~~~~~~~~~~~~~ae 1358 (1939)
+++|..+.+. . ..+. .-+.+|..-|+.++|...+.+.. .+++|+..++ +.+|.
T Consensus 196 ~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~-------~~~A~ 268 (280)
T PF13429_consen 196 YDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGR-------KDEAL 268 (280)
T ss_dssp HHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred hHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccc-------ccccc
Confidence 7765333321 1 2222 22555666677777766666552 5566655553 46666
Q ss_pred HHHHHHH
Q 035724 1359 ELLEKAK 1365 (1939)
Q Consensus 1359 ~ll~~A~ 1365 (1939)
.+.-+|-
T Consensus 269 ~~~~~~~ 275 (280)
T PF13429_consen 269 RLRRQAL 275 (280)
T ss_dssp -------
T ss_pred ccccccc
Confidence 6665553
No 138
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.08 E-value=0.002 Score=79.01 Aligned_cols=43 Identities=26% Similarity=0.404 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhc
Q 035724 210 NDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFT 256 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~ 256 (1939)
++...+.+..++... ..+..+++||||||||+++..+.+.+..
T Consensus 20 ~~~~~~~L~~~~~~~----~~~~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 20 QDEVVERLSRAVDSP----NLPHLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred CHHHHHHHHHHHhCC----CCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 555666666666532 2235799999999999999999876653
No 139
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.08 E-value=0.0015 Score=79.22 Aligned_cols=83 Identities=25% Similarity=0.318 Sum_probs=48.2
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEccc-chhhHHh--hhccCCcEEEEeCCcccchH--HhhccccCCCc
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTAS-SSYKLHR--VAMEQLKFLVIDEAAQLKEV--ESAIPLKLPGI 304 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~s-ss~~l~~--l~~~~fdvVIIDEASQ~~E~--e~lipL~~~~~ 304 (1939)
.+..+|+||||||||+++..+...+-....++.++.. ....+.. ......++++|||+..++.. +.+..+.. ..
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~-~~ 108 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAILTNLEEGDVLFIDEIHRLSPAVEELLYPAME-DF 108 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHHHHHHhcccCCEEEEehHhhhCHHHHHHhhHHHh-hh
Confidence 3457999999999999999988766444333332211 1111111 12345789999999988765 23333322 22
Q ss_pred ceEEEEecc
Q 035724 305 QHAILIGDE 313 (1939)
Q Consensus 305 ~rlVLiGD~ 313 (1939)
...+++|+.
T Consensus 109 ~~~~v~~~~ 117 (305)
T TIGR00635 109 RLDIVIGKG 117 (305)
T ss_pred heeeeeccC
Confidence 334555654
No 140
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.08 E-value=0.001 Score=87.89 Aligned_cols=93 Identities=22% Similarity=0.233 Sum_probs=53.9
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHhcCC------------------------cEEEEcc---cchhhHHhh--------
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCFTKA------------------------SLIFCTA---SSSYKLHRV-------- 274 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l~~a------------------------~vI~~T~---sss~~l~~l-------- 274 (1939)
.+-.|++||||||||+++..+++.+.-.. +++.... .+......+
T Consensus 38 ~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p 117 (620)
T PRK14948 38 APAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAP 117 (620)
T ss_pred CceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhCh
Confidence 45679999999999999999986654311 2221111 111111111
Q ss_pred hccCCcEEEEeCCcccchH--HhhccccCCCcceEEEEe---ccccCCcceec
Q 035724 275 AMEQLKFLVIDEAAQLKEV--ESAIPLKLPGIQHAILIG---DECQLPAMVES 322 (1939)
Q Consensus 275 ~~~~fdvVIIDEASQ~~E~--e~lipL~~~~~~rlVLiG---D~~QLpPvV~s 322 (1939)
....+.++|||||.+++.. ..++.....+..++++|+ |+..+.|++.+
T Consensus 118 ~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrS 170 (620)
T PRK14948 118 VQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIIS 170 (620)
T ss_pred hcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHh
Confidence 1245689999999999874 344443332333444443 66667666544
No 141
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.07 E-value=0.0012 Score=68.60 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=18.2
Q ss_pred EEEeCCCCCchhHHHHHHHHH
Q 035724 233 ELIWGPPGTGKTKTVSMLLDF 253 (1939)
Q Consensus 233 ~LI~GPPGTGKTtti~~li~~ 253 (1939)
.+|.||||||||+++..++..
T Consensus 3 ~~i~~~~G~GKT~~~~~~~~~ 23 (144)
T cd00046 3 VLLAAPTGSGKTLAALLPILE 23 (144)
T ss_pred EEEECCCCCchhHHHHHHHHH
Confidence 589999999999999888733
No 142
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.07 E-value=0.00096 Score=75.08 Aligned_cols=61 Identities=25% Similarity=0.394 Sum_probs=39.9
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHh-cCCcEEEEcccchhhHH------------hhhccCCcEEEEeCCcccch
Q 035724 232 VELIWGPPGTGKTKTVSMLLDFCF-TKASLIFCTASSSYKLH------------RVAMEQLKFLVIDEAAQLKE 292 (1939)
Q Consensus 232 v~LI~GPPGTGKTtti~~li~~~l-~~a~vI~~T~sss~~l~------------~l~~~~fdvVIIDEASQ~~E 292 (1939)
-.+|+||||||||+++.+++..+. .+..+.+.+...-.... .......|++||||-+....
T Consensus 49 ~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~~~~ 122 (178)
T PF01695_consen 49 NLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGYEPL 122 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTSS--
T ss_pred EEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccccccEecccccceeee
Confidence 369999999999999999996555 45566666443221110 01235789999999997653
No 143
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.06 E-value=0.02 Score=73.76 Aligned_cols=215 Identities=15% Similarity=0.123 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcC------hHHHHHHHHHHHHcCCHHHHHHHHHHccC-----
Q 035724 1123 NLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERRE------EPELEKAGECFFLAGCYKLAADVYAKGKF----- 1191 (1939)
Q Consensus 1123 ~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~------e~~~~qaAe~fE~~G~y~eAAelY~kagd----- 1191 (1939)
.+...+.+|...|++++|...+..+-+. ..+..+ .......|..|-..++|.+|+.+|.++=.
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~------l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRI------LEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH------HHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 3455888898899999988877655433 211111 12355789999999999999999998822
Q ss_pred -----------HHHHHHHHHhcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCH
Q 035724 1192 -----------FSECLAVCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDK 1260 (1939)
Q Consensus 1192 -----------~dkAI~my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~ 1260 (1939)
+.....+|.+.+.|++|-.+++.-.+-.... ......+ ....+...+.-+...++.
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~---------~~~~~~~----v~~~l~~~~~~~~~~~~~ 341 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL---------LGASHPE----VAAQLSELAAILQSMNEY 341 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh---------hccChHH----HHHHHHHHHHHHHHhcch
Confidence 2222335677888888888877322211000 0000011 112233335566677777
Q ss_pred HHHHHHHHHhccHHHHHHHH-HhhcCHH-HHHHHHHhcCCHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHHhhh
Q 035724 1261 KSMMKFVKSFRSVDLMRKFL-KSLSCFD-DLLVLEEESGNFMDAANIARLRGDIFLAVDLLQKAGCFKEACNVTLNHVIS 1338 (1939)
Q Consensus 1261 k~A~~~~~~~~s~eeA~~~L-~k~~~ld-ea~ell~e~G~feEAa~Lak~~Gk~~eAi~my~kAG~~~eA~rva~~~~~~ 1338 (1939)
+.|...+.. +..++ ...+.-. ..+.+ +..-+.++...|++.||.+||.+|=...++..=-..|-+.
T Consensus 342 Eea~~l~q~------al~i~~~~~g~~~~~~a~~------~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~ 409 (508)
T KOG1840|consen 342 EEAKKLLQK------ALKIYLDAPGEDNVNLAKI------YANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVG 409 (508)
T ss_pred hHHHHHHHH------HHHHHHhhccccchHHHHH------HHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhh
Confidence 777765551 11111 1112111 11111 1112233444455555555554321111111111122467
Q ss_pred hccccCCCCCCCCcchhhHHHHHHHHHhHh
Q 035724 1339 NSLWSPGSKGWPLKQFTKKKELLEKAKSLA 1368 (1939)
Q Consensus 1339 ~~l~~~~~~~~~~~~~~~ae~ll~~A~~~~ 1368 (1939)
.++|--|...-+.+++.+|+.||.+|+...
T Consensus 410 ~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 410 KPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 778888888888899999999999999844
No 144
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.05 E-value=0.002 Score=74.89 Aligned_cols=82 Identities=12% Similarity=0.178 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHh-cCCcEEEEcccchhhHHhhhccCCcEEEEeC
Q 035724 208 TLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCF-TKASLIFCTASSSYKLHRVAMEQLKFLVIDE 286 (1939)
Q Consensus 208 ~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l-~~a~vI~~T~sss~~l~~l~~~~fdvVIIDE 286 (1939)
+-|.....++....... ...+..+|+||||||||+++..+..... .+..+++.++....... ......++|||||
T Consensus 23 ~~~~~~~~~l~~~~~~~---~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~liiDd 98 (227)
T PRK08903 23 GENAELVARLRELAAGP---VADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLAF-DFDPEAELYAVDD 98 (227)
T ss_pred CCcHHHHHHHHHHHhcc---CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHHH-hhcccCCEEEEeC
Confidence 45666666666655421 2245679999999999999999986653 44566665554332221 1223578999999
Q ss_pred CcccchH
Q 035724 287 AAQLKEV 293 (1939)
Q Consensus 287 ASQ~~E~ 293 (1939)
+..++..
T Consensus 99 i~~l~~~ 105 (227)
T PRK08903 99 VERLDDA 105 (227)
T ss_pred hhhcCch
Confidence 9877643
No 145
>PRK12377 putative replication protein; Provisional
Probab=97.05 E-value=0.0012 Score=77.92 Aligned_cols=80 Identities=24% Similarity=0.248 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHhcc--cCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcC-CcEEEEcccchhhH-------------Hh
Q 035724 210 NDSQAQAVLSCLRRT--HCDHKATVELIWGPPGTGKTKTVSMLLDFCFTK-ASLIFCTASSSYKL-------------HR 273 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~--~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~-a~vI~~T~sss~~l-------------~~ 273 (1939)
++.|+.|+..+..-. ... .....+|+||||||||+++.+++..+... ..|++.|....... ..
T Consensus 80 ~~~~~~a~~~a~~~a~~~~~-~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l 158 (248)
T PRK12377 80 NDGQRYALSQAKSIADELMT-GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFL 158 (248)
T ss_pred ChhHHHHHHHHHHHHHHHHh-cCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHH
Confidence 466766665544321 111 12456999999999999999999776654 55665544321110 00
Q ss_pred hhccCCcEEEEeCCccc
Q 035724 274 VAMEQLKFLVIDEAAQL 290 (1939)
Q Consensus 274 l~~~~fdvVIIDEASQ~ 290 (1939)
-.....|+|||||.+..
T Consensus 159 ~~l~~~dLLiIDDlg~~ 175 (248)
T PRK12377 159 QELCKVDLLVLDEIGIQ 175 (248)
T ss_pred HHhcCCCEEEEcCCCCC
Confidence 12357899999999655
No 146
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.04 E-value=0.0015 Score=85.89 Aligned_cols=95 Identities=23% Similarity=0.259 Sum_probs=55.6
Q ss_pred CCCcEEEEeCCCCCchhHHHHHHHHHHhcC----------------------CcEEEEccc---chhhHHhh--------
Q 035724 228 HKATVELIWGPPGTGKTKTVSMLLDFCFTK----------------------ASLIFCTAS---SSYKLHRV-------- 274 (1939)
Q Consensus 228 ~~~~v~LI~GPPGTGKTtti~~li~~~l~~----------------------a~vI~~T~s---ss~~l~~l-------- 274 (1939)
..++..|++||||||||+++..+++.+.-. .+++-.... +...+..+
T Consensus 36 rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P 115 (709)
T PRK08691 36 RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAP 115 (709)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhh
Confidence 345667999999999999999888654321 122211111 11111111
Q ss_pred hccCCcEEEEeCCcccchHH--hhcccc--CCCcceEEEEe-ccccCCcceec
Q 035724 275 AMEQLKFLVIDEAAQLKEVE--SAIPLK--LPGIQHAILIG-DECQLPAMVES 322 (1939)
Q Consensus 275 ~~~~fdvVIIDEASQ~~E~e--~lipL~--~~~~~rlVLiG-D~~QLpPvV~s 322 (1939)
....+.++||||+.+++... .++-.. .++...+||+. |...+++++.|
T Consensus 116 ~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrS 168 (709)
T PRK08691 116 TAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS 168 (709)
T ss_pred hhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHH
Confidence 12457899999999998642 233222 12445677765 77777776643
No 147
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.04 E-value=0.00096 Score=87.81 Aligned_cols=109 Identities=17% Similarity=0.224 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcC----------------------CcEEEEcccc--
Q 035724 212 SQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTK----------------------ASLIFCTASS-- 267 (1939)
Q Consensus 212 sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~----------------------a~vI~~T~ss-- 267 (1939)
...+.+..++.. +..++..|++||||||||+++..+++.+.-. .+++.....+
T Consensus 23 ~v~~~L~~~i~~---~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s~~ 99 (576)
T PRK14965 23 HVSRTLQNAIDT---GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGASNT 99 (576)
T ss_pred HHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccCcc
Confidence 334445555542 3446778999999999999999888655321 1232221111
Q ss_pred -hhhHHhh--------hccCCcEEEEeCCcccchH--HhhccccC--CCcceEEEEe-ccccCCcceecc
Q 035724 268 -SYKLHRV--------AMEQLKFLVIDEAAQLKEV--ESAIPLKL--PGIQHAILIG-DECQLPAMVESS 323 (1939)
Q Consensus 268 -s~~l~~l--------~~~~fdvVIIDEASQ~~E~--e~lipL~~--~~~~rlVLiG-D~~QLpPvV~s~ 323 (1939)
.-....+ ....+.++||||+.+++.. ..++.... ++...+||+. ++..|++++.|.
T Consensus 100 ~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SR 169 (576)
T PRK14965 100 GVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSR 169 (576)
T ss_pred CHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHh
Confidence 1111111 1245789999999999874 34443332 2344566655 567788777543
No 148
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.04 E-value=0.0014 Score=83.16 Aligned_cols=83 Identities=24% Similarity=0.388 Sum_probs=50.7
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccchhhHHhh--------hccCCcEEEEeCCcccchH--Hhhccc
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASSSYKLHRV--------AMEQLKFLVIDEAAQLKEV--ESAIPL 299 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~sss~~l~~l--------~~~~fdvVIIDEASQ~~E~--e~lipL 299 (1939)
.+..+|+|||||||||++..+.+..-.....+-++..+....... ......+|||||+..++.. +.+++.
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~ 115 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPH 115 (413)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccccHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHH
Confidence 345688999999999999988865533222222222222111111 1236789999999998765 445554
Q ss_pred cCCCcceEEEEeccc
Q 035724 300 KLPGIQHAILIGDEC 314 (1939)
Q Consensus 300 ~~~~~~rlVLiGD~~ 314 (1939)
.. ...++++|-..
T Consensus 116 le--~~~iilI~att 128 (413)
T PRK13342 116 VE--DGTITLIGATT 128 (413)
T ss_pred hh--cCcEEEEEeCC
Confidence 43 25677777543
No 149
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=97.04 E-value=0.033 Score=71.79 Aligned_cols=181 Identities=12% Similarity=0.016 Sum_probs=109.6
Q ss_pred HhHHHHHHHHHHHHHcC-CHHHHHHHHHHhCCHHHHHHHHHHhcC--hHHHHHHHHHHHHcCCHHHHHHHHHHccCHHHH
Q 035724 1119 QANVNLREAAKIFEAIG-KADSAAKCFYNLGEYERAGRIYLERRE--EPELEKAGECFFLAGCYKLAADVYAKGKFFSEC 1195 (1939)
Q Consensus 1119 ea~~~y~eAA~lYe~~G-~~~kAaecy~kag~~~~A~eLY~e~~~--e~~~~qaAe~fE~~G~y~eAAelY~kagd~dkA 1195 (1939)
.+.+.|..|..+.-+.. -.++-+++-++-.-|+.+..+|+--.. +-.+...|..+...+.+-+||.+|...|.+..|
T Consensus 875 ~yl~~ye~ALghl~E~~n~~~Ev~~yi~~hdly~~~l~lyrYd~e~Qk~~~nifa~~l~~n~~~~~aa~aye~~gK~~Ea 954 (1243)
T COG5290 875 NYLSIYESALGHLNEDLNVIREVMKYICRHDLYDFLLLLYRYDGELQKFKINIFAGNLVDNLYHISAAKAYEVEGKYIEA 954 (1243)
T ss_pred hhHHHHHHHHHhhHhHHHHHHHHHHHHHhccchHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 35556777777766543 345556666677788888888875322 223667788888888888888888888888888
Q ss_pred HHHHHhcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHH
Q 035724 1196 LAVCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRSVDL 1275 (1939)
Q Consensus 1196 I~my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s~ee 1275 (1939)
+.+|..+++|.++.-+..|=.. .+....++......-.-+.+++|...+..
T Consensus 955 ~gay~sA~mwrec~si~~q~~~-------------------~e~~~~AE~L~S~l~ve~R~~~da~~i~l---------- 1005 (1243)
T COG5290 955 HGAYDSALMWRECGSISTQEKG-------------------YEFNLCAELLPSDLLVEFRKAGDAEKILL---------- 1005 (1243)
T ss_pred HHHHHHHHHHHHHhhHHhhhcc-------------------hHHHHHHHhhhhhHHHHHHHhcCHHHHHH----------
Confidence 8888888888887766653110 01111111111111122344554333321
Q ss_pred HHHHHHhhcCHHHHHHHHHhcCCHHHHHHHHHHc-------------------CCHHHHHHHHHHhCCHHHHHHHHH
Q 035724 1276 MRKFLKSLSCFDDLLVLEEESGNFMDAANIARLR-------------------GDIFLAVDLLQKAGCFKEACNVTL 1333 (1939)
Q Consensus 1276 A~~~L~k~~~ldea~ell~e~G~feEAa~Lak~~-------------------Gk~~eAi~my~kAG~~~eA~rva~ 1333 (1939)
.-...+.+++-+.|+..++.+|+..|+.. |.+..|++.|.+.+...++.+++.
T Consensus 1006 -----~yl~N~~eava~~ckgs~y~ea~~~a~~s~~~e~~k~~~~~~LgE~Fg~~~El~ad~~~qikSq~~rlrvlr 1077 (1243)
T COG5290 1006 -----TYLENLYEAVAMDCKGSEYREAFCEAMVSRLVESEKHYEAGQLGEEFGGKPELAADEYVQIKSQGDRLRVLR 1077 (1243)
T ss_pred -----HHHhCHHHHHHHHcccccchHHHHHHHHhhhhhHHHHhhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHh
Confidence 12233444445555555666665544432 677888888888888888887764
No 150
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.03 E-value=0.01 Score=75.70 Aligned_cols=148 Identities=11% Similarity=0.056 Sum_probs=104.9
Q ss_pred cCCHHHHHH-HHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHh--hhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHH
Q 035724 1062 ASSPEEWKS-RGIKLFHEHNYDMATICFEKAKDSYWEGRSKAT--GLKATADRCRSSNPKQANVNLREAAKIFEAIGKAD 1138 (1939)
Q Consensus 1062 ~StpeeW~~-lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~--~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~ 1138 (1939)
.+-|.+++. .+.++.++|..+.|++.-. |. ..++.-|. +..+.+.++... ......|+..++...+.|+++
T Consensus 291 ~~i~~~~~~~i~~fL~~~G~~e~AL~~~~---D~-~~rFeLAl~lg~L~~A~~~a~~--~~~~~~W~~Lg~~AL~~g~~~ 364 (443)
T PF04053_consen 291 PNIPKDQGQSIARFLEKKGYPELALQFVT---DP-DHRFELALQLGNLDIALEIAKE--LDDPEKWKQLGDEALRQGNIE 364 (443)
T ss_dssp GG--HHHHHHHHHHHHHTT-HHHHHHHSS----H-HHHHHHHHHCT-HHHHHHHCCC--CSTHHHHHHHHHHHHHTTBHH
T ss_pred ccCChhHHHHHHHHHHHCCCHHHHHhhcC---Ch-HHHhHHHHhcCCHHHHHHHHHh--cCcHHHHHHHHHHHHHcCCHH
Confidence 344555544 4555555688888886533 32 22333333 333444333222 224568999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHHHHHhcCChHHHHHHHHhh
Q 035724 1139 SAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKFFSECLAVCSKGKLFEIGLQYMNHW 1215 (1939)
Q Consensus 1139 kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd~dkAI~my~k~k~fd~airLv~q~ 1215 (1939)
.|.+||.++++++...=+|.-..+...+++.|+..+..|++.-|-.++...|+++++++++.+.+.+.+|.-.++-|
T Consensus 365 lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv~lL~~~~~~~~A~~~A~ty 441 (443)
T PF04053_consen 365 LAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQAALLLGDVEECVDLLIETGRLPEAALFARTY 441 (443)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred HHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHHHHHcCCHHHHHHHHHHcCCchHHHHHHHhc
Confidence 99999999999999999988755567799999999999999999999999999999999999999999888777643
No 151
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.01 E-value=0.0014 Score=78.13 Aligned_cols=61 Identities=30% Similarity=0.282 Sum_probs=37.4
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHHh-----cCCcEEEEcccch---------hhH-HhhhccCCcEEEEeCCcccc
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFCF-----TKASLIFCTASSS---------YKL-HRVAMEQLKFLVIDEAAQLK 291 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~l-----~~a~vI~~T~sss---------~~l-~~l~~~~fdvVIIDEASQ~~ 291 (1939)
.-.+++||||||||+++..+.+.+. ....++.+.++.. ... ..+......+++|||+..+.
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~ 118 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKALGGVLFIDEAYSLA 118 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHHhccCCEEEEechhhhc
Confidence 3468999999999999998876542 2234444332211 000 11222234799999998865
No 152
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.01 E-value=0.0013 Score=88.12 Aligned_cols=83 Identities=22% Similarity=0.368 Sum_probs=51.1
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccchhhHH----h----h-hccCCcEEEEeCCcccchH--Hhhccc
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASSSYKLH----R----V-AMEQLKFLVIDEAAQLKEV--ESAIPL 299 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~sss~~l~----~----l-~~~~fdvVIIDEASQ~~E~--e~lipL 299 (1939)
+..+|+|||||||||++..+.+.+-.....+-++..+..... . + .....+++||||+..++.. ..+++.
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~ 132 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAGVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPW 132 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhhhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHH
Confidence 345999999999999999888654322222222222211110 0 1 1135679999999988765 455555
Q ss_pred cCCCcceEEEEecccc
Q 035724 300 KLPGIQHAILIGDECQ 315 (1939)
Q Consensus 300 ~~~~~~rlVLiGD~~Q 315 (1939)
.. ..+++++|+...
T Consensus 133 lE--~g~IiLI~aTTe 146 (725)
T PRK13341 133 VE--NGTITLIGATTE 146 (725)
T ss_pred hc--CceEEEEEecCC
Confidence 43 367899997654
No 153
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.01 E-value=0.059 Score=68.29 Aligned_cols=76 Identities=13% Similarity=-0.063 Sum_probs=42.6
Q ss_pred HHHHHhcCCHHHHHHHHHHc----CCHHHHHHHHH--HhCCHHHHHHHHHHHh-----hhhccccCCCCCCCCcchhhHH
Q 035724 1290 LVLEEESGNFMDAANIARLR----GDIFLAVDLLQ--KAGCFKEACNVTLNHV-----ISNSLWSPGSKGWPLKQFTKKK 1358 (1939)
Q Consensus 1290 ~ell~e~G~feEAa~Lak~~----Gk~~eAi~my~--kAG~~~eA~rva~~~~-----~~~~l~~~~~~~~~~~~~~~ae 1358 (1939)
+..+...|+.++|.++.++. ..+ +.+.+|. ..++.++|.+.++... -+..+..-|+.+...+++.+|+
T Consensus 270 A~~l~~~g~~~~A~~~L~~~l~~~~~~-~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~ 348 (398)
T PRK10747 270 AEHLIECDDHDTAQQIILDGLKRQYDE-RLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEAS 348 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45555666666665544322 222 2333333 3466666666666553 3445555566666666777777
Q ss_pred HHHHHHHh
Q 035724 1359 ELLEKAKS 1366 (1939)
Q Consensus 1359 ~ll~~A~~ 1366 (1939)
+.|.+|-.
T Consensus 349 ~~le~al~ 356 (398)
T PRK10747 349 LAFRAALK 356 (398)
T ss_pred HHHHHHHh
Confidence 77777766
No 154
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.98 E-value=0.0055 Score=78.52 Aligned_cols=228 Identities=13% Similarity=0.047 Sum_probs=130.3
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHhCCcchHH-------------HHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcC
Q 035724 1069 KSRGIKLFHEHNYDMATICFEKAKDSYWEG-------------RSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIG 1135 (1939)
Q Consensus 1069 ~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~-------------l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G 1135 (1939)
-+.|..+|...+|++|.++|..+.+..... +.+.+.+-..++++...++. ....|--++..|---+
T Consensus 357 ~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~-sPesWca~GNcfSLQk 435 (638)
T KOG1126|consen 357 SQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPN-SPESWCALGNCFSLQK 435 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCC-CcHHHHHhcchhhhhh
Confidence 788999999999999999999987632221 11111122223444444443 4556888899998889
Q ss_pred CHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHc----cCHHHHH----HHHHhcCChHH
Q 035724 1136 KADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKG----KFFSECL----AVCSKGKLFEI 1207 (1939)
Q Consensus 1136 ~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~ka----gd~dkAI----~my~k~k~fd~ 1207 (1939)
+++.|++||.++-+.+.-... .+.-+|..+-....|+.|+.+|.+| +..=.|+ -.|.|.+.++.
T Consensus 436 dh~~Aik~f~RAiQldp~faY--------ayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~ 507 (638)
T KOG1126|consen 436 DHDTAIKCFKRAIQLDPRFAY--------AYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEF 507 (638)
T ss_pred HHHHHHHHHHHhhccCCccch--------hhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhH
Confidence 999999999888766553322 2334455666667788888888877 2222232 24556666666
Q ss_pred HHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHHhhcCHH
Q 035724 1208 GLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRSVDLMRKFLKSLSCFD 1287 (1939)
Q Consensus 1208 airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s~eeA~~~L~k~~~ld 1287 (1939)
|.-..++-.+--+ ...-.+-.+...|.+.|+.+.|..++...=..|. ...|.+ +
T Consensus 508 Ae~~fqkA~~INP---------------------~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~---~- 561 (638)
T KOG1126|consen 508 AEFHFQKAVEINP---------------------SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCK---Y- 561 (638)
T ss_pred HHHHHHhhhcCCc---------------------cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhH---H-
Confidence 6655553221111 1111223456677888888877776653222221 000110 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHc--CCHHH------HHHHHHHhCCHHHHHHH
Q 035724 1288 DLLVLEEESGNFMDAANIARLR--GDIFL------AVDLLQKAGCFKEACNV 1331 (1939)
Q Consensus 1288 ea~ell~e~G~feEAa~Lak~~--Gk~~e------Ai~my~kAG~~~eA~rv 1331 (1939)
.-+.++...+++++|+...+.- =-|+| -++.|.+-|+.+.|++-
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~ 613 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLH 613 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHh
Confidence 1135556667777776655432 12222 24455556666666443
No 155
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=96.96 E-value=0.0025 Score=78.85 Aligned_cols=53 Identities=19% Similarity=0.146 Sum_probs=42.1
Q ss_pred EEEeecccCCCCCEEEEeccCCCCCccccccCCCCCCCCCChhHhhhhhHHHHhhhheeeeccccceEEEeccccc
Q 035724 956 VLTIVESKGLEFQVIHYTSQCCNSPFKHALFDSTSPGSFPSFNEAKHNVLCSELKQLYVAITRTRQRLWIWENMEE 1031 (1939)
Q Consensus 956 VmTihesKGLEF~~Vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Elk~LYVA~TRAr~~L~I~d~~~~ 1031 (1939)
+.+|+.|||+|++.|++++.-.-+ -.|..-++.||+||||.|--+-++-..|+
T Consensus 526 is~IyrAKGnEapfV~aL~a~~ls-----------------------~~la~~RN~LfTamTRSkawvrv~glgpq 578 (660)
T COG3972 526 ISRIYRAKGNEAPFVYALGAAYLS-----------------------TGLADWRNILFTAMTRSKAWVRVVGLGPQ 578 (660)
T ss_pred eeeehhccCCCCcEEEEehhhhhC-----------------------ccchhHHhHHHHHHhhhhhhhhhhccChH
Confidence 679999999999999998753330 13556788999999999987777776665
No 156
>PF13173 AAA_14: AAA domain
Probab=96.96 E-value=0.0017 Score=68.89 Aligned_cols=84 Identities=20% Similarity=0.320 Sum_probs=53.7
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccchhh-----------HHhhhccCCcEEEEeCCcccchHHhhcc
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASSSYK-----------LHRVAMEQLKFLVIDEAAQLKEVESAIP 298 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~sss~~-----------l~~l~~~~fdvVIIDEASQ~~E~e~lip 298 (1939)
.++.+|.||.|+||||++..+++.......++......... +.........+|||||+..++.....+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~~~~~~~lk 81 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYLPDWEDALK 81 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhhccHHHHHH
Confidence 46889999999999999999997776444455443322110 0001112568999999999987654444
Q ss_pred ccCC--CcceEEEEecc
Q 035724 299 LKLP--GIQHAILIGDE 313 (1939)
Q Consensus 299 L~~~--~~~rlVLiGD~ 313 (1939)
.... +.-++|+.|-.
T Consensus 82 ~l~d~~~~~~ii~tgS~ 98 (128)
T PF13173_consen 82 FLVDNGPNIKIILTGSS 98 (128)
T ss_pred HHHHhccCceEEEEccc
Confidence 3221 23577887753
No 157
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.95 E-value=0.0014 Score=85.75 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=22.2
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHh
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCF 255 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l 255 (1939)
.+..|++||||||||+++..+++.++
T Consensus 38 ~ha~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 38 APAYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcc
Confidence 56779999999999999998886554
No 158
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=0.051 Score=71.75 Aligned_cols=212 Identities=14% Similarity=0.170 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH-HhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC---HHHHH
Q 035724 1121 NVNLREAAKIFEAIGKADSAAKCFY-NLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF---FSECL 1196 (1939)
Q Consensus 1121 ~~~y~eAA~lYe~~G~~~kAaecy~-kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd---~dkAI 1196 (1939)
...|.||-.+|.+-+....|++..+ .-+..++|.+...+.-....|.+.|.+--..|.-.+|.+-|.|+.| |...|
T Consensus 1061 ~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyikadDps~y~eVi 1140 (1666)
T KOG0985|consen 1061 NQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKADDPSNYLEVI 1140 (1666)
T ss_pred hhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhcCCcHHHHHHH
Confidence 3458889999999888899988876 4688899999887733445699999999999999999999999987 56788
Q ss_pred HHHHhcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHH-------HHHHHHHHHHhcCCHHHHHHHHHH
Q 035724 1197 AVCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQE-------FLEKCAIHYYGLQDKKSMMKFVKS 1269 (1939)
Q Consensus 1197 ~my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~-------~le~aa~hy~kagD~k~A~~~~~~ 1269 (1939)
+.+.+.+.|++.++++..-++... ++.+-++-.....+.....+++.. .+.+.+..+.+.|.+++|.-+|..
T Consensus 1141 ~~a~~~~~~edLv~yL~MaRkk~~-E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~ 1219 (1666)
T KOG0985|consen 1141 DVASRTGKYEDLVKYLLMARKKVR-EPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSN 1219 (1666)
T ss_pred HHHHhcCcHHHHHHHHHHHHHhhc-CccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHH
Confidence 899999999999999874333221 111110111111122222222221 234556666666777777777766
Q ss_pred hccHHHHHHHHHhhcCHHHHHHHHHhcCC---HHHH---------HHHHHHc--------CCHHHHHHHHHHhCCHHHHH
Q 035724 1270 FRSVDLMRKFLKSLSCFDDLLVLEEESGN---FMDA---------ANIARLR--------GDIFLAVDLLQKAGCFKEAC 1329 (1939)
Q Consensus 1270 ~~s~eeA~~~L~k~~~ldea~ell~e~G~---feEA---------a~Lak~~--------Gk~~eAi~my~kAG~~~eA~ 1329 (1939)
...|..-..-|...|.+..+++.+.++.. |.+- |++|+-. +...+-++.|...|-|++-.
T Consensus 1220 vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElI 1299 (1666)
T KOG0985|consen 1220 VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELI 1299 (1666)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHH
Confidence 66666544445556666666665544332 2222 3444433 44556677777777777765
Q ss_pred HHHH
Q 035724 1330 NVTL 1333 (1939)
Q Consensus 1330 rva~ 1333 (1939)
.+++
T Consensus 1300 sl~E 1303 (1666)
T KOG0985|consen 1300 SLLE 1303 (1666)
T ss_pred HHHH
Confidence 5543
No 159
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.0091 Score=75.28 Aligned_cols=82 Identities=20% Similarity=0.269 Sum_probs=67.0
Q ss_pred HHHHHHHHHcCCHHHH----------HHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccCHHH
Q 035724 1125 REAAKIFEAIGKADSA----------AKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKFFSE 1194 (1939)
Q Consensus 1125 ~eAA~lYe~~G~~~kA----------aecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd~dk 1194 (1939)
.++|..+++.|..++| -++-.++|+++.|.++..+.-.+.+|++.|+++-.+|++..|.||+.++.++..
T Consensus 618 t~va~Fle~~g~~e~AL~~s~D~d~rFelal~lgrl~iA~~la~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~ 697 (794)
T KOG0276|consen 618 TKVAHFLESQGMKEQALELSTDPDQRFELALKLGRLDIAFDLAVEANSEVKWRQLGDAALSAGELPLASECFLRARDLGS 697 (794)
T ss_pred hhHHhHhhhccchHhhhhcCCChhhhhhhhhhcCcHHHHHHHHHhhcchHHHHHHHHHHhhcccchhHHHHHHhhcchhh
Confidence 4555555555555555 567788999999999999877788899999999999999999999999999988
Q ss_pred HHHHHHhcCChH
Q 035724 1195 CLAVCSKGKLFE 1206 (1939)
Q Consensus 1195 AI~my~k~k~fd 1206 (1939)
.+-++.-.++-+
T Consensus 698 LlLl~t~~g~~~ 709 (794)
T KOG0276|consen 698 LLLLYTSSGNAE 709 (794)
T ss_pred hhhhhhhcCChh
Confidence 887777766633
No 160
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=96.91 E-value=0.0018 Score=80.18 Aligned_cols=43 Identities=23% Similarity=0.330 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHh
Q 035724 210 NDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCF 255 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l 255 (1939)
++...+.+...+.. +..++..|++||||+|||+++..+++.+.
T Consensus 19 ~~~~~~~l~~~~~~---~~~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 19 QEHIVQTLKNAIKN---GRIAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred cHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 55556666666653 23456789999999999999998886654
No 161
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.91 E-value=0.0017 Score=85.00 Aligned_cols=96 Identities=20% Similarity=0.252 Sum_probs=55.0
Q ss_pred CCCCcEEEEeCCCCCchhHHHHHHHHHHhcC----------------------CcEEEEccc---chhhHHhh-------
Q 035724 227 DHKATVELIWGPPGTGKTKTVSMLLDFCFTK----------------------ASLIFCTAS---SSYKLHRV------- 274 (1939)
Q Consensus 227 ~~~~~v~LI~GPPGTGKTtti~~li~~~l~~----------------------a~vI~~T~s---ss~~l~~l------- 274 (1939)
+..++..|++||||||||+++..+++.+.-. .+++..-+. +......+
T Consensus 35 ~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~ 114 (563)
T PRK06647 35 NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFP 114 (563)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhc
Confidence 3456778999999999999999998655421 123322111 11111111
Q ss_pred -hccCCcEEEEeCCcccchH--HhhccccCC--CcceEEEEe-ccccCCcceec
Q 035724 275 -AMEQLKFLVIDEAAQLKEV--ESAIPLKLP--GIQHAILIG-DECQLPAMVES 322 (1939)
Q Consensus 275 -~~~~fdvVIIDEASQ~~E~--e~lipL~~~--~~~rlVLiG-D~~QLpPvV~s 322 (1939)
...+..++||||+.+++.. ..++..... +...+|++. +...|+|++.+
T Consensus 115 p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~S 168 (563)
T PRK06647 115 PASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKS 168 (563)
T ss_pred hhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHH
Confidence 1256789999999999874 344433332 233344443 44556665543
No 162
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.91 E-value=0.0028 Score=74.41 Aligned_cols=81 Identities=26% Similarity=0.344 Sum_probs=50.8
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcc-cchhhHHh--hhccCCcEEEEeCCcccchH--HhhccccCCCc
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTA-SSSYKLHR--VAMEQLKFLVIDEAAQLKEV--ESAIPLKLPGI 304 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~-sss~~l~~--l~~~~fdvVIIDEASQ~~E~--e~lipL~~~~~ 304 (1939)
-.-.|++||||.||||++.-++..+-.+.++.-+.. .....+.. ....+-|+++|||.+.+... +.+.|... ..
T Consensus 52 lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~gDlaaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaME-Df 130 (332)
T COG2255 52 LDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPGDLAAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAME-DF 130 (332)
T ss_pred cCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChhhHHHHHhcCCcCCeEEEehhhhcChhHHHHhhhhhh-he
Confidence 345699999999999999888766654444432211 01111111 13467899999999999876 66666643 22
Q ss_pred ceEEEEe
Q 035724 305 QHAILIG 311 (1939)
Q Consensus 305 ~rlVLiG 311 (1939)
+-=|+||
T Consensus 131 ~lDI~IG 137 (332)
T COG2255 131 RLDIIIG 137 (332)
T ss_pred eEEEEEc
Confidence 3335555
No 163
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.90 E-value=0.0014 Score=74.45 Aligned_cols=80 Identities=23% Similarity=0.316 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcCC--cEEEE-cccc------------h--hhHH
Q 035724 210 NDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTKA--SLIFC-TASS------------S--YKLH 272 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~a--~vI~~-T~ss------------s--~~l~ 272 (1939)
|+.-.+-+.-+... .+ -|-.+|.|||||||||.+..+++.++..+ .-++- .++. . .+..
T Consensus 32 Ne~tv~rl~via~~---gn-mP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~FAQ~kv 107 (333)
T KOG0991|consen 32 NEDTVERLSVIAKE---GN-MPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMFAQKKV 107 (333)
T ss_pred CHHHHHHHHHHHHc---CC-CCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHHHHHhhc
Confidence 55555555555442 22 23459999999999999999887766422 11110 0000 0 0111
Q ss_pred hhhccCCcEEEEeCCcccchH
Q 035724 273 RVAMEQLKFLVIDEAAQLKEV 293 (1939)
Q Consensus 273 ~l~~~~fdvVIIDEASQ~~E~ 293 (1939)
.+++..+.+||+|||-.++..
T Consensus 108 ~lp~grhKIiILDEADSMT~g 128 (333)
T KOG0991|consen 108 TLPPGRHKIIILDEADSMTAG 128 (333)
T ss_pred cCCCCceeEEEeeccchhhhH
Confidence 235678899999999877754
No 164
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.89 E-value=0.0041 Score=68.99 Aligned_cols=111 Identities=18% Similarity=0.252 Sum_probs=64.8
Q ss_pred HHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhc---------------------CCcEEEEcccch---
Q 035724 213 QAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFT---------------------KASLIFCTASSS--- 268 (1939)
Q Consensus 213 Q~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~---------------------~a~vI~~T~sss--- 268 (1939)
|.+++....+....+..++..|++||+|+||++++..+++.++. ..+++.......
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~ 81 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKS 81 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSS
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccch
Confidence 44444444443333455677899999999999999999855432 345555433321
Q ss_pred ---hhHHhh--------hccCCcEEEEeCCcccchHH--hhcccc-C-CCcceEEEEe-ccccCCcceecc
Q 035724 269 ---YKLHRV--------AMEQLKFLVIDEAAQLKEVE--SAIPLK-L-PGIQHAILIG-DECQLPAMVESS 323 (1939)
Q Consensus 269 ---~~l~~l--------~~~~fdvVIIDEASQ~~E~e--~lipL~-~-~~~~rlVLiG-D~~QLpPvV~s~ 323 (1939)
-+...+ ....+.++|||||..++... +++-.. . +....+||+. ++.+++|++.|.
T Consensus 82 i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SR 152 (162)
T PF13177_consen 82 IKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSR 152 (162)
T ss_dssp BSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTT
T ss_pred hhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhh
Confidence 111111 12468899999999998763 332222 2 3456777776 567789998765
No 165
>PRK06893 DNA replication initiation factor; Validated
Probab=96.88 E-value=0.0039 Score=72.92 Aligned_cols=62 Identities=18% Similarity=0.334 Sum_probs=42.1
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHh-cCCcEEEEcccchhhH--H-hhhccCCcEEEEeCCcccc
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCF-TKASLIFCTASSSYKL--H-RVAMEQLKFLVIDEAAQLK 291 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l-~~a~vI~~T~sss~~l--~-~l~~~~fdvVIIDEASQ~~ 291 (1939)
++..+|+||||||||+++.++...+. +..++++.+....... . .......|+++|||...+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~dlLilDDi~~~~ 104 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFSPAVLENLEQQDLVCLDDLQAVI 104 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhhHHHHhhcccCCEEEEeChhhhc
Confidence 46679999999999999999986544 4456666554321110 1 1123467999999998764
No 166
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.87 E-value=0.0021 Score=78.42 Aligned_cols=100 Identities=21% Similarity=0.243 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccch-h-h----HHhh---h--c
Q 035724 208 TLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASSS-Y-K----LHRV---A--M 276 (1939)
Q Consensus 208 ~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~sss-~-~----l~~l---~--~ 276 (1939)
-.++...+.+...+.. ...+++.+++||||||||+++..+.+..- ..++..+++.. . . +... . .
T Consensus 24 ~~~~~~~~~l~~~~~~---~~~~~~lll~G~~G~GKT~la~~l~~~~~--~~~~~i~~~~~~~~~i~~~l~~~~~~~~~~ 98 (316)
T PHA02544 24 ILPAADKETFKSIVKK---GRIPNMLLHSPSPGTGKTTVAKALCNEVG--AEVLFVNGSDCRIDFVRNRLTRFASTVSLT 98 (316)
T ss_pred cCcHHHHHHHHHHHhc---CCCCeEEEeeCcCCCCHHHHHHHHHHHhC--ccceEeccCcccHHHHHHHHHHHHHhhccc
Confidence 3566667777777663 23456778899999999999998876552 33333222221 0 0 1000 0 1
Q ss_pred cCCcEEEEeCCcccchHH---hhcc-cc-CCCcceEEEEec
Q 035724 277 EQLKFLVIDEAAQLKEVE---SAIP-LK-LPGIQHAILIGD 312 (1939)
Q Consensus 277 ~~fdvVIIDEASQ~~E~e---~lip-L~-~~~~~rlVLiGD 312 (1939)
...++|||||+..+...+ .+.. +. .++..++|++..
T Consensus 99 ~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n 139 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITAN 139 (316)
T ss_pred CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 357899999998773222 2221 11 124457777774
No 167
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=96.87 E-value=0.069 Score=73.26 Aligned_cols=177 Identities=14% Similarity=0.017 Sum_probs=101.6
Q ss_pred HHHcCCHHHHHHHHHHccC-----HHH----HHHHHHhcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHH
Q 035724 1173 FFLAGCYKLAADVYAKGKF-----FSE----CLAVCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIE 1243 (1939)
Q Consensus 1173 fE~~G~y~eAAelY~kagd-----~dk----AI~my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie 1243 (1939)
+...|++++|.+.|.++-. ++. ...+|...+++++|+.+.++..+..+.. ... .
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~----------~~~-------~ 309 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETI----------ADL-------S 309 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCC----------CCC-------C
Confidence 3466899999999988743 221 4457888999999999887543321100 000 0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhccHHH-HHHHH---Hhh------cCHHHHHHHHHhcCCHHHHHHHHHHc----
Q 035724 1244 QEFLEKCAIHYYGLQDKKSMMKFVKSFRSVDL-MRKFL---KSL------SCFDDLLVLEEESGNFMDAANIARLR---- 1309 (1939)
Q Consensus 1244 ~~~le~aa~hy~kagD~k~A~~~~~~~~s~ee-A~~~L---~k~------~~ldea~ell~e~G~feEAa~Lak~~---- 1309 (1939)
..........+.+.|++++|++.+.......- ....+ ... .-.-..+.++...|++++|...+++.
T Consensus 310 ~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~ 389 (765)
T PRK10049 310 DEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA 389 (765)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 00011113346788888888877653322110 00000 000 00112345667778888887766542
Q ss_pred -CC---HHHHHHHHHHhCCHHHHHHHHHHHh-----hhhccccCCCCCCCCcchhhHHHHHHHHHh
Q 035724 1310 -GD---IFLAVDLLQKAGCFKEACNVTLNHV-----ISNSLWSPGSKGWPLKQFTKKKELLEKAKS 1366 (1939)
Q Consensus 1310 -Gk---~~eAi~my~kAG~~~eA~rva~~~~-----~~~~l~~~~~~~~~~~~~~~ae~ll~~A~~ 1366 (1939)
+. ...-+.+|...|++++|...+.+=. -...+.+.+......++|.+|++++.++..
T Consensus 390 P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 390 PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22 2223556777888888877766543 244555666666777789999999988876
No 168
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.87 E-value=0.0027 Score=79.34 Aligned_cols=107 Identities=21% Similarity=0.276 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcC----------CcEEEEcccch---hhHHhh---
Q 035724 211 DSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTK----------ASLIFCTASSS---YKLHRV--- 274 (1939)
Q Consensus 211 ~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~----------a~vI~~T~sss---~~l~~l--- 274 (1939)
+...+.+...+.. +..++..+++||||+|||+++..+++.+... ..++-....+. .....+
T Consensus 23 ~~~~~~l~~~i~~---~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~ 99 (367)
T PRK14970 23 SHITNTLLNAIEN---NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIRNLIDQ 99 (367)
T ss_pred HHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHHHHHHH
Confidence 3444445555542 3445678999999999999999888665431 12222211111 111111
Q ss_pred -----hccCCcEEEEeCCcccchH--Hhhcccc-C-CCcceEEEEecc-ccCCcce
Q 035724 275 -----AMEQLKFLVIDEAAQLKEV--ESAIPLK-L-PGIQHAILIGDE-CQLPAMV 320 (1939)
Q Consensus 275 -----~~~~fdvVIIDEASQ~~E~--e~lipL~-~-~~~~rlVLiGD~-~QLpPvV 320 (1939)
...+..+|||||+..++.. ..++... . ++...+|++++. .++.|.+
T Consensus 100 ~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l 155 (367)
T PRK14970 100 VRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTI 155 (367)
T ss_pred HhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHH
Confidence 1134679999999888764 2232211 1 223456666643 3444443
No 169
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.12 Score=68.43 Aligned_cols=287 Identities=11% Similarity=0.111 Sum_probs=163.0
Q ss_pred cCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCc-chHHHHHHh-------------hh-HHhh-----------------
Q 035724 1062 ASSPEEWKSRGIKLFHEHNYDMATICFEKAKDS-YWEGRSKAT-------------GL-KATA----------------- 1109 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~-~~~~l~kA~-------------~l-~e~a----------------- 1109 (1939)
-.+|+-|.++|...++++...+|+.-|+||.|. .+..+..+. .. +.+.
T Consensus 1101 ~n~p~vWsqlakAQL~~~~v~dAieSyikadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~ 1180 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQLQGGLVKDAIESYIKADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTN 1180 (1666)
T ss_pred hCChHHHHHHHHHHHhcCchHHHHHHHHhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhc
Confidence 578999999999999999999999999999983 222221111 00 0000
Q ss_pred -----hhhhcC-Cch--------H-hHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHH
Q 035724 1110 -----DRCRSS-NPK--------Q-ANVNLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFF 1174 (1939)
Q Consensus 1110 -----~~~~s~-~~~--------e-a~~~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE 1174 (1939)
++...+ +.. - ..+.|..|--+|...-.+.+-+--...+|+|.-|++-.+++.+...|++..-..-
T Consensus 1181 rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCv 1260 (1666)
T KOG0985|consen 1181 RLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACV 1260 (1666)
T ss_pred hHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHh
Confidence 000000 000 0 1123444455566677888888888889999999999888655566888888888
Q ss_pred HcCCHHHHHHH----HHHccCHHHHHHHHHhcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHH--HHHHH
Q 035724 1175 LAGCYKLAADV----YAKGKFFSECLAVCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIE--QEFLE 1248 (1939)
Q Consensus 1175 ~~G~y~eAAel----Y~kagd~dkAI~my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie--~~~le 1248 (1939)
..+.|+.|--| -..+.+.+..|+.|...|-|++.+-+++.- +..+ .+|.++.+...-.|.-. ++..|
T Consensus 1261 d~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~---LGLE----RAHMgmfTELaiLYskykp~km~E 1333 (1666)
T KOG0985|consen 1261 DKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG---LGLE----RAHMGMFTELAILYSKYKPEKMME 1333 (1666)
T ss_pred chhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh---hchh----HHHHHHHHHHHHHHHhcCHHHHHH
Confidence 88888888655 345688999999999999999999888731 1111 34566666544433311 11233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhccHHHHHHHHHhhcCHHHHHHHHHhcCCHHHHHHHHHHcCCHHHHHHHHHHhCCHHHH
Q 035724 1249 KCAIHYYGLQDKKSMMKFVKSFRSVDLMRKFLKSLSCFDDLLVLEEESGNFMDAANIARLRGDIFLAVDLLQKAGCFKEA 1328 (1939)
Q Consensus 1249 ~aa~hy~kagD~k~A~~~~~~~~s~eeA~~~L~k~~~ldea~ell~e~G~feEAa~Lak~~Gk~~eAi~my~kAG~~~eA 1328 (1939)
.-...+-+.+ ....+++....+-|.+..=...+...+|.++-...+ ...||. .||.|.+-+---..-.-+-+|
T Consensus 1334 Hl~LFwsRvN-ipKviRA~eqahlW~ElvfLY~~y~eyDNAa~tmm~--h~teaw----~~~~FKdii~kVaNvElyYkA 1406 (1666)
T KOG0985|consen 1334 HLKLFWSRVN-IPKVIRAAEQAHLWSELVFLYDKYEEYDNAALTMME--HPTEAW----DHGQFKDIITKVANVELYYKA 1406 (1666)
T ss_pred HHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHh--CChhhh----hhhhHHHHHHHHhhHHHHHHH
Confidence 3333344443 333444555555555433223334444444322211 111111 124443322111111112234
Q ss_pred HHHHHHH---hhhhccccCCCCCCCCcchhhHHHHHHHHHh
Q 035724 1329 CNVTLNH---VISNSLWSPGSKGWPLKQFTKKKELLEKAKS 1366 (1939)
Q Consensus 1329 ~rva~~~---~~~~~l~~~~~~~~~~~~~~~ae~ll~~A~~ 1366 (1939)
.+..+.+ ++.+.|-. --|.-|+......|.||..
T Consensus 1407 i~FYl~~~P~llnDlL~v----L~pRlDh~r~v~~f~K~~~ 1443 (1666)
T KOG0985|consen 1407 IQFYLDFHPLLLNDLLTV----LSPRLDHTRTVSIFSKAGQ 1443 (1666)
T ss_pred HHHHHHhChHHHHHHHHh----cccccCchHHHHHHHhcCC
Confidence 4544444 24444432 2366678888888888866
No 170
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.86 E-value=0.0022 Score=86.95 Aligned_cols=96 Identities=19% Similarity=0.185 Sum_probs=55.1
Q ss_pred CCCCcEEEEeCCCCCchhHHHHHHHHHHh--c----------------------CCcEEEEcccc---hhhHHhh-----
Q 035724 227 DHKATVELIWGPPGTGKTKTVSMLLDFCF--T----------------------KASLIFCTASS---SYKLHRV----- 274 (1939)
Q Consensus 227 ~~~~~v~LI~GPPGTGKTtti~~li~~~l--~----------------------~a~vI~~T~ss---s~~l~~l----- 274 (1939)
+..++.+|++||||||||+++..+.+.++ + ..+++.....+ .-....+
T Consensus 34 ~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~ 113 (824)
T PRK07764 34 GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAF 113 (824)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHH
Confidence 34456789999999999999998886553 1 12233222111 1111111
Q ss_pred ---hccCCcEEEEeCCcccchH--HhhccccCC--CcceEEEEec-cccCCcceec
Q 035724 275 ---AMEQLKFLVIDEAAQLKEV--ESAIPLKLP--GIQHAILIGD-ECQLPAMVES 322 (1939)
Q Consensus 275 ---~~~~fdvVIIDEASQ~~E~--e~lipL~~~--~~~rlVLiGD-~~QLpPvV~s 322 (1939)
....+.++|||||.+++.. ..|+-.... ....+||+-. ...|.+++.|
T Consensus 114 ~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrS 169 (824)
T PRK07764 114 FAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRS 169 (824)
T ss_pred hchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHh
Confidence 2256889999999999986 334443332 3344555442 2345555543
No 171
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.82 E-value=0.0026 Score=66.61 Aligned_cols=59 Identities=31% Similarity=0.384 Sum_probs=38.0
Q ss_pred EEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccchh---------hHHh----hhccC-CcEEEEeCCcccchHH
Q 035724 234 LIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASSSY---------KLHR----VAMEQ-LKFLVIDEAAQLKEVE 294 (1939)
Q Consensus 234 LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~sss~---------~l~~----l~~~~-fdvVIIDEASQ~~E~e 294 (1939)
+|+||||||||+++..+++.+ +..++-..+.... .+.. ..... ..+++|||+-.+....
T Consensus 2 ll~G~~G~GKT~l~~~la~~l--~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYL--GFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS 74 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHT--TSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC
T ss_pred EEECcCCCCeeHHHHHHHhhc--ccccccccccccccccccccccccccccccccccccceeeeeccchhccccc
Confidence 899999999999999998775 3434333222111 1111 11233 6899999999886553
No 172
>PRK08116 hypothetical protein; Validated
Probab=96.77 E-value=0.004 Score=74.61 Aligned_cols=80 Identities=16% Similarity=0.314 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHhccc----CCCCCcEEEEeCCCCCchhHHHHHHHHHHhc-CCcEEEEcccchhh-HH-----------
Q 035724 210 NDSQAQAVLSCLRRTH----CDHKATVELIWGPPGTGKTKTVSMLLDFCFT-KASLIFCTASSSYK-LH----------- 272 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~~----~~~~~~v~LI~GPPGTGKTtti~~li~~~l~-~a~vI~~T~sss~~-l~----------- 272 (1939)
++.|..|+..+..-.. ....+...+|+||||||||+++.+++..+.. ...+++.+...... +.
T Consensus 90 ~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~ 169 (268)
T PRK08116 90 DKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDE 169 (268)
T ss_pred ChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccH
Confidence 5666666655442110 0112234699999999999999999977764 45565554322111 00
Q ss_pred --hh-hccCCcEEEEeCCcc
Q 035724 273 --RV-AMEQLKFLVIDEAAQ 289 (1939)
Q Consensus 273 --~l-~~~~fdvVIIDEASQ 289 (1939)
.+ .....|+|||||.+.
T Consensus 170 ~~~~~~l~~~dlLviDDlg~ 189 (268)
T PRK08116 170 NEIIRSLVNADLLILDDLGA 189 (268)
T ss_pred HHHHHHhcCCCEEEEecccC
Confidence 01 124679999999963
No 173
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.77 E-value=0.0078 Score=79.69 Aligned_cols=98 Identities=19% Similarity=0.180 Sum_probs=68.4
Q ss_pred CCCccccCceEEEEEcChhHHHHHhhhhCCceE-EEEeecccCCCCCEEEEeccCCCCCccccccCCCCCCCCCChhHhh
Q 035724 923 GGNMVGFGAEQVILVRDDCVRKEISNYVGKQAL-VLTIVESKGLEFQVIHYTSQCCNSPFKHALFDSTSPGSFPSFNEAK 1001 (1939)
Q Consensus 923 ~~~~~efga~q~IlVr~~~~k~~i~~~l~~~~l-VmTihesKGLEF~~Vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1001 (1939)
|-.+.++ +||..-+++.+-|++.+....+ |-|+-+=.|=+=+.||+ -|.+... . .+
T Consensus 970 Gv~~~dI----GIis~YraQv~Li~~~l~~~~lEinTVD~yQGRDKd~Iiv-Sfvrsn~--------------~----~~ 1026 (1100)
T KOG1805|consen 970 GVKPSDI----GIISPYRAQVELIRKILSSAVLEINTVDRYQGRDKDCIIV-SFVRSNK--------------K----SK 1026 (1100)
T ss_pred CCCHHHe----eeeehHHHHHHHHHhhccccceeeeehhhhcCCCCCEEEE-EEEecCC--------------c----cc
Confidence 4445444 7999999999999998865554 78999999988776666 4433300 0 12
Q ss_pred hhhHHHHhhhheeeeccccceEEEecccc--ccchhHHHHHhhc
Q 035724 1002 HNVLCSELKQLYVAITRTRQRLWIWENME--EFSKPMFDYWKKK 1043 (1939)
Q Consensus 1002 ~~~l~~Elk~LYVA~TRAr~~L~I~d~~~--~~~~Pm~~yw~~~ 1043 (1939)
...+-.+-+-|=||+||||++|+++.+.. ....|+.+++..+
T Consensus 1027 ~~eLLkD~rRlNVAlTRAK~KLIlvGs~s~l~~~~~~~~l~~~l 1070 (1100)
T KOG1805|consen 1027 VGELLKDWRRLNVALTRAKKKLILVGSKSTLESYPPFRQLLKLL 1070 (1100)
T ss_pred HHHHHHhhHHHHHHHHhhhceEEEEecccccccCchHHHHHhhh
Confidence 23455677778999999999999999775 3445666665543
No 174
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=0.074 Score=61.48 Aligned_cols=17 Identities=24% Similarity=0.194 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHcCCHHH
Q 035724 1123 NLREAAKIFEAIGKADS 1139 (1939)
Q Consensus 1123 ~y~eAA~lYe~~G~~~k 1139 (1939)
.|.+||.-|..+.+|++
T Consensus 33 ~yekAAvafRnAk~feK 49 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEK 49 (308)
T ss_pred HHHHHHHHHHhhccHHH
Confidence 34444444444444433
No 175
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.76 E-value=0.0026 Score=76.77 Aligned_cols=110 Identities=22% Similarity=0.194 Sum_probs=69.1
Q ss_pred CCCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHH-HHHhc---CCcEEEE------------------
Q 035724 206 SSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLL-DFCFT---KASLIFC------------------ 263 (1939)
Q Consensus 206 ~~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li-~~~l~---~a~vI~~------------------ 263 (1939)
-.+.|.+|+-|+...+... -++.-+.|+.|||||-++-+.. ...+. .-++|+.
T Consensus 226 i~prn~eQ~~ALdlLld~d-----I~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eE 300 (436)
T COG1875 226 IRPRNAEQRVALDLLLDDD-----IDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEE 300 (436)
T ss_pred cCcccHHHHHHHHHhcCCC-----CCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchh
Confidence 3578999999999998732 4677889999999998874443 11110 0111111
Q ss_pred -------------------ccc-chhhHHhh----------------hccCCcEEEEeCCcccchHHhhccccC-CCcce
Q 035724 264 -------------------TAS-SSYKLHRV----------------AMEQLKFLVIDEAAQLKEVESAIPLKL-PGIQH 306 (1939)
Q Consensus 264 -------------------T~s-ss~~l~~l----------------~~~~fdvVIIDEASQ~~E~e~lipL~~-~~~~r 306 (1939)
... +...+... +..+-..||||||..++..+..-.+.. ....+
T Consensus 301 eKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTiltR~G~GsK 380 (436)
T COG1875 301 EKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTILTRAGEGSK 380 (436)
T ss_pred hhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHHHhccCCCE
Confidence 000 00011100 223457899999999987766555533 35789
Q ss_pred EEEEeccccC-Ccce
Q 035724 307 AILIGDECQL-PAMV 320 (1939)
Q Consensus 307 lVLiGD~~QL-pPvV 320 (1939)
+|+.||+.|. .|.+
T Consensus 381 IVl~gd~aQiD~~yl 395 (436)
T COG1875 381 IVLTGDPAQIDTPYL 395 (436)
T ss_pred EEEcCCHHHcCCccc
Confidence 9999999998 4444
No 176
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.76 E-value=0.0038 Score=72.16 Aligned_cols=80 Identities=15% Similarity=0.223 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhc-CCcEEEEcccchhhH--Hhh-hccCCcEEEE
Q 035724 209 LNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFT-KASLIFCTASSSYKL--HRV-AMEQLKFLVI 284 (1939)
Q Consensus 209 LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~-~a~vI~~T~sss~~l--~~l-~~~~fdvVII 284 (1939)
-|.+-.+++...+.. ..+...+|+||||||||+++..+.+.+.. ...++..++...... ..+ .....++|||
T Consensus 21 ~~~~~~~~l~~~~~~----~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~lLvI 96 (226)
T TIGR03420 21 GNAELLAALRQLAAG----KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQADPEVLEGLEQADLVCL 96 (226)
T ss_pred CcHHHHHHHHHHHhc----CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhHHHHHhhcccCCEEEE
Confidence 455555555555432 22466799999999999999999877653 345555544332111 001 1234689999
Q ss_pred eCCcccch
Q 035724 285 DEAAQLKE 292 (1939)
Q Consensus 285 DEASQ~~E 292 (1939)
||+..+..
T Consensus 97 Ddi~~l~~ 104 (226)
T TIGR03420 97 DDVEAIAG 104 (226)
T ss_pred eChhhhcC
Confidence 99998875
No 177
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=96.75 E-value=0.062 Score=60.35 Aligned_cols=121 Identities=13% Similarity=0.206 Sum_probs=77.1
Q ss_pred CCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHH
Q 035724 1063 SSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAK 1142 (1939)
Q Consensus 1063 StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAae 1142 (1939)
..+..+..+|..++..+++++|+..|.++-.. +|. ....+...+..|...|++++|.+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~---------------------~p~-~~~~~~~la~~~~~~~~~~~A~~ 86 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEH---------------------DPD-DYLAYLALALYYQQLGELEKAED 86 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------------------Ccc-cHHHHHHHHHHHHHcCCHHHHHH
Confidence 44668899999999999999999999986220 111 11234566778888888888877
Q ss_pred HHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC----------HHHHHHHHHhcCChHHHHHHH
Q 035724 1143 CFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF----------FSECLAVCSKGKLFEIGLQYM 1212 (1939)
Q Consensus 1143 cy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd----------~dkAI~my~k~k~fd~airLv 1212 (1939)
.|.++-... . .....+...|.++...|++++|.+.|.++-. +.....++.+.+++++|....
T Consensus 87 ~~~~al~~~------~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (234)
T TIGR02521 87 SFRRALTLN------P--NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYL 158 (234)
T ss_pred HHHHHHhhC------C--CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 776553221 0 1112345567788888888888888877622 111222445556666666555
Q ss_pred H
Q 035724 1213 N 1213 (1939)
Q Consensus 1213 ~ 1213 (1939)
+
T Consensus 159 ~ 159 (234)
T TIGR02521 159 T 159 (234)
T ss_pred H
Confidence 5
No 178
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.73 E-value=0.0032 Score=76.63 Aligned_cols=94 Identities=24% Similarity=0.353 Sum_probs=61.6
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHh----------------------cCCcEEEEcccchhh-------HHhh------
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCF----------------------TKASLIFCTASSSYK-------LHRV------ 274 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l----------------------~~a~vI~~T~sss~~-------l~~l------ 274 (1939)
++..|++||||||||+++.++.+.++ .+.+++.-+.+.... ...+
T Consensus 24 ~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~ 103 (325)
T COG0470 24 PHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSE 103 (325)
T ss_pred CceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhcc
Confidence 45579999999999999999997666 334666655443222 1111
Q ss_pred h--ccCCcEEEEeCCcccchH--Hhhcccc--CCCcceEEEEec-cccCCcceecc
Q 035724 275 A--MEQLKFLVIDEAAQLKEV--ESAIPLK--LPGIQHAILIGD-ECQLPAMVESS 323 (1939)
Q Consensus 275 ~--~~~fdvVIIDEASQ~~E~--e~lipL~--~~~~~rlVLiGD-~~QLpPvV~s~ 323 (1939)
. ..++.+||||||-.+++. .++.... .+....+||+=+ +..+.|++.|.
T Consensus 104 ~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SR 159 (325)
T COG0470 104 SPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSR 159 (325)
T ss_pred CCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhc
Confidence 1 257899999999999985 3333322 234567777765 66666666553
No 179
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.72 E-value=0.0019 Score=77.83 Aligned_cols=51 Identities=22% Similarity=0.281 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhc-----CCcEEEEcccch
Q 035724 209 LNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFT-----KASLIFCTASSS 268 (1939)
Q Consensus 209 LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~-----~a~vI~~T~sss 268 (1939)
||++|+++|.. . .+..+|.|+||||||+|+...+..++. ..+|++.|.+..
T Consensus 1 l~~eQ~~~i~~-~--------~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~ 56 (315)
T PF00580_consen 1 LTDEQRRIIRS-T--------EGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNA 56 (315)
T ss_dssp S-HHHHHHHHS----------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHH
T ss_pred CCHHHHHHHhC-C--------CCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHH
Confidence 78999999998 3 467799999999999999877654433 346777665543
No 180
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.70 E-value=0.0028 Score=83.45 Aligned_cols=109 Identities=18% Similarity=0.230 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcCC---------------------------cEEEE
Q 035724 211 DSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTKA---------------------------SLIFC 263 (1939)
Q Consensus 211 ~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~a---------------------------~vI~~ 263 (1939)
+.-.+.+..++. .+..++-.|++||||||||+++..+++.+.-.. +++..
T Consensus 30 ~~~v~~L~~~~~---~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~ 106 (598)
T PRK09111 30 EAMVRTLTNAFE---TGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEM 106 (598)
T ss_pred HHHHHHHHHHHH---cCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEe
Confidence 334444444444 233456679999999999999999986654211 12111
Q ss_pred cccc---hhhHHhh--------hccCCcEEEEeCCcccchH--HhhccccC--CCcceEEEEe-ccccCCcceec
Q 035724 264 TASS---SYKLHRV--------AMEQLKFLVIDEAAQLKEV--ESAIPLKL--PGIQHAILIG-DECQLPAMVES 322 (1939)
Q Consensus 264 T~ss---s~~l~~l--------~~~~fdvVIIDEASQ~~E~--e~lipL~~--~~~~rlVLiG-D~~QLpPvV~s 322 (1939)
...+ .-....+ ....+.+|||||+.+++.. ..++.... ++...+||+. +...++|++.|
T Consensus 107 ~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~S 181 (598)
T PRK09111 107 DAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLS 181 (598)
T ss_pred cccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHh
Confidence 1111 1111111 1235689999999999864 33333322 2345666665 34567776644
No 181
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.67 E-value=0.0038 Score=76.93 Aligned_cols=111 Identities=19% Similarity=0.206 Sum_probs=69.3
Q ss_pred HHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhc----------------------CCcEEEEcccch--
Q 035724 213 QAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFT----------------------KASLIFCTASSS-- 268 (1939)
Q Consensus 213 Q~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~----------------------~a~vI~~T~sss-- 268 (1939)
|..++.........+..++..|++||||+|||+++..+++.++- +.++......+.
T Consensus 11 q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~~~i 90 (329)
T PRK08058 11 QPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDGQSI 90 (329)
T ss_pred HHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccccccC
Confidence 55555554444444556788899999999999999998866542 234444332211
Q ss_pred --hhHHh----h----hccCCcEEEEeCCcccchH--HhhccccC--CCcceEEEEe-ccccCCcceecc
Q 035724 269 --YKLHR----V----AMEQLKFLVIDEAAQLKEV--ESAIPLKL--PGIQHAILIG-DECQLPAMVESS 323 (1939)
Q Consensus 269 --~~l~~----l----~~~~fdvVIIDEASQ~~E~--e~lipL~~--~~~~rlVLiG-D~~QLpPvV~s~ 323 (1939)
-.... + ......++|||||..++.. .+++.... ++...+||+. ++.+|+|++.|.
T Consensus 91 ~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSR 160 (329)
T PRK08058 91 KKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSR 160 (329)
T ss_pred CHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhh
Confidence 11111 1 1245689999999999875 34444433 2445677776 567888888664
No 182
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=96.64 E-value=0.44 Score=66.79 Aligned_cols=32 Identities=6% Similarity=-0.055 Sum_probs=27.8
Q ss_pred cCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCC
Q 035724 1062 ASSPEEWKSRGIKLFHEHNYDMATICFEKAKD 1093 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd 1093 (1939)
..+++...+.+..++++|++++|...|+.+-+
T Consensus 373 ~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~ 404 (987)
T PRK09782 373 PANLTRLDQLTWQLMQNGQSREAADLLLQRYP 404 (987)
T ss_pred CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcC
Confidence 44777888889999999999999999999866
No 183
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.64 E-value=0.0012 Score=88.95 Aligned_cols=53 Identities=25% Similarity=0.342 Sum_probs=40.3
Q ss_pred ceEEEEeecccCCCCCEEEEeccCCCCCccccccCCCCCCCCCChhHhhhhhHHHHhhhheeeeccccceEEEecccc
Q 035724 953 QALVLTIVESKGLEFQVIHYTSQCCNSPFKHALFDSTSPGSFPSFNEAKHNVLCSELKQLYVAITRTRQRLWIWENME 1030 (1939)
Q Consensus 953 ~~lVmTihesKGLEF~~Vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Elk~LYVA~TRAr~~L~I~d~~~ 1030 (1939)
.+-.+|||+|.|.|||.|++.=.... ... -.+++||||+||||+.|+|+-+..
T Consensus 647 lAYAiTvHKsQGSe~~~Vii~l~~~~-----------------------~~~--l~r~llYTAiTRAk~~l~lvg~~~ 699 (720)
T TIGR01448 647 LAYATSIHKSQGSEFPTVILPIHTAH-----------------------MRM--LYRNLLYTALTRAKKRVILVGSAE 699 (720)
T ss_pred hhheeeehhccCccCCEEEEECCccc-----------------------chh--hhhchheeeeeeeceEEEEEECHH
Confidence 45579999999999999999521111 012 257889999999999999997553
No 184
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.64 E-value=0.0051 Score=79.40 Aligned_cols=43 Identities=23% Similarity=0.254 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 212 SQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 212 sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
.|..++....+....+..++..|++||||||||+++..+.+.+
T Consensus 20 Gq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L 62 (486)
T PRK14953 20 GQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVL 62 (486)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3555554444433334456778999999999988888777544
No 185
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.63 E-value=0.0042 Score=76.45 Aligned_cols=83 Identities=19% Similarity=0.269 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHHhcc-cCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcc-cchhhHHh--hhccCCcEEEEe
Q 035724 210 NDSQAQAVLSCLRRT-HCDHKATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTA-SSSYKLHR--VAMEQLKFLVID 285 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~-~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~-sss~~l~~--l~~~~fdvVIID 285 (1939)
.+...+++..++... ..+...+..+|+||||||||+++..+...+-.....+.++. .....+.. ......++++||
T Consensus 30 ~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~vl~ID 109 (328)
T PRK00080 30 QEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPGDLAAILTNLEEGDVLFID 109 (328)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChHHHHHHHHhcccCCEEEEe
Confidence 344555555555421 11223456799999999999999988876543222222211 11111111 122457899999
Q ss_pred CCcccch
Q 035724 286 EAAQLKE 292 (1939)
Q Consensus 286 EASQ~~E 292 (1939)
|+..++.
T Consensus 110 Ei~~l~~ 116 (328)
T PRK00080 110 EIHRLSP 116 (328)
T ss_pred cHhhcch
Confidence 9998864
No 186
>CHL00181 cbbX CbbX; Provisional
Probab=96.63 E-value=0.0039 Score=75.41 Aligned_cols=59 Identities=31% Similarity=0.316 Sum_probs=36.6
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHhc-----CCcEEEEcccchh---------hH-HhhhccCCcEEEEeCCccc
Q 035724 232 VELIWGPPGTGKTKTVSMLLDFCFT-----KASLIFCTASSSY---------KL-HRVAMEQLKFLVIDEAAQL 290 (1939)
Q Consensus 232 v~LI~GPPGTGKTtti~~li~~~l~-----~a~vI~~T~sss~---------~l-~~l~~~~fdvVIIDEASQ~ 290 (1939)
..+++||||||||+++..+.+.+.. ...++..+.+.-. .. ..+......+|+|||+..+
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l 134 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAMGGVLFIDEAYYL 134 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHHccCCEEEEEccchh
Confidence 3689999999999999999866532 2334443321110 00 0112223479999999876
No 187
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.61 E-value=0.0047 Score=79.00 Aligned_cols=60 Identities=20% Similarity=0.379 Sum_probs=41.0
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHHhc---CCcEEEEcccchhh-H-H--------hhh---ccCCcEEEEeCCccc
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFCFT---KASLIFCTASSSYK-L-H--------RVA---MEQLKFLVIDEAAQL 290 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~l~---~a~vI~~T~sss~~-l-~--------~l~---~~~fdvVIIDEASQ~ 290 (1939)
+..+|+||||||||+++.++...+.. +.+++..|+..... + . .+. ...+|+++|||...+
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l 206 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFL 206 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhh
Confidence 34799999999999999999877654 35677766432110 0 0 000 125899999999865
No 188
>PRK04296 thymidine kinase; Provisional
Probab=96.61 E-value=0.0046 Score=70.30 Aligned_cols=83 Identities=16% Similarity=0.155 Sum_probs=47.9
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHHh-cCCcEEEEcc--cch----------------------hhHHh-h--hccCCcEE
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFCF-TKASLIFCTA--SSS----------------------YKLHR-V--AMEQLKFL 282 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~l-~~a~vI~~T~--sss----------------------~~l~~-l--~~~~fdvV 282 (1939)
.+.+|.||||+||||.+..++..+. ...++++..+ ... ..+.. + ....+|+|
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvv 82 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCV 82 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEE
Confidence 5789999999999999988885543 3334433211 000 00000 0 12368999
Q ss_pred EEeCCcccchHHh--hccccCCCcceEEEEecc
Q 035724 283 VIDEAAQLKEVES--AIPLKLPGIQHAILIGDE 313 (1939)
Q Consensus 283 IIDEASQ~~E~e~--lipL~~~~~~rlVLiGD~ 313 (1939)
|||||..+++.+. ++-...+....+|+.|=.
T Consensus 83 iIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~ 115 (190)
T PRK04296 83 LIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLD 115 (190)
T ss_pred EEEccccCCHHHHHHHHHHHHHcCCeEEEEecC
Confidence 9999976655422 222222344677877743
No 189
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.57 E-value=0.0055 Score=77.09 Aligned_cols=94 Identities=15% Similarity=0.228 Sum_probs=55.1
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHhc---------------------CCcEEEEcccc----hhhHHhh--------hc
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCFT---------------------KASLIFCTASS----SYKLHRV--------AM 276 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l~---------------------~a~vI~~T~ss----s~~l~~l--------~~ 276 (1939)
++-.|++||||+|||+++..+++.++- +.++.+.++.+ ......+ ..
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~ 115 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPST 115 (394)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCccc
Confidence 456799999999999999988854432 22343332211 1111111 12
Q ss_pred cCCcEEEEeCCcccchHH--hhcccc-CCC-cceEEE-EeccccCCcceecc
Q 035724 277 EQLKFLVIDEAAQLKEVE--SAIPLK-LPG-IQHAIL-IGDECQLPAMVESS 323 (1939)
Q Consensus 277 ~~fdvVIIDEASQ~~E~e--~lipL~-~~~-~~rlVL-iGD~~QLpPvV~s~ 323 (1939)
.+..++|||||..+++.. .++... .++ ...+|| ..++..|+|++.|.
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSR 167 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSR 167 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhh
Confidence 456899999999998763 233322 222 233333 34667788887553
No 190
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.56 E-value=0.0099 Score=72.32 Aligned_cols=98 Identities=21% Similarity=0.272 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcC---CcEEEEcccch--hhH-----Hh------h
Q 035724 211 DSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTK---ASLIFCTASSS--YKL-----HR------V 274 (1939)
Q Consensus 211 ~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~---a~vI~~T~sss--~~l-----~~------l 274 (1939)
+.+.+.+...+.. ...+..+|+||||||||+++..+.+.+... ..++....+.. ... .. .
T Consensus 23 ~~~~~~l~~~i~~----~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~ 98 (319)
T PRK00440 23 EEIVERLKSYVKE----KNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVIRNKIKEFARTAPV 98 (319)
T ss_pred HHHHHHHHHHHhC----CCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHHHHHHHHHHhcCCC
Confidence 4455555555542 123346999999999999999998766432 22333322211 110 00 0
Q ss_pred hccCCcEEEEeCCcccchH--Hhhcccc--CCCcceEEEEec
Q 035724 275 AMEQLKFLVIDEAAQLKEV--ESAIPLK--LPGIQHAILIGD 312 (1939)
Q Consensus 275 ~~~~fdvVIIDEASQ~~E~--e~lipL~--~~~~~rlVLiGD 312 (1939)
......+|||||+..+... ..+..+. .++..++|++++
T Consensus 99 ~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~ 140 (319)
T PRK00440 99 GGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCN 140 (319)
T ss_pred CCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeC
Confidence 1123569999999888653 2222221 123456777664
No 191
>PHA00729 NTP-binding motif containing protein
Probab=96.55 E-value=0.0035 Score=72.73 Aligned_cols=58 Identities=17% Similarity=0.308 Sum_probs=35.8
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHh--------------cCCcEEEEcccchhh-HHhh--hccCCcEEEEeCCcc
Q 035724 232 VELIWGPPGTGKTKTVSMLLDFCF--------------TKASLIFCTASSSYK-LHRV--AMEQLKFLVIDEAAQ 289 (1939)
Q Consensus 232 v~LI~GPPGTGKTtti~~li~~~l--------------~~a~vI~~T~sss~~-l~~l--~~~~fdvVIIDEASQ 289 (1939)
-.+|.|||||||||++..++..+. ....+.+.+...... +... .....|++||||++-
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~ 93 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGI 93 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCch
Confidence 359999999999999999986643 122334433332222 1111 123458999999763
No 192
>KOG2108 consensus 3'-5' DNA helicase [Replication, recombination and repair]
Probab=96.55 E-value=0.0011 Score=86.95 Aligned_cols=70 Identities=30% Similarity=0.420 Sum_probs=46.9
Q ss_pred eEEEEeecccCCCCCEEEEeccCCCCCccccccCCCCCCCCCChhHhhh-hhHHHHhhhheeeeccccceEEEeccccc
Q 035724 954 ALVLTIVESKGLEFQVIHYTSQCCNSPFKHALFDSTSPGSFPSFNEAKH-NVLCSELKQLYVAITRTRQRLWIWENMEE 1031 (1939)
Q Consensus 954 ~lVmTihesKGLEF~~Vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~Elk~LYVA~TRAr~~L~I~d~~~~ 1031 (1939)
.++.|||.|||||||+|-+-|-+..-.. ... .++..+..+- .-...|.+.||||+|||+++||.++....
T Consensus 675 ~~l~Tih~akglefd~v~~~n~~~~~~~------s~~--~~~r~~~~r~~t~~~~e~n~lyV~vtRakkrl~~~k~~~~ 745 (853)
T KOG2108|consen 675 VILGTIHQAKGLEFDNVHLQNDFVKVFG------SVS--NFERLPSFRVETYNEDEWNFLYVAVTRAKKRLIMCKSLHE 745 (853)
T ss_pred hhhHHHHhccCcccceeecccCcccccc------ccc--chhhcchhhhhhhhhhhhhheeeeecchhhhccccccccc
Confidence 3467999999999999999765543100 000 0111122221 13457899999999999999999987754
No 193
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.54 E-value=0.0038 Score=76.82 Aligned_cols=110 Identities=16% Similarity=0.205 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhc----------------------CCcEEEEccc--
Q 035724 211 DSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFT----------------------KASLIFCTAS-- 266 (1939)
Q Consensus 211 ~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~----------------------~a~vI~~T~s-- 266 (1939)
|+|...-..++.. +..++-.|++||||+|||+++..+++.++- +.++..-...
T Consensus 6 PWl~~~~~~~~~~---~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~ 82 (328)
T PRK05707 6 PWQQSLWQQLAGR---GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA 82 (328)
T ss_pred CCcHHHHHHHHHC---CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC
Confidence 4556666666653 234567799999999999999998865542 2233332211
Q ss_pred ----chhhHHhh--------hccCCcEEEEeCCcccchH--HhhccccC-C-CcceEEEEe-ccccCCcceecc
Q 035724 267 ----SSYKLHRV--------AMEQLKFLVIDEAAQLKEV--ESAIPLKL-P-GIQHAILIG-DECQLPAMVESS 323 (1939)
Q Consensus 267 ----ss~~l~~l--------~~~~fdvVIIDEASQ~~E~--e~lipL~~-~-~~~rlVLiG-D~~QLpPvV~s~ 323 (1939)
+.-+...+ ......++|||||..+++. .+++.... | +...+||+- ++.+|+|++.|.
T Consensus 83 ~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SR 156 (328)
T PRK05707 83 DKTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSR 156 (328)
T ss_pred CCCCCHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhh
Confidence 11111111 1256789999999999886 34444332 2 345666666 556899998765
No 194
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.52 E-value=0.0062 Score=76.99 Aligned_cols=27 Identities=19% Similarity=0.167 Sum_probs=22.6
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHh
Q 035724 229 KATVELIWGPPGTGKTKTVSMLLDFCF 255 (1939)
Q Consensus 229 ~~~v~LI~GPPGTGKTtti~~li~~~l 255 (1939)
.++..|++||||+||||++..+++.+.
T Consensus 37 ~~ha~lf~Gp~G~GKtt~A~~~a~~l~ 63 (397)
T PRK14955 37 VGHGYIFSGLRGVGKTTAARVFAKAVN 63 (397)
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHhc
Confidence 355679999999999999998886664
No 195
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.49 E-value=0.0081 Score=75.57 Aligned_cols=46 Identities=33% Similarity=0.463 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhc
Q 035724 211 DSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFT 256 (1939)
Q Consensus 211 ~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~ 256 (1939)
+.|.+.+...+.....+..++..+|+||||||||+++..+++.+..
T Consensus 36 e~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~ 81 (394)
T PRK00411 36 EEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEE 81 (394)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5666777777653221223455699999999999999999866543
No 196
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.49 E-value=0.013 Score=68.10 Aligned_cols=103 Identities=17% Similarity=0.251 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhc---CCcEEEEcccchhhH------------Hh
Q 035724 209 LNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFT---KASLIFCTASSSYKL------------HR 273 (1939)
Q Consensus 209 LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~---~a~vI~~T~sss~~l------------~~ 273 (1939)
-|..=..++..+..... ...++..|+||+|+|||+++.++...+.+ +.+|+..++..-... ..
T Consensus 15 ~N~~a~~~~~~ia~~~~--~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~ 92 (219)
T PF00308_consen 15 SNELAYAAAKAIAENPG--ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFK 92 (219)
T ss_dssp TTHHHHHHHHHHHHSTT--TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHH
T ss_pred cHHHHHHHHHHHHhcCC--CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhh
Confidence 35554555555555322 12235689999999999999999866653 567777654321110 01
Q ss_pred hhccCCcEEEEeCCcccchHH----hhccc---cCCCcceEEEEecc
Q 035724 274 VAMEQLKFLVIDEAAQLKEVE----SAIPL---KLPGIQHAILIGDE 313 (1939)
Q Consensus 274 l~~~~fdvVIIDEASQ~~E~e----~lipL---~~~~~~rlVLiGD~ 313 (1939)
......|+++||....+.... .+.-+ .....+++|+.+|.
T Consensus 93 ~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~ 139 (219)
T PF00308_consen 93 DRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDR 139 (219)
T ss_dssp HHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred hhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCC
Confidence 123578999999998876542 22222 11245789998863
No 197
>PTZ00424 helicase 45; Provisional
Probab=96.47 E-value=0.0053 Score=77.30 Aligned_cols=35 Identities=23% Similarity=0.204 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVS 248 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~ 248 (1939)
..+++.|.+|+..++... . .++.+|+|||||.+..
T Consensus 49 ~~~~~~Q~~ai~~i~~~~------d-~ii~apTGsGKT~~~~ 83 (401)
T PTZ00424 49 EKPSAIQQRGIKPILDGY------D-TIGQAQSGTGKTATFV 83 (401)
T ss_pred CCCCHHHHHHHHHHhCCC------C-EEEECCCCChHHHHHH
Confidence 358999999999999742 3 4799999999998653
No 198
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.027 Score=69.66 Aligned_cols=140 Identities=16% Similarity=0.108 Sum_probs=94.6
Q ss_pred cCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhh----------------HHhhhhhhcCCchHhHHHHH
Q 035724 1062 ASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGL----------------KATADRCRSSNPKQANVNLR 1125 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l----------------~e~a~~~~s~~~~ea~~~y~ 1125 (1939)
.+.-..|--.|..++..++-..|+.+|++|-+........=+++ ...+...+.. ....|.
T Consensus 361 p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn----DsRlw~ 436 (559)
T KOG1155|consen 361 PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN----DSRLWV 436 (559)
T ss_pred cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC----chHHHH
Confidence 35567999999999999999999999999977444332211221 1222223222 233577
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC-----------HHH
Q 035724 1126 EAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF-----------FSE 1194 (1939)
Q Consensus 1126 eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd-----------~dk 1194 (1939)
-.++.|++.++.++|++||.++=...++ ..+.+.+.|+.+|+.+++.+|+++|++.=+ ..+
T Consensus 437 aLG~CY~kl~~~~eAiKCykrai~~~dt--------e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~k 508 (559)
T KOG1155|consen 437 ALGECYEKLNRLEEAIKCYKRAILLGDT--------EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIK 508 (559)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcccc--------chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence 8889999999999999998765433332 124577889999999999999999988632 222
Q ss_pred HHH----HHHhcCChHHHHHHHH
Q 035724 1195 CLA----VCSKGKLFEIGLQYMN 1213 (1939)
Q Consensus 1195 AI~----my~k~k~fd~airLv~ 1213 (1939)
|.- -+.+.++|++|-.++.
T Consensus 509 a~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 509 ARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred HHHHHHHHHHhhcchHHHHHHHH
Confidence 222 2345666666666555
No 199
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.42 E-value=0.009 Score=84.95 Aligned_cols=125 Identities=16% Similarity=0.185 Sum_probs=82.2
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCC-CchhHHHHHHHHHHhcCC-cEEEEcccchh--hH-----------
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPG-TGKTKTVSMLLDFCFTKA-SLIFCTASSSY--KL----------- 271 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPG-TGKTtti~~li~~~l~~a-~vI~~T~sss~--~l----------- 271 (1939)
..++..|..|+..++.. .+++.+|.|+-| ||||+++..++...-... .|.+.+.++.. .+
T Consensus 280 ~~~~~~q~~Av~~il~d-----r~~v~iv~~~GgAtGKtt~l~~l~~~a~~~G~~V~~lApt~~a~~~L~e~~gi~a~Tv 354 (1623)
T PRK14712 280 VPRTAGYSDAVSVLAQD-----RPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMNLKQDERLSGELI 354 (1623)
T ss_pred cccchhHHHHHHHHhcC-----CCceEEEEecccccccHHHHHHHHHHHHhCCcEEEEEeCCHHHHHHHHhccCCCchhh
Confidence 45788999999999964 367888888888 999999998875554333 33332221111 00
Q ss_pred H-------hhhccCCcEEEEeCCcccchHHhhccc--cCCCcceEEEEeccccCCcceeccccccccccCCHHHHHHhcC
Q 035724 272 H-------RVAMEQLKFLVIDEAAQLKEVESAIPL--KLPGIQHAILIGDECQLPAMVESSVSGEACLGRSLFERLSNLG 342 (1939)
Q Consensus 272 ~-------~l~~~~fdvVIIDEASQ~~E~e~lipL--~~~~~~rlVLiGD~~QLpPvV~s~~~~~~gl~~SLFeRL~~~~ 342 (1939)
. .....+-+++|||||++++-.+..-.+ +.....| |++||.+|+.. ....|+-|.+.|
T Consensus 355 a~~~~~l~~~~~~~~~ilIVDEA~~Ls~rdm~~Ll~~A~~~gar-VllgD~~Q~~a------------AG~af~~Lq~aG 421 (1623)
T PRK14712 355 TGRRQLLEGMAFTPGSTVIVDQGEKLSLKETLTLLDGAARHNVQ-VLITDSGQRTG------------TGSALMAMKDAG 421 (1623)
T ss_pred hhhhhhhcccCCCCCcEEEEECCCcCCHHHHHHHHHHHHhcCCE-EEEEechhhhh------------cccHHHHHHHcC
Confidence 0 001233489999999999887655443 3334467 66889999843 245688888877
Q ss_pred Ccccccc
Q 035724 343 QAKHLLS 349 (1939)
Q Consensus 343 ~~~~~L~ 349 (1939)
...+.+.
T Consensus 422 ~~t~~~~ 428 (1623)
T PRK14712 422 VNTYRWQ 428 (1623)
T ss_pred CcEEEEc
Confidence 6665443
No 200
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.41 E-value=0.011 Score=70.38 Aligned_cols=45 Identities=22% Similarity=0.166 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHh
Q 035724 209 LNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCF 255 (1939)
Q Consensus 209 LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l 255 (1939)
.++.+++|+....... ....++.+|+||||+||||++..+...+.
T Consensus 24 ~~~~~~~~~~~l~~~~--~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGL--SQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCHHHHHHHHHHHHHH--hcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3556666666554322 12256889999999999999998876554
No 201
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=96.41 E-value=0.0066 Score=77.78 Aligned_cols=86 Identities=16% Similarity=0.175 Sum_probs=62.3
Q ss_pred CCCCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHh-----------------------------
Q 035724 205 LSSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCF----------------------------- 255 (1939)
Q Consensus 205 ~~~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l----------------------------- 255 (1939)
....|.+.|++|+......... ..-.+|.-|+|+|||.+...++..+.
T Consensus 33 ~~~~lr~yQ~~al~a~~~~~~~---~~~gvivlpTGaGKT~va~~~~~~~~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~~~ 109 (442)
T COG1061 33 FEFELRPYQEEALDALVKNRRT---ERRGVIVLPTGAGKTVVAAEAIAELKRSTLVLVPTKELLDQWAEALKKFLLLNDE 109 (442)
T ss_pred cCCCCcHHHHHHHHHHHhhccc---CCceEEEeCCCCCHHHHHHHHHHHhcCCEEEEECcHHHHHHHHHHHHHhcCCccc
Confidence 3567999999999999984221 34568999999999999998881110
Q ss_pred ---------cC--CcEEEEcccchhhH---HhhhccCCcEEEEeCCcccchH
Q 035724 256 ---------TK--ASLIFCTASSSYKL---HRVAMEQLKFLVIDEAAQLKEV 293 (1939)
Q Consensus 256 ---------~~--a~vI~~T~sss~~l---~~l~~~~fdvVIIDEASQ~~E~ 293 (1939)
.. ..|+++|..+..+. .......|++||+||++.++-+
T Consensus 110 ~g~~~~~~~~~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~ 161 (442)
T COG1061 110 IGIYGGGEKELEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAP 161 (442)
T ss_pred cceecCceeccCCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcH
Confidence 00 24777777666553 3334457999999999999864
No 202
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.41 E-value=0.0054 Score=76.28 Aligned_cols=47 Identities=23% Similarity=0.316 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHh
Q 035724 209 LNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCF 255 (1939)
Q Consensus 209 LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l 255 (1939)
--+.|.+.+...+........++..+|+||||||||+++..+++.+.
T Consensus 19 gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~ 65 (365)
T TIGR02928 19 HRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELE 65 (365)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 36678888888876432223345679999999999999998886553
No 203
>PRK08727 hypothetical protein; Validated
Probab=96.40 E-value=0.0055 Score=71.90 Aligned_cols=83 Identities=16% Similarity=0.146 Sum_probs=50.7
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHh-cCCcEEEEcccchhh-HHh--hhccCCcEEEEeCCcccchH----Hhhcccc-
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCF-TKASLIFCTASSSYK-LHR--VAMEQLKFLVIDEAAQLKEV----ESAIPLK- 300 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l-~~a~vI~~T~sss~~-l~~--l~~~~fdvVIIDEASQ~~E~----e~lipL~- 300 (1939)
....+|+||||||||+++.++...+. ...++++.+...... ... ......|+|||||+..+... +.+.-+.
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n 120 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRSLVALDGLESIAGQREDEVALFDFHN 120 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHHHHHHhcCCEEEEeCcccccCChHHHHHHHHHHH
Confidence 34579999999999999999885544 455666655432211 111 12346799999999877521 1222221
Q ss_pred --CCCcceEEEEec
Q 035724 301 --LPGIQHAILIGD 312 (1939)
Q Consensus 301 --~~~~~rlVLiGD 312 (1939)
.....++|++++
T Consensus 121 ~~~~~~~~vI~ts~ 134 (233)
T PRK08727 121 RARAAGITLLYTAR 134 (233)
T ss_pred HHHHcCCeEEEECC
Confidence 112346888887
No 204
>PF13087 AAA_12: AAA domain; PDB: 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A 2XZL_A.
Probab=96.36 E-value=0.0016 Score=73.81 Aligned_cols=77 Identities=19% Similarity=0.148 Sum_probs=52.6
Q ss_pred eEEEEEcChhHHHHHhhhhCC----c----eEEEEeecccCCCCCEEEEeccCCCCCccccccCCCCCCCCCChhHhhhh
Q 035724 932 EQVILVRDDCVRKEISNYVGK----Q----ALVLTIVESKGLEFQVIHYTSQCCNSPFKHALFDSTSPGSFPSFNEAKHN 1003 (1939)
Q Consensus 932 ~q~IlVr~~~~k~~i~~~l~~----~----~lVmTihesKGLEF~~Vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1003 (1939)
+.+||++-..+++.|.+.+.+ . ..|.|+|.+.|.|+|.||+--.-.. .. . ..
T Consensus 114 ~I~Iitpy~~Q~~~i~~~l~~~~~~~~~~~~~v~Tvd~~QG~E~diVi~s~v~~~-----------~~---~------~~ 173 (200)
T PF13087_consen 114 SIGIITPYRAQVALIRKALRSRYPSSPIKDIKVSTVDSFQGQEADIVIVSLVRTN-----------SS---S------NI 173 (200)
T ss_dssp GEEEEES-HHHHHHHHHHHHHCSTCHHHHCSEEEEHHHHTT--EEEEEEEE---S-----------TT---S-------S
T ss_pred CceEEcCchHHHHHHHHHHhhhccccccceEEEecHHHhccccceEEEEEeccCC-----------cc---c------cc
Confidence 569999999999998888742 2 5799999999999999999532221 00 0 01
Q ss_pred hHHHHhhhheeeeccccceEEEecc
Q 035724 1004 VLCSELKQLYVAITRTRQRLWIWEN 1028 (1939)
Q Consensus 1004 ~l~~Elk~LYVA~TRAr~~L~I~d~ 1028 (1939)
....+.+.+-||+||||..|||+-+
T Consensus 174 ~f~~~~~r~nVA~SRAk~~liiig~ 198 (200)
T PF13087_consen 174 GFLNDPNRLNVALSRAKSGLIIIGN 198 (200)
T ss_dssp GGGC-HHHHHHHHTSEEEEEEEEE-
T ss_pred cccCCcCeeeeeHHHHhcCEEEEec
Confidence 1123567889999999999999865
No 205
>PRK06921 hypothetical protein; Provisional
Probab=96.34 E-value=0.006 Score=73.00 Aligned_cols=58 Identities=17% Similarity=0.304 Sum_probs=41.4
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHhc--CCcEEEEcccchhhHH-----h-----hhccCCcEEEEeCC
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCFT--KASLIFCTASSSYKLH-----R-----VAMEQLKFLVIDEA 287 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l~--~a~vI~~T~sss~~l~-----~-----l~~~~fdvVIIDEA 287 (1939)
....+++||||||||+++.+++..+.. ...|+..+........ . ......|+|||||.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl 186 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDL 186 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 345699999999999999999987775 4677777653321110 0 12346899999999
No 206
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.34 E-value=0.0097 Score=78.95 Aligned_cols=45 Identities=27% Similarity=0.366 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHHhcc-cCCCCCcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 210 NDSQAQAVLSCLRRT-HCDHKATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~-~~~~~~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
=+.|.+.|..+|... ....++.+..|.||||||||.|+..+++.+
T Consensus 760 REeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrEL 805 (1164)
T PTZ00112 760 REKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLL 805 (1164)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 457777777777743 222334556799999999999999888554
No 207
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.34 E-value=0.34 Score=60.77 Aligned_cols=73 Identities=25% Similarity=0.339 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHhCCcc------hHHHHHHhhhH---Hh-h---hhhhcCCchHhHHHHHHHHHHHHH
Q 035724 1067 EWKSRGIKLFHEHNYDMATICFEKAKDSY------WEGRSKATGLK---AT-A---DRCRSSNPKQANVNLREAAKIFEA 1133 (1939)
Q Consensus 1067 eW~~lG~~l~~q~~yd~A~kcF~rAgd~~------~~~l~kA~~l~---e~-a---~~~~s~~~~ea~~~y~eAA~lYe~ 1133 (1939)
..+..|.++|.+++|++|++||..|=+.. +..++.+|.-. +. . ......+|. +.+.+..-|..+|.
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHEQ 195 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHHh
Confidence 56788999999999999999999985411 11233333211 11 1 111223444 44455566677888
Q ss_pred cCCHHHH
Q 035724 1134 IGKADSA 1140 (1939)
Q Consensus 1134 ~G~~~kA 1140 (1939)
.|++++|
T Consensus 196 lg~~~ea 202 (606)
T KOG0547|consen 196 LGKFDEA 202 (606)
T ss_pred hccHHHH
Confidence 8988877
No 208
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.33 E-value=0.017 Score=73.16 Aligned_cols=91 Identities=19% Similarity=0.161 Sum_probs=51.4
Q ss_pred ecccccHHHHHHHHHhccChhHHHHhhcCCCCcccccccCCCcCCCccc-cccCCCCCCCCCHHHHHHHHHHHhcccCCC
Q 035724 150 LTNVTSNTRIWNSLHMSGNLKIIKELLCTDSVVKEDCELCPVQSDGIWN-DIFGPSLSSTLNDSQAQAVLSCLRRTHCDH 228 (1939)
Q Consensus 150 l~N~~t~~R~~~AL~~~~~~~ii~~lL~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~LN~sQ~~AV~~~L~~~~~~~ 228 (1939)
++|-+.+.|+.++|....+. ++.++....-. + .|......+. ..+ ....-..+...+.+...+..
T Consensus 128 ~~~~~~~~~~~~~l~~~i~~--~~~~~~s~~~~---~--~p~~~~~~y~~~~~--l~d~~i~e~~le~l~~~L~~----- 193 (459)
T PRK11331 128 VSQGLDYTRFASMLDNIIND--YKLIFNSGKSV---I--PPMSKTESYCLEDA--LNDLFIPETTIETILKRLTI----- 193 (459)
T ss_pred cccCCCHHHHHHHHhhHHHH--HHHhhcccccc---C--CchhcccchhHHHH--hhcccCCHHHHHHHHHHHhc-----
Confidence 57888999999999775332 33333322110 0 1111111000 000 01123456666777777763
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHh
Q 035724 229 KATVELIWGPPGTGKTKTVSMLLDFCF 255 (1939)
Q Consensus 229 ~~~v~LI~GPPGTGKTtti~~li~~~l 255 (1939)
....++.||||||||+++..+...+.
T Consensus 194 -~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 194 -KKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred -CCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 34568899999999999988876553
No 209
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.33 E-value=0.012 Score=72.04 Aligned_cols=115 Identities=17% Similarity=0.212 Sum_probs=72.6
Q ss_pred CCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhc-------------------CCcEEEE--ccc-
Q 035724 209 LNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFT-------------------KASLIFC--TAS- 266 (1939)
Q Consensus 209 LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~-------------------~a~vI~~--T~s- 266 (1939)
+=++|..+..........+..++-.|++||+|+||++++..+++.++- +.++... ...
T Consensus 5 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~ 84 (319)
T PRK08769 5 FSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNR 84 (319)
T ss_pred ccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCc
Confidence 445677777766665444455677899999999999999888854431 2233332 111
Q ss_pred ---------chhhHHhh--------hccCCcEEEEeCCcccchH--HhhccccC--CCcceEEEEec-cccCCcceecc
Q 035724 267 ---------SSYKLHRV--------AMEQLKFLVIDEAAQLKEV--ESAIPLKL--PGIQHAILIGD-ECQLPAMVESS 323 (1939)
Q Consensus 267 ---------ss~~l~~l--------~~~~fdvVIIDEASQ~~E~--e~lipL~~--~~~~rlVLiGD-~~QLpPvV~s~ 323 (1939)
+.-+...+ ......++|||+|-.+++. .+++-... ++...+||+.+ +.+|+|++.|.
T Consensus 85 ~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSR 163 (319)
T PRK08769 85 TGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSR 163 (319)
T ss_pred ccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhh
Confidence 01111111 1245789999999999986 33433322 34567888887 67889998764
No 210
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.31 E-value=0.0098 Score=78.63 Aligned_cols=43 Identities=16% Similarity=0.135 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHh
Q 035724 213 QAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCF 255 (1939)
Q Consensus 213 Q~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l 255 (1939)
|..++....+....+..++-.|++|||||||||++..+++.+.
T Consensus 21 Qe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~ 63 (620)
T PRK14954 21 QEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (620)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4444444333332234456689999999999999998886654
No 211
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.31 E-value=0.0098 Score=73.87 Aligned_cols=44 Identities=18% Similarity=0.161 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhc
Q 035724 213 QAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFT 256 (1939)
Q Consensus 213 Q~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~ 256 (1939)
|.+|+............++..||+||+|+|||+++..+++.++.
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 45555554444333445667899999999999999999877654
No 212
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.30 E-value=0.0098 Score=72.59 Aligned_cols=60 Identities=15% Similarity=0.163 Sum_probs=41.0
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHhc-CCcEEEEcccchh-hHH-----------hhhccCCcEEEEeCCcccc
Q 035724 232 VELIWGPPGTGKTKTVSMLLDFCFT-KASLIFCTASSSY-KLH-----------RVAMEQLKFLVIDEAAQLK 291 (1939)
Q Consensus 232 v~LI~GPPGTGKTtti~~li~~~l~-~a~vI~~T~sss~-~l~-----------~l~~~~fdvVIIDEASQ~~ 291 (1939)
-.+|+||||||||+++.+++..+.. +..+.+.+...-. .+. .......|+|||||.+.-+
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e~ 230 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVKEAPVLMLDDIGAEQ 230 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcCCCEEEEecCCCcc
Confidence 4599999999999999999966654 4566665543211 110 0123578999999998543
No 213
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.29 E-value=0.0056 Score=75.30 Aligned_cols=61 Identities=25% Similarity=0.301 Sum_probs=42.2
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHHhc-CCcEEEEcccchhhHH-h-------------hhccCCcEEEEeCCcccc
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFCFT-KASLIFCTASSSYKLH-R-------------VAMEQLKFLVIDEAAQLK 291 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~l~-~a~vI~~T~sss~~l~-~-------------l~~~~fdvVIIDEASQ~~ 291 (1939)
.-.+++||||||||+++.+++..++. ...|++.|........ . .....+|+||||+.+...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e~ 259 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTEK 259 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCCC
Confidence 44699999999999999999977665 4566666553322111 0 112468999999997653
No 214
>KOG0987 consensus DNA helicase PIF1/RRM3 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.28 E-value=0.008 Score=78.71 Aligned_cols=114 Identities=25% Similarity=0.267 Sum_probs=70.4
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccch-hhH--------Hhh---
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASSS-YKL--------HRV--- 274 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~sss-~~l--------~~l--- 274 (1939)
..||++|+.....++.... +...++.. .|++|||||++..+++..+-.....+++.+++. +.+ +..
T Consensus 116 ~~l~~eqk~v~d~~~~~v~-~~~g~~ff-~g~~gtgKt~l~~t~~~~~~~~g~~~~~v~~s~ia~~~l~gg~T~~s~fgi 193 (540)
T KOG0987|consen 116 KKLTPEQKRVYDAILEAVE-NNLGGVFF-YGFGGTGKTYLLKTLIAALRSRGKIVLNVASSGIAALLLEGGRTAHSRFGI 193 (540)
T ss_pred hhcCHHHHHHHHHHHHHHh-ccccceee-eccCCccceeeHHHHHHHHhcCCceEEEeeecchhhhhccCCccceeeecc
Confidence 5799999987774444332 22345555 999999999999888866554443333322111 100 000
Q ss_pred -------------------hccCCcEEEEeCCcccchHHhhc--c-c-------cCCCcceEEEEeccccCCcceec
Q 035724 275 -------------------AMEQLKFLVIDEAAQLKEVESAI--P-L-------KLPGIQHAILIGDECQLPAMVES 322 (1939)
Q Consensus 275 -------------------~~~~fdvVIIDEASQ~~E~e~li--p-L-------~~~~~~rlVLiGD~~QLpPvV~s 322 (1939)
....-+++|+|||+|+.....-. - + ...+++.+++.||..|+||++..
T Consensus 194 ~l~~~~~~~~~~k~~~~~~~l~~~~~~i~dE~~m~~~~~fe~ld~~~r~i~~~~~pfggk~~~~~GDF~qllpv~~~ 270 (540)
T KOG0987|consen 194 PLNPNETSTCPIKPKSDLAELIEEKLIIWDEAPMVDRYCFEKLDRTLRDIRKNDKPFGGKVLVLGGDFRQLLPVIEG 270 (540)
T ss_pred ccCCCceeeeecccCccHHHhccccceeeecccccchhhhhhhhHHHHHHhhcCCCCCCeeeeccCcccccCcccCC
Confidence 01122789999999998541110 0 0 12367889999999999999854
No 215
>PHA02558 uvsW UvsW helicase; Provisional
Probab=96.26 E-value=0.0062 Score=79.26 Aligned_cols=80 Identities=21% Similarity=0.249 Sum_probs=54.4
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHh-------------------------------
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCF------------------------------- 255 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l------------------------------- 255 (1939)
..+.+.|.+||..++.. .-.+++.|+|+|||.++..+++.++
T Consensus 113 ~~~r~~Q~~av~~~l~~-------~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~ 185 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKN-------NRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFP 185 (501)
T ss_pred CCCCHHHHHHHHHHHhc-------CceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhcccc
Confidence 46889999999999872 2358999999999998876641110
Q ss_pred --------------cCCcEEEEcccchhhHHhhhccCCcEEEEeCCcccchH
Q 035724 256 --------------TKASLIFCTASSSYKLHRVAMEQLKFLVIDEAAQLKEV 293 (1939)
Q Consensus 256 --------------~~a~vI~~T~sss~~l~~l~~~~fdvVIIDEASQ~~E~ 293 (1939)
....|+++|..+...........+++||||||..+...
T Consensus 186 ~~~~~~i~~g~~~~~~~~I~VaT~qsl~~~~~~~~~~~~~iIvDEaH~~~~~ 237 (501)
T PHA02558 186 REAMHKIYSGTAKDTDAPIVVSTWQSAVKQPKEWFDQFGMVIVDECHLFTGK 237 (501)
T ss_pred ccceeEEecCcccCCCCCEEEeeHHHHhhchhhhccccCEEEEEchhcccch
Confidence 11345555554433222222357899999999998754
No 216
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.25 E-value=0.01 Score=76.14 Aligned_cols=29 Identities=28% Similarity=0.243 Sum_probs=23.8
Q ss_pred CCCcEEEEeCCCCCchhHHHHHHHHHHhc
Q 035724 228 HKATVELIWGPPGTGKTKTVSMLLDFCFT 256 (1939)
Q Consensus 228 ~~~~v~LI~GPPGTGKTtti~~li~~~l~ 256 (1939)
..++..|++||||||||+++..+++.+..
T Consensus 37 ~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 37 RAAHAYLFSGIRGTGKTTLARIFAKALNC 65 (451)
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 34567899999999999999999876643
No 217
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.25 E-value=0.0072 Score=77.29 Aligned_cols=83 Identities=12% Similarity=0.154 Sum_probs=52.2
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHHh-cCCcEEEEcccchhh------------HHhhhccCCcEEEEeCCcccchH----
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFCF-TKASLIFCTASSSYK------------LHRVAMEQLKFLVIDEAAQLKEV---- 293 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~l-~~a~vI~~T~sss~~------------l~~l~~~~fdvVIIDEASQ~~E~---- 293 (1939)
+..+|+||||+|||+++.++...+. ...+++..+...... .........|+++|||+..+...
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k~~~q 221 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGATQ 221 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcCChhhH
Confidence 4569999999999999999986654 456777765432110 00111346899999999877431
Q ss_pred -Hhhccc--cCCCcceEEEEecc
Q 035724 294 -ESAIPL--KLPGIQHAILIGDE 313 (1939)
Q Consensus 294 -e~lipL--~~~~~~rlVLiGD~ 313 (1939)
+....+ .....+++|+.||.
T Consensus 222 eelf~l~N~l~~~~k~IIlts~~ 244 (445)
T PRK12422 222 EEFFHTFNSLHTEGKLIVISSTC 244 (445)
T ss_pred HHHHHHHHHHHHCCCcEEEecCC
Confidence 112221 11234688888873
No 218
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.22 E-value=0.014 Score=71.39 Aligned_cols=111 Identities=19% Similarity=0.269 Sum_probs=67.9
Q ss_pred HHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhc----------------CCcEEEEccc----c-----
Q 035724 213 QAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFT----------------KASLIFCTAS----S----- 267 (1939)
Q Consensus 213 Q~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~----------------~a~vI~~T~s----s----- 267 (1939)
|.+++....+....+..++..|++||+|+||++++..+++.++- +.++....+. +
T Consensus 9 q~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~ 88 (314)
T PRK07399 9 QPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITA 88 (314)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccch
Confidence 34444444333333445688999999999999999988866542 2333332210 0
Q ss_pred --------------h---hhHHhh--------hccCCcEEEEeCCcccchH--Hhhcccc-CCCcceEEEEe-ccccCCc
Q 035724 268 --------------S---YKLHRV--------AMEQLKFLVIDEAAQLKEV--ESAIPLK-LPGIQHAILIG-DECQLPA 318 (1939)
Q Consensus 268 --------------s---~~l~~l--------~~~~fdvVIIDEASQ~~E~--e~lipL~-~~~~~rlVLiG-D~~QLpP 318 (1939)
. -....+ ....+.++|||+|..+++. .+++-.. .|+...+||+. ++.+|.|
T Consensus 89 ~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~~~Ll~ 168 (314)
T PRK07399 89 SEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSPESLLP 168 (314)
T ss_pred hhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECChHhCcH
Confidence 0 011111 1246799999999999875 3343332 34455778777 7788999
Q ss_pred ceecc
Q 035724 319 MVESS 323 (1939)
Q Consensus 319 vV~s~ 323 (1939)
++.|.
T Consensus 169 TI~SR 173 (314)
T PRK07399 169 TIVSR 173 (314)
T ss_pred HHHhh
Confidence 98764
No 219
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.22 E-value=0.0064 Score=65.06 Aligned_cols=68 Identities=32% Similarity=0.393 Sum_probs=40.0
Q ss_pred EEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccch-hhHHhh-----------------hccCCcEEEEeCCcccchH-
Q 035724 233 ELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASSS-YKLHRV-----------------AMEQLKFLVIDEAAQLKEV- 293 (1939)
Q Consensus 233 ~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~sss-~~l~~l-----------------~~~~fdvVIIDEASQ~~E~- 293 (1939)
.+|.||||||||+++..+.+.+-.....+.++..+. ..+... ......++++||...+.+.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~~~v 81 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAPPEV 81 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG--HHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCCHHH
Confidence 489999999999999999887744444444443221 111100 0124578999999988843
Q ss_pred -Hhhcccc
Q 035724 294 -ESAIPLK 300 (1939)
Q Consensus 294 -e~lipL~ 300 (1939)
..+.++.
T Consensus 82 ~~~L~~ll 89 (139)
T PF07728_consen 82 LESLLSLL 89 (139)
T ss_dssp HHTTHHHH
T ss_pred HHHHHHHH
Confidence 3444443
No 220
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.18 E-value=0.54 Score=63.18 Aligned_cols=148 Identities=17% Similarity=0.173 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH-hccHHHHHHHHHhhcCHHHHHHHHHhcCCHHHHHHHHHHc-----CCHHH----H
Q 035724 1246 FLEKCAIHYYGLQDKKSMMKFVKS-FRSVDLMRKFLKSLSCFDDLLVLEEESGNFMDAANIARLR-----GDIFL----A 1315 (1939)
Q Consensus 1246 ~le~aa~hy~kagD~k~A~~~~~~-~~s~eeA~~~L~k~~~ldea~ell~e~G~feEAa~Lak~~-----Gk~~e----A 1315 (1939)
.+..-|.||.-.||++.+...... ....+ .......+++-- ...+-..|+|+.|+..+.+. +.+.. -
T Consensus 272 ~l~~LAn~fyfK~dy~~v~~la~~ai~~t~--~~~~~aes~Y~~-gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 272 ALNHLANHFYFKKDYERVWHLAEHAIKNTE--NKSIKAESFYQL-GRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHhhh--hhHHHHHHHHHH-HHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 455668899999997766654331 11111 111222333332 34445689999999988754 33333 3
Q ss_pred HHHHHHhCCHHHHHHHHHHHh-----------hhhccccCCCCCCCCcchhhHHHHHHHHHhHhhhhhHHHHHHHhhhhh
Q 035724 1316 VDLLQKAGCFKEACNVTLNHV-----------ISNSLWSPGSKGWPLKQFTKKKELLEKAKSLAKNESNQFYEFVCTEAD 1384 (1939)
Q Consensus 1316 i~my~kAG~~~eA~rva~~~~-----------~~~~l~~~~~~~~~~~~~~~ae~ll~~A~~~~~~~s~~~~~~~~~e~~ 1384 (1939)
++||++.|+.+.|....+.-. +.-+|-++-...-+ ..++|-+++.++.+-.-..|+.++..+ ++-
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~--~~d~a~~~l~K~~~~~~~d~~a~l~la--ql~ 424 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQE--KRDKASNVLGKVLEQTPVDSEAWLELA--QLL 424 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhH--HHHHHHHHHHHHHhcccccHHHHHHHH--HHH
Confidence 789999999999987666541 33344444332222 248899999999998878888887775 333
Q ss_pred ccccCCCCHHHHHHHH
Q 035724 1385 ILSNDQSDLSIINQQL 1400 (1939)
Q Consensus 1385 ~~~~~~~~~~~~~~~~ 1400 (1939)
...|...+|.-++.-+
T Consensus 425 e~~d~~~sL~~~~~A~ 440 (1018)
T KOG2002|consen 425 EQTDPWASLDAYGNAL 440 (1018)
T ss_pred HhcChHHHHHHHHHHH
Confidence 3557777765555544
No 221
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=96.18 E-value=0.14 Score=61.30 Aligned_cols=181 Identities=16% Similarity=0.196 Sum_probs=101.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhC---CHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC---H-----H
Q 035724 1125 REAAKIFEAIGKADSAAKCFYNLG---EYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF---F-----S 1193 (1939)
Q Consensus 1125 ~eAA~lYe~~G~~~kAaecy~kag---~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd---~-----d 1193 (1939)
...+++|.+-|..++|+++...+- ++--..+. -..-+-|+-|..+|-++.|+++|...-+ | .
T Consensus 73 ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~-------lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~Alq 145 (389)
T COG2956 73 LTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRL-------LALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQ 145 (389)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHH-------HHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHH
Confidence 345667777777777766554322 11110100 1145779999999999999999988744 2 3
Q ss_pred HHHHHHHhcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccH
Q 035724 1194 ECLAVCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRSV 1273 (1939)
Q Consensus 1194 kAI~my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s~ 1273 (1939)
..+.+|.+.+.|++|+..++++..+-..+ ..-.+++.+-|- |..+....|.+.|+..++..-..
T Consensus 146 qLl~IYQ~treW~KAId~A~~L~k~~~q~---------------~~~eIAqfyCEL-Aq~~~~~~~~d~A~~~l~kAlqa 209 (389)
T COG2956 146 QLLNIYQATREWEKAIDVAERLVKLGGQT---------------YRVEIAQFYCEL-AQQALASSDVDRARELLKKALQA 209 (389)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHcCCcc---------------chhHHHHHHHHH-HHHHhhhhhHHHHHHHHHHHHhh
Confidence 35668999999999999999766543322 111234444444 33344455566666655433222
Q ss_pred HHHHHHHHhhcCHHHH---HHHHHhcCCHHHHHHHHH----Hc----CCHHHH-HHHHHHhCCHHHHHHHHHHHh
Q 035724 1274 DLMRKFLKSLSCFDDL---LVLEEESGNFMDAANIAR----LR----GDIFLA-VDLLQKAGCFKEACNVTLNHV 1336 (1939)
Q Consensus 1274 eeA~~~L~k~~~ldea---~ell~e~G~feEAa~Lak----~~----Gk~~eA-i~my~kAG~~~eA~rva~~~~ 1336 (1939)
+ ..+...- .+++...|+|+.|.+..+ +. +...+. .+.|.+-|+.++....+..++
T Consensus 210 ~--------~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~ 276 (389)
T COG2956 210 D--------KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAM 276 (389)
T ss_pred C--------ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 2 1111111 145556677776654332 22 222222 456667777777766665553
No 222
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.17 E-value=0.0092 Score=74.55 Aligned_cols=104 Identities=16% Similarity=0.221 Sum_probs=58.6
Q ss_pred EEEeCCCCCchhHHHHHHHHH--HhcCCcEEEEcccchhh-H--Hhh-hccCCcEEEEeCCcccchH--Hhhcccc----
Q 035724 233 ELIWGPPGTGKTKTVSMLLDF--CFTKASLIFCTASSSYK-L--HRV-AMEQLKFLVIDEAAQLKEV--ESAIPLK---- 300 (1939)
Q Consensus 233 ~LI~GPPGTGKTtti~~li~~--~l~~a~vI~~T~sss~~-l--~~l-~~~~fdvVIIDEASQ~~E~--e~lipL~---- 300 (1939)
.++.||||||||++..++... |... -..|.+.-.. + ..+ .....|+||+||.+.++.. ...+...
T Consensus 212 li~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~~~~lg~v~~~DlLI~DEvgylp~~~~~~~v~imK~yM 288 (449)
T TIGR02688 212 LIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNISTRQIGLVGRWDVVAFDEVATLKFAKPKELIGILKNYM 288 (449)
T ss_pred EEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcCCchHHHHHHHHHHH
Confidence 488999999999999987744 4443 1122221111 1 111 2357899999999986443 2222220
Q ss_pred -----------CCCcceEEEEeccccCCcce------eccccccccccCCHHHHHHh
Q 035724 301 -----------LPGIQHAILIGDECQLPAMV------ESSVSGEACLGRSLFERLSN 340 (1939)
Q Consensus 301 -----------~~~~~rlVLiGD~~QLpPvV------~s~~~~~~gl~~SLFeRL~~ 340 (1939)
.....-+|++|...|-.+.. .+...+... +..+++|+.-
T Consensus 289 esg~fsRG~~~~~a~as~vfvGNi~~~v~~~~~~~~Lf~~lP~~~~-DsAflDRiH~ 344 (449)
T TIGR02688 289 ESGSFTRGDETKSSDASFVFLGNVPLTSEHMVKNSDLFSPLPEFMR-DSAFLDRIHG 344 (449)
T ss_pred HhCceeccceeeeeeeEEEEEcccCCcchhhcCcccccccCChhhh-hhHHHHhhhc
Confidence 11245789999887743321 122222222 5567788763
No 223
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.16 E-value=0.012 Score=70.33 Aligned_cols=42 Identities=24% Similarity=0.253 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 210 NDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
++..++.+..++..... +...+|.||||||||+++..+.+.+
T Consensus 4 t~~~~~l~~~~l~~l~~---g~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 4 TDAVKRVTSRALRYLKS---GYPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred CHHHHHHHHHHHHHHhc---CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 44555555555543321 3455899999999999999888644
No 224
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=96.15 E-value=0.32 Score=68.15 Aligned_cols=27 Identities=11% Similarity=0.090 Sum_probs=17.7
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHh
Q 035724 1064 SPEEWKSRGIKLFHEHNYDMATICFEKA 1091 (1939)
Q Consensus 1064 tpeeW~~lG~~l~~q~~yd~A~kcF~rA 1091 (1939)
.+..|..+|..+.. ++.++|+.+|.++
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~A 502 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQA 502 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHH
Confidence 55667777766655 6666677766654
No 225
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.13 E-value=0.014 Score=65.94 Aligned_cols=95 Identities=19% Similarity=0.205 Sum_probs=54.4
Q ss_pred CCCcEEEEeCCCCCchhHHHHHHHHHHhcC----------------------CcEEEEccc----chhhHH----hh---
Q 035724 228 HKATVELIWGPPGTGKTKTVSMLLDFCFTK----------------------ASLIFCTAS----SSYKLH----RV--- 274 (1939)
Q Consensus 228 ~~~~v~LI~GPPGTGKTtti~~li~~~l~~----------------------a~vI~~T~s----ss~~l~----~l--- 274 (1939)
..++..|++||||+|||+++..+++.++.. .++...... +.-... ..
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~ 91 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRT 91 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccC
Confidence 345778999999999999999998776532 122222111 111111 01
Q ss_pred -hccCCcEEEEeCCcccchH--HhhccccC--CCcceEEEEe-ccccCCcceec
Q 035724 275 -AMEQLKFLVIDEAAQLKEV--ESAIPLKL--PGIQHAILIG-DECQLPAMVES 322 (1939)
Q Consensus 275 -~~~~fdvVIIDEASQ~~E~--e~lipL~~--~~~~rlVLiG-D~~QLpPvV~s 322 (1939)
......+|||||+..++.. ..++.... +....+|++- +...+.|.+.+
T Consensus 92 ~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~s 145 (188)
T TIGR00678 92 PQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRS 145 (188)
T ss_pred cccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHh
Confidence 1245689999999888764 33333322 2234555543 55666665543
No 226
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.13 E-value=0.011 Score=74.02 Aligned_cols=63 Identities=17% Similarity=0.305 Sum_probs=42.5
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHh-----cCCcEEEEcccc--hh---hHHh----------------------hhcc
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCF-----TKASLIFCTASS--SY---KLHR----------------------VAME 277 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l-----~~a~vI~~T~ss--s~---~l~~----------------------l~~~ 277 (1939)
+.+.++.||+|+|||||++.++..+. ...+|.+.|+.+ .. ++.. ....
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 56889999999999999999986553 234565554433 11 1110 0225
Q ss_pred CCcEEEEeCCcccch
Q 035724 278 QLKFLVIDEAAQLKE 292 (1939)
Q Consensus 278 ~fdvVIIDEASQ~~E 292 (1939)
.+|+||||+|+....
T Consensus 254 ~~DlVLIDTaGr~~~ 268 (388)
T PRK12723 254 DFDLVLVDTIGKSPK 268 (388)
T ss_pred CCCEEEEcCCCCCcc
Confidence 689999999998763
No 227
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.13 E-value=0.16 Score=67.04 Aligned_cols=156 Identities=15% Similarity=0.151 Sum_probs=88.7
Q ss_pred HHHHHHhCCHHHHHHHHHHh-cC----hHHHHHHHHHHHHcCCHHHHHHHHHHcc---CHHHHHHHHHhcCChHHHHHHH
Q 035724 1141 AKCFYNLGEYERAGRIYLER-RE----EPELEKAGECFFLAGCYKLAADVYAKGK---FFSECLAVCSKGKLFEIGLQYM 1212 (1939)
Q Consensus 1141 aecy~kag~~~~A~eLY~e~-~~----e~~~~qaAe~fE~~G~y~eAAelY~kag---d~dkAI~my~k~k~fd~airLv 1212 (1939)
+.+..+-.+|+-|+.+++.. ++ .+.++++|.++...|+|++|..-|.+.- +....|.-|.+.+...+...++
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YL 420 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYL 420 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHH
Confidence 33444444555555555432 11 1347889999999999999999999873 3445555554544444444444
Q ss_pred HhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhc------cHHHHHHHHHhhcCH
Q 035724 1213 NHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFR------SVDLMRKFLKSLSCF 1286 (1939)
Q Consensus 1213 ~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~------s~eeA~~~L~k~~~l 1286 (1939)
+..-+. +++.+ +....--.+|.+++|.+...+++...+ ..|.|.+++.+-+++
T Consensus 421 e~L~~~------------gla~~---------dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 421 EALHKK------------GLANS---------DHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYL 479 (933)
T ss_pred HHHHHc------------ccccc---------hhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChH
Confidence 422211 11111 111111456999999999999999888 344455555555555
Q ss_pred HHHHHHHHhcCCHHHHHHHH-HHcCCHHHHHH
Q 035724 1287 DDLLVLEEESGNFMDAANIA-RLRGDIFLAVD 1317 (1939)
Q Consensus 1287 dea~ell~e~G~feEAa~La-k~~Gk~~eAi~ 1317 (1939)
+++.-++.+.++.+.+.++. +..|++.+|.+
T Consensus 480 ~~a~~LA~k~~~he~vl~ille~~~ny~eAl~ 511 (933)
T KOG2114|consen 480 DEAELLATKFKKHEWVLDILLEDLHNYEEALR 511 (933)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHhcCHHHHHH
Confidence 55555544444444444432 22344444444
No 228
>PRK14974 cell division protein FtsY; Provisional
Probab=96.11 E-value=0.012 Score=72.43 Aligned_cols=36 Identities=28% Similarity=0.376 Sum_probs=27.6
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHhcC-CcEEEEcc
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCFTK-ASLIFCTA 265 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l~~-a~vI~~T~ 265 (1939)
+.+.++.||||+|||||++.++..+... .+|++.++
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~ 176 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAG 176 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 5688999999999999999998665543 45655543
No 229
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.10 E-value=0.006 Score=78.29 Aligned_cols=103 Identities=20% Similarity=0.231 Sum_probs=61.6
Q ss_pred CCCCcEEEEeCCCCCchhHHHHHHHHHH--hcCC--------------------cEEEEcccc---hhhHHhh-------
Q 035724 227 DHKATVELIWGPPGTGKTKTVSMLLDFC--FTKA--------------------SLIFCTASS---SYKLHRV------- 274 (1939)
Q Consensus 227 ~~~~~v~LI~GPPGTGKTtti~~li~~~--l~~a--------------------~vI~~T~ss---s~~l~~l------- 274 (1939)
+...+-++..||-||||||++..+++.+ .... +||-.-..+ .-....+
T Consensus 35 ~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~ 114 (515)
T COG2812 35 GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYA 114 (515)
T ss_pred CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccC
Confidence 3445678999999999999998887433 2211 111111000 0001111
Q ss_pred -hccCCcEEEEeCCcccchH--HhhccccCCCcceEEEE---eccccCCcceeccccccccc
Q 035724 275 -AMEQLKFLVIDEAAQLKEV--ESAIPLKLPGIQHAILI---GDECQLPAMVESSVSGEACL 330 (1939)
Q Consensus 275 -~~~~fdvVIIDEASQ~~E~--e~lipL~~~~~~rlVLi---GD~~QLpPvV~s~~~~~~gl 330 (1939)
-..++.+.||||+.|++.. .+++-...-+..++++| -|++-+|++|.|. ++.+.|
T Consensus 115 P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSR-cq~f~f 175 (515)
T COG2812 115 PSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSR-CQRFDF 175 (515)
T ss_pred CccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhc-cccccc
Confidence 2367899999999999876 33333333344565554 5888999999775 343433
No 230
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.10 E-value=0.0061 Score=77.52 Aligned_cols=78 Identities=18% Similarity=0.252 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcC-----CcEEEEcccch------h------hHHhhh
Q 035724 213 QAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTK-----ASLIFCTASSS------Y------KLHRVA 275 (1939)
Q Consensus 213 Q~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~-----a~vI~~T~sss------~------~l~~l~ 275 (1939)
|.++|..++..... ..-.+|.||||||||+++..+....-.. .++-+.|++.. . ++....
T Consensus 25 re~vI~lll~aala---g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~ 101 (498)
T PRK13531 25 RSHAIRLCLLAALS---GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLT 101 (498)
T ss_pred cHHHHHHHHHHHcc---CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhc
Confidence 44455555443321 3456999999999999999887644321 11222222110 0 010111
Q ss_pred cc---CCcEEEEeCCcccchH
Q 035724 276 ME---QLKFLVIDEAAQLKEV 293 (1939)
Q Consensus 276 ~~---~fdvVIIDEASQ~~E~ 293 (1939)
.+ ..+++++||...++..
T Consensus 102 ~G~L~~A~lLfLDEI~rasp~ 122 (498)
T PRK13531 102 SGYLPEAEIVFLDEIWKAGPA 122 (498)
T ss_pred CCccccccEEeecccccCCHH
Confidence 12 4579999999988876
No 231
>COG0507 RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair]
Probab=96.10 E-value=0.0032 Score=85.13 Aligned_cols=45 Identities=31% Similarity=0.354 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcCC
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTKA 258 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~a 258 (1939)
+.-+++|..|....+. .+..++.|+||||||++++.++..+....
T Consensus 200 ~~~~~~r~~a~~~~~~-------~~~~~~~~G~~t~~~~~i~kl~~~l~~~~ 244 (696)
T COG0507 200 PGNSPERIRAAALALL-------EEFSLISGGPGTGKTTTIAKLLLKLLEQP 244 (696)
T ss_pred CCCChHHHHHHHHHHH-------HHHHhhcCCCceeeHHHHHHHHHHHhccc
Confidence 3457888888887777 46778889999999999999987776655
No 232
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.10 E-value=0.013 Score=71.71 Aligned_cols=110 Identities=13% Similarity=0.131 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhc------CCcEEEEcc-----cchhhHHhh-----
Q 035724 211 DSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFT------KASLIFCTA-----SSSYKLHRV----- 274 (1939)
Q Consensus 211 ~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~------~a~vI~~T~-----sss~~l~~l----- 274 (1939)
+...+.+...+. .+..++..|+.||+|+|||+++..+++.++. +.++..... .+.-+...+
T Consensus 10 ~~~~~~l~~~~~---~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~~~~~ 86 (313)
T PRK05564 10 ENIKNRIKNSII---KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNIIEEVN 86 (313)
T ss_pred HHHHHHHHHHHH---cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHHHHHh
Confidence 334444445544 2345678899999999999999999876542 224422211 111111111
Q ss_pred ---hccCCcEEEEeCCcccchH--HhhccccC--CCcceEEEEe-ccccCCcceecc
Q 035724 275 ---AMEQLKFLVIDEAAQLKEV--ESAIPLKL--PGIQHAILIG-DECQLPAMVESS 323 (1939)
Q Consensus 275 ---~~~~fdvVIIDEASQ~~E~--e~lipL~~--~~~~rlVLiG-D~~QLpPvV~s~ 323 (1939)
......++|||+|..+++. .+++.... ++...+||+. ++.+|+|++.|.
T Consensus 87 ~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SR 143 (313)
T PRK05564 87 KKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSR 143 (313)
T ss_pred cCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhh
Confidence 1245689999999988874 44444432 2345666664 567888888654
No 233
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.06 E-value=0.0097 Score=75.42 Aligned_cols=61 Identities=18% Similarity=0.335 Sum_probs=41.5
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHHhc---CCcEEEEcccchhh-H-----------HhhhccCCcEEEEeCCcccc
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFCFT---KASLIFCTASSSYK-L-----------HRVAMEQLKFLVIDEAAQLK 291 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~l~---~a~vI~~T~sss~~-l-----------~~l~~~~fdvVIIDEASQ~~ 291 (1939)
+..+|+||||||||+++.++...+.. ...++..++..... . ........|+|+|||...+.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~ 212 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLA 212 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhc
Confidence 45699999999999999999877765 35677665432110 0 00012357999999998654
No 234
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.013 Score=73.26 Aligned_cols=50 Identities=24% Similarity=0.373 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcC
Q 035724 208 TLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTK 257 (1939)
Q Consensus 208 ~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~ 257 (1939)
.-=++|...+..++...-.+..+.-.+|.||||||||.|+..+.+.+...
T Consensus 20 ~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~ 69 (366)
T COG1474 20 PHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEES 69 (366)
T ss_pred cccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhh
Confidence 34578888888888765434444447999999999999999998666544
No 235
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.05 E-value=0.021 Score=72.42 Aligned_cols=97 Identities=24% Similarity=0.290 Sum_probs=67.9
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEE--------------------ccc
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFC--------------------TAS 266 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~--------------------T~s 266 (1939)
..+++.|...+..++.. +.++.|+.||.|+|||||+-.++..+.....-|+. ...
T Consensus 240 Lg~~~~~~~~~~~~~~~-----p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~gI~Q~qVN~k~gl 314 (500)
T COG2804 240 LGMSPFQLARLLRLLNR-----PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQLPGINQVQVNPKIGL 314 (500)
T ss_pred hCCCHHHHHHHHHHHhC-----CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeecCCcceeecccccCC
Confidence 35688999999999985 47899999999999999999999777665553332 011
Q ss_pred c-hhhHHhhhccCCcEEEEeCCcccchHHhhccccCCCcceEEEE
Q 035724 267 S-SYKLHRVAMEQLKFLVIDEAAQLKEVESAIPLKLPGIQHAILI 310 (1939)
Q Consensus 267 s-s~~l~~l~~~~fdvVIIDEASQ~~E~e~lipL~~~~~~rlVLi 310 (1939)
+ +..+..+-...+|+++|.|.--.-.++..+-.++. .|+||-
T Consensus 315 tfa~~LRa~LRqDPDvImVGEIRD~ETAeiavqAalT--GHLVlS 357 (500)
T COG2804 315 TFARALRAILRQDPDVIMVGEIRDLETAEIAVQAALT--GHLVLS 357 (500)
T ss_pred CHHHHHHHHhccCCCeEEEeccCCHHHHHHHHHHHhc--CCeEee
Confidence 1 11223333457899999998877666666554443 467663
No 236
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.04 E-value=0.015 Score=77.18 Aligned_cols=110 Identities=18% Similarity=0.207 Sum_probs=58.3
Q ss_pred HHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhc-----------------------CCcEEEEcccch-
Q 035724 213 QAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFT-----------------------KASLIFCTASSS- 268 (1939)
Q Consensus 213 Q~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~-----------------------~a~vI~~T~sss- 268 (1939)
|..++....+....+..++..|++||||+|||+++..+++.+.- +.+++.-.+.+.
T Consensus 22 q~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~~~~ 101 (614)
T PRK14971 22 QEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHELDAASNN 101 (614)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEecccccC
Confidence 44444433333323445677899999999999977766654431 112222111110
Q ss_pred --hhHHhh--------hccCCcEEEEeCCcccchH--HhhccccC--CCcceEEEEec-cccCCcceec
Q 035724 269 --YKLHRV--------AMEQLKFLVIDEAAQLKEV--ESAIPLKL--PGIQHAILIGD-ECQLPAMVES 322 (1939)
Q Consensus 269 --~~l~~l--------~~~~fdvVIIDEASQ~~E~--e~lipL~~--~~~~rlVLiGD-~~QLpPvV~s 322 (1939)
-....+ ....+.++|||||..++.. ..++.... ++...+||+-+ ...+.|++.|
T Consensus 102 ~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~S 170 (614)
T PRK14971 102 SVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILS 170 (614)
T ss_pred CHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHh
Confidence 111111 1245689999999998864 33433332 23445666664 3445555433
No 237
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.04 E-value=0.0098 Score=71.91 Aligned_cols=59 Identities=29% Similarity=0.239 Sum_probs=35.7
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHhc-----CCcEEEEcccch---------hhHH-hhhccCCcEEEEeCCccc
Q 035724 232 VELIWGPPGTGKTKTVSMLLDFCFT-----KASLIFCTASSS---------YKLH-RVAMEQLKFLVIDEAAQL 290 (1939)
Q Consensus 232 v~LI~GPPGTGKTtti~~li~~~l~-----~a~vI~~T~sss---------~~l~-~l~~~~fdvVIIDEASQ~ 290 (1939)
..+++||||||||+++..+.+.+.. ...++.+++..- .... .+....-.+|+|||+..+
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~~gvL~iDEi~~L 133 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRAMGGVLFIDEAYYL 133 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHHccCcEEEEechhhh
Confidence 4699999999999999877755532 223444432111 0000 112223479999999866
No 238
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=96.04 E-value=0.31 Score=61.85 Aligned_cols=21 Identities=14% Similarity=0.023 Sum_probs=11.5
Q ss_pred HHHHHHhhCHHHHHHHHHHhC
Q 035724 1072 GIKLFHEHNYDMATICFEKAK 1092 (1939)
Q Consensus 1072 G~~l~~q~~yd~A~kcF~rAg 1092 (1939)
|..+..+|+++.|...|.++.
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~ 145 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAA 145 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 333355566666666666554
No 239
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=96.03 E-value=0.016 Score=70.12 Aligned_cols=38 Identities=21% Similarity=0.110 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLL 251 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li 251 (1939)
...++.|..-++++.. +.+.+=.||.|||||.+++...
T Consensus 127 ~~kt~~Q~~y~eai~~-------~di~fGiGpAGTGKTyLava~a 164 (348)
T COG1702 127 IPKTPGQNMYPEAIEE-------HDIVFGIGPAGTGKTYLAVAKA 164 (348)
T ss_pred EecChhHHHHHHHHHh-------cCeeeeecccccCChhhhHHhH
Confidence 4579999999999988 6788999999999999997766
No 240
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=96.03 E-value=0.016 Score=77.43 Aligned_cols=44 Identities=27% Similarity=0.360 Sum_probs=32.9
Q ss_pred CCCCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHH
Q 035724 205 LSSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSM 249 (1939)
Q Consensus 205 ~~~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~ 249 (1939)
..+.|++.|++|+..++...... .+--.|++||.|||||.+...
T Consensus 232 lpf~lt~~Q~~ai~~I~~~~~~~-~~~~~Ll~g~TGSGKT~va~l 275 (630)
T TIGR00643 232 LPFKLTRAQKRVVKEILQDLKSD-VPMNRLLQGDVGSGKTLVAAL 275 (630)
T ss_pred CCCCCCHHHHHHHHHHHHHhccC-CCccEEEECCCCCcHHHHHHH
Confidence 34689999999999999854211 112359999999999987643
No 241
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=96.02 E-value=0.017 Score=65.58 Aligned_cols=34 Identities=24% Similarity=0.190 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTV 247 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti 247 (1939)
..+++.|++|+..++.. .-.+|.+|+|+|||.+.
T Consensus 20 ~~~~~~Q~~~~~~~~~~-------~~~li~~~TG~GKT~~~ 53 (203)
T cd00268 20 EKPTPIQARAIPPLLSG-------RDVIGQAQTGSGKTAAF 53 (203)
T ss_pred CCCCHHHHHHHHHHhcC-------CcEEEECCCCCcHHHHH
Confidence 35799999999999872 33699999999999773
No 242
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.01 E-value=1 Score=58.36 Aligned_cols=304 Identities=14% Similarity=0.063 Sum_probs=154.4
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHhCC---cchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHc-CCHHH
Q 035724 1064 SPEEWKSRGIKLFHEHNYDMATICFEKAKD---SYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAI-GKADS 1139 (1939)
Q Consensus 1064 tpeeW~~lG~~l~~q~~yd~A~kcF~rAgd---~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~-G~~~k 1139 (1939)
-...|..-|+.+.+...++-|+..|..|-. ....-|.+|.++...- ...++-...+++|..+--++ +..-.
T Consensus 515 ~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~h-----gt~Esl~Allqkav~~~pkae~lwlM 589 (913)
T KOG0495|consen 515 RKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSH-----GTRESLEALLQKAVEQCPKAEILWLM 589 (913)
T ss_pred hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhc-----CcHHHHHHHHHHHHHhCCcchhHHHH
Confidence 345899999999999999999999998754 2233355555432110 01111122222222221111 11112
Q ss_pred HHHHHHHhCCHHHHHHHHHHh----cChHH-HHHHHHHHHHcCCHHHHHHHHHHccC-------HHHHHHHHHhcCChHH
Q 035724 1140 AAKCFYNLGEYERAGRIYLER----REEPE-LEKAGECFFLAGCYKLAADVYAKGKF-------FSECLAVCSKGKLFEI 1207 (1939)
Q Consensus 1140 Aaecy~kag~~~~A~eLY~e~----~~e~~-~~qaAe~fE~~G~y~eAAelY~kagd-------~dkAI~my~k~k~fd~ 1207 (1939)
-++-+..+|+...|-.+..++ ..+.. |--+-..--...+++.|-.++.++-. |-|-+.+-.-.++.++
T Consensus 590 ~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~ee 669 (913)
T KOG0495|consen 590 YAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEE 669 (913)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHH
Confidence 233333444444444443322 11111 22222333344567777777766632 3444444445566677
Q ss_pred HHHHHHh----hhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCC--------HHHHHHHHHHhccHHH
Q 035724 1208 GLQYMNH----WKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQD--------KKSMMKFVKSFRSVDL 1275 (1939)
Q Consensus 1208 airLv~q----~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD--------~k~A~~~~~~~~s~ee 1275 (1939)
|+++++. |++... +.-..-+++. ..+..+.|+..|...-. |-...+.=..-+..-.
T Consensus 670 A~rllEe~lk~fp~f~K-----------l~lmlGQi~e-~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~r 737 (913)
T KOG0495|consen 670 ALRLLEEALKSFPDFHK-----------LWLMLGQIEE-QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVR 737 (913)
T ss_pred HHHHHHHHHHhCCchHH-----------HHHHHhHHHH-HHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhh
Confidence 7777762 222100 0000000000 01133444444443221 1111100001111111
Q ss_pred HHHHHHh--------hcCHHHHHHHHHhcCCHHHHHHHHHHc-------C-CHHHHHHHHHHhCCHHHHHHHHHHHh-hh
Q 035724 1276 MRKFLKS--------LSCFDDLLVLEEESGNFMDAANIARLR-------G-DIFLAVDLLQKAGCFKEACNVTLNHV-IS 1338 (1939)
Q Consensus 1276 A~~~L~k--------~~~ldea~ell~e~G~feEAa~Lak~~-------G-k~~eAi~my~kAG~~~eA~rva~~~~-~~ 1338 (1939)
|+.+|.+ -..+-+.+.+..+.|+.+.|..++-+. | -+.||+.|.-+.++-..+...+.+.- -.
T Consensus 738 AR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dp 817 (913)
T KOG0495|consen 738 ARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDP 817 (913)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCc
Confidence 3333321 123456778889999999996544332 3 56889999999999888877666552 66
Q ss_pred hccccCCCCCCCCcchhhHHHHHHHHHhHhhhhhHHHHHHHhhhhh
Q 035724 1339 NSLWSPGSKGWPLKQFTKKKELLEKAKSLAKNESNQFYEFVCTEAD 1384 (1939)
Q Consensus 1339 ~~l~~~~~~~~~~~~~~~ae~ll~~A~~~~~~~s~~~~~~~~~e~~ 1384 (1939)
.||.+=|+..|..+++.||-+-|.||-+.--..-..+--|.-.|+.
T Consensus 818 hVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~ 863 (913)
T KOG0495|consen 818 HVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELR 863 (913)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHH
Confidence 6777777777777889999999999988433333333333345555
No 243
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.00 E-value=0.012 Score=73.29 Aligned_cols=63 Identities=24% Similarity=0.371 Sum_probs=42.6
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHh-c-C-CcEEEEcccch----h-hHHh----------------------hhccC
Q 035724 229 KATVELIWGPPGTGKTKTVSMLLDFCF-T-K-ASLIFCTASSS----Y-KLHR----------------------VAMEQ 278 (1939)
Q Consensus 229 ~~~v~LI~GPPGTGKTtti~~li~~~l-~-~-a~vI~~T~sss----~-~l~~----------------------l~~~~ 278 (1939)
...+.++.||+|+|||||+..|+..+. . . .+|.+.|+.+. . ++.. .....
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 357899999999999999999996543 3 2 35655554331 0 1100 12246
Q ss_pred CcEEEEeCCcccc
Q 035724 279 LKFLVIDEAAQLK 291 (1939)
Q Consensus 279 fdvVIIDEASQ~~ 291 (1939)
+|+|+||+++...
T Consensus 216 ~DlVLIDTaG~~~ 228 (374)
T PRK14722 216 KHMVLIDTIGMSQ 228 (374)
T ss_pred CCEEEEcCCCCCc
Confidence 7999999999774
No 244
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.00 E-value=0.016 Score=78.03 Aligned_cols=46 Identities=24% Similarity=0.290 Sum_probs=34.1
Q ss_pred CCCCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHH
Q 035724 205 LSSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLL 251 (1939)
Q Consensus 205 ~~~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li 251 (1939)
..+.|++.|++|+..++....... +.-.|++||.|||||.+....+
T Consensus 258 l~f~lt~~Q~~ai~~I~~d~~~~~-~~~~Ll~~~TGSGKT~va~~~i 303 (681)
T PRK10917 258 LPFELTGAQKRVVAEILADLASPK-PMNRLLQGDVGSGKTVVAALAA 303 (681)
T ss_pred CCCCCCHHHHHHHHHHHHhhhccC-CceEEEECCCCCcHHHHHHHHH
Confidence 356799999999999998543211 1235999999999998765443
No 245
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.99 E-value=0.02 Score=73.52 Aligned_cols=82 Identities=16% Similarity=0.257 Sum_probs=51.3
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHHhc---CCcEEEEcccchhh------------HHhh--hccCCcEEEEeCCcccch-
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFCFT---KASLIFCTASSSYK------------LHRV--AMEQLKFLVIDEAAQLKE- 292 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~l~---~a~vI~~T~sss~~------------l~~l--~~~~fdvVIIDEASQ~~E- 292 (1939)
+..+|+||||||||+++.++...+.. ..+|+..|+..... ...+ .....|+|||||+..+.-
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~k 221 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSYK 221 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccCC
Confidence 44699999999999999988876543 46777665432111 0001 124689999999987752
Q ss_pred -H--Hhhccc---cCCCcceEEEEec
Q 035724 293 -V--ESAIPL---KLPGIQHAILIGD 312 (1939)
Q Consensus 293 -~--e~lipL---~~~~~~rlVLiGD 312 (1939)
. +.+..+ .....+++|+.+|
T Consensus 222 ~~~~e~lf~l~N~~~~~~k~iIltsd 247 (450)
T PRK14087 222 EKTNEIFFTIFNNFIENDKQLFFSSD 247 (450)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEECC
Confidence 1 222222 1123467888877
No 246
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.97 E-value=0.42 Score=58.82 Aligned_cols=151 Identities=13% Similarity=0.066 Sum_probs=77.9
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHH-----
Q 035724 1069 KSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKC----- 1143 (1939)
Q Consensus 1069 ~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaec----- 1143 (1939)
...|-.++++++++.|+...+--.......-..|.........+.-+ . ....-..-|.+-..+.+|.-|+..
T Consensus 423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqgg-k--~~~~aqqyad~aln~dryn~~a~~nkgn~ 499 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGG-K--DFADAQQYADIALNIDRYNAAALTNKGNI 499 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcc-c--chhHHHHHHHHHhcccccCHHHhhcCCce
Confidence 34566788999999998655432211111111111111111111000 0 001112223333445555555432
Q ss_pred HHHhCCHHHHHHHHHHhcChH-----HHHHHHHHHHHcCCHHHHHHHHHHccC--------HHHHHHHHHhcCChHHHHH
Q 035724 1144 FYNLGEYERAGRIYLERREEP-----ELEKAGECFFLAGCYKLAADVYAKGKF--------FSECLAVCSKGKLFEIGLQ 1210 (1939)
Q Consensus 1144 y~kag~~~~A~eLY~e~~~e~-----~~~qaAe~fE~~G~y~eAAelY~kagd--------~dkAI~my~k~k~fd~air 1210 (1939)
-+..|++++|.+.|++++.+. .+=.+|--+++.|+.++|.++|.|.+- .-....+|.-..+..+|++
T Consensus 500 ~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred eeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 234678888888888764432 244557778888888888888877633 1223346666666667777
Q ss_pred HHHhhhhccccc
Q 035724 1211 YMNHWKQHADTD 1222 (1939)
Q Consensus 1211 Lv~q~~d~l~~~ 1222 (1939)
+.-+-....+.+
T Consensus 580 ~~~q~~slip~d 591 (840)
T KOG2003|consen 580 LLMQANSLIPND 591 (840)
T ss_pred HHHHhcccCCCC
Confidence 766554444444
No 247
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.97 E-value=0.087 Score=68.05 Aligned_cols=147 Identities=19% Similarity=0.158 Sum_probs=94.3
Q ss_pred cCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhH-----Hh-----h----hhhhcCCchHhHHHHHHH
Q 035724 1062 ASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLK-----AT-----A----DRCRSSNPKQANVNLREA 1127 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~-----e~-----a----~~~~s~~~~ea~~~y~eA 1127 (1939)
..+|+.|...|.-+=-|+++++|++||+||..... .++-||-+. .+ + +.....++.- -..|...
T Consensus 418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh-YnAwYGl 495 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH-YNAWYGL 495 (638)
T ss_pred CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh-hHHHHhh
Confidence 67899999999988889999999999999975332 233333221 00 0 0001112221 1235556
Q ss_pred HHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcCh-HHHHHHHHHHHHcCCHHHHHHHHHHcc---------CHHHHHH
Q 035724 1128 AKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREE-PELEKAGECFFLAGCYKLAADVYAKGK---------FFSECLA 1197 (1939)
Q Consensus 1128 A~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e-~~~~qaAe~fE~~G~y~eAAelY~kag---------d~dkAI~ 1197 (1939)
+-.|.+.++++.|.-.|.+| +++ . ..+ ..+--+|..+++.|+.++|.++|.+|= .|.+ +.
T Consensus 496 G~vy~Kqek~e~Ae~~fqkA------~~I--N-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~-~~ 565 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAEFHFQKA------VEI--N-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR-AS 565 (638)
T ss_pred hhheeccchhhHHHHHHHhh------hcC--C-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH-HH
Confidence 66777777777775554443 333 0 111 124566889999999999999999982 2433 45
Q ss_pred HHHhcCChHHHHHHHHhhhhccc
Q 035724 1198 VCSKGKLFEIGLQYMNHWKQHAD 1220 (1939)
Q Consensus 1198 my~k~k~fd~airLv~q~~d~l~ 1220 (1939)
++.-.+.+++|++.+++.++..+
T Consensus 566 il~~~~~~~eal~~LEeLk~~vP 588 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELVP 588 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhCc
Confidence 56677888999999987665433
No 248
>PRK06620 hypothetical protein; Validated
Probab=95.95 E-value=0.017 Score=67.09 Aligned_cols=75 Identities=15% Similarity=0.176 Sum_probs=42.1
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccchhhHHhhhccCCcEEEEeCCcccchHHhhccc--cCCCcceEE
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASSSYKLHRVAMEQLKFLVIDEAAQLKEVESAIPL--KLPGIQHAI 308 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~sss~~l~~l~~~~fdvVIIDEASQ~~E~e~lipL--~~~~~~rlV 308 (1939)
+..+|+||||+||||++..+.... ...+.+.. ..... .....|+++|||+....+.+....+ .....++++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~----~~~~~~~~--~~~~~-~~~~~d~lliDdi~~~~~~~lf~l~N~~~e~g~~il 117 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS----NAYIIKDI--FFNEE-ILEKYNAFIIEDIENWQEPALLHIFNIINEKQKYLL 117 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc----CCEEcchh--hhchh-HHhcCCEEEEeccccchHHHHHHHHHHHHhcCCEEE
Confidence 457999999999999998754322 11221111 00011 1135699999999865432222111 112346777
Q ss_pred EEec
Q 035724 309 LIGD 312 (1939)
Q Consensus 309 LiGD 312 (1939)
+.||
T Consensus 118 its~ 121 (214)
T PRK06620 118 LTSS 121 (214)
T ss_pred EEcC
Confidence 7777
No 249
>KOG1804 consensus RNA helicase [RNA processing and modification]
Probab=95.95 E-value=0.0034 Score=83.27 Aligned_cols=190 Identities=25% Similarity=0.265 Sum_probs=129.4
Q ss_pred EEeCCCCCchhHHH--HHHH------HHHhcCCcEEEEcccchh--hHHhhhccCCcEEEEeCCcccchHHhhccccCC-
Q 035724 234 LIWGPPGTGKTKTV--SMLL------DFCFTKASLIFCTASSSY--KLHRVAMEQLKFLVIDEAAQLKEVESAIPLKLP- 302 (1939)
Q Consensus 234 LI~GPPGTGKTtti--~~li------~~~l~~a~vI~~T~sss~--~l~~l~~~~fdvVIIDEASQ~~E~e~lipL~~~- 302 (1939)
++++.|+++++-.+ ..+. ..+++ .+|++.|...+. .........+.+.+.|||.++.++..+.|++.+
T Consensus 212 l~~~~pvv~~~~~if~~~~~~~~pq~~~~~~-Hrv~~~~~~~s~~~~~l~~~~~~~t~~~~~eaae~~~~~~l~P~~~~~ 290 (775)
T KOG1804|consen 212 LAQVNPVVLQYCFIFDSHITFRRPQVEDLFK-HRVVVVTLSQSQYLTPLGLPVGFFTHILLDEAAQAMECELLMPLALPS 290 (775)
T ss_pred ccccCCceeeeeeeccchhhhccchhhhhcc-cceeEeecceeecccccCCCCCceeeeeHHHHHhcCCceeecccccCC
Confidence 89999999998533 2222 34455 777777765543 233445577899999999999999999998765
Q ss_pred CcceEEEEeccccCCcceeccccccccccCCHHHHHHh----cCCccccccccccCChhhhccCcccccCCCCCCCCccc
Q 035724 303 GIQHAILIGDECQLPAMVESSVSGEACLGRSLFERLSN----LGQAKHLLSIQYRMHPSISSFPNSYFYDNKIFDSPNVK 378 (1939)
Q Consensus 303 ~~~rlVLiGD~~QLpPvV~s~~~~~~gl~~SLFeRL~~----~~~~~~~L~~QYRmhp~I~~f~S~~FY~gkL~~~~~v~ 378 (1939)
..++++|+||+.||-|.+.+....+..+. .+..|+.. .+.+.+-.+.+||++-.|..|.+..||....-. ...
T Consensus 291 ~~~~~~L~~~~~ql~~~l~s~~~~~~~~~-~~~~~~~~~y~~~~p~~~g~~~n~~~a~~~v~~~~~~~~il~~~p--~~a 367 (775)
T KOG1804|consen 291 SGTRIVLAGPHLQLTPFLNSVAREEQALH-LLLCRLPEPYIVFGPPGTGKTENYREAIAIVSFTSPHFYILVCAP--SNA 367 (775)
T ss_pred CCceeeecccccccccchhhhhhhhhhhh-hcccccccccccccCCCcCCccchHHHHHHHHhcchHHHhhcccc--ccc
Confidence 46899999999999998866554433332 22222222 145667789999999999999999999754332 221
Q ss_pred ccccccccCCCCCCCCeEEEEcCCCccc--cCCCCcCCHHHHHHHHHHHHHHHHcC
Q 035724 379 EKNYEKRFLPGRMYGPYSFINVLDGREE--SIAHSYRNMVEVFVVMKILLNLYKVH 432 (1939)
Q Consensus 379 ~~~~~~~~l~~p~~~p~~Fidv~~G~Ee--~~g~S~~N~~EA~~V~~lV~~L~~~~ 432 (1939)
.-... ..+...|..|... .|... .....+.|..|+.-++.-++.+.+.+
T Consensus 368 ~~k~~----~~rl~~p~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~e~~~~~~ 418 (775)
T KOG1804|consen 368 SGKQP----AHRLHYPLTFSTA-RGEDVRAKSSTAWYNNAEVSEVVEKVEELRKVW 418 (775)
T ss_pred ccccc----ccccccccccccc-ccccccccchhHHhhhHHHHHHHHHHHHHhhcc
Confidence 11111 1111346677766 45443 44456889999999999999988553
No 250
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.91 E-value=0.017 Score=76.65 Aligned_cols=27 Identities=37% Similarity=0.426 Sum_probs=22.5
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHh
Q 035724 229 KATVELIWGPPGTGKTKTVSMLLDFCF 255 (1939)
Q Consensus 229 ~~~v~LI~GPPGTGKTtti~~li~~~l 255 (1939)
.++..|++||||+|||+++..+++.+.
T Consensus 37 i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 37 VAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 355679999999999999999986653
No 251
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.90 E-value=0.026 Score=67.53 Aligned_cols=44 Identities=27% Similarity=0.323 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhc
Q 035724 208 TLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFT 256 (1939)
Q Consensus 208 ~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~ 256 (1939)
.+.+.|.+++..++... ..+.+|.||+|+|||||+.+++..+..
T Consensus 63 g~~~~~~~~l~~~~~~~-----~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 63 GLKPENLEIFRKLLEKP-----HGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred CCCHHHHHHHHHHHhcC-----CCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 57889999998888632 578999999999999999999877654
No 252
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=95.87 E-value=0.014 Score=74.55 Aligned_cols=34 Identities=32% Similarity=0.341 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTV 247 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti 247 (1939)
..+++.|.+|+..++.. .. .++.+|+|||||...
T Consensus 22 ~~p~~iQ~~ai~~~~~g------~d-~l~~apTGsGKT~~~ 55 (434)
T PRK11192 22 TRPTAIQAEAIPPALDG------RD-VLGSAPTGTGKTAAF 55 (434)
T ss_pred CCCCHHHHHHHHHHhCC------CC-EEEECCCCChHHHHH
Confidence 35788999999999973 23 699999999999863
No 253
>PRK05642 DNA replication initiation factor; Validated
Probab=95.87 E-value=0.021 Score=67.13 Aligned_cols=61 Identities=11% Similarity=0.242 Sum_probs=41.1
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHHhc-CCcEEEEcccchhhH---HhhhccCCcEEEEeCCcccc
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFCFT-KASLIFCTASSSYKL---HRVAMEQLKFLVIDEAAQLK 291 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~l~-~a~vI~~T~sss~~l---~~l~~~~fdvVIIDEASQ~~ 291 (1939)
+..+|+||+|||||+++.++...+.. ..+++..+....... ........|++|||+.....
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d~LiiDDi~~~~ 110 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNLEQYELVCLDDLDVIA 110 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHHHHHhhhhCCEEEEechhhhc
Confidence 56699999999999999988765543 466666554322111 11123457999999998663
No 254
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.86 E-value=0.014 Score=63.04 Aligned_cols=31 Identities=26% Similarity=0.435 Sum_probs=22.8
Q ss_pred EEEeCCCCCchhHHHHHHHHHHh-cCCcEEEE
Q 035724 233 ELIWGPPGTGKTKTVSMLLDFCF-TKASLIFC 263 (1939)
Q Consensus 233 ~LI~GPPGTGKTtti~~li~~~l-~~a~vI~~ 263 (1939)
.+|.||||||||+++..++.... ....+++.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~ 33 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYV 33 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEE
Confidence 58999999999999998885443 23444443
No 255
>PRK01172 ski2-like helicase; Provisional
Probab=95.85 E-value=0.017 Score=78.09 Aligned_cols=36 Identities=22% Similarity=0.169 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSM 249 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~ 249 (1939)
..|++.|.+|+..+.+ ..-.+|.+|.|+|||.....
T Consensus 21 ~~l~~~Q~~ai~~l~~-------~~nvlv~apTGSGKTl~a~l 56 (674)
T PRK01172 21 FELYDHQRMAIEQLRK-------GENVIVSVPTAAGKTLIAYS 56 (674)
T ss_pred CCCCHHHHHHHHHHhc-------CCcEEEECCCCchHHHHHHH
Confidence 4689999999998765 23469999999999987543
No 256
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.85 E-value=0.021 Score=73.44 Aligned_cols=61 Identities=20% Similarity=0.379 Sum_probs=41.8
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHHhc---CCcEEEEcccchhh-H-----------HhhhccCCcEEEEeCCcccc
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFCFT---KASLIFCTASSSYK-L-----------HRVAMEQLKFLVIDEAAQLK 291 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~l~---~a~vI~~T~sss~~-l-----------~~l~~~~fdvVIIDEASQ~~ 291 (1939)
+..+|+||||||||+++.++...+.. ..+++..++..... + ........|+|+|||+..+.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~ 224 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLA 224 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhc
Confidence 45699999999999999999877665 35666655432111 0 00122368999999998663
No 257
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.80 E-value=0.019 Score=65.75 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=24.2
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHh-cCCcEEEE
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCF-TKASLIFC 263 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l-~~a~vI~~ 263 (1939)
+.+.++-||+|+|||||++.+...+. ++.+|-+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~li 35 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALI 35 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceee
Confidence 35789999999999999999984443 34455443
No 258
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.78 E-value=0.03 Score=68.81 Aligned_cols=96 Identities=14% Similarity=0.122 Sum_probs=60.7
Q ss_pred CCCcEEEEeCCCCCchhHHHHHHHHHHhc----------------------CCcEEEEccc-----chhhHHhh------
Q 035724 228 HKATVELIWGPPGTGKTKTVSMLLDFCFT----------------------KASLIFCTAS-----SSYKLHRV------ 274 (1939)
Q Consensus 228 ~~~~v~LI~GPPGTGKTtti~~li~~~l~----------------------~a~vI~~T~s-----ss~~l~~l------ 274 (1939)
..++-.|++||+|+||++++..+++.++- +.++...... +.-+...+
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~ 101 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQ 101 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhh
Confidence 44667899999999999999988855432 2333332221 11111111
Q ss_pred --hccCCcEEEEeCCcccchH--HhhccccC--CCcceEEEEec-cccCCcceecc
Q 035724 275 --AMEQLKFLVIDEAAQLKEV--ESAIPLKL--PGIQHAILIGD-ECQLPAMVESS 323 (1939)
Q Consensus 275 --~~~~fdvVIIDEASQ~~E~--e~lipL~~--~~~~rlVLiGD-~~QLpPvV~s~ 323 (1939)
......++|||+|-.+++. .+++-... ++...+||+.+ +.+|+|++.|.
T Consensus 102 ~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SR 157 (325)
T PRK06871 102 HAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSR 157 (325)
T ss_pred ccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhh
Confidence 2256799999999999876 33333322 34556777776 56899998764
No 259
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.74 E-value=0.053 Score=68.72 Aligned_cols=98 Identities=15% Similarity=0.175 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHHHH
Q 035724 1120 ANVNLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKFFSECLAVC 1199 (1939)
Q Consensus 1120 a~~~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd~dkAI~my 1199 (1939)
....|+..++.+.+.|++..|.+||.++.+|.-..=+|...-+...+...|...+++|...-|--+|...|+++.|++++
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lL 744 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELL 744 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHH
Confidence 45579999999999999999999999999999888887764444558999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHhhhh
Q 035724 1200 SKGKLFEIGLQYMNHWKQ 1217 (1939)
Q Consensus 1200 ~k~k~fd~airLv~q~~d 1217 (1939)
++.+.+-+|.-+++-|..
T Consensus 745 i~t~r~peAal~ArtYlp 762 (794)
T KOG0276|consen 745 ISTQRLPEAALFARTYLP 762 (794)
T ss_pred HhcCcCcHHHHHHhhhCh
Confidence 999888878777774443
No 260
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=95.73 E-value=0.018 Score=74.18 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTV 247 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti 247 (1939)
..+++-|.+|+..++.. .=.++++|.|||||.+.
T Consensus 25 ~~~t~iQ~~ai~~~l~g-------~dvi~~a~TGsGKT~a~ 58 (460)
T PRK11776 25 TEMTPIQAQSLPAILAG-------KDVIAQAKTGSGKTAAF 58 (460)
T ss_pred CCCCHHHHHHHHHHhcC-------CCEEEECCCCCcHHHHH
Confidence 45899999999999973 23699999999999753
No 261
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=95.71 E-value=0.45 Score=53.39 Aligned_cols=154 Identities=12% Similarity=0.045 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccCH--------H
Q 035724 1122 VNLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKFF--------S 1193 (1939)
Q Consensus 1122 ~~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd~--------d 1193 (1939)
..+...+..|...|++++|.+.+.++-... - .....+...|..+...|++++|.++|.++-+. -
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~------p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 103 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD------P--DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLN 103 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------c--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence 345667788888888888888776652110 0 01123556788999999999999999887321 1
Q ss_pred HHHHHHHhcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccH
Q 035724 1194 ECLAVCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRSV 1273 (1939)
Q Consensus 1194 kAI~my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s~ 1273 (1939)
....++...+++++|....++-.+..... . ........+..|...|+.+.|.+++...-..
T Consensus 104 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~---------------~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (234)
T TIGR02521 104 NYGTFLCQQGKYEQAMQQFEQAIEDPLYP---------------Q----PARSLENAGLCALKAGDFDKAEKYLTRALQI 164 (234)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhccccc---------------c----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 22346677888898888887533210000 0 0011122366688889888888776543221
Q ss_pred HHHHHHHHhhcCHHHHHHHHHhcCCHHHHHHHHH
Q 035724 1274 DLMRKFLKSLSCFDDLLVLEEESGNFMDAANIAR 1307 (1939)
Q Consensus 1274 eeA~~~L~k~~~ldea~ell~e~G~feEAa~Lak 1307 (1939)
+.. ....+...+.++...|++++|...++
T Consensus 165 ~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~ 193 (234)
T TIGR02521 165 DPQ-----RPESLLELAELYYLRGQYKDARAYLE 193 (234)
T ss_pred CcC-----ChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 100 00112233455666777777765544
No 262
>PHA02244 ATPase-like protein
Probab=95.69 E-value=0.022 Score=70.39 Aligned_cols=61 Identities=20% Similarity=0.257 Sum_probs=36.3
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEccc-chh----------hHH----hhhccCCcEEEEeCCcccchH
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTAS-SSY----------KLH----RVAMEQLKFLVIDEAAQLKEV 293 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~s-ss~----------~l~----~l~~~~fdvVIIDEASQ~~E~ 293 (1939)
...+|+||||||||+++.++...+- ...+..... ... ... ........++++||...+...
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg--~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~~GgvLiLDEId~a~p~ 195 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALD--LDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFKKGGLFFIDEIDASIPE 195 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhC--CCEEEEecChHHHhhcccccccccccchHHHHHhhcCCEEEEeCcCcCCHH
Confidence 3458899999999999998875531 222221110 000 000 001245689999999988744
No 263
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.67 E-value=0.84 Score=60.23 Aligned_cols=66 Identities=15% Similarity=0.236 Sum_probs=51.4
Q ss_pred HHHHHHHH--HhccHHHHHHHHHhhcCHHHHHHHHHhcCCHHHHHHHHHH-cCCHHHHHHHHHHhCCHH
Q 035724 1261 KSMMKFVK--SFRSVDLMRKFLKSLSCFDDLLVLEEESGNFMDAANIARL-RGDIFLAVDLLQKAGCFK 1326 (1939)
Q Consensus 1261 k~A~~~~~--~~~s~eeA~~~L~k~~~ldea~ell~e~G~feEAa~Lak~-~Gk~~eAi~my~kAG~~~ 1326 (1939)
+....|++ +.-..+.|.+++++.|.++|.+=++.++|+-.+|..+... -+++.+|+++-...+|-+
T Consensus 623 k~LLPFLr~s~~Y~lekA~eiC~q~~~~~E~VYlLgrmGn~k~AL~lII~el~die~AIefvKeq~D~e 691 (846)
T KOG2066|consen 623 KKLLPFLRKSQNYNLEKALEICSQKNFYEELVYLLGRMGNAKEALKLIINELRDIEKAIEFVKEQDDSE 691 (846)
T ss_pred hhhhHHHHhcCCCCHHHHHHHHHhhCcHHHHHHHHHhhcchHHHHHHHHHHhhCHHHHHHHHHhcCCHH
Confidence 44555555 4456677999999999999999999999999999886654 488888998776666543
No 264
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=95.67 E-value=0.023 Score=75.73 Aligned_cols=34 Identities=24% Similarity=0.205 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTV 247 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti 247 (1939)
..+++.|.+++..++.. .-.++++|+|||||.+.
T Consensus 27 ~~ptpiQ~~ai~~ll~g-------~dvl~~ApTGsGKT~af 60 (629)
T PRK11634 27 EKPSPIQAECIPHLLNG-------RDVLGMAQTGSGKTAAF 60 (629)
T ss_pred CCCCHHHHHHHHHHHcC-------CCEEEEcCCCCcHHHHH
Confidence 45799999999999873 33699999999999865
No 265
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=95.65 E-value=0.011 Score=77.86 Aligned_cols=43 Identities=21% Similarity=0.168 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLL 251 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li 251 (1939)
..+=..|..||..+..+... +.+. .||.=.+|||||.|+.+|+
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~-g~~r-aLlvMATGTGKTrTAiaii 206 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSK-GQNR-ALLVMATGTGKTRTAIAII 206 (875)
T ss_pred ccchHHHHHHHHHHHHHHhc-CCce-EEEEEecCCCcceeHHHHH
Confidence 45667899999998886543 3344 7999999999999999998
No 266
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.63 E-value=0.045 Score=68.46 Aligned_cols=43 Identities=26% Similarity=0.281 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHh
Q 035724 213 QAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCF 255 (1939)
Q Consensus 213 Q~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l 255 (1939)
|.+|+....+....+..++-.|++||+|+||++++..+++.++
T Consensus 24 q~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Ll 66 (365)
T PRK07471 24 HAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLL 66 (365)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 5555554444333344566789999999999999999987665
No 267
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.63 E-value=0.028 Score=75.79 Aligned_cols=42 Identities=31% Similarity=0.268 Sum_probs=33.4
Q ss_pred CCCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHH
Q 035724 206 SSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLL 251 (1939)
Q Consensus 206 ~~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li 251 (1939)
...|++.|++|+..++... .....+++||+|+|||.+...++
T Consensus 142 ~~~Lt~~Q~~ai~~i~~~~----~~~~~Ll~~~TGSGKT~v~l~~i 183 (679)
T PRK05580 142 PPTLNPEQAAAVEAIRAAA----GFSPFLLDGVTGSGKTEVYLQAI 183 (679)
T ss_pred CCCCCHHHHHHHHHHHhcc----CCCcEEEECCCCChHHHHHHHHH
Confidence 3579999999999998732 13457999999999998876554
No 268
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.62 E-value=0.01 Score=68.76 Aligned_cols=58 Identities=28% Similarity=0.376 Sum_probs=35.3
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHHh------cCCcEEEE-cccchhhHHhh----hccCCcEEEEeCCc
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFCF------TKASLIFC-TASSSYKLHRV----AMEQLKFLVIDEAA 288 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~l------~~a~vI~~-T~sss~~l~~l----~~~~fdvVIIDEAS 288 (1939)
.-.|.+||||||||.++.++....- +.+.+|.- .+.++.+.+.+ ....+-+++|||--
T Consensus 152 knVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~aPcivFiDE~D 220 (368)
T COG1223 152 KNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAAPCIVFIDELD 220 (368)
T ss_pred ceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhh
Confidence 4459999999999999988873221 11111111 12344455554 23457899999965
No 269
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=95.61 E-value=0.021 Score=72.02 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=20.7
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
+.-.|++||||||||+++.++...+
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~ 189 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHET 189 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHh
Confidence 3346999999999999999887654
No 270
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.60 E-value=0.025 Score=77.97 Aligned_cols=61 Identities=26% Similarity=0.352 Sum_probs=39.6
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHHh--------cCCcEEEEcccc----h-h------hHHhh-----hccCCcEEEEeC
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFCF--------TKASLIFCTASS----S-Y------KLHRV-----AMEQLKFLVIDE 286 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~l--------~~a~vI~~T~ss----s-~------~l~~l-----~~~~fdvVIIDE 286 (1939)
+-.+++||||||||+++..++..+. .+.+++...... . . ++..+ ......+++|||
T Consensus 200 ~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDE 279 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDE 279 (857)
T ss_pred CceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEec
Confidence 3458999999999999999987663 355665532211 1 0 11111 123457999999
Q ss_pred Ccccc
Q 035724 287 AAQLK 291 (1939)
Q Consensus 287 ASQ~~ 291 (1939)
+..+.
T Consensus 280 ih~l~ 284 (857)
T PRK10865 280 LHTMV 284 (857)
T ss_pred HHHhc
Confidence 99886
No 271
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.60 E-value=0.015 Score=66.47 Aligned_cols=84 Identities=15% Similarity=0.190 Sum_probs=49.1
Q ss_pred EEEeCCCCCchhHHHHHHHHHHhcC------CcEEEEcccc---------------------------hhhHHhhhccCC
Q 035724 233 ELIWGPPGTGKTKTVSMLLDFCFTK------ASLIFCTASS---------------------------SYKLHRVAMEQL 279 (1939)
Q Consensus 233 ~LI~GPPGTGKTtti~~li~~~l~~------a~vI~~T~ss---------------------------s~~l~~l~~~~f 279 (1939)
+||-||||+||||++..+.+.+-.. .+|.+....+ .........-.+
T Consensus 140 tLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm~P 219 (308)
T COG3854 140 TLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSMSP 219 (308)
T ss_pred eEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhcCC
Confidence 6999999999999999888544222 2333221110 001111244578
Q ss_pred cEEEEeCCcccchHHhhccccCCCcceEEEEeccccCC
Q 035724 280 KFLVIDEAAQLKEVESAIPLKLPGIQHAILIGDECQLP 317 (1939)
Q Consensus 280 dvVIIDEASQ~~E~e~lipL~~~~~~rlVLiGD~~QLp 317 (1939)
+++||||.+.-.++.++.-....+ -++|---.-.++.
T Consensus 220 EViIvDEIGt~~d~~A~~ta~~~G-Vkli~TaHG~~ie 256 (308)
T COG3854 220 EVIIVDEIGTEEDALAILTALHAG-VKLITTAHGNGIE 256 (308)
T ss_pred cEEEEeccccHHHHHHHHHHHhcC-cEEEEeeccccHH
Confidence 999999999888776655443323 3444333334443
No 272
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.58 E-value=0.019 Score=70.84 Aligned_cols=97 Identities=19% Similarity=0.188 Sum_probs=62.3
Q ss_pred CCCCcEEEEeCCCCCchhHHHHHHHHHHh----------------------cCCcEEEEcccc------hhhHHhh----
Q 035724 227 DHKATVELIWGPPGTGKTKTVSMLLDFCF----------------------TKASLIFCTASS------SYKLHRV---- 274 (1939)
Q Consensus 227 ~~~~~v~LI~GPPGTGKTtti~~li~~~l----------------------~~a~vI~~T~ss------s~~l~~l---- 274 (1939)
+..++-.|++||+|+||++++..+++.++ .+.++...++.. .-+...+
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~ 100 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKL 100 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHH
Confidence 34467789999999999999998885443 223444433221 1111111
Q ss_pred ----hccCCcEEEEeCCcccchH--HhhccccC--CCcceEEEEec-cccCCcceecc
Q 035724 275 ----AMEQLKFLVIDEAAQLKEV--ESAIPLKL--PGIQHAILIGD-ECQLPAMVESS 323 (1939)
Q Consensus 275 ----~~~~fdvVIIDEASQ~~E~--e~lipL~~--~~~~rlVLiGD-~~QLpPvV~s~ 323 (1939)
......++|||+|-.+++. .+++-... ++...+||+-+ +.+|+|+|.|.
T Consensus 101 ~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSR 158 (334)
T PRK07993 101 YEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSR 158 (334)
T ss_pred hhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhc
Confidence 1256799999999999976 34443332 34566777775 57899998765
No 273
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=95.58 E-value=0.92 Score=57.78 Aligned_cols=120 Identities=18% Similarity=0.134 Sum_probs=71.3
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCC-HHH-HHHHHHH
Q 035724 1069 KSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGK-ADS-AAKCFYN 1146 (1939)
Q Consensus 1069 ~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~-~~k-Aaecy~k 1146 (1939)
...|...+..|+|+.|.+...++.+....... ++-+.... .....+...+...+.+|++.+-..+- ... +++++..
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~-~~llaA~a-a~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~ 165 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPVL-NLIKAAEA-AQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLA 165 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHH-HHHHHHHH-HHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH
Confidence 45677888889999999999887653221111 11111111 11123344455555565554433332 233 4778888
Q ss_pred hCCHHHHHHHHHHhcC-----hHHHHHHHHHHHHcCCHHHHHHHHHHcc
Q 035724 1147 LGEYERAGRIYLERRE-----EPELEKAGECFFLAGCYKLAADVYAKGK 1190 (1939)
Q Consensus 1147 ag~~~~A~eLY~e~~~-----e~~~~qaAe~fE~~G~y~eAAelY~kag 1190 (1939)
.|+++.|.+.+..... ...+.-.+..+...|+|++|.+++.+..
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~ 214 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMA 214 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 8888888877665411 1236677888888888888887766553
No 274
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.0083 Score=71.34 Aligned_cols=25 Identities=40% Similarity=0.599 Sum_probs=22.2
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
+++.|+|||||||||++-.++++.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkL 201 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKL 201 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhh
Confidence 6789999999999999999988554
No 275
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=95.54 E-value=0.57 Score=61.15 Aligned_cols=90 Identities=21% Similarity=0.152 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHH--------cCCHHHHHHHHHHccCH
Q 035724 1121 NVNLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFL--------AGCYKLAADVYAKGKFF 1192 (1939)
Q Consensus 1121 ~~~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~--------~G~y~eAAelY~kagd~ 1192 (1939)
...+.+||.+|+..|++.+|...|-.|++|+++..+..+.. ...++.+|+.+-. .|+-.++...| ..+.
T Consensus 935 n~~~~~aa~aye~~gK~~Ea~gay~sA~mwrec~si~~q~~-~~e~~~~AE~L~S~l~ve~R~~~da~~i~l~y--l~N~ 1011 (1243)
T COG5290 935 NLYHISAAKAYEVEGKYIEAHGAYDSALMWRECGSISTQEK-GYEFNLCAELLPSDLLVEFRKAGDAEKILLTY--LENL 1011 (1243)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhc-chHHHHHHHhhhhhHHHHHHHhcCHHHHHHHH--HhCH
Confidence 34678999999999999999999999999999999877632 2336666654333 33333333333 3566
Q ss_pred HHHHHHHHhcCChHHHHHHHH
Q 035724 1193 SECLAVCSKGKLFEIGLQYMN 1213 (1939)
Q Consensus 1193 dkAI~my~k~k~fd~airLv~ 1213 (1939)
..|+.|++|+-.|++|+..+.
T Consensus 1012 ~eava~~ckgs~y~ea~~~a~ 1032 (1243)
T COG5290 1012 YEAVAMDCKGSEYREAFCEAM 1032 (1243)
T ss_pred HHHHHHHcccccchHHHHHHH
Confidence 777777888888887777765
No 276
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.53 E-value=0.024 Score=58.53 Aligned_cols=58 Identities=19% Similarity=0.300 Sum_probs=37.0
Q ss_pred EEeCCCCCchhHHHHHHHHHHhcCC-----cEEEEcccchhhHHhhhccCCcEEEEeCCcccchH
Q 035724 234 LIWGPPGTGKTKTVSMLLDFCFTKA-----SLIFCTASSSYKLHRVAMEQLKFLVIDEAAQLKEV 293 (1939)
Q Consensus 234 LI~GPPGTGKTtti~~li~~~l~~a-----~vI~~T~sss~~l~~l~~~~fdvVIIDEASQ~~E~ 293 (1939)
.|+||||+|||+++..+++.+++.. .-+.....+..-..... .=.++|+||.++....
T Consensus 2 ~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~--~q~vvi~DD~~~~~~~ 64 (107)
T PF00910_consen 2 WIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQ--GQPVVIIDDFGQDNDG 64 (107)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccC--CCcEEEEeecCccccc
Confidence 6899999999999999887766432 23332222111111111 3378999999988753
No 277
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=95.52 E-value=0.025 Score=79.38 Aligned_cols=43 Identities=26% Similarity=0.183 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLL 251 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li 251 (1939)
..|=+.|.+||..+..+... . .+=.||+.|.|||||.|+..++
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~-g-~r~~Ll~maTGSGKT~tai~li 454 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVE-G-QREILLAMATGTGKTRTAIALM 454 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHh-c-cCCeEEEeCCCCCHHHHHHHHH
Confidence 46788999999888764321 1 2336999999999999987666
No 278
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.019 Score=69.55 Aligned_cols=54 Identities=30% Similarity=0.473 Sum_probs=32.3
Q ss_pred EEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccc--------hhhH----Hhh-hccCCcEEEEeCCc
Q 035724 233 ELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASS--------SYKL----HRV-AMEQLKFLVIDEAA 288 (1939)
Q Consensus 233 ~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~ss--------s~~l----~~l-~~~~fdvVIIDEAS 288 (1939)
.|++||||||||-++.+.+... +|..|-..++- +.++ ..+ +...+.+|+|||.-
T Consensus 188 VLLYGPPGTGKTLLAkAVA~~T--~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEID 254 (406)
T COG1222 188 VLLYGPPGTGKTLLAKAVANQT--DATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEID 254 (406)
T ss_pred eEeeCCCCCcHHHHHHHHHhcc--CceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechh
Confidence 5999999999999998776321 22222211111 1111 111 44678999999975
No 279
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.48 E-value=0.064 Score=68.39 Aligned_cols=63 Identities=24% Similarity=0.346 Sum_probs=42.7
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHh---cCCcEEEEcccchh-----hHHh---------------------h-hccCC
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCF---TKASLIFCTASSSY-----KLHR---------------------V-AMEQL 279 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l---~~a~vI~~T~sss~-----~l~~---------------------l-~~~~f 279 (1939)
..+.++.||+|+|||||++.++..+. ...+|.+.|+.+.. ++.. + ....+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 35788899999999999999885543 34567666554310 1110 0 12468
Q ss_pred cEEEEeCCcccch
Q 035724 280 KFLVIDEAAQLKE 292 (1939)
Q Consensus 280 dvVIIDEASQ~~E 292 (1939)
|+||||.++....
T Consensus 301 DlVlIDt~G~~~~ 313 (424)
T PRK05703 301 DVILIDTAGRSQR 313 (424)
T ss_pred CEEEEeCCCCCCC
Confidence 9999999988654
No 280
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=95.40 E-value=0.044 Score=75.70 Aligned_cols=44 Identities=18% Similarity=0.129 Sum_probs=32.8
Q ss_pred CCCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHH
Q 035724 206 SSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSML 250 (1939)
Q Consensus 206 ~~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~l 250 (1939)
...+++.|.+||..++..+....+ .=.+|+||.|+|||.++...
T Consensus 449 ~f~~T~~Q~~aI~~I~~d~~~~~~-~d~Ll~adTGsGKT~val~a 492 (926)
T TIGR00580 449 PFEETPDQLKAIEEIKADMESPRP-MDRLVCGDVGFGKTEVAMRA 492 (926)
T ss_pred CCCCCHHHHHHHHHHHhhhcccCc-CCEEEECCCCccHHHHHHHH
Confidence 346899999999999986532111 12499999999999876543
No 281
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.34 E-value=0.033 Score=75.85 Aligned_cols=62 Identities=29% Similarity=0.272 Sum_probs=38.5
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHh--------cCCcEEEEcccch-----------hhHHhh----hccCCcEEEEe
Q 035724 229 KATVELIWGPPGTGKTKTVSMLLDFCF--------TKASLIFCTASSS-----------YKLHRV----AMEQLKFLVID 285 (1939)
Q Consensus 229 ~~~v~LI~GPPGTGKTtti~~li~~~l--------~~a~vI~~T~sss-----------~~l~~l----~~~~fdvVIID 285 (1939)
.+++ ++.||||||||+++..+++.+. .+.+++....++. .++..+ ......+++||
T Consensus 203 ~~n~-lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiD 281 (731)
T TIGR02639 203 KNNP-LLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFID 281 (731)
T ss_pred CCce-EEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEe
Confidence 3444 8999999999999999987653 3445554321111 011111 12346799999
Q ss_pred CCcccc
Q 035724 286 EAAQLK 291 (1939)
Q Consensus 286 EASQ~~ 291 (1939)
|...+.
T Consensus 282 Eih~l~ 287 (731)
T TIGR02639 282 EIHTIV 287 (731)
T ss_pred cHHHHh
Confidence 998764
No 282
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.34 E-value=0.033 Score=67.31 Aligned_cols=38 Identities=26% Similarity=0.373 Sum_probs=28.9
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHh-c--CCcEEEEcccc
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCF-T--KASLIFCTASS 267 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l-~--~a~vI~~T~ss 267 (1939)
+.+.+|.||+|+|||||+..++..+. + ..+|.+.|+..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 45788999999999999999986554 3 25676666543
No 283
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.013 Score=71.26 Aligned_cols=56 Identities=34% Similarity=0.405 Sum_probs=34.6
Q ss_pred EEEeCCCCCchhHHHHHHHHHHhcCCcEEEE-cccchh-----hHHhh-----hccCCcEEEEeCCc
Q 035724 233 ELIWGPPGTGKTKTVSMLLDFCFTKASLIFC-TASSSY-----KLHRV-----AMEQLKFLVIDEAA 288 (1939)
Q Consensus 233 ~LI~GPPGTGKTtti~~li~~~l~~a~vI~~-T~sss~-----~l~~l-----~~~~fdvVIIDEAS 288 (1939)
.|.+||||||||.++.++...|-...--|-+ |.++-. ++.++ ..--+.+|+|||.-
T Consensus 248 vLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEID 314 (491)
T KOG0738|consen 248 VLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEID 314 (491)
T ss_pred eeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHH
Confidence 5999999999999999998777532222222 222211 12221 23456899999854
No 284
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=95.32 E-value=0.022 Score=71.32 Aligned_cols=24 Identities=38% Similarity=0.580 Sum_probs=20.4
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHH
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
.-.+|+||||||||+++.++...+
T Consensus 157 ~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhC
Confidence 336999999999999999988654
No 285
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.013 Score=71.28 Aligned_cols=83 Identities=29% Similarity=0.332 Sum_probs=46.6
Q ss_pred CCCCCHHHHHHHHHHHhccc--CCCCCc--EEEEeCCCCCchhHHHHHHHHH------HhcCCcEEEEcccchhhHHhh-
Q 035724 206 SSTLNDSQAQAVLSCLRRTH--CDHKAT--VELIWGPPGTGKTKTVSMLLDF------CFTKASLIFCTASSSYKLHRV- 274 (1939)
Q Consensus 206 ~~~LN~sQ~~AV~~~L~~~~--~~~~~~--v~LI~GPPGTGKTtti~~li~~------~l~~a~vI~~T~sss~~l~~l- 274 (1939)
+.-|.++=..-|..+..+.. -.|..+ -.+.+||||||||..+..|.+. ++...+|--........+|.+
T Consensus 356 ~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaVTkiH~lF 435 (630)
T KOG0742|consen 356 GVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAVTKIHKLF 435 (630)
T ss_pred CeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHHHHHHHHH
Confidence 44566766666665554331 112222 2599999999999999998843 223333322111122233333
Q ss_pred ----hccCCcEEEEeCCc
Q 035724 275 ----AMEQLKFLVIDEAA 288 (1939)
Q Consensus 275 ----~~~~fdvVIIDEAS 288 (1939)
+...-=+++||||-
T Consensus 436 DWakkS~rGLllFIDEAD 453 (630)
T KOG0742|consen 436 DWAKKSRRGLLLFIDEAD 453 (630)
T ss_pred HHHhhcccceEEEehhhH
Confidence 22344589999985
No 286
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.27 E-value=0.043 Score=71.06 Aligned_cols=45 Identities=27% Similarity=0.302 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhc
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFT 256 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~ 256 (1939)
.++++.|.+.+..++.. +.++.+|.||+|+|||||+.+++..+..
T Consensus 224 Lg~~~~~~~~l~~~~~~-----~~GlilitGptGSGKTTtL~a~L~~l~~ 268 (486)
T TIGR02533 224 LGMSPELLSRFERLIRR-----PHGIILVTGPTGSGKTTTLYAALSRLNT 268 (486)
T ss_pred cCCCHHHHHHHHHHHhc-----CCCEEEEEcCCCCCHHHHHHHHHhccCC
Confidence 46789999999998874 3579999999999999999988866543
No 287
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.27 E-value=0.053 Score=66.33 Aligned_cols=43 Identities=14% Similarity=0.225 Sum_probs=34.8
Q ss_pred CCCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 206 SSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 206 ~~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
+..++++-..+|...+.. +...+|.||||||||+++..+++.+
T Consensus 46 ~y~f~~~~~~~vl~~l~~------~~~ilL~G~pGtGKTtla~~lA~~l 88 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAY------DRRVMVQGYHGTGKSTHIEQIAARL 88 (327)
T ss_pred CccCCHHHHHHHHHHHhc------CCcEEEEeCCCChHHHHHHHHHHHH
Confidence 456788888888888863 3446999999999999999998655
No 288
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.25 E-value=0.022 Score=63.39 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcCC
Q 035724 211 DSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTKA 258 (1939)
Q Consensus 211 ~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~a 258 (1939)
++|.+.+...+. ......++..+|+||||+|||+++.++...+....
T Consensus 6 ~~e~~~l~~~l~-~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~ 52 (185)
T PF13191_consen 6 EEEIERLRDLLD-AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERG 52 (185)
T ss_dssp HHHHHHHHHTTG-GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH-HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 467777888885 33344568889999999999999999886665553
No 289
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.24 E-value=0.011 Score=80.26 Aligned_cols=51 Identities=22% Similarity=0.346 Sum_probs=41.0
Q ss_pred CceEEEEeecccCCCCCEEEEeccCCCCCccccccCCCCCCCCCChhHhhhhhHHHHhhhheeeeccccceEEEeccccc
Q 035724 952 KQALVLTIVESKGLEFQVIHYTSQCCNSPFKHALFDSTSPGSFPSFNEAKHNVLCSELKQLYVAITRTRQRLWIWENMEE 1031 (1939)
Q Consensus 952 ~~~lVmTihesKGLEF~~Vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Elk~LYVA~TRAr~~L~I~d~~~~ 1031 (1939)
..+-.+|+|+|.|.|||.|+++. .. . -..+++|||+||||+++.|+-+.+.
T Consensus 662 ~laYA~TvHKsQGst~~~viv~~--~~-------------------------~--l~r~llYvAiTRar~~~~l~~~~~~ 712 (744)
T TIGR02768 662 DHGYATTIHKSQGVTVDRAFVLA--SK-------------------------S--MDRHLAYVAMTRHRESVQLYAGKED 712 (744)
T ss_pred CceEEeccccccCCccCcEEEec--CC-------------------------c--cccchhhhhhhcccceeEEEEchhh
Confidence 46779999999999999999971 11 0 1467899999999999999976543
No 290
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.19 E-value=0.063 Score=65.95 Aligned_cols=42 Identities=21% Similarity=0.299 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
..+++.|.+.+..++.. ..-.+|.||+|+||||++.+++..+
T Consensus 127 g~~~~~~~~~L~~~v~~------~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 127 KIMTEAQASVIRSAIDS------RLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCCCHHHHHHHHHHHHc------CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34788999999999884 2345999999999999999998766
No 291
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=95.18 E-value=0.039 Score=71.12 Aligned_cols=34 Identities=26% Similarity=0.237 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTV 247 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti 247 (1939)
..+++-|.+|+..++.. .. .++++|.|||||.+.
T Consensus 22 ~~pt~iQ~~ai~~il~g------~d-vlv~apTGsGKTla~ 55 (456)
T PRK10590 22 REPTPIQQQAIPAVLEG------RD-LMASAQTGTGKTAGF 55 (456)
T ss_pred CCCCHHHHHHHHHHhCC------CC-EEEECCCCCcHHHHH
Confidence 46789999999999873 23 599999999999763
No 292
>PRK10689 transcription-repair coupling factor; Provisional
Probab=95.16 E-value=0.044 Score=77.30 Aligned_cols=44 Identities=30% Similarity=0.265 Sum_probs=33.0
Q ss_pred CCCCCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHH
Q 035724 204 SLSSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVS 248 (1939)
Q Consensus 204 ~~~~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~ 248 (1939)
.+...+++.|.+|+..++..+.... +.-.|++||.|+|||.++.
T Consensus 596 ~~~~~~T~~Q~~aI~~il~d~~~~~-~~d~Ll~a~TGsGKT~val 639 (1147)
T PRK10689 596 SFPFETTPDQAQAINAVLSDMCQPL-AMDRLVCGDVGFGKTEVAM 639 (1147)
T ss_pred hCCCCCCHHHHHHHHHHHHHhhcCC-CCCEEEEcCCCcCHHHHHH
Confidence 3445799999999999998643211 2235999999999997654
No 293
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.15 E-value=0.05 Score=74.96 Aligned_cols=82 Identities=21% Similarity=0.240 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhccc--------CCCCCcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccch---------------
Q 035724 212 SQAQAVLSCLRRTH--------CDHKATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASSS--------------- 268 (1939)
Q Consensus 212 sQ~~AV~~~L~~~~--------~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~sss--------------- 268 (1939)
.|..||..+..... .+.+.++.++.||||||||.++.++.+.++....-+++-..+.
T Consensus 570 GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~ 649 (852)
T TIGR03345 570 GQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPP 649 (852)
T ss_pred ChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCC
Confidence 35566665544331 1122345799999999999999999887765432222110000
Q ss_pred --------hh-HHhhhccCCcEEEEeCCcccchH
Q 035724 269 --------YK-LHRVAMEQLKFLVIDEAAQLKEV 293 (1939)
Q Consensus 269 --------~~-l~~l~~~~fdvVIIDEASQ~~E~ 293 (1939)
.. ...+...++++|++||.-.+...
T Consensus 650 gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~ 683 (852)
T TIGR03345 650 GYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPD 683 (852)
T ss_pred CcccccccchHHHHHHhCCCcEEEEechhhcCHH
Confidence 00 12234468899999999877655
No 294
>PRK10436 hypothetical protein; Provisional
Probab=95.13 E-value=0.063 Score=69.02 Aligned_cols=46 Identities=26% Similarity=0.304 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcC
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTK 257 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~ 257 (1939)
-++.+.|.+.+..++... .++.||.||.|+|||||+.+++..+...
T Consensus 200 LG~~~~~~~~l~~~~~~~-----~GliLvtGpTGSGKTTtL~a~l~~~~~~ 245 (462)
T PRK10436 200 LGMTPAQLAQFRQALQQP-----QGLILVTGPTGSGKTVTLYSALQTLNTA 245 (462)
T ss_pred cCcCHHHHHHHHHHHHhc-----CCeEEEECCCCCChHHHHHHHHHhhCCC
Confidence 457889999999888643 6899999999999999999888776444
No 295
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.13 E-value=0.055 Score=78.33 Aligned_cols=123 Identities=15% Similarity=0.177 Sum_probs=79.4
Q ss_pred CCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCC-chhHHHHHHHHHHhcC-CcEEEEcccch--hhHH-----------
Q 035724 208 TLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGT-GKTKTVSMLLDFCFTK-ASLIFCTASSS--YKLH----------- 272 (1939)
Q Consensus 208 ~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGT-GKTtti~~li~~~l~~-a~vI~~T~sss--~~l~----------- 272 (1939)
..+..|.+|+..++... ..+.+++|+.|. |+++++..++...-.. ..|.+-++++. ..+.
T Consensus 413 ~~~~~~~~av~~~~q~~-----~~~~il~g~~G~aG~g~~l~~l~~~a~~~G~~V~glAPt~~a~~~L~~~~gi~~~Tva 487 (1747)
T PRK13709 413 PRTAGYSDAVSVLAQDR-----PSLAIVSGQGGAAGQRERVAELVMMAREQGREVQILAADRRSQMNLKQDERLSGELIT 487 (1747)
T ss_pred ccchhhhHHHHHHhccc-----CcEEEEEcCCcchHHHHHHHHHHHHHHhCCcEEEEEeCcHHHHHHHHHhcCCCcceee
Confidence 34668889999988743 578999999884 7777777666444333 33333222111 1110
Q ss_pred ---hh----hccCCcEEEEeCCcccchHHhhccc--cCCCcceEEEEeccccCCcceeccccccccccCCHHHHHHhcCC
Q 035724 273 ---RV----AMEQLKFLVIDEAAQLKEVESAIPL--KLPGIQHAILIGDECQLPAMVESSVSGEACLGRSLFERLSNLGQ 343 (1939)
Q Consensus 273 ---~l----~~~~fdvVIIDEASQ~~E~e~lipL--~~~~~~rlVLiGD~~QLpPvV~s~~~~~~gl~~SLFeRL~~~~~ 343 (1939)
.+ ...+-+++|||||++++--+..-.+ +.....|+||+||.+|+. ..+.|+-|.+.|.
T Consensus 488 ~~~~l~~~~~~~~~~ilIVDEAg~lsar~m~~Ll~~A~~~~arvVllgd~~Q~a-------------AG~pf~~Lq~aG~ 554 (1747)
T PRK13709 488 GRRQLQEGMAFTPGSTLIVDQAEKLSLKETLTLLDGAARHNVQVLILDSGQRTG-------------TGSALMVLKDAGV 554 (1747)
T ss_pred hhhhhccccCCCCCcEEEEECCCcCCHHHHHHHHHHHHHhCCEEEEECCccccc-------------ccCHHHHHHHcCC
Confidence 00 1234579999999999887655444 334568999999999973 1356888888776
Q ss_pred ccccc
Q 035724 344 AKHLL 348 (1939)
Q Consensus 344 ~~~~L 348 (1939)
..+.+
T Consensus 555 ~t~~~ 559 (1747)
T PRK13709 555 NTYRW 559 (1747)
T ss_pred cEEEE
Confidence 55544
No 296
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=95.11 E-value=0.041 Score=70.22 Aligned_cols=34 Identities=26% Similarity=0.122 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTV 247 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti 247 (1939)
..+++-|.+|+..+++. .. .++++|.|||||.+.
T Consensus 29 ~~pt~iQ~~aip~il~g------~d-vi~~ApTGsGKTla~ 62 (423)
T PRK04837 29 HNCTPIQALALPLTLAG------RD-VAGQAQTGTGKTMAF 62 (423)
T ss_pred CCCCHHHHHHHHHHhCC------Cc-EEEECCCCchHHHHH
Confidence 45789999999999984 23 499999999999754
No 297
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.10 E-value=0.016 Score=61.58 Aligned_cols=84 Identities=19% Similarity=0.157 Sum_probs=43.4
Q ss_pred EEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccch-hhH------------Hhh--hccCCcEEEEeCCcccchH-H-h
Q 035724 233 ELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASSS-YKL------------HRV--AMEQLKFLVIDEAAQLKEV-E-S 295 (1939)
Q Consensus 233 ~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~sss-~~l------------~~l--~~~~fdvVIIDEASQ~~E~-e-~ 295 (1939)
.||+|+||+|||+++..+.+.+-....=|=+|..-. ..+ ..+ .+..-.++++||...++.. + +
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrappktQsA 81 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAPPKTQSA 81 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS-HHHHHH
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCCHHHHHH
Confidence 489999999999999988865433322233332110 000 001 1223479999999999865 2 2
Q ss_pred hccccCCCcceEEEEeccccCCc
Q 035724 296 AIPLKLPGIQHAILIGDECQLPA 318 (1939)
Q Consensus 296 lipL~~~~~~rlVLiGD~~QLpP 318 (1939)
++-.. .-+++-+-|....||.
T Consensus 82 lLeam--~Er~Vt~~g~~~~lp~ 102 (131)
T PF07726_consen 82 LLEAM--EERQVTIDGQTYPLPD 102 (131)
T ss_dssp HHHHH--HHSEEEETTEEEE--S
T ss_pred HHHHH--HcCeEEeCCEEEECCC
Confidence 22111 2367778888999986
No 298
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=95.09 E-value=0.043 Score=77.22 Aligned_cols=34 Identities=21% Similarity=0.411 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHH
Q 035724 212 SQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLL 251 (1939)
Q Consensus 212 sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li 251 (1939)
+.++.|..++.. +++.+|.||||+||||.+-.++
T Consensus 70 ~~~~~Il~~l~~------~~vvii~g~TGSGKTTqlPq~l 103 (1283)
T TIGR01967 70 AKREDIAEAIAE------NQVVIIAGETGSGKTTQLPKIC 103 (1283)
T ss_pred HHHHHHHHHHHh------CceEEEeCCCCCCcHHHHHHHH
Confidence 345677777763 6799999999999999886555
No 299
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=95.08 E-value=0.053 Score=69.39 Aligned_cols=79 Identities=24% Similarity=0.258 Sum_probs=54.4
Q ss_pred EEEEEcChhHHHHHhhhhCCce----------EEEEeecccCCCCCEEEEeccCCCCCccccccCCCCCCCCCChhHhhh
Q 035724 933 QVILVRDDCVRKEISNYVGKQA----------LVLTIVESKGLEFQVIHYTSQCCNSPFKHALFDSTSPGSFPSFNEAKH 1002 (1939)
Q Consensus 933 q~IlVr~~~~k~~i~~~l~~~~----------lVmTihesKGLEF~~Vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1002 (1939)
.+||++=+.++..|...++..| -|-|+-.-.|=|=|.+||--+-+. .... ..
T Consensus 729 IGVITpYegQr~~i~~ym~~~gsl~~~ly~~veVasVDaFQGrEKdfIIlSCVRsn----------~~qg-IG------- 790 (935)
T KOG1802|consen 729 IGVITPYEGQRSYIVNYMQTNGSLHKDLYKEVEVASVDAFQGREKDFIILSCVRSN----------EHQG-IG------- 790 (935)
T ss_pred eeeecccchhHHHHHHHHHhcCccccchhheeEEEeeccccCcccceEEEEEeecc----------cccc-cc-------
Confidence 4899999999999988653333 278888889999998888433222 0000 00
Q ss_pred hhHHHHhhhheeeeccccceEEEeccccc
Q 035724 1003 NVLCSELKQLYVAITRTRQRLWIWENMEE 1031 (1939)
Q Consensus 1003 ~~l~~Elk~LYVA~TRAr~~L~I~d~~~~ 1031 (1939)
-+ .+-|-|=||+||||..|+|+.+-..
T Consensus 791 -Fl-~d~RRlNVaLTRaK~glvivGN~~~ 817 (935)
T KOG1802|consen 791 -FL-NDPRRLNVALTRAKYGLVIVGNPKV 817 (935)
T ss_pred -cc-cCchhhhhhhhhcccceEEecCHHH
Confidence 01 2234577999999999999997643
No 300
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.07 E-value=0.032 Score=73.10 Aligned_cols=83 Identities=16% Similarity=0.278 Sum_probs=52.0
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHHhc---CCcEEEEcccchhh-H-----------HhhhccCCcEEEEeCCcccchH--
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFCFT---KASLIFCTASSSYK-L-----------HRVAMEQLKFLVIDEAAQLKEV-- 293 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~l~---~a~vI~~T~sss~~-l-----------~~l~~~~fdvVIIDEASQ~~E~-- 293 (1939)
+..+|+||+|||||+++.++...+.. ..+|+..++..... + .......+|+||||+...+...
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke~ 394 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKES 394 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCHH
Confidence 34699999999999999999877654 56777766532110 0 0011245799999999866321
Q ss_pred --Hhhccc---cCCCcceEEEEecc
Q 035724 294 --ESAIPL---KLPGIQHAILIGDE 313 (1939)
Q Consensus 294 --e~lipL---~~~~~~rlVLiGD~ 313 (1939)
+.+.-+ .....+++|+.+|.
T Consensus 395 tqeeLF~l~N~l~e~gk~IIITSd~ 419 (617)
T PRK14086 395 TQEEFFHTFNTLHNANKQIVLSSDR 419 (617)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCC
Confidence 111111 12234678888874
No 301
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.03 E-value=0.027 Score=73.36 Aligned_cols=58 Identities=22% Similarity=0.280 Sum_probs=36.0
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccch---------hhHHh----hhccCCcEEEEeCCcccc
Q 035724 232 VELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASSS---------YKLHR----VAMEQLKFLVIDEAAQLK 291 (1939)
Q Consensus 232 v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~sss---------~~l~~----l~~~~fdvVIIDEASQ~~ 291 (1939)
=.|++||||||||+++.+++..+ ...++.++++.. ..+.. .....+.+|+|||+-.+.
T Consensus 90 giLL~GppGtGKT~la~alA~~~--~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~ 160 (495)
T TIGR01241 90 GVLLVGPPGTGKTLLAKAVAGEA--GVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVG 160 (495)
T ss_pred cEEEECCCCCCHHHHHHHHHHHc--CCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhh
Confidence 36999999999999999987553 334444332211 11111 122456799999987553
No 302
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.02 E-value=0.053 Score=74.69 Aligned_cols=78 Identities=24% Similarity=0.209 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHh--------cCCcEEEEcc-------cch----hhHHh
Q 035724 213 QAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCF--------TKASLIFCTA-------SSS----YKLHR 273 (1939)
Q Consensus 213 Q~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l--------~~a~vI~~T~-------sss----~~l~~ 273 (1939)
|..-|..++.....+..+++ ++.||||||||+++..+++.+. .+.+++.... ... .++..
T Consensus 192 r~~ei~~~i~~l~r~~~~n~-lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ 270 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNP-ILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKS 270 (852)
T ss_pred CHHHHHHHHHHHhcCCcCce-eEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHH
Confidence 44445555542222233444 8999999999999998886653 3344442211 111 01111
Q ss_pred ----h-hccCCcEEEEeCCcccc
Q 035724 274 ----V-AMEQLKFLVIDEAAQLK 291 (1939)
Q Consensus 274 ----l-~~~~fdvVIIDEASQ~~ 291 (1939)
. ......+++|||+..+.
T Consensus 271 ii~e~~~~~~~~ILfIDEih~l~ 293 (852)
T TIGR03345 271 VIDEVKASPQPIILFIDEAHTLI 293 (852)
T ss_pred HHHHHHhcCCCeEEEEeChHHhc
Confidence 1 12345699999999885
No 303
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.00 E-value=0.046 Score=67.07 Aligned_cols=97 Identities=12% Similarity=0.161 Sum_probs=60.9
Q ss_pred CCCCcEEEEeCCCCCchhHHHHHHHHHHh---------------------cCCcEEEEccc------chhhHHhh-----
Q 035724 227 DHKATVELIWGPPGTGKTKTVSMLLDFCF---------------------TKASLIFCTAS------SSYKLHRV----- 274 (1939)
Q Consensus 227 ~~~~~v~LI~GPPGTGKTtti~~li~~~l---------------------~~a~vI~~T~s------ss~~l~~l----- 274 (1939)
+..++-.|+.||+|+||++++..+++.++ .+.++....+. +.-+...+
T Consensus 22 ~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~ 101 (319)
T PRK06090 22 GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQ 101 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHh
Confidence 34567789999999999999998885443 12344332221 11111111
Q ss_pred ---hccCCcEEEEeCCcccchH--HhhccccC--CCcceEEEEec-cccCCcceecc
Q 035724 275 ---AMEQLKFLVIDEAAQLKEV--ESAIPLKL--PGIQHAILIGD-ECQLPAMVESS 323 (1939)
Q Consensus 275 ---~~~~fdvVIIDEASQ~~E~--e~lipL~~--~~~~rlVLiGD-~~QLpPvV~s~ 323 (1939)
....+.++|||+|-.+++. .+++-... ++...+||+.+ +.+|.|++.|.
T Consensus 102 ~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SR 158 (319)
T PRK06090 102 ESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSR 158 (319)
T ss_pred hCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhc
Confidence 1245789999999999876 33333322 24456777765 57899998775
No 304
>PRK02362 ski2-like helicase; Provisional
Probab=94.98 E-value=0.043 Score=74.91 Aligned_cols=37 Identities=30% Similarity=0.235 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSM 249 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~ 249 (1939)
..|++.|.+|+...+.. ..=.++..|.|+|||.....
T Consensus 22 ~~l~p~Q~~ai~~~~~~------g~nvlv~APTGSGKTlia~l 58 (737)
T PRK02362 22 EELYPPQAEAVEAGLLD------GKNLLAAIPTASGKTLIAEL 58 (737)
T ss_pred CcCCHHHHHHHHHHHhC------CCcEEEECCCcchHHHHHHH
Confidence 46899999999885542 12359999999999998643
No 305
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.97 E-value=0.048 Score=69.52 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=26.1
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHhcC-CcEEEE
Q 035724 229 KATVELIWGPPGTGKTKTVSMLLDFCFTK-ASLIFC 263 (1939)
Q Consensus 229 ~~~v~LI~GPPGTGKTtti~~li~~~l~~-a~vI~~ 263 (1939)
.+.+.++.||||+|||||++.++..+... .+|.+.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV 129 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLV 129 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEe
Confidence 35678999999999999999998555432 345444
No 306
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.97 E-value=0.079 Score=71.01 Aligned_cols=42 Identities=17% Similarity=0.193 Sum_probs=32.5
Q ss_pred CCCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHH
Q 035724 206 SSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLL 251 (1939)
Q Consensus 206 ~~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li 251 (1939)
...|=+.|++|+...+.. ...+-.+|.-|+|+|||.+...++
T Consensus 253 ~~~LRpYQ~eAl~~~~~~----gr~r~GIIvLPtGaGKTlvai~aa 294 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGN----GRARSGIIVLPCGAGKSLVGVTAA 294 (732)
T ss_pred CCCcCHHHHHHHHHHHhc----CCCCCcEEEeCCCCChHHHHHHHH
Confidence 356788999999988752 112346889999999999987776
No 307
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.96 E-value=0.053 Score=74.96 Aligned_cols=60 Identities=30% Similarity=0.380 Sum_probs=38.0
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHh--------cCCcEEEEcccc-----hh------hHHhh-----hccCCcEEEEeCC
Q 035724 232 VELIWGPPGTGKTKTVSMLLDFCF--------TKASLIFCTASS-----SY------KLHRV-----AMEQLKFLVIDEA 287 (1939)
Q Consensus 232 v~LI~GPPGTGKTtti~~li~~~l--------~~a~vI~~T~ss-----s~------~l~~l-----~~~~fdvVIIDEA 287 (1939)
-.+++||||||||+++..++..+. .+.+++...... .+ ++..+ ......++||||+
T Consensus 196 n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEi 275 (852)
T TIGR03346 196 NPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDEL 275 (852)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccH
Confidence 347899999999999998886653 345555532111 10 11111 1124679999999
Q ss_pred cccc
Q 035724 288 AQLK 291 (1939)
Q Consensus 288 SQ~~ 291 (1939)
..+.
T Consensus 276 h~l~ 279 (852)
T TIGR03346 276 HTLV 279 (852)
T ss_pred HHhh
Confidence 9775
No 308
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=0.029 Score=70.05 Aligned_cols=26 Identities=31% Similarity=0.659 Sum_probs=21.9
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHhcC
Q 035724 232 VELIWGPPGTGKTKTVSMLLDFCFTK 257 (1939)
Q Consensus 232 v~LI~GPPGTGKTtti~~li~~~l~~ 257 (1939)
=+|+.||||||||++|++++..+-..
T Consensus 237 GYLLYGPPGTGKSS~IaAmAn~L~yd 262 (457)
T KOG0743|consen 237 GYLLYGPPGTGKSSFIAAMANYLNYD 262 (457)
T ss_pred cceeeCCCCCCHHHHHHHHHhhcCCc
Confidence 37999999999999999998665433
No 309
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.82 E-value=0.019 Score=73.06 Aligned_cols=60 Identities=28% Similarity=0.337 Sum_probs=41.9
Q ss_pred ccchhhhhhhccCCHHHHHHhhcCCCCCCcccccccCHHHHhhhccCC--cEEEecCCCChHHHHHHHHHHHH
Q 035724 684 VSDSLLLMKFYSLSSGAVSHLLSDRDGGELDLPFEVTDEQLEMILFPK--SSFILGRSGTGKTTILTMKLFQK 754 (1939)
Q Consensus 684 ~~~~~~l~Kf~~~s~~~~~~il~~~~~~~~d~pf~l~~ee~~iI~~p~--~~~vlGrSGTGKTT~~L~kl~~~ 754 (1939)
..++.|.|----=|++-+++|.. -+-+||-+||+++. +.+|-|.+||||||++|-|+==+
T Consensus 189 ~~dEvL~~~Lek~ss~~mrdIV~-----------TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyL 250 (747)
T COG3973 189 GRDEVLQRVLEKNSSAKMRDIVE-----------TIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYL 250 (747)
T ss_pred hHHHHHHHHHHhccchhHHHHHH-----------HhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHH
Confidence 44555554433333444455554 35689999999954 67899999999999999998543
No 310
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.77 E-value=0.1 Score=63.61 Aligned_cols=43 Identities=21% Similarity=0.235 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhc
Q 035724 208 TLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFT 256 (1939)
Q Consensus 208 ~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~ 256 (1939)
.+++.|.+.+..++.. ....+|.||+|+||||++.+++..+..
T Consensus 116 ~~~~~~~~~L~~~v~~------~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 116 IMTAAQRDVLREAVLA------RKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred CCCHHHHHHHHHHHHc------CCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 4678888888888874 345699999999999999999977644
No 311
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=94.76 E-value=0.04 Score=69.69 Aligned_cols=25 Identities=36% Similarity=0.616 Sum_probs=20.9
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
+.-.+++||||||||+++.+++..+
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~l 203 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHHT 203 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhc
Confidence 4456999999999999999887654
No 312
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=94.76 E-value=0.7 Score=62.22 Aligned_cols=99 Identities=14% Similarity=0.102 Sum_probs=56.6
Q ss_pred CchHhHHHHHHHHHHHHHcCCH------HHHHHHHHHhCCHHHHHHHHHHhcCh---------H------HHHHHHHHHH
Q 035724 1116 NPKQANVNLREAAKIFEAIGKA------DSAAKCFYNLGEYERAGRIYLERREE---------P------ELEKAGECFF 1174 (1939)
Q Consensus 1116 ~~~ea~~~y~eAA~lYe~~G~~------~kAaecy~kag~~~~A~eLY~e~~~e---------~------~~~qaAe~fE 1174 (1939)
++......|..|..++++.+.. ..-+-.++.+|++.+|.+...++.+. + .-=..|.+.|
T Consensus 428 d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E 507 (1018)
T KOG2002|consen 428 DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLE 507 (1018)
T ss_pred ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHH
Confidence 3444455566666666666543 11234455666666666665544111 1 0113589999
Q ss_pred HcCCHHHHHHHHHHc-cCHHHHHHHHHh-------cCChHHHHHHHHh
Q 035724 1175 LAGCYKLAADVYAKG-KFFSECLAVCSK-------GKLFEIGLQYMNH 1214 (1939)
Q Consensus 1175 ~~G~y~eAAelY~ka-gd~dkAI~my~k-------~k~fd~airLv~q 1214 (1939)
..+++..|+++|... .++-.=|++|.+ .++..+|..++..
T Consensus 508 ~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~ 555 (1018)
T KOG2002|consen 508 ELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKD 555 (1018)
T ss_pred hhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHH
Confidence 999999999999886 222222333332 2455567777663
No 313
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.75 E-value=0.026 Score=67.05 Aligned_cols=29 Identities=28% Similarity=0.585 Sum_probs=24.8
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHhcC
Q 035724 229 KATVELIWGPPGTGKTKTVSMLLDFCFTK 257 (1939)
Q Consensus 229 ~~~v~LI~GPPGTGKTtti~~li~~~l~~ 257 (1939)
..++.||.||.|+|||||+++++..+-++
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~ 152 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKH 152 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhcc
Confidence 47899999999999999999999665443
No 314
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.75 E-value=0.045 Score=67.40 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=22.3
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 229 KATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 229 ~~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
.+...+||||||||||.++.++...+
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 35678999999999999999888665
No 315
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.75 E-value=0.59 Score=57.56 Aligned_cols=118 Identities=17% Similarity=0.174 Sum_probs=77.1
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHH
Q 035724 1064 SPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKC 1143 (1939)
Q Consensus 1064 tpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaec 1143 (1939)
++...-+.|...|..|+++.|.+.|+.|-...- .........+-.|+..|+.++|.+|
T Consensus 489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~nda----------------------sc~ealfniglt~e~~~~ldeald~ 546 (840)
T KOG2003|consen 489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDA----------------------SCTEALFNIGLTAEALGNLDEALDC 546 (840)
T ss_pred CHHHhhcCCceeeecCcHHHHHHHHHHHHcCch----------------------HHHHHHHHhcccHHHhcCHHHHHHH
Confidence 455666778888999999999999998733111 0111233455566777888888888
Q ss_pred HHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC--------HHHHHHHHHhcCChHHHHHH
Q 035724 1144 FYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF--------FSECLAVCSKGKLFEIGLQY 1211 (1939)
Q Consensus 1144 y~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd--------~dkAI~my~k~k~fd~airL 1211 (1939)
|.++.-.- . -....+.+.|..||...+...|.|+|.+++. ..|..++|.+.|+-.+|++.
T Consensus 547 f~klh~il------~--nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~ 614 (840)
T KOG2003|consen 547 FLKLHAIL------L--NNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQC 614 (840)
T ss_pred HHHHHHHH------H--hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhh
Confidence 87764211 1 1123456778888888888888888888743 46667777777766666654
No 316
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.73 E-value=0.91 Score=48.75 Aligned_cols=121 Identities=17% Similarity=0.218 Sum_probs=80.4
Q ss_pred CHHHHHHHHHhcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHH--
Q 035724 1191 FFSECLAVCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVK-- 1268 (1939)
Q Consensus 1191 d~dkAI~my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~-- 1268 (1939)
++++.|..+.+.+....++.+++..-.... ....+...+++. |.+. +...+++++.
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-----------------~~~~~~~~li~l----y~~~-~~~~ll~~l~~~ 66 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLNS-----------------ENPALQTKLIEL----YAKY-DPQKEIERLDNK 66 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccCc-----------------cchhHHHHHHHH----HHHH-CHHHHHHHHHhc
Confidence 466777777777777888888774322110 011122223333 3333 3455667776
Q ss_pred -HhccHHHHHHHHHhhcCHHHHHHHHHhcCCHHHHHHHHHHc-CCHHHHHHHHHHhCCHHHHHHHHH
Q 035724 1269 -SFRSVDLMRKFLKSLSCFDDLLVLEEESGNFMDAANIARLR-GDIFLAVDLLQKAGCFKEACNVTL 1333 (1939)
Q Consensus 1269 -~~~s~eeA~~~L~k~~~ldea~ell~e~G~feEAa~Lak~~-Gk~~eAi~my~kAG~~~eA~rva~ 1333 (1939)
..-..+.|.+++.+++.+++++-++.+.|++++|.+++..+ +++..|++...+.++.+-..+++.
T Consensus 67 ~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~~~~~~lw~~~~~ 133 (140)
T smart00299 67 SNHYDIEKVGKLCEKAKLYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVKQNNPELWAEVLK 133 (140)
T ss_pred cccCCHHHHHHHHHHcCcHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHhCCCHHHHHHHHH
Confidence 33445668888888888888888888888888888888877 788888888888777776666654
No 317
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=94.72 E-value=0.087 Score=69.64 Aligned_cols=46 Identities=24% Similarity=0.372 Sum_probs=38.1
Q ss_pred CCCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhc
Q 035724 206 SSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFT 256 (1939)
Q Consensus 206 ~~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~ 256 (1939)
..++.+.|.+.+..++... .++.+|.||+|+|||||+.+++..+..
T Consensus 297 ~lg~~~~~~~~l~~~~~~~-----~Glilv~G~tGSGKTTtl~a~l~~~~~ 342 (564)
T TIGR02538 297 KLGFEPDQKALFLEAIHKP-----QGMVLVTGPTGSGKTVSLYTALNILNT 342 (564)
T ss_pred HcCCCHHHHHHHHHHHHhc-----CCeEEEECCCCCCHHHHHHHHHHhhCC
Confidence 3567889999999888743 678999999999999999988876643
No 318
>CHL00176 ftsH cell division protein; Validated
Probab=94.67 E-value=0.06 Score=71.77 Aligned_cols=57 Identities=23% Similarity=0.340 Sum_probs=35.1
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccc---------hhhH----HhhhccCCcEEEEeCCccc
Q 035724 232 VELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASS---------SYKL----HRVAMEQLKFLVIDEAAQL 290 (1939)
Q Consensus 232 v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~ss---------s~~l----~~l~~~~fdvVIIDEASQ~ 290 (1939)
-.|++||||||||+++.++...+ ...++.++++. .... .......+.+|+|||.-.+
T Consensus 218 gVLL~GPpGTGKT~LAralA~e~--~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l 287 (638)
T CHL00176 218 GVLLVGPPGTGKTLLAKAIAGEA--EVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAV 287 (638)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh--CCCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhh
Confidence 46999999999999999987654 23334333221 1111 1112345678888888754
No 319
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=94.67 E-value=1.1 Score=61.57 Aligned_cols=68 Identities=12% Similarity=0.033 Sum_probs=50.6
Q ss_pred HHHHHHhCCHHHHHHHHHHhc-----ChHHHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHHHHHhcCChHHHHHHHHhh
Q 035724 1141 AKCFYNLGEYERAGRIYLERR-----EEPELEKAGECFFLAGCYKLAADVYAKGKFFSECLAVCSKGKLFEIGLQYMNHW 1215 (1939)
Q Consensus 1141 aecy~kag~~~~A~eLY~e~~-----~e~~~~qaAe~fE~~G~y~eAAelY~kagd~dkAI~my~k~k~fd~airLv~q~ 1215 (1939)
+.||-+.|++++|..+|.+.. ....++..|..+... +.++|.++|.+ |+..+...++|.++..+-.++
T Consensus 123 A~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~K------AV~~~i~~kq~~~~~e~W~k~ 195 (906)
T PRK14720 123 AEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKK------AIYRFIKKKQYVGIEEIWSKL 195 (906)
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHH------HHHHHHhhhcchHHHHHHHHH
Confidence 578888888888888887752 124488999999999 99999999865 566677777777666654433
No 320
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=94.65 E-value=0.047 Score=69.68 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=20.9
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
+.-.|++||||||||+++.++...+
T Consensus 217 p~gVLL~GPPGTGKT~LAraIA~el 241 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLAKAVANET 241 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3456999999999999999988654
No 321
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=94.64 E-value=0.023 Score=78.89 Aligned_cols=51 Identities=22% Similarity=0.291 Sum_probs=40.8
Q ss_pred CceEEEEeecccCCCCCEEEEeccCCCCCccccccCCCCCCCCCChhHhhhhhHHHHhhhheeeeccccceEEEeccccc
Q 035724 952 KQALVLTIVESKGLEFQVIHYTSQCCNSPFKHALFDSTSPGSFPSFNEAKHNVLCSELKQLYVAITRTRQRLWIWENMEE 1031 (1939)
Q Consensus 952 ~~~lVmTihesKGLEF~~Vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Elk~LYVA~TRAr~~L~I~d~~~~ 1031 (1939)
..|--+|||+|.|.+||.|++.. +. .-.+.++|||+||||+.+.|+=+...
T Consensus 691 dhaYA~TVHKSQGsT~d~V~vl~--s~---------------------------~ldR~llYVA~TRaR~~~~ly~~~~~ 741 (1102)
T PRK13826 691 DHGYATTIHKSQGATVDRVKVLA--SL---------------------------SLDRHLTYVAMTRHREDLQLYYGRRS 741 (1102)
T ss_pred hheeeeeeecccccccceEEEec--cc---------------------------ccccchhHHhhccccceEEEEEchhh
Confidence 36668999999999999999952 00 02467899999999999999876653
No 322
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.64 E-value=0.071 Score=64.71 Aligned_cols=65 Identities=23% Similarity=0.338 Sum_probs=44.5
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHhc-CCcEEEEcccch--hh----------------------------HH---hh
Q 035724 229 KATVELIWGPPGTGKTKTVSMLLDFCFT-KASLIFCTASSS--YK----------------------------LH---RV 274 (1939)
Q Consensus 229 ~~~v~LI~GPPGTGKTtti~~li~~~l~-~a~vI~~T~sss--~~----------------------------l~---~l 274 (1939)
.+.+.|+.|..|||||||++.+...+.+ +.+|+++.+.+- +. +. .-
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~A 217 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAA 217 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHH
Confidence 4678899999999999999999966543 345555422221 10 11 11
Q ss_pred hccCCcEEEEeCCcccchH
Q 035724 275 AMEQLKFLVIDEAAQLKEV 293 (1939)
Q Consensus 275 ~~~~fdvVIIDEASQ~~E~ 293 (1939)
....+|+|+||=|+.+---
T Consensus 218 kar~~DvvliDTAGRLhnk 236 (340)
T COG0552 218 KARGIDVVLIDTAGRLHNK 236 (340)
T ss_pred HHcCCCEEEEeCcccccCc
Confidence 3467999999999998544
No 323
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.63 E-value=0.021 Score=65.52 Aligned_cols=37 Identities=35% Similarity=0.438 Sum_probs=25.6
Q ss_pred ccCHHHHhhhcc---CCc-EEEecCCCChHHHHHHHHHHHH
Q 035724 718 EVTDEQLEMILF---PKS-SFILGRSGTGKTTILTMKLFQK 754 (1939)
Q Consensus 718 ~l~~ee~~iI~~---p~~-~~vlGrSGTGKTT~~L~kl~~~ 754 (1939)
.|+++|.+.|.. ... ++|-|.|||||||++..=+...
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHh
Confidence 478899999974 333 8999999999999887644443
No 324
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=94.62 E-value=0.17 Score=54.99 Aligned_cols=98 Identities=16% Similarity=0.193 Sum_probs=71.4
Q ss_pred cCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHH
Q 035724 1062 ASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAA 1141 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAa 1141 (1939)
.-.|..|...|..++..|+|++|+.+|.++-.. +|. ....+...|..+...|++++|+
T Consensus 21 ~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~---------------------~P~-~~~a~~~lg~~~~~~g~~~~A~ 78 (144)
T PRK15359 21 SVDPETVYASGYASWQEGDYSRAVIDFSWLVMA---------------------QPW-SWRAHIALAGTWMMLKEYTTAI 78 (144)
T ss_pred HcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------------------CCC-cHHHHHHHHHHHHHHhhHHHHH
Confidence 345767999999999999999999999985221 122 2335677888888899999998
Q ss_pred HHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 035724 1142 KCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKG 1189 (1939)
Q Consensus 1142 ecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~ka 1189 (1939)
.+|.++-..+- .....+-..|.++...|++++|.+.|.++
T Consensus 79 ~~y~~Al~l~p--------~~~~a~~~lg~~l~~~g~~~eAi~~~~~A 118 (144)
T PRK15359 79 NFYGHALMLDA--------SHPEPVYQTGVCLKMMGEPGLAREAFQTA 118 (144)
T ss_pred HHHHHHHhcCC--------CCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88776542110 11234667788889999999999988665
No 325
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=94.62 E-value=0.065 Score=66.19 Aligned_cols=21 Identities=38% Similarity=0.665 Sum_probs=18.5
Q ss_pred EEEeCCCCCchhHHHHHHHHH
Q 035724 233 ELIWGPPGTGKTKTVSMLLDF 253 (1939)
Q Consensus 233 ~LI~GPPGTGKTtti~~li~~ 253 (1939)
.|+.||||||||+++..+...
T Consensus 32 vLl~G~pG~gKT~lar~la~l 52 (334)
T PRK13407 32 VLVFGDRGTGKSTAVRALAAL 52 (334)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 699999999999999888643
No 326
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.62 E-value=0.09 Score=64.88 Aligned_cols=28 Identities=21% Similarity=0.247 Sum_probs=23.1
Q ss_pred CCCcEEEEeCCCCCchhHHHHHHHHHHh
Q 035724 228 HKATVELIWGPPGTGKTKTVSMLLDFCF 255 (1939)
Q Consensus 228 ~~~~v~LI~GPPGTGKTtti~~li~~~l 255 (1939)
..++-.|++||||+|||+++..+++.++
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~ll 46 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALL 46 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHc
Confidence 3456679999999999999999886654
No 327
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.61 E-value=0.14 Score=61.67 Aligned_cols=35 Identities=29% Similarity=0.383 Sum_probs=25.6
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHhcC-CcEEEEc
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCFTK-ASLIFCT 264 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l~~-a~vI~~T 264 (1939)
+.+.++.||||+|||||++.++..+... .+|.+.+
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~ 107 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA 107 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4567777999999999999998555433 4555544
No 328
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.60 E-value=2.5 Score=52.30 Aligned_cols=48 Identities=21% Similarity=0.207 Sum_probs=37.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHH
Q 035724 1287 DDLLVLEEESGNFMDAANIARLRGDIFLAVDLLQKAGCFKEACNVTLNH 1335 (1939)
Q Consensus 1287 dea~ell~e~G~feEAa~Lak~~Gk~~eAi~my~kAG~~~eA~rva~~~ 1335 (1939)
+..++...+.|+..+|......-.. .+-++||.++|+|.+|...|.+.
T Consensus 241 epFv~~~~~~~~~~eA~~yI~k~~~-~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 241 EPFVEACLKYGNKKEASKYIPKIPD-EERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCh-HHHHHHHHHCCCHHHHHHHHHHc
Confidence 4455566778888888776666555 78899999999999999999854
No 329
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=94.60 E-value=0.036 Score=64.47 Aligned_cols=22 Identities=50% Similarity=0.819 Sum_probs=18.9
Q ss_pred CcEEEEeCCCCCchhHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLL 251 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li 251 (1939)
+...+|.|+|||||||++..+.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 4678999999999999997663
No 330
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.58 E-value=0.071 Score=61.10 Aligned_cols=26 Identities=31% Similarity=0.670 Sum_probs=22.5
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHHhc
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFCFT 256 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~l~ 256 (1939)
++.+|.||+|+||||++..++..+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57899999999999999998876653
No 331
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.57 E-value=0.11 Score=63.83 Aligned_cols=41 Identities=24% Similarity=0.435 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 208 TLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 208 ~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
.+++.|.+.+..++.. ....+|.||||+||||++.+++...
T Consensus 132 ~~~~~~~~~L~~~v~~------~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 132 IMTAAQREAIIAAVRA------HRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred CCCHHHHHHHHHHHHc------CCeEEEECCCCCCHHHHHHHHHHhh
Confidence 4678899999888874 3567999999999999999998654
No 332
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=94.56 E-value=1.7 Score=56.96 Aligned_cols=152 Identities=16% Similarity=0.176 Sum_probs=90.8
Q ss_pred HHHhcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHH
Q 035724 1198 VCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRSVDLMR 1277 (1939)
Q Consensus 1198 my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s~eeA~ 1277 (1939)
.|...|++++|+.+|++--+|.++. ..-+.-. |.-|.++||.++|.+++......|-+-
T Consensus 203 hyd~~g~~~~Al~~Id~aI~htPt~--------------------~ely~~K-arilKh~G~~~~Aa~~~~~Ar~LD~~D 261 (517)
T PF12569_consen 203 HYDYLGDYEKALEYIDKAIEHTPTL--------------------VELYMTK-ARILKHAGDLKEAAEAMDEARELDLAD 261 (517)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCc--------------------HHHHHHH-HHHHHHCCCHHHHHHHHHHHHhCChhh
Confidence 3445677777777777433333311 1112222 777899999999998888888888777
Q ss_pred HHHHhhcCHHHHHHHHHhcCCHHHHHHHHHH---cC-C-------------HHHHHHHHHHhCCHHHHHHHHHHHhhhhc
Q 035724 1278 KFLKSLSCFDDLLVLEEESGNFMDAANIARL---RG-D-------------IFLAVDLLQKAGCFKEACNVTLNHVISNS 1340 (1939)
Q Consensus 1278 ~~L~k~~~ldea~ell~e~G~feEAa~Lak~---~G-k-------------~~eAi~my~kAG~~~eA~rva~~~~~~~~ 1340 (1939)
+++.+ .++.++.+.|+.++|.+++.. .+ . ..|.++.|.+.|++-.|++... .|.+.
T Consensus 262 RyiNs-----K~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~--~v~k~ 334 (517)
T PF12569_consen 262 RYINS-----KCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFH--AVLKH 334 (517)
T ss_pred HHHHH-----HHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--HHHHH
Confidence 77764 567888899999999776542 11 1 1467788888888888866543 22222
Q ss_pred cccCCCCCCCCcchhhHHHHHHHHHhHhhhhhHHHHHHHhhhhhcccc
Q 035724 1341 LWSPGSKGWPLKQFTKKKELLEKAKSLAKNESNQFYEFVCTEADILSN 1388 (1939)
Q Consensus 1341 l~~~~~~~~~~~~~~~ae~ll~~A~~~~~~~s~~~~~~~~~e~~~~~~ 1388 (1939)
+ .-|..+|| .+..=.-| |.--+.+++++..|=.+-++
T Consensus 335 f-----~~~~~DQf----DFH~Yc~R--K~t~r~Y~~~L~~ed~l~~~ 371 (517)
T PF12569_consen 335 F-----DDFEEDQF----DFHSYCLR--KMTLRAYVDMLRWEDKLRSH 371 (517)
T ss_pred H-----HHHhcccc----cHHHHHHh--hccHHHHHHHHHHHHHhhcC
Confidence 1 11222222 12222333 44556666776666554443
No 333
>CHL00095 clpC Clp protease ATP binding subunit
Probab=94.55 E-value=0.064 Score=73.95 Aligned_cols=46 Identities=26% Similarity=0.400 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhccc--------CCCCCcEEEEeCCCCCchhHHHHHHHHHHhcC
Q 035724 212 SQAQAVLSCLRRTH--------CDHKATVELIWGPPGTGKTKTVSMLLDFCFTK 257 (1939)
Q Consensus 212 sQ~~AV~~~L~~~~--------~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~ 257 (1939)
.|..||..+..+.. .+.+....++.||||||||+++..+.+.++..
T Consensus 513 GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~ 566 (821)
T CHL00095 513 GQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS 566 (821)
T ss_pred ChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC
Confidence 47777776655431 11112346899999999999999999877643
No 334
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=94.51 E-value=0.12 Score=64.17 Aligned_cols=47 Identities=15% Similarity=0.094 Sum_probs=32.6
Q ss_pred cCCcEEEEeCCcccchH--Hhhcccc-C-CCcceEEEEec-cccCCcceecc
Q 035724 277 EQLKFLVIDEAAQLKEV--ESAIPLK-L-PGIQHAILIGD-ECQLPAMVESS 323 (1939)
Q Consensus 277 ~~fdvVIIDEASQ~~E~--e~lipL~-~-~~~~rlVLiGD-~~QLpPvV~s~ 323 (1939)
..+.++|||+|-.+++. .+++-.. . ++...+||+.. +.+|+|++.|.
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SR 182 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSR 182 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhc
Confidence 56789999999999876 3333332 2 24556777775 47899998774
No 335
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=94.50 E-value=0.066 Score=73.33 Aligned_cols=34 Identities=26% Similarity=0.448 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHH
Q 035724 212 SQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLL 251 (1939)
Q Consensus 212 sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li 251 (1939)
+.+..|..++.. ++..+|+|||||||||.+...+
T Consensus 8 ~~~~~i~~~l~~------~~~vvv~A~TGSGKTt~~pl~l 41 (812)
T PRK11664 8 AVLPELLTALKT------APQVLLKAPTGAGKSTWLPLQL 41 (812)
T ss_pred HHHHHHHHHHHh------CCCEEEEcCCCCCHHHHHHHHH
Confidence 445666677753 4567999999999999886433
No 336
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=94.50 E-value=0.042 Score=62.69 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=20.9
Q ss_pred EEEEeCCCCCchhHHHHHH-HHHHhcCCcEEEE
Q 035724 232 VELIWGPPGTGKTKTVSML-LDFCFTKASLIFC 263 (1939)
Q Consensus 232 v~LI~GPPGTGKTtti~~l-i~~~l~~a~vI~~ 263 (1939)
+.++.|.||+|||..++.. +...++..+.|++
T Consensus 2 I~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t 34 (193)
T PF05707_consen 2 IYLITGKPGSGKSYYAVSYVIIPALKKGRPVYT 34 (193)
T ss_dssp EEEEE--TTSSHHHHHHHHHHH-GGGS---EEE
T ss_pred EEEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE
Confidence 6799999999999998777 6666666666664
No 337
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=0.23 Score=61.21 Aligned_cols=116 Identities=25% Similarity=0.276 Sum_probs=66.4
Q ss_pred cceehcccchHHHHHhhhc---CCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCc---chHHHHHHhhhHHhhhhhhcCCc
Q 035724 1044 SLVQVRQLDDSLAQAMQVA---SSPEEWKSRGIKLFHEHNYDMATICFEKAKDS---YWEGRSKATGLKATADRCRSSNP 1117 (1939)
Q Consensus 1044 ~Lvqv~~lde~l~~~l~v~---StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~---~~~~l~kA~~l~e~a~~~~s~~~ 1117 (1939)
+++|.+.++++...+-... ..-+.|+..|..+|++|+|..|..||..|=.. .....++.|.-+++.. +....+
T Consensus 225 hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~-~rLgrl 303 (486)
T KOG0550|consen 225 HFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVN-IRLGRL 303 (486)
T ss_pred HHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhh-cccCCc
Confidence 4456677777644432221 22468999999999999999999999998542 2223444444333321 222334
Q ss_pred hHhHHHHHHHHHHHHH-cCCHHHHHHHHHHhCCHHHHHHHHHHh
Q 035724 1118 KQANVNLREAAKIFEA-IGKADSAAKCFYNLGEYERAGRIYLER 1160 (1939)
Q Consensus 1118 ~ea~~~y~eAA~lYe~-~G~~~kAaecy~kag~~~~A~eLY~e~ 1160 (1939)
.++.....+|+++=.. +.-+-.+++|+..++.|+.|++-|.++
T Consensus 304 ~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 304 REAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred hhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555543221 112344566666666666666666553
No 338
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.44 E-value=0.11 Score=50.78 Aligned_cols=69 Identities=19% Similarity=0.214 Sum_probs=47.7
Q ss_pred EEEeCCCCCchhHHHHHHHHHHhc-CCcEEEEcccchhhHHhhhccCCcEEEEeCCcccchHHhhccccCCCcceEEEEe
Q 035724 233 ELIWGPPGTGKTKTVSMLLDFCFT-KASLIFCTASSSYKLHRVAMEQLKFLVIDEAAQLKEVESAIPLKLPGIQHAILIG 311 (1939)
Q Consensus 233 ~LI~GPPGTGKTtti~~li~~~l~-~a~vI~~T~sss~~l~~l~~~~fdvVIIDEASQ~~E~e~lipL~~~~~~rlVLiG 311 (1939)
.++.|.+|+||||++..++..+-+ +.++++.. |++|+|-.+.+.....+.+........++++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~---------------d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~ 66 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID---------------DYVLIDTPPGLGLLVLLCLLALLAADLVIIVT 66 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC---------------CEEEEeCCCCccchhhhhhhhhhhCCEEEEec
Confidence 478899999999999999877654 44555443 99999999988766531111112346777777
Q ss_pred ccccC
Q 035724 312 DECQL 316 (1939)
Q Consensus 312 D~~QL 316 (1939)
++.+.
T Consensus 67 ~~~~~ 71 (99)
T cd01983 67 TPEAL 71 (99)
T ss_pred CCchh
Confidence 66543
No 339
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.39 E-value=0.059 Score=59.12 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=20.2
Q ss_pred EEEeCCCCCchhHHHHHHHHHHhc
Q 035724 233 ELIWGPPGTGKTKTVSMLLDFCFT 256 (1939)
Q Consensus 233 ~LI~GPPGTGKTtti~~li~~~l~ 256 (1939)
..|+||||.||||++..++..+-.
T Consensus 8 i~ITG~PGvGKtTl~~ki~e~L~~ 31 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIAEKLRE 31 (179)
T ss_pred EEEeCCCCccHHHHHHHHHHHHHh
Confidence 389999999999999999855543
No 340
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.38 E-value=0.08 Score=63.37 Aligned_cols=46 Identities=28% Similarity=0.370 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcC-CcEEE
Q 035724 211 DSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTK-ASLIF 262 (1939)
Q Consensus 211 ~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~-a~vI~ 262 (1939)
+...+.+..++.. ....+|.||+|+||||++.+++..+-.. .+++.
T Consensus 114 ~~~~~~l~~~v~~------~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~ 160 (270)
T PF00437_consen 114 EEIAEFLRSAVRG------RGNILISGPTGSGKTTLLNALLEEIPPEDERIVT 160 (270)
T ss_dssp HHHHHHHHHCHHT------TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEE
T ss_pred HHHHHHHhhcccc------ceEEEEECCCccccchHHHHHhhhccccccceEE
Confidence 3444445544442 4678999999999999999999777666 55444
No 341
>PRK00254 ski2-like helicase; Provisional
Probab=94.36 E-value=0.085 Score=71.88 Aligned_cols=36 Identities=25% Similarity=0.222 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVS 248 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~ 248 (1939)
..|++.|.+|+...+.. ..=.++..|+|+|||.+..
T Consensus 22 ~~l~~~Q~~ai~~~~~~------g~nvlv~apTGsGKT~~~~ 57 (720)
T PRK00254 22 EELYPPQAEALKSGVLE------GKNLVLAIPTASGKTLVAE 57 (720)
T ss_pred CCCCHHHHHHHHHHHhC------CCcEEEECCCCcHHHHHHH
Confidence 46899999999874442 2235999999999999773
No 342
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=94.32 E-value=2 Score=49.98 Aligned_cols=67 Identities=18% Similarity=0.145 Sum_probs=45.5
Q ss_pred cCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHH
Q 035724 1062 ASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAA 1141 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAa 1141 (1939)
.-.++.+..+|..++..++|++|+..|+++-.... .++. ....+...+..|.+.|++++|+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p------------------~~~~-~~~a~~~la~~~~~~~~~~~A~ 90 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYP------------------FSPY-AEQAQLDLAYAYYKSGDYAEAI 90 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------------------Cchh-HHHHHHHHHHHHHhcCCHHHHH
Confidence 44567899999999999999999999987522000 0111 1223455577777778888887
Q ss_pred HHHHHh
Q 035724 1142 KCFYNL 1147 (1939)
Q Consensus 1142 ecy~ka 1147 (1939)
..|.++
T Consensus 91 ~~~~~~ 96 (235)
T TIGR03302 91 AAADRF 96 (235)
T ss_pred HHHHHH
Confidence 776654
No 343
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.31 E-value=0.083 Score=68.81 Aligned_cols=79 Identities=23% Similarity=0.311 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHhccc-----CCCCCcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcc---------cchhhHHh--
Q 035724 210 NDSQAQAVLSCLRRTH-----CDHKATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTA---------SSSYKLHR-- 273 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~~-----~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~---------sss~~l~~-- 273 (1939)
.+..+++|...+.... ....+...|++||||||||.++.++...+ +..++-.-. .+......
T Consensus 251 k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~--~~~fi~v~~~~l~sk~vGesek~ir~~F 328 (494)
T COG0464 251 KEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES--RSRFISVKGSELLSKWVGESEKNIRELF 328 (494)
T ss_pred HHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC--CCeEEEeeCHHHhccccchHHHHHHHHH
Confidence 3455667776666443 22334467999999999999999887532 222222111 11111111
Q ss_pred --hhccCCcEEEEeCCccc
Q 035724 274 --VAMEQLKFLVIDEAAQL 290 (1939)
Q Consensus 274 --l~~~~fdvVIIDEASQ~ 290 (1939)
.....+.+|+|||+-.+
T Consensus 329 ~~A~~~~p~iiFiDEiDs~ 347 (494)
T COG0464 329 EKARKLAPSIIFIDEIDSL 347 (494)
T ss_pred HHHHcCCCcEEEEEchhhh
Confidence 13456889999997654
No 344
>COG4889 Predicted helicase [General function prediction only]
Probab=94.28 E-value=0.12 Score=67.90 Aligned_cols=47 Identities=19% Similarity=0.100 Sum_probs=33.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHH
Q 035724 202 GPSLSSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLL 251 (1939)
Q Consensus 202 ~~~~~~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li 251 (1939)
|+....++-+.|+.|+..++.....+.+..+ |- .||||||.|...|.
T Consensus 155 ~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkL--IM-AcGTGKTfTsLkis 201 (1518)
T COG4889 155 PLKKPKKPRPHQQTAIDAAKEGFSDNDRGKL--IM-ACGTGKTFTSLKIS 201 (1518)
T ss_pred ccCCCCCCChhHHHHHHHHHhhcccccCCcE--EE-ecCCCccchHHHHH
Confidence 3334467889999999999986654444443 33 68999999986654
No 345
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=94.25 E-value=0.057 Score=69.94 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=21.0
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHHh
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFCF 255 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~l 255 (1939)
.-.|++||||||||+++.++...+.
T Consensus 217 ~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 217 KGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred cceEEECCCCCcHHHHHHHHHHhhc
Confidence 3469999999999999998886653
No 346
>PRK11189 lipoprotein NlpI; Provisional
Probab=94.20 E-value=2.1 Score=52.26 Aligned_cols=119 Identities=14% Similarity=0.042 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHH
Q 035724 1065 PEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCF 1144 (1939)
Q Consensus 1065 peeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy 1144 (1939)
+.-|..+|..+...|++++|+.+|.+|-.. +|. ....|...+..|...|+++.|+++|
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l---------------------~P~-~~~a~~~lg~~~~~~g~~~~A~~~~ 121 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALAL---------------------RPD-MADAYNYLGIYLTQAGNFDAAYEAF 121 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc---------------------CCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 445999999999999999999999876321 132 1235678889999999999998876
Q ss_pred HHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHcc-----CHHHHHH--HHHhcCChHHHHHHHH
Q 035724 1145 YNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGK-----FFSECLA--VCSKGKLFEIGLQYMN 1213 (1939)
Q Consensus 1145 ~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kag-----d~dkAI~--my~k~k~fd~airLv~ 1213 (1939)
.++ .++-- -....+...|..+...|++++|.+.|.++- +...++- ++...+++++|+...+
T Consensus 122 ~~A------l~l~P--~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~ 189 (296)
T PRK11189 122 DSV------LELDP--TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLK 189 (296)
T ss_pred HHH------HHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHH
Confidence 554 33300 011235667888999999999999998862 2222221 2334556777777664
No 347
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.20 E-value=0.048 Score=63.04 Aligned_cols=22 Identities=41% Similarity=0.649 Sum_probs=17.9
Q ss_pred CcEEEEeCCCCCchhHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLL 251 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li 251 (1939)
+.=.|..||||||||.++.+.+
T Consensus 205 PKGvLmYGPPGTGKTlmARAcA 226 (424)
T KOG0652|consen 205 PKGVLMYGPPGTGKTLMARACA 226 (424)
T ss_pred CCceEeeCCCCCcHHHHHHHHH
Confidence 3346999999999999887665
No 348
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.20 E-value=0.052 Score=68.86 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=20.4
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHH
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
+-.|+.||||||||+++..+.+.+
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Confidence 446999999999999999887554
No 349
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.19 E-value=3.4 Score=52.95 Aligned_cols=235 Identities=17% Similarity=0.110 Sum_probs=125.6
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHHHHhC
Q 035724 1069 KSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCFYNLG 1148 (1939)
Q Consensus 1069 ~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy~kag 1148 (1939)
..+|..+.+.++|+.|++||..+=+.. ...+.+...|-.|.+.|++.+.+..-.+
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~-----------------------~~it~~~n~aA~~~e~~~~~~c~~~c~~-- 282 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA-----------------------TDITYLNNIAAVYLERGKYAECIELCEK-- 282 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh-----------------------hhhHHHHHHHHHHHhccHHHHhhcchHH--
Confidence 677999999999999999999763311 1233455555566666655544322222
Q ss_pred CHHHHHHHHHHh-----cChHHHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHHHHHhcCChHHHHHHHHhhhhcccccc
Q 035724 1149 EYERAGRIYLER-----REEPELEKAGECFFLAGCYKLAADVYAKGKFFSECLAVCSKGKLFEIGLQYMNHWKQHADTDV 1223 (1939)
Q Consensus 1149 ~~~~A~eLY~e~-----~~e~~~~qaAe~fE~~G~y~eAAelY~kagd~dkAI~my~k~k~fd~airLv~q~~d~l~~~~ 1223 (1939)
|++-=.+. +=...+.+.|..+-+.+.|+.|.+.|.++-...+.-++..+.+..+++++..+...-
T Consensus 283 ----a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~------ 352 (539)
T KOG0548|consen 283 ----AVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAY------ 352 (539)
T ss_pred ----HHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHh------
Confidence 22211110 000113335667777788888888888865444444455555555555444432111
Q ss_pred cccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHH---hccHHHHHHHHHhhcCHHHHHHHHHhcCCHH
Q 035724 1224 EHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKS---FRSVDLMRKFLKSLSCFDDLLVLEEESGNFM 1300 (1939)
Q Consensus 1224 ~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~---~~s~eeA~~~L~k~~~ldea~ell~e~G~fe 1300 (1939)
.....+.+.. .++..+++.||+..|++.|-. .+ .+++.- +...+-.+...|.+.
T Consensus 353 --------------~~pe~A~e~r-~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~l-------YsNRAac~~kL~~~~ 409 (539)
T KOG0548|consen 353 --------------INPEKAEEER-EKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARL-------YSNRAACYLKLGEYP 409 (539)
T ss_pred --------------hChhHHHHHH-HHHHHHHhccCHHHHHHHHHHHHhcC-CchhHH-------HHHHHHHHHHHhhHH
Confidence 0111122222 338889999999999987753 22 222222 233345566777888
Q ss_pred HHHHHHHHcCCHH-HHHHHHHHhCCHHHHHHHHHHHhhhhccccCCCCCCCCcchhhHHHHHHHHHhHhhhhhHHHHHHH
Q 035724 1301 DAANIARLRGDIF-LAVDLLQKAGCFKEACNVTLNHVISNSLWSPGSKGWPLKQFTKKKELLEKAKSLAKNESNQFYEFV 1379 (1939)
Q Consensus 1301 EAa~Lak~~Gk~~-eAi~my~kAG~~~eA~rva~~~~~~~~l~~~~~~~~~~~~~~~ae~ll~~A~~~~~~~s~~~~~~~ 1379 (1939)
+|..=++...... ..++.|.+-|.-..+ .++|.+|.+.+.+|....-. +.-+++-+
T Consensus 410 ~aL~Da~~~ieL~p~~~kgy~RKg~al~~----------------------mk~ydkAleay~eale~dp~-~~e~~~~~ 466 (539)
T KOG0548|consen 410 EALKDAKKCIELDPNFIKAYLRKGAALRA----------------------MKEYDKALEAYQEALELDPS-NAEAIDGY 466 (539)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHhcCch-hHHHHHHH
Confidence 8876555543322 234445443221111 14466677777777664322 22344444
Q ss_pred --hhhhh
Q 035724 1380 --CTEAD 1384 (1939)
Q Consensus 1380 --~~e~~ 1384 (1939)
|+|+-
T Consensus 467 ~rc~~a~ 473 (539)
T KOG0548|consen 467 RRCVEAQ 473 (539)
T ss_pred HHHHHHh
Confidence 66664
No 350
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=94.19 E-value=0.13 Score=69.27 Aligned_cols=43 Identities=26% Similarity=0.278 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHhcccCC---CCCcEEEEeCCCCCchhHHHHHHH
Q 035724 209 LNDSQAQAVLSCLRRTHCD---HKATVELIWGPPGTGKTKTVSMLL 251 (1939)
Q Consensus 209 LN~sQ~~AV~~~L~~~~~~---~~~~v~LI~GPPGTGKTtti~~li 251 (1939)
.-..|..||..++...... ...+-.+||-|.|||||.|+..++
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la 284 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAA 284 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHH
Confidence 4568999999988764221 113457999999999999998776
No 351
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.18 E-value=2.3 Score=51.68 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=16.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhc
Q 035724 1251 AIHYYGLQDKKSMMKFVKSFR 1271 (1939)
Q Consensus 1251 a~hy~kagD~k~A~~~~~~~~ 1271 (1939)
+.+|++.||.++|...++.++
T Consensus 292 ~iYyL~q~dVqeA~~L~Kdl~ 312 (557)
T KOG3785|consen 292 IIYYLNQNDVQEAISLCKDLD 312 (557)
T ss_pred eeeecccccHHHHHHHHhhcC
Confidence 667889999988888776444
No 352
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.15 E-value=0.047 Score=69.70 Aligned_cols=60 Identities=22% Similarity=0.302 Sum_probs=34.7
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHHh------cCCcEEEEc-ccchhhHHhh----hccCCcEEEEeCCccc
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFCF------TKASLIFCT-ASSSYKLHRV----AMEQLKFLVIDEAAQL 290 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~l------~~a~vI~~T-~sss~~l~~l----~~~~fdvVIIDEASQ~ 290 (1939)
+=.|+|||||+|||.++.++...+- ....||.+- +-+-..+..+ ....+-+|+|||.--+
T Consensus 224 rGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI 294 (802)
T KOG0733|consen 224 RGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAI 294 (802)
T ss_pred CceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccCCeEEEeeccccc
Confidence 3369999999999999998885432 112222211 1111222222 3345678888886644
No 353
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=94.13 E-value=0.089 Score=75.21 Aligned_cols=85 Identities=16% Similarity=0.160 Sum_probs=59.3
Q ss_pred cCCcEEEEeCCcccchHH--hhccccC---C-------CcceEEEEeccccCCcceeccccccccccCCHHHHHHhc---
Q 035724 277 EQLKFLVIDEAAQLKEVE--SAIPLKL---P-------GIQHAILIGDECQLPAMVESSVSGEACLGRSLFERLSNL--- 341 (1939)
Q Consensus 277 ~~fdvVIIDEASQ~~E~e--~lipL~~---~-------~~~rlVLiGD~~QLpPvV~s~~~~~~gl~~SLFeRL~~~--- 341 (1939)
..|++|+|||.--.+..+ .+-++.. + ....+++|||++|= +-.--|-+..+|.++.+.
T Consensus 390 ~r~~~iLVDEFQDTs~~Q~~il~~L~~~~~~g~~~~~~~~~~lf~VGD~kQS-------IY~FRGAd~~~f~~~~~~~~~ 462 (1141)
T TIGR02784 390 RGIDHILVDEAQDTSPEQWDIIQALAEEFFSGEGARSGVERTIFAVGDEKQS-------IYSFQGADPDRFAEERREFNR 462 (1141)
T ss_pred cCCCEEEEECCcCCCHHHHHHHHHHHHhhcccccccCCCCCeEEEEeCCccc-------CccccCCCHHHHHHHHHHHHH
Confidence 579999999999988763 3334421 0 13679999999992 112223355666665432
Q ss_pred -------CCccccccccccCChhhhccCcccccC
Q 035724 342 -------GQAKHLLSIQYRMHPSISSFPNSYFYD 368 (1939)
Q Consensus 342 -------~~~~~~L~~QYRmhp~I~~f~S~~FY~ 368 (1939)
....+.|+++||++|.|.++.|..|-+
T Consensus 463 ~~~~~~~~~~~~~L~~NyRS~~~Il~~~N~lf~~ 496 (1141)
T TIGR02784 463 KVRAVGAKFEDLSLNYSFRSTPDVLAAVDLVFAD 496 (1141)
T ss_pred hhhhccCCceEeeCCcCCCChHHHHHHHHHHHhC
Confidence 123578999999999999999998865
No 354
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=94.13 E-value=0.094 Score=71.81 Aligned_cols=34 Identities=26% Similarity=0.437 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHH
Q 035724 212 SQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLL 251 (1939)
Q Consensus 212 sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li 251 (1939)
..+..|..++.. ++..+|+|||||||||.+-..+
T Consensus 5 ~~~~~i~~~l~~------~~~vIi~a~TGSGKTT~vpl~l 38 (819)
T TIGR01970 5 AVLPALRDALAA------HPQVVLEAPPGAGKSTAVPLAL 38 (819)
T ss_pred HHHHHHHHHHHc------CCcEEEECCCCCCHHHHHHHHH
Confidence 345666777763 5688999999999999876443
No 355
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=94.12 E-value=8 Score=47.17 Aligned_cols=27 Identities=15% Similarity=0.001 Sum_probs=13.7
Q ss_pred CCHHHHHHHHHHHHHhhCHHHHHHHHH
Q 035724 1063 SSPEEWKSRGIKLFHEHNYDMATICFE 1089 (1939)
Q Consensus 1063 StpeeW~~lG~~l~~q~~yd~A~kcF~ 1089 (1939)
+|-+.=..+|.-+=+.|..|.|++.-+
T Consensus 67 ~t~e~~ltLGnLfRsRGEvDRAIRiHQ 93 (389)
T COG2956 67 ETFEAHLTLGNLFRSRGEVDRAIRIHQ 93 (389)
T ss_pred hhhHHHHHHHHHHHhcchHHHHHHHHH
Confidence 333444555554444466666665444
No 356
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.10 E-value=0.08 Score=73.13 Aligned_cols=27 Identities=37% Similarity=0.605 Sum_probs=23.1
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHHhcC
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFCFTK 257 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~l~~ 257 (1939)
...++.||||||||+++..+.+.++..
T Consensus 599 ~~~Lf~Gp~G~GKT~lA~aLa~~l~~~ 625 (857)
T PRK10865 599 GSFLFLGPTGVGKTELCKALANFMFDS 625 (857)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhhcC
Confidence 467999999999999999998777644
No 357
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=94.10 E-value=0.087 Score=74.13 Aligned_cols=34 Identities=26% Similarity=0.496 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHH
Q 035724 212 SQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLL 251 (1939)
Q Consensus 212 sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li 251 (1939)
..++.|..++.. +.+.+|.|++||||||.+-.++
T Consensus 77 ~~r~~Il~ai~~------~~VviI~GeTGSGKTTqlPq~l 110 (1294)
T PRK11131 77 QKKQDILEAIRD------HQVVIVAGETGSGKTTQLPKIC 110 (1294)
T ss_pred HHHHHHHHHHHh------CCeEEEECCCCCCHHHHHHHHH
Confidence 345667777763 6799999999999999876554
No 358
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.08 E-value=0.088 Score=71.76 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=20.9
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHH
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
...++.||||||||+++..+.+.+
T Consensus 485 ~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 485 GSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred eeEEEECCCCccHHHHHHHHHHHh
Confidence 357999999999999999998766
No 359
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=94.07 E-value=0.088 Score=74.63 Aligned_cols=38 Identities=26% Similarity=0.145 Sum_probs=30.2
Q ss_pred CCCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHH
Q 035724 206 SSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSML 250 (1939)
Q Consensus 206 ~~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~l 250 (1939)
...+.+-|+.++..++.. .-.++.+|+|||||+++..+
T Consensus 76 g~~p~~iQ~~~i~~il~G-------~d~vi~ApTGsGKT~f~l~~ 113 (1171)
T TIGR01054 76 GSEPWSIQKMWAKRVLRG-------DSFAIIAPTGVGKTTFGLAM 113 (1171)
T ss_pred CCCCcHHHHHHHHHHhCC-------CeEEEECCCCCCHHHHHHHH
Confidence 456789999999999973 34589999999999865433
No 360
>PRK14574 hmsH outer membrane protein; Provisional
Probab=94.04 E-value=1.4 Score=60.73 Aligned_cols=129 Identities=12% Similarity=-0.118 Sum_probs=61.7
Q ss_pred HhcCCHHHHHHHHHHc---CC--H----HHHHHHHHHhCCHHHHHHHHHHHhhhhc---------cccC--CCCCCCCcc
Q 035724 1294 EESGNFMDAANIARLR---GD--I----FLAVDLLQKAGCFKEACNVTLNHVISNS---------LWSP--GSKGWPLKQ 1353 (1939)
Q Consensus 1294 ~e~G~feEAa~Lak~~---Gk--~----~eAi~my~kAG~~~eA~rva~~~~~~~~---------l~~~--~~~~~~~~~ 1353 (1939)
...|++.++.+.++.- |. | .-++++|...++.++|.-++.+-.-.+. .+.. .-.-.+..+
T Consensus 303 ~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~ 382 (822)
T PRK14574 303 LVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQ 382 (822)
T ss_pred HHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhccc
Confidence 3455666665544432 21 1 2347778888888888777664321110 0000 011234456
Q ss_pred hhhHHHHHHHHHhHhhhhhHHHHHHHhhhhhccccCCCCHHHHHHHHhhhcccCccccchhhhHHHhhhccccccccce
Q 035724 1354 FTKKKELLEKAKSLAKNESNQFYEFVCTEADILSNDQSDLSIINQQLNASTRHQSISGETLSVRQILDFHLKTDSSKYV 1432 (1939)
Q Consensus 1354 ~~~ae~ll~~A~~~~~~~s~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1432 (1939)
|.+|..++.+.++ +.+ . +-...+...-..|++=. +. +.|... +-.-+|++-.+.++||.=+...+....
T Consensus 383 ~~~A~~~l~~~~~---~~p-~-~~~~~~~~~~~pn~d~~--~~-~~l~a~--~~~~~gdl~~Ae~~le~l~~~aP~n~~ 451 (822)
T PRK14574 383 LDKAYQFAVNYSE---QTP-Y-QVGVYGLPGKEPNDDWI--EG-QTLLVQ--SLVALNDLPTAQKKLEDLSSTAPANQN 451 (822)
T ss_pred HHHHHHHHHHHHh---cCC-c-EEeccCCCCCCCCccHH--HH-HHHHHH--HHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 7777777776654 222 1 11112333334443221 22 112221 334566677777888877666555433
No 361
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=94.03 E-value=0.14 Score=61.86 Aligned_cols=107 Identities=14% Similarity=0.160 Sum_probs=68.0
Q ss_pred HHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhc--------------CCcEEEEccc------chhhHHh
Q 035724 214 AQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFT--------------KASLIFCTAS------SSYKLHR 273 (1939)
Q Consensus 214 ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~--------------~a~vI~~T~s------ss~~l~~ 273 (1939)
.+.+..++.. +..++-.|+.||+|+||++++..+++.++- ++++....+. +.-+...
T Consensus 6 ~~~L~~~i~~---~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~ 82 (290)
T PRK05917 6 WEALIQRVRD---QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRA 82 (290)
T ss_pred HHHHHHHHHc---CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHH
Confidence 3445555553 344677899999999999999988865542 3455433221 1111111
Q ss_pred h--------hccCCcEEEEeCCcccchH--HhhccccC--CCcceEEEEecc-ccCCcceecc
Q 035724 274 V--------AMEQLKFLVIDEAAQLKEV--ESAIPLKL--PGIQHAILIGDE-CQLPAMVESS 323 (1939)
Q Consensus 274 l--------~~~~fdvVIIDEASQ~~E~--e~lipL~~--~~~~rlVLiGD~-~QLpPvV~s~ 323 (1939)
+ ...++.++|||+|..+++. .+++-... ++...+||+.+. .+|+|++.|.
T Consensus 83 l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SR 145 (290)
T PRK05917 83 IKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSR 145 (290)
T ss_pred HHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhc
Confidence 1 1256799999999999875 33333322 345677888876 7889998664
No 362
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=93.99 E-value=0.044 Score=57.00 Aligned_cols=23 Identities=39% Similarity=0.626 Sum_probs=20.1
Q ss_pred EEEEeCCCCCchhHHHHHHHHHH
Q 035724 232 VELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 232 v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
+.+|.||||+||||++..|.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 35899999999999999998655
No 363
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.98 E-value=0.14 Score=66.46 Aligned_cols=33 Identities=21% Similarity=0.273 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKT 246 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtt 246 (1939)
..+.+.|.+||..++.. .. .++..|.|+|||.+
T Consensus 10 ~~~r~~Q~~ai~~~l~g------~d-vlv~apTGsGKTl~ 42 (470)
T TIGR00614 10 SSFRPVQLEVINAVLLG------RD-CFVVMPTGGGKSLC 42 (470)
T ss_pred CCCCHHHHHHHHHHHcC------CC-EEEEcCCCCcHhHH
Confidence 46789999999999983 23 58999999999974
No 364
>TIGR00609 recB exodeoxyribonuclease V, beta subunit. All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologs) that function to generate substrates for the initiation of recombination and recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.88 E-value=0.13 Score=73.01 Aligned_cols=86 Identities=21% Similarity=0.155 Sum_probs=58.3
Q ss_pred ccCCcEEEEeCCcccchHHhhcc--ccCCCc-ceEEEEeccccCCcceeccccccccccCCHHHHHHhcCCccccccccc
Q 035724 276 MEQLKFLVIDEAAQLKEVESAIP--LKLPGI-QHAILIGDECQLPAMVESSVSGEACLGRSLFERLSNLGQAKHLLSIQY 352 (1939)
Q Consensus 276 ~~~fdvVIIDEASQ~~E~e~lip--L~~~~~-~rlVLiGD~~QLpPvV~s~~~~~~gl~~SLFeRL~~~~~~~~~L~~QY 352 (1939)
...|++++|||.--.+..+.-+. +...+. ..+++|||++|=- -.-.|-+...|.+....-...+.|+++|
T Consensus 294 r~ry~~vLVDEFQDTd~~Q~~il~~L~~~~~~~~L~~VGDpKQSI-------Y~FRGAD~~~~~~~~~~~~~~~~L~~Ny 366 (1087)
T TIGR00609 294 REQYPIALIDEFQDTDPQQYRIFSKLFIAQKTTSLFLIGDPKQAI-------YSFRGADIFTYLQAKSKADARYTLGTNW 366 (1087)
T ss_pred HhCCCEEEEECCcCCCHHHHHHHHHHHhCCCCCeEEEEECCcccc-------ccCCCCCHHHHHHHHHhcCcEEECCCCC
Confidence 35899999999999987743332 322111 3799999999921 1111223344555443323567999999
Q ss_pred cCChhhhccCcccccC
Q 035724 353 RMHPSISSFPNSYFYD 368 (1939)
Q Consensus 353 Rmhp~I~~f~S~~FY~ 368 (1939)
|++|.|.++.|..|-.
T Consensus 367 RS~~~Iv~~~N~lf~~ 382 (1087)
T TIGR00609 367 RSTPALVGSLNKLFSL 382 (1087)
T ss_pred CCcHHHHHHHHHHHhc
Confidence 9999999999988753
No 365
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=93.87 E-value=0.038 Score=63.22 Aligned_cols=30 Identities=40% Similarity=0.558 Sum_probs=22.7
Q ss_pred ccCHHHHhhhcc----CCc-EEEecCCCChHHHHH
Q 035724 718 EVTDEQLEMILF----PKS-SFILGRSGTGKTTIL 747 (1939)
Q Consensus 718 ~l~~ee~~iI~~----p~~-~~vlGrSGTGKTT~~ 747 (1939)
.||++|.+.+.. +.. ++|.|++||||||++
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l 35 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL 35 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH
Confidence 489999999985 333 667799999999964
No 366
>CHL00195 ycf46 Ycf46; Provisional
Probab=93.86 E-value=0.079 Score=68.58 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=20.7
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
+.-.|++||||||||.++.++...+
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~ 283 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDW 283 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 3446999999999999999888654
No 367
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.84 E-value=0.063 Score=67.55 Aligned_cols=54 Identities=28% Similarity=0.413 Sum_probs=33.9
Q ss_pred EEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcc-----------cchhhHHhh----hccCCcEEEEeCCccc
Q 035724 233 ELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTA-----------SSSYKLHRV----AMEQLKFLVIDEAAQL 290 (1939)
Q Consensus 233 ~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~-----------sss~~l~~l----~~~~fdvVIIDEASQ~ 290 (1939)
.|+.||||||||.++.+++ .+|.|-+--+ .++.+...+ +...+-+|+|||.--+
T Consensus 340 VLLvGPPGTGKTlLARAvA----GEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDav 408 (752)
T KOG0734|consen 340 VLLVGPPGTGKTLLARAVA----GEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAV 408 (752)
T ss_pred eEEeCCCCCchhHHHHHhh----cccCCCeEeccccchhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 4999999999999988776 3344333211 222333222 3456789999996533
No 368
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.83 E-value=0.14 Score=64.02 Aligned_cols=36 Identities=28% Similarity=0.343 Sum_probs=26.5
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHhc-CCcEEEEcc
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCFT-KASLIFCTA 265 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l~-~a~vI~~T~ 265 (1939)
+.+.+|.||+|+|||||++.|...+.. +.+|.+.++
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~a 277 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITT 277 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEec
Confidence 467899999999999999999855443 335555444
No 369
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=0.061 Score=62.02 Aligned_cols=62 Identities=21% Similarity=0.323 Sum_probs=35.0
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHhcC-CcEEEEcc---------cchhhHHhh-hccCCcEEEEeCCccc
Q 035724 229 KATVELIWGPPGTGKTKTVSMLLDFCFTK-ASLIFCTA---------SSSYKLHRV-AMEQLKFLVIDEAAQL 290 (1939)
Q Consensus 229 ~~~v~LI~GPPGTGKTtti~~li~~~l~~-a~vI~~T~---------sss~~l~~l-~~~~fdvVIIDEASQ~ 290 (1939)
+++=.|+.||||||||.++.+.+...-.. .+|+.+-. -......++ +...+.+++|||.--+
T Consensus 188 pprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakenapsiifideidai 260 (408)
T KOG0727|consen 188 PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAI 260 (408)
T ss_pred CCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhH
Confidence 34446999999999999998776322111 12322110 001111122 3456789999997643
No 370
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.81 E-value=0.11 Score=58.94 Aligned_cols=43 Identities=30% Similarity=0.328 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHh
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCF 255 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l 255 (1939)
..+++.|.+.+..++.. ....+|.||+|+||||++..++..+.
T Consensus 8 g~~~~~~~~~l~~~v~~------g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 8 GTFSPLQAAYLWLAVEA------RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCCCHHHHHHHHHHHhC------CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 35788999999999884 56789999999999999998875543
No 371
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.80 E-value=0.6 Score=58.74 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCc
Q 035724 1063 SSPEEWKSRGIKLFHEHNYDMATICFEKAKDS 1094 (1939)
Q Consensus 1063 StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~ 1094 (1939)
.+|.-...+|+..|-.++|++|+.=|++|-..
T Consensus 392 ~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L 423 (606)
T KOG0547|consen 392 ENPDVYYHRGQMRFLLQQYEEAIADFQKAISL 423 (606)
T ss_pred CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35667889999999999999999999988653
No 372
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=93.78 E-value=0.036 Score=62.31 Aligned_cols=30 Identities=13% Similarity=0.277 Sum_probs=19.1
Q ss_pred EEeCCCCCchhHHHHHHHHHHhcC--CcEEEE
Q 035724 234 LIWGPPGTGKTKTVSMLLDFCFTK--ASLIFC 263 (1939)
Q Consensus 234 LI~GPPGTGKTtti~~li~~~l~~--a~vI~~ 263 (1939)
+|.++.|.|||+++..++..+... .+|+++
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vt 32 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVT 32 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEe
Confidence 588999999999998777444433 245554
No 373
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.77 E-value=2.3 Score=56.79 Aligned_cols=87 Identities=9% Similarity=0.057 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 035724 1068 WKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCFYNL 1147 (1939)
Q Consensus 1068 W~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy~ka 1147 (1939)
....=..++++..|+.|++..+.-+. ++..-+...+++|.+.-+-|.++.|..-|+++
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~----------------------d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~t 394 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHL----------------------DEDTLAEIHRKYGDYLYGKGDFDEATDQYIET 394 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCC----------------------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 33445678899999999988776543 12223445678888888889999999999887
Q ss_pred CCHHHHHHHHHHhcChHHHHHHHHHHHHc
Q 035724 1148 GEYERAGRIYLERREEPELEKAGECFFLA 1176 (1939)
Q Consensus 1148 g~~~~A~eLY~e~~~e~~~~qaAe~fE~~ 1176 (1939)
=.+-+-.++..+-.+.+.+++-+.++|..
T Consensus 395 I~~le~s~Vi~kfLdaq~IknLt~YLe~L 423 (933)
T KOG2114|consen 395 IGFLEPSEVIKKFLDAQRIKNLTSYLEAL 423 (933)
T ss_pred cccCChHHHHHHhcCHHHHHHHHHHHHHH
Confidence 76655566655556677777777777665
No 374
>PRK06851 hypothetical protein; Provisional
Probab=93.76 E-value=0.078 Score=66.05 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=26.8
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHhc-CCcEEE
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCFT-KASLIF 262 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l~-~a~vI~ 262 (1939)
.++.+|.|||||||||++..+++.+.. ...|-+
T Consensus 30 ~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~ 63 (367)
T PRK06851 30 NRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEF 63 (367)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 578999999999999999999977754 344443
No 375
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.72 E-value=1 Score=57.64 Aligned_cols=148 Identities=16% Similarity=0.142 Sum_probs=95.7
Q ss_pred cCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCC--cchH-HHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHH
Q 035724 1062 ASSPEEWKSRGIKLFHEHNYDMATICFEKAKD--SYWE-GRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKAD 1138 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd--~~~~-~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~ 1138 (1939)
.+.|--|...|.+++.-+++.+|.++|-||-- ..+. .|. +++..-..+ .+.+.+...|..|++++-.+-.+-
T Consensus 309 P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl-~fghsfa~e----~EhdQAmaaY~tAarl~~G~hlP~ 383 (611)
T KOG1173|consen 309 PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWL-AFGHSFAGE----GEHDQAMAAYFTAARLMPGCHLPS 383 (611)
T ss_pred CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHH-HHhHHhhhc----chHHHHHHHHHHHHHhccCCcchH
Confidence 56677899999999999999999999999853 2222 222 122211111 123446778999999988776665
Q ss_pred HHHHH-HHHhCCHHHHHHHHHHhc---C--hHHHHHHHHHHHHcCCHHHHHHHHHHccCHHH---------------HHH
Q 035724 1139 SAAKC-FYNLGEYERAGRIYLERR---E--EPELEKAGECFFLAGCYKLAADVYAKGKFFSE---------------CLA 1197 (1939)
Q Consensus 1139 kAaec-y~kag~~~~A~eLY~e~~---~--e~~~~qaAe~fE~~G~y~eAAelY~kagd~dk---------------AI~ 1197 (1939)
.=+-+ |...++++.|.+.+.++. . .-.+.+.|-.....+.|.+|..++.++-..-+ .--
T Consensus 384 LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH 463 (611)
T KOG1173|consen 384 LYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGH 463 (611)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHH
Confidence 43333 344778888888877752 1 12366778888888889999988877752211 122
Q ss_pred HHHhcCChHHHHHHHHh
Q 035724 1198 VCSKGKLFEIGLQYMNH 1214 (1939)
Q Consensus 1198 my~k~k~fd~airLv~q 1214 (1939)
.|.+.+.+++|+...++
T Consensus 464 ~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 464 AYRKLNKYEEAIDYYQK 480 (611)
T ss_pred HHHHHhhHHHHHHHHHH
Confidence 45556666666655554
No 376
>PRK12370 invasion protein regulator; Provisional
Probab=93.70 E-value=7.6 Score=51.68 Aligned_cols=107 Identities=10% Similarity=0.017 Sum_probs=61.9
Q ss_pred HHHHhCCHHHHHHHHHHhc--C---hHHHHHHHHHHHHcCCHHHHHHHHHHccC---------HHHHHHHHHhcCChHHH
Q 035724 1143 CFYNLGEYERAGRIYLERR--E---EPELEKAGECFFLAGCYKLAADVYAKGKF---------FSECLAVCSKGKLFEIG 1208 (1939)
Q Consensus 1143 cy~kag~~~~A~eLY~e~~--~---e~~~~qaAe~fE~~G~y~eAAelY~kagd---------~dkAI~my~k~k~fd~a 1208 (1939)
++...|++++|.+.|.++. . ...+...|..+...|++++|.+.|.++-. +..+. ++...+.+++|
T Consensus 347 ~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~-~~~~~g~~eeA 425 (553)
T PRK12370 347 INTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLW-ITYYHTGIDDA 425 (553)
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHH-HHHhccCHHHH
Confidence 4444555555555555431 1 12356668889999999999999988711 12222 34446678888
Q ss_pred HHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 035724 1209 LQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSF 1270 (1939)
Q Consensus 1209 irLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~ 1270 (1939)
+...++..+..... ........+..|...|+.++|.+.+...
T Consensus 426 ~~~~~~~l~~~~p~--------------------~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 426 IRLGDELRSQHLQD--------------------NPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHHHHHHHhcccc--------------------CHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 88877533211000 0011112256677888888888776543
No 377
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.66 E-value=0.081 Score=62.52 Aligned_cols=19 Identities=42% Similarity=0.826 Sum_probs=17.1
Q ss_pred EEEeCCCCCchhHHHHHHH
Q 035724 233 ELIWGPPGTGKTKTVSMLL 251 (1939)
Q Consensus 233 ~LI~GPPGTGKTtti~~li 251 (1939)
.|+.|||||||+.++.+.+
T Consensus 169 iLLyGPPGTGKSYLAKAVA 187 (439)
T KOG0739|consen 169 ILLYGPPGTGKSYLAKAVA 187 (439)
T ss_pred EEEeCCCCCcHHHHHHHHH
Confidence 5999999999999998776
No 378
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=93.65 E-value=0.21 Score=54.98 Aligned_cols=69 Identities=16% Similarity=0.108 Sum_probs=51.3
Q ss_pred cccccCHHHHhhhcc---C-CcEEEecCCCChHHHHHHHHHHHHhHhhhhhhcccccCCCccccccccccCccCCCCccc
Q 035724 715 LPFEVTDEQLEMILF---P-KSSFILGRSGTGKTTILTMKLFQKEKLHHMAMDGFYGVNNSVTLHSSWESGAEEGLGETE 790 (1939)
Q Consensus 715 ~pf~l~~ee~~iI~~---p-~~~~vlGrSGTGKTT~~L~kl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 790 (1939)
.+..++|.|.+++.. . .+++|.|..|||||++++.-++.. +..+.
T Consensus 5 ~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~------~~~~~------------------------- 53 (201)
T smart00487 5 GFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEA------LKRGK------------------------- 53 (201)
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHH------hcccC-------------------------
Confidence 456789999999875 3 689999999999999888777776 11000
Q ss_pred ccceeEEEEecCHHHHHHHHHHHHHH
Q 035724 791 RPILRQLFVTVSPKLCFAVKQHISQM 816 (1939)
Q Consensus 791 ~~~l~qvfVT~S~~L~~~vk~~~~~l 816 (1939)
.-..++++-+..++.+....+.++
T Consensus 54 --~~~~l~~~p~~~~~~~~~~~~~~~ 77 (201)
T smart00487 54 --GKRVLVLVPTRELAEQWAEELKKL 77 (201)
T ss_pred --CCcEEEEeCCHHHHHHHHHHHHHH
Confidence 124888998888888876666553
No 379
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.64 E-value=0.12 Score=64.20 Aligned_cols=27 Identities=30% Similarity=0.619 Sum_probs=23.5
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHhc
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCFT 256 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l~ 256 (1939)
..+.+|.||+|+|||||+..++..+..
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~ 148 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINK 148 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCc
Confidence 578999999999999999999876653
No 380
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.59 E-value=2.4 Score=56.03 Aligned_cols=67 Identities=21% Similarity=0.231 Sum_probs=51.8
Q ss_pred HhccHHHHHHHHHhhc---CHHHHHHHHHhcCCHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHH
Q 035724 1269 SFRSVDLMRKFLKSLS---CFDDLLVLEEESGNFMDAANIARLRGDIFLAVDLLQKAGCFKEACNVTLNH 1335 (1939)
Q Consensus 1269 ~~~s~eeA~~~L~k~~---~ldea~ell~e~G~feEAa~Lak~~Gk~~eAi~my~kAG~~~eA~rva~~~ 1335 (1939)
..+.|++-..|.+++. -+...++...+.|+-+||.+..-..+...|=+++|.+.|++.+|..+|.++
T Consensus 727 ~~~kweeLekfAkskksPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 727 DIKKWEELEKFAKSKKSPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred hhhhHHHHHHHHhccCCCCCchhHHHHHHhcccHHHHhhhhhccCChHHHHHHHHHhccHHHHHHHHHHh
Confidence 4556666666665555 345666777889999999887766666568899999999999999999988
No 381
>PRK06851 hypothetical protein; Provisional
Probab=93.57 E-value=0.11 Score=64.73 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=40.4
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHH-hcCCcEEEEcccchhhHHhhhccCCcEEEEeCCc
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFC-FTKASLIFCTASSSYKLHRVAMEQLKFLVIDEAA 288 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~-l~~a~vI~~T~sss~~l~~l~~~~fdvVIIDEAS 288 (1939)
.++.+|.|||||||||++..++..+ -++-+|.++.|+. .+...|.|||=|-+
T Consensus 214 ~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~-------dPdslD~viIPel~ 266 (367)
T PRK06851 214 KNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGF-------DPDSLDMVIIPELN 266 (367)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC-------CCCCcceEEeccCC
Confidence 5789999999999999999999666 4566777766653 34567888876655
No 382
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.56 E-value=0.21 Score=62.44 Aligned_cols=38 Identities=29% Similarity=0.390 Sum_probs=28.0
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHh---cCCcEEEEcccc
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCF---TKASLIFCTASS 267 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l---~~a~vI~~T~ss 267 (1939)
+++..+.||.|.|||||++.|+.... .+.+|-+.|+.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDt 243 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDT 243 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEecc
Confidence 68899999999999999999984433 344555555443
No 383
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=93.56 E-value=0.12 Score=68.70 Aligned_cols=34 Identities=24% Similarity=0.135 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTV 247 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti 247 (1939)
..+++-|.++|-.++.. .. .++++|.|||||.+.
T Consensus 30 ~~ptpiQ~~~ip~~l~G------~D-vi~~ApTGSGKTlaf 63 (572)
T PRK04537 30 TRCTPIQALTLPVALPG------GD-VAGQAQTGTGKTLAF 63 (572)
T ss_pred CCCCHHHHHHHHHHhCC------CC-EEEEcCCCCcHHHHH
Confidence 46799999999999974 23 599999999999764
No 384
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=93.55 E-value=0.13 Score=68.57 Aligned_cols=25 Identities=32% Similarity=0.687 Sum_probs=20.7
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
+...+|.|||||||||++..+....
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhh
Confidence 4567999999999999998887544
No 385
>PRK13764 ATPase; Provisional
Probab=93.53 E-value=0.12 Score=68.03 Aligned_cols=31 Identities=29% Similarity=0.470 Sum_probs=25.3
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHHhcCCcEE
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFCFTKASLI 261 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~l~~a~vI 261 (1939)
...+|.||||+||||++.+++..+....++|
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV 288 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADMGKIV 288 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCEE
Confidence 3469999999999999999997776555554
No 386
>PHA02624 large T antigen; Provisional
Probab=93.52 E-value=0.14 Score=66.65 Aligned_cols=76 Identities=18% Similarity=0.189 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccchhhHHhhh-ccCCcEEEEeCCcc
Q 035724 211 DSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASSSYKLHRVA-MEQLKFLVIDEAAQ 289 (1939)
Q Consensus 211 ~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~sss~~l~~l~-~~~fdvVIIDEASQ 289 (1939)
..=..+++..+... ...+..+++||||||||+++.+|++.+-.. ++-.+..++....-+. ...-.++++|.|.-
T Consensus 415 ~~~~~~lk~~l~gi---PKk~~il~~GPpnTGKTtf~~sLl~~L~G~--vlsVNsPt~ks~FwL~pl~D~~~~l~dD~t~ 489 (647)
T PHA02624 415 DVIYDILKLIVENV---PKRRYWLFKGPVNSGKTTLAAALLDLCGGK--SLNVNCPPDKLNFELGCAIDQFMVVFEDVKG 489 (647)
T ss_pred HHHHHHHHHHHhcC---CCCeEEEEECCCCCCHHHHHHHHHHHcCCe--EEEeeCCcchhHHHhhhhhhceEEEeeeccc
Confidence 33445556665543 335689999999999999999999877433 2333322222112221 23345777787764
Q ss_pred cc
Q 035724 290 LK 291 (1939)
Q Consensus 290 ~~ 291 (1939)
..
T Consensus 490 ~~ 491 (647)
T PHA02624 490 QP 491 (647)
T ss_pred cc
Confidence 33
No 387
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=93.48 E-value=0.13 Score=69.83 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=20.7
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHH
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
...++.||||||||.++..+.+.+
T Consensus 489 ~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 489 GSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 457999999999999999887655
No 388
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.47 E-value=0.072 Score=70.80 Aligned_cols=52 Identities=31% Similarity=0.477 Sum_probs=33.4
Q ss_pred EEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccch-----------hhHHhh----hccCCcEEEEeCCc
Q 035724 233 ELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASSS-----------YKLHRV----AMEQLKFLVIDEAA 288 (1939)
Q Consensus 233 ~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~sss-----------~~l~~l----~~~~fdvVIIDEAS 288 (1939)
.|+.||||||||-++.+++ ..|.|=+-+.+++ .+...+ +...+.+++|||.-
T Consensus 347 vLL~GPPGTGKTLLAKAiA----GEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar~~aP~iifideid 413 (774)
T KOG0731|consen 347 VLLVGPPGTGKTLLAKAIA----GEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEID 413 (774)
T ss_pred eEEECCCCCcHHHHHHHHh----cccCCceeeechHHHHHHhcccchHHHHHHHHHhhccCCeEEEecccc
Confidence 5999999999999998776 4455444433332 111111 34556788888865
No 389
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.43 E-value=0.19 Score=61.94 Aligned_cols=35 Identities=29% Similarity=0.373 Sum_probs=25.8
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHhcC-CcEEEE
Q 035724 229 KATVELIWGPPGTGKTKTVSMLLDFCFTK-ASLIFC 263 (1939)
Q Consensus 229 ~~~v~LI~GPPGTGKTtti~~li~~~l~~-a~vI~~ 263 (1939)
.+.+.++.||||+|||||++.++..+... .+|.+.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li 148 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLA 148 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEE
Confidence 35688899999999999999998554332 345444
No 390
>PRK10867 signal recognition particle protein; Provisional
Probab=93.39 E-value=0.15 Score=65.08 Aligned_cols=34 Identities=29% Similarity=0.439 Sum_probs=25.8
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHhcC--CcEEEE
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCFTK--ASLIFC 263 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l~~--a~vI~~ 263 (1939)
+.+.++.||||+|||||++.++..+... .+|.+.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV 135 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLV 135 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEE
Confidence 5678999999999999999998655433 445443
No 391
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.37 E-value=0.19 Score=63.96 Aligned_cols=36 Identities=25% Similarity=0.265 Sum_probs=26.8
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHhc-CCcEEEEcc
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCFT-KASLIFCTA 265 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l~-~a~vI~~T~ 265 (1939)
+.+.++.||||+|||||++.++..+.. +.+|.+.++
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~ 136 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCA 136 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcC
Confidence 568899999999999999999855433 345555433
No 392
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=93.34 E-value=0.23 Score=58.46 Aligned_cols=52 Identities=29% Similarity=0.348 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHh-cccCCCCCcEEEEeCCCCCchhHHHHHHHHHHh-cCCcEEEE
Q 035724 211 DSQAQAVLSCLR-RTHCDHKATVELIWGPPGTGKTKTVSMLLDFCF-TKASLIFC 263 (1939)
Q Consensus 211 ~sQ~~AV~~~L~-~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l-~~a~vI~~ 263 (1939)
+.|++++..=.. -..+. +..-+|+||++|||||.++.+++.... +.-++|-.
T Consensus 33 e~Qk~~l~~Nt~~Fl~G~-pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev 86 (249)
T PF05673_consen 33 ERQKEALIENTEQFLQGL-PANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEV 86 (249)
T ss_pred HHHHHHHHHHHHHHHcCC-CCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEE
Confidence 345555543333 22222 334469999999999999999885443 34555544
No 393
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.34 E-value=0.24 Score=61.27 Aligned_cols=78 Identities=23% Similarity=0.208 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccch---------hhHH---h----
Q 035724 210 NDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASSS---------YKLH---R---- 273 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~sss---------~~l~---~---- 273 (1939)
.++...++..++.. ....++.||||||||+++..+.+.+-.....|.||.... .... .
T Consensus 29 ~~~~~~~~l~a~~~------~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~ 102 (329)
T COG0714 29 DEEVIELALLALLA------GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFR 102 (329)
T ss_pred cHHHHHHHHHHHHc------CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEE
Confidence 34444444444443 355699999999999999999877766666677753221 1111 0
Q ss_pred h--hccCCc---EEEEeCCcccchH
Q 035724 274 V--AMEQLK---FLVIDEAAQLKEV 293 (1939)
Q Consensus 274 l--~~~~fd---vVIIDEASQ~~E~ 293 (1939)
. .+..-. ++++||...++..
T Consensus 103 ~~~gpl~~~~~~ill~DEInra~p~ 127 (329)
T COG0714 103 FVPGPLFAAVRVILLLDEINRAPPE 127 (329)
T ss_pred EecCCcccccceEEEEeccccCCHH
Confidence 0 112224 8999999999854
No 394
>PF13245 AAA_19: Part of AAA domain
Probab=93.34 E-value=0.075 Score=51.73 Aligned_cols=53 Identities=23% Similarity=0.319 Sum_probs=37.2
Q ss_pred CCcEE-EecCCCChHHHHHHHHHHHHhHhhhhhhcccccCCCccccccccccCccCCCCcccccceeEEEEecCHHHHHH
Q 035724 730 PKSSF-ILGRSGTGKTTILTMKLFQKEKLHHMAMDGFYGVNNSVTLHSSWESGAEEGLGETERPILRQLFVTVSPKLCFA 808 (1939)
Q Consensus 730 p~~~~-vlGrSGTGKTT~~L~kl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~qvfVT~S~~L~~~ 808 (1939)
+.+++ |.|.|||||||+++-++...-.. ... . | =+.+++|.+...+.+
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~~----~~~--------------------~-~------~~vlv~a~t~~aa~~ 57 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLAA----RAD--------------------P-G------KRVLVLAPTRAAADE 57 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHHH----hcC--------------------C-C------CeEEEECCCHHHHHH
Confidence 46655 59999999999999988887100 000 0 1 138999999988887
Q ss_pred HHHHH
Q 035724 809 VKQHI 813 (1939)
Q Consensus 809 vk~~~ 813 (1939)
+++..
T Consensus 58 l~~rl 62 (76)
T PF13245_consen 58 LRERL 62 (76)
T ss_pred HHHHH
Confidence 76555
No 395
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=93.33 E-value=3.4 Score=50.19 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHhCC
Q 035724 1069 KSRGIKLFHEHNYDMATICFEKAKD 1093 (1939)
Q Consensus 1069 ~~lG~~l~~q~~yd~A~kcF~rAgd 1093 (1939)
..+|..++-.++|..|+.+|-.|-+
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve 66 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVE 66 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHc
Confidence 6789999999999999999998743
No 396
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.33 E-value=0.23 Score=55.84 Aligned_cols=84 Identities=20% Similarity=0.220 Sum_probs=50.4
Q ss_pred CcEEEEeCCCCCchhHHHHHHH-HHHhcCCcEEEE-----------------------c-ccc--------hh--h----
Q 035724 230 ATVELIWGPPGTGKTKTVSMLL-DFCFTKASLIFC-----------------------T-ASS--------SY--K---- 270 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li-~~~l~~a~vI~~-----------------------T-~ss--------s~--~---- 270 (1939)
.++..|.+|+|+||||.+..+. +.+-...+|.+. . +.+ .. .
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~ 84 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKA 84 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHH
Confidence 4688999999999999998776 333233333221 0 000 00 0
Q ss_pred -----HHhhhccCCcEEEEeCCc------ccchHHhhccc-cCCCcceEEEEecc
Q 035724 271 -----LHRVAMEQLKFLVIDEAA------QLKEVESAIPL-KLPGIQHAILIGDE 313 (1939)
Q Consensus 271 -----l~~l~~~~fdvVIIDEAS------Q~~E~e~lipL-~~~~~~rlVLiGD~ 313 (1939)
...+....+|+||+||.. .+++.+.+-.+ ..|....+||-|-.
T Consensus 85 ~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~ 139 (173)
T TIGR00708 85 AWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRG 139 (173)
T ss_pred HHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCC
Confidence 011234689999999998 55555544333 24555688998863
No 397
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.33 E-value=0.12 Score=54.97 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=21.6
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHhcC
Q 035724 232 VELIWGPPGTGKTKTVSMLLDFCFTK 257 (1939)
Q Consensus 232 v~LI~GPPGTGKTtti~~li~~~l~~ 257 (1939)
+...+||||||||.+...|++.+++.
T Consensus 55 VlSfHG~tGtGKn~v~~liA~~ly~~ 80 (127)
T PF06309_consen 55 VLSFHGWTGTGKNFVSRLIAEHLYKS 80 (127)
T ss_pred EEEeecCCCCcHHHHHHHHHHHHHhc
Confidence 34589999999999999999877653
No 398
>PRK09401 reverse gyrase; Reviewed
Probab=93.32 E-value=0.12 Score=73.11 Aligned_cols=37 Identities=24% Similarity=0.074 Sum_probs=29.4
Q ss_pred CCCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHH
Q 035724 206 SSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSM 249 (1939)
Q Consensus 206 ~~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~ 249 (1939)
+..+++.|+.++..++.. .=.++.+|.|||||++...
T Consensus 78 G~~pt~iQ~~~i~~il~g-------~dv~i~ApTGsGKT~f~l~ 114 (1176)
T PRK09401 78 GSKPWSLQRTWAKRLLLG-------ESFAIIAPTGVGKTTFGLV 114 (1176)
T ss_pred CCCCcHHHHHHHHHHHCC-------CcEEEEcCCCCCHHHHHHH
Confidence 346789999999999873 3348999999999976543
No 399
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.30 E-value=0.16 Score=56.63 Aligned_cols=32 Identities=31% Similarity=0.407 Sum_probs=23.9
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHhcC-CcEEEE
Q 035724 232 VELIWGPPGTGKTKTVSMLLDFCFTK-ASLIFC 263 (1939)
Q Consensus 232 v~LI~GPPGTGKTtti~~li~~~l~~-a~vI~~ 263 (1939)
+.++.||||+||||++..++..+... .++++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i 34 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLV 34 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 56899999999999999888555433 345444
No 400
>PF13479 AAA_24: AAA domain
Probab=93.30 E-value=0.076 Score=61.56 Aligned_cols=19 Identities=53% Similarity=0.920 Sum_probs=16.9
Q ss_pred EEEEeCCCCCchhHHHHHH
Q 035724 232 VELIWGPPGTGKTKTVSML 250 (1939)
Q Consensus 232 v~LI~GPPGTGKTtti~~l 250 (1939)
-.+|.||||+|||+++..+
T Consensus 5 ~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 5 KILIYGPPGSGKTTLAASL 23 (213)
T ss_pred EEEEECCCCCCHHHHHHhC
Confidence 4699999999999999866
No 401
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=93.24 E-value=0.15 Score=66.90 Aligned_cols=33 Identities=27% Similarity=0.276 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKT 246 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtt 246 (1939)
..+++.|.+|+..++.. .=.++..|.|||||..
T Consensus 142 ~~ptpiQ~~aip~il~g-------~dviv~ApTGSGKTla 174 (518)
T PLN00206 142 EFPTPIQMQAIPAALSG-------RSLLVSADTGSGKTAS 174 (518)
T ss_pred CCCCHHHHHHHHHHhcC-------CCEEEEecCCCCccHH
Confidence 46899999999999973 2359999999999964
No 402
>CHL00095 clpC Clp protease ATP binding subunit
Probab=93.24 E-value=0.14 Score=70.84 Aligned_cols=42 Identities=26% Similarity=0.405 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHh
Q 035724 210 NDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCF 255 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l 255 (1939)
-+.+.+.+..+|... ..+++ ++.||||||||+++..++..+.
T Consensus 184 r~~ei~~~~~~L~r~---~~~n~-lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 184 REKEIERVIQILGRR---TKNNP-ILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred cHHHHHHHHHHHccc---ccCCe-EEECCCCCCHHHHHHHHHHHHH
Confidence 345566666666632 33444 8999999999999988886553
No 403
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=93.23 E-value=0.15 Score=69.44 Aligned_cols=34 Identities=26% Similarity=0.507 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHH
Q 035724 212 SQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLL 251 (1939)
Q Consensus 212 sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li 251 (1939)
..+..+..++.. +++.+|.||||+||||-+-..+
T Consensus 53 ~~~~~i~~ai~~------~~vvii~getGsGKTTqlP~~l 86 (845)
T COG1643 53 AVRDEILKAIEQ------NQVVIIVGETGSGKTTQLPQFL 86 (845)
T ss_pred HHHHHHHHHHHh------CCEEEEeCCCCCChHHHHHHHH
Confidence 456777888874 7899999999999999987665
No 404
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=93.22 E-value=0.18 Score=66.39 Aligned_cols=24 Identities=38% Similarity=0.771 Sum_probs=19.9
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDF 253 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~ 253 (1939)
+...+|.||||||||+++..+.+.
T Consensus 86 ~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 86 PQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 345599999999999999888754
No 405
>PRK10876 recB exonuclease V subunit beta; Provisional
Probab=93.19 E-value=0.23 Score=70.99 Aligned_cols=86 Identities=16% Similarity=0.088 Sum_probs=56.3
Q ss_pred ccCCcEEEEeCCcccchHHhh--ccccCC-CcceEEEEeccccCCcceeccccccccccCCHHHHHHhcCCccccccccc
Q 035724 276 MEQLKFLVIDEAAQLKEVESA--IPLKLP-GIQHAILIGDECQLPAMVESSVSGEACLGRSLFERLSNLGQAKHLLSIQY 352 (1939)
Q Consensus 276 ~~~fdvVIIDEASQ~~E~e~l--ipL~~~-~~~rlVLiGD~~QLpPvV~s~~~~~~gl~~SLFeRL~~~~~~~~~L~~QY 352 (1939)
..+|++++|||.--.+..+.- ..+... +...+++|||++|--= .-.|-+...|-.........+.|+++|
T Consensus 375 ~~~y~~ilIDEfQDT~~~Q~~il~~L~~~~~~~~l~~VGDpkQsIY-------~FRGAd~~~~l~~~~~~~~~~~L~~Ny 447 (1181)
T PRK10876 375 RTRYPVAMIDEFQDTDPQQYRIFRRIYRHQPETALLLIGDPKQAIY-------AFRGADIFTYMKARSEVSAHYTLDTNW 447 (1181)
T ss_pred HhCCCEEEEECCccCCHHHHHHHHHHHcCCCCCeEEEEeCCccccc-------cCCCCCchHHHHHHhccCCeeECCCCc
Confidence 358999999999999877433 333221 2357999999999321 111112222222222223457899999
Q ss_pred cCChhhhccCcccccC
Q 035724 353 RMHPSISSFPNSYFYD 368 (1939)
Q Consensus 353 Rmhp~I~~f~S~~FY~ 368 (1939)
|++|.|.++.|..|-.
T Consensus 448 RS~~~Iv~~~N~lf~~ 463 (1181)
T PRK10876 448 RSAPGMVNSVNKLFSQ 463 (1181)
T ss_pred CcCHHHHHHHHHHHhc
Confidence 9999999999988854
No 406
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=93.17 E-value=0.053 Score=65.06 Aligned_cols=24 Identities=42% Similarity=0.566 Sum_probs=19.8
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHH
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
+-.|..||||||||+|+.+..+.+
T Consensus 63 Ph~L~YgPPGtGktsti~a~a~~l 86 (360)
T KOG0990|consen 63 PHLLFYGPPGTGKTSTILANARDF 86 (360)
T ss_pred CcccccCCCCCCCCCchhhhhhhh
Confidence 456999999999999998887444
No 407
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.13 E-value=0.12 Score=65.13 Aligned_cols=67 Identities=22% Similarity=0.424 Sum_probs=0.0
Q ss_pred HHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHH-hcCCcEEEE-------cccchhhHHhh------------hccC
Q 035724 219 SCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFC-FTKASLIFC-------TASSSYKLHRV------------AMEQ 278 (1939)
Q Consensus 219 ~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~-l~~a~vI~~-------T~sss~~l~~l------------~~~~ 278 (1939)
..+....|+|-.++ |+.||||||||-.+..|=+.+ .+..+||-+ .+.+-.....+ ....
T Consensus 246 ~vie~lGi~HVKGi-LLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~Sg 324 (744)
T KOG0741|consen 246 EVIEQLGIKHVKGI-LLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSG 324 (744)
T ss_pred HHHHHcCccceeeE-EEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCC
Q ss_pred CcEEEEeC
Q 035724 279 LKFLVIDE 286 (1939)
Q Consensus 279 fdvVIIDE 286 (1939)
..++|.||
T Consensus 325 LHIIIFDE 332 (744)
T KOG0741|consen 325 LHIIIFDE 332 (744)
T ss_pred ceEEEehh
No 408
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.12 E-value=0.1 Score=58.36 Aligned_cols=33 Identities=30% Similarity=0.338 Sum_probs=24.9
Q ss_pred EEEeCCCCCchhHHHHHHHHH-HhcCCcEEEEcc
Q 035724 233 ELIWGPPGTGKTKTVSMLLDF-CFTKASLIFCTA 265 (1939)
Q Consensus 233 ~LI~GPPGTGKTtti~~li~~-~l~~a~vI~~T~ 265 (1939)
.+|.||||||||+++..++.. +..+..++..|+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 689999999999999888744 444556655544
No 409
>PHA02774 E1; Provisional
Probab=93.11 E-value=0.2 Score=65.04 Aligned_cols=56 Identities=29% Similarity=0.475 Sum_probs=37.8
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEccc-chhhHHhhhccCCcEEEEeCCccc
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTAS-SSYKLHRVAMEQLKFLVIDEAAQL 290 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~s-ss~~l~~l~~~~fdvVIIDEASQ~ 290 (1939)
.-.+|+||||||||++...|++.+- ..++....+ +.+-+. .....+++|+||+...
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~--G~vi~fvN~~s~FwLq--pl~d~ki~vlDD~t~~ 491 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLK--GKVISFVNSKSHFWLQ--PLADAKIALLDDATHP 491 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC--CCEEEEEECccccccc--hhccCCEEEEecCcch
Confidence 5679999999999999999998762 444432222 222221 2235689999999544
No 410
>PRK12370 invasion protein regulator; Provisional
Probab=93.10 E-value=2.9 Score=55.53 Aligned_cols=124 Identities=10% Similarity=-0.026 Sum_probs=75.8
Q ss_pred cCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHH
Q 035724 1062 ASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAA 1141 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAa 1141 (1939)
...++-|..+|..+...+++++|+.+|++|-.. +|.... .+...+..|...|++++|+
T Consensus 335 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l---------------------~P~~~~-a~~~lg~~l~~~G~~~eAi 392 (553)
T PRK12370 335 HNNPQALGLLGLINTIHSEYIVGSLLFKQANLL---------------------SPISAD-IKYYYGWNLFMAGQLEEAL 392 (553)
T ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------------------CCCCHH-HHHHHHHHHHHCCCHHHHH
Confidence 346778888888888889999999988876220 233222 3445577777788888887
Q ss_pred HHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHcc------CH---HHHHHHHHhcCChHHHHHHH
Q 035724 1142 KCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGK------FF---SECLAVCSKGKLFEIGLQYM 1212 (1939)
Q Consensus 1142 ecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kag------d~---dkAI~my~k~k~fd~airLv 1212 (1939)
+.|.++-..+-. ........+..+...|++++|.+.|.++- .. .....++...|++++|....
T Consensus 393 ~~~~~Al~l~P~--------~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~ 464 (553)
T PRK12370 393 QTINECLKLDPT--------RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLT 464 (553)
T ss_pred HHHHHHHhcCCC--------ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 777654221000 00011111223445788898988887752 11 12334566788889888887
Q ss_pred Hhh
Q 035724 1213 NHW 1215 (1939)
Q Consensus 1213 ~q~ 1215 (1939)
++.
T Consensus 465 ~~~ 467 (553)
T PRK12370 465 KEI 467 (553)
T ss_pred HHh
Confidence 753
No 411
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=93.10 E-value=0.19 Score=67.51 Aligned_cols=42 Identities=29% Similarity=0.237 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLL 251 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li 251 (1939)
..||..|..|+..+..+. +.....|++|.+|+|||-.-..++
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~---~~~~~~Ll~GvTGSGKTEvYl~~i 238 (730)
T COG1198 197 LALNQEQQAAVEAILSSL---GGFAPFLLDGVTGSGKTEVYLEAI 238 (730)
T ss_pred cccCHHHHHHHHHHHHhc---ccccceeEeCCCCCcHHHHHHHHH
Confidence 579999999999998853 225678999999999998877776
No 412
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.08 E-value=0.16 Score=48.30 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.0
Q ss_pred EEEeCCCCCchhHHHHHHHHHH
Q 035724 233 ELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 233 ~LI~GPPGTGKTtti~~li~~~ 254 (1939)
..|.||||+||||++..+.+.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4688999999999999887665
No 413
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=93.06 E-value=0.14 Score=70.24 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=21.8
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
.++.+++||||||||+++..+.+.+
T Consensus 347 ~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999988665
No 414
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.04 E-value=0.17 Score=69.13 Aligned_cols=24 Identities=38% Similarity=0.619 Sum_probs=20.4
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHH
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
.-.+++||||||||+++..+...+
T Consensus 213 ~giLL~GppGtGKT~laraia~~~ 236 (733)
T TIGR01243 213 KGVLLYGPPGTGKTLLAKAVANEA 236 (733)
T ss_pred ceEEEECCCCCChHHHHHHHHHHh
Confidence 456999999999999998887654
No 415
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.02 E-value=2.8 Score=48.94 Aligned_cols=155 Identities=15% Similarity=0.180 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 035724 1067 EWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCFYN 1146 (1939)
Q Consensus 1067 eW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy~k 1146 (1939)
.-..+|..++++|++..|.+-.++|=. .+|. .-..+.--|.+|.+.|+.+.|-+.|.+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~---------------------~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~Yrk 94 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE---------------------HDPS-YYLAHLVRAHYYQKLGENDLADESYRK 94 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH---------------------hCcc-cHHHHHHHHHHHHHcCChhhHHHHHHH
Confidence 346789999999999999988887621 1233 223456678899999999998666554
Q ss_pred hCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHc----------cCHHHHHHHHHhcCChHHHHHHHHhhh
Q 035724 1147 LGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKG----------KFFSECLAVCSKGKLFEIGLQYMNHWK 1216 (1939)
Q Consensus 1147 ag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~ka----------gd~dkAI~my~k~k~fd~airLv~q~~ 1216 (1939)
|..+-- -.-..+...|-+++..|+|++|-..+.++ +-++.+.-|..+.|+++.|..+.++=-
T Consensus 95 ------Alsl~p--~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL 166 (250)
T COG3063 95 ------ALSLAP--NNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRAL 166 (250)
T ss_pred ------HHhcCC--CccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHH
Confidence 343310 11234788899999999999999998887 336666667778888888888877433
Q ss_pred hcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcc
Q 035724 1217 QHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRS 1272 (1939)
Q Consensus 1217 d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s 1272 (1939)
++.+.. -...++. +....+.||.-.|+-++..+..
T Consensus 167 ~~dp~~--------------------~~~~l~~-a~~~~~~~~y~~Ar~~~~~~~~ 201 (250)
T COG3063 167 ELDPQF--------------------PPALLEL-ARLHYKAGDYAPARLYLERYQQ 201 (250)
T ss_pred HhCcCC--------------------ChHHHHH-HHHHHhcccchHHHHHHHHHHh
Confidence 322211 1112333 3445566777777766654433
No 416
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=93.01 E-value=0.35 Score=53.72 Aligned_cols=32 Identities=16% Similarity=0.016 Sum_probs=23.3
Q ss_pred cEEEEeCCCCCchhHHHHHHH-HHHhcCCcEEE
Q 035724 231 TVELIWGPPGTGKTKTVSMLL-DFCFTKASLIF 262 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li-~~~l~~a~vI~ 262 (1939)
++..|.+|||+||||.+..+. +.+-...+|.+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~ 35 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGV 35 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 567899999999999997776 44444444444
No 417
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=93.00 E-value=0.17 Score=70.14 Aligned_cols=27 Identities=37% Similarity=0.610 Sum_probs=23.1
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHHhcC
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFCFTK 257 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~l~~ 257 (1939)
...++.||||||||+++..+.+.++..
T Consensus 596 ~~~Lf~Gp~GvGKt~lA~~La~~l~~~ 622 (852)
T TIGR03346 596 GSFLFLGPTGVGKTELAKALAEFLFDD 622 (852)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 467999999999999999999776653
No 418
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.90 E-value=0.12 Score=70.62 Aligned_cols=56 Identities=25% Similarity=0.365 Sum_probs=34.4
Q ss_pred EEEeCCCCCchhHHHHHHHHHHhcCCcEEEEccc---------chhhHHh----hhccCCcEEEEeCCccc
Q 035724 233 ELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTAS---------SSYKLHR----VAMEQLKFLVIDEAAQL 290 (1939)
Q Consensus 233 ~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~s---------ss~~l~~----l~~~~fdvVIIDEASQ~ 290 (1939)
.|++||||||||+++.++...+- ...+...++ +...+.. .....+.+|+|||+-.+
T Consensus 490 iLL~GppGtGKT~lakalA~e~~--~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l 558 (733)
T TIGR01243 490 VLLFGPPGTGKTLLAKAVATESG--ANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAI 558 (733)
T ss_pred EEEECCCCCCHHHHHHHHHHhcC--CCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhh
Confidence 58999999999999999986653 222222111 1111111 13345789999998644
No 419
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=92.90 E-value=0.071 Score=56.98 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=19.3
Q ss_pred EEEEeCCCCCchhHHHHHHHHHH
Q 035724 232 VELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 232 v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
+.++.||||+||||++..+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 46899999999999998887433
No 420
>PTZ00110 helicase; Provisional
Probab=92.89 E-value=0.18 Score=66.47 Aligned_cols=33 Identities=21% Similarity=0.166 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKT 246 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtt 246 (1939)
..+++-|.+|+-.+++. ..+ ++.+|.|||||.+
T Consensus 151 ~~pt~iQ~~aip~~l~G------~dv-I~~ApTGSGKTla 183 (545)
T PTZ00110 151 TEPTPIQVQGWPIALSG------RDM-IGIAETGSGKTLA 183 (545)
T ss_pred CCCCHHHHHHHHHHhcC------CCE-EEEeCCCChHHHH
Confidence 46899999999999974 344 8899999999985
No 421
>TIGR02773 addB_Gpos ATP-dependent nuclease subunit B. DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RexAB) in other. The AddA protein is conserved between the firmicutes and the alphaproteobacteria, while the partner protein is not. Nevertheless, the partner is designated AddB in both systems. This model describes the AddB protein as found Bacillus subtilis and related species. Although the RexB protein of Streptococcus and Lactococcus is considered to be orthologous, functionally equivalent, and merely named differently, all members of this protein family have a P-loop nucleotide binding motif GxxGxGK[ST] at the N-terminus, unlike RexB proteins, and a CxxCxxxxxC motif at the C-terminus, both of which may be relevant to function.
Probab=92.89 E-value=0.082 Score=75.66 Aligned_cols=72 Identities=19% Similarity=0.076 Sum_probs=50.1
Q ss_pred HhhhhCCceEEEEeecccCCCCCEEEEeccCCCCCccccccCCCCCCCCCChh---------------HhhhhhHHHHhh
Q 035724 946 ISNYVGKQALVLTIVESKGLEFQVIHYTSQCCNSPFKHALFDSTSPGSFPSFN---------------EAKHNVLCSELK 1010 (1939)
Q Consensus 946 i~~~l~~~~lVmTihesKGLEF~~Vil~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~~Elk 1010 (1939)
++..+ ....|.|+|.++|++|++|++.++..+..+.. ....+-++ +........|..
T Consensus 575 ip~~~-d~V~v~~~~~~r~~~~k~v~vlG~ndg~~P~~-------~~~~~ll~d~er~~L~~~g~~l~~~~~~~~~~e~~ 646 (1158)
T TIGR02773 575 IPPAL-DQVSVGTMDRAKSDNTKVIYLLGMNDGVMPAR-------SKEEGILSDEERELLEQQGVELSPTSKIKIFDEQF 646 (1158)
T ss_pred CCCCc-CEEEEeccccccccCcCEEEEeCCCCCcCCCC-------CCCCCCcCHHHHHHHHHCCCCCCCChHHHhhcCcH
Confidence 33444 36789999999999999999999988733221 11111111 112234556888
Q ss_pred hheeeeccccceEEE
Q 035724 1011 QLYVAITRTRQRLWI 1025 (1939)
Q Consensus 1011 ~LYVA~TRAr~~L~I 1025 (1939)
++|+|+|||+++|+|
T Consensus 647 ~~y~alt~a~~~L~l 661 (1158)
T TIGR02773 647 LVYTAFTSASERLKI 661 (1158)
T ss_pred HHHHHhcCccceEEE
Confidence 999999999999999
No 422
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=92.87 E-value=0.19 Score=58.42 Aligned_cols=39 Identities=31% Similarity=0.483 Sum_probs=28.7
Q ss_pred CCcEEEEeCCCCCchhHHHHHHH-HHHhc-CCcEEEEcccc
Q 035724 229 KATVELIWGPPGTGKTKTVSMLL-DFCFT-KASLIFCTASS 267 (1939)
Q Consensus 229 ~~~v~LI~GPPGTGKTtti~~li-~~~l~-~a~vI~~T~ss 267 (1939)
...+.+|.||||||||++...++ +.+.+ ..+++..|+..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee 58 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE 58 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC
Confidence 36789999999999999998877 55555 67777766543
No 423
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=92.78 E-value=0.28 Score=60.75 Aligned_cols=42 Identities=19% Similarity=0.068 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcCCcE
Q 035724 213 QAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTKASL 260 (1939)
Q Consensus 213 Q~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~a~v 260 (1939)
..+.+..++.. ..-.+|.||+|+||||++.+++..+-...++
T Consensus 149 ~~~~L~~~v~~------~~nili~G~tgSGKTTll~aL~~~ip~~~ri 190 (332)
T PRK13900 149 IKEFLEHAVIS------KKNIIISGGTSTGKTTFTNAALREIPAIERL 190 (332)
T ss_pred HHHHHHHHHHc------CCcEEEECCCCCCHHHHHHHHHhhCCCCCeE
Confidence 44556666653 3456999999999999999998655444443
No 424
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=92.76 E-value=0.11 Score=62.15 Aligned_cols=26 Identities=35% Similarity=0.524 Sum_probs=21.0
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 229 KATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 229 ~~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
.+...+||||||||||..+..+...+
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~m 190 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATM 190 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhc
Confidence 35678999999999999887776544
No 425
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.69 E-value=0.098 Score=63.96 Aligned_cols=60 Identities=25% Similarity=0.300 Sum_probs=37.4
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccchh------h----HHhh-hccCCcEEEEeCCcccc
Q 035724 232 VELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASSSY------K----LHRV-AMEQLKFLVIDEAAQLK 291 (1939)
Q Consensus 232 v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~sss~------~----l~~l-~~~~fdvVIIDEASQ~~ 291 (1939)
-.|++||||||||.++.++.+......--|.....++. . +..+ ....+.+++|||+-+..
T Consensus 129 GiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L 199 (386)
T KOG0737|consen 129 GILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFL 199 (386)
T ss_pred cceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHH
Confidence 35999999999999999998665444333322211110 0 1111 23567899999987654
No 426
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=92.65 E-value=0.17 Score=59.49 Aligned_cols=90 Identities=24% Similarity=0.259 Sum_probs=53.7
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccchhhH-Hhh---hccCCcEEEEeCCcccchHHh-hccc-----
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASSSYKL-HRV---AMEQLKFLVIDEAAQLKEVES-AIPL----- 299 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~sss~~l-~~l---~~~~fdvVIIDEASQ~~E~e~-lipL----- 299 (1939)
.-...+.||+|||||.|+..+.+.+-+..-+.-|+....... .++ -...--++.+||..++..... .+.-
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~GaW~cfdefnrl~~~vLS~i~~~i~~i 111 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQSGAWLCFDEFNRLSEEVLSVISQQIQSI 111 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHHT-EEEEETCCCSSHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhcCchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 345578999999999999999766655555555654433221 111 112346899999999986521 1111
Q ss_pred ---cCCCcceEEEEeccccCCcc
Q 035724 300 ---KLPGIQHAILIGDECQLPAM 319 (1939)
Q Consensus 300 ---~~~~~~rlVLiGD~~QLpPv 319 (1939)
...+.+++.+.|+.-.+.|.
T Consensus 112 ~~al~~~~~~~~~~g~~i~l~~~ 134 (231)
T PF12774_consen 112 QDALRAKQKSFTLEGQEIKLNPN 134 (231)
T ss_dssp HHHHHCTSSEEEETTCEEE--TT
T ss_pred HHhhcccccccccCCCEEEEccc
Confidence 12355778888887777664
No 427
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.64 E-value=0.25 Score=62.42 Aligned_cols=37 Identities=27% Similarity=0.400 Sum_probs=27.4
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHH--hcCCcEEEEccc
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFC--FTKASLIFCTAS 266 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~--l~~a~vI~~T~s 266 (1939)
+.+.++.||+|+|||||+..++... ..+.+|.+.|+.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~D 261 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTD 261 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEeccc
Confidence 4578899999999999999998543 334566665543
No 428
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=92.64 E-value=0.19 Score=63.04 Aligned_cols=34 Identities=24% Similarity=0.407 Sum_probs=25.7
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHhcC-CcEEEE
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCFTK-ASLIFC 263 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l~~-a~vI~~ 263 (1939)
..+.+|.||||+|||+++..++...... .+++..
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYv 116 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYV 116 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 5789999999999999998887544332 455544
No 429
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=92.64 E-value=0.31 Score=65.55 Aligned_cols=134 Identities=19% Similarity=0.214 Sum_probs=85.5
Q ss_pred HHHHHHHHHhcc--------cCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccchh----hHHhhhccCCc
Q 035724 213 QAQAVLSCLRRT--------HCDHKATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASSSY----KLHRVAMEQLK 280 (1939)
Q Consensus 213 Q~~AV~~~L~~~--------~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~sss~----~l~~l~~~~fd 280 (1939)
|.+||..+..+. ..+.+-..++..||.|+|||.++.+++..++....-++---.|-+ ...++-..++-
T Consensus 496 Qd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPG 575 (786)
T COG0542 496 QDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPG 575 (786)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCC
Confidence 677777666543 123333567999999999999999999888765443332111111 11122233334
Q ss_pred EEEEeCCcccchHHhhccccCCCcceEEEEeccccCCcceeccccccccccCCHHHHHHhcCCccccccccccCChhhhc
Q 035724 281 FLVIDEAAQLKEVESAIPLKLPGIQHAILIGDECQLPAMVESSVSGEACLGRSLFERLSNLGQAKHLLSIQYRMHPSISS 360 (1939)
Q Consensus 281 vVIIDEASQ~~E~e~lipL~~~~~~rlVLiGD~~QLpPvV~s~~~~~~gl~~SLFeRL~~~~~~~~~L~~QYRmhp~I~~ 360 (1939)
+|=-||.+|++ |.+.+.++.++.|++-=..||+|..
T Consensus 576 YVGyeeGG~LT--------------------------------------------EaVRr~PySViLlDEIEKAHpdV~n 611 (786)
T COG0542 576 YVGYEEGGQLT--------------------------------------------EAVRRKPYSVILLDEIEKAHPDVFN 611 (786)
T ss_pred Cceeccccchh--------------------------------------------HhhhcCCCeEEEechhhhcCHHHHH
Confidence 44444444444 4444555667778888888999999
Q ss_pred cCcccccCCCCCCCCcccccccccccCCCCCCCCeEEEEcC
Q 035724 361 FPNSYFYDNKIFDSPNVKEKNYEKRFLPGRMYGPYSFINVL 401 (1939)
Q Consensus 361 f~S~~FY~gkL~~~~~v~~~~~~~~~l~~p~~~p~~Fidv~ 401 (1939)
..=+.|=+|+|.|+....- .|.+.++|=|+
T Consensus 612 ilLQVlDdGrLTD~~Gr~V-----------dFrNtiIImTS 641 (786)
T COG0542 612 LLLQVLDDGRLTDGQGRTV-----------DFRNTIIIMTS 641 (786)
T ss_pred HHHHHhcCCeeecCCCCEE-----------ecceeEEEEec
Confidence 9999999999999876332 15566666663
No 430
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=92.63 E-value=0.19 Score=60.63 Aligned_cols=43 Identities=23% Similarity=0.327 Sum_probs=34.8
Q ss_pred CCCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHH
Q 035724 206 SSTLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLL 251 (1939)
Q Consensus 206 ~~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li 251 (1939)
...|++-|+.|-...+..... ..-+|||.-.|.|||.++-..+
T Consensus 95 ~G~Ls~~Q~~as~~l~q~i~~---k~~~lv~AV~GaGKTEMif~~i 137 (441)
T COG4098 95 KGTLSPGQKKASNQLVQYIKQ---KEDTLVWAVTGAGKTEMIFQGI 137 (441)
T ss_pred ccccChhHHHHHHHHHHHHHh---cCcEEEEEecCCCchhhhHHHH
Confidence 468999999998888886532 4557999999999999886555
No 431
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=92.58 E-value=0.21 Score=59.97 Aligned_cols=40 Identities=30% Similarity=0.280 Sum_probs=25.6
Q ss_pred HHHHHHHHHhcc------cCCCCCcEEEEeCCCCCchhHHHHHHHH
Q 035724 213 QAQAVLSCLRRT------HCDHKATVELIWGPPGTGKTKTVSMLLD 252 (1939)
Q Consensus 213 Q~~AV~~~L~~~------~~~~~~~v~LI~GPPGTGKTtti~~li~ 252 (1939)
|.+||...+... .......=.++.-.+|+|||.++.+++.
T Consensus 2 Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~ 47 (299)
T PF00176_consen 2 QLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS 47 (299)
T ss_dssp HHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh
Confidence 888888887753 0112234458888999999999988774
No 432
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.56 E-value=6.5 Score=49.78 Aligned_cols=119 Identities=13% Similarity=0.092 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcch---HHHH-HHhhhHHh---------hhhhhcCCchHhHHHHHHHHHH
Q 035724 1064 SPEEWKSRGIKLFHEHNYDMATICFEKAKDSYW---EGRS-KATGLKAT---------ADRCRSSNPKQANVNLREAAKI 1130 (1939)
Q Consensus 1064 tpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~---~~l~-kA~~l~e~---------a~~~~s~~~~ea~~~y~eAA~l 1130 (1939)
-||-+--.|.++--.++-+.|+..|+||-.... ..|. ..+...+- -+.....+|..+ ..|...++.
T Consensus 329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~Dy-RAWYGLGQa 407 (559)
T KOG1155|consen 329 RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDY-RAWYGLGQA 407 (559)
T ss_pred CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhH-HHHhhhhHH
Confidence 344555668888888999999999999854211 1111 01111110 111222344433 245677788
Q ss_pred HHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC
Q 035724 1131 FEAIGKADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF 1191 (1939)
Q Consensus 1131 Ye~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd 1191 (1939)
|+-.+.+.-|.-.|.++- ++ +--+.-.|.--|+||++.++..+|.++|.++-.
T Consensus 408 Yeim~Mh~YaLyYfqkA~------~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKAL------EL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHHhcchHHHHHHHHHHH------hc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 888888777765555443 22 001123477789999999999999999988643
No 433
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.55 E-value=0.2 Score=64.75 Aligned_cols=35 Identities=29% Similarity=0.393 Sum_probs=25.5
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHhc---CCcEEEEc
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCFT---KASLIFCT 264 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l~---~a~vI~~T 264 (1939)
..+..|.||+|+|||||+..|...+.. ..+|.+.+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLId 387 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVT 387 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 467888999999999999988854432 23455544
No 434
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=92.55 E-value=0.35 Score=64.58 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTV 247 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti 247 (1939)
..+++-|.+|+..++.. .. .++..|.|+|||...
T Consensus 12 ~~fr~~Q~~~i~~il~g------~d-vlv~~PTG~GKTl~y 45 (591)
T TIGR01389 12 DDFRPGQEEIISHVLDG------RD-VLVVMPTGGGKSLCY 45 (591)
T ss_pred CCCCHHHHHHHHHHHcC------CC-EEEEcCCCccHhHHH
Confidence 36899999999999974 23 588999999999865
No 435
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=92.54 E-value=0.26 Score=62.92 Aligned_cols=35 Identities=29% Similarity=0.378 Sum_probs=26.8
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHh--cCCcEEEEc
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCF--TKASLIFCT 264 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l--~~a~vI~~T 264 (1939)
+.+.++.||||+|||||++.++..+. .+.+|.+.+
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~ 135 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVA 135 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 56889999999999999999987653 344555443
No 436
>PTZ00293 thymidine kinase; Provisional
Probab=92.53 E-value=0.19 Score=58.06 Aligned_cols=82 Identities=18% Similarity=0.265 Sum_probs=44.9
Q ss_pred CcEEEEeCCCCCchhH-HHHHHHHHHhcCCcEEEEcccchhh----------------------HHhh--hccCCcEEEE
Q 035724 230 ATVELIWGPPGTGKTK-TVSMLLDFCFTKASLIFCTASSSYK----------------------LHRV--AMEQLKFLVI 284 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTt-ti~~li~~~l~~a~vI~~T~sss~~----------------------l~~l--~~~~fdvVII 284 (1939)
..+.+|.||-|+|||+ ++..+-+....+.++++......-+ ...+ ...++|+|+|
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~ag~kv~~~kp~~DtR~~~~~~I~Sh~g~~~~a~~v~~~~e~~~~~~~~dvI~I 83 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKYSKDTRYSDEQNISSHDKQMLKAIKVSKLKEVLETAKNYDVIAI 83 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHcCCceEEEEecccccCCCCCcEEecCCCcceeEEcCCHHHHHHhccCCCEEEE
Confidence 4689999999999999 5555444444444444332110000 0000 1246899999
Q ss_pred eCCcccchHHhhccccCCCcceEEEEe
Q 035724 285 DEAAQLKEVESAIPLKLPGIQHAILIG 311 (1939)
Q Consensus 285 DEASQ~~E~e~lipL~~~~~~rlVLiG 311 (1939)
|||.-.+.-.-++-........+|..|
T Consensus 84 DEaQFf~~i~~~~~~l~~~g~~VivaG 110 (211)
T PTZ00293 84 DEGQFFPDLVEFSEAAANLGKIVIVAA 110 (211)
T ss_pred EchHhhHhHHHHHHHHHHCCCeEEEEe
Confidence 999887542111111112345666665
No 437
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=92.48 E-value=5.6 Score=49.03 Aligned_cols=29 Identities=10% Similarity=0.055 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHhC
Q 035724 1064 SPEEWKSRGIKLFHEHNYDMATICFEKAK 1092 (1939)
Q Consensus 1064 tpeeW~~lG~~l~~q~~yd~A~kcF~rAg 1092 (1939)
..+-+...|..++..++++.|..+++++-
T Consensus 42 ~~e~~~~~a~~~~~~g~~~~A~~~~~~~l 70 (355)
T cd05804 42 ERERAHVEALSAWIAGDLPKALALLEQLL 70 (355)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34566778889999999999999999863
No 438
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=92.48 E-value=0.3 Score=65.36 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTV 247 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti 247 (1939)
..+.+.|++|+..++.. .-.++.+|.|+|||.+-
T Consensus 24 ~~~r~~Q~~ai~~il~g-------~dvlv~apTGsGKTl~y 57 (607)
T PRK11057 24 QQFRPGQQEIIDAVLSG-------RDCLVVMPTGGGKSLCY 57 (607)
T ss_pred CCCCHHHHHHHHHHHcC-------CCEEEEcCCCchHHHHH
Confidence 36789999999999873 23488999999999743
No 439
>PF05729 NACHT: NACHT domain
Probab=92.46 E-value=0.11 Score=56.48 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=22.0
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHhcC
Q 035724 232 VELIWGPPGTGKTKTVSMLLDFCFTK 257 (1939)
Q Consensus 232 v~LI~GPPGTGKTtti~~li~~~l~~ 257 (1939)
+.+|.|+||+|||+++..++..+...
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~ 27 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEE 27 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhc
Confidence 67999999999999999998665443
No 440
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.43 E-value=0.11 Score=67.94 Aligned_cols=25 Identities=40% Similarity=0.856 Sum_probs=20.1
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 229 KATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 229 ~~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
++++ |++||||||||-++.+++-.|
T Consensus 705 RSGI-LLYGPPGTGKTLlAKAVATEc 729 (953)
T KOG0736|consen 705 RSGI-LLYGPPGTGKTLLAKAVATEC 729 (953)
T ss_pred ccee-EEECCCCCchHHHHHHHHhhc
Confidence 3444 999999999999998887443
No 441
>PRK09087 hypothetical protein; Validated
Probab=92.41 E-value=0.18 Score=59.05 Aligned_cols=56 Identities=18% Similarity=0.207 Sum_probs=33.0
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccchhhHHhhhccCCcEEEEeCCccc
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASSSYKLHRVAMEQLKFLVIDEAAQL 290 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~sss~~l~~l~~~~fdvVIIDEASQ~ 290 (1939)
++..+|+||||+||||++..+.+.. .+. ..+.. ...........-++|+||+...+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~--~~~--~i~~~-~~~~~~~~~~~~~~l~iDDi~~~ 99 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS--DAL--LIHPN-EIGSDAANAAAEGPVLIEDIDAG 99 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc--CCE--EecHH-HcchHHHHhhhcCeEEEECCCCC
Confidence 4667999999999999998766432 222 22221 11111111112268999998755
No 442
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.39 E-value=0.032 Score=69.24 Aligned_cols=174 Identities=10% Similarity=-0.044 Sum_probs=102.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHccCHHHHHHHHHhcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHH
Q 035724 1167 EKAGECFFLAGCYKLAADVYAKGKFFSECLAVCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEF 1246 (1939)
Q Consensus 1167 ~qaAe~fE~~G~y~eAAelY~kagd~dkAI~my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~ 1246 (1939)
..+++..+..+++-+|+.+|+.+|+|+.+---|.+.+.|.++-+.+-...- .+.|...+ +..+.+.
T Consensus 176 ~dcd~~L~v~~qegeta~ltevggepdnm~~~y~k~n~w~kage~m~sVvs--------gKkhl~ya-k~nE~D~----- 241 (615)
T KOG2247|consen 176 CDCDNTLSVTTQEGETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVS--------GKKHLMYA-KYNELDE----- 241 (615)
T ss_pred cCcHHHHHHhhhccceeeeeeccCccchhhhheeeeeccccccceeeeeee--------cHHHHHHH-hhcCCCC-----
Confidence 355888888899999999999999999999888888888776655431100 00111111 1111111
Q ss_pred HHHHHHHHHhcCCHH---------------HHHHHHH-HhccHHHHHHHHHhhcCHHHHHHHHHhcCCHHHHHHHHHHcC
Q 035724 1247 LEKCAIHYYGLQDKK---------------SMMKFVK-SFRSVDLMRKFLKSLSCFDDLLVLEEESGNFMDAANIARLRG 1310 (1939)
Q Consensus 1247 le~aa~hy~kagD~k---------------~A~~~~~-~~~s~eeA~~~L~k~~~ldea~ell~e~G~feEAa~Lak~~G 1310 (1939)
.++..|...++.. +|..++. ..+.-+-..+|.++. ++..++....-.+-+++||.++..++
T Consensus 242 --pval~fq~~~gni~cyrwylDg~i~igf~ag~iV~iS~h~aeLgaeffqkl-dy~~aLqsiavsqcvnkaftlgdn~n 318 (615)
T KOG2247|consen 242 --PVALQFQEKYGNIHCYRWYLDGYILIGFDAGYIVSISAHNAELGAEFFQKL-DYRGALQSIAVSQCVNKAFTLGDNMN 318 (615)
T ss_pred --ccceEeeecCCceeEEEEeccccccccccceeEEEEeccchHHHHHHHHHh-hHHhhhHHHHHHHHHHHHHHHHhhhH
Confidence 1122344433321 1111111 234444456777777 78888888888899999999998886
Q ss_pred CH---HHHHHHHHHhCCHHHHHHHHHHHhhhhccccCCCCCCCCcchhhHHHHHHH
Q 035724 1311 DI---FLAVDLLQKAGCFKEACNVTLNHVISNSLWSPGSKGWPLKQFTKKKELLEK 1363 (1939)
Q Consensus 1311 k~---~eAi~my~kAG~~~eA~rva~~~~~~~~l~~~~~~~~~~~~~~~ae~ll~~ 1363 (1939)
+. .++.++|... .-.+..+.-...----+..-.-..|+..+--+|.|
T Consensus 319 kvRdl~el~e~y~n~------L~eaek~lge~~~t~dgqlyals~Q~g~l~~fLtK 368 (615)
T KOG2247|consen 319 KVRDLDELTEVYMNT------LIEAEKNLGEIEVTEDGQLYALSSQSGVLSIFLTK 368 (615)
T ss_pred HHHHHHHHHHHHHHH------HHHHHhccCceeeeeccceeeehhccchHHHHHHh
Confidence 54 5566677655 34444443222222223333444567777777777
No 443
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=92.35 E-value=0.049 Score=75.34 Aligned_cols=47 Identities=21% Similarity=0.369 Sum_probs=36.2
Q ss_pred ceEEEEeecccCCCCCEEEEeccCCCCCccccccCCCCCCCCCChhHhhhhhHHHHhhhheeeeccccceEEEecc
Q 035724 953 QALVLTIVESKGLEFQVIHYTSQCCNSPFKHALFDSTSPGSFPSFNEAKHNVLCSELKQLYVAITRTRQRLWIWEN 1028 (1939)
Q Consensus 953 ~~lVmTihesKGLEF~~Vil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Elk~LYVA~TRAr~~L~I~d~ 1028 (1939)
.+-.+|||+|.|.++|.|++.. . +. -...++|||+||||+.+.|+=.
T Consensus 656 laYA~TIHKSQGsT~d~V~vl~---~----------------~~----------~~r~l~YVAiTRar~~v~l~~~ 702 (988)
T PRK13889 656 HGYAATIHKAQGMTVDRTHVLA---T----------------PG----------MDAHSSYVALSRHRDGVDLHYG 702 (988)
T ss_pred chhhhhhHHhcCCCCCeEEEec---c----------------cc----------cccchhHHhhhhhhheEEEEec
Confidence 5558899999999999998852 1 00 1234699999999999999753
No 444
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=92.34 E-value=2.2 Score=56.01 Aligned_cols=148 Identities=15% Similarity=0.108 Sum_probs=95.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCH-HHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccCH--------HH
Q 035724 1124 LREAAKIFEAIGKADSAAKCFYNLGEY-ERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKFF--------SE 1194 (1939)
Q Consensus 1124 y~eAA~lYe~~G~~~kAaecy~kag~~-~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd~--------dk 1194 (1939)
+.=.|+||...|++++|.++.-++=+. ...+ ..+.--|..+..+|++.+|++.+..|... .+
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~---------ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK 267 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEHTPTLV---------ELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSK 267 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcH---------HHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHH
Confidence 455677777777777665544322111 1111 23556699999999999999999998663 46
Q ss_pred HHHHHHhcCChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHH-HHHHHHHHHHhcCCHHHHHHHHH----H
Q 035724 1195 CLAVCSKGKLFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQE-FLEKCAIHYYGLQDKKSMMKFVK----S 1269 (1939)
Q Consensus 1195 AI~my~k~k~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~-~le~aa~hy~kagD~k~A~~~~~----~ 1269 (1939)
|+..+.+.+..++|...+..+-.... .....+..+.-- |.-.|+..|.+.|++..|.+.+. .
T Consensus 268 ~aKy~LRa~~~e~A~~~~~~Ftr~~~-------------~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 268 CAKYLLRAGRIEEAEKTASLFTREDV-------------DPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhcCCCC-------------CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 78888899999999999987654321 111223333333 56678999999999998888664 3
Q ss_pred hccHHH-HHHH---HHhhcCHHHHHHHH
Q 035724 1270 FRSVDL-MRKF---LKSLSCFDDLLVLE 1293 (1939)
Q Consensus 1270 ~~s~ee-A~~~---L~k~~~ldea~ell 1293 (1939)
|+.|.+ +++| +.+++-+...++++
T Consensus 335 f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L 362 (517)
T PF12569_consen 335 FDDFEEDQFDFHSYCLRKMTLRAYVDML 362 (517)
T ss_pred HHHHhcccccHHHHHHhhccHHHHHHHH
Confidence 444433 4444 44456666666554
No 445
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.33 E-value=0.25 Score=63.79 Aligned_cols=37 Identities=30% Similarity=0.475 Sum_probs=27.6
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHh-cC--CcEEEEccc
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCF-TK--ASLIFCTAS 266 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l-~~--a~vI~~T~s 266 (1939)
..+.++.||+|+|||||++.|...+. .. .+|.+.++.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~D 295 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTD 295 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 46899999999999999999986553 32 356555443
No 446
>PRK13909 putative recombination protein RecB; Provisional
Probab=92.29 E-value=0.089 Score=73.40 Aligned_cols=86 Identities=23% Similarity=0.295 Sum_probs=60.2
Q ss_pred ccCCcEEEEeCCcccchHH--hhccccC---C-----CcceEEEEeccccCCcceeccccccccccCCHHHHHHhc-CCc
Q 035724 276 MEQLKFLVIDEAAQLKEVE--SAIPLKL---P-----GIQHAILIGDECQLPAMVESSVSGEACLGRSLFERLSNL-GQA 344 (1939)
Q Consensus 276 ~~~fdvVIIDEASQ~~E~e--~lipL~~---~-----~~~rlVLiGD~~QLpPvV~s~~~~~~gl~~SLFeRL~~~-~~~ 344 (1939)
...+++|+|||+.-.+..+ .+-++.. . +...+++|||++|= +-.-.|-+..+|.++... +..
T Consensus 326 ~~~~~~ilVDEfQDTs~~Q~~il~~L~~~~~~~~~~~~~~~lf~VGD~kQS-------IY~FRGA~~~~f~~~~~~~~~~ 398 (910)
T PRK13909 326 DSKISHILIDEFQDTSVLQYKILLPLIDEIKSGEGQKKFRSFFYVGDVKQS-------IYRFRGGKKELFDKVSKDFKQK 398 (910)
T ss_pred hcCCCEEEEECccCCCHHHHHHHHHHHHHhhcccccCCCCeEEEEcCchhh-------hhhhcCCChHHHHHHHHHhhhh
Confidence 3579999999999998763 3344421 1 13579999999993 111123344578777643 224
Q ss_pred cccccccccCChhhhccCcccccC
Q 035724 345 KHLLSIQYRMHPSISSFPNSYFYD 368 (1939)
Q Consensus 345 ~~~L~~QYRmhp~I~~f~S~~FY~ 368 (1939)
...|+++||++|.|.+|.|..|-.
T Consensus 399 ~~~L~~NyRS~~~Iv~~~N~~f~~ 422 (910)
T PRK13909 399 VDNLDTNYRSAPLIVDFVNEVFKK 422 (910)
T ss_pred hcccccCCCCChHHHHHHHHHHHH
Confidence 678999999999999999988743
No 447
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=92.28 E-value=0.25 Score=70.99 Aligned_cols=69 Identities=28% Similarity=0.423 Sum_probs=53.1
Q ss_pred ccCHHHHhhhccC-CcEEEecCCCChHHHHHHHHHHHHhHhhhhhhcccccCCCccccccccccCccCCCCcccccceeE
Q 035724 718 EVTDEQLEMILFP-KSSFILGRSGTGKTTILTMKLFQKEKLHHMAMDGFYGVNNSVTLHSSWESGAEEGLGETERPILRQ 796 (1939)
Q Consensus 718 ~l~~ee~~iI~~p-~~~~vlGrSGTGKTT~~L~kl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~q 796 (1939)
.+|++|+++|... .+++|.+++|||||++++.|+.+. +.+|. ..-+-
T Consensus 1 ~~t~~Q~~ai~~~~~~~lv~A~AGsGKT~~lv~r~~~~------~~~~~--------------------------~~~~i 48 (1232)
T TIGR02785 1 QWTDEQWQAIYTRGQNILVSASAGSGKTAVLVERIIKK------ILRGV--------------------------DIDRL 48 (1232)
T ss_pred CCCHHHHHHHhCCCCCEEEEecCCCcHHHHHHHHHHHH------HhcCC--------------------------CHhhE
Confidence 3699999999974 469999999999999999999887 22220 01137
Q ss_pred EEEecCHHHHHHHHHHHHH-HHh
Q 035724 797 LFVTVSPKLCFAVKQHISQ-MIS 818 (1939)
Q Consensus 797 vfVT~S~~L~~~vk~~~~~-l~~ 818 (1939)
+-||....-+.+.|+-+.+ |.+
T Consensus 49 l~~tFt~~aa~e~~~ri~~~l~~ 71 (1232)
T TIGR02785 49 LVVTFTNAAAREMKERIEEALQK 71 (1232)
T ss_pred EEEeccHHHHHHHHHHHHHHHHH
Confidence 8899999999988877766 443
No 448
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=92.23 E-value=12 Score=47.66 Aligned_cols=88 Identities=11% Similarity=0.045 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChH-HHH-HHHHHHHHcCCHHHHHHHHHHccC--------
Q 035724 1122 VNLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEP-ELE-KAGECFFLAGCYKLAADVYAKGKF-------- 1191 (1939)
Q Consensus 1122 ~~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~-~~~-qaAe~fE~~G~y~eAAelY~kagd-------- 1191 (1939)
..+.-+|+.+...|+++.|.+.+.++-. .. .+.. ..+ ..|+.+...|+++.|.+.+.+.-+
T Consensus 119 ~~~llaA~aa~~~g~~~~A~~~l~~a~~------~~---p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~ 189 (409)
T TIGR00540 119 LNLIKAAEAAQQRGDEARANQHLEEAAE------LA---GNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEV 189 (409)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH------hC---CcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 3456777888888888888777766421 10 1111 122 247888888999988888776522
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhhhhc
Q 035724 1192 FSECLAVCSKGKLFEIGLQYMNHWKQH 1218 (1939)
Q Consensus 1192 ~dkAI~my~k~k~fd~airLv~q~~d~ 1218 (1939)
..-+..+|.+.|+|+++.++++++.+.
T Consensus 190 l~ll~~~~~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 190 LKLAEEAYIRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 234556788899999999998876654
No 449
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=92.22 E-value=0.26 Score=59.13 Aligned_cols=29 Identities=31% Similarity=0.245 Sum_probs=23.7
Q ss_pred CCCcEEEEeCCCCCchhHHHHHHHHHHhc
Q 035724 228 HKATVELIWGPPGTGKTKTVSMLLDFCFT 256 (1939)
Q Consensus 228 ~~~~v~LI~GPPGTGKTtti~~li~~~l~ 256 (1939)
++.++.=|.|+||.||+|++-.++..+..
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~ 77 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRE 77 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHH
Confidence 44667889999999999999999855543
No 450
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=92.09 E-value=0.26 Score=63.92 Aligned_cols=33 Identities=27% Similarity=0.186 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKT 246 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtt 246 (1939)
..+++.|.+|+..++.. .. .++.+|.|||||..
T Consensus 108 ~~~~~iQ~~ai~~~~~G------~d-vi~~apTGSGKTla 140 (475)
T PRK01297 108 PYCTPIQAQVLGYTLAG------HD-AIGRAQTGTGKTAA 140 (475)
T ss_pred CCCCHHHHHHHHHHhCC------CC-EEEECCCCChHHHH
Confidence 35799999999999873 34 47899999999954
No 451
>PRK04841 transcriptional regulator MalT; Provisional
Probab=92.05 E-value=34 Score=48.05 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.4
Q ss_pred CcEEEEeCCCCCchhHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLD 252 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~ 252 (1939)
.++++|+||+|.||||+++..+.
T Consensus 32 ~~~~~v~apaG~GKTtl~~~~~~ 54 (903)
T PRK04841 32 YRLVLVTSPAGYGKTTLISQWAA 54 (903)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999987653
No 452
>PHA00350 putative assembly protein
Probab=92.04 E-value=0.22 Score=62.58 Aligned_cols=32 Identities=16% Similarity=0.204 Sum_probs=24.8
Q ss_pred EEEEeCCCCCchhHHHHH-HHHHHhcCCcEEEE
Q 035724 232 VELIWGPPGTGKTKTVSM-LLDFCFTKASLIFC 263 (1939)
Q Consensus 232 v~LI~GPPGTGKTtti~~-li~~~l~~a~vI~~ 263 (1939)
+.+++|+||+|||..++. .+...++..+.|++
T Consensus 3 I~l~tG~pGSGKT~~aV~~~i~palk~GR~V~T 35 (399)
T PHA00350 3 IYAIVGRPGSYKSYEAVVYHIIPALKDGRKVIT 35 (399)
T ss_pred eEEEecCCCCchhHHHHHHHHHHHHHCCCEEEE
Confidence 689999999999998876 45555666677764
No 453
>PHA00547 hypothetical protein
Probab=92.04 E-value=0.29 Score=57.26 Aligned_cols=62 Identities=19% Similarity=0.163 Sum_probs=37.7
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEE------------cccc--hhhHHhhhccCCcEEEEeCCcccc
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFC------------TASS--SYKLHRVAMEQLKFLVIDEAAQLK 291 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~------------T~ss--s~~l~~l~~~~fdvVIIDEASQ~~ 291 (1939)
+|+++|+||-|||||+.+..++...-..+..+.+ |-.+ -.......+.+-.++.+||++..-
T Consensus 75 spis~i~G~LGsGKTlLMT~LA~~~K~K~~~lYSNY~L~dsKpg~~~F~~~Df~d~~~vap~~sSIillDE~~L~i 150 (337)
T PHA00547 75 NPLSVIIGKLGTGKTLLLTYLSQTMKLLTDEIYSNYPLEDDKVKVLTFKNLDFTDRTKPVPPDDSVILFDESYLYI 150 (337)
T ss_pred CCceEEeccCCCchhHHHHHHHHHHHhhheeeeeccCCCCCCCceeeecccccccccccCCCCCcEEEEEeeeEec
Confidence 7999999999999999998887444333322222 1110 000111123355789999998663
No 454
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=92.04 E-value=0.22 Score=63.19 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=20.4
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHH
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
.-.|+.||||||||+++..+.+.+
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhc
Confidence 357999999999999999887544
No 455
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=92.03 E-value=0.19 Score=65.58 Aligned_cols=45 Identities=29% Similarity=0.378 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHhccc-CCCCCcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 210 NDSQAQAVLSCLRRTH-CDHKATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~~-~~~~~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
+....+-|+..|.... ......+.|+.||||+|||||+..+.+.+
T Consensus 24 hkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 24 HKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred cHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 3445556666666432 22335688999999999999999888665
No 456
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=92.00 E-value=0.21 Score=61.92 Aligned_cols=48 Identities=17% Similarity=0.206 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHHHHhccc-CCCCCcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 207 STLNDSQAQAVLSCLRRTH-CDHKATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~-~~~~~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
.++++...+.|..+-.... ......+.+|.|||||||||++..|.+.+
T Consensus 54 ~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 54 FGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred cCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455565555554433222 12346788999999999999999887554
No 457
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.97 E-value=0.0061 Score=75.32 Aligned_cols=183 Identities=13% Similarity=0.021 Sum_probs=124.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHHHH
Q 035724 1120 ANVNLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKFFSECLAVC 1199 (1939)
Q Consensus 1120 a~~~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd~dkAI~my 1199 (1939)
..+.+-++|.+|+..|.|+.|.-.|.+.++|.+|.++.-......+....|.+.|..+ ..|. .|..+++++.+.+.|
T Consensus 184 v~~qegeta~ltevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~--pval-~fq~~~gni~cyrwy 260 (615)
T KOG2247|consen 184 VTTQEGETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDE--PVAL-QFQEKYGNIHCYRWY 260 (615)
T ss_pred HhhhccceeeeeeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCC--ccce-EeeecCCceeEEEEe
Confidence 4456789999999999999999999999999999988655433445667777777776 4444 899999988888877
Q ss_pred HhcCCh--HHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccHHHHH
Q 035724 1200 SKGKLF--EIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKKSMMKFVKSFRSVDLMR 1277 (1939)
Q Consensus 1200 ~k~k~f--d~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k~A~~~~~~~~s~eeA~ 1277 (1939)
..+..- +++.+ +...+...+++- ++.|.+. |.+.|.+++...+..++|+
T Consensus 261 lDg~i~igf~ag~---------------------iV~iS~h~aeLg-------aeffqkl-dy~~aLqsiavsqcvnkaf 311 (615)
T KOG2247|consen 261 LDGYILIGFDAGY---------------------IVSISAHNAELG-------AEFFQKL-DYRGALQSIAVSQCVNKAF 311 (615)
T ss_pred cccccccccccee---------------------EEEEeccchHHH-------HHHHHHh-hHHhhhHHHHHHHHHHHHH
Confidence 663321 12222 222333334444 4556666 8999999999999999999
Q ss_pred HHHHhhcCHHHHHHHHHhcCCHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHH
Q 035724 1278 KFLKSLSCFDDLLVLEEESGNFMDAANIARLRGDIFLAVDLLQKAGCFKEACNVTLN 1334 (1939)
Q Consensus 1278 ~~L~k~~~ldea~ell~e~G~feEAa~Lak~~Gk~~eAi~my~kAG~~~eA~rva~~ 1334 (1939)
.+-.+++.+.+..++...-++-.+-++.......+-+|.++|..++++-.|...+.+
T Consensus 312 tlgdn~nkvRdl~el~e~y~n~L~eaek~lge~~~t~dgqlyals~Q~g~l~~fLtK 368 (615)
T KOG2247|consen 312 TLGDNMNKVRDLDELTEVYMNTLIEAEKNLGEIEVTEDGQLYALSSQSGVLSIFLTK 368 (615)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhccCceeeeeccceeeehhccchHHHHHHh
Confidence 886655555444443322222222222233335667889999999999999887765
No 458
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=91.94 E-value=8.9 Score=45.65 Aligned_cols=65 Identities=11% Similarity=0.050 Sum_probs=42.8
Q ss_pred cCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHH
Q 035724 1062 ASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAA 1141 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAa 1141 (1939)
..+++++...|..++.+|+|++|+..|++.-.... ............|..|.+.+++++|+
T Consensus 29 ~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP-------------------~s~~a~~a~l~la~ayy~~~~y~~A~ 89 (243)
T PRK10866 29 DNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYP-------------------FGPYSQQVQLDLIYAYYKNADLPLAQ 89 (243)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-------------------CChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 45788999999999999999999999997532110 00111222345566666677777775
Q ss_pred HHHH
Q 035724 1142 KCFY 1145 (1939)
Q Consensus 1142 ecy~ 1145 (1939)
..|.
T Consensus 90 ~~~e 93 (243)
T PRK10866 90 AAID 93 (243)
T ss_pred HHHH
Confidence 5443
No 459
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=91.89 E-value=0.19 Score=57.84 Aligned_cols=36 Identities=31% Similarity=0.392 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHH
Q 035724 210 NDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLL 251 (1939)
Q Consensus 210 N~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li 251 (1939)
.+.-+.|+.-+... .++ .|+.||||||||+++..+.
T Consensus 8 Qe~aKrAL~iAAaG-----~h~-lLl~GppGtGKTmlA~~l~ 43 (206)
T PF01078_consen 8 QEEAKRALEIAAAG-----GHH-LLLIGPPGTGKTMLARRLP 43 (206)
T ss_dssp THHHHHHHHHHHHC-----C---EEEES-CCCTHHHHHHHHH
T ss_pred cHHHHHHHHHHHcC-----CCC-eEEECCCCCCHHHHHHHHH
Confidence 45566777777663 134 4999999999999998887
No 460
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=91.89 E-value=0.33 Score=59.69 Aligned_cols=37 Identities=22% Similarity=0.312 Sum_probs=27.0
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHH-hcCCcEEEEcc
Q 035724 229 KATVELIWGPPGTGKTKTVSMLLDFC-FTKASLIFCTA 265 (1939)
Q Consensus 229 ~~~v~LI~GPPGTGKTtti~~li~~~-l~~a~vI~~T~ 265 (1939)
+..+++|.||||||||+++..++..+ .....+++.++
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~ 91 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDA 91 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcc
Confidence 36799999999999999988777444 33455555443
No 461
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=91.85 E-value=1.4 Score=47.72 Aligned_cols=97 Identities=20% Similarity=0.222 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHH
Q 035724 1065 PEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCF 1144 (1939)
Q Consensus 1065 peeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy 1144 (1939)
..-+..+|..++.+|+|+.|...|.++-+... ++..........|.++...|++++|...+
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~-------------------d~~l~~~a~l~LA~~~~~~~~~d~Al~~L 108 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANAP-------------------DPELKPLARLRLARILLQQGQYDEALATL 108 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC-------------------CHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34567889999999999999999997643111 11111222346778888888888888877
Q ss_pred HHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 035724 1145 YNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKG 1189 (1939)
Q Consensus 1145 ~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~ka 1189 (1939)
.....-.- ......-.|+++...|++++|.+.|.++
T Consensus 109 ~~~~~~~~---------~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 109 QQIPDEAF---------KALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HhccCcch---------HHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 54221110 0122455699999999999999999875
No 462
>PRK14701 reverse gyrase; Provisional
Probab=91.77 E-value=0.43 Score=69.67 Aligned_cols=33 Identities=24% Similarity=0.151 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHH
Q 035724 208 TLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTV 247 (1939)
Q Consensus 208 ~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti 247 (1939)
.+.+-|+.++..++.. .-.++.+|.|||||++.
T Consensus 79 ~pt~iQ~~~i~~il~G-------~d~li~APTGsGKTl~~ 111 (1638)
T PRK14701 79 EFWSIQKTWAKRILRG-------KSFSIVAPTGMGKSTFG 111 (1638)
T ss_pred CCCHHHHHHHHHHHcC-------CCEEEEEcCCCCHHHHH
Confidence 5789999999999984 23489999999999853
No 463
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=91.72 E-value=0.66 Score=58.10 Aligned_cols=94 Identities=15% Similarity=0.181 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 035724 1066 EEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCFY 1145 (1939)
Q Consensus 1066 eeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy~ 1145 (1939)
.++..+|..++..++|+.|+.+|.+|-.. +|. ....|...|..|...|++++|+.++.
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~---------------------~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~ 60 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDL---------------------DPN-NAELYADRAQANIKLGNFTEAVADAN 60 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 46888999999999999999999976320 122 12356677888888899999877754
Q ss_pred HhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 035724 1146 NLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKG 1189 (1939)
Q Consensus 1146 kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~ka 1189 (1939)
+ |.++.-. ....+...|.++...|+|.+|.+.|.++
T Consensus 61 ~------Al~l~P~--~~~a~~~lg~~~~~lg~~~eA~~~~~~a 96 (356)
T PLN03088 61 K------AIELDPS--LAKAYLRKGTACMKLEEYQTAKAALEKG 96 (356)
T ss_pred H------HHHhCcC--CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4 3333111 1123555677777777777777766554
No 464
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=91.65 E-value=0.33 Score=60.95 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=23.1
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHh
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCF 255 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l 255 (1939)
..+.+|.||+|+|||||+.++++.+.
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~ 174 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCG 174 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999987764
No 465
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=91.57 E-value=0.37 Score=59.33 Aligned_cols=49 Identities=20% Similarity=0.198 Sum_probs=31.5
Q ss_pred HHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHH-hcCCcEEEEcc
Q 035724 216 AVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFC-FTKASLIFCTA 265 (1939)
Q Consensus 216 AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~-l~~a~vI~~T~ 265 (1939)
++..+|. ..+-....++.|.||||||||+++..++..+ .....+++.++
T Consensus 42 ~LD~~Lg-~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~ 91 (325)
T cd00983 42 SLDIALG-IGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDA 91 (325)
T ss_pred HHHHHhc-CCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECc
Confidence 4445554 0112236799999999999999998877443 33445555544
No 466
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.56 E-value=0.42 Score=59.76 Aligned_cols=37 Identities=24% Similarity=0.243 Sum_probs=27.4
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHh-cCCcEEEEcc
Q 035724 229 KATVELIWGPPGTGKTKTVSMLLDFCF-TKASLIFCTA 265 (1939)
Q Consensus 229 ~~~v~LI~GPPGTGKTtti~~li~~~l-~~a~vI~~T~ 265 (1939)
++.+.+|.||.|+|||||++.+...+. +..+|.+.|+
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIta 242 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITT 242 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 367889999999999999999985543 3445554443
No 467
>PRK13767 ATP-dependent helicase; Provisional
Probab=91.47 E-value=0.35 Score=67.31 Aligned_cols=34 Identities=29% Similarity=0.303 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHH
Q 035724 207 STLNDSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTV 247 (1939)
Q Consensus 207 ~~LN~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti 247 (1939)
..+++-|.+|+..++.. .-.+|..|.|||||...
T Consensus 31 ~~~tpiQ~~Ai~~il~g-------~nvli~APTGSGKTlaa 64 (876)
T PRK13767 31 GTFTPPQRYAIPLIHEG-------KNVLISSPTGSGKTLAA 64 (876)
T ss_pred CCCCHHHHHHHHHHHcC-------CCEEEECCCCCcHHHHH
Confidence 35899999999998763 23599999999999864
No 468
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=91.45 E-value=0.28 Score=53.30 Aligned_cols=19 Identities=42% Similarity=0.629 Sum_probs=17.7
Q ss_pred EEEeCCCCCchhHHHHHHH
Q 035724 233 ELIWGPPGTGKTKTVSMLL 251 (1939)
Q Consensus 233 ~LI~GPPGTGKTtti~~li 251 (1939)
.||.|-|||||||+...+.
T Consensus 10 ILvtGTPG~GKstl~~~la 28 (176)
T KOG3347|consen 10 ILVTGTPGTGKSTLAERLA 28 (176)
T ss_pred EEEeCCCCCCchhHHHHHH
Confidence 4999999999999999887
No 469
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=91.45 E-value=0.23 Score=55.70 Aligned_cols=87 Identities=17% Similarity=0.158 Sum_probs=48.2
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHhc-CCcEEEEcccc--hhhH--------------------HhhhccCCcEEEEeC
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCFT-KASLIFCTASS--SYKL--------------------HRVAMEQLKFLVIDE 286 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l~-~a~vI~~T~ss--s~~l--------------------~~l~~~~fdvVIIDE 286 (1939)
+...+|+|+|||||+.++..|=....+ +...|...|++ .-.. -.+....--++++||
T Consensus 22 ~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~ 101 (168)
T PF00158_consen 22 DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANGGTLFLDE 101 (168)
T ss_dssp TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTSEEEEET
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccceEEeecc
Confidence 355699999999999999888654432 23333322221 1111 011223457999999
Q ss_pred CcccchH--HhhccccCCCcceEEEEeccccCCc
Q 035724 287 AAQLKEV--ESAIPLKLPGIQHAILIGDECQLPA 318 (1939)
Q Consensus 287 ASQ~~E~--e~lipL~~~~~~rlVLiGD~~QLpP 318 (1939)
...++.. ..++-+. ....+.-+|+.+..+.
T Consensus 102 I~~L~~~~Q~~Ll~~l--~~~~~~~~g~~~~~~~ 133 (168)
T PF00158_consen 102 IEDLPPELQAKLLRVL--EEGKFTRLGSDKPVPV 133 (168)
T ss_dssp GGGS-HHHHHHHHHHH--HHSEEECCTSSSEEE-
T ss_pred hhhhHHHHHHHHHHHH--hhchhccccccccccc
Confidence 9999876 2222222 1245666787765554
No 470
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.42 E-value=0.19 Score=63.31 Aligned_cols=81 Identities=25% Similarity=0.286 Sum_probs=46.8
Q ss_pred EEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccch---------hhHHh----hhccCCcEEEEeCCcccchH------
Q 035724 233 ELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASSS---------YKLHR----VAMEQLKFLVIDEAAQLKEV------ 293 (1939)
Q Consensus 233 ~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~sss---------~~l~~----l~~~~fdvVIIDEASQ~~E~------ 293 (1939)
.|+.||||||||.++.+++..+.. ...-.++++- ...+. -+...+.+++|||+-.+...
T Consensus 189 lLLfGPpgtGKtmL~~aiAsE~~a--tff~iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~ 266 (428)
T KOG0740|consen 189 LLLFGPPGTGKTMLAKAIATESGA--TFFNISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEH 266 (428)
T ss_pred hheecCCCCchHHHHHHHHhhhcc--eEeeccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCccc
Confidence 489999999999999888743321 1111111110 11111 14578999999998655221
Q ss_pred --------Hhhcccc---CCCcceEEEEecccc
Q 035724 294 --------ESAIPLK---LPGIQHAILIGDECQ 315 (1939)
Q Consensus 294 --------e~lipL~---~~~~~rlVLiGD~~Q 315 (1939)
+.+++.. ..+..+++++|-..+
T Consensus 267 e~srr~ktefLiq~~~~~s~~~drvlvigaTN~ 299 (428)
T KOG0740|consen 267 ESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNR 299 (428)
T ss_pred ccchhhhhHHHhhhccccCCCCCeEEEEecCCC
Confidence 3444432 224458888886554
No 471
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=91.40 E-value=1 Score=51.79 Aligned_cols=99 Identities=16% Similarity=0.244 Sum_probs=62.3
Q ss_pred cCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCC--HHH
Q 035724 1062 ASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGK--ADS 1139 (1939)
Q Consensus 1062 ~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~--~~k 1139 (1939)
..+++-|..+|..+...++++.|+.+|.+|-.. +|......+.-|.-+|...|+ +++
T Consensus 70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l---------------------~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQL---------------------RGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------------------CCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 477889999999999999999999999987431 122222222233335666666 467
Q ss_pred HHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 035724 1140 AAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKG 1189 (1939)
Q Consensus 1140 Aaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~ka 1189 (1939)
|.+++.++-..+- .....+-..|..+.+.|+|++|...|.++
T Consensus 129 A~~~l~~al~~dP--------~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 129 TREMIDKALALDA--------NEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHHhCC--------CChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7666654431110 01122444566777778888888877765
No 472
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=91.39 E-value=0.22 Score=59.51 Aligned_cols=37 Identities=24% Similarity=0.206 Sum_probs=28.5
Q ss_pred CcEEEEeCCCCCchhHHHHHHHH-HHhcCCcEEEEccc
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLD-FCFTKASLIFCTAS 266 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~-~~l~~a~vI~~T~s 266 (1939)
..+++|.||||||||++...++. .+.+.-++++.++-
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 57899999999999999988764 44455577666543
No 473
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=91.35 E-value=0.28 Score=65.91 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=19.5
Q ss_pred EEEEeCCCCCchhHHHHHHHHHH
Q 035724 232 VELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 232 v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
-.||.||||||||+++..+...+
T Consensus 27 ~vli~G~~GtgKs~lar~l~~~l 49 (633)
T TIGR02442 27 GVLIRGEKGTAKSTAARGLAALL 49 (633)
T ss_pred eEEEEcCCCCcHHHHHHHHHHhC
Confidence 36999999999999998886544
No 474
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=91.34 E-value=0.63 Score=50.89 Aligned_cols=64 Identities=22% Similarity=0.248 Sum_probs=47.1
Q ss_pred CHHHHhhhcc---CCcEEEecCCCChHHHHHHHHHHHHhHhhhhhhcccccCCCccccccccccCccCCCCcccccceeE
Q 035724 720 TDEQLEMILF---PKSSFILGRSGTGKTTILTMKLFQKEKLHHMAMDGFYGVNNSVTLHSSWESGAEEGLGETERPILRQ 796 (1939)
Q Consensus 720 ~~ee~~iI~~---p~~~~vlGrSGTGKTT~~L~kl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~q 796 (1939)
||.|++++.. ..+.+|.|..|+|||++++.-++.. +.++ ..-..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~------~~~~---------------------------~~~~~ 47 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNR------LQEG---------------------------KDARV 47 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHH------HHTT---------------------------SSSEE
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhh------hccC---------------------------CCceE
Confidence 6888888874 5779999999999999999988876 1111 00158
Q ss_pred EEEecCHHHHHHHHHHHHHH
Q 035724 797 LFVTVSPKLCFAVKQHISQM 816 (1939)
Q Consensus 797 vfVT~S~~L~~~vk~~~~~l 816 (1939)
+++.-...|+.+..+.+.++
T Consensus 48 lii~P~~~l~~q~~~~~~~~ 67 (169)
T PF00270_consen 48 LIIVPTRALAEQQFERLRKF 67 (169)
T ss_dssp EEEESSHHHHHHHHHHHHHH
T ss_pred EEEeeccccccccccccccc
Confidence 88888888988886655553
No 475
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=91.33 E-value=0.61 Score=47.43 Aligned_cols=100 Identities=18% Similarity=0.136 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHH
Q 035724 1065 PEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCF 1144 (1939)
Q Consensus 1065 peeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy 1144 (1939)
++.+...|..++.+++|++|++.|.++-.. . ..++. ....+...+..|.+.|+++.|.++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~----------~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 62 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKK--------Y----------PKSTY-APNAHYWLGEAYYAQGKYADAAKAF 62 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------C----------CCccc-cHHHHHHHHHHHHhhccHHHHHHHH
Confidence 567889999999999999999999876210 0 00011 1123456788888888888888877
Q ss_pred HHhCCHHHHHHHHHHhc-ChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 035724 1145 YNLGEYERAGRIYLERR-EEPELEKAGECFFLAGCYKLAADVYAKG 1189 (1939)
Q Consensus 1145 ~kag~~~~A~eLY~e~~-~e~~~~qaAe~fE~~G~y~eAAelY~ka 1189 (1939)
.++-. .+-... ....+...|.++.+.|++.+|.++|.++
T Consensus 63 ~~~~~------~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 63 LAVVK------KYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQV 102 (119)
T ss_pred HHHHH------HCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 65431 110000 0112445567777777777777776543
No 476
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=91.28 E-value=0.32 Score=66.17 Aligned_cols=24 Identities=29% Similarity=0.239 Sum_probs=20.0
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
+++ |+.||||||||+++..+...+
T Consensus 208 ~n~-LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 208 NNP-LLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred CCe-EEECCCCCCHHHHHHHHHHHH
Confidence 344 889999999999999888654
No 477
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=91.26 E-value=0.16 Score=52.87 Aligned_cols=21 Identities=38% Similarity=0.426 Sum_probs=18.9
Q ss_pred EEeCCCCCchhHHHHHHHHHH
Q 035724 234 LIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 234 LI~GPPGTGKTtti~~li~~~ 254 (1939)
+|.|+|||||||++..|.+.+
T Consensus 2 ~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 2 GISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEESTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 789999999999999998664
No 478
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=91.26 E-value=0.31 Score=63.84 Aligned_cols=62 Identities=31% Similarity=0.345 Sum_probs=40.2
Q ss_pred CCCcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEcccc-------------hhhHHhh--hccCCcEEEEeCCcccc
Q 035724 228 HKATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTASS-------------SYKLHRV--AMEQLKFLVIDEAAQLK 291 (1939)
Q Consensus 228 ~~~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~ss-------------s~~l~~l--~~~~fdvVIIDEASQ~~ 291 (1939)
....+.|++||||-||||++..+++.+- .+||=.-++. +.+.+.. ....+..+||||.-=.+
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaG--YsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAG--YSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP 400 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcC--ceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCc
Confidence 3467899999999999999988876653 3333322211 1112222 22578899999987665
No 479
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=91.25 E-value=0.51 Score=57.93 Aligned_cols=41 Identities=20% Similarity=0.174 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHHHhcCCc
Q 035724 213 QAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDFCFTKAS 259 (1939)
Q Consensus 213 Q~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~a~ 259 (1939)
+.+.+..++.. ....+|.||+|+||||++..++..+-...+
T Consensus 133 ~~~~l~~~v~~------~~~ili~G~tGsGKTTll~al~~~~~~~~~ 173 (308)
T TIGR02788 133 IKEFLRLAIAS------RKNIIISGGTGSGKTTFLKSLVDEIPKDER 173 (308)
T ss_pred HHHHHHHHhhC------CCEEEEECCCCCCHHHHHHHHHccCCcccc
Confidence 34445555552 456799999999999999998855433333
No 480
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.23 E-value=0.85 Score=54.76 Aligned_cols=113 Identities=20% Similarity=0.323 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHHH
Q 035724 1065 PEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKCF 1144 (1939)
Q Consensus 1065 peeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaecy 1144 (1939)
.+..+.+|..+++.++|++|+.+|.+|=. + +|.. -.+|-.-|..|.+.|+++.|++=-
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~-----------l----------~P~n-AVyycNRAAAy~~Lg~~~~AVkDc 138 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIE-----------L----------DPTN-AVYYCNRAAAYSKLGEYEDAVKDC 138 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHh-----------c----------CCCc-chHHHHHHHHHHHhcchHHHHHHH
Confidence 35779999999999999999999997621 1 2332 335555566677777777664322
Q ss_pred HHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHHHHHhcCChHHHHHHHH
Q 035724 1145 YNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKFFSECLAVCSKGKLFEIGLQYMN 1213 (1939)
Q Consensus 1145 ~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd~dkAI~my~k~k~fd~airLv~ 1213 (1939)
.++-.++-- | ...|-+-|..|...|+|.+|++.|.|+=++ .-.+.-|..-+++++
T Consensus 139 e~Al~iDp~---y-----skay~RLG~A~~~~gk~~~A~~aykKaLel------dP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 139 ESALSIDPH---Y-----SKAYGRLGLAYLALGKYEEAIEAYKKALEL------DPDNESYKSNLKIAE 193 (304)
T ss_pred HHHHhcChH---H-----HHHHHHHHHHHHccCcHHHHHHHHHhhhcc------CCCcHHHHHHHHHHH
Confidence 222111100 0 124778899999999999999998877443 222233444555555
No 481
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=91.09 E-value=0.59 Score=43.58 Aligned_cols=62 Identities=23% Similarity=0.382 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcC-CHHHHHH
Q 035724 1064 SPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIG-KADSAAK 1142 (1939)
Q Consensus 1064 tpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G-~~~kAae 1142 (1939)
+++.|..+|..++..++|++|+.+|.+|=+. +|. ....|...+..|...| ++++|++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~---------------------~p~-~~~~~~~~g~~~~~~~~~~~~A~~ 59 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL---------------------DPN-NAEAYYNLGLAYMKLGKDYEEAIE 59 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH---------------------STT-HHHHHHHHHHHHHHTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------------------CCC-CHHHHHHHHHHHHHhCccHHHHHH
Confidence 4778999999999999999999999987321 122 2335667778888888 6888887
Q ss_pred HHHHh
Q 035724 1143 CFYNL 1147 (1939)
Q Consensus 1143 cy~ka 1147 (1939)
+|.++
T Consensus 60 ~~~~a 64 (69)
T PF13414_consen 60 DFEKA 64 (69)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 482
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=91.04 E-value=7.9 Score=50.66 Aligned_cols=131 Identities=15% Similarity=0.131 Sum_probs=68.0
Q ss_pred hhhcCCHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHH-------HHHHhh--hH----Hhhhhhh-c--CCchH-hH
Q 035724 1059 MQVASSPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEG-------RSKATG--LK----ATADRCR-S--SNPKQ-AN 1121 (1939)
Q Consensus 1059 l~v~StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~-------l~kA~~--l~----e~a~~~~-s--~~~~e-a~ 1121 (1939)
.++++--..|-..|.-+...++.+.|...|++|-...+.. |+.-.. ++ +.+-.+. . .-|.. ..
T Consensus 381 ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~ 460 (835)
T KOG2047|consen 381 KAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPEL 460 (835)
T ss_pred cCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhh
Confidence 3457777788888888888888888888888885522221 111110 00 0000000 0 00000 00
Q ss_pred HHHH----HHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHh-----cChHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 035724 1122 VNLR----EAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLER-----REEPELEKAGECFFLAGCYKLAADVYAKG 1189 (1939)
Q Consensus 1122 ~~y~----eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~-----~~e~~~~qaAe~fE~~G~y~eAAelY~ka 1189 (1939)
..|. --+++|.+..-...=+.+-...|-++.....|... +..+.....|-.+|...-|.+|-+.|+++
T Consensus 461 ~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErg 537 (835)
T KOG2047|consen 461 EYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERG 537 (835)
T ss_pred hhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcC
Confidence 0000 01111111111111122223344555555555433 56677889999999999999999999998
No 483
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=90.99 E-value=0.47 Score=59.89 Aligned_cols=83 Identities=20% Similarity=0.258 Sum_probs=51.5
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHhc---CCcEEEEcccchhhHH------------hhhccCCcEEEEeCCcccch--
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCFT---KASLIFCTASSSYKLH------------RVAMEQLKFLVIDEAAQLKE-- 292 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l~---~a~vI~~T~sss~~l~------------~l~~~~fdvVIIDEASQ~~E-- 292 (1939)
.++.+|+||.|.|||+++.++...... +++++..|......-. .-.- ..|+++||.+--+..
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y-~~dlllIDDiq~l~gk~ 191 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY-SLDLLLIDDIQFLAGKE 191 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh-ccCeeeechHhHhcCCh
Confidence 456699999999999999988855543 4567776654321100 0112 689999998765432
Q ss_pred ---HHhhccc--cCCCcceEEEEecc
Q 035724 293 ---VESAIPL--KLPGIQHAILIGDE 313 (1939)
Q Consensus 293 ---~e~lipL--~~~~~~rlVLiGD~ 313 (1939)
.+..-.+ .....+++|+.+|.
T Consensus 192 ~~qeefFh~FN~l~~~~kqIvltsdr 217 (408)
T COG0593 192 RTQEEFFHTFNALLENGKQIVLTSDR 217 (408)
T ss_pred hHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 2222222 12245689999973
No 484
>PRK11189 lipoprotein NlpI; Provisional
Probab=90.99 E-value=12 Score=45.61 Aligned_cols=89 Identities=12% Similarity=0.083 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHccC----HHHH-
Q 035724 1121 NVNLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGKF----FSEC- 1195 (1939)
Q Consensus 1121 ~~~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kagd----~dkA- 1195 (1939)
...|.+.+.+|.+.|++++|...|.++ .++.- -....+...|..+...|+|++|.+.|.++=+ +..+
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~A------l~l~P--~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~ 135 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQA------LALRP--DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAY 135 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH------HHcCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 345677788899999999997765544 33310 1123467789999999999999999999822 2222
Q ss_pred ---HHHHHhcCChHHHHHHHHhhhh
Q 035724 1196 ---LAVCSKGKLFEIGLQYMNHWKQ 1217 (1939)
Q Consensus 1196 ---I~my~k~k~fd~airLv~q~~d 1217 (1939)
..++...+.+++|++.+++.-+
T Consensus 136 ~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 136 LNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2345678899999998886444
No 485
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=90.95 E-value=0.24 Score=53.36 Aligned_cols=63 Identities=21% Similarity=0.210 Sum_probs=36.1
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHHhcCCcE-EEEcccchhhHHhhhccCCcEEEEeCCcccchH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFCFTKASL-IFCTASSSYKLHRVAMEQLKFLVIDEAAQLKEV 293 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~l~~a~v-I~~T~sss~~l~~l~~~~fdvVIIDEASQ~~E~ 293 (1939)
+...+|+|+|||||++++..+-......... +...+.. .....+....-.+++|+|...++..
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~-~~~~~l~~a~~gtL~l~~i~~L~~~ 84 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCAS-LPAELLEQAKGGTLYLKNIDRLSPE 84 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHC-TCHHHHHHCTTSEEEEECGCCS-HH
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhh-CcHHHHHHcCCCEEEECChHHCCHH
Confidence 3456999999999999887665433322222 1111111 1111223345678999999999876
No 486
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=90.92 E-value=0.32 Score=54.68 Aligned_cols=62 Identities=26% Similarity=0.346 Sum_probs=39.2
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHHh-cCCcEEEE---cccch--------hhHHh-----hhccCCcEEEEeCCcccch
Q 035724 231 TVELIWGPPGTGKTKTVSMLLDFCF-TKASLIFC---TASSS--------YKLHR-----VAMEQLKFLVIDEAAQLKE 292 (1939)
Q Consensus 231 ~v~LI~GPPGTGKTtti~~li~~~l-~~a~vI~~---T~sss--------~~l~~-----l~~~~fdvVIIDEASQ~~E 292 (1939)
...++.||+|+|||.++..+.+.+. ....-++. +.-+. ..+.. ......-+|++||.-.+..
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~ 82 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHP 82 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhccc
Confidence 4579999999999999999998887 44443332 11111 11111 0112234999999888776
No 487
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.89 E-value=9 Score=51.87 Aligned_cols=247 Identities=17% Similarity=0.131 Sum_probs=121.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHc-cCHHHHHHHHHhcC
Q 035724 1125 REAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKG-KFFSECLAVCSKGK 1203 (1939)
Q Consensus 1125 ~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~ka-gd~dkAI~my~k~k 1203 (1939)
+.+=+.|.+-|+|++|.++-... -++.++ .+.+.|+++...+.|..||++|.+. .-|+...--....+
T Consensus 362 R~vWk~yLd~g~y~kAL~~ar~~---p~~le~--------Vl~~qAdf~f~~k~y~~AA~~yA~t~~~FEEVaLKFl~~~ 430 (911)
T KOG2034|consen 362 RDVWKTYLDKGEFDKALEIARTR---PDALET--------VLLKQADFLFQDKEYLRAAEIYAETLSSFEEVALKFLEIN 430 (911)
T ss_pred HHHHHHHHhcchHHHHHHhccCC---HHHHHH--------HHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHhcC
Confidence 56778888888888887664333 344443 4667899999999999999999986 33555555555566
Q ss_pred ChHHHHHHHHhhhhcccccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHhcCCHH----HHHHHHH-HhccH---HH
Q 035724 1204 LFEIGLQYMNHWKQHADTDVEHAGTDVGLLVRSMEINKIEQEFLEKCAIHYYGLQDKK----SMMKFVK-SFRSV---DL 1275 (1939)
Q Consensus 1204 ~fd~airLv~q~~d~l~~~~~~~~~~~~l~~~~~~~~~ie~~~le~aa~hy~kagD~k----~A~~~~~-~~~s~---ee 1275 (1939)
+.+...-++.+=-+.+..+ .+ -+...+..-.+ .....++|+.+ .+..-.+ ..+.. -.
T Consensus 431 ~~~~L~~~L~KKL~~lt~~-----------dk-~q~~~Lv~WLl---el~L~~Ln~l~~~de~~~en~~~~~~~~~re~~ 495 (911)
T KOG2034|consen 431 QERALRTFLDKKLDRLTPE-----------DK-TQRDALVTWLL---ELYLEQLNDLDSTDEEALENWRLEYDEVQREFS 495 (911)
T ss_pred CHHHHHHHHHHHHhhCChH-----------HH-HHHHHHHHHHH---HHHHHHHhcccccChhHHHHHHHHHHHHHHHHH
Confidence 6553222332111111100 00 00011111111 11122222221 1111111 00000 00
Q ss_pred HHHH-HHhhcCHHHHHHHHHhcCCHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHHh------------------
Q 035724 1276 MRKF-LKSLSCFDDLLVLEEESGNFMDAANIARLRGDIFLAVDLLQKAGCFKEACNVTLNHV------------------ 1336 (1939)
Q Consensus 1276 A~~~-L~k~~~ldea~ell~e~G~feEAa~Lak~~Gk~~eAi~my~kAG~~~eA~rva~~~~------------------ 1336 (1939)
.+.. ....-.-+.+.+++...|+.+++...|...++++.-+..+.+.|.|.+|..++..+.
T Consensus 496 ~~~~~~~~~~nretv~~l~~~~~~~e~ll~fA~l~~d~~~vv~~~~q~e~yeeaLevL~~~~~~el~yk~ap~Li~~~p~ 575 (911)
T KOG2034|consen 496 KFLVLHKDELNRETVYQLLASHGRQEELLQFANLIKDYEFVVSYWIQQENYEEALEVLLNQRNPELFYKYAPELITHSPK 575 (911)
T ss_pred HHHHhhHHhhhHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHhhhHHHhcCcH
Confidence 0000 111122344456667777777777777777777777777777777777777766541
Q ss_pred -hhhccccCCCCCCCCcchhhHHHHHHHHHhHhhhhhHHHHHHH--hhhhhccccCCCCHHHHHHHHhh
Q 035724 1337 -ISNSLWSPGSKGWPLKQFTKKKELLEKAKSLAKNESNQFYEFV--CTEADILSNDQSDLSIINQQLNA 1402 (1939)
Q Consensus 1337 -~~~~l~~~~~~~~~~~~~~~ae~ll~~A~~~~~~~s~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~ 1402 (1939)
..+.+.++... .|++...-.-.+..+-+. ....++=|-|+ | +..|-....++-.+--+|-.
T Consensus 576 ~tV~~wm~~~d~-~~~~li~~~L~~~~~~~~--~~~~~~~i~yl~f~--~~~l~~~~~~ihn~ll~lya 639 (911)
T KOG2034|consen 576 ETVSAWMAQKDL-DPNRLIPPILSYFSNWHS--EYEENQAIRYLEFC--IEVLGMTNPAIHNSLLHLYA 639 (911)
T ss_pred HHHHHHHHcccc-CchhhhHHHHHHHhcCCc--cccHHHHHHHHHHH--HHhccCcCHHHHHHHHHHhh
Confidence 33444444433 333334444444444443 44445544444 5 34444444433333333333
No 488
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=90.89 E-value=69 Score=42.61 Aligned_cols=31 Identities=26% Similarity=0.464 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHHhhCHHHHHHHHHHhCC
Q 035724 1063 SSPEEWKSRGIKLFHEHNYDMATICFEKAKD 1093 (1939)
Q Consensus 1063 StpeeW~~lG~~l~~q~~yd~A~kcF~rAgd 1093 (1939)
-++-=|-..|..+=..+.|++|++||+.|-.
T Consensus 73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~ 103 (700)
T KOG1156|consen 73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALK 103 (700)
T ss_pred ccchhHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 3556799999999999999999999999843
No 489
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=90.86 E-value=0.13 Score=53.39 Aligned_cols=17 Identities=35% Similarity=0.565 Sum_probs=14.8
Q ss_pred EEEecCCCChHHHHHHH
Q 035724 733 SFILGRSGTGKTTILTM 749 (1939)
Q Consensus 733 ~~vlGrSGTGKTT~~L~ 749 (1939)
++|.|.||+||||+|-.
T Consensus 2 I~I~G~~gsGKST~a~~ 18 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKE 18 (121)
T ss_dssp EEEEESTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 58999999999999843
No 490
>PRK09354 recA recombinase A; Provisional
Probab=90.80 E-value=0.52 Score=58.55 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=26.9
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHH-hcCCcEEEEcc
Q 035724 229 KATVELIWGPPGTGKTKTVSMLLDFC-FTKASLIFCTA 265 (1939)
Q Consensus 229 ~~~v~LI~GPPGTGKTtti~~li~~~-l~~a~vI~~T~ 265 (1939)
...++.|.||||||||++...++... .....+++.++
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~ 96 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDA 96 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECC
Confidence 36799999999999999998877443 33445555443
No 491
>PRK04328 hypothetical protein; Provisional
Probab=90.77 E-value=0.42 Score=56.81 Aligned_cols=36 Identities=25% Similarity=0.254 Sum_probs=27.9
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHH-HhcCCcEEEEcc
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDF-CFTKASLIFCTA 265 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~-~l~~a~vI~~T~ 265 (1939)
..+.+|.||||||||++...++.. +.+...++..|+
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 678999999999999999887744 555566666554
No 492
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=90.72 E-value=0.23 Score=66.36 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=21.6
Q ss_pred CcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 230 ATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 230 ~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
+++.+|..|=||||||.+...++..
T Consensus 49 ~~V~vVRSpMGTGKTtaLi~wLk~~ 73 (824)
T PF02399_consen 49 RGVLVVRSPMGTGKTTALIRWLKDA 73 (824)
T ss_pred CCeEEEECCCCCCcHHHHHHHHHHh
Confidence 6899999999999999887777554
No 493
>PRK11823 DNA repair protein RadA; Provisional
Probab=90.71 E-value=0.46 Score=61.22 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=28.2
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHHh-cCCcEEEEcc
Q 035724 229 KATVELIWGPPGTGKTKTVSMLLDFCF-TKASLIFCTA 265 (1939)
Q Consensus 229 ~~~v~LI~GPPGTGKTtti~~li~~~l-~~a~vI~~T~ 265 (1939)
...+++|.||||+|||+++..++.... +..+++..++
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~ 116 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSG 116 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 357899999999999999988875543 3456666554
No 494
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=90.50 E-value=0.16 Score=52.44 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=17.9
Q ss_pred CcEEEecCCCChHHHHHHHHHHH
Q 035724 731 KSSFILGRSGTGKTTILTMKLFQ 753 (1939)
Q Consensus 731 ~~~~vlGrSGTGKTT~~L~kl~~ 753 (1939)
..++|.|.+||||||++..=...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~ 25 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE 25 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc
Confidence 45789999999999988543333
No 495
>PRK04841 transcriptional regulator MalT; Provisional
Probab=90.50 E-value=15 Score=51.56 Aligned_cols=90 Identities=14% Similarity=0.042 Sum_probs=61.8
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHhcChHHHHHHHHHHHHcCCHHHHHHHHHHcc------
Q 035724 1117 PKQANVNLREAAKIFEAIGKADSAAKCFYNLGEYERAGRIYLERREEPELEKAGECFFLAGCYKLAADVYAKGK------ 1190 (1939)
Q Consensus 1117 ~~ea~~~y~eAA~lYe~~G~~~kAaecy~kag~~~~A~eLY~e~~~e~~~~qaAe~fE~~G~y~eAAelY~kag------ 1190 (1939)
+.+....+..||..|...|++..|+..+..++++..+.++... .|......|.+..+.++.....
T Consensus 337 ~~~~~~lh~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~---------~a~~l~~~g~~~~l~~~l~~lp~~~~~~ 407 (903)
T PRK04841 337 AQELPELHRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQ---------HGWSLFNQGELSLLEECLNALPWEVLLE 407 (903)
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHH---------hHHHHHhcCChHHHHHHHHhCCHHHHhc
Confidence 4445667889999999999999999999999999888776433 3445555677766666655442
Q ss_pred CHH---HHHHHHHhcCChHHHHHHHHhh
Q 035724 1191 FFS---ECLAVCSKGKLFEIGLQYMNHW 1215 (1939)
Q Consensus 1191 d~d---kAI~my~k~k~fd~airLv~q~ 1215 (1939)
+.. ....++...++++++.+++++.
T Consensus 408 ~~~l~~~~a~~~~~~g~~~~a~~~l~~a 435 (903)
T PRK04841 408 NPRLVLLQAWLAQSQHRYSEVNTLLARA 435 (903)
T ss_pred CcchHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 111 1122445667788888777753
No 496
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=90.48 E-value=0.46 Score=58.81 Aligned_cols=55 Identities=22% Similarity=0.192 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhccc-CCCCCcEEEEeCCCCCchhHHHHHHHHHHhcCCcEEEEccc
Q 035724 212 SQAQAVLSCLRRTH-CDHKATVELIWGPPGTGKTKTVSMLLDFCFTKASLIFCTAS 266 (1939)
Q Consensus 212 sQ~~AV~~~L~~~~-~~~~~~v~LI~GPPGTGKTtti~~li~~~l~~a~vI~~T~s 266 (1939)
..++|.--++.... .+-.....||.||||||||.++..+.+.+-.....+..+++
T Consensus 31 ~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgS 86 (398)
T PF06068_consen 31 KAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGS 86 (398)
T ss_dssp HHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGG
T ss_pred HHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccc
Confidence 45666655555332 22235677999999999999999999888766665554443
No 497
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=90.46 E-value=0.34 Score=56.35 Aligned_cols=38 Identities=29% Similarity=0.504 Sum_probs=29.0
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHH-hcCCcEEEEccc
Q 035724 229 KATVELIWGPPGTGKTKTVSMLLDFC-FTKASLIFCTAS 266 (1939)
Q Consensus 229 ~~~v~LI~GPPGTGKTtti~~li~~~-l~~a~vI~~T~s 266 (1939)
...+++|.||||||||+++..++..+ ..+.++++.++.
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 35799999999999999998888544 344566666554
No 498
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.46 E-value=0.45 Score=60.56 Aligned_cols=26 Identities=35% Similarity=0.471 Sum_probs=22.1
Q ss_pred CCcEEEEeCCCCCchhHHHHHHHHHH
Q 035724 229 KATVELIWGPPGTGKTKTVSMLLDFC 254 (1939)
Q Consensus 229 ~~~v~LI~GPPGTGKTtti~~li~~~ 254 (1939)
...+..+.||+|+|||||+..|...+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35688999999999999999888543
No 499
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.41 E-value=49 Score=40.10 Aligned_cols=273 Identities=16% Similarity=0.186 Sum_probs=141.0
Q ss_pred CHHHHHHHHHHHHHhhCHHHHHHHHHHhCCcchHHHHHHhhhHHhhhhhhcCCchHhHHHHHHHHHHHHHcCCHHHHHHH
Q 035724 1064 SPEEWKSRGIKLFHEHNYDMATICFEKAKDSYWEGRSKATGLKATADRCRSSNPKQANVNLREAAKIFEAIGKADSAAKC 1143 (1939)
Q Consensus 1064 tpeeW~~lG~~l~~q~~yd~A~kcF~rAgd~~~~~l~kA~~l~e~a~~~~s~~~~ea~~~y~eAA~lYe~~G~~~kAaec 1143 (1939)
+..-..-+|.-++..+.|..|..||+..+... |+..+-.+..|-.+|. ++.+..|.+.
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~---------------------P~~~qYrlY~AQSLY~-A~i~ADALrV 100 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH---------------------PELEQYRLYQAQSLYK-ACIYADALRV 100 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---------------------hHHHHHHHHHHHHHHH-hcccHHHHHH
Confidence 55666778888899999999999999866411 2222223333333332 3344444444
Q ss_pred HHHhCC---------------------HHHHHHHHHHhcChH---HHHHHHHHHHHcCCHHHHHHHHHHccCH-------
Q 035724 1144 FYNLGE---------------------YERAGRIYLERREEP---ELEKAGECFFLAGCYKLAADVYAKGKFF------- 1192 (1939)
Q Consensus 1144 y~kag~---------------------~~~A~eLY~e~~~e~---~~~qaAe~fE~~G~y~eAAelY~kagd~------- 1192 (1939)
....++ +--+..+..+..+++ ....-|=...+.|+|.+|.+-|..+-++
T Consensus 101 ~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpll 180 (459)
T KOG4340|consen 101 AFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLL 180 (459)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchh
Confidence 444443 222222222221111 1334455677889999999888776432
Q ss_pred --HHHHHHHHhcCChHHHHHHHH--------hhhhcccccccccccchhh-------hhhhhhHhHHHHHHHHHHHHHHH
Q 035724 1193 --SECLAVCSKGKLFEIGLQYMN--------HWKQHADTDVEHAGTDVGL-------LVRSMEINKIEQEFLEKCAIHYY 1255 (1939)
Q Consensus 1193 --dkAI~my~k~k~fd~airLv~--------q~~d~l~~~~~~~~~~~~l-------~~~~~~~~~ie~~~le~aa~hy~ 1255 (1939)
.-|+ +..+.++++.|+.++. +||+. +++-+..++ ....+....++..-+ + +.-+.
T Consensus 181 AYniAL-aHy~~~qyasALk~iSEIieRG~r~HPEl-----gIGm~tegiDvrsvgNt~~lh~Sal~eAfNL-K-aAIey 252 (459)
T KOG4340|consen 181 AYNLAL-AHYSSRQYASALKHISEIIERGIRQHPEL-----GIGMTTEGIDVRSVGNTLVLHQSALVEAFNL-K-AAIEY 252 (459)
T ss_pred HHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCcc-----CccceeccCchhcccchHHHHHHHHHHHhhh-h-hhhhh
Confidence 2233 3345678888887765 33331 111111111 111122222221122 2 34466
Q ss_pred hcCCHHHHHHHHHHhccHH-------------------------HHHHHHHhhc-C----HHHHHHHHHhcCCHHHHHHH
Q 035724 1256 GLQDKKSMMKFVKSFRSVD-------------------------LMRKFLKSLS-C----FDDLLVLEEESGNFMDAANI 1305 (1939)
Q Consensus 1256 kagD~k~A~~~~~~~~s~e-------------------------eA~~~L~k~~-~----ldea~ell~e~G~feEAa~L 1305 (1939)
+.++.++|.+++-...... ....||...+ + +..+.-++|+..-|+-|+.+
T Consensus 253 q~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADv 332 (459)
T KOG4340|consen 253 QLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADV 332 (459)
T ss_pred hcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHH
Confidence 7788888887664211111 1223322111 1 12222344555555555443
Q ss_pred HHHc-----------------------------------------CCH-HHHHHHH-HHhCCHHHHHHHHHH-H-----h
Q 035724 1306 ARLR-----------------------------------------GDI-FLAVDLL-QKAGCFKEACNVTLN-H-----V 1336 (1939)
Q Consensus 1306 ak~~-----------------------------------------Gk~-~eAi~my-~kAG~~~eA~rva~~-~-----~ 1336 (1939)
.-.+ |+. ..|++.- .++.+-+.|+|-+.. | +
T Consensus 333 LAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~ 412 (459)
T KOG4340|consen 333 LAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEK 412 (459)
T ss_pred HhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 2211 111 1233333 224444566654443 3 4
Q ss_pred hhhccccCCCCCCCCcchhhHHHHHHHHHh
Q 035724 1337 ISNSLWSPGSKGWPLKQFTKKKELLEKAKS 1366 (1939)
Q Consensus 1337 ~~~~l~~~~~~~~~~~~~~~ae~ll~~A~~ 1366 (1939)
..-|+.++|.-.|..+||.-+|.+|-++-.
T Consensus 413 YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 413 YLPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 778999999999999999999999987665
No 500
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=90.33 E-value=0.43 Score=57.20 Aligned_cols=41 Identities=20% Similarity=0.200 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhcccCCCCCcEEEEeCCCCCchhHHHHHHHHH
Q 035724 211 DSQAQAVLSCLRRTHCDHKATVELIWGPPGTGKTKTVSMLLDF 253 (1939)
Q Consensus 211 ~sQ~~AV~~~L~~~~~~~~~~v~LI~GPPGTGKTtti~~li~~ 253 (1939)
+...+.|...|.... ....+..|+|+||+|||+++..+++.
T Consensus 2 e~~~~~l~~~L~~~~--~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 2 EKEIEKLKDWLLDNS--NEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp HHHHHHHHHHHHTTT--TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhCCC--CCeEEEEEEcCCcCCcceeeeecccc
Confidence 345667777777432 45788999999999999999988854
Done!